-- dump date 20140619_083202 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 1335916000001 SEQ_END SEQ_END NC_022364.1 4835601 4835601 DR NC_022364.1; contig end 4835601..4835601 Escherichia coli LY180 YP_008563154.1 CDS LY180_00005 NC_022364.1 4834941 98 D member of the SPOUT superfamily of methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA methyltransferase join(4834941..4835601,1..98) Escherichia coli LY180 16982253 YP_008563155.1 CDS thrA NC_022364.1 336 2798 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartokinase I/homoserine dehydrogenase I 336..2798 Escherichia coli LY180 16977678 YP_008563156.1 CDS LY180_00015 NC_022364.1 2800 3732 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine kinase 2800..3732 Escherichia coli LY180 16982252 YP_008563157.1 CDS LY180_00020 NC_022364.1 3733 5019 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine synthase 3733..5019 Escherichia coli LY180 16977679 YP_008563158.1 CDS LY180_00025 NC_022364.1 5233 5529 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 5233..5529 Escherichia coli LY180 16977680 YP_008563159.1 CDS LY180_00030 NC_022364.1 5789 6769 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 5789..6769 Escherichia coli LY180 16977681 YP_008563160.1 CDS LY180_00035 NC_022364.1 6961 7737 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(6961..7737) Escherichia coli LY180 16977682 YP_008563161.1 CDS LY180_00040 NC_022364.1 7807 9237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:alanine symporter complement(7807..9237) Escherichia coli LY180 16977683 YP_008563162.1 CDS LY180_00045 NC_022364.1 9516 10469 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 9516..10469 Escherichia coli LY180 16977684 YP_008563163.1 CDS mogA NC_022364.1 10584 11171 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MogA 10584..11171 Escherichia coli LY180 16977685 YP_008563164.1 CDS LY180_00055 NC_022364.1 11206 11772 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(11206..11772) Escherichia coli LY180 16977686 YP_008563165.1 CDS LY180_00060 NC_022364.1 11921 12634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(11921..12634) Escherichia coli LY180 16977687 YP_008563166.1 CDS LY180_00065 NC_022364.1 12660 13064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(12660..13064) Escherichia coli LY180 16977688 YP_008563167.1 CDS dnaK NC_022364.1 13441 15357 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaK 13441..15357 Escherichia coli LY180 16977689 YP_008563168.1 CDS LY180_00075 NC_022364.1 15446 16576 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 15446..16576 Escherichia coli LY180 16977690 YP_008563169.1 CDS LY180_00080 NC_022364.1 16680 16832 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(16680..16832) Escherichia coli LY180 16977691 YP_008563170.1 CDS nhaA NC_022364.1 17418 18584 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 17418..18584 Escherichia coli LY180 16977692 YP_008563171.1 CDS nhaR NC_022364.1 18644 19549 D Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 18644..19549 Escherichia coli LY180 16977693 YP_008563172.1 CDS LY180_00095 NC_022364.1 19588 20547 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(19588..20547) Escherichia coli LY180 16977694 YP_008563173.1 CDS LY180_00100 NC_022364.1 20560 21705 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein complement(20560..21705) Escherichia coli LY180 16977695 YP_008563174.1 CDS LY180_00105 NC_022364.1 22138 22701 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(22138..22701) Escherichia coli LY180 16977696 YP_008563175.1 CDS LY180_00110 NC_022364.1 22748 23260 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(22748..23260) Escherichia coli LY180 16977697 YP_008563176.1 CDS rpsT NC_022364.1 24043 24306 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S20 complement(24043..24306) Escherichia coli LY180 16977698 YP_008563177.1 CDS LY180_00120 NC_022364.1 24409 24627 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 24409..24627 Escherichia coli LY180 16977699 YP_008563178.1 CDS LY180_00125 NC_022364.1 24635 25576 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional riboflavin kinase/FMN adenylyltransferase 24635..25576 Escherichia coli LY180 16977700 YP_008563179.1 CDS ileS NC_022364.1 25619 28435 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; isoleucyl-tRNA synthetase 25619..28435 Escherichia coli LY180 16977701 YP_008563180.1 CDS lspA NC_022364.1 28435 28929 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein signal peptidase 28435..28929 Escherichia coli LY180 16977702 YP_008563181.1 CDS LY180_00140 NC_022364.1 29017 29466 D rotamase; accelerates isomerization of the peptidyl prolyl bond, involved in the folding of proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 29017..29466 Escherichia coli LY180 16977703 YP_008563182.1 CDS ispH NC_022364.1 29468 30418 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 29468..30418 Escherichia coli LY180 16977704 YP_008563183.1 CDS LY180_00150 NC_022364.1 30484 31398 D catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase 30484..31398 Escherichia coli LY180 16977705 YP_008563184.1 CDS LY180_00155 NC_022364.1 31565 32386 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate reductase 31565..32386 Escherichia coli LY180 16977706 YP_008563185.1 CDS LY180_00160 NC_022364.1 32629 32724 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(32629..32724) Escherichia coli LY180 16977707 YP_008563186.1 CDS LY180_00165 NC_022364.1 32842 33990 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase small subunit 32842..33990 Escherichia coli LY180 16977708 YP_008563187.1 CDS carB NC_022364.1 34008 37229 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate synthase large subunit 34008..37229 Escherichia coli LY180 16977709 YP_008563188.1 CDS LY180_00175 NC_022364.1 37490 37885 D regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 37490..37885 Escherichia coli LY180 16977710 YP_008563189.1 CDS LY180_00180 NC_022364.1 37971 38561 R involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine operon protein CaiE complement(37971..38561) Escherichia coli LY180 16977711 YP_008563190.1 CDS LY180_00185 NC_022364.1 38567 39352 R catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitinyl-CoA dehydratase complement(38567..39352) Escherichia coli LY180 16977712 YP_008563191.1 CDS caiC NC_022364.1 39461 41014 R Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetaine/carnitine-CoA ligase complement(39461..41014) Escherichia coli LY180 16977713 YP_008563192.1 CDS LY180_00195 NC_022364.1 41088 42305 R catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA:carnitine CoA-transferase complement(41088..42305) Escherichia coli LY180 16977714 YP_008563193.1 CDS LY180_00200 NC_022364.1 42434 43576 R catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; crotonobetainyl-CoA dehydrogenase complement(42434..43576) Escherichia coli LY180 16977715 YP_008563194.1 CDS LY180_00205 NC_022364.1 43607 45121 R catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(43607..45121) Escherichia coli LY180 16977716 YP_008563195.1 CDS LY180_00210 NC_022364.1 45595 46365 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 45595..46365 Escherichia coli LY180 16977717 YP_008563196.1 CDS LY180_00215 NC_022364.1 46380 47321 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein fixB 46380..47321 Escherichia coli LY180 16977718 YP_008563197.1 CDS LY180_00220 NC_022364.1 47372 48658 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 47372..48658 Escherichia coli LY180 16977719 YP_008563198.1 CDS LY180_00225 NC_022364.1 48655 48942 D necessary for anaerobic carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin FixX 48655..48942 Escherichia coli LY180 16977720 YP_008563199.1 CDS LY180_00230 NC_022364.1 49001 50332 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metabolite transporter 49001..50332 Escherichia coli LY180 16977721 YP_008563200.1 CDS LY180_00235 NC_022364.1 50440 50970 D Required for full activity of KefC, a potassium-proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 50440..50970 Escherichia coli LY180 16977722 YP_008563201.1 CDS LY180_00240 NC_022364.1 50963 52825 D transport system that facilitates potassium-efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 50963..52825 Escherichia coli LY180 16977723 YP_008563202.1 CDS folA NC_022364.1 52906 53496 D catalyzes the reduction of dihydrofolate to tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrofolate reductase 52906..53496 Escherichia coli LY180 16977724 YP_008563203.1 CDS apaH NC_022364.1 53574 54416 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; diadenosine tetraphosphatase complement(53574..54416) Escherichia coli LY180 16977725 YP_008563204.1 CDS apaG NC_022364.1 54423 54800 R protein associated with Co2+ and Mg2+ efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(54423..54800) Escherichia coli LY180 16977726 YP_008563205.1 CDS ksgA NC_022364.1 54803 55624 R in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; members of this protein family have secondary functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(54803..55624) Escherichia coli LY180 16977727 YP_008563206.1 CDS pdxA NC_022364.1 55621 56610 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxythreonine-4-phosphate dehydrogenase complement(55621..56610) Escherichia coli LY180 16977728 YP_008563207.1 CDS LY180_00270 NC_022364.1 56610 57896 R Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(56610..57896) Escherichia coli LY180 16977729 YP_008563208.1 CDS LY180_00275 NC_022364.1 57949 60303 R is involved in outer membrane permeability; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS assembly outer membrane complex protein LptD complement(57949..60303) Escherichia coli LY180 16977730 YP_008563209.1 CDS djlA NC_022364.1 60558 61373 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 60558..61373 Escherichia coli LY180 16977731 YP_008563210.1 CDS LY180_00285 NC_022364.1 61490 62149 R catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA/tRNA pseudouridine synthase A complement(61490..62149) Escherichia coli LY180 16977732 YP_008563211.1 CDS LY180_00290 NC_022364.1 62161 65067 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(62161..65067) Escherichia coli LY180 16977733 YP_008563212.1 CDS LY180_00295 NC_022364.1 65232 67583 R Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase II complement(65232..67583) Escherichia coli LY180 16977734 YP_008563213.1 CDS araD NC_022364.1 67658 68353 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase complement(67658..68353) Escherichia coli LY180 16977735 YP_008563214.1 CDS LY180_00305 NC_022364.1 68522 70024 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose isomerase complement(68522..70024) Escherichia coli LY180 16977736 YP_008563215.1 CDS LY180_00310 NC_022364.1 70035 71735 R catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulokinase complement(70035..71735) Escherichia coli LY180 16977737 YP_008563216.1 CDS LY180_00315 NC_022364.1 72065 72952 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 72065..72952 Escherichia coli LY180 16977738 YP_008563217.1 CDS LY180_00320 NC_022364.1 73038 73802 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 73038..73802 Escherichia coli LY180 16977739 YP_008563218.1 CDS ssuB NC_022364.1 73904 74602 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; aliphatic sulfonate ABC transporter ATP-binding protein complement(73904..74602) Escherichia coli LY180 16977740 YP_008563219.1 CDS thiP NC_022364.1 74586 76196 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine transporter membrane protein complement(74586..76196) Escherichia coli LY180 16977741 YP_008563220.1 CDS tbpA NC_022364.1 76172 77155 R part of the thiamine and TPP transport system tbpA-thiPQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter substrate-binding protein complement(76172..77155) Escherichia coli LY180 16977742 YP_008563221.1 CDS LY180_00340 NC_022364.1 77319 78974 R activates sgrS under glucose-phosphate stress conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(77319..78974) Escherichia coli LY180 16977743 YP_008563222.1 CDS LY180_00345 NC_022364.1 79063 79194 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; inhibitor of glucose transporter 79063..79194 Escherichia coli LY180 16977744 YP_008563223.1 CDS LY180_00350 NC_022364.1 79296 80474 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 79296..80474 Escherichia coli LY180 16977745 YP_008563224.1 CDS leuD NC_022364.1 80523 81128 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopropylmalate isomerase complement(80523..81128) Escherichia coli LY180 16977746 YP_008563225.1 CDS LY180_00360 NC_022364.1 81139 82539 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydratase large subunit complement(81139..82539) Escherichia coli LY180 16977747 YP_008563226.1 CDS LY180_00365 NC_022364.1 82542 83633 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-isopropylmalate dehydrogenase complement(82542..83633) Escherichia coli LY180 16977748 YP_008563227.1 CDS LY180_00370 NC_022364.1 83633 85204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-isopropylmalate synthase complement(83633..85204) Escherichia coli LY180 16977749 YP_008563228.1 CDS leuO NC_022364.1 86043 86987 D activator for leuABCD operon; member of LysR family of transcriptional activators; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine transcriptional activator 86043..86987 Escherichia coli LY180 16977750 YP_008563229.1 CDS LY180_00380 NC_022364.1 87305 89029 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 87305..89029 Escherichia coli LY180 16977751 YP_008563230.1 CDS ilvH NC_022364.1 89032 89523 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 89032..89523 Escherichia coli LY180 16977752 YP_008563231.1 CDS LY180_00390 NC_022364.1 89703 90707 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 89703..90707 Escherichia coli LY180 16977753 YP_008563232.1 CDS LY180_00395 NC_022364.1 91309 91767 D MraZ; UPF0040; crystal structure shows similarity to AbrB; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MraZ 91309..91767 Escherichia coli LY180 16977754 YP_008563233.1 CDS LY180_00400 NC_022364.1 91769 92710 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 91769..92710 Escherichia coli LY180 16977755 YP_008563234.1 CDS LY180_00405 NC_022364.1 92707 93072 D membrane bound cell division protein at septum containing leucine zipper motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsL 92707..93072 Escherichia coli LY180 16977756 YP_008563235.1 CDS LY180_00410 NC_022364.1 93088 94854 D penicillin-binding protein 3; transpeptidase involved in septal peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI 93088..94854 Escherichia coli LY180 16977757 YP_008563236.1 CDS murE NC_022364.1 94841 96328 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 94841..96328 Escherichia coli LY180 16977758 YP_008563237.1 CDS murF NC_022364.1 96325 97683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 96325..97683 Escherichia coli LY180 16977759 YP_008563238.1 CDS mraY NC_022364.1 97677 98759 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-N-acetylmuramoyl-pentapeptide- transferase 97677..98759 Escherichia coli LY180 16977760 YP_008563239.1 CDS murD NC_022364.1 98762 100078 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 98762..100078 Escherichia coli LY180 16977761 YP_008563240.1 CDS LY180_00435 NC_022364.1 100078 101322 D integral membrane protein involved in stabilizing FstZ ring during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsW 100078..101322 Escherichia coli LY180 16977762 YP_008563241.1 CDS murG NC_022364.1 101319 102386 D N-acetylglucosaminyl transferase; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 101319..102386 Escherichia coli LY180 16977763 YP_008563242.1 CDS murC NC_022364.1 102440 103915 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate--alanine ligase 102440..103915 Escherichia coli LY180 16977764 YP_008563243.1 CDS ddl NC_022364.1 103908 104828 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanine--D-alanine ligase 103908..104828 Escherichia coli LY180 16977765 YP_008563244.1 CDS LY180_00455 NC_022364.1 104830 105660 D involved in septum formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsQ 104830..105660 Escherichia coli LY180 16977766 YP_008563245.1 CDS ftsA NC_022364.1 105657 106919 D ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsA 105657..106919 Escherichia coli LY180 16977767 YP_008563246.1 CDS LY180_00465 NC_022364.1 106980 108131 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M23 106980..108131 Escherichia coli LY180 16977768 YP_008563247.1 CDS lpxC NC_022364.1 108232 109149 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 108232..109149 Escherichia coli LY180 16977769 YP_008563248.1 CDS LY180_00475 NC_022364.1 109380 109892 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 109380..109892 Escherichia coli LY180 16977770 YP_008563249.1 CDS secA NC_022364.1 109954 112659 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecA 109954..112659 Escherichia coli LY180 16977771 YP_008563250.1 CDS LY180_00485 NC_022364.1 112719 113108 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase 112719..113108 Escherichia coli LY180 16977772 YP_008563251.1 CDS LY180_00490 NC_022364.1 113208 113405 R inhibits supercoiling by DNA gyrase by binding to the GyrB subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(113208..113405) Escherichia coli LY180 16977773 YP_008563252.1 CDS LY180_00495 NC_022364.1 113415 114158 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(113415..114158) Escherichia coli LY180 16977774 YP_008563253.1 CDS coaE NC_022364.1 114158 114778 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dephospho-CoA kinase complement(114158..114778) Escherichia coli LY180 16977775 YP_008563254.1 CDS LY180_00505 NC_022364.1 115003 116046 D catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine 5'-monophosphate oxidoreductase 115003..116046 Escherichia coli LY180 16977776 YP_008563255.1 CDS LY180_00510 NC_022364.1 116081 117283 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV pilin biogenesis protein complement(116081..117283) Escherichia coli LY180 16977777 YP_008563256.1 CDS LY180_00515 NC_022364.1 117273 118658 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(117273..118658) Escherichia coli LY180 16977778 YP_008563257.1 CDS LY180_00520 NC_022364.1 118668 119108 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major pilin subunit complement(118668..119108) Escherichia coli LY180 16977779 YP_008563258.1 CDS LY180_00525 NC_022364.1 119311 120204 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide pyrophosphorylase complement(119311..120204) Escherichia coli LY180 16977780 YP_008563259.1 CDS LY180_00530 NC_022364.1 120292 120843 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-anhydromuranmyl-L-alanine amidase 120292..120843 Escherichia coli LY180 16977781 YP_008563260.1 CDS LY180_00535 NC_022364.1 120840 121694 D involved in regulation of beta-lactamase; putative signaling protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 120840..121694 Escherichia coli LY180 16977782 YP_008563261.1 CDS LY180_00540 NC_022364.1 121737 123107 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter complement(121737..123107) Escherichia coli LY180 16977783 YP_008563262.1 CDS pdhR NC_022364.1 123651 124415 D activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 123651..124415 Escherichia coli LY180 16977784 YP_008563263.1 CDS aceE NC_022364.1 124576 127239 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase 124576..127239 Escherichia coli LY180 16977785 YP_008563264.1 CDS aceF NC_022364.1 127254 129146 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide acetyltransferase 127254..129146 Escherichia coli LY180 16977786 YP_008563265.1 CDS LY180_00560 NC_022364.1 129438 130895 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide dehydrogenase 129438..130895 Escherichia coli LY180 16977787 YP_008563266.1 CDS LY180_00565 NC_022364.1 130966 132723 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(130966..132723) Escherichia coli LY180 16977788 YP_008563267.1 CDS LY180_00570 NC_022364.1 133078 135675 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 133078..135675 Escherichia coli LY180 16977789 YP_008563268.1 CDS LY180_00575 NC_022364.1 135851 136213 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 135851..136213 Escherichia coli LY180 16977790 YP_008563269.1 CDS LY180_00580 NC_022364.1 136251 137045 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine decarboxylase complement(136251..137045) Escherichia coli LY180 16977791 YP_008563270.1 CDS LY180_00585 NC_022364.1 137061 137927 R Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine synthase complement(137061..137927) Escherichia coli LY180 16977792 YP_008563271.1 CDS LY180_00590 NC_022364.1 138033 138380 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(138033..138380) Escherichia coli LY180 16977793 YP_008563272.1 CDS LY180_00595 NC_022364.1 138546 140096 D laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; Derived by automated computational analysis using gene prediction method: Protein Homology.; multicopper oxidase 138546..140096 Escherichia coli LY180 16977794 YP_008563273.1 CDS LY180_00600 NC_022364.1 140143 142533 R quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose dehydrogenase complement(140143..142533) Escherichia coli LY180 16977795 YP_008563274.1 CDS LY180_00605 NC_022364.1 142739 143275 D catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine phosphoribosyltransferase 142739..143275 Escherichia coli LY180 16977796 YP_008563275.1 CDS LY180_00610 NC_022364.1 143316 143978 R catalyzes the interconversion of bicarbonate and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase complement(143316..143978) Escherichia coli LY180 16977797 YP_008563276.1 CDS LY180_00615 NC_022364.1 144087 145013 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 144087..145013 Escherichia coli LY180 16977798 YP_008563277.1 CDS LY180_00620 NC_022364.1 145010 145780 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 145010..145780 Escherichia coli LY180 16977799 YP_008563278.1 CDS LY180_00625 NC_022364.1 145885 146325 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 145885..146325 Escherichia coli LY180 16977800 YP_008563279.1 CDS LY180_00630 NC_022364.1 146389 147618 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 146389..147618 Escherichia coli LY180 16977801 YP_008563280.1 CDS LY180_00635 NC_022364.1 147622 148002 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate decarboxylase complement(147622..148002) Escherichia coli LY180 16977802 YP_008563281.1 CDS LY180_00640 NC_022364.1 148276 149178 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 148276..149178 Escherichia coli LY180 16977803 YP_008563282.1 CDS panC NC_022364.1 149252 150103 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; pantoate--beta-alanine ligase complement(149252..150103) Escherichia coli LY180 16977804 YP_008563283.1 CDS panB NC_022364.1 150115 150909 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(150115..150909) Escherichia coli LY180 16977805 YP_008563284.1 CDS LY180_00655 NC_022364.1 151022 152296 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(151022..152296) Escherichia coli LY180 16977806 YP_008563285.1 CDS LY180_00660 NC_022364.1 152349 152945 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(152349..152945) Escherichia coli LY180 16977807 YP_008563286.1 CDS LY180_00665 NC_022364.1 152972 153574 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(152972..153574) Escherichia coli LY180 16977808 YP_008563287.1 CDS LY180_00670 NC_022364.1 153589 154158 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StaD complement(153589..154158) Escherichia coli LY180 16977809 YP_008563288.1 CDS LY180_00675 NC_022364.1 154175 156775 R similar to the fimbrial usher protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(154175..156775) Escherichia coli LY180 16977810 YP_008563289.1 CDS LY180_00680 NC_022364.1 156810 157550 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein EcpD complement(156810..157550) Escherichia coli LY180 16977811 YP_008563290.1 CDS LY180_00685 NC_022364.1 157655 158239 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(157655..158239) Escherichia coli LY180 16977812 YP_008563291.1 CDS LY180_00690 NC_022364.1 158609 159088 R catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(158609..159088) Escherichia coli LY180 16977813 YP_008563292.1 CDS pcnB NC_022364.1 159085 160398 R Polymerase that creates the 3' poly(A) tail found in some mRNA's; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; poly(A) polymerase I complement(159085..160398) Escherichia coli LY180 16977814 YP_008563293.1 CDS LY180_00700 NC_022364.1 160542 161468 R this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-Q tRNA(Asp) ligase complement(160542..161468) Escherichia coli LY180 16977815 YP_008563294.1 CDS dksA NC_022364.1 161505 161960 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(161505..161960) Escherichia coli LY180 16977816 YP_008563295.1 CDS LY180_00710 NC_022364.1 162138 162842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(162138..162842) Escherichia coli LY180 16977817 YP_008563296.1 CDS LY180_00715 NC_022364.1 162857 163387 R catalyzes the ligation and cleavage of of 2'-5' linkages in RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2'-5' RNA ligase complement(162857..163387) Escherichia coli LY180 16977818 YP_008563297.1 CDS LY180_00720 NC_022364.1 163461 165890 D similar in sequence to the ATP-dependent RNA helicase HrpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 163461..165890 Escherichia coli LY180 16977819 YP_008563298.1 CDS mrcB NC_022364.1 166086 168620 D penicillin-binding protein 1b; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glycosyl transferase/transpeptidase 166086..168620 Escherichia coli LY180 16977820 YP_008563299.1 CDS LY180_00730 NC_022364.1 168840 171083 D involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrichrome outer membrane transporter 168840..171083 Escherichia coli LY180 16977821 YP_008563300.1 CDS LY180_00735 NC_022364.1 171134 171931 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; iron-hydroxamate transporter ATP-binding protein 171134..171931 Escherichia coli LY180 16977822 YP_008563301.1 CDS LY180_00740 NC_022364.1 171931 172821 D Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter substrate-binding subunit 171931..172821 Escherichia coli LY180 16977823 YP_008563302.1 CDS LY180_00745 NC_022364.1 172818 174800 D part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-hydroxamate transporter permease subunit 172818..174800 Escherichia coli LY180 16977824 YP_008563303.1 CDS LY180_00750 NC_022364.1 174835 176115 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate-1-semialdehyde aminotransferase complement(174835..176115) Escherichia coli LY180 16977825 YP_008563304.1 CDS LY180_00755 NC_022364.1 176340 177761 D Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chloride channel protein 176340..177761 Escherichia coli LY180 16977826 YP_008563305.1 CDS LY180_00760 NC_022364.1 177843 178187 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster insertion protein ErpA 177843..178187 Escherichia coli LY180 16977827 YP_008563306.1 CDS LY180_00765 NC_022364.1 178234 178857 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(178234..178857) Escherichia coli LY180 16977828 YP_008563307.1 CDS LY180_00770 NC_022364.1 178895 179695 R solute binding component of the vitamin B12 transport system BtuCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12 transporter complement(178895..179695) Escherichia coli LY180 16977829 YP_008563308.1 CDS LY180_00775 NC_022364.1 179688 180386 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(179688..180386) Escherichia coli LY180 16977830 YP_008563309.1 CDS dgt NC_022364.1 180470 181987 D forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyguanosinetriphosphate triphosphohydrolase 180470..181987 Escherichia coli LY180 16977831 YP_008563310.1 CDS LY180_00785 NC_022364.1 182117 183541 D protease Do; required at high temperature; degrades damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 182117..183541 Escherichia coli LY180 16977832 YP_008563311.1 CDS LY180_00790 NC_022364.1 183696 184853 D regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; CdaR family transcriptional regulator 183696..184853 Escherichia coli LY180 16977833 YP_008563312.1 CDS LY180_00795 NC_022364.1 184942 185328 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(184942..185328) Escherichia coli LY180 16977834 YP_008563313.1 CDS dapD NC_022364.1 185640 186464 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(185640..186464) Escherichia coli LY180 16977835 YP_008563314.1 CDS LY180_00805 NC_022364.1 186495 189167 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PII uridylyl-transferase complement(186495..189167) Escherichia coli LY180 16977836 YP_008563315.1 CDS LY180_00810 NC_022364.1 189229 190023 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine aminopeptidase complement(189229..190023) Escherichia coli LY180 16977837 YP_008563316.1 CDS LY180_00815 NC_022364.1 190193 191116 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S2 190193..191116 Escherichia coli LY180 16977838 YP_008563317.1 CDS tsf NC_022364.1 191374 192225 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; Derived by automated computational analysis using gene prediction method: Protein Homology.; endo-1,4-D-glucanase 191374..192225 Escherichia coli LY180 16977839 YP_008563318.1 CDS LY180_00825 NC_022364.1 192372 193097 D Derived by automated computational analysis using gene prediction method: Protein Homology.; uridylate kinase 192372..193097 Escherichia coli LY180 16977840 YP_008563319.1 CDS frr NC_022364.1 193389 193946 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome recycling factor 193389..193946 Escherichia coli LY180 16977841 YP_008563320.1 CDS LY180_00835 NC_022364.1 194038 195234 D catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 194038..195234 Escherichia coli LY180 16977842 YP_008563321.1 CDS LY180_00840 NC_022364.1 195420 196181 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate synthase 195420..196181 Escherichia coli LY180 16977843 YP_008563322.1 CDS cdsA NC_022364.1 196194 197051 D catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diglyceride synthase 196194..197051 Escherichia coli LY180 16977844 YP_008563323.1 CDS LY180_00850 NC_022364.1 197063 198415 D catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc metallopeptidase RseP 197063..198415 Escherichia coli LY180 16977845 YP_008563324.1 CDS LY180_00855 NC_022364.1 198445 200877 D part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein assembly factor YaeT 198445..200877 Escherichia coli LY180 16977846 YP_008563325.1 CDS LY180_00860 NC_022364.1 200999 201484 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 200999..201484 Escherichia coli LY180 16977847 YP_008563326.1 CDS lpxD NC_022364.1 201488 202513 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 201488..202513 Escherichia coli LY180 16977848 YP_008563327.1 CDS LY180_00870 NC_022364.1 202618 203073 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymyristoyl-ACP dehydratase 202618..203073 Escherichia coli LY180 16977849 YP_008563328.1 CDS LY180_00875 NC_022364.1 203077 203865 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine acyltransferase 203077..203865 Escherichia coli LY180 16977850 YP_008563329.1 CDS lpxB NC_022364.1 203865 205013 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid-A-disaccharide synthase 203865..205013 Escherichia coli LY180 16977851 YP_008563330.1 CDS rnhB NC_022364.1 205010 205606 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease HII 205010..205606 Escherichia coli LY180 16977852 YP_008563331.1 CDS dnaE NC_022364.1 205643 209125 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit alpha 205643..209125 Escherichia coli LY180 16977853 YP_008563332.1 CDS LY180_00895 NC_022364.1 209138 210097 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit alpha 209138..210097 Escherichia coli LY180 16977854 YP_008563333.1 CDS LY180_00900 NC_022364.1 210196 212337 D constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA 210196..212337 Escherichia coli LY180 16977855 YP_008563334.1 CDS LY180_00905 NC_022364.1 212394 212783 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lyase 212394..212783 Escherichia coli LY180 16977856 YP_008563335.1 CDS tilS NC_022364.1 212848 214146 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(Ile)-lysidine ligase 212848..214146 Escherichia coli LY180 16977857 YP_008563336.1 CDS LY180_00915 NC_022364.1 214195 214455 R Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; Rho-binding antiterminator complement(214195..214455) Escherichia coli LY180 16977858 YP_008563337.1 CDS LY180_00920 NC_022364.1 214442 214642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(214442..214642) Escherichia coli LY180 16977859 YP_008563338.1 CDS LY180_00925 NC_022364.1 214808 215353 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 214808..215353 Escherichia coli LY180 16977860 YP_008563339.1 CDS LY180_00930 NC_022364.1 215350 215772 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 215350..215772 Escherichia coli LY180 16977861 YP_008563340.1 CDS LY180_00935 NC_022364.1 215786 216496 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein involved with copper homeostasis and adhesion 215786..216496 Escherichia coli LY180 16977862 YP_008563341.1 CDS LY180_00940 NC_022364.1 216651 217475 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(216651..217475) Escherichia coli LY180 16977863 YP_008563342.1 CDS LY180_00945 NC_022364.1 217529 219247 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); Derived by automated computational analysis using gene prediction method: Protein Homology.; prolyl-tRNA synthetase complement(217529..219247) Escherichia coli LY180 16977864 YP_008563343.1 CDS LY180_00950 NC_022364.1 219358 220065 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(219358..220065) Escherichia coli LY180 16977865 YP_008563344.1 CDS rcsF NC_022364.1 220062 220466 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein complement(220062..220466) Escherichia coli LY180 16977866 YP_008563345.1 CDS metQ NC_022364.1 220584 221399 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein complement(220584..221399) Escherichia coli LY180 16977867 YP_008563346.1 CDS LY180_00965 NC_022364.1 221439 222092 R part of the MetNIQ methionine uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter permease complement(221439..222092) Escherichia coli LY180 16977868 YP_008563347.1 CDS glnQ NC_022364.1 222085 223116 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(222085..223116) Escherichia coli LY180 16977869 YP_008563348.1 CDS LY180_00975 NC_022364.1 223304 223879 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D,D-heptose 1,7-bisphosphate phosphatase 223304..223879 Escherichia coli LY180 16977870 YP_008563349.1 CDS dkgB NC_022364.1 229638 230441 D catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 229638..230441 Escherichia coli LY180 16977877 YP_008563350.1 CDS LY180_01015 NC_022364.1 230438 231352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(230438..231352) Escherichia coli LY180 16977878 YP_008563351.1 CDS LY180_01020 NC_022364.1 231593 232393 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 231593..232393 Escherichia coli LY180 16977879 YP_008563352.1 CDS LY180_01025 NC_022364.1 232471 233241 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB 232471..233241 Escherichia coli LY180 16977880 YP_008563353.1 CDS mltD NC_022364.1 233289 234647 R catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(233289..234647) Escherichia coli LY180 16977881 YP_008563354.1 CDS LY180_01035 NC_022364.1 234719 235474 R catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyacylglutathione hydrolase complement(234719..235474) Escherichia coli LY180 16977882 YP_008563355.1 CDS LY180_01040 NC_022364.1 235508 236230 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 235508..236230 Escherichia coli LY180 16977883 YP_008563356.1 CDS LY180_01045 NC_022364.1 236227 236694 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease H complement(236227..236694) Escherichia coli LY180 16977884 YP_008563357.1 CDS LY180_01050 NC_022364.1 236750 237490 D 3'-5' exonuclease of DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit epsilon 236750..237490 Escherichia coli LY180 16977885 YP_008563358.1 CDS LY180_01060 NC_022364.1 238030 238815 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 238030..238815 Escherichia coli LY180 16977887 YP_008563359.1 CDS LY180_01065 NC_022364.1 238952 239431 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(238952..239431) Escherichia coli LY180 16977888 YP_008563360.1 CDS LY180_01070 NC_022364.1 239441 240355 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(239441..240355) Escherichia coli LY180 16977889 YP_008563361.1 CDS LY180_01075 NC_022364.1 240399 240881 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Hcp complement(240399..240881) Escherichia coli LY180 16977890 YP_008563362.1 CDS LY180_01080 NC_022364.1 240905 242257 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(240905..242257) Escherichia coli LY180 16977891 YP_008563363.1 CDS LY180_01085 NC_022364.1 242268 245792 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein IcmF complement(242268..245792) Escherichia coli LY180 16977892 YP_008563364.1 CDS LY180_01090 NC_022364.1 245811 247223 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CAD protein complement(245811..247223) Escherichia coli LY180 16977893 YP_008563365.1 CDS LY180_01095 NC_022364.1 247228 247971 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein complement(247228..247971) Escherichia coli LY180 16977894 YP_008563366.1 CDS LY180_01100 NC_022364.1 247968 250775 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone complement(247968..250775) Escherichia coli LY180 16977895 YP_008563367.1 CDS LY180_01105 NC_022364.1 250784 251545 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(250784..251545) Escherichia coli LY180 16977896 YP_008563368.1 CDS LY180_01110 NC_022364.1 251550 252881 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(251550..252881) Escherichia coli LY180 16977897 YP_008563369.1 CDS LY180_01115 NC_022364.1 252884 253408 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(252884..253408) Escherichia coli LY180 16977898 YP_008563370.1 CDS LY180_01120 NC_022364.1 253405 254685 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion system protein ImpI complement(253405..254685) Escherichia coli LY180 16977899 YP_008563371.1 CDS LY180_01125 NC_022364.1 254710 255792 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein complement(254710..255792) Escherichia coli LY180 16977900 YP_008563372.1 CDS LY180_01130 NC_022364.1 255756 257606 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type VI secretion protein complement(255756..257606) Escherichia coli LY180 16977901 YP_008563373.1 CDS LY180_01135 NC_022364.1 257610 258023 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein complement(257610..258023) Escherichia coli LY180 16977902 YP_008563374.1 CDS LY180_01140 NC_022364.1 258030 259505 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein complement(258030..259505) Escherichia coli LY180 16977903 YP_008563375.1 CDS LY180_01145 NC_022364.1 259556 259780 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(259556..259780) Escherichia coli LY180 16977904 YP_008563376.1 CDS LY180_01150 NC_022364.1 259815 260315 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(259815..260315) Escherichia coli LY180 16977905 YP_008563377.1 CDS LY180_01155 NC_022364.1 260743 260886 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 260743..260886 Escherichia coli LY180 16977906 YP_008563378.1 CDS LY180_01160 NC_022364.1 261013 261531 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 261013..261531 Escherichia coli LY180 16977907 YP_008563379.1 CDS LY180_01165 NC_022364.1 261741 263882 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV secretion protein Rhs 261741..263882 Escherichia coli LY180 16977908 YP_008563380.1 CDS LY180_01170 NC_022364.1 263958 268007 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 263958..268007 Escherichia coli LY180 16977909 YP_008563381.1 CDS LY180_01175 NC_022364.1 267997 268404 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 267997..268404 Escherichia coli LY180 16977910 YP_008563382.1 CDS LY180_01180 NC_022364.1 268754 269167 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 268754..269167 Escherichia coli LY180 16977911 YP_008563383.1 CDS LY180_01185 NC_022364.1 269275 270411 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 269275..270411 Escherichia coli LY180 16977912 YP_008563384.1 CDS LY180_01190 NC_022364.1 270453 271223 R NAD(P)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-N hydrolase family amidase complement(270453..271223) Escherichia coli LY180 16977913 YP_008563385.1 CDS LY180_01195 NC_022364.1 271377 271850 D inactivates vertebrate C-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; C-lysozyme inhibitor 271377..271850 Escherichia coli LY180 16977914 YP_008563386.1 CDS fadE NC_022364.1 271893 274337 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase complement(271893..274337) Escherichia coli LY180 16977915 YP_008563387.1 CDS gmhA NC_022364.1 274577 275155 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoheptose isomerase 274577..275155 Escherichia coli LY180 16977916 YP_008563388.1 CDS LY180_01210 NC_022364.1 275361 276128 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine amidotransferase 275361..276128 Escherichia coli LY180 16977917 YP_008563389.1 CDS LY180_01215 NC_022364.1 276099 276839 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transpeptidase complement(276099..276839) Escherichia coli LY180 16977918 YP_008563390.1 CDS LY180_01220 NC_022364.1 276995 277273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mRNA interferase YafQ complement(276995..277273) Escherichia coli LY180 16977919 YP_008563391.1 CDS LY180_01225 NC_022364.1 277276 277536 R DNA-damage-inducible protein J; antitoxin of YafQ-DinJ toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(277276..277536) Escherichia coli LY180 16977920 YP_008563392.1 CDS LY180_01230 NC_022364.1 277722 278495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 277722..278495 Escherichia coli LY180 16977921 YP_008563393.1 CDS LY180_01235 NC_022364.1 278552 278908 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein HhH-GPD complement(278552..278908) Escherichia coli LY180 16977922 YP_008563394.1 CDS LY180_01240 NC_022364.1 278901 279179 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin HicA complement(278901..279179) Escherichia coli LY180 16977923 YP_008563395.1 CDS flhA NC_022364.1 279284 281377 R membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA complement(279284..281377) Escherichia coli LY180 16977924 YP_008563396.1 CDS LY180_01250 NC_022364.1 281361 282500 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FlhB complement(281361..282500) Escherichia coli LY180 16977925 YP_008563397.1 CDS LY180_01255 NC_022364.1 282490 283272 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FliR complement(282490..283272) Escherichia coli LY180 16977926 YP_008563398.1 CDS fliQ NC_022364.1 283274 283549 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ complement(283274..283549) Escherichia coli LY180 16977927 YP_008563399.1 CDS fliP NC_022364.1 283549 284301 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP complement(283549..284301) Escherichia coli LY180 16977928 YP_008563400.1 CDS LY180_01270 NC_022364.1 284298 284669 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(284298..284669) Escherichia coli LY180 16977929 YP_008563401.1 CDS LY180_01275 NC_022364.1 284662 285513 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(284662..285513) Escherichia coli LY180 16977930 YP_008563402.1 CDS LY180_01280 NC_022364.1 285792 285896 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(285792..285896) Escherichia coli LY180 16977931 YP_008563403.1 CDS pspF NC_022364.1 285900 286886 D transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 285900..286886 Escherichia coli LY180 16977932 YP_008563404.1 CDS LY180_01290 NC_022364.1 286901 287242 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-basal body protein FliE 286901..287242 Escherichia coli LY180 16977933 YP_008563405.1 CDS fliF NC_022364.1 287247 288893 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar M-ring protein FliF 287247..288893 Escherichia coli LY180 16977934 YP_008563406.1 CDS fliG NC_022364.1 288871 289881 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar motor switch protein FliG 288871..289881 Escherichia coli LY180 16977935 YP_008563407.1 CDS fliH NC_022364.1 289885 290595 D binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar assembly protein FliH 289885..290595 Escherichia coli LY180 16977936 YP_008563408.1 CDS fliI NC_022364.1 290588 291925 D involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 290588..291925 Escherichia coli LY180 16977937 YP_008563409.1 CDS LY180_01315 NC_022364.1 291928 292362 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar export protein FliJ 291928..292362 Escherichia coli LY180 16977938 YP_008563410.1 CDS LY180_01320 NC_022364.1 292365 292760 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycerol-3-phosphate cytidylyltransferase 292365..292760 Escherichia coli LY180 16977939 YP_008563411.1 CDS LY180_01325 NC_022364.1 292915 293610 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein mom complement(292915..293610) Escherichia coli LY180 16977940 YP_008563412.1 CDS LY180_01330 NC_022364.1 293844 294425 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase complement(293844..294425) Escherichia coli LY180 16977941 YP_008563413.1 CDS LY180_01335 NC_022364.1 294455 295450 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 294455..295450 Escherichia coli LY180 16977942 YP_008563414.1 CDS LY180_01340 NC_022364.1 295453 295986 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein 295453..295986 Escherichia coli LY180 16977943 YP_008563415.1 CDS LY180_01345 NC_022364.1 296015 296542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein complement(296015..296542) Escherichia coli LY180 16977944 YP_008563416.1 CDS LY180_01350 NC_022364.1 296545 298059 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(296545..298059) Escherichia coli LY180 16977945 YP_008563417.1 CDS LY180_01355 NC_022364.1 298059 298601 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(298059..298601) Escherichia coli LY180 16977946 YP_008563418.1 CDS LY180_01360 NC_022364.1 298592 299674 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(298592..299674) Escherichia coli LY180 16977947 YP_008563419.1 CDS LY180_01365 NC_022364.1 299675 300112 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(299675..300112) Escherichia coli LY180 16977948 YP_008563420.1 CDS LY180_01370 NC_022364.1 300109 300702 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(300109..300702) Escherichia coli LY180 16977949 YP_008563421.1 CDS LY180_01375 NC_022364.1 300690 301829 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; baseplate protein complement(300690..301829) Escherichia coli LY180 16977950 YP_008563422.1 CDS LY180_01380 NC_022364.1 301822 303309 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DMT family permease complement(301822..303309) Escherichia coli LY180 16977951 YP_008563423.1 CDS LY180_01385 NC_022364.1 303314 305386 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(303314..305386) Escherichia coli LY180 16977952 YP_008563424.1 CDS LY180_01390 NC_022364.1 305401 305547 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(305401..305547) Escherichia coli LY180 16977953 YP_008563425.1 CDS LY180_01395 NC_022364.1 305531 305965 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(305531..305965) Escherichia coli LY180 16977954 YP_008563426.1 CDS LY180_01400 NC_022364.1 305975 306331 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(305975..306331) Escherichia coli LY180 16977955 YP_008563427.1 CDS LY180_01405 NC_022364.1 306341 307828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(306341..307828) Escherichia coli LY180 16977956 YP_008563428.1 CDS LY180_01410 NC_022364.1 307825 308031 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(307825..308031) Escherichia coli LY180 16977957 YP_008563429.1 CDS LY180_01415 NC_022364.1 308015 308563 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(308015..308563) Escherichia coli LY180 16977958 YP_008563430.1 CDS LY180_01420 NC_022364.1 308563 308988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(308563..308988) Escherichia coli LY180 16977959 YP_008563431.1 CDS LY180_01425 NC_022364.1 308985 309395 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(308985..309395) Escherichia coli LY180 16977960 YP_008563432.1 CDS LY180_01430 NC_022364.1 309462 310379 R Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein complement(309462..310379) Escherichia coli LY180 16977961 YP_008563433.1 CDS LY180_01435 NC_022364.1 310376 311461 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phage scaffold protein complement(310376..311461) Escherichia coli LY180 16977962 YP_008563434.1 CDS LY180_01440 NC_022364.1 311658 312116 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; G protein complement(311658..312116) Escherichia coli LY180 16977963 YP_008563435.1 CDS LY180_01445 NC_022364.1 312125 313444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F protein complement(312125..313444) Escherichia coli LY180 16977964 YP_008563436.1 CDS LY180_01450 NC_022364.1 313425 314963 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(313425..314963) Escherichia coli LY180 16977965 YP_008563437.1 CDS LY180_01455 NC_022364.1 314963 316618 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(314963..316618) Escherichia coli LY180 16977966 YP_008563438.1 CDS LY180_01460 NC_022364.1 316626 317201 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(316626..317201) Escherichia coli LY180 16977967 YP_008563439.1 CDS LY180_01465 NC_022364.1 317213 317503 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(317213..317503) Escherichia coli LY180 16977968 YP_008563440.1 CDS LY180_01470 NC_022364.1 317500 317799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(317500..317799) Escherichia coli LY180 16977969 YP_008563441.1 CDS LY180_01475 NC_022364.1 317799 317993 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(317799..317993) Escherichia coli LY180 16977970 YP_008563442.1 CDS LY180_01480 NC_022364.1 318152 318538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(318152..318538) Escherichia coli LY180 16977971 YP_008563443.1 CDS LY180_01485 NC_022364.1 318522 319037 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(318522..319037) Escherichia coli LY180 16977972 YP_008563444.1 CDS LY180_01490 NC_022364.1 319132 319554 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; positive regulator of late transcription complement(319132..319554) Escherichia coli LY180 16977973 YP_008563445.1 CDS LY180_01495 NC_022364.1 319567 319686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(319567..319686) Escherichia coli LY180 16977974 YP_008563446.1 CDS LY180_01500 NC_022364.1 319696 320058 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(319696..320058) Escherichia coli LY180 16977975 YP_008563447.1 CDS LY180_01505 NC_022364.1 320051 320269 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(320051..320269) Escherichia coli LY180 16977976 YP_008563448.1 CDS LY180_01510 NC_022364.1 320347 320736 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Middle operon regulator complement(320347..320736) Escherichia coli LY180 16977977 YP_008563449.1 CDS LY180_01515 NC_022364.1 320733 321284 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(320733..321284) Escherichia coli LY180 16977978 YP_008563450.1 CDS LY180_01520 NC_022364.1 321560 321862 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(321560..321862) Escherichia coli LY180 16977979 YP_008563451.1 CDS LY180_01525 NC_022364.1 321864 322046 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(321864..322046) Escherichia coli LY180 16977980 YP_008563452.1 CDS LY180_01530 NC_022364.1 322033 322563 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(322033..322563) Escherichia coli LY180 16977981 YP_008563453.1 CDS LY180_01535 NC_022364.1 322563 323093 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(322563..323093) Escherichia coli LY180 16977982 YP_008563454.1 CDS LY180_01540 NC_022364.1 323192 323716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; host-nuclease inhibitor protein Gam complement(323192..323716) Escherichia coli LY180 16977983 YP_008563455.1 CDS LY180_01545 NC_022364.1 323736 324035 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(323736..324035) Escherichia coli LY180 16977984 YP_008563456.1 CDS LY180_01550 NC_022364.1 324036 324455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(324036..324455) Escherichia coli LY180 16977985 YP_008563457.1 CDS LY180_01555 NC_022364.1 324470 324733 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(324470..324733) Escherichia coli LY180 16977986 YP_008563458.1 CDS LY180_01560 NC_022364.1 324745 324975 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(324745..324975) Escherichia coli LY180 16977987 YP_008563459.1 CDS LY180_01565 NC_022364.1 324978 325205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cim complement(324978..325205) Escherichia coli LY180 16977988 YP_008563460.1 CDS LY180_01570 NC_022364.1 325221 326159 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA transposition protein complement(325221..326159) Escherichia coli LY180 16977989 YP_008563461.1 CDS LY180_01575 NC_022364.1 326198 328189 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(326198..328189) Escherichia coli LY180 16977990 YP_008563462.1 CDS LY180_01580 NC_022364.1 328191 328418 R activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(328191..328418) Escherichia coli LY180 16977991 YP_008563463.1 CDS LY180_01585 NC_022364.1 328588 329178 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; repressor 328588..329178 Escherichia coli LY180 16977992 YP_008563464.1 CDS LY180_01590 NC_022364.1 329600 332116 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase complement(329600..332116) Escherichia coli LY180 16977993 YP_008563465.1 CDS LY180_01595 NC_022364.1 332223 333152 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysine-N-methylase complement(332223..333152) Escherichia coli LY180 16977994 YP_008563466.1 CDS LY180_01600 NC_022364.1 333279 333677 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar chaperone protein complement(333279..333677) Escherichia coli LY180 16977995 YP_008563467.1 CDS LY180_01605 NC_022364.1 333720 333998 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; anti-sigma-28 factor FlgM complement(333720..333998) Escherichia coli LY180 16977996 YP_008563468.1 CDS LY180_01610 NC_022364.1 334079 334816 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagella basal body P-ring formation protein FlgA complement(334079..334816) Escherichia coli LY180 16977997 YP_008563469.1 CDS flgB NC_022364.1 334889 335233 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgB 334889..335233 Escherichia coli LY180 16977998 YP_008563470.1 CDS flgC NC_022364.1 335236 335667 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 335236..335667 Escherichia coli LY180 16977999 YP_008563471.1 CDS LY180_01625 NC_022364.1 335667 336380 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook capping protein 335667..336380 Escherichia coli LY180 16978000 YP_008563472.1 CDS flgE NC_022364.1 336465 337667 D the hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE 336465..337667 Escherichia coli LY180 16978001 YP_008563473.1 CDS LY180_01635 NC_022364.1 337667 338404 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body rod protein FlgF 337667..338404 Escherichia coli LY180 16978002 YP_008563474.1 CDS flgG NC_022364.1 338483 339268 D makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 338483..339268 Escherichia coli LY180 16978003 YP_008563475.1 CDS flgH NC_022364.1 339540 340205 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; the Yersinia have 2 copies of flgH; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body L-ring protein 339540..340205 Escherichia coli LY180 16978004 YP_008563476.1 CDS flgI NC_022364.1 340220 341320 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 340220..341320 Escherichia coli LY180 16978005 YP_008563477.1 CDS LY180_01655 NC_022364.1 341320 341619 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rod binding protein 341320..341619 Escherichia coli LY180 16978006 YP_008563478.1 CDS LY180_01660 NC_022364.1 341802 343178 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-associated protein FlgK 341802..343178 Escherichia coli LY180 16978007 YP_008563479.1 CDS LY180_01665 NC_022364.1 343193 344122 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook protein 343193..344122 Escherichia coli LY180 16978008 YP_008563480.1 CDS LY180_01670 NC_022364.1 344139 345116 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar hook associated protein 344139..345116 Escherichia coli LY180 16978009 YP_008563481.1 CDS LY180_01675 NC_022364.1 345175 346017 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; CadC family transcriptional regulator complement(345175..346017) Escherichia coli LY180 16978010 YP_008563482.1 CDS LY180_01680 NC_022364.1 346175 347383 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 346175..347383 Escherichia coli LY180 16978011 YP_008563483.1 CDS LY180_01685 NC_022364.1 347841 348755 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellin 347841..348755 Escherichia coli LY180 16978012 YP_008563484.1 CDS LY180_01690 NC_022364.1 348962 350278 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook protein 348962..350278 Escherichia coli LY180 16978013 YP_008563485.1 CDS LY180_01695 NC_022364.1 350301 350693 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar biosynthesis protein FliS 350301..350693 Escherichia coli LY180 16978014 YP_008563486.1 CDS LY180_01700 NC_022364.1 350698 351009 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lateral flagellar chaperone protein 350698..351009 Escherichia coli LY180 16978015 YP_008563487.1 CDS LY180_01705 NC_022364.1 351006 352067 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar hook-length control protein FliK 351006..352067 Escherichia coli LY180 16978016 YP_008563488.1 CDS LY180_01710 NC_022364.1 352075 352542 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar basal body protein FliL 352075..352542 Escherichia coli LY180 16978017 YP_008563489.1 CDS LY180_01715 NC_022364.1 352562 353278 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA polymerase sigma 70 352562..353278 Escherichia coli LY180 16978018 YP_008563490.1 CDS LY180_01720 NC_022364.1 353291 354154 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; flagellar motor protein MotA 353291..354154 Escherichia coli LY180 16978019 YP_008563491.1 CDS LY180_01725 NC_022364.1 354157 355080 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 354157..355080 Escherichia coli LY180 16978020 YP_008563492.1 CDS LY180_01730 NC_022364.1 355151 356206 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase IV 355151..356206 Escherichia coli LY180 16978021 YP_008563493.1 CDS LY180_01735 NC_022364.1 356203 356655 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase 356203..356655 Escherichia coli LY180 16978022 YP_008563494.1 CDS LY180_01740 NC_022364.1 356874 358040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 356874..358040 Escherichia coli LY180 16978023 YP_008563495.1 CDS prfH NC_022364.1 358037 358651 D similar to release factor 1 and 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 358037..358651 Escherichia coli LY180 16978024 YP_008563496.1 CDS LY180_01750 NC_022364.1 358708 360165 R catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacyl-histidine dipeptidase complement(358708..360165) Escherichia coli LY180 16978025 YP_008563497.1 CDS LY180_01755 NC_022364.1 360426 360884 D catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine phosphoribosyltransferase 360426..360884 Escherichia coli LY180 16978026 YP_008563498.1 CDS frsA NC_022364.1 360976 362220 D forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; Derived by automated computational analysis using gene prediction method: Protein Homology.; fermentation/respiration switch protein 360976..362220 Escherichia coli LY180 16978027 YP_008563499.1 CDS LY180_01765 NC_022364.1 362278 362679 D involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 362278..362679 Escherichia coli LY180 16978028 YP_008563500.1 CDS LY180_01770 NC_022364.1 362718 363773 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane phosphoporin protein E complement(362718..363773) Escherichia coli LY180 16978029 YP_008563501.1 CDS LY180_01775 NC_022364.1 364061 365164 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl kinase 364061..365164 Escherichia coli LY180 16978030 YP_008563502.1 CDS LY180_01780 NC_022364.1 365176 366429 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl phosphate reductase 365176..366429 Escherichia coli LY180 16978031 YP_008563503.1 CDS LY180_01790 NC_022364.1 366746 367156 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(366746..367156) Escherichia coli LY180 16978033 YP_008563504.1 CDS LY180_01795 NC_022364.1 367135 368091 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(367135..368091) Escherichia coli LY180 16978034 YP_008563505.1 CDS LY180_01800 NC_022364.1 368101 370299 R Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase complement(368101..370299) Escherichia coli LY180 16978035 YP_008563506.1 CDS LY180_01805 NC_022364.1 370296 371252 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; xanthine dehydrogenase complement(370296..371252) Escherichia coli LY180 16978036 YP_008563507.1 CDS LY180_01810 NC_022364.1 371249 371938 R iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit C complement(371249..371938) Escherichia coli LY180 16978037 YP_008563508.1 CDS LY180_01815 NC_022364.1 372061 372309 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 372061..372309 Escherichia coli LY180 16978038 YP_008563509.1 CDS LY180_01820 NC_022364.1 373216 373545 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(373216..373545) Escherichia coli LY180 16978039 YP_008563510.1 CDS LY180_01825 NC_022364.1 373858 374568 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(373858..374568) Escherichia coli LY180 16978040 YP_008563511.1 CDS LY180_01830 NC_022364.1 374537 376180 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(374537..376180) Escherichia coli LY180 16978041 YP_008563512.1 CDS LY180_01835 NC_022364.1 376170 378695 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(376170..378695) Escherichia coli LY180 16978042 YP_008563513.1 CDS LY180_01840 NC_022364.1 378721 379389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(378721..379389) Escherichia coli LY180 16978043 YP_008563514.1 CDS LY180_01845 NC_022364.1 379447 380034 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrillin MatB complement(379447..380034) Escherichia coli LY180 16978044 YP_008563515.1 CDS LY180_01850 NC_022364.1 380109 380699 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator complement(380109..380699) Escherichia coli LY180 16978045 YP_008563516.1 CDS LY180_01855 NC_022364.1 381474 381701 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 381474..381701 Escherichia coli LY180 16978046 YP_008563517.1 CDS rpmJ NC_022364.1 381736 381876 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 complement(381736..381876) Escherichia coli LY180 16978047 YP_008563518.1 CDS LY180_01865 NC_022364.1 381876 382139 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 complement(381876..382139) Escherichia coli LY180 16978048 YP_008563519.1 CDS LY180_01870 NC_022364.1 382502 382603 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(382502..382603) Escherichia coli LY180 16978049 YP_008563520.1 CDS LY180_01875 NC_022364.1 382728 382847 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(382728..382847) Escherichia coli LY180 16978050 YP_008563521.1 CDS LY180_01880 NC_022364.1 383719 387972 D Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 383719..387972 Escherichia coli LY180 16978051 YP_008563522.1 CDS LY180_01885 NC_022364.1 388093 388950 R regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(388093..388950) Escherichia coli LY180 16978052 YP_008563523.1 CDS dkgA NC_022364.1 389199 390068 D methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 389199..390068 Escherichia coli LY180 16978053 YP_008563524.1 CDS LY180_01895 NC_022364.1 390228 390821 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(390228..390821) Escherichia coli LY180 16978054 YP_008563525.1 CDS LY180_01900 NC_022364.1 390833 391069 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(390833..391069) Escherichia coli LY180 16978055 YP_008563526.1 CDS LY180_01905 NC_022364.1 391178 392503 R Involved in disulfide oxidoreductase activity and electron transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide-disulfide oxidoreductase complement(391178..392503) Escherichia coli LY180 16978056 YP_008563527.1 CDS LY180_01910 NC_022364.1 392729 393583 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 392729..393583 Escherichia coli LY180 16978057 YP_008563528.1 CDS LY180_01915 NC_022364.1 394100 394819 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 394100..394819 Escherichia coli LY180 16978058 YP_008563529.1 CDS LY180_01920 NC_022364.1 394830 396257 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid dehydrogenase 394830..396257 Escherichia coli LY180 16978059 YP_008563530.1 CDS LY180_01925 NC_022364.1 396250 396945 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 396250..396945 Escherichia coli LY180 16978060 YP_008563531.1 CDS LY180_01930 NC_022364.1 397188 397856 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(397188..397856) Escherichia coli LY180 16978061 YP_008563532.1 CDS LY180_01940 NC_022364.1 399753 401225 R Derived by automated computational analysis using gene prediction method: Protein Homology.; betaine-aldehyde dehydrogenase complement(399753..401225) Escherichia coli LY180 16978063 YP_008563533.1 CDS LY180_01945 NC_022364.1 401239 401826 R HTH-type; bet1; Repressor involved in choline regulation of the bet genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; BetI family transcriptional regulator complement(401239..401826) Escherichia coli LY180 16978064 YP_008563534.1 CDS LY180_01950 NC_022364.1 401955 403988 D proton-motive-force-driven choline transporter; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; choline transporter BetT 401955..403988 Escherichia coli LY180 16978065 YP_008563535.1 CDS LY180_01955 NC_022364.1 404495 408544 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 404495..408544 Escherichia coli LY180 16978066 YP_008563536.1 CDS LY180_01960 NC_022364.1 408686 409774 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 408686..409774 Escherichia coli LY180 16978067 YP_008563537.1 CDS LY180_01965 NC_022364.1 409816 410748 R activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(409816..410748) Escherichia coli LY180 16978068 YP_008563538.1 CDS LY180_01970 NC_022364.1 410840 411337 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(410840..411337) Escherichia coli LY180 16978069 YP_008563539.1 CDS LY180_01975 NC_022364.1 411595 412200 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ankyrin 411595..412200 Escherichia coli LY180 16978070 YP_008563540.1 CDS LY180_01980 NC_022364.1 413093 414640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 413093..414640 Escherichia coli LY180 16982295 YP_008563541.1 CDS LY180_01985 NC_022364.1 414640 416058 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 414640..416058 Escherichia coli LY180 16978072 YP_008563542.1 CDS LY180_01990 NC_022364.1 416201 417151 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 416201..417151 Escherichia coli LY180 16978073 YP_008563543.1 CDS LY180_01995 NC_022364.1 417161 418543 D metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; deaminase 417161..418543 Escherichia coli LY180 16978074 YP_008563544.1 CDS LY180_02000 NC_022364.1 418812 419252 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 418812..419252 Escherichia coli LY180 16978075 YP_008563545.1 CDS LY180_02005 NC_022364.1 419503 420489 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 419503..420489 Escherichia coli LY180 16978076 YP_008563546.1 CDS LY180_02010 NC_022364.1 420538 422022 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter ATP-binding protein 420538..422022 Escherichia coli LY180 16978077 YP_008563547.1 CDS LY180_02015 NC_022364.1 422015 422986 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 422015..422986 Escherichia coli LY180 16978078 YP_008563548.1 CDS LY180_02020 NC_022364.1 422983 423939 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 422983..423939 Escherichia coli LY180 16978079 YP_008563549.1 CDS LY180_02025 NC_022364.1 424026 425075 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-binding dehydrogenase 424026..425075 Escherichia coli LY180 16978080 YP_008563550.1 CDS LY180_02030 NC_022364.1 426546 426791 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 426546..426791 Escherichia coli LY180 16982298 YP_008563551.1 CDS LY180_02035 NC_022364.1 426808 427455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(426808..427455) Escherichia coli LY180 16978082 YP_008563552.1 CDS LY180_02040 NC_022364.1 427626 427901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 427626..427901 Escherichia coli LY180 16978083 YP_008563553.1 CDS LY180_02045 NC_022364.1 428002 429588 R sigma-54 dependent activator family protein; activates the prpBCDE operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate catabolism operon regulatory protein PrpR complement(428002..429588) Escherichia coli LY180 16978084 YP_008563554.1 CDS prpB NC_022364.1 429827 430717 D catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylisocitrate lyase 429827..430717 Escherichia coli LY180 16978085 YP_008563555.1 CDS LY180_02055 NC_022364.1 430762 431931 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylcitrate synthase 430762..431931 Escherichia coli LY180 16978086 YP_008563556.1 CDS prpD NC_022364.1 431965 433416 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-methylcitrate dehydratase 431965..433416 Escherichia coli LY180 16978087 YP_008563557.1 CDS prpE NC_022364.1 433456 435342 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase 433456..435342 Escherichia coli LY180 16978088 YP_008563558.1 CDS codB NC_022364.1 435579 436838 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine permease 435579..436838 Escherichia coli LY180 16978089 YP_008563559.1 CDS LY180_02075 NC_022364.1 436828 438111 D Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytosine deaminase 436828..438111 Escherichia coli LY180 16978090 YP_008563560.1 CDS LY180_02080 NC_022364.1 438151 439050 R controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator complement(438151..439050) Escherichia coli LY180 16978091 YP_008563561.1 CDS LY180_02085 NC_022364.1 439160 439819 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbonic anhydrase 439160..439819 Escherichia coli LY180 16978092 YP_008563562.1 CDS LY180_02090 NC_022364.1 439850 440320 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyanate hydratase 439850..440320 Escherichia coli LY180 16978093 YP_008563563.1 CDS cynX NC_022364.1 440353 441507 D MFS transporter family member induced in the presence of cyanate as part of a 3 gene operon; not essential; Derived by automated computational analysis using gene prediction method: Protein Homology.; major facilitator transporter 440353..441507 Escherichia coli LY180 16978094 YP_008563564.1 CDS LY180_02100 NC_022364.1 441610 442170 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase complement(441610..442170) Escherichia coli LY180 16978095 YP_008563565.1 CDS lacY NC_022364.1 442287 443540 R lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactoside permease complement(442287..443540) Escherichia coli LY180 16978096 YP_008563566.1 CDS lacZ NC_022364.1 443592 446666 R forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase complement(443592..446666) Escherichia coli LY180 16978097 YP_008563567.1 CDS lacI NC_022364.1 446789 447871 R transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; Derived by automated computational analysis using gene prediction method: Protein Homology.; lac repressor complement(446789..447871) Escherichia coli LY180 16978098 YP_008563568.1 CDS LY180_02120 NC_022364.1 447948 448895 R activator of 3-phenylpropionic acid catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(447948..448895) Escherichia coli LY180 16978099 YP_008563569.1 CDS mhpA NC_022364.1 448972 450636 D catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-(3-hydroxyphenyl)propionate hydroxylase 448972..450636 Escherichia coli LY180 16978100 YP_008563570.1 CDS mhpB NC_022364.1 450638 451582 D catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 450638..451582 Escherichia coli LY180 16978101 YP_008563571.1 CDS LY180_02135 NC_022364.1 451585 452466 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase 451585..452466 Escherichia coli LY180 16978102 YP_008563572.1 CDS LY180_02140 NC_022364.1 452476 453285 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-4-pentenoate hydratase 452476..453285 Escherichia coli LY180 16978103 YP_008563573.1 CDS LY180_02145 NC_022364.1 453282 454232 D catalyzes the formation of acetyl-CoA from acetalaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde dehydrogenase 453282..454232 Escherichia coli LY180 16978104 YP_008563574.1 CDS LY180_02150 NC_022364.1 454229 455242 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hyroxy-2-oxovalerate aldolase 454229..455242 Escherichia coli LY180 16978105 YP_008563575.1 CDS LY180_02155 NC_022364.1 455418 456629 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 455418..456629 Escherichia coli LY180 16978106 YP_008563576.1 CDS LY180_02160 NC_022364.1 456731 457270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 456731..457270 Escherichia coli LY180 16978107 YP_008563577.1 CDS LY180_02165 NC_022364.1 457496 458329 R Derived by automated computational analysis using gene prediction method: Protein Homology.; S-formylglutathione hydrolase complement(457496..458329) Escherichia coli LY180 16978108 YP_008563578.1 CDS LY180_02170 NC_022364.1 458422 459531 R catalyzes the formation of S-formylglutathione from S-(hydroxymethyl)glutathione; also catalyzes the formation of aldehyde or ketone from alcohols; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-(hydroxymethyl)glutathione dehydrogenase complement(458422..459531) Escherichia coli LY180 16978109 YP_008563579.1 CDS LY180_02175 NC_022364.1 459566 459841 R DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(459566..459841) Escherichia coli LY180 16978110 YP_008563580.1 CDS LY180_02180 NC_022364.1 460026 460799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(460026..460799) Escherichia coli LY180 16978111 YP_008563581.1 CDS LY180_02185 NC_022364.1 460801 461493 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase complement(460801..461493) Escherichia coli LY180 16978112 YP_008563582.1 CDS LY180_02190 NC_022364.1 461570 461761 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 461570..461761 Escherichia coli LY180 16978113 YP_008563583.1 CDS LY180_02195 NC_022364.1 461902 463110 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 461902..463110 Escherichia coli LY180 16978114 YP_008563584.1 CDS LY180_02200 NC_022364.1 463079 463894 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(463079..463894) Escherichia coli LY180 16978115 YP_008563585.1 CDS LY180_02205 NC_022364.1 463904 464575 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(463904..464575) Escherichia coli LY180 16978116 YP_008563586.1 CDS tauA NC_022364.1 465191 466153 D with TauB and TauC is responsible for taurine uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter substrate-binding protein 465191..466153 Escherichia coli LY180 16978117 YP_008563587.1 CDS ssuB NC_022364.1 466166 466933 D part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; aliphatic sulfonate ABC transporter ATP-binding protein 466166..466933 Escherichia coli LY180 16978118 YP_008563588.1 CDS LY180_02220 NC_022364.1 466930 467757 D Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter permease 466930..467757 Escherichia coli LY180 16978119 YP_008563589.1 CDS tauD NC_022364.1 467754 468605 D catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine dioxygenase 467754..468605 Escherichia coli LY180 16978120 YP_008563590.1 CDS LY180_02230 NC_022364.1 468712 469686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; delta-aminolevulinic acid dehydratase complement(468712..469686) Escherichia coli LY180 16978121 YP_008563591.1 CDS LY180_02235 NC_022364.1 470263 471471 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(470263..471471) Escherichia coli LY180 16978122 YP_008563592.1 CDS LY180_02240 NC_022364.1 471544 472836 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase 471544..472836 Escherichia coli LY180 16978123 YP_008563593.1 CDS LY180_02245 NC_022364.1 472955 473275 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 472955..473275 Escherichia coli LY180 16978124 YP_008563594.1 CDS adrA NC_022364.1 473377 474492 D catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 473377..474492 Escherichia coli LY180 16978125 YP_008563595.1 CDS LY180_02255 NC_022364.1 474509 475318 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrroline-5-carboxylate reductase complement(474509..475318) Escherichia coli LY180 16978126 YP_008563596.1 CDS LY180_02260 NC_022364.1 475438 475896 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 475438..475896 Escherichia coli LY180 16978127 YP_008563597.1 CDS aroL NC_022364.1 476079 476603 D type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate kinase 476079..476603 Escherichia coli LY180 16978128 YP_008563598.1 CDS LY180_02270 NC_022364.1 476653 476844 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 476653..476844 Escherichia coli LY180 16978129 YP_008563599.1 CDS LY180_02275 NC_022364.1 477102 477779 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 477102..477779 Escherichia coli LY180 16978130 YP_008563600.1 CDS LY180_02280 NC_022364.1 477851 478135 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 477851..478135 Escherichia coli LY180 16978131 YP_008563601.1 CDS LY180_02285 NC_022364.1 478451 478624 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 478451..478624 Escherichia coli LY180 16978132 YP_008563602.1 CDS rdgC NC_022364.1 478782 479759 R Required for efficient pilin antigenic variation; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase complement(478782..479759) Escherichia coli LY180 16978133 YP_008563603.1 CDS LY180_02300 NC_022364.1 479818 480726 D catalyzes phosphorylation of fructose; cytosolic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructokinase 479818..480726 Escherichia coli LY180 16978134 YP_008563604.1 CDS LY180_02305 NC_022364.1 480869 482137 R member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(480869..482137) Escherichia coli LY180 16978135 YP_008563605.1 CDS LY180_02310 NC_022364.1 482179 485322 R with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcC complement(482179..485322) Escherichia coli LY180 16978136 YP_008563606.1 CDS LY180_02315 NC_022364.1 485319 486521 R with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease subunit SbcD complement(485319..486521) Escherichia coli LY180 16978137 YP_008563607.1 CDS LY180_02320 NC_022364.1 486711 487400 D two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoB family transcriptional regulator 486711..487400 Escherichia coli LY180 16978138 YP_008563608.1 CDS phoR NC_022364.1 487458 488753 D membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate regulon sensor protein 487458..488753 Escherichia coli LY180 16978139 YP_008563609.1 CDS LY180_02330 NC_022364.1 489160 490479 D sodium:branched-chain amino acid symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter 2 carrier protein BrnQ 489160..490479 Escherichia coli LY180 16978140 YP_008563610.1 CDS proY NC_022364.1 490555 491928 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 490555..491928 Escherichia coli LY180 16978141 YP_008563611.1 CDS LY180_02340 NC_022364.1 492087 493901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltodextrin glucosidase 492087..493901 Escherichia coli LY180 16978142 YP_008563612.1 CDS LY180_02345 NC_022364.1 493906 494487 R Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP phosphodiesterase complement(493906..494487) Escherichia coli LY180 16978143 YP_008563613.1 CDS queA NC_022364.1 494580 495650 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 494580..495650 Escherichia coli LY180 16978144 YP_008563614.1 CDS tgt NC_022364.1 495706 496833 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); Derived by automated computational analysis using gene prediction method: Protein Homology.; queuine tRNA-ribosyltransferase 495706..496833 Escherichia coli LY180 16978145 YP_008563615.1 CDS yajC NC_022364.1 496856 497188 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit YajC 496856..497188 Escherichia coli LY180 16978146 YP_008563616.1 CDS secD NC_022364.1 497216 499063 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecD 497216..499063 Escherichia coli LY180 16978147 YP_008563617.1 CDS LY180_02370 NC_022364.1 499074 500045 D Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecF 499074..500045 Escherichia coli LY180 16978148 YP_008563618.1 CDS LY180_02375 NC_022364.1 500174 500521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 500174..500521 Escherichia coli LY180 16978149 YP_008563619.1 CDS LY180_02385 NC_022364.1 500698 501582 R receptor of phage T6 and colicin K; involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein Tsx complement(500698..501582) Escherichia coli LY180 16978151 YP_008563620.1 CDS LY180_02390 NC_022364.1 501881 502420 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(501881..502420) Escherichia coli LY180 16978152 YP_008563621.1 CDS LY180_02395 NC_022364.1 502571 503020 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NrdR family transcriptional regulator 502571..503020 Escherichia coli LY180 16978153 YP_008563622.1 CDS ribD NC_022364.1 503024 504127 D riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminohydroxyphosphoribosylaminopyrimidine deaminase 503024..504127 Escherichia coli LY180 16978154 YP_008563623.1 CDS ribH NC_022364.1 504216 504686 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6,7-dimethyl-8-ribityllumazine synthase 504216..504686 Escherichia coli LY180 16978155 YP_008563624.1 CDS nusB NC_022364.1 504706 505125 D Regulates rRNA biosynthesis by transcriptional antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusB 504706..505125 Escherichia coli LY180 16978156 YP_008563625.1 CDS LY180_02415 NC_022364.1 505203 506180 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine monophosphate kinase 505203..506180 Escherichia coli LY180 16978157 YP_008563626.1 CDS LY180_02420 NC_022364.1 506158 506676 D hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase A 506158..506676 Escherichia coli LY180 16978158 YP_008563627.1 CDS LY180_02425 NC_022364.1 506730 507704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(506730..507704) Escherichia coli LY180 16978159 YP_008563628.1 CDS LY180_02430 NC_022364.1 507884 509746 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-deoxy-D-xylulose-5-phosphate synthase complement(507884..509746) Escherichia coli LY180 16978160 YP_008563629.1 CDS LY180_02435 NC_022364.1 509771 510670 R Derived by automated computational analysis using gene prediction method: Protein Homology.; geranyltranstransferase complement(509771..510670) Escherichia coli LY180 16978161 YP_008563630.1 CDS LY180_02440 NC_022364.1 510670 510912 R catalyzes the bidirectional exonucleolytic cleavage of DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII small subunit complement(510670..510912) Escherichia coli LY180 16978162 YP_008563631.1 CDS LY180_02445 NC_022364.1 511118 512566 D catalyzes the conversion of uridine to 4-thiouridinine tRNA; also required for the synthesis of the thiazole moiety; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA s(4)U8 sulfurtransferase 511118..512566 Escherichia coli LY180 16978163 YP_008563632.1 CDS LY180_02450 NC_022364.1 512620 513210 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative-stress-resistance chaperone complement(512620..513210) Escherichia coli LY180 16978164 YP_008563633.1 CDS LY180_02455 NC_022364.1 513173 514084 R ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydropantoate 2-reductase complement(513173..514084) Escherichia coli LY180 16978165 YP_008563634.1 CDS LY180_02460 NC_022364.1 514252 514743 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide-binding protein 514252..514743 Escherichia coli LY180 16978166 YP_008563635.1 CDS LY180_02465 NC_022364.1 514871 516235 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(514871..516235) Escherichia coli LY180 16978167 YP_008563636.1 CDS LY180_02470 NC_022364.1 517623 518165 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; acetyltransferase complement(517623..518165) Escherichia coli LY180 16978168 YP_008563637.1 CDS LY180_02475 NC_022364.1 518149 518460 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(518149..518460) Escherichia coli LY180 16978169 YP_008563638.1 CDS LY180_02480 NC_022364.1 518645 519535 R converts protoheme IX and farnesyl diphosphate to heme O; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(518645..519535) Escherichia coli LY180 16978170 YP_008563639.1 CDS LY180_02485 NC_022364.1 519547 519876 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(519547..519876) Escherichia coli LY180 16978171 YP_008563640.1 CDS LY180_02490 NC_022364.1 519876 520490 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(519876..520490) Escherichia coli LY180 16978172 YP_008563641.1 CDS LY180_02495 NC_022364.1 520480 522471 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(520480..522471) Escherichia coli LY180 16978173 YP_008563642.1 CDS LY180_02500 NC_022364.1 522493 523440 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome O ubiquinol oxidase complement(522493..523440) Escherichia coli LY180 16978174 YP_008563643.1 CDS ampG NC_022364.1 523900 525375 R in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; muropeptide transporter complement(523900..525375) Escherichia coli LY180 16978175 YP_008563644.1 CDS LY180_02510 NC_022364.1 525419 525997 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(525419..525997) Escherichia coli LY180 16978176 YP_008563645.1 CDS LY180_02515 NC_022364.1 526302 526619 D positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; BolA family transcriptional regulator 526302..526619 Escherichia coli LY180 16978177 YP_008563646.1 CDS LY180_02520 NC_022364.1 526628 526816 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 526628..526816 Escherichia coli LY180 16978178 YP_008563647.1 CDS LY180_02525 NC_022364.1 526963 528261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; trigger factor 526963..528261 Escherichia coli LY180 16978179 YP_008563648.1 CDS LY180_02530 NC_022364.1 528507 529130 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Clp protease proteolytic subunit ClpP 528507..529130 Escherichia coli LY180 16978180 YP_008563649.1 CDS clpX NC_022364.1 529256 530530 D binds and unfolds substrates as part of the ClpXP protease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease 529256..530530 Escherichia coli LY180 16978181 YP_008563650.1 CDS LY180_02540 NC_022364.1 530718 533072 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 530718..533072 Escherichia coli LY180 16978182 YP_008563651.1 CDS LY180_02545 NC_022364.1 533281 533553 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 533281..533553 Escherichia coli LY180 16978183 YP_008563652.1 CDS LY180_02550 NC_022364.1 533745 535616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; folding chaperone 533745..535616 Escherichia coli LY180 16978184 YP_008563653.1 CDS LY180_02555 NC_022364.1 535767 536138 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 535767..536138 Escherichia coli LY180 16978185 YP_008563654.1 CDS LY180_02560 NC_022364.1 536232 536630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioesterase 536232..536630 Escherichia coli LY180 16978186 YP_008563655.1 CDS LY180_02565 NC_022364.1 536682 537377 R YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; Derived by automated computational analysis using gene prediction method: Protein Homology.; queuosine biosynthesis protein QueC complement(536682..537377) Escherichia coli LY180 16978187 YP_008563656.1 CDS LY180_02570 NC_022364.1 537442 539142 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(537442..539142) Escherichia coli LY180 16978188 YP_008563657.1 CDS LY180_02575 NC_022364.1 539242 540060 D HMP-PP phosphatase; catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P); Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin pyrimidine pyrophosphate hydrolase 539242..540060 Escherichia coli LY180 16978189 YP_008563658.1 CDS LY180_02580 NC_022364.1 540213 540671 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 540213..540671 Escherichia coli LY180 16978190 YP_008563659.1 CDS LY180_02585 NC_022364.1 540701 542473 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 540701..542473 Escherichia coli LY180 16978191 YP_008563660.1 CDS LY180_02590 NC_022364.1 542466 544247 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein 542466..544247 Escherichia coli LY180 16978192 YP_008563661.1 CDS LY180_02595 NC_022364.1 544428 544766 D indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II 2 544428..544766 Escherichia coli LY180 16978193 YP_008563662.1 CDS LY180_02600 NC_022364.1 544796 546082 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ammonium transporter 544796..546082 Escherichia coli LY180 16978194 YP_008563663.1 CDS LY180_02605 NC_022364.1 546130 546990 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(546130..546990) Escherichia coli LY180 16978195 YP_008563664.1 CDS LY180_02610 NC_022364.1 547208 547780 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 547208..547780 Escherichia coli LY180 16978196 YP_008563665.1 CDS LY180_02615 NC_022364.1 547811 548122 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(547811..548122) Escherichia coli LY180 16978197 YP_008563666.1 CDS LY180_02620 NC_022364.1 548501 548854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 548501..548854 Escherichia coli LY180 16978198 YP_008563667.1 CDS LY180_02630 NC_022364.1 550610 551080 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(550610..551080) Escherichia coli LY180 16978200 YP_008563668.1 CDS LY180_02635 NC_022364.1 551196 551747 R Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose O-acetyltransferase complement(551196..551747) Escherichia coli LY180 16978201 YP_008563669.1 CDS LY180_02640 NC_022364.1 551919 552137 R with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; gene expression modulator complement(551919..552137) Escherichia coli LY180 16978202 YP_008563670.1 CDS LY180_02645 NC_022364.1 552163 552537 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Hha toxicity attenuator complement(552163..552537) Escherichia coli LY180 16978203 YP_008563671.1 CDS LY180_02650 NC_022364.1 553083 556232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(553083..556232) Escherichia coli LY180 16978204 YP_008563672.1 CDS LY180_02655 NC_022364.1 556255 557448 R with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(556255..557448) Escherichia coli LY180 16978205 YP_008563673.1 CDS LY180_02660 NC_022364.1 557590 558237 D regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 557590..558237 Escherichia coli LY180 16978206 YP_008563674.1 CDS LY180_02665 NC_022364.1 558365 561727 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 558365..561727 Escherichia coli LY180 16978207 YP_008563675.1 CDS LY180_02670 NC_022364.1 561939 562100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(561939..562100) Escherichia coli LY180 16978208 YP_008563676.1 CDS LY180_02675 NC_022364.1 562114 562641 R PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal replication protein N'' complement(562114..562641) Escherichia coli LY180 16978209 YP_008563677.1 CDS LY180_02680 NC_022364.1 562711 563088 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 562711..563088 Escherichia coli LY180 16978210 YP_008563678.1 CDS LY180_02685 NC_022364.1 563241 563792 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine phosphoribosyltransferase 563241..563792 Escherichia coli LY180 16978211 YP_008563679.1 CDS LY180_02690 NC_022364.1 563921 565852 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunits gamma and tau 563921..565852 Escherichia coli LY180 16978212 YP_008563680.1 CDS LY180_02695 NC_022364.1 565905 566234 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 565905..566234 Escherichia coli LY180 16978213 YP_008563681.1 CDS recR NC_022364.1 566234 566839 D involved in a recombinational process of DNA repair, independent of the recBC complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecR 566234..566839 Escherichia coli LY180 16978214 YP_008563682.1 CDS LY180_02705 NC_022364.1 566949 568823 D molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein 90 566949..568823 Escherichia coli LY180 16978215 YP_008563683.1 CDS adk NC_022364.1 569004 569648 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate kinase 569004..569648 Escherichia coli LY180 16978216 YP_008563684.1 CDS LY180_02715 NC_022364.1 569884 570846 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferrochelatase 569884..570846 Escherichia coli LY180 16978217 YP_008563685.1 CDS LY180_02720 NC_022364.1 570843 571802 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl esterase complement(570843..571802) Escherichia coli LY180 16978218 YP_008563686.1 CDS LY180_02725 NC_022364.1 571954 573258 D catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/guanosine kinase 571954..573258 Escherichia coli LY180 16978219 YP_008563687.1 CDS LY180_02730 NC_022364.1 573391 575067 R YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation:proton antiport protein complement(573391..575067) Escherichia coli LY180 16978220 YP_008563688.1 CDS LY180_02735 NC_022364.1 575305 576525 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fosmidomycin resistance protein complement(575305..576525) Escherichia coli LY180 16978221 YP_008563689.1 CDS ushA NC_022364.1 576743 578395 D catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 576743..578395 Escherichia coli LY180 16978222 YP_008563690.1 CDS LY180_02745 NC_022364.1 578432 578911 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(578432..578911) Escherichia coli LY180 16978223 YP_008563691.1 CDS LY180_02750 NC_022364.1 579115 579909 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(579115..579909) Escherichia coli LY180 16978224 YP_008563692.1 CDS LY180_02755 NC_022364.1 579993 580388 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 579993..580388 Escherichia coli LY180 16978225 YP_008563693.1 CDS copA NC_022364.1 580502 583006 R Derived by automated computational analysis using gene prediction method: Protein Homology.; copper exporting ATPase complement(580502..583006) Escherichia coli LY180 16978226 YP_008563694.1 CDS LY180_02765 NC_022364.1 583268 584200 D catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminase 583268..584200 Escherichia coli LY180 16978227 YP_008563695.1 CDS LY180_02770 NC_022364.1 584203 585495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 584203..585495 Escherichia coli LY180 16978228 YP_008563696.1 CDS LY180_02775 NC_022364.1 585620 586027 D activator of copper-responsive regulon genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 585620..586027 Escherichia coli LY180 16978229 YP_008563697.1 CDS LY180_02780 NC_022364.1 586028 586486 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(586028..586486) Escherichia coli LY180 16978230 YP_008563698.1 CDS LY180_02785 NC_022364.1 586483 587400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(586483..587400) Escherichia coli LY180 16978231 YP_008563699.1 CDS LY180_02790 NC_022364.1 587546 588223 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; putrescine/spermidine ABC transporter ATP-binding protein 587546..588223 Escherichia coli LY180 16978232 YP_008563700.1 CDS LY180_02795 NC_022364.1 588210 588989 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 588210..588989 Escherichia coli LY180 16978233 YP_008563701.1 CDS LY180_02800 NC_022364.1 589052 589906 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(589052..589906) Escherichia coli LY180 16978234 YP_008563702.1 CDS LY180_02805 NC_022364.1 589967 590776 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(589967..590776) Escherichia coli LY180 16978235 YP_008563703.1 CDS LY180_02810 NC_022364.1 590766 591392 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 complement(590766..591392) Escherichia coli LY180 16978236 YP_008563704.1 CDS LY180_02815 NC_022364.1 591360 592046 D ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsE 591360..592046 Escherichia coli LY180 16978237 YP_008563705.1 CDS LY180_02820 NC_022364.1 592043 594457 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 592043..594457 Escherichia coli LY180 16978238 YP_008563706.1 CDS LY180_02825 NC_022364.1 594887 599176 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rhsA 594887..599176 Escherichia coli LY180 16978239 YP_008563707.1 CDS LY180_02830 NC_022364.1 599216 599584 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 599216..599584 Escherichia coli LY180 16978240 YP_008563708.1 CDS LY180_02835 NC_022364.1 599584 600294 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 599584..600294 Escherichia coli LY180 16978241 YP_008563709.1 CDS LY180_02840 NC_022364.1 600275 600766 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 600275..600766 Escherichia coli LY180 16978242 YP_008563710.1 CDS LY180_02845 NC_022364.1 601281 601652 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(601281..601652) Escherichia coli LY180 16978243 YP_008563711.1 CDS LY180_02850 NC_022364.1 601768 602862 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA 2-selenouridine synthase complement(601768..602862) Escherichia coli LY180 16978244 YP_008563712.1 CDS LY180_02855 NC_022364.1 602931 603857 R activator of the allDC-ylbA operon involved in allantoin utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(602931..603857) Escherichia coli LY180 16978245 YP_008563713.1 CDS LY180_02860 NC_022364.1 604087 604569 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate hydrolase 604087..604569 Escherichia coli LY180 16978246 YP_008563714.1 CDS LY180_02865 NC_022364.1 604647 605462 D regulates operons involved in the utilization of allantoin; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator 604647..605462 Escherichia coli LY180 16978247 YP_008563715.1 CDS LY180_02870 NC_022364.1 605552 607333 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxylate carboligase 605552..607333 Escherichia coli LY180 16978248 YP_008563716.1 CDS LY180_02875 NC_022364.1 607346 608122 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 607346..608122 Escherichia coli LY180 16978249 YP_008563717.1 CDS LY180_02880 NC_022364.1 608222 609100 D NADH-dependent; catalyzed the reversible formation of glycerate from tartronate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase 608222..609100 Escherichia coli LY180 16978250 YP_008563718.1 CDS LY180_02885 NC_022364.1 609269 610723 D Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoin permease 609269..610723 Escherichia coli LY180 16978251 YP_008563719.1 CDS LY180_02890 NC_022364.1 610783 612144 D Plays a crucial role on both purine and pyrimidine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoinase 610783..612144 Escherichia coli LY180 16978252 YP_008563720.1 CDS LY180_02895 NC_022364.1 612201 613502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 612201..613502 Escherichia coli LY180 16978253 YP_008563721.1 CDS LY180_02900 NC_022364.1 613524 614669 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase 613524..614669 Escherichia coli LY180 16978254 YP_008563722.1 CDS LY180_02905 NC_022364.1 614798 615583 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(614798..615583) Escherichia coli LY180 16978255 YP_008563723.1 CDS LY180_02910 NC_022364.1 615594 616829 R Derived by automated computational analysis using gene prediction method: Protein Homology.; allantoate amidohydrolase complement(615594..616829) Escherichia coli LY180 16978256 YP_008563724.1 CDS LY180_02915 NC_022364.1 616851 617900 R catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ureidoglycolate dehydrogenase complement(616851..617900) Escherichia coli LY180 16978257 YP_008563725.1 CDS LY180_02920 NC_022364.1 618217 619884 D multicopy suppressor of dominant negative ftsH mutations; putative acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 618217..619884 Escherichia coli LY180 16978258 YP_008563726.1 CDS LY180_02925 NC_022364.1 619894 621153 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 619894..621153 Escherichia coli LY180 16978259 YP_008563727.1 CDS LY180_02930 NC_022364.1 621164 621979 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 621164..621979 Escherichia coli LY180 16978260 YP_008563728.1 CDS LY180_02935 NC_022364.1 621976 622869 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 621976..622869 Escherichia coli LY180 16978261 YP_008563729.1 CDS LY180_02940 NC_022364.1 623006 624073 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole carboxylase complement(623006..624073) Escherichia coli LY180 16978262 YP_008563730.1 CDS purE NC_022364.1 624070 624579 R catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-carboxyaminoimidazole ribonucleotide mutase complement(624070..624579) Escherichia coli LY180 16978263 YP_008563731.1 CDS LY180_02950 NC_022364.1 624697 625419 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-2,3-diacylglucosamine hydrolase complement(624697..625419) Escherichia coli LY180 16978264 YP_008563732.1 CDS LY180_02955 NC_022364.1 625422 625916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(625422..625916) Escherichia coli LY180 16978265 YP_008563733.1 CDS cysS NC_022364.1 626090 627475 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteinyl-tRNA synthetase 626090..627475 Escherichia coli LY180 16978266 YP_008563734.1 CDS LY180_02965 NC_022364.1 627511 628032 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(627511..628032) Escherichia coli LY180 16978267 YP_008563735.1 CDS LY180_02970 NC_022364.1 628140 628352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(628140..628352) Escherichia coli LY180 16978268 YP_008563736.1 CDS LY180_02975 NC_022364.1 628354 629220 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methenyltetrahydrofolate cyclohydrolase complement(628354..629220) Escherichia coli LY180 16978269 YP_008563737.1 CDS fimA NC_022364.1 629701 630243 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 629701..630243 Escherichia coli LY180 16978270 YP_008563738.1 CDS LY180_02985 NC_022364.1 630463 631155 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 630463..631155 Escherichia coli LY180 16978271 YP_008563739.1 CDS fimH NC_022364.1 633807 634814 D involved in the regulation of fimbriae length and mediates adhesion of type 1 fimbriae; Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin 633807..634814 Escherichia coli LY180 16982287 YP_008563740.1 CDS LY180_02995 NC_022364.1 634825 635340 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 634825..635340 Escherichia coli LY180 16978273 YP_008563741.1 CDS LY180_03000 NC_022364.1 635343 635990 R activates the production of the major fimbrae protein FimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(635343..635990) Escherichia coli LY180 16978274 YP_008563742.1 CDS LY180_03010 NC_022364.1 636340 637101 R regulates genes involved in arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(636340..637101) Escherichia coli LY180 16978276 YP_008563743.1 CDS LY180_03015 NC_022364.1 637284 638174 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(637284..638174) Escherichia coli LY180 16978277 YP_008563744.1 CDS LY180_03020 NC_022364.1 638175 641147 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(638175..641147) Escherichia coli LY180 16978278 YP_008563745.1 CDS nfrB NC_022364.1 641134 643371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase family 2 complement(641134..643371) Escherichia coli LY180 16978279 YP_008563746.1 CDS LY180_03030 NC_022364.1 643640 644776 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(643640..644776) Escherichia coli LY180 16978280 YP_008563747.1 CDS LY180_03035 NC_022364.1 644880 645191 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs complement(644880..645191) Escherichia coli LY180 16978281 YP_008563748.1 CDS LY180_03040 NC_022364.1 645306 645557 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(645306..645557) Escherichia coli LY180 16978282 YP_008563749.1 CDS LY180_03045 NC_022364.1 645554 647353 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs complement(645554..647353) Escherichia coli LY180 16978283 YP_008563750.1 CDS LY180_03050 NC_022364.1 647600 648013 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(647600..648013) Escherichia coli LY180 16978284 YP_008563751.1 CDS LY180_03055 NC_022364.1 648013 650157 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar-binding protein complement(648013..650157) Escherichia coli LY180 16978285 YP_008563752.1 CDS LY180_03060 NC_022364.1 650284 650823 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(650284..650823) Escherichia coli LY180 16978286 YP_008563753.1 CDS LY180_03065 NC_022364.1 650811 655631 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs complement(650811..655631) Escherichia coli LY180 16978287 YP_008563754.1 CDS LY180_03070 NC_022364.1 655651 656112 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(655651..656112) Escherichia coli LY180 16978288 YP_008563755.1 CDS LY180_03075 NC_022364.1 656140 658041 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Vgr protein complement(656140..658041) Escherichia coli LY180 16978289 YP_008563756.1 CDS LY180_03080 NC_022364.1 658778 660226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor kinase CusS complement(658778..660226) Escherichia coli LY180 16978290 YP_008563757.1 CDS LY180_03085 NC_022364.1 660216 660899 R response regulator in two-component regulatory system with CusS; regulates the copper efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(660216..660899) Escherichia coli LY180 16978291 YP_008563758.1 CDS LY180_03090 NC_022364.1 661056 662438 D with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 661056..662438 Escherichia coli LY180 16978292 YP_008563759.1 CDS LY180_03095 NC_022364.1 662462 662794 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 662462..662794 Escherichia coli LY180 16978293 YP_008563760.1 CDS LY180_03100 NC_022364.1 662810 664033 D with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; Derived by automated computational analysis using gene prediction method: Protein Homology.; metal RND transporter 662810..664033 Escherichia coli LY180 16978294 YP_008563761.1 CDS LY180_03105 NC_022364.1 664045 667188 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transporter 664045..667188 Escherichia coli LY180 16978295 YP_008563762.1 CDS LY180_03110 NC_022364.1 667290 668666 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid transporter 667290..668666 Escherichia coli LY180 16978296 YP_008563763.1 CDS LY180_03115 NC_022364.1 668734 669981 R Derived by automated computational analysis using gene prediction method: Protein Homology.; miniconductance mechanosensitive channel complement(668734..669981) Escherichia coli LY180 16978297 YP_008563764.1 CDS LY180_03120 NC_022364.1 670089 670742 R catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteridine reductase complement(670089..670742) Escherichia coli LY180 16978298 YP_008563765.1 CDS LY180_03125 NC_022364.1 670836 671204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(670836..671204) Escherichia coli LY180 16978299 YP_008563766.1 CDS LY180_03130 NC_022364.1 671269 671517 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(671269..671517) Escherichia coli LY180 16978300 YP_008563767.1 CDS LY180_03135 NC_022364.1 671583 672701 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl:cysteine ligase complement(671583..672701) Escherichia coli LY180 16978301 YP_008563768.1 CDS LY180_03140 NC_022364.1 672776 672877 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 672776..672877 Escherichia coli LY180 16978302 YP_008563769.1 CDS LY180_03145 NC_022364.1 673143 673295 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 673143..673295 Escherichia coli LY180 16978303 YP_008563770.1 CDS LY180_03150 NC_022364.1 673547 673798 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 673547..673798 Escherichia coli LY180 16978304 YP_008563771.1 CDS LY180_03155 NC_022364.1 673920 674549 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase complement(673920..674549) Escherichia coli LY180 16978305 YP_008563772.1 CDS LY180_03165 NC_022364.1 674715 676955 R Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane receptor FepA complement(674715..676955) Escherichia coli LY180 16978306 YP_008563773.1 CDS LY180_03170 NC_022364.1 677198 678400 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; enterobactin/ferric enterobactin esterase 677198..678400 Escherichia coli LY180 16978307 YP_008563774.1 CDS LY180_03175 NC_022364.1 678403 678621 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 678403..678621 Escherichia coli LY180 16978308 YP_008563775.1 CDS entF NC_022364.1 678618 682499 D with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit F 678618..682499 Escherichia coli LY180 16978309 YP_008563776.1 CDS LY180_03185 NC_022364.1 682715 683848 D in Salmonella is responsible for long O-antigen polymerization; may be part of the ferric enterobactin transport system; necessary for enetrobactin uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 682715..683848 Escherichia coli LY180 16978310 YP_008563777.1 CDS LY180_03190 NC_022364.1 683845 684660 R with FepBDE is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter ATP-binding protein complement(683845..684660) Escherichia coli LY180 16978311 YP_008563778.1 CDS LY180_03195 NC_022364.1 684657 685649 R with FepBCD is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter permease complement(684657..685649) Escherichia coli LY180 16978312 YP_008563779.1 CDS LY180_03200 NC_022364.1 685646 686650 R with FepBCG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-enterobactin transporter membrane protein complement(685646..686650) Escherichia coli LY180 16978313 YP_008563780.1 CDS LY180_03205 NC_022364.1 686761 688011 D protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin exporter EntS 686761..688011 Escherichia coli LY180 16978314 YP_008563781.1 CDS LY180_03210 NC_022364.1 688015 688971 R with FepCDG is involved in the transport of ferric enterobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antibiotic ABC transporter substrate-binding protein complement(688015..688971) Escherichia coli LY180 16978315 YP_008563782.1 CDS LY180_03215 NC_022364.1 689346 690521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase EntC 689346..690521 Escherichia coli LY180 16978316 YP_008563783.1 CDS entE NC_022364.1 690531 692141 D bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; Derived by automated computational analysis using gene prediction method: Protein Homology.; enterobactin synthase subunit E 690531..692141 Escherichia coli LY180 16978317 YP_008563784.1 CDS LY180_03225 NC_022364.1 692155 693012 D 2,3 dihydro-2,3 dihydroxybenzoate synthase; catalyzes the formation of 2,3 dihydro-2,3 dihydroxybenzoate and pyruvate from isochorismate; with Ent DEF is involved in enterobactin synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismatase 692155..693012 Escherichia coli LY180 16978318 YP_008563785.1 CDS LY180_03230 NC_022364.1 693012 693758 D catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-dihydroxybenzoate-2,3-dehydrogenase 693012..693758 Escherichia coli LY180 16978319 YP_008563786.1 CDS LY180_03235 NC_022364.1 693761 694174 D required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase 693761..694174 Escherichia coli LY180 16978320 YP_008563787.1 CDS LY180_03240 NC_022364.1 694355 696460 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein A 694355..696460 Escherichia coli LY180 16978321 YP_008563788.1 CDS LY180_03245 NC_022364.1 696642 696839 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 696642..696839 Escherichia coli LY180 16978322 YP_008563789.1 CDS LY180_03250 NC_022364.1 696849 697937 R member of the iron-containing alcohol dehydrogenase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(696849..697937) Escherichia coli LY180 16978323 YP_008563790.1 CDS LY180_03255 NC_022364.1 698046 699206 D catalyzes the transfer of an amino moiety; preference for methionine followed by histidine and phenylalanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 698046..699206 Escherichia coli LY180 16978324 YP_008563791.1 CDS LY180_03260 NC_022364.1 699207 699824 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(699207..699824) Escherichia coli LY180 16978325 YP_008563792.1 CDS LY180_03265 NC_022364.1 699809 701029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(699809..701029) Escherichia coli LY180 16978326 YP_008563793.1 CDS LY180_03270 NC_022364.1 701176 702078 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(701176..702078) Escherichia coli LY180 16978327 YP_008563794.1 CDS dsbG NC_022364.1 702287 703033 R Involved in disulfide bond formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide isomerase complement(702287..703033) Escherichia coli LY180 16978328 YP_008563795.1 CDS LY180_03280 NC_022364.1 703405 703968 D with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit C 703405..703968 Escherichia coli LY180 16978329 YP_008563796.1 CDS LY180_03285 NC_022364.1 704024 704140 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(704024..704140) Escherichia coli LY180 16978330 YP_008563797.1 CDS LY180_03290 NC_022364.1 704139 705704 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alkyl hydroperoxide reductase subunit F 704139..705704 Escherichia coli LY180 16978331 YP_008563798.1 CDS LY180_03295 NC_022364.1 705825 706253 R interacts with GroEL; is induced by starvation, heat shock and toxic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein G complement(705825..706253) Escherichia coli LY180 16978332 YP_008563799.1 CDS LY180_03300 NC_022364.1 706474 707712 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 706474..707712 Escherichia coli LY180 16978333 YP_008563800.1 CDS LY180_03305 NC_022364.1 707716 707805 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(707716..707805) Escherichia coli LY180 16978334 YP_008563801.1 CDS LY180_03310 NC_022364.1 707943 708353 R Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase regulator complement(707943..708353) Escherichia coli LY180 16978335 YP_008563802.1 CDS LY180_03315 NC_022364.1 708583 709389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease I complement(708583..709389) Escherichia coli LY180 16978336 YP_008563803.1 CDS LY180_03320 NC_022364.1 709503 710966 R involved in the transport of citrate into the cell along with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(709503..710966) Escherichia coli LY180 16978337 YP_008563804.1 CDS citG NC_022364.1 711017 711895 R catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; triphosphoribosyl-dephospho-CoA synthase complement(711017..711895) Escherichia coli LY180 16978338 YP_008563805.1 CDS citX NC_022364.1 711870 712421 R 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase complement(711870..712421) Escherichia coli LY180 16978339 YP_008563806.1 CDS LY180_03335 NC_022364.1 712425 713957 R citrate-ACP transferase, the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit alpha complement(712425..713957) Escherichia coli LY180 16978340 YP_008563807.1 CDS LY180_03340 NC_022364.1 713968 714876 R citryl-ACP lyase; catalyzes the formation of acetate and oxaloacetate from citrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit beta complement(713968..714876) Escherichia coli LY180 16978341 YP_008563808.1 CDS LY180_03345 NC_022364.1 714873 715169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate lyase subunit gamma complement(714873..715169) Escherichia coli LY180 16978342 YP_008563809.1 CDS LY180_03350 NC_022364.1 715184 716242 R activates citrate lyase by acetylation of the gamma subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; [citrate [pro-3S]-lyase] ligase complement(715184..716242) Escherichia coli LY180 16978343 YP_008563810.1 CDS dpiB NC_022364.1 716622 718280 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase DpiB 716622..718280 Escherichia coli LY180 16978344 YP_008563811.1 CDS dpiA NC_022364.1 718249 718929 D regulates the expression of citrate fermentation genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; two-protein response regulator DpiA 718249..718929 Escherichia coli LY180 16978345 YP_008563812.1 CDS dcuC NC_022364.1 718970 720355 R responsible for the transport of C4-dicarboxylates during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(718970..720355) Escherichia coli LY180 16978346 YP_008563813.1 CDS pagP NC_022364.1 720943 721503 D catalyzes the transfer of palmitate to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid:lipid A palmitoyltransferase 720943..721503 Escherichia coli LY180 16978347 YP_008563814.1 CDS LY180_03375 NC_022364.1 721678 721887 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator 721678..721887 Escherichia coli LY180 16978348 YP_008563815.1 CDS LY180_03380 NC_022364.1 721941 722324 R camphor resistance protein CrcB; may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; camphor resistance protein CrcB complement(721941..722324) Escherichia coli LY180 16978349 YP_008563816.1 CDS LY180_03385 NC_022364.1 722417 723205 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 722417..723205 Escherichia coli LY180 16978350 YP_008563817.1 CDS tatE NC_022364.1 723334 723537 D TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatE 723334..723537 Escherichia coli LY180 16978351 YP_008563818.1 CDS LY180_03395 NC_022364.1 723638 724603 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoyl synthase complement(723638..724603) Escherichia coli LY180 16978352 YP_008563819.1 CDS LY180_03400 NC_022364.1 724812 725765 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(724812..725765) Escherichia coli LY180 16978353 YP_008563820.1 CDS LY180_03405 NC_022364.1 726024 726665 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase B complement(726024..726665) Escherichia coli LY180 16978354 YP_008563821.1 CDS LY180_03410 NC_022364.1 726766 727029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(726766..727029) Escherichia coli LY180 16978355 YP_008563822.1 CDS LY180_03415 NC_022364.1 727140 728351 R penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(727140..728351) Escherichia coli LY180 16978356 YP_008563823.1 CDS LY180_03420 NC_022364.1 728491 729579 R septal ring protein, suppressor of prc, minor lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; rare lipoprotein A complement(728491..729579) Escherichia coli LY180 16978357 YP_008563824.1 CDS LY180_03425 NC_022364.1 729590 730702 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell wall shape-determining protein complement(729590..730702) Escherichia coli LY180 16978358 YP_008563825.1 CDS LY180_03430 NC_022364.1 730705 732606 R Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 2 complement(730705..732606) Escherichia coli LY180 16978359 YP_008563826.1 CDS LY180_03435 NC_022364.1 732637 733104 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(732637..733104) Escherichia coli LY180 16978360 YP_008563827.1 CDS LY180_03440 NC_022364.1 733108 733425 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated protein complement(733108..733425) Escherichia coli LY180 16978361 YP_008563828.1 CDS LY180_03445 NC_022364.1 733685 734296 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ribazole phosphatase complement(733685..734296) Escherichia coli LY180 16978362 YP_008563829.1 CDS LY180_03450 NC_022364.1 734320 734961 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinic acid mononucleotide adenylyltransferase complement(734320..734961) Escherichia coli LY180 16978363 YP_008563830.1 CDS holA NC_022364.1 734963 735994 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta complement(734963..735994) Escherichia coli LY180 16978364 YP_008563831.1 CDS LY180_03460 NC_022364.1 735994 736575 R rare lipoprotein B; involved in the assembly of LPS in the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; LPS-assembly lipoprotein RlpB complement(735994..736575) Escherichia coli LY180 16978365 YP_008563832.1 CDS leuS NC_022364.1 736590 739172 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl-tRNA synthetase complement(736590..739172) Escherichia coli LY180 16978366 YP_008563833.1 CDS LY180_03470 NC_022364.1 739407 739889 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 739407..739889 Escherichia coli LY180 16978367 YP_008563834.1 CDS LY180_03475 NC_022364.1 739959 740936 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(739959..740936) Escherichia coli LY180 16978368 YP_008563835.1 CDS LY180_03480 NC_022364.1 741100 741807 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 741100..741807 Escherichia coli LY180 16978369 YP_008563836.1 CDS LY180_03485 NC_022364.1 741804 743231 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone DnaJ 741804..743231 Escherichia coli LY180 16978370 YP_008563837.1 CDS LY180_03490 NC_022364.1 743241 743795 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(743241..743795) Escherichia coli LY180 16978371 YP_008563838.1 CDS LY180_03495 NC_022364.1 743896 744603 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 743896..744603 Escherichia coli LY180 16978372 YP_008563839.1 CDS LY180_03500 NC_022364.1 746111 747781 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone HscC complement(746111..747781) Escherichia coli LY180 16978373 YP_008563840.1 CDS rihA NC_022364.1 747865 748800 R Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase complement(747865..748800) Escherichia coli LY180 16978374 YP_008563841.1 CDS LY180_03510 NC_022364.1 748918 749643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein complement(748918..749643) Escherichia coli LY180 16978375 YP_008563842.1 CDS LY180_03515 NC_022364.1 749643 750317 R with GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate transporter permease GltK complement(749643..750317) Escherichia coli LY180 16978376 YP_008563843.1 CDS LY180_03520 NC_022364.1 750317 751057 R with GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate/aspartate ABC transporter permease GltJ complement(750317..751057) Escherichia coli LY180 16978377 YP_008563844.1 CDS LY180_03525 NC_022364.1 751227 752135 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid transporter complement(751227..752135) Escherichia coli LY180 16978378 YP_008563845.1 CDS LY180_03530 NC_022364.1 752590 753387 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rhomboid family protein 752590..753387 Escherichia coli LY180 16978379 YP_008563846.1 CDS LY180_03535 NC_022364.1 753486 754466 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptidase S54 753486..754466 Escherichia coli LY180 16978380 YP_008563847.1 CDS lnt NC_022364.1 754544 756082 R Transfers the fatty acyl group on membrane lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; apolipoprotein N-acyltransferase complement(754544..756082) Escherichia coli LY180 16978381 YP_008563848.1 CDS LY180_03545 NC_022364.1 756107 756985 R involved in the transport of magnesium and cobalt ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter complement(756107..756985) Escherichia coli LY180 16978382 YP_008563849.1 CDS LY180_03550 NC_022364.1 757075 757542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding heat shock protein complement(757075..757542) Escherichia coli LY180 16978383 YP_008563850.1 CDS LY180_03555 NC_022364.1 757539 758579 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase complement(757539..758579) Escherichia coli LY180 16978384 YP_008563851.1 CDS LY180_03560 NC_022364.1 758732 760156 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); Derived by automated computational analysis using gene prediction method: Protein Homology.; (dimethylallyl)adenosine tRNA methylthiotransferase complement(758732..760156) Escherichia coli LY180 16978385 YP_008563852.1 CDS ubiF NC_022364.1 760302 761477 D catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 760302..761477 Escherichia coli LY180 16978386 YP_008563853.1 CDS asnB NC_022364.1 762606 764270 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase B complement(762606..764270) Escherichia coli LY180 16978393 YP_008563854.1 CDS LY180_03605 NC_022364.1 764527 765279 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UMP phosphatase complement(764527..765279) Escherichia coli LY180 16978394 YP_008563855.1 CDS LY180_03610 NC_022364.1 765327 766547 R regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(765327..766547) Escherichia coli LY180 16978395 YP_008563856.1 CDS nagA NC_022364.1 766556 767704 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglucosamine-6-phosphate deacetylase complement(766556..767704) Escherichia coli LY180 16978396 YP_008563857.1 CDS nagB NC_022364.1 767763 768563 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine-6-phosphate deaminase complement(767763..768563) Escherichia coli LY180 16978397 YP_008563858.1 CDS LY180_03625 NC_022364.1 768896 770842 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylglucosamine transporter subunit IIABC 768896..770842 Escherichia coli LY180 16978398 YP_008563859.1 CDS LY180_03630 NC_022364.1 771045 772709 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase 771045..772709 Escherichia coli LY180 16978399 YP_008563860.1 CDS chiP NC_022364.1 773155 774561 D outer membrane porin involved in the transport of chitooligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; chitoporin 773155..774561 Escherichia coli LY180 16978400 YP_008563861.1 CDS LY180_03640 NC_022364.1 774611 774937 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 774611..774937 Escherichia coli LY180 16978401 YP_008563862.1 CDS fur NC_022364.1 775021 775467 R negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric uptake regulator complement(775021..775467) Escherichia coli LY180 16978402 YP_008563863.1 CDS LY180_03650 NC_022364.1 775756 776286 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(775756..776286) Escherichia coli LY180 16978403 YP_008563864.1 CDS LY180_03655 NC_022364.1 776426 776788 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA regulated protein complement(776426..776788) Escherichia coli LY180 16978404 YP_008563865.1 CDS LY180_03660 NC_022364.1 776859 777623 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(776859..777623) Escherichia coli LY180 16978405 YP_008563866.1 CDS LY180_03665 NC_022364.1 777808 778353 D negative modulator of the initiation of chromosome replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; replication initiation regulator SeqA 777808..778353 Escherichia coli LY180 16978406 YP_008563867.1 CDS LY180_03670 NC_022364.1 778379 780019 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucomutase 778379..780019 Escherichia coli LY180 16978407 YP_008563868.1 CDS potE NC_022364.1 780075 781394 R catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine transporter complement(780075..781394) Escherichia coli LY180 16978408 YP_008563869.1 CDS LY180_03680 NC_022364.1 781391 783598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(781391..783598) Escherichia coli LY180 16978409 YP_008563870.1 CDS LY180_03685 NC_022364.1 784279 784956 R response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(784279..784956) Escherichia coli LY180 16978410 YP_008563871.1 CDS LY180_03690 NC_022364.1 784953 787637 R sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein KdpD complement(784953..787637) Escherichia coli LY180 16978411 YP_008563872.1 CDS LY180_03695 NC_022364.1 787630 788202 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit C complement(787630..788202) Escherichia coli LY180 16978412 YP_008563873.1 CDS LY180_03700 NC_022364.1 788211 790259 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit B complement(788211..790259) Escherichia coli LY180 16978413 YP_008563874.1 CDS LY180_03705 NC_022364.1 790282 791955 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium-transporting ATPase subunit A complement(790282..791955) Escherichia coli LY180 16978414 YP_008563875.1 CDS kdpF NC_022364.1 791955 792044 R one of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; potassium transporter TrkA complement(791955..792044) Escherichia coli LY180 16978415 YP_008563876.1 CDS LY180_03715 NC_022364.1 792357 792563 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 792357..792563 Escherichia coli LY180 16978416 YP_008563877.1 CDS LY180_03720 NC_022364.1 792806 797005 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rhsA 792806..797005 Escherichia coli LY180 16978417 YP_008563878.1 CDS LY180_03725 NC_022364.1 797002 797571 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 797002..797571 Escherichia coli LY180 16978418 YP_008563879.1 CDS LY180_03730 NC_022364.1 797797 798051 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 797797..798051 Escherichia coli LY180 16978419 YP_008563880.1 CDS LY180_03740 NC_022364.1 799086 799595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 799086..799595 Escherichia coli LY180 16978421 YP_008563881.1 CDS LY180_03745 NC_022364.1 799592 801010 D UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribodipyrimidine photolyase 799592..801010 Escherichia coli LY180 16978422 YP_008563882.1 CDS LY180_03750 NC_022364.1 801052 802533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(801052..802533) Escherichia coli LY180 16978423 YP_008563883.1 CDS LY180_03755 NC_022364.1 802804 803547 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metal-binding protein 802804..803547 Escherichia coli LY180 16978424 YP_008563884.1 CDS LY180_03760 NC_022364.1 803570 804226 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 803570..804226 Escherichia coli LY180 16978425 YP_008563885.1 CDS LY180_03765 NC_022364.1 804220 805152 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 804220..805152 Escherichia coli LY180 16978426 YP_008563886.1 CDS LY180_03770 NC_022364.1 805142 805876 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LamB/YcsF family protein 805142..805876 Escherichia coli LY180 16978427 YP_008563887.1 CDS LY180_03775 NC_022364.1 805912 806703 D 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease SymE 805912..806703 Escherichia coli LY180 16978428 YP_008563888.1 CDS LY180_03780 NC_022364.1 806700 807746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AbrB family transcriptional regulator complement(806700..807746) Escherichia coli LY180 16978429 YP_008563889.1 CDS LY180_03785 NC_022364.1 807898 808959 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(807898..808959) Escherichia coli LY180 16978430 YP_008563890.1 CDS LY180_03790 NC_022364.1 808956 809687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(808956..809687) Escherichia coli LY180 16978431 YP_008563891.1 CDS LY180_03795 NC_022364.1 809702 812152 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(809702..812152) Escherichia coli LY180 16978432 YP_008563892.1 CDS LY180_03800 NC_022364.1 812212 812778 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(812212..812778) Escherichia coli LY180 16978433 YP_008563893.1 CDS gltA NC_022364.1 813169 814452 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; type II citrate synthase complement(813169..814452) Escherichia coli LY180 16978434 YP_008563894.1 CDS sdhC NC_022364.1 815146 815550 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 large membrane subunit 815146..815550 Escherichia coli LY180 16978435 YP_008563895.1 CDS sdhD NC_022364.1 815544 815891 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase cytochrome b556 small membrane subunit 815544..815891 Escherichia coli LY180 16978436 YP_008563896.1 CDS sdhA NC_022364.1 815891 817657 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase flavoprotein subunit 815891..817657 Escherichia coli LY180 16978437 YP_008563897.1 CDS sdhB NC_022364.1 817673 818389 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate dehydrogenase iron-sulfur subunit 817673..818389 Escherichia coli LY180 16978438 YP_008563898.1 CDS LY180_03830 NC_022364.1 818590 821391 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxoglutarate dehydrogenase E1 818590..821391 Escherichia coli LY180 16978439 YP_008563899.1 CDS LY180_03835 NC_022364.1 821406 822623 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrolipoamide succinyltransferase 821406..822623 Escherichia coli LY180 16978440 YP_008563900.1 CDS sucC NC_022364.1 822717 823883 D catalyzes the interconversion of succinyl-CoA and succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate--CoA ligase subunit beta 822717..823883 Escherichia coli LY180 16978441 YP_008563901.1 CDS LY180_03845 NC_022364.1 823883 824752 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-CoA synthetase subunit alpha 823883..824752 Escherichia coli LY180 16978442 YP_008563902.1 CDS LY180_03850 NC_022364.1 824856 825578 R regulates the succiny-lCoA synthetase operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(824856..825578) Escherichia coli LY180 16978443 YP_008563903.1 CDS LY180_03855 NC_022364.1 825747 827663 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 825747..827663 Escherichia coli LY180 16978444 YP_008563904.1 CDS LY180_03860 NC_022364.1 827681 830314 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-mannosidase 827681..830314 Escherichia coli LY180 16978445 YP_008563905.1 CDS LY180_03865 NC_022364.1 831161 832729 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 831161..832729 Escherichia coli LY180 16978446 YP_008563906.1 CDS LY180_03870 NC_022364.1 832745 833884 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 832745..833884 Escherichia coli LY180 16978447 YP_008563907.1 CDS LY180_03875 NC_022364.1 833899 834012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 833899..834012 Escherichia coli LY180 16978448 YP_008563908.1 CDS LY180_03880 NC_022364.1 834012 834305 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 834012..834305 Escherichia coli LY180 16978449 YP_008563909.1 CDS LY180_03885 NC_022364.1 834455 834859 D catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase 834455..834859 Escherichia coli LY180 16978450 YP_008563910.1 CDS LY180_03890 NC_022364.1 834856 835548 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 834856..835548 Escherichia coli LY180 16978451 YP_008563911.1 CDS LY180_03895 NC_022364.1 835552 835980 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin transporter 835552..835980 Escherichia coli LY180 16978452 YP_008563912.1 CDS tolA NC_022364.1 836045 837310 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell envelope integrity inner membrane protein TolA 836045..837310 Escherichia coli LY180 16978453 YP_008563913.1 CDS tolB NC_022364.1 837443 838735 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocation protein TolB 837443..838735 Escherichia coli LY180 16978454 YP_008563914.1 CDS LY180_03910 NC_022364.1 838770 839291 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-associated outer membrane lipoprotein 838770..839291 Escherichia coli LY180 16978455 YP_008563915.1 CDS LY180_03915 NC_022364.1 839301 840092 D periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tol-pal system protein YbgF 839301..840092 Escherichia coli LY180 16978456 YP_008563916.1 CDS LY180_03955 NC_022364.1 841661 842704 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinolinate synthetase 841661..842704 Escherichia coli LY180 16978464 YP_008563917.1 CDS LY180_03960 NC_022364.1 842742 843461 D involved in nicotinamide riboside transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamide riboside transporter PnuC 842742..843461 Escherichia coli LY180 16978465 YP_008563918.1 CDS LY180_03965 NC_022364.1 843458 844399 R involved in zinc efflux across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZitB complement(843458..844399) Escherichia coli LY180 16978466 YP_008563919.1 CDS LY180_03970 NC_022364.1 844513 844893 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(844513..844893) Escherichia coli LY180 16978467 YP_008563920.1 CDS LY180_03975 NC_022364.1 845209 846261 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 845209..846261 Escherichia coli LY180 16978468 YP_008563921.1 CDS gpmA NC_022364.1 846419 847171 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase complement(846419..847171) Escherichia coli LY180 16978469 YP_008563922.1 CDS galM NC_022364.1 847376 848416 R mutarotase; catalyzes the conversion of beta-galactose to the alpha-anomer; links the metabolism of lactose and galactose; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-epimerase complement(847376..848416) Escherichia coli LY180 16978470 YP_008563923.1 CDS LY180_03990 NC_022364.1 848410 849558 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactokinase complement(848410..849558) Escherichia coli LY180 16978471 YP_008563924.1 CDS LY180_03995 NC_022364.1 849562 850608 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactose-1-phosphate uridylyltransferase complement(849562..850608) Escherichia coli LY180 16978472 YP_008563925.1 CDS LY180_04000 NC_022364.1 850618 851634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-galactose-4-epimerase complement(850618..851634) Escherichia coli LY180 16978473 YP_008563926.1 CDS LY180_04005 NC_022364.1 851897 853369 R contains 2 ATP-binding cassettes; involved in the transport of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter ATP-binding protein complement(851897..853369) Escherichia coli LY180 16978474 YP_008563927.1 CDS LY180_04010 NC_022364.1 853437 854225 R represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(853437..854225) Escherichia coli LY180 16978475 YP_008563928.1 CDS LY180_04015 NC_022364.1 854354 854503 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 854354..854503 Escherichia coli LY180 16978476 YP_008563929.1 CDS modA NC_022364.1 854670 855443 D with ModCB is involved in the high-affinity transport of molybdate; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum ABC transporter substrate-binding protein 854670..855443 Escherichia coli LY180 16978477 YP_008563930.1 CDS modB NC_022364.1 855443 856132 D part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter permease 855443..856132 Escherichia coli LY180 16978478 YP_008563931.1 CDS modC NC_022364.1 856135 857193 D Part of the ABC transporter complex modABC involved in molybdenum import; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdate ABC transporter ATP-binding protein 856135..857193 Escherichia coli LY180 16978479 YP_008563932.1 CDS LY180_04035 NC_022364.1 857194 858012 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxal phosphate phosphatase complement(857194..858012) Escherichia coli LY180 16978480 YP_008563933.1 CDS LY180_04040 NC_022364.1 858167 859162 D catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase 858167..859162 Escherichia coli LY180 16978481 YP_008563934.1 CDS LY180_04045 NC_022364.1 859203 860156 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(859203..860156) Escherichia coli LY180 16978482 YP_008563935.1 CDS LY180_04050 NC_022364.1 860340 861392 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 860340..861392 Escherichia coli LY180 16978483 YP_008563936.1 CDS LY180_04055 NC_022364.1 861468 862901 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 861468..862901 Escherichia coli LY180 16978484 YP_008563937.1 CDS LY180_04060 NC_022364.1 863084 865345 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydratase 863084..865345 Escherichia coli LY180 16978485 YP_008563938.1 CDS LY180_04065 NC_022364.1 865579 866862 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase complement(865579..866862) Escherichia coli LY180 16978486 YP_008563939.1 CDS LY180_04070 NC_022364.1 867014 867490 R YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein complement(867014..867490) Escherichia coli LY180 16978487 YP_008563940.1 CDS LY180_04075 NC_022364.1 867549 868838 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylmethionine--8-amino-7-oxononanoate aminotransferase complement(867549..868838) Escherichia coli LY180 16978488 YP_008563941.1 CDS LY180_04080 NC_022364.1 868925 869965 D catalyzes the formation of biotin from dethiobiotin; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin synthase 868925..869965 Escherichia coli LY180 16978489 YP_008563942.1 CDS LY180_04085 NC_022364.1 869962 871116 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 8-amino-7-oxononanoate synthase 869962..871116 Escherichia coli LY180 16978490 YP_008563943.1 CDS LY180_04090 NC_022364.1 871103 871858 D methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin biosynthesis protein BioC 871103..871858 Escherichia coli LY180 16978491 YP_008563944.1 CDS bioD NC_022364.1 871851 872528 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase 871851..872528 Escherichia coli LY180 16978492 YP_008563945.1 CDS LY180_04100 NC_022364.1 873107 875128 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit B 873107..875128 Escherichia coli LY180 16978493 YP_008563946.1 CDS LY180_04105 NC_022364.1 875320 876228 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(875320..876228) Escherichia coli LY180 16978494 YP_008563947.1 CDS moaA NC_022364.1 876625 877614 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein A 876625..877614 Escherichia coli LY180 16978495 YP_008563948.1 CDS LY180_04115 NC_022364.1 877636 878148 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein B 877636..878148 Escherichia coli LY180 16978496 YP_008563949.1 CDS moaC NC_022364.1 878151 878636 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdenum cofactor biosynthesis protein MoaC 878151..878636 Escherichia coli LY180 16978497 YP_008563950.1 CDS moaD NC_022364.1 878629 878874 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin synthase small subunit 878629..878874 Escherichia coli LY180 16978498 YP_008563951.1 CDS moaE NC_022364.1 878876 879328 D catalyzes the conversion of molybdopterin precursor Z into molybdopterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin guanine dinucleotide biosynthesis protein MoaE 878876..879328 Escherichia coli LY180 16978499 YP_008563952.1 CDS LY180_04135 NC_022364.1 879465 880169 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 879465..880169 Escherichia coli LY180 16978500 YP_008563953.1 CDS LY180_04140 NC_022364.1 880374 881087 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 880374..881087 Escherichia coli LY180 16978501 YP_008563954.1 CDS LY180_04145 NC_022364.1 881123 882079 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(881123..882079) Escherichia coli LY180 16978502 YP_008563955.1 CDS LY180_04150 NC_022364.1 882079 883320 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthase 2 complement(882079..883320) Escherichia coli LY180 16978503 YP_008563956.1 CDS LY180_04155 NC_022364.1 883317 884078 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(883317..884078) Escherichia coli LY180 16978504 YP_008563957.1 CDS LY180_04160 NC_022364.1 884211 884621 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 884211..884621 Escherichia coli LY180 16978505 YP_008563958.1 CDS LY180_04165 NC_022364.1 884583 885689 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(884583..885689) Escherichia coli LY180 16978506 YP_008563959.1 CDS LY180_04170 NC_022364.1 885700 886833 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(885700..886833) Escherichia coli LY180 16978507 YP_008563960.1 CDS LY180_04175 NC_022364.1 886826 888562 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(886826..888562) Escherichia coli LY180 16978508 YP_008563961.1 CDS LY180_04180 NC_022364.1 888555 889553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(888555..889553) Escherichia coli LY180 16978509 YP_008563962.1 CDS LY180_04185 NC_022364.1 889553 890236 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(889553..890236) Escherichia coli LY180 16978510 YP_008563963.1 CDS LY180_04190 NC_022364.1 890453 891817 D this helicase is not essential cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 890453..891817 Escherichia coli LY180 16978511 YP_008563964.1 CDS LY180_04195 NC_022364.1 891824 891919 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 891824..891919 Escherichia coli LY180 16978512 YP_008563965.1 CDS LY180_04205 NC_022364.1 892049 892531 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Swarming motility protein ybiA complement(892049..892531) Escherichia coli LY180 16978514 YP_008563966.1 CDS dinG NC_022364.1 892543 894801 D helicase involved in DNA repair and perhaps also replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase DinG 892543..894801 Escherichia coli LY180 16978515 YP_008563967.1 CDS LY180_04215 NC_022364.1 894829 895791 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase 894829..895791 Escherichia coli LY180 16978516 YP_008563968.1 CDS LY180_04220 NC_022364.1 895932 897017 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase 895932..897017 Escherichia coli LY180 16978517 YP_008563969.1 CDS LY180_04225 NC_022364.1 897246 897506 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(897246..897506) Escherichia coli LY180 16978518 YP_008563970.1 CDS LY180_04230 NC_022364.1 897771 898037 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(897771..898037) Escherichia coli LY180 16978519 YP_008563971.1 CDS LY180_04235 NC_022364.1 898111 898788 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe(II)-dependent oxygenase complement(898111..898788) Escherichia coli LY180 16978520 YP_008563972.1 CDS LY180_04240 NC_022364.1 898830 901112 R Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor Fiu complement(898830..901112) Escherichia coli LY180 16978521 YP_008563973.1 CDS LY180_04245 NC_022364.1 901377 901637 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(901377..901637) Escherichia coli LY180 16978522 YP_008563974.1 CDS LY180_04250 NC_022364.1 901913 902839 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 901913..902839 Escherichia coli LY180 16978523 YP_008563975.1 CDS LY180_04255 NC_022364.1 902836 905061 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(902836..905061) Escherichia coli LY180 16978524 YP_008563976.1 CDS LY180_04260 NC_022364.1 905060 905161 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 905060..905161 Escherichia coli LY180 16978525 YP_008563977.1 CDS LY180_04265 NC_022364.1 905178 905900 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein complement(905178..905900) Escherichia coli LY180 16978526 YP_008563978.1 CDS glnP NC_022364.1 905897 906556 R similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter permease complement(905897..906556) Escherichia coli LY180 16978527 YP_008563979.1 CDS glnH NC_022364.1 906695 907441 R similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(906695..907441) Escherichia coli LY180 16978528 YP_008563980.1 CDS LY180_04280 NC_022364.1 907845 908348 R binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA starvation/stationary phase protection protein Dps complement(907845..908348) Escherichia coli LY180 16978529 YP_008563981.1 CDS LY180_04285 NC_022364.1 908647 909534 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(908647..909534) Escherichia coli LY180 16978530 YP_008563982.1 CDS ompX NC_022364.1 909887 910402 D OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein X 909887..910402 Escherichia coli LY180 16978531 YP_008563983.1 CDS LY180_04295 NC_022364.1 910451 912034 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase complement(910451..912034) Escherichia coli LY180 16978532 YP_008563984.1 CDS LY180_04300 NC_022364.1 912306 912413 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(912306..912413) Escherichia coli LY180 16978533 YP_008563985.1 CDS LY180_04305 NC_022364.1 912620 913087 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 912620..913087 Escherichia coli LY180 16978534 YP_008563986.1 CDS LY180_04310 NC_022364.1 913084 914202 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 913084..914202 Escherichia coli LY180 16978535 YP_008563987.1 CDS LY180_04315 NC_022364.1 914261 915181 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(914261..915181) Escherichia coli LY180 16978536 YP_008563988.1 CDS LY180_04320 NC_022364.1 915400 916992 D Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein 915400..916992 Escherichia coli LY180 16978537 YP_008563989.1 CDS LY180_04325 NC_022364.1 917271 918251 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 917271..918251 Escherichia coli LY180 16978538 YP_008563990.1 CDS LY180_04330 NC_022364.1 918507 919772 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(918507..919772) Escherichia coli LY180 16978539 YP_008563991.1 CDS LY180_04335 NC_022364.1 919924 920739 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase complement(919924..920739) Escherichia coli LY180 16978540 YP_008563992.1 CDS LY180_04340 NC_022364.1 920885 923317 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase complement(920885..923317) Escherichia coli LY180 16978541 YP_008563993.1 CDS LY180_04345 NC_022364.1 923323 924222 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate-lyase 3-activating protein complement(923323..924222) Escherichia coli LY180 16978542 YP_008563994.1 CDS LY180_04350 NC_022364.1 924353 925015 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase 924353..925015 Escherichia coli LY180 16978543 YP_008563995.1 CDS LY180_04355 NC_022364.1 925091 925840 R Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-synthase adenylyltransferase complement(925091..925840) Escherichia coli LY180 16978544 YP_008563996.1 CDS LY180_04360 NC_022364.1 925840 927075 R is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeA complement(925840..927075) Escherichia coli LY180 16978545 YP_008563997.1 CDS LY180_04365 NC_022364.1 927279 928244 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl peptidase 927279..928244 Escherichia coli LY180 16978546 YP_008563998.1 CDS LY180_04370 NC_022364.1 928231 930102 D with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 928231..930102 Escherichia coli LY180 16978547 YP_008563999.1 CDS LY180_04375 NC_022364.1 930122 931660 D with GsiACD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter substrate-binding protein GsiB 930122..931660 Escherichia coli LY180 16978548 YP_008564000.1 CDS LY180_04380 NC_022364.1 931678 932598 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease 931678..932598 Escherichia coli LY180 16978549 YP_008564001.1 CDS LY180_04385 NC_022364.1 932601 933512 D with GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter permease GsiD 932601..933512 Escherichia coli LY180 16978550 YP_008564002.1 CDS LY180_04390 NC_022364.1 933612 936038 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 933612..936038 Escherichia coli LY180 16978551 YP_008564003.1 CDS LY180_04395 NC_022364.1 936046 937374 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 936046..937374 Escherichia coli LY180 16978552 YP_008564004.1 CDS rimO NC_022364.1 937421 938746 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S12 methylthiotransferase complement(937421..938746) Escherichia coli LY180 16978553 YP_008564005.1 CDS bssR NC_022364.1 938959 939342 D BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssR 938959..939342 Escherichia coli LY180 16978554 YP_008564006.1 CDS LY180_04410 NC_022364.1 939453 940568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose dehydrogenase 939453..940568 Escherichia coli LY180 16978555 YP_008564007.1 CDS LY180_04415 NC_022364.1 940565 941191 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(940565..941191) Escherichia coli LY180 16978556 YP_008564008.1 CDS LY180_04420 NC_022364.1 941429 942640 D penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 941429..942640 Escherichia coli LY180 16978557 YP_008564009.1 CDS LY180_04425 NC_022364.1 942687 943445 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(942687..943445) Escherichia coli LY180 16978558 YP_008564010.1 CDS LY180_04430 NC_022364.1 943503 944099 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase complement(943503..944099) Escherichia coli LY180 16978559 YP_008564011.1 CDS LY180_04435 NC_022364.1 944384 945616 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 944384..945616 Escherichia coli LY180 16978560 YP_008564012.1 CDS LY180_04440 NC_022364.1 945657 945941 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(945657..945941) Escherichia coli LY180 16978561 YP_008564013.1 CDS LY180_04445 NC_022364.1 946027 946842 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphatase SupH complement(946027..946842) Escherichia coli LY180 16978562 YP_008564014.1 CDS LY180_04450 NC_022364.1 946842 948050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(946842..948050) Escherichia coli LY180 16978563 YP_008564015.1 CDS LY180_04455 NC_022364.1 948134 948670 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 948134..948670 Escherichia coli LY180 16978564 YP_008564016.1 CDS LY180_04460 NC_022364.1 948845 950530 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(948845..950530) Escherichia coli LY180 16978565 YP_008564017.1 CDS LY180_04465 NC_022364.1 950800 951177 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 950800..951177 Escherichia coli LY180 16978566 YP_008564018.1 CDS LY180_04470 NC_022364.1 951207 951464 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(951207..951464) Escherichia coli LY180 16978567 YP_008564019.1 CDS LY180_04475 NC_022364.1 951624 951911 D YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 951624..951911 Escherichia coli LY180 16978568 YP_008564020.1 CDS LY180_04480 NC_022364.1 951895 952617 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitroreductase A 951895..952617 Escherichia coli LY180 16978569 YP_008564021.1 CDS LY180_04485 NC_022364.1 952678 953580 D responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein S6 modification protein 952678..953580 Escherichia coli LY180 16978570 YP_008564022.1 CDS LY180_04490 NC_022364.1 953668 954144 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 953668..954144 Escherichia coli LY180 16978571 YP_008564023.1 CDS LY180_04495 NC_022364.1 954495 955607 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein 954495..955607 Escherichia coli LY180 16978572 YP_008564024.1 CDS potA NC_022364.1 955702 956835 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase 955702..956835 Escherichia coli LY180 16978573 YP_008564025.1 CDS LY180_04505 NC_022364.1 956845 957798 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 956845..957798 Escherichia coli LY180 16978574 YP_008564026.1 CDS LY180_04510 NC_022364.1 957795 958640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease 957795..958640 Escherichia coli LY180 16978575 YP_008564027.1 CDS LY180_04515 NC_022364.1 958700 959188 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 958700..959188 Escherichia coli LY180 16978576 YP_008564028.1 CDS rumB NC_022364.1 959229 960356 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 959229..960356 Escherichia coli LY180 16978577 YP_008564029.1 CDS LY180_04525 NC_022364.1 960531 961262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(960531..961262) Escherichia coli LY180 16982301 YP_008564030.1 CDS artM NC_022364.1 961554 962222 R with ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtM complement(961554..962222) Escherichia coli LY180 16978579 YP_008564031.1 CDS LY180_04535 NC_022364.1 962222 962938 R with ArtPMJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine transporter permease subunit ArtQ complement(962222..962938) Escherichia coli LY180 16978580 YP_008564032.1 CDS LY180_04540 NC_022364.1 962945 963676 R with ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter substrate-binding protein complement(962945..963676) Escherichia coli LY180 16978581 YP_008564033.1 CDS LY180_04545 NC_022364.1 963694 964422 R Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine ABC transporter ATP-binding protein complement(963694..964422) Escherichia coli LY180 16978582 YP_008564034.1 CDS LY180_04550 NC_022364.1 964640 965155 R induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(964640..965155) Escherichia coli LY180 16978583 YP_008564035.1 CDS LY180_04555 NC_022364.1 965281 965604 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 965281..965604 Escherichia coli LY180 16978584 YP_008564036.1 CDS LY180_04560 NC_022364.1 965601 966431 D catalyzes the cleavage of the bond between muamic acid and l-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 965601..966431 Escherichia coli LY180 16978585 YP_008564037.1 CDS LY180_04565 NC_022364.1 966428 967477 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(966428..967477) Escherichia coli LY180 16978586 YP_008564038.1 CDS LY180_04570 NC_022364.1 967540 968970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(967540..968970) Escherichia coli LY180 16978587 YP_008564039.1 CDS LY180_04575 NC_022364.1 968981 969982 R low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine aldolase complement(968981..969982) Escherichia coli LY180 16978588 YP_008564040.1 CDS LY180_04580 NC_022364.1 970019 971737 R catalyzes the formation of acetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate dehydrogenase complement(970019..971737) Escherichia coli LY180 16978589 YP_008564041.1 CDS LY180_04585 NC_022364.1 971870 972838 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(971870..972838) Escherichia coli LY180 16978590 YP_008564042.1 CDS LY180_04590 NC_022364.1 972850 974502 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxylamine reductase complement(972850..974502) Escherichia coli LY180 16978591 YP_008564043.1 CDS LY180_04595 NC_022364.1 974646 975545 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(974646..975545) Escherichia coli LY180 16978592 YP_008564044.1 CDS LY180_04600 NC_022364.1 975954 976043 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 975954..976043 Escherichia coli LY180 16978593 YP_008564045.1 CDS LY180_04605 NC_022364.1 976040 976735 R porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; Derived by automated computational analysis using gene prediction method: Protein Homology.; aquaporin Z complement(976040..976735) Escherichia coli LY180 16978594 YP_008564046.1 CDS LY180_04610 NC_022364.1 977161 978819 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 977161..978819 Escherichia coli LY180 16978595 YP_008564047.1 CDS LY180_04615 NC_022364.1 978816 979808 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(978816..979808) Escherichia coli LY180 16978596 YP_008564048.1 CDS LY180_04620 NC_022364.1 979923 981038 D confers macrolide resistance via active drug efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide transporter subunit MacA 979923..981038 Escherichia coli LY180 16978597 YP_008564049.1 CDS LY180_04625 NC_022364.1 981035 982981 D with MacA is involved in the export of macrolide; Derived by automated computational analysis using gene prediction method: Protein Homology.; macrolide ABC transporter ATP-binding protein 981035..982981 Escherichia coli LY180 16978598 YP_008564050.1 CDS LY180_04630 NC_022364.1 983054 983278 R inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(983054..983278) Escherichia coli LY180 16978599 YP_008564051.1 CDS clpS NC_022364.1 983601 983921 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease adaptor protein ClpS 983601..983921 Escherichia coli LY180 16978600 YP_008564052.1 CDS clpA NC_022364.1 983952 986228 D ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent Clp protease ATP-binding protein 983952..986228 Escherichia coli LY180 16978601 YP_008564053.1 CDS LY180_04650 NC_022364.1 986913 987131 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-1 complement(986913..987131) Escherichia coli LY180 16978603 YP_008564054.1 CDS aat NC_022364.1 987416 988120 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucyl/phenylalanyl-tRNA--protein transferase complement(987416..988120) Escherichia coli LY180 16978604 YP_008564055.1 CDS LY180_04660 NC_022364.1 988162 989883 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(988162..989883) Escherichia coli LY180 16978605 YP_008564056.1 CDS LY180_04665 NC_022364.1 989884 991650 R in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein complement(989884..991650) Escherichia coli LY180 16978606 YP_008564057.1 CDS LY180_04670 NC_022364.1 991773 992738 R catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin reductase complement(991773..992738) Escherichia coli LY180 16978607 YP_008564058.1 CDS LY180_04675 NC_022364.1 993283 993777 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; AsnC family transcriptional regulator 993283..993777 Escherichia coli LY180 16978608 YP_008564059.1 CDS LY180_04680 NC_022364.1 993912 997979 D DNA-binding membrane protein required for chromosome resolution and partitioning; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsK 993912..997979 Escherichia coli LY180 16978609 YP_008564060.1 CDS lolA NC_022364.1 998134 998745 D participates with LolB in the incorporation of lipoprotein into the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein chaperone 998134..998745 Escherichia coli LY180 16978610 YP_008564061.1 CDS LY180_04690 NC_022364.1 998756 1000099 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RarA 998756..1000099 Escherichia coli LY180 16978611 YP_008564062.1 CDS LY180_04695 NC_022364.1 1000190 1001482 D Derived by automated computational analysis using gene prediction method: Protein Homology.; seryl-tRNA synthetase 1000190..1001482 Escherichia coli LY180 16978612 YP_008564063.1 CDS LY180_04700 NC_022364.1 1001721 1004165 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1001721..1004165 Escherichia coli LY180 16978613 YP_008564064.1 CDS LY180_04705 NC_022364.1 1004176 1004793 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1004176..1004793 Escherichia coli LY180 16978614 YP_008564065.1 CDS LY180_04710 NC_022364.1 1004795 1005658 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit C 1004795..1005658 Escherichia coli LY180 16978615 YP_008564066.1 CDS LY180_04715 NC_022364.1 1005693 1006319 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1005693..1006319) Escherichia coli LY180 16978616 YP_008564067.1 CDS LY180_04720 NC_022364.1 1006633 1007781 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 1006633..1007781 Escherichia coli LY180 16978617 YP_008564068.1 CDS LY180_04725 NC_022364.1 1007991 1009421 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1007991..1009421 Escherichia coli LY180 16978618 YP_008564069.1 CDS LY180_04730 NC_022364.1 1009422 1010330 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(1009422..1010330) Escherichia coli LY180 16978619 YP_008564070.1 CDS LY180_04735 NC_022364.1 1010430 1011020 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1010430..1011020 Escherichia coli LY180 16978620 YP_008564071.1 CDS pflA NC_022364.1 1011402 1012142 R activates pyruvate formate-lyase 1 under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase-activating protein complement(1011402..1012142) Escherichia coli LY180 16978621 YP_008564072.1 CDS LY180_04745 NC_022364.1 1012334 1014616 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(1012334..1014616) Escherichia coli LY180 16978622 YP_008564073.1 CDS LY180_04750 NC_022364.1 1014671 1015528 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate transporter complement(1014671..1015528) Escherichia coli LY180 16978623 YP_008564074.1 CDS LY180_04755 NC_022364.1 1015933 1017693 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1015933..1017693) Escherichia coli LY180 16978624 YP_008564075.1 CDS LY180_04760 NC_022364.1 1017823 1018515 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1017823..1018515 Escherichia coli LY180 16978625 YP_008564076.1 CDS LY180_04765 NC_022364.1 1018714 1019802 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoserine/phosphohydroxythreonine aminotransferase 1018714..1019802 Escherichia coli LY180 16978626 YP_008564077.1 CDS LY180_04770 NC_022364.1 1019873 1021156 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoshikimate 1-carboxyvinyltransferase 1019873..1021156 Escherichia coli LY180 16978627 YP_008564078.1 CDS LY180_04775 NC_022364.1 1021325 1022089 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 1021325..1022089 Escherichia coli LY180 16978628 YP_008564079.1 CDS cmk NC_022364.1 1022262 1022945 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidylate kinase 1022262..1022945 Escherichia coli LY180 16978629 YP_008564080.1 CDS rpsA NC_022364.1 1023056 1024729 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S1 1023056..1024729 Escherichia coli LY180 16978630 YP_008564081.1 CDS ihfB NC_022364.1 1024889 1025173 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit beta 1024889..1025173 Escherichia coli LY180 16978631 YP_008564082.1 CDS LY180_04795 NC_022364.1 1025381 1027645 D Derived by automated computational analysis using gene prediction method: Protein Homology.; competence protein ComEC 1025381..1027645 Escherichia coli LY180 16978632 YP_008564083.1 CDS LY180_04800 NC_022364.1 1027682 1029430 D involved in the transport of lipid A across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 1027682..1029430 Escherichia coli LY180 16978633 YP_008564084.1 CDS lpxK NC_022364.1 1029427 1030413 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tetraacyldisaccharide 4'-kinase 1029427..1030413 Escherichia coli LY180 16978634 YP_008564085.1 CDS LY180_04810 NC_022364.1 1030450 1031682 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1030450..1031682 Escherichia coli LY180 16978635 YP_008564086.1 CDS LY180_04815 NC_022364.1 1031734 1031916 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1031734..1031916 Escherichia coli LY180 16978636 YP_008564087.1 CDS LY180_04820 NC_022364.1 1031913 1032659 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-manno-octulosonate cytidylyltransferase 1031913..1032659 Escherichia coli LY180 16978637 YP_008564088.1 CDS LY180_04825 NC_022364.1 1032813 1033706 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1032813..1033706 Escherichia coli LY180 16978638 YP_008564089.1 CDS LY180_04830 NC_022364.1 1033683 1034462 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1033683..1034462) Escherichia coli LY180 16978639 YP_008564090.1 CDS LY180_04835 NC_022364.1 1034598 1035383 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosyl-L-methionine-dependent methyltransferase 1034598..1035383 Escherichia coli LY180 16978640 YP_008564091.1 CDS LY180_04840 NC_022364.1 1035380 1036702 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit F 1035380..1036702 Escherichia coli LY180 16978641 YP_008564092.1 CDS LY180_04845 NC_022364.1 1036683 1037387 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; condesin subunit E 1036683..1037387 Escherichia coli LY180 16978642 YP_008564093.1 CDS mukB NC_022364.1 1037387 1041847 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein MukB 1037387..1041847 Escherichia coli LY180 16978643 YP_008564094.1 CDS LY180_04855 NC_022364.1 1042108 1043955 D catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase 1042108..1043955 Escherichia coli LY180 16978644 YP_008564095.1 CDS LY180_04860 NC_022364.1 1044127 1044684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1044127..1044684 Escherichia coli LY180 16978645 YP_008564096.1 CDS LY180_04865 NC_022364.1 1044711 1045358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1044711..1045358 Escherichia coli LY180 16978646 YP_008564097.1 CDS LY180_04875 NC_022364.1 1045580 1046770 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase complement(1045580..1046770) Escherichia coli LY180 16978648 YP_008564098.1 CDS LY180_04880 NC_022364.1 1046769 1046939 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1046769..1046939 Escherichia coli LY180 16978649 YP_008564099.1 CDS LY180_04890 NC_022364.1 1048650 1050050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; asparaginyl-tRNA synthetase complement(1048650..1050050) Escherichia coli LY180 16978651 YP_008564100.1 CDS LY180_04895 NC_022364.1 1050219 1051421 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate phosphoribosyltransferase complement(1050219..1051421) Escherichia coli LY180 16978652 YP_008564101.1 CDS pepN NC_022364.1 1051687 1054299 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase N 1051687..1054299 Escherichia coli LY180 16978653 YP_008564102.1 CDS potA NC_022364.1 1054506 1055273 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase complement(1054506..1055273) Escherichia coli LY180 16978654 YP_008564103.1 CDS ssuC NC_022364.1 1055270 1056061 R part of the ABC type transport system for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfonate ABC transporter complement(1055270..1056061) Escherichia coli LY180 16978655 YP_008564104.1 CDS LY180_04915 NC_022364.1 1056072 1057217 R catalyzes the release of sulfite from alkanesulfonates; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkanesulfonate monooxygenase complement(1056072..1057217) Escherichia coli LY180 16978656 YP_008564105.1 CDS LY180_04920 NC_022364.1 1057214 1058173 R part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfonate ABC transporter substrate-binding protein complement(1057214..1058173) Escherichia coli LY180 16978657 YP_008564106.1 CDS LY180_04925 NC_022364.1 1058166 1058741 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent FMN reductase complement(1058166..1058741) Escherichia coli LY180 16978658 YP_008564107.1 CDS LY180_04930 NC_022364.1 1059097 1059639 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 1059097..1059639 Escherichia coli LY180 16978659 YP_008564108.1 CDS LY180_04935 NC_022364.1 1059722 1060423 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 1059722..1060423 Escherichia coli LY180 16978660 YP_008564109.1 CDS LY180_04940 NC_022364.1 1060493 1063048 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD 1060493..1063048 Escherichia coli LY180 16978661 YP_008564110.1 CDS LY180_04945 NC_022364.1 1063039 1064109 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 1063039..1064109 Escherichia coli LY180 16978662 YP_008564111.1 CDS LY180_04950 NC_022364.1 1064121 1064663 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 1064121..1064663 Escherichia coli LY180 16978663 YP_008564112.1 CDS LY180_04955 NC_022364.1 1064671 1065186 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 1064671..1065186 Escherichia coli LY180 16978664 YP_008564113.1 CDS LY180_04960 NC_022364.1 1065200 1065889 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial chaperone BcfG 1065200..1065889 Escherichia coli LY180 16978665 YP_008564114.1 CDS LY180_04965 NC_022364.1 1066000 1067010 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotate dehydrogenase 1066000..1067010 Escherichia coli LY180 16978666 YP_008564115.1 CDS LY180_04970 NC_022364.1 1067184 1067726 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZapC 1067184..1067726 Escherichia coli LY180 16978667 YP_008564116.1 CDS LY180_04975 NC_022364.1 1067723 1068832 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1067723..1068832) Escherichia coli LY180 16978668 YP_008564117.1 CDS rlmL NC_022364.1 1069076 1071184 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase 1069076..1071184 Escherichia coli LY180 16978669 YP_008564118.1 CDS LY180_04985 NC_022364.1 1071195 1073102 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATPase 1071195..1073102 Escherichia coli LY180 16978670 YP_008564119.1 CDS LY180_04990 NC_022364.1 1073232 1074485 D Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein A 1073232..1074485 Escherichia coli LY180 16978671 YP_008564120.1 CDS LY180_04995 NC_022364.1 1074490 1076130 D Derived by automated computational analysis using gene prediction method: Protein Homology.; paraquat-inducible protein B 1074490..1076130 Escherichia coli LY180 16978672 YP_008564121.1 CDS LY180_05000 NC_022364.1 1076127 1076690 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1076127..1076690 Escherichia coli LY180 16978673 YP_008564122.1 CDS LY180_05005 NC_022364.1 1076946 1077113 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome modulation factor 1076946..1077113 Escherichia coli LY180 16978674 YP_008564123.1 CDS LY180_05010 NC_022364.1 1077183 1077809 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxydecanoyl-ACP dehydratase complement(1077183..1077809) Escherichia coli LY180 16978675 YP_008564124.1 CDS LY180_05015 NC_022364.1 1077770 1079530 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Lon protease complement(1077770..1079530) Escherichia coli LY180 16978676 YP_008564125.1 CDS LY180_05020 NC_022364.1 1079716 1080168 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Ter macrodomain organizer matS-binding protein 1079716..1080168 Escherichia coli LY180 16978677 YP_008564126.1 CDS LY180_05025 NC_022364.1 1080244 1081284 R OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1080244..1081284) Escherichia coli LY180 16978678 YP_008564127.1 CDS LY180_05030 NC_022364.1 1081641 1082150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SOS cell division inhibitor complement(1081641..1082150) Escherichia coli LY180 16978679 YP_008564128.1 CDS LY180_05035 NC_022364.1 1082369 1082998 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 1082369..1082998 Escherichia coli LY180 16978680 YP_008564129.1 CDS LY180_05040 NC_022364.1 1082961 1085123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1082961..1085123) Escherichia coli LY180 16978681 YP_008564130.1 CDS LY180_05045 NC_022364.1 1085133 1085579 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1085133..1085579) Escherichia coli LY180 16978682 YP_008564131.1 CDS helD NC_022364.1 1085702 1087756 D catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase IV 1085702..1087756 Escherichia coli LY180 16978683 YP_008564132.1 CDS LY180_05060 NC_022364.1 1088378 1089040 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1088378..1089040) Escherichia coli LY180 16978685 YP_008564133.1 CDS LY180_05065 NC_022364.1 1089213 1089626 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1089213..1089626 Escherichia coli LY180 16978686 YP_008564134.1 CDS LY180_05070 NC_022364.1 1089671 1089988 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HspQ complement(1089671..1089988) Escherichia coli LY180 16978687 YP_008564135.1 CDS LY180_05075 NC_022364.1 1090046 1091236 R SAM-dependent;catalyzes the methylation of cytosine at position 1962 of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1090046..1091236) Escherichia coli LY180 16978688 YP_008564136.1 CDS LY180_05080 NC_022364.1 1091331 1091609 D catalyzes the hydrolysis of acylphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acylphosphatase 1091331..1091609 Escherichia coli LY180 16978689 YP_008564137.1 CDS LY180_05085 NC_022364.1 1091606 1091935 R transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer protein TusE complement(1091606..1091935) Escherichia coli LY180 16978690 YP_008564138.1 CDS LY180_05090 NC_022364.1 1092026 1092685 R binds to the HflBKC complex which modulates FtsH activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; HflBKC-binding inner membrane protein complement(1092026..1092685) Escherichia coli LY180 16978691 YP_008564139.1 CDS LY180_05100 NC_022364.1 1093406 1094524 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1093406..1094524 Escherichia coli LY180 16978693 YP_008564140.1 CDS LY180_05105 NC_022364.1 1094521 1096314 D involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit 1094521..1096314 Escherichia coli LY180 16978694 YP_008564141.1 CDS LY180_05110 NC_022364.1 1096333 1097040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 b-type cytochrome subunit 1096333..1097040 Escherichia coli LY180 16978695 YP_008564142.1 CDS LY180_05115 NC_022364.1 1097037 1097624 D HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 1 maturation protease 1097037..1097624 Escherichia coli LY180 16978696 YP_008564143.1 CDS LY180_05120 NC_022364.1 1097621 1098019 D involved in processing hydrogenase proteins HyaA and HyaB; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaE 1097621..1098019 Escherichia coli LY180 16978697 YP_008564144.1 CDS LY180_05125 NC_022364.1 1098016 1098873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-1 operon protein HyaF 1098016..1098873 Escherichia coli LY180 16978698 YP_008564145.1 CDS LY180_05130 NC_022364.1 1099007 1100551 D part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit I 1099007..1100551 Escherichia coli LY180 16978699 YP_008564146.1 CDS LY180_05135 NC_022364.1 1100563 1101699 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome BD oxidase subunit II 1100563..1101699 Escherichia coli LY180 16978700 YP_008564147.1 CDS LY180_05140 NC_022364.1 1101854 1103182 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoanhydride phosphorylase 1101854..1103182 Escherichia coli LY180 16978701 YP_008564148.1 CDS LY180_05145 NC_022364.1 1103297 1105477 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein tyrosine kinase complement(1103297..1105477) Escherichia coli LY180 16978702 YP_008564149.1 CDS LY180_05150 NC_022364.1 1105497 1105943 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-tyrosine phosphatase complement(1105497..1105943) Escherichia coli LY180 16978703 YP_008564150.1 CDS LY180_05155 NC_022364.1 1105931 1107070 R required for the translocation of capsular polysaccharide through the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide export protein Wza complement(1105931..1107070) Escherichia coli LY180 16978704 YP_008564151.1 CDS LY180_05160 NC_022364.1 1107116 1109212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1107116..1109212) Escherichia coli LY180 16978705 YP_008564152.1 CDS LY180_05165 NC_022364.1 1109212 1109958 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1109212..1109958) Escherichia coli LY180 16978706 YP_008564153.1 CDS LY180_05170 NC_022364.1 1109955 1110533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1109955..1110533) Escherichia coli LY180 16978707 YP_008564154.1 CDS LY180_05175 NC_022364.1 1110706 1111011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1110706..1111011) Escherichia coli LY180 16978708 YP_008564155.1 CDS LY180_05180 NC_022364.1 1111454 1111666 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(1111454..1111666) Escherichia coli LY180 16978709 YP_008564156.1 CDS LY180_05185 NC_022364.1 1111952 1112164 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 1111952..1112164 Escherichia coli LY180 16978710 YP_008564157.1 CDS LY180_05190 NC_022364.1 1112338 1112568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 1112338..1112568 Escherichia coli LY180 16978711 YP_008564158.1 CDS LY180_05195 NC_022364.1 1112558 1112731 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gns 1112558..1112731 Escherichia coli LY180 16978712 YP_008564159.1 CDS LY180_05200 NC_022364.1 1112779 1113852 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter YccM complement(1112779..1113852) Escherichia coli LY180 16978713 YP_008564160.1 CDS LY180_05205 NC_022364.1 1113924 1116668 R Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(1113924..1116668) Escherichia coli LY180 16978714 YP_008564161.1 CDS LY180_05210 NC_022364.1 1116751 1117779 D periplasmic sensory protein associated with the TorRS two-component regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO reductase 1116751..1117779 Escherichia coli LY180 16978715 YP_008564162.1 CDS LY180_05215 NC_022364.1 1117752 1118444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(1117752..1118444) Escherichia coli LY180 16978716 YP_008564163.1 CDS LY180_05220 NC_022364.1 1118574 1119746 D with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase cytochrome C subunit 1118574..1119746 Escherichia coli LY180 16978717 YP_008564164.1 CDS LY180_05225 NC_022364.1 1119746 1122292 D catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; trimethylamine N-oxide reductase I catalytic subunit 1119746..1122292 Escherichia coli LY180 16978718 YP_008564165.1 CDS torD NC_022364.1 1122289 1122888 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein TorD 1122289..1122888 Escherichia coli LY180 16978719 YP_008564166.1 CDS LY180_05235 NC_022364.1 1122981 1123286 R with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone-modulator protein CbpM complement(1122981..1123286) Escherichia coli LY180 16978720 YP_008564167.1 CDS LY180_05240 NC_022364.1 1123286 1124206 R functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1123286..1124206) Escherichia coli LY180 16978721 YP_008564168.1 CDS LY180_05250 NC_022364.1 1126016 1127257 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphatase/inositol phosphatase 1126016..1127257 Escherichia coli LY180 16978723 YP_008564169.1 CDS LY180_05255 NC_022364.1 1127295 1127522 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1127295..1127522) Escherichia coli LY180 16978724 YP_008564170.1 CDS LY180_05260 NC_022364.1 1127543 1128139 R catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H:quinone oxidoreductase complement(1127543..1128139) Escherichia coli LY180 16978725 YP_008564171.1 CDS LY180_05265 NC_022364.1 1128512 1128685 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1128512..1128685 Escherichia coli LY180 16978726 YP_008564172.1 CDS LY180_05270 NC_022364.1 1128768 1130096 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine permease complement(1128768..1130096) Escherichia coli LY180 16978727 YP_008564173.1 CDS LY180_05275 NC_022364.1 1130117 1130611 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase complement(1130117..1130611) Escherichia coli LY180 16978728 YP_008564174.1 CDS LY180_05280 NC_022364.1 1130622 1131212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase complement(1130622..1131212) Escherichia coli LY180 16978729 YP_008564175.1 CDS LY180_05285 NC_022364.1 1131222 1132022 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacrylate hydrolase complement(1131222..1132022) Escherichia coli LY180 16978730 YP_008564176.1 CDS LY180_05290 NC_022364.1 1132030 1132416 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoacrylate peracid reductase complement(1132030..1132416) Escherichia coli LY180 16978731 YP_008564177.1 CDS LY180_05295 NC_022364.1 1132428 1133123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amidohydrolase complement(1132428..1133123) Escherichia coli LY180 16978732 YP_008564178.1 CDS LY180_05300 NC_022364.1 1133120 1134214 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine monooxygenase complement(1133120..1134214) Escherichia coli LY180 16978733 YP_008564179.1 CDS LY180_05305 NC_022364.1 1134499 1135137 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1134499..1135137 Escherichia coli LY180 16978734 YP_008564180.1 CDS putA NC_022364.1 1135177 1139139 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1135177..1139139) Escherichia coli LY180 16978735 YP_008564181.1 CDS LY180_05315 NC_022364.1 1139194 1139403 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1139194..1139403 Escherichia coli LY180 16978736 YP_008564182.1 CDS LY180_05320 NC_022364.1 1139562 1141070 D involved in the sodium dependent uptake of proline; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline:sodium symporter 1139562..1141070 Escherichia coli LY180 16978737 YP_008564183.1 CDS LY180_05325 NC_022364.1 1141736 1142566 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron permease 1141736..1142566 Escherichia coli LY180 16978738 YP_008564184.1 CDS LY180_05330 NC_022364.1 1142624 1143751 D with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron ABC transporter substrate-binding protein 1142624..1143751 Escherichia coli LY180 16978739 YP_008564185.1 CDS LY180_05335 NC_022364.1 1143757 1145028 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxidase 1143757..1145028 Escherichia coli LY180 16978740 YP_008564186.1 CDS LY180_05340 NC_022364.1 1145291 1146355 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate starvation protein PhoH 1145291..1146355 Escherichia coli LY180 16978741 YP_008564187.1 CDS pgaD NC_022364.1 1146405 1146818 R in Yersinia this gene is involved in biofilm formation and hemin adsorption; in Escherichia coli it is involved in PGA biosynthesis and export; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease complement(1146405..1146818) Escherichia coli LY180 16978742 YP_008564188.1 CDS LY180_05350 NC_022364.1 1146820 1148145 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-glycosyltransferase complement(1146820..1148145) Escherichia coli LY180 16978743 YP_008564189.1 CDS pgaB NC_022364.1 1148138 1150156 R in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane N-deacetylase complement(1148138..1150156) Escherichia coli LY180 16978744 YP_008564190.1 CDS pgaA NC_022364.1 1150165 1152588 R outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; poly-beta-1,6-N-acetyl-D-glucosamine export protein complement(1150165..1152588) Escherichia coli LY180 16978745 YP_008564191.1 CDS LY180_05365 NC_022364.1 1153423 1154631 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1153423..1154631) Escherichia coli LY180 16978746 YP_008564192.1 CDS LY180_05370 NC_022364.1 1154704 1155339 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 1154704..1155339 Escherichia coli LY180 16978747 YP_008564193.1 CDS LY180_05375 NC_022364.1 1155363 1155917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone 1155363..1155917 Escherichia coli LY180 16978748 YP_008564194.1 CDS LY180_05380 NC_022364.1 1155989 1156510 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1155989..1156510 Escherichia coli LY180 16978749 YP_008564195.1 CDS LY180_05385 NC_022364.1 1156574 1157407 R involved in the stability of the curlin proteins during assembly; involved in the secretion of the major curlin subunit CsgA across the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1156574..1157407) Escherichia coli LY180 16978750 YP_008564196.1 CDS LY180_05390 NC_022364.1 1157434 1157850 R nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgF complement(1157434..1157850) Escherichia coli LY180 16978751 YP_008564197.1 CDS LY180_05395 NC_022364.1 1157875 1158264 R chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgE complement(1157875..1158264) Escherichia coli LY180 16978752 YP_008564198.1 CDS LY180_05400 NC_022364.1 1158269 1158919 R activates the csgBA and csgDEFG operons involved in biofilm formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1158269..1158919) Escherichia coli LY180 16978753 YP_008564199.1 CDS csgB NC_022364.1 1159673 1160128 D CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; Derived by automated computational analysis using gene prediction method: Protein Homology.; curlin 1159673..1160128 Escherichia coli LY180 16978754 YP_008564200.1 CDS csgA NC_022364.1 1160169 1160624 D the major structural subunit of curlin which assemble to form curli which can bind to fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.; major curlin subunit 1160169..1160624 Escherichia coli LY180 16978755 YP_008564201.1 CDS csgC NC_022364.1 1160683 1161015 D involved in autoagglutination of curliated cells; not involved in production of curli fibers; Derived by automated computational analysis using gene prediction method: Protein Homology.; curli assembly protein CsgC 1160683..1161015 Escherichia coli LY180 16978756 YP_008564202.1 CDS LY180_05420 NC_022364.1 1161136 1161447 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1161136..1161447 Escherichia coli LY180 16978757 YP_008564203.1 CDS LY180_05425 NC_022364.1 1161542 1162075 D interacts and inactivates RNase III during cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase III inhibitor 1161542..1162075 Escherichia coli LY180 16978758 YP_008564204.1 CDS LY180_05430 NC_022364.1 1162068 1163498 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1162068..1163498 Escherichia coli LY180 16978759 YP_008564205.1 CDS opgC NC_022364.1 1163506 1164663 R required for the transfer of succinyl residues to osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein complement(1163506..1164663) Escherichia coli LY180 16978760 YP_008564206.1 CDS mdoG NC_022364.1 1165039 1166592 D involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1165039..1166592 Escherichia coli LY180 16978761 YP_008564207.1 CDS LY180_05445 NC_022364.1 1166585 1169128 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase 1166585..1169128 Escherichia coli LY180 16978762 YP_008564208.1 CDS LY180_05455 NC_022364.1 1169301 1169528 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 1169301..1169528 Escherichia coli LY180 16978764 YP_008564209.1 CDS LY180_05460 NC_022364.1 1169529 1169903 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY/SecA suppressor protein complement(1169529..1169903) Escherichia coli LY180 16978765 YP_008564210.1 CDS LY180_05465 NC_022364.1 1169986 1171212 R Confers resistance to fosfomycin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1169986..1171212) Escherichia coli LY180 16978766 YP_008564211.1 CDS LY180_05470 NC_022364.1 1171384 1172304 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis lauroyl acyltransferase complement(1171384..1172304) Escherichia coli LY180 16978767 YP_008564212.1 CDS LY180_05475 NC_022364.1 1172529 1173581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase 1172529..1173581 Escherichia coli LY180 16978768 YP_008564213.1 CDS LY180_05480 NC_022364.1 1173623 1174198 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1173623..1174198) Escherichia coli LY180 16978769 YP_008564214.1 CDS LY180_05485 NC_022364.1 1174202 1174768 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 complement(1174202..1174768) Escherichia coli LY180 16978770 YP_008564215.1 CDS LY180_05490 NC_022364.1 1174758 1174904 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1174758..1174904 Escherichia coli LY180 16978771 YP_008564216.1 CDS LY180_05495 NC_022364.1 1175029 1175169 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1175029..1175169) Escherichia coli LY180 16978772 YP_008564217.1 CDS solA NC_022364.1 1175190 1176308 R catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-methyltryptophan oxidase complement(1175190..1176308) Escherichia coli LY180 16978773 YP_008564218.1 CDS bssS NC_022364.1 1176423 1176677 R BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulatory protein BssS complement(1176423..1176677) Escherichia coli LY180 16978774 YP_008564219.1 CDS LY180_05510 NC_022364.1 1176967 1177212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein I complement(1176967..1177212) Escherichia coli LY180 16978775 YP_008564220.1 CDS LY180_05515 NC_022364.1 1177286 1178332 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroorotase complement(1177286..1178332) Escherichia coli LY180 16978776 YP_008564221.1 CDS LY180_05520 NC_022364.1 1178438 1178998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1178438..1178998) Escherichia coli LY180 16978777 YP_008564222.1 CDS LY180_05525 NC_022364.1 1179132 1179779 R cofactor involved in the reduction of disulfides; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(1179132..1179779) Escherichia coli LY180 16978778 YP_008564223.1 CDS LY180_05530 NC_022364.1 1179843 1181051 R Confers resistance to norfloxacin and enoxacin; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtH complement(1179843..1181051) Escherichia coli LY180 16978779 YP_008564224.1 CDS LY180_05535 NC_022364.1 1181287 1181871 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 1181287..1181871 Escherichia coli LY180 16978780 YP_008564225.1 CDS LY180_05540 NC_022364.1 1181882 1182529 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1181882..1182529 Escherichia coli LY180 16978781 YP_008564226.1 CDS LY180_05545 NC_022364.1 1182531 1183454 D Derived by automated computational analysis using gene prediction method: Protein Homology.; virulence factor MviM 1182531..1183454 Escherichia coli LY180 16978782 YP_008564227.1 CDS LY180_05550 NC_022364.1 1183564 1185099 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1183564..1185099 Escherichia coli LY180 16978783 YP_008564228.1 CDS LY180_05555 NC_022364.1 1185139 1185555 R export chaperone for FlgK and FlgL; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella synthesis chaperone protein FlgN complement(1185139..1185555) Escherichia coli LY180 16978784 YP_008564229.1 CDS LY180_05560 NC_022364.1 1185560 1185853 R regulates the flagellar specific sigma28 transcription factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma28 factor FlgM complement(1185560..1185853) Escherichia coli LY180 16978785 YP_008564230.1 CDS flgA NC_022364.1 1185929 1186588 R required for the assembly of the flagellar basal body P-ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring biosynthesis protein FlgA complement(1185929..1186588) Escherichia coli LY180 16978786 YP_008564231.1 CDS flgC NC_022364.1 1187164 1187568 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgC 1187164..1187568 Escherichia coli LY180 16978788 YP_008564232.1 CDS flgD NC_022364.1 1187580 1188275 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod modification protein 1187580..1188275 Escherichia coli LY180 16978789 YP_008564233.1 CDS flgE NC_022364.1 1188300 1189508 D the hook connects flagellar basal body to the flagellar filament; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook protein FlgE 1188300..1189508 Escherichia coli LY180 16978790 YP_008564234.1 CDS flgF NC_022364.1 1189528 1190283 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgF 1189528..1190283 Escherichia coli LY180 16978791 YP_008564235.1 CDS flgG NC_022364.1 1190455 1191237 D makes up the distal portion of the flagellar basal body rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body rod protein FlgG 1190455..1191237 Escherichia coli LY180 16978792 YP_008564236.1 CDS flgH NC_022364.1 1191290 1191988 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body L-ring protein 1191290..1191988 Escherichia coli LY180 16978793 YP_008564237.1 CDS flgI NC_022364.1 1192000 1193097 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body P-ring protein 1192000..1193097 Escherichia coli LY180 16978794 YP_008564238.1 CDS flgJ NC_022364.1 1193097 1194038 D Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar rod assembly protein FlgJ 1193097..1194038 Escherichia coli LY180 16978795 YP_008564239.1 CDS flgK NC_022364.1 1194104 1195747 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgK 1194104..1195747 Escherichia coli LY180 16978796 YP_008564240.1 CDS flgL NC_022364.1 1195759 1196712 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-associated protein FlgL 1195759..1196712 Escherichia coli LY180 16978797 YP_008564241.1 CDS rne NC_022364.1 1196909 1200094 R bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease E complement(1196909..1200094) Escherichia coli LY180 16978798 YP_008564242.1 CDS LY180_05630 NC_022364.1 1200175 1200549 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1200175..1200549 Escherichia coli LY180 16978799 YP_008564243.1 CDS LY180_05635 NC_022364.1 1200667 1201626 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase C 1200667..1201626 Escherichia coli LY180 16978800 YP_008564244.1 CDS LY180_05640 NC_022364.1 1201738 1202322 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(1201738..1202322) Escherichia coli LY180 16978801 YP_008564245.1 CDS LY180_05645 NC_022364.1 1202521 1203042 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1202521..1203042 Escherichia coli LY180 16978802 YP_008564246.1 CDS rpmF NC_022364.1 1203094 1203267 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L32 1203094..1203267 Escherichia coli LY180 16978803 YP_008564247.1 CDS LY180_05655 NC_022364.1 1203348 1204418 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acyltransferase 1203348..1204418 Escherichia coli LY180 16978804 YP_008564248.1 CDS LY180_05660 NC_022364.1 1204486 1205439 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1204486..1205439 Escherichia coli LY180 16978805 YP_008564249.1 CDS LY180_05665 NC_022364.1 1205455 1206384 D Derived by automated computational analysis using gene prediction method: Protein Homology.; malonyl CoA-ACP transacylase 1205455..1206384 Escherichia coli LY180 16978806 YP_008564250.1 CDS fabG NC_022364.1 1206397 1207131 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-ACP reductase 1206397..1207131 Escherichia coli LY180 16978807 YP_008564251.1 CDS acpP NC_022364.1 1207342 1207578 D carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl carrier protein 1207342..1207578 Escherichia coli LY180 16978808 YP_008564252.1 CDS LY180_05680 NC_022364.1 1207666 1208907 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase 1207666..1208907 Escherichia coli LY180 16978809 YP_008564253.1 CDS LY180_05685 NC_022364.1 1209027 1209836 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxychorismate lyase 1209027..1209836 Escherichia coli LY180 16978810 YP_008564254.1 CDS LY180_05690 NC_022364.1 1209839 1210861 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate lyase 1209839..1210861 Escherichia coli LY180 16978811 YP_008564255.1 CDS LY180_05695 NC_022364.1 1210851 1211492 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate kinase 1210851..1211492 Escherichia coli LY180 16978812 YP_008564256.1 CDS LY180_05700 NC_022364.1 1211489 1212493 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit delta' 1211489..1212493 Escherichia coli LY180 16978813 YP_008564257.1 CDS LY180_05705 NC_022364.1 1212504 1213301 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNAse 1212504..1213301 Escherichia coli LY180 16978814 YP_008564258.1 CDS LY180_05710 NC_022364.1 1213596 1215029 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIBC 1213596..1215029 Escherichia coli LY180 16978815 YP_008564259.1 CDS LY180_05715 NC_022364.1 1215089 1217278 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric-rhodotorulic acid outer membrane transporter complement(1215089..1217278) Escherichia coli LY180 16978816 YP_008564260.1 CDS LY180_05720 NC_022364.1 1217612 1217971 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphoramidase 1217612..1217971 Escherichia coli LY180 16978817 YP_008564261.1 CDS LY180_05725 NC_022364.1 1217974 1218351 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1217974..1218351 Escherichia coli LY180 16978818 YP_008564262.1 CDS LY180_05730 NC_022364.1 1218365 1219006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoB 1218365..1219006 Escherichia coli LY180 16978819 YP_008564263.1 CDS thiK NC_022364.1 1218987 1219811 D catalyzes the phosphorylation of thiamine to thiamine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine kinase 1218987..1219811 Escherichia coli LY180 16978820 YP_008564264.1 CDS LY180_05740 NC_022364.1 1219822 1220847 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-hexosaminidase 1219822..1220847 Escherichia coli LY180 16978821 YP_008564265.1 CDS LY180_05745 NC_022364.1 1220870 1221412 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1220870..1221412 Escherichia coli LY180 16978822 YP_008564266.1 CDS LY180_05750 NC_022364.1 1221820 1223124 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase 1221820..1223124 Escherichia coli LY180 16978823 YP_008564267.1 CDS LY180_05755 NC_022364.1 1223334 1223873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1223334..1223873 Escherichia coli LY180 16978824 YP_008564268.1 CDS LY180_05760 NC_022364.1 1223935 1224645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1223935..1224645) Escherichia coli LY180 16978825 YP_008564269.1 CDS LY180_05765 NC_022364.1 1224808 1225065 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multiple stress resistance protein BhsA 1224808..1225065 Escherichia coli LY180 16978826 YP_008564270.1 CDS LY180_05770 NC_022364.1 1225148 1226110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptigoglycan-binding protein LysM complement(1225148..1226110) Escherichia coli LY180 16978827 YP_008564271.1 CDS LY180_05775 NC_022364.1 1226254 1229700 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription-repair coupling factor complement(1226254..1229700) Escherichia coli LY180 16978828 YP_008564272.1 CDS LY180_05780 NC_022364.1 1229828 1230901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1229828..1230901) Escherichia coli LY180 16978829 YP_008564273.1 CDS LY180_05785 NC_022364.1 1231163 1232362 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1231163..1232362 Escherichia coli LY180 16978830 YP_008564274.1 CDS LY180_05790 NC_022364.1 1232355 1233056 D ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsE 1232355..1233056 Escherichia coli LY180 16978831 YP_008564275.1 CDS LY180_05795 NC_022364.1 1233056 1234300 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1233056..1234300 Escherichia coli LY180 16978832 YP_008564276.1 CDS LY180_05800 NC_022364.1 1234329 1235240 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-D-glucosamine kinase 1234329..1235240 Escherichia coli LY180 16978833 YP_008564277.1 CDS LY180_05805 NC_022364.1 1235256 1236077 D Modulates the activities of several enzymes which are inactive in their acetylated form; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent deacetylase 1235256..1236077 Escherichia coli LY180 16978834 YP_008564278.1 CDS LY180_05810 NC_022364.1 1236216 1237004 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1236216..1237004) Escherichia coli LY180 16978835 YP_008564279.1 CDS LY180_05815 NC_022364.1 1237001 1237462 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1237001..1237462) Escherichia coli LY180 16978836 YP_008564280.1 CDS potD NC_022364.1 1237520 1238566 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter substrate-binding protein complement(1237520..1238566) Escherichia coli LY180 16978837 YP_008564281.1 CDS potC NC_022364.1 1238563 1239357 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1238563..1239357) Escherichia coli LY180 16978838 YP_008564282.1 CDS potB NC_022364.1 1239354 1240211 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter permease complement(1239354..1240211) Escherichia coli LY180 16978839 YP_008564283.1 CDS potA NC_022364.1 1240195 1241331 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter ATPase complement(1240195..1241331) Escherichia coli LY180 16978840 YP_008564284.1 CDS LY180_05840 NC_022364.1 1241581 1242810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase T 1241581..1242810 Escherichia coli LY180 16978841 YP_008564285.1 CDS LY180_05845 NC_022364.1 1242956 1244077 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1242956..1244077) Escherichia coli LY180 16978842 YP_008564286.1 CDS LY180_05850 NC_022364.1 1244153 1245613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein PhoQ complement(1244153..1245613) Escherichia coli LY180 16978843 YP_008564287.1 CDS LY180_05855 NC_022364.1 1245613 1246284 R response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoP family transcriptional regulator complement(1245613..1246284) Escherichia coli LY180 16978844 YP_008564288.1 CDS LY180_05860 NC_022364.1 1246452 1247822 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate lyase complement(1246452..1247822) Escherichia coli LY180 16978845 YP_008564289.1 CDS LY180_05865 NC_022364.1 1247826 1248473 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysogenization regulator complement(1247826..1248473) Escherichia coli LY180 16978846 YP_008564290.1 CDS mnmA NC_022364.1 1248503 1249609 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiouridylase complement(1248503..1249609) Escherichia coli LY180 16978847 YP_008564291.1 CDS LY180_05875 NC_022364.1 1249663 1250124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(1249663..1250124) Escherichia coli LY180 16978848 YP_008564292.1 CDS LY180_05880 NC_022364.1 1250134 1250787 R catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase E complement(1250134..1250787) Escherichia coli LY180 16978849 YP_008564293.1 CDS LY180_05885 NC_022364.1 1250959 1252209 D Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate dehydrogenase 1250959..1252209 Escherichia coli LY180 16978850 YP_008564294.1 CDS LY180_05890 NC_022364.1 1252312 1252635 R interacts RssB preventing the degradation of the stress sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-adapter protein IraM complement(1252312..1252635) Escherichia coli LY180 16978851 YP_008564295.1 CDS LY180_05895 NC_022364.1 1253331 1253735 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1253331..1253735) Escherichia coli LY180 16978852 YP_008564296.1 CDS LY180_05900 NC_022364.1 1253956 1254687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator complement(1253956..1254687) Escherichia coli LY180 16978853 YP_008564297.1 CDS LY180_05905 NC_022364.1 1254892 1256103 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase complement(1254892..1256103) Escherichia coli LY180 16978854 YP_008564298.1 CDS LY180_05910 NC_022364.1 1256417 1256653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein YcgZ 1256417..1256653 Escherichia coli LY180 16978855 YP_008564299.1 CDS LY180_05915 NC_022364.1 1256696 1256968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein YmgA 1256696..1256968 Escherichia coli LY180 16978856 YP_008564300.1 CDS LY180_05920 NC_022364.1 1256997 1257263 D Derived by automated computational analysis using gene prediction method: Protein Homology.; two-component-system connector protein AriR 1256997..1257263 Escherichia coli LY180 16978857 YP_008564301.1 CDS LY180_05925 NC_022364.1 1257376 1257624 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1257376..1257624 Escherichia coli LY180 16978858 YP_008564302.1 CDS LY180_05930 NC_022364.1 1257956 1259479 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 1257956..1259479 Escherichia coli LY180 16978859 YP_008564303.1 CDS LY180_05935 NC_022364.1 1259611 1259829 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1259611..1259829 Escherichia coli LY180 16978860 YP_008564304.1 CDS LY180_05940 NC_022364.1 1260229 1260438 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATPase 1260229..1260438 Escherichia coli LY180 16978861 YP_008564305.1 CDS LY180_05945 NC_022364.1 1260846 1262876 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1260846..1262876 Escherichia coli LY180 16978862 YP_008564306.1 CDS LY180_05950 NC_022364.1 1262933 1263262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1262933..1263262) Escherichia coli LY180 16978863 YP_008564307.1 CDS LY180_05955 NC_022364.1 1263272 1263616 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1263272..1263616) Escherichia coli LY180 16978864 YP_008564308.1 CDS LY180_05960 NC_022364.1 1264294 1264536 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1264294..1264536 Escherichia coli LY180 16978865 YP_008564309.1 CDS minE NC_022364.1 1264908 1265174 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division topological specificity factor MinE complement(1264908..1265174) Escherichia coli LY180 16978866 YP_008564310.1 CDS LY180_05970 NC_022364.1 1265178 1265990 R ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibitor MinD complement(1265178..1265990) Escherichia coli LY180 16978867 YP_008564311.1 CDS minC NC_022364.1 1266014 1266709 R blocks the formation of polar Z-ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology.; septum formation inhibitor complement(1266014..1266709) Escherichia coli LY180 16978868 YP_008564312.1 CDS LY180_05980 NC_022364.1 1267229 1267597 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1267229..1267597 Escherichia coli LY180 16978869 YP_008564313.1 CDS LY180_05985 NC_022364.1 1267717 1268118 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Inhibitor of g-type lysozyme complement(1267717..1268118) Escherichia coli LY180 16978870 YP_008564314.1 CDS LY180_05995 NC_022364.1 1268327 1268653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1268327..1268653 Escherichia coli LY180 16978872 YP_008564315.1 CDS LY180_06000 NC_022364.1 1268725 1269384 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1268725..1269384 Escherichia coli LY180 16978873 YP_008564316.1 CDS LY180_06005 NC_022364.1 1269461 1269922 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1269461..1269922 Escherichia coli LY180 16978874 YP_008564317.1 CDS LY180_06010 NC_022364.1 1271411 1271830 D binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuD 1271411..1271830 Escherichia coli LY180 16982293 YP_008564318.1 CDS LY180_06015 NC_022364.1 1271830 1273098 D binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase V subunit UmuC 1271830..1273098 Escherichia coli LY180 16978876 YP_008564319.1 CDS LY180_06020 NC_022364.1 1273144 1273674 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; disulfide bond formation protein DsbB complement(1273144..1273674) Escherichia coli LY180 16978877 YP_008564320.1 CDS nhaB NC_022364.1 1273820 1275361 R involved in regulation of intracellular pH under alkaline conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter complement(1273820..1275361) Escherichia coli LY180 16978878 YP_008564321.1 CDS LY180_06030 NC_022364.1 1275582 1276301 D Multifunctional regulator of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty acid metabolism regulator 1275582..1276301 Escherichia coli LY180 16978879 YP_008564322.1 CDS LY180_06035 NC_022364.1 1276353 1277885 R Derived by automated computational analysis using gene prediction method: Protein Homology.; SpoVR family protein complement(1276353..1277885) Escherichia coli LY180 16978880 YP_008564323.1 CDS LY180_06040 NC_022364.1 1278215 1279513 D catalyzes the oxidative deamination of D-amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-amino acid dehydrogenase small subunit 1278215..1279513 Escherichia coli LY180 16978881 YP_008564324.1 CDS LY180_06045 NC_022364.1 1279523 1280593 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 1279523..1280593 Escherichia coli LY180 16978882 YP_008564325.1 CDS cvrA NC_022364.1 1280979 1282715 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium:proton antiporter complement(1280979..1282715) Escherichia coli LY180 16978883 YP_008564326.1 CDS ldcA NC_022364.1 1282810 1283724 R catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-carboxypeptidase A complement(1282810..1283724) Escherichia coli LY180 16978884 YP_008564327.1 CDS emtA NC_022364.1 1283824 1284435 D catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein endotransglycosylase E 1283824..1284435 Escherichia coli LY180 16978885 YP_008564328.1 CDS LY180_06065 NC_022364.1 1284437 1285171 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar brake protein YcgR complement(1284437..1285171) Escherichia coli LY180 16978886 YP_008564329.1 CDS LY180_06070 NC_022364.1 1285372 1285626 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1285372..1285626 Escherichia coli LY180 16978887 YP_008564330.1 CDS LY180_06075 NC_022364.1 1285804 1286244 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1285804..1286244 Escherichia coli LY180 16978888 YP_008564331.1 CDS treA NC_022364.1 1286323 1288020 R periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase complement(1286323..1288020) Escherichia coli LY180 16978889 YP_008564332.1 CDS LY180_06085 NC_022364.1 1288340 1289758 R phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxyacetone kinase subunit M complement(1288340..1289758) Escherichia coli LY180 16978890 YP_008564333.1 CDS LY180_06090 NC_022364.1 1289769 1290401 R with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxyacetone kinase subunit DhaL complement(1289769..1290401) Escherichia coli LY180 16978891 YP_008564334.1 CDS LY180_06095 NC_022364.1 1290412 1291482 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; dihydroxyacetone kinase subunit K complement(1290412..1291482) Escherichia coli LY180 16978892 YP_008564335.1 CDS LY180_06100 NC_022364.1 1291710 1293629 D Positively regulates the dhaKLM operon from a sigma-70 promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 1291710..1293629 Escherichia coli LY180 16978893 YP_008564336.1 CDS LY180_06105 NC_022364.1 1296959 1297162 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1296959..1297162 Escherichia coli LY180 16982288 YP_008564337.1 CDS ychF NC_022364.1 1297455 1298546 R EngD; translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YchF complement(1297455..1298546) Escherichia coli LY180 16978895 YP_008564338.1 CDS LY180_06115 NC_022364.1 1298663 1299247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-tRNA hydrolase complement(1298663..1299247) Escherichia coli LY180 16978896 YP_008564339.1 CDS LY180_06120 NC_022364.1 1299525 1299803 D YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1299525..1299803 Escherichia coli LY180 16978897 YP_008564340.1 CDS LY180_06125 NC_022364.1 1299858 1301537 R role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1299858..1301537) Escherichia coli LY180 16978898 YP_008564341.1 CDS LY180_06130 NC_022364.1 1301662 1302675 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose-phosphate pyrophosphokinase complement(1301662..1302675) Escherichia coli LY180 16978899 YP_008564342.1 CDS LY180_06135 NC_022364.1 1302760 1303611 R Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase complement(1302760..1303611) Escherichia coli LY180 16978900 YP_008564343.1 CDS lolB NC_022364.1 1303611 1304234 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein LolB complement(1303611..1304234) Escherichia coli LY180 16978901 YP_008564344.1 CDS hemA NC_022364.1 1304448 1305704 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamyl-tRNA reductase 1304448..1305704 Escherichia coli LY180 16978902 YP_008564345.1 CDS prfA NC_022364.1 1305746 1306828 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 1305746..1306828 Escherichia coli LY180 16978903 YP_008564346.1 CDS LY180_06155 NC_022364.1 1306828 1307661 D HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1306828..1307661 Escherichia coli LY180 16978904 YP_008564347.1 CDS LY180_06160 NC_022364.1 1307658 1308050 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1307658..1308050 Escherichia coli LY180 16978905 YP_008564348.1 CDS LY180_06165 NC_022364.1 1308054 1308863 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1308054..1308863 Escherichia coli LY180 16978906 YP_008564349.1 CDS LY180_06170 NC_022364.1 1308899 1309753 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxyphosphooctonate aldolase 1308899..1309753 Escherichia coli LY180 16978907 YP_008564350.1 CDS LY180_06175 NC_022364.1 1309902 1310009 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1309902..1310009) Escherichia coli LY180 16978908 YP_008564351.1 CDS LY180_06180 NC_022364.1 1310437 1310544 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1310437..1310544) Escherichia coli LY180 16978909 YP_008564352.1 CDS LY180_06185 NC_022364.1 1310973 1311080 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1310973..1311080) Escherichia coli LY180 16978910 YP_008564353.1 CDS LY180_06190 NC_022364.1 1311485 1312561 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter complement(1311485..1312561) Escherichia coli LY180 16978911 YP_008564354.1 CDS LY180_06195 NC_022364.1 1312558 1313766 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1312558..1313766) Escherichia coli LY180 16978912 YP_008564355.1 CDS chaB NC_022364.1 1314193 1314423 D in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; cation transport regulator 1314193..1314423 Escherichia coli LY180 16978913 YP_008564356.1 CDS LY180_06205 NC_022364.1 1315319 1315672 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1315319..1315672) Escherichia coli LY180 16978914 YP_008564357.1 CDS LY180_06210 NC_022364.1 1315857 1317251 D Derived by automated computational analysis using gene prediction method: Protein Homology.; invasin 1315857..1317251 Escherichia coli LY180 16978915 YP_008564358.1 CDS LY180_06215 NC_022364.1 1317252 1317902 R two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1317252..1317902) Escherichia coli LY180 16978916 YP_008564359.1 CDS LY180_06220 NC_022364.1 1317895 1319691 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarX complement(1317895..1319691) Escherichia coli LY180 16978917 YP_008564360.1 CDS LY180_06225 NC_022364.1 1320030 1321421 D involved in the transport of nitrate and nitrite; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate transporter 1320030..1321421 Escherichia coli LY180 16978918 YP_008564361.1 CDS narZ NC_022364.1 1321937 1325680 D with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha 1321937..1325680 Escherichia coli LY180 16978919 YP_008564362.1 CDS narH NC_022364.1 1325677 1327215 D with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta 1325677..1327215 Escherichia coli LY180 16978920 YP_008564363.1 CDS LY180_06240 NC_022364.1 1327212 1327922 D delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ 1327212..1327922 Escherichia coli LY180 16978921 YP_008564364.1 CDS narI NC_022364.1 1327922 1328599 D with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma 1327922..1328599 Escherichia coli LY180 16978922 YP_008564365.1 CDS LY180_06250 NC_022364.1 1328782 1328961 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1328782..1328961 Escherichia coli LY180 16978923 YP_008564366.1 CDS LY180_06265 NC_022364.1 1329325 1330167 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formyltetrahydrofolate deformylase complement(1329325..1330167) Escherichia coli LY180 16978926 YP_008564367.1 CDS LY180_06270 NC_022364.1 1330217 1330576 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1330217..1330576) Escherichia coli LY180 16978927 YP_008564368.1 CDS LY180_06275 NC_022364.1 1330788 1331693 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1330788..1331693 Escherichia coli LY180 16978928 YP_008564369.1 CDS LY180_06280 NC_022364.1 1331785 1332798 D Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator 1331785..1332798 Escherichia coli LY180 16978929 YP_008564370.1 CDS LY180_06285 NC_022364.1 1333000 1333908 D together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1333000..1333908 Escherichia coli LY180 16978930 YP_008564371.1 CDS LY180_06290 NC_022364.1 1334052 1334465 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(1334052..1334465) Escherichia coli LY180 16978931 YP_008564372.1 CDS LY180_06295 NC_022364.1 1335070 1335687 D catalyzes the formation of thymidine 5'-phosphate from thymidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine kinase 1335070..1335687 Escherichia coli LY180 16978932 YP_008564373.1 CDS LY180_06300 NC_022364.1 1335989 1336492 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; bifunctional acetaldehyde-CoA/alcohol dehydrogenase complement(1335989..1336492) Escherichia coli LY180 16978933 YP_008564374.1 CDS LY180_06305 NC_022364.1 1336964 1337920 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipase complement(1336964..1337920) Escherichia coli LY180 16978934 YP_008564375.1 CDS LY180_06310 NC_022364.1 1338139 1338708 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alcohol dehydrogenase complement(1338139..1338708) Escherichia coli LY180 16978935 YP_008564376.1 CDS LY180_06315 NC_022364.1 1339185 1339832 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1339185..1339832 Escherichia coli LY180 16978936 YP_008564377.1 CDS LY180_06320 NC_022364.1 1340525 1342201 D is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1340525..1342201 Escherichia coli LY180 16978937 YP_008564378.1 CDS oppB NC_022364.1 1342287 1343207 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1342287..1343207 Escherichia coli LY180 16978938 YP_008564379.1 CDS LY180_06330 NC_022364.1 1343222 1344130 D with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1343222..1344130 Escherichia coli LY180 16978939 YP_008564380.1 CDS dppD NC_022364.1 1344142 1345155 D DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1344142..1345155 Escherichia coli LY180 16978940 YP_008564381.1 CDS dppF NC_022364.1 1345152 1346156 D Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein 1345152..1346156 Escherichia coli LY180 16978941 YP_008564382.1 CDS LY180_06345 NC_022364.1 1346209 1346538 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; dsDNA-mimic protein complement(1346209..1346538) Escherichia coli LY180 16978942 YP_008564383.1 CDS cls NC_022364.1 1346573 1348033 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); Derived by automated computational analysis using gene prediction method: Protein Homology.; cardiolipin synthetase complement(1346573..1348033) Escherichia coli LY180 16978943 YP_008564384.1 CDS LY180_06355 NC_022364.1 1348404 1349657 R Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated potassium channel complement(1348404..1349657) Escherichia coli LY180 16978944 YP_008564385.1 CDS LY180_06360 NC_022364.1 1349957 1350253 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1349957..1350253) Escherichia coli LY180 16978945 YP_008564386.1 CDS LY180_06365 NC_022364.1 1350462 1351196 D membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1350462..1351196 Escherichia coli LY180 16978946 YP_008564387.1 CDS LY180_06370 NC_022364.1 1351236 1351634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(1351236..1351634) Escherichia coli LY180 16978947 YP_008564388.1 CDS LY180_06375 NC_022364.1 1351739 1352278 R Involved in cell division; probably involved in intracellular septation; Derived by automated computational analysis using gene prediction method: Protein Homology.; intracellular septation protein A complement(1351739..1352278) Escherichia coli LY180 16978948 YP_008564389.1 CDS LY180_06380 NC_022364.1 1352308 1353051 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1352308..1353051) Escherichia coli LY180 16978949 YP_008564390.1 CDS LY180_06385 NC_022364.1 1353408 1354046 D receptor for colicin S4; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane protein W 1353408..1354046 Escherichia coli LY180 16978950 YP_008564391.1 CDS LY180_06390 NC_022364.1 1354106 1354612 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1354106..1354612) Escherichia coli LY180 16978951 YP_008564392.1 CDS LY180_06395 NC_022364.1 1354658 1355158 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1354658..1355158) Escherichia coli LY180 16978952 YP_008564393.1 CDS LY180_06400 NC_022364.1 1355244 1355423 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1355244..1355423) Escherichia coli LY180 16978953 YP_008564394.1 CDS LY180_06405 NC_022364.1 1355804 1356610 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit alpha complement(1355804..1356610) Escherichia coli LY180 16978954 YP_008564395.1 CDS LY180_06410 NC_022364.1 1356610 1357803 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan synthase subunit beta complement(1356610..1357803) Escherichia coli LY180 16978955 YP_008564396.1 CDS LY180_06415 NC_022364.1 1357815 1359176 R monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylanthranilate isomerase complement(1357815..1359176) Escherichia coli LY180 16978956 YP_008564397.1 CDS LY180_06420 NC_022364.1 1359177 1360772 R bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate phosphoribosyltransferase complement(1359177..1360772) Escherichia coli LY180 16978957 YP_008564398.1 CDS LY180_06425 NC_022364.1 1360772 1362334 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit I complement(1360772..1362334) Escherichia coli LY180 16978958 YP_008564399.1 CDS LY180_06430 NC_022364.1 1362608 1363489 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine tRNA ribosyltransferase 1362608..1363489 Escherichia coli LY180 16978959 YP_008564400.1 CDS LY180_06435 NC_022364.1 1363486 1364106 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1363486..1364106 Escherichia coli LY180 16978960 YP_008564401.1 CDS LY180_06440 NC_022364.1 1364207 1365079 D catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridylate synthase B 1364207..1365079 Escherichia coli LY180 16978961 YP_008564402.1 CDS LY180_06445 NC_022364.1 1365119 1365709 R catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase complement(1365119..1365709) Escherichia coli LY180 16978962 YP_008564403.1 CDS LY180_06450 NC_022364.1 1365706 1366464 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxoacyl-ACP reductase complement(1365706..1366464) Escherichia coli LY180 16978963 YP_008564404.1 CDS LY180_06455 NC_022364.1 1366684 1367733 D multicopy suppressor of htrA(degP); Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 1366684..1367733 Escherichia coli LY180 16978964 YP_008564405.1 CDS LY180_06460 NC_022364.1 1367769 1368020 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1367769..1368020) Escherichia coli LY180 16978965 YP_008564406.1 CDS LY180_06465 NC_022364.1 1368400 1370997 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; topoisomerase I 1368400..1370997 Escherichia coli LY180 16978966 YP_008564407.1 CDS cysB NC_022364.1 1371207 1372181 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; CysB family transcriptional regulator 1371207..1372181 Escherichia coli LY180 16978967 YP_008564408.1 CDS LY180_06475 NC_022364.1 1372512 1372640 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1372512..1372640 Escherichia coli LY180 16978968 YP_008564409.1 CDS LY180_06480 NC_022364.1 1372643 1372810 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1372643..1372810 Escherichia coli LY180 16978969 YP_008564410.1 CDS LY180_06485 NC_022364.1 1372884 1373009 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1372884..1373009) Escherichia coli LY180 16978970 YP_008564411.1 CDS LY180_06490 NC_022364.1 1373183 1375858 D Catalyzes the conversion of citrate to isocitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aconitate hydratase 1373183..1375858 Escherichia coli LY180 16978971 YP_008564412.1 CDS ribA NC_022364.1 1375922 1376512 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase II complement(1375922..1376512) Escherichia coli LY180 16978972 YP_008564413.1 CDS LY180_06500 NC_022364.1 1376682 1377446 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphatase B 1376682..1377446 Escherichia coli LY180 16978973 YP_008564414.1 CDS LY180_06505 NC_022364.1 1377595 1377903 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1377595..1377903 Escherichia coli LY180 16978974 YP_008564415.1 CDS LY180_06510 NC_022364.1 1377910 1379079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1377910..1379079 Escherichia coli LY180 16978975 YP_008564416.1 CDS LY180_06515 NC_022364.1 1379212 1380009 D Derived by automated computational analysis using gene prediction method: Protein Homology.; orotidine 5'-phosphate decarboxylase 1379212..1380009 Escherichia coli LY180 16978976 YP_008564417.1 CDS LY180_06520 NC_022364.1 1380009 1380335 D involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor Sui1 1380009..1380335 Escherichia coli LY180 16978977 YP_008564418.1 CDS LY180_06525 NC_022364.1 1380461 1380679 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1380461..1380679) Escherichia coli LY180 16978978 YP_008564419.1 CDS LY180_06530 NC_022364.1 1380948 1381697 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(1380948..1381697) Escherichia coli LY180 16978979 YP_008564420.1 CDS LY180_06535 NC_022364.1 1381787 1381960 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1381787..1381960) Escherichia coli LY180 16978980 YP_008564421.1 CDS LY180_06540 NC_022364.1 1382107 1384092 R c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase II stability modulator complement(1382107..1384092) Escherichia coli LY180 16978981 YP_008564422.1 CDS LY180_06545 NC_022364.1 1384146 1384292 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1384146..1384292 Escherichia coli LY180 16978982 YP_008564423.1 CDS LY180_06550 NC_022364.1 1384329 1386263 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease II complement(1384329..1386263) Escherichia coli LY180 16978983 YP_008564424.1 CDS LY180_06555 NC_022364.1 1386331 1387458 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1386331..1387458) Escherichia coli LY180 16978984 YP_008564425.1 CDS LY180_06560 NC_022364.1 1387603 1388391 R Catalyzes a key regulatory step in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-ACP reductase complement(1387603..1388391) Escherichia coli LY180 16978985 YP_008564426.1 CDS LY180_06565 NC_022364.1 1388761 1389114 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1388761..1389114) Escherichia coli LY180 16978986 YP_008564427.1 CDS dppF NC_022364.1 1389182 1389988 R Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(1389182..1389988) Escherichia coli LY180 16978987 YP_008564428.1 CDS dppD NC_022364.1 1389990 1390982 R DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter ATP-binding protein complement(1389990..1390982) Escherichia coli LY180 16978988 YP_008564429.1 CDS LY180_06580 NC_022364.1 1390982 1391872 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1390982..1391872) Escherichia coli LY180 16978989 YP_008564430.1 CDS LY180_06585 NC_022364.1 1391859 1392824 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1391859..1392824) Escherichia coli LY180 16978990 YP_008564431.1 CDS LY180_06590 NC_022364.1 1392821 1394464 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1392821..1394464) Escherichia coli LY180 16978991 YP_008564432.1 CDS LY180_06595 NC_022364.1 1394777 1395022 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1394777..1395022) Escherichia coli LY180 16978992 YP_008564433.1 CDS LY180_06600 NC_022364.1 1395156 1396541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Putrescine importer PuuP complement(1395156..1396541) Escherichia coli LY180 16978993 YP_008564434.1 CDS LY180_06605 NC_022364.1 1396844 1398262 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylputrescine synthetase complement(1396844..1398262) Escherichia coli LY180 16978994 YP_008564435.1 CDS puuD NC_022364.1 1398474 1399238 D catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyl-gamma-aminobutyrate hydrolase 1398474..1399238 Escherichia coli LY180 16978995 YP_008564436.1 CDS LY180_06615 NC_022364.1 1399265 1399822 D regulates genes involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 1399265..1399822 Escherichia coli LY180 16978996 YP_008564437.1 CDS LY180_06620 NC_022364.1 1400097 1401584 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 1400097..1401584 Escherichia coli LY180 16978997 YP_008564438.1 CDS LY180_06625 NC_022364.1 1401586 1402866 D catalyzes the formation of gamma-glutamyl-gamma-aminobutyraldehyde from gamma-glutamylputrescine; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylputrescine oxidoreductase 1401586..1402866 Escherichia coli LY180 16978998 YP_008564439.1 CDS LY180_06630 NC_022364.1 1402904 1404169 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-aminobutyrate aminotransferase 1402904..1404169 Escherichia coli LY180 16978999 YP_008564440.1 CDS pspF NC_022364.1 1404289 1405281 R transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1404289..1405281) Escherichia coli LY180 16979000 YP_008564441.1 CDS LY180_06640 NC_022364.1 1405433 1406101 D involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1405433..1406101 Escherichia coli LY180 16979001 YP_008564442.1 CDS pspB NC_022364.1 1406155 1406379 D DNA-binding transcriptional regulator; acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1406155..1406379 Escherichia coli LY180 16979002 YP_008564443.1 CDS LY180_06650 NC_022364.1 1406379 1406738 D with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1406379..1406738 Escherichia coli LY180 16979003 YP_008564444.1 CDS LY180_06655 NC_022364.1 1406747 1406968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 1406747..1406968 Escherichia coli LY180 16979004 YP_008564445.1 CDS LY180_06660 NC_022364.1 1407043 1407357 D rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate:cyanide sulfurtransferase 1407043..1407357 Escherichia coli LY180 16979005 YP_008564446.1 CDS LY180_06665 NC_022364.1 1407570 1409249 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sucrose phosphorylase 1407570..1409249 Escherichia coli LY180 16979006 YP_008564447.1 CDS LY180_06670 NC_022364.1 1409263 1410555 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter substrate-binding protein 1409263..1410555 Escherichia coli LY180 16979007 YP_008564448.1 CDS LY180_06675 NC_022364.1 1410576 1411457 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter permease 1410576..1411457 Escherichia coli LY180 16979008 YP_008564449.1 CDS LY180_06680 NC_022364.1 1411444 1412286 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter permease 1411444..1412286 Escherichia coli LY180 16979009 YP_008564450.1 CDS LY180_06685 NC_022364.1 1412317 1413369 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; alcohol dehydrogenase 1412317..1413369 Escherichia coli LY180 16979010 YP_008564451.1 CDS LY180_06690 NC_022364.1 1413387 1414175 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1413387..1414175 Escherichia coli LY180 16979011 YP_008564452.1 CDS LY180_06695 NC_022364.1 1414197 1415240 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxidoreductase 1414197..1415240 Escherichia coli LY180 16979012 YP_008564453.1 CDS LY180_06700 NC_022364.1 1415237 1417504 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl hydrolase family 65 1415237..1417504 Escherichia coli LY180 16979013 YP_008564454.1 CDS LY180_06705 NC_022364.1 1417501 1418160 D catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta-phosphoglucomutase 1417501..1418160 Escherichia coli LY180 16979014 YP_008564455.1 CDS LY180_06710 NC_022364.1 1418174 1419256 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 1418174..1419256 Escherichia coli LY180 16979015 YP_008564456.1 CDS LY180_06715 NC_022364.1 1419301 1420206 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1419301..1420206 Escherichia coli LY180 16979016 YP_008564457.1 CDS LY180_06720 NC_022364.1 1420317 1421315 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator complement(1420317..1421315) Escherichia coli LY180 16979017 YP_008564458.1 CDS LY180_06725 NC_022364.1 1421470 1422867 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1421470..1422867 Escherichia coli LY180 16979018 YP_008564459.1 CDS LY180_06730 NC_022364.1 1422864 1423925 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1422864..1423925 Escherichia coli LY180 16979019 YP_008564460.1 CDS LY180_06735 NC_022364.1 1424073 1425614 D regulates genes involved in the biosynthesis and transport of aromatic amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1424073..1425614 Escherichia coli LY180 16979020 YP_008564461.1 CDS tpx NC_022364.1 1425658 1426164 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid hydroperoxide peroxidase complement(1425658..1426164) Escherichia coli LY180 16979021 YP_008564462.1 CDS LY180_06745 NC_022364.1 1426283 1427248 D catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-Ala-D/L-Glu epimerase 1426283..1427248 Escherichia coli LY180 16979022 YP_008564463.1 CDS LY180_06750 NC_022364.1 1427223 1427951 R Derived by automated computational analysis using gene prediction method: Protein Homology.; murein peptide amidase A complement(1427223..1427951) Escherichia coli LY180 16979023 YP_008564464.1 CDS LY180_06755 NC_022364.1 1428242 1428892 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent dehydratase complement(1428242..1428892) Escherichia coli LY180 16979024 YP_008564465.1 CDS LY180_06760 NC_022364.1 1428898 1429665 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha/beta hydrolase complement(1428898..1429665) Escherichia coli LY180 16979025 YP_008564466.1 CDS LY180_06765 NC_022364.1 1429830 1430762 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1429830..1430762) Escherichia coli LY180 16979026 YP_008564467.1 CDS LY180_06770 NC_022364.1 1430888 1431787 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 1430888..1431787 Escherichia coli LY180 16979027 YP_008564468.1 CDS LY180_06775 NC_022364.1 1432124 1433737 D is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 1432124..1433737 Escherichia coli LY180 16979028 YP_008564469.1 CDS LY180_06780 NC_022364.1 1433788 1434819 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MscS family inner membrane protein YnaI complement(1433788..1434819) Escherichia coli LY180 16979029 YP_008564470.1 CDS LY180_06785 NC_022364.1 1435063 1435320 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1435063..1435320 Escherichia coli LY180 16979030 YP_008564471.1 CDS LY180_06790 NC_022364.1 1435370 1436320 R with UspC and UspD is involved in resistance to UV irradiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein E complement(1435370..1436320) Escherichia coli LY180 16979031 YP_008564472.1 CDS LY180_06795 NC_022364.1 1436472 1437224 R Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate/nitrate reduction transcriptional regulator complement(1436472..1437224) Escherichia coli LY180 16979032 YP_008564473.1 CDS LY180_06800 NC_022364.1 1437419 1437934 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-6-alkylguanine-DNA:cysteine-protein methyltransferase complement(1437419..1437934) Escherichia coli LY180 16979033 YP_008564474.1 CDS LY180_06805 NC_022364.1 1437945 1439471 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1437945..1439471) Escherichia coli LY180 16979034 YP_008564475.1 CDS LY180_06810 NC_022364.1 1439508 1440953 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M20 complement(1439508..1440953) Escherichia coli LY180 16979035 YP_008564476.1 CDS LY180_06815 NC_022364.1 1440953 1442263 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M20 complement(1440953..1442263) Escherichia coli LY180 16979036 YP_008564477.1 CDS LY180_06820 NC_022364.1 1442339 1442440 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1442339..1442440) Escherichia coli LY180 16979037 YP_008564478.1 CDS LY180_06825 NC_022364.1 1442439 1443347 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 1442439..1443347 Escherichia coli LY180 16979038 YP_008564479.1 CDS LY180_06830 NC_022364.1 1443677 1444240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA endonuclease SmrA 1443677..1444240 Escherichia coli LY180 16979039 YP_008564480.1 CDS LY180_06835 NC_022364.1 1444261 1445493 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; diguanylate cyclase complement(1444261..1445493) Escherichia coli LY180 16979040 YP_008564481.1 CDS zntB NC_022364.1 1445748 1446731 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 1445748..1446731 Escherichia coli LY180 16979041 YP_008564482.1 CDS LY180_06845 NC_022364.1 1447209 1448582 D exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1447209..1448582 Escherichia coli LY180 16979042 YP_008564483.1 CDS LY180_06850 NC_022364.1 1448711 1449646 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; forms 2-thiocytidine (s(2)C); Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tRNA 2-thiocytidine biosynthesis protein TtcA complement(1448711..1449646) Escherichia coli LY180 16979043 YP_008564484.1 CDS LY180_06855 NC_022364.1 1449698 1450933 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(1449698..1450933) Escherichia coli LY180 16979044 YP_008564485.1 CDS LY180_06860 NC_022364.1 1450935 1451150 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1450935..1451150) Escherichia coli LY180 16979045 YP_008564486.1 CDS LY180_06865 NC_022364.1 1451229 1451510 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; gydaC complement(1451229..1451510) Escherichia coli LY180 16979046 YP_008564487.1 CDS LY180_06875 NC_022364.1 1452484 1455084 R Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VIII complement(1452484..1455084) Escherichia coli LY180 16979048 YP_008564488.1 CDS LY180_06880 NC_022364.1 1455186 1455461 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1455186..1455461) Escherichia coli LY180 16979049 YP_008564489.1 CDS LY180_06885 NC_022364.1 1455536 1455712 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1455536..1455712) Escherichia coli LY180 16979050 YP_008564490.1 CDS LY180_06890 NC_022364.1 1455706 1455927 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsZ complement(1455706..1455927) Escherichia coli LY180 16979051 YP_008564491.1 CDS LY180_06895 NC_022364.1 1456142 1456351 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1456142..1456351 Escherichia coli LY180 16979052 YP_008564492.1 CDS LY180_06900 NC_022364.1 1456348 1456500 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1456348..1456500) Escherichia coli LY180 16979053 YP_008564493.1 CDS LY180_06905 NC_022364.1 1456511 1456645 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1456511..1456645) Escherichia coli LY180 16979054 YP_008564494.1 CDS LY180_06910 NC_022364.1 1456931 1457350 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; XRE family transcriptional regulator complement(1456931..1457350) Escherichia coli LY180 16979055 YP_008564495.1 CDS LY180_06915 NC_022364.1 1457430 1457684 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Cro/Cl family transcriptional regulator 1457430..1457684 Escherichia coli LY180 16979056 YP_008564496.1 CDS LY180_06920 NC_022364.1 1457681 1458103 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1457681..1458103 Escherichia coli LY180 16979057 YP_008564497.1 CDS LY180_06925 NC_022364.1 1458116 1458973 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1458116..1458973 Escherichia coli LY180 16979058 YP_008564498.1 CDS LY180_06930 NC_022364.1 1458980 1459726 D acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC 1458980..1459726 Escherichia coli LY180 16979059 YP_008564499.1 CDS LY180_06935 NC_022364.1 1459749 1460510 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1459749..1460510 Escherichia coli LY180 16979060 YP_008564500.1 CDS LY180_06940 NC_022364.1 1460526 1460948 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1460526..1460948 Escherichia coli LY180 16979061 YP_008564501.1 CDS LY180_06945 NC_022364.1 1461132 1462259 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1461132..1462259 Escherichia coli LY180 16979062 YP_008564502.1 CDS LY180_06950 NC_022364.1 1462252 1463361 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ATP-dependent endonuclease 1462252..1463361 Escherichia coli LY180 16979063 YP_008564503.1 CDS LY180_06955 NC_022364.1 1463358 1464335 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1463358..1464335 Escherichia coli LY180 16979064 YP_008564504.1 CDS LY180_06960 NC_022364.1 1464939 1465121 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 1464939..1465121 Escherichia coli LY180 16979065 YP_008564505.1 CDS LY180_06965 NC_022364.1 1465590 1466189 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1465590..1466189 Escherichia coli LY180 16979066 YP_008564506.1 CDS LY180_06970 NC_022364.1 1466189 1466479 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1466189..1466479 Escherichia coli LY180 16979067 YP_008564507.1 CDS LY180_06975 NC_022364.1 1466476 1467012 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1466476..1467012 Escherichia coli LY180 16979068 YP_008564508.1 CDS LY180_06990 NC_022364.1 1468695 1468940 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; holin 1468695..1468940 Escherichia coli LY180 16979071 YP_008564509.1 CDS LY180_06995 NC_022364.1 1468943 1469320 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M15 1468943..1469320 Escherichia coli LY180 16979072 YP_008564510.1 CDS LY180_07000 NC_022364.1 1469362 1469517 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1469362..1469517 Escherichia coli LY180 16979073 YP_008564511.1 CDS LY180_07005 NC_022364.1 1469691 1469798 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1469691..1469798 Escherichia coli LY180 16979074 YP_008564512.1 CDS LY180_07010 NC_022364.1 1469922 1470710 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 1469922..1470710 Escherichia coli LY180 16979075 YP_008564513.1 CDS LY180_07015 NC_022364.1 1470703 1471635 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1470703..1471635 Escherichia coli LY180 16979076 YP_008564514.1 CDS LY180_07020 NC_022364.1 1471613 1471822 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1471613..1471822 Escherichia coli LY180 16979077 YP_008564515.1 CDS LY180_07025 NC_022364.1 1471826 1472917 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; terminase small subunit 1471826..1472917 Escherichia coli LY180 16979078 YP_008564516.1 CDS LY180_07030 NC_022364.1 1472907 1474235 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; terminase 1472907..1474235 Escherichia coli LY180 16979079 YP_008564517.1 CDS LY180_07035 NC_022364.1 1474254 1475690 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1474254..1475690 Escherichia coli LY180 16979080 YP_008564518.1 CDS LY180_07040 NC_022364.1 1475635 1476468 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1475635..1476468 Escherichia coli LY180 16979081 YP_008564519.1 CDS LY180_07045 NC_022364.1 1476449 1477771 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; NUDIX hydrolase 1476449..1477771 Escherichia coli LY180 16979082 YP_008564520.1 CDS LY180_07050 NC_022364.1 1477764 1478381 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1477764..1478381 Escherichia coli LY180 16979083 YP_008564521.1 CDS LY180_07055 NC_022364.1 1478396 1479424 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1478396..1479424 Escherichia coli LY180 16979084 YP_008564522.1 CDS LY180_07060 NC_022364.1 1479482 1479952 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1479482..1479952 Escherichia coli LY180 16979085 YP_008564523.1 CDS LY180_07065 NC_022364.1 1479952 1480392 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1479952..1480392 Escherichia coli LY180 16979086 YP_008564524.1 CDS LY180_07070 NC_022364.1 1480389 1480829 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1480389..1480829 Escherichia coli LY180 16979087 YP_008564525.1 CDS LY180_07075 NC_022364.1 1480816 1481760 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1480816..1481760 Escherichia coli LY180 16979088 YP_008564526.1 CDS LY180_07080 NC_022364.1 1481760 1483097 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1481760..1483097 Escherichia coli LY180 16979089 YP_008564527.1 CDS LY180_07085 NC_022364.1 1483121 1483552 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1483121..1483552 Escherichia coli LY180 16979090 YP_008564528.1 CDS LY180_07090 NC_022364.1 1483549 1484166 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1483549..1484166 Escherichia coli LY180 16979091 YP_008564529.1 CDS LY180_07095 NC_022364.1 1484245 1486218 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lytic transglycosylase 1484245..1486218 Escherichia coli LY180 16979092 YP_008564530.1 CDS LY180_07100 NC_022364.1 1486222 1486890 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1486222..1486890 Escherichia coli LY180 16979093 YP_008564531.1 CDS LY180_07105 NC_022364.1 1486887 1487153 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1486887..1487153 Escherichia coli LY180 16979094 YP_008564532.1 CDS LY180_07110 NC_022364.1 1487153 1488160 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1487153..1488160 Escherichia coli LY180 16979095 YP_008564533.1 CDS LY180_07115 NC_022364.1 1488160 1488873 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage baseplate protein 1488160..1488873 Escherichia coli LY180 16979096 YP_008564534.1 CDS LY180_07120 NC_022364.1 1488983 1489180 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1488983..1489180 Escherichia coli LY180 16979097 YP_008564535.1 CDS LY180_07125 NC_022364.1 1489416 1489562 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1489416..1489562 Escherichia coli LY180 16979098 YP_008564536.1 CDS LY180_07130 NC_022364.1 1489570 1489917 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1489570..1489917 Escherichia coli LY180 16979099 YP_008564537.1 CDS LY180_07135 NC_022364.1 1490055 1490282 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1490055..1490282 Escherichia coli LY180 16979100 YP_008564538.1 CDS LY180_07140 NC_022364.1 1490308 1490847 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1490308..1490847) Escherichia coli LY180 16979101 YP_008564539.1 CDS LY180_07145 NC_022364.1 1490890 1492095 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1490890..1492095 Escherichia coli LY180 16979102 YP_008564540.1 CDS LY180_07150 NC_022364.1 1492079 1492705 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1492079..1492705 Escherichia coli LY180 16979103 YP_008564541.1 CDS LY180_07155 NC_022364.1 1492702 1494255 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 1492702..1494255 Escherichia coli LY180 16979104 YP_008564542.1 CDS LY180_07160 NC_022364.1 1494258 1494803 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 1494258..1494803 Escherichia coli LY180 16979105 YP_008564543.1 CDS LY180_07165 NC_022364.1 1494827 1497967 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; shikimate transporter 1494827..1497967 Escherichia coli LY180 16979106 YP_008564544.1 CDS LY180_07170 NC_022364.1 1497982 1498554 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1497982..1498554 Escherichia coli LY180 16979107 YP_008564545.1 CDS LY180_07175 NC_022364.1 1499094 1499528 R Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein F complement(1499094..1499528) Escherichia coli LY180 16979108 YP_008564546.1 CDS LY180_07180 NC_022364.1 1499669 1500802 R allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C complement(1499669..1500802) Escherichia coli LY180 16979109 YP_008564547.1 CDS LY180_07185 NC_022364.1 1501169 1504693 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate-flavodoxin oxidoreductase complement(1501169..1504693) Escherichia coli LY180 16979110 YP_008564548.1 CDS LY180_07190 NC_022364.1 1504967 1505233 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1504967..1505233 Escherichia coli LY180 16979111 YP_008564549.1 CDS LY180_07195 NC_022364.1 1505230 1505652 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heat-inducible protein complement(1505230..1505652) Escherichia coli LY180 16979112 YP_008564550.1 CDS LY180_07200 NC_022364.1 1505763 1505984 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1505763..1505984) Escherichia coli LY180 16979113 YP_008564551.1 CDS LY180_07205 NC_022364.1 1506136 1507530 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase complement(1506136..1507530) Escherichia coli LY180 16979114 YP_008564552.1 CDS LY180_07210 NC_022364.1 1507548 1509407 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA complement(1507548..1509407) Escherichia coli LY180 16979115 YP_008564553.1 CDS LY180_07215 NC_022364.1 1509947 1510264 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1509947..1510264) Escherichia coli LY180 16979116 YP_008564554.1 CDS LY180_07220 NC_022364.1 1510418 1510840 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1510418..1510840) Escherichia coli LY180 16979117 YP_008564555.1 CDS LY180_07225 NC_022364.1 1511048 1513687 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1511048..1513687 Escherichia coli LY180 16979118 YP_008564556.1 CDS LY180_07230 NC_022364.1 1513684 1513869 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1513684..1513869 Escherichia coli LY180 16979119 YP_008564557.1 CDS LY180_07235 NC_022364.1 1513877 1514203 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1513877..1514203 Escherichia coli LY180 16979120 YP_008564558.1 CDS LY180_07240 NC_022364.1 1514375 1515280 R activator of genes involved in phenylacetic acid catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1514375..1515280) Escherichia coli LY180 16979121 YP_008564559.1 CDS LY180_07245 NC_022364.1 1515516 1517015 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 1515516..1517015 Escherichia coli LY180 16979122 YP_008564560.1 CDS tynA NC_022364.1 1517073 1519346 R catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyramine oxidase complement(1517073..1519346) Escherichia coli LY180 16979123 YP_008564561.1 CDS LY180_07255 NC_022364.1 1519594 1521639 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase complement(1519594..1521639) Escherichia coli LY180 16979124 YP_008564562.1 CDS paaA NC_022364.1 1521924 1522853 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phenylacetate-CoA oxygenase subunit PaaA 1521924..1522853 Escherichia coli LY180 16979125 YP_008564563.1 CDS paaB NC_022364.1 1522865 1523152 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetate-CoA oxygenase subunit PaaB 1522865..1523152 Escherichia coli LY180 16979126 YP_008564564.1 CDS LY180_07270 NC_022364.1 1523161 1523907 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetic acid degradation protein 1523161..1523907 Escherichia coli LY180 16979127 YP_008564565.1 CDS LY180_07275 NC_022364.1 1523922 1524419 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetic acid degradation protein 1523922..1524419 Escherichia coli LY180 16979128 YP_008564566.1 CDS LY180_07280 NC_022364.1 1524427 1525497 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetic acid degradation protein 1524427..1525497 Escherichia coli LY180 16979129 YP_008564567.1 CDS LY180_07285 NC_022364.1 1525494 1526261 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-dehydroadipyl-CoA hydratase 1525494..1526261 Escherichia coli LY180 16979130 YP_008564568.1 CDS LY180_07290 NC_022364.1 1526261 1527049 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; enoyl-CoA hydratase 1526261..1527049 Escherichia coli LY180 16979131 YP_008564569.1 CDS LY180_07295 NC_022364.1 1527051 1528478 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-hydroxyacyl-CoA dehydrogenase 1527051..1528478 Escherichia coli LY180 16979132 YP_008564570.1 CDS LY180_07300 NC_022364.1 1528468 1528890 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA thioesterase 1528468..1528890 Escherichia coli LY180 16979133 YP_008564571.1 CDS fadA NC_022364.1 1528890 1530095 D FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase 1528890..1530095 Escherichia coli LY180 16979134 YP_008564572.1 CDS LY180_07310 NC_022364.1 1530122 1531435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetate-CoA ligase 1530122..1531435 Escherichia coli LY180 16979135 YP_008564573.1 CDS LY180_07315 NC_022364.1 1531536 1532486 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylacetic acid degradation protein 1531536..1532486 Escherichia coli LY180 16979136 YP_008564574.1 CDS LY180_07320 NC_022364.1 1532468 1533058 D involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; carnitine operon protein CaiE 1532468..1533058 Escherichia coli LY180 16979137 YP_008564575.1 CDS LY180_07325 NC_022364.1 1533289 1534149 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 1533289..1534149 Escherichia coli LY180 16979138 YP_008564576.1 CDS LY180_07330 NC_022364.1 1534213 1536519 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1534213..1536519 Escherichia coli LY180 16979139 YP_008564577.1 CDS LY180_07335 NC_022364.1 1536690 1537295 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1536690..1537295 Escherichia coli LY180 16979140 YP_008564578.1 CDS LY180_07340 NC_022364.1 1537295 1538191 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1537295..1538191 Escherichia coli LY180 16979141 YP_008564579.1 CDS LY180_07345 NC_022364.1 1538207 1539964 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1538207..1539964 Escherichia coli LY180 16979142 YP_008564580.1 CDS LY180_07350 NC_022364.1 1539954 1541270 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1539954..1541270 Escherichia coli LY180 16979143 YP_008564581.1 CDS LY180_07355 NC_022364.1 1541321 1541926 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; azoreductase complement(1541321..1541926) Escherichia coli LY180 16979144 YP_008564582.1 CDS LY180_07360 NC_022364.1 1542127 1546029 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 1542127..1546029 Escherichia coli LY180 16979145 YP_008564583.1 CDS LY180_07365 NC_022364.1 1546301 1547101 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1546301..1547101 Escherichia coli LY180 16979146 YP_008564584.1 CDS LY180_07370 NC_022364.1 1547298 1548737 D NAD-linked; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase 1547298..1548737 Escherichia coli LY180 16979147 YP_008564585.1 CDS LY180_07375 NC_022364.1 1548779 1549780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(1548779..1549780) Escherichia coli LY180 16979148 YP_008564586.1 CDS LY180_07380 NC_022364.1 1549969 1550499 D B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 1549969..1550499 Escherichia coli LY180 16979149 YP_008564587.1 CDS LY180_07385 NC_022364.1 1550744 1550917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1550744..1550917 Escherichia coli LY180 16979150 YP_008564588.1 CDS LY180_07390 NC_022364.1 1550989 1551138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein hokC complement(1550989..1551138) Escherichia coli LY180 16979151 YP_008564589.1 CDS LY180_07395 NC_022364.1 1551537 1553177 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 1551537..1553177 Escherichia coli LY180 16979152 YP_008564590.1 CDS LY180_07400 NC_022364.1 1553215 1554138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1553215..1554138) Escherichia coli LY180 16979153 YP_008564591.1 CDS LY180_07405 NC_022364.1 1554355 1555698 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1554355..1555698 Escherichia coli LY180 16979154 YP_008564592.1 CDS mdoD NC_022364.1 1555923 1557578 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucan biosynthesis protein D 1555923..1557578 Escherichia coli LY180 16979155 YP_008564593.1 CDS LY180_07415 NC_022364.1 1557718 1557942 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1557718..1557942 Escherichia coli LY180 16979156 YP_008564594.1 CDS LY180_07420 NC_022364.1 1558005 1558541 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal-protein-L7/L12-serine acetyltransferase 1558005..1558541 Escherichia coli LY180 16979157 YP_008564595.1 CDS LY180_07425 NC_022364.1 1558536 1559516 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(1558536..1559516) Escherichia coli LY180 16979158 YP_008564596.1 CDS LY180_07430 NC_022364.1 1559640 1560632 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehA 1559640..1560632 Escherichia coli LY180 16979159 YP_008564597.1 CDS LY180_07435 NC_022364.1 1560629 1561222 D with TehA confers resistance to tellurite; Derived by automated computational analysis using gene prediction method: Protein Homology.; tellurite resistance protein TehB 1560629..1561222 Escherichia coli LY180 16979160 YP_008564598.1 CDS LY180_07440 NC_022364.1 1561525 1562193 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1561525..1562193 Escherichia coli LY180 16979161 YP_008564599.1 CDS LY180_07445 NC_022364.1 1562720 1563928 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS609 1562720..1563928 Escherichia coli LY180 16979162 YP_008564600.1 CDS LY180_07450 NC_022364.1 1563968 1565143 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1563968..1565143) Escherichia coli LY180 16979163 YP_008564601.1 CDS LY180_07455 NC_022364.1 1565235 1565771 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 1565235..1565771 Escherichia coli LY180 16979164 YP_008564602.1 CDS LY180_07460 NC_022364.1 1565844 1567805 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1565844..1567805 Escherichia coli LY180 16979165 YP_008564603.1 CDS LY180_07465 NC_022364.1 1567897 1568127 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1567897..1568127) Escherichia coli LY180 16979166 YP_008564604.1 CDS LY180_07470 NC_022364.1 1568550 1568987 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 1568550..1568987 Escherichia coli LY180 16979167 YP_008564605.1 CDS LY180_07475 NC_022364.1 1569066 1570472 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1569066..1570472 Escherichia coli LY180 16979168 YP_008564606.1 CDS LY180_07480 NC_022364.1 1570717 1571862 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter substrate-binding protein 1570717..1571862 Escherichia coli LY180 16979169 YP_008564607.1 CDS LY180_07485 NC_022364.1 1571880 1572893 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polyamine ABC transporter ATP-binding protein 1571880..1572893 Escherichia coli LY180 16979170 YP_008564608.1 CDS LY180_07490 NC_022364.1 1572894 1573835 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter permease 1572894..1573835 Escherichia coli LY180 16979171 YP_008564609.1 CDS LY180_07495 NC_022364.1 1573825 1574619 D Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine/putrescine ABC transporter permease 1573825..1574619 Escherichia coli LY180 16979172 YP_008564610.1 CDS LY180_07500 NC_022364.1 1574641 1576065 D catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyraldehyde dehydrogenase 1574641..1576065 Escherichia coli LY180 16979173 YP_008564611.1 CDS LY180_07505 NC_022364.1 1576377 1576625 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1576377..1576625 Escherichia coli LY180 16979174 YP_008564612.1 CDS LY180_07510 NC_022364.1 1576711 1576944 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1576711..1576944 Escherichia coli LY180 16979175 YP_008564613.1 CDS LY180_07515 NC_022364.1 1576945 1577394 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1576945..1577394) Escherichia coli LY180 16979176 YP_008564614.1 CDS LY180_07520 NC_022364.1 1577391 1577909 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(1577391..1577909) Escherichia coli LY180 16979177 YP_008564615.1 CDS LY180_07525 NC_022364.1 1578090 1579127 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADP-dependent oxidoreductase 1578090..1579127 Escherichia coli LY180 16979178 YP_008564616.1 CDS LY180_07530 NC_022364.1 1579325 1579990 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1579325..1579990 Escherichia coli LY180 16979179 YP_008564617.1 CDS LY180_07535 NC_022364.1 1580026 1582128 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TonB-dependent receptor complement(1580026..1582128) Escherichia coli LY180 16979180 YP_008564618.1 CDS LY180_07540 NC_022364.1 1582370 1583431 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1582370..1583431 Escherichia coli LY180 16979181 YP_008564619.1 CDS LY180_07545 NC_022364.1 1583546 1585045 R involved in the transporte of L-asparagine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparagine permease complement(1583546..1585045) Escherichia coli LY180 16979182 YP_008564620.1 CDS LY180_07550 NC_022364.1 1585311 1585928 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1585311..1585928 Escherichia coli LY180 16979183 YP_008564621.1 CDS LY180_07555 NC_022364.1 1586004 1586216 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1586004..1586216 Escherichia coli LY180 16979184 YP_008564622.1 CDS LY180_07560 NC_022364.1 1587033 1589141 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type IV secretion protein Rhs 1587033..1589141 Escherichia coli LY180 16979185 YP_008564623.1 CDS LY180_07565 NC_022364.1 1589209 1593417 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1589209..1593417 Escherichia coli LY180 16979186 YP_008564624.1 CDS LY180_07570 NC_022364.1 1593429 1593824 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 1593429..1593824 Escherichia coli LY180 16979187 YP_008564625.1 CDS LY180_07575 NC_022364.1 1594332 1595240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1594332..1595240 Escherichia coli LY180 16979188 YP_008564626.1 CDS LY180_07580 NC_022364.1 1595339 1595566 D 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-oxalocrotonate tautomerase 1595339..1595566 Escherichia coli LY180 16979189 YP_008564627.1 CDS LY180_07585 NC_022364.1 1595570 1596139 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1595570..1596139) Escherichia coli LY180 16979190 YP_008564628.1 CDS LY180_07590 NC_022364.1 1596312 1597157 D catalyzes the addition of the acetyl moity of acetyl-CoA to an N-hydroxy-arylamine to form an N-acetoxyarylamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-hydroxyarylamine O-acetyltransferase 1596312..1597157 Escherichia coli LY180 16979191 YP_008564629.1 CDS LY180_07595 NC_022364.1 1597253 1598146 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1597253..1598146) Escherichia coli LY180 16979192 YP_008564630.1 CDS narI NC_022364.1 1598225 1598905 R with NarGJH catalyzes the reduction of nitrate; the gamma subunit localizes NarGHI to the membrane; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit gamma complement(1598225..1598905) Escherichia coli LY180 16979193 YP_008564631.1 CDS LY180_07605 NC_022364.1 1598902 1599597 R delta subunit of nitrate reductase 1; chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase molybdenum cofactor assembly chaperone NarJ complement(1598902..1599597) Escherichia coli LY180 16979194 YP_008564632.1 CDS narH NC_022364.1 1599597 1601141 R with NarGJI catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit beta complement(1599597..1601141) Escherichia coli LY180 16979195 YP_008564633.1 CDS narZ NC_022364.1 1601138 1604878 R with NarYV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase A subunit alpha complement(1601138..1604878) Escherichia coli LY180 16979196 YP_008564634.1 CDS LY180_07620 NC_022364.1 1604960 1606348 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite extrusion protein 2 complement(1604960..1606348) Escherichia coli LY180 16979197 YP_008564635.1 CDS LY180_07625 NC_022364.1 1606672 1607967 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1606672..1607967) Escherichia coli LY180 16979198 YP_008564636.1 CDS LY180_07630 NC_022364.1 1608026 1608316 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1608026..1608316) Escherichia coli LY180 16979199 YP_008564637.1 CDS LY180_07635 NC_022364.1 1608575 1609456 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid exporter complement(1608575..1609456) Escherichia coli LY180 16979200 YP_008564638.1 CDS LY180_07640 NC_022364.1 1609688 1610275 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein 1609688..1610275 Escherichia coli LY180 16979201 YP_008564639.1 CDS LY180_07645 NC_022364.1 1610324 1612735 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha 1610324..1612735 Escherichia coli LY180 16979202 YP_008564640.1 CDS LY180_07650 NC_022364.1 1612748 1613632 D beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta 1612748..1613632 Escherichia coli LY180 16979203 YP_008564641.1 CDS LY180_07655 NC_022364.1 1613625 1614278 D cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma 1613625..1614278 Escherichia coli LY180 16979204 YP_008564642.1 CDS LY180_07660 NC_022364.1 1614329 1614613 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(1614329..1614613) Escherichia coli LY180 16979205 YP_008564643.1 CDS adhP NC_022364.1 1614760 1615770 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde reductase complement(1614760..1615770) Escherichia coli LY180 16979206 YP_008564644.1 CDS LY180_07670 NC_022364.1 1615904 1617601 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase complement(1615904..1617601) Escherichia coli LY180 16979207 YP_008564645.1 CDS rpsV NC_022364.1 1617758 1617895 R protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S22 complement(1617758..1617895) Escherichia coli LY180 16979208 YP_008564646.1 CDS LY180_07680 NC_022364.1 1617997 1618212 R Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm-dependent modulation protein complement(1617997..1618212) Escherichia coli LY180 16979209 YP_008564647.1 CDS LY180_07685 NC_022364.1 1618558 1618989 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peroxiredoxin 1618558..1618989 Escherichia coli LY180 16979210 YP_008564648.1 CDS LY180_07695 NC_022364.1 1620947 1621843 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C550 complement(1620947..1621843) Escherichia coli LY180 16979212 YP_008564649.1 CDS LY180_07700 NC_022364.1 1621840 1622862 R transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(1621840..1622862) Escherichia coli LY180 16979213 YP_008564650.1 CDS LY180_07705 NC_022364.1 1622864 1624414 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(1622864..1624414) Escherichia coli LY180 16979214 YP_008564651.1 CDS LY180_07715 NC_022364.1 1625267 1627690 R heme-regulated phosphodiesterase with phosphodiesterase activity with cGMP; cold- and stationary phase-induced bioflim regulator; oxygen sensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate phosphodiesterase complement(1625267..1627690) Escherichia coli LY180 16979216 YP_008564652.1 CDS LY180_07720 NC_022364.1 1627691 1629073 R Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(1627691..1629073) Escherichia coli LY180 16979217 YP_008564653.1 CDS LY180_07725 NC_022364.1 1629445 1630764 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1629445..1630764) Escherichia coli LY180 16979218 YP_008564654.1 CDS LY180_07730 NC_022364.1 1630895 1632430 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(1630895..1632430) Escherichia coli LY180 16979219 YP_008564655.1 CDS LY180_07735 NC_022364.1 1632586 1633986 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate decarboxylase complement(1632586..1633986) Escherichia coli LY180 16979220 YP_008564656.1 CDS LY180_07740 NC_022364.1 1634348 1637143 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc protease complement(1634348..1637143) Escherichia coli LY180 16979221 YP_008564657.1 CDS LY180_07745 NC_022364.1 1637188 1639560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1637188..1639560) Escherichia coli LY180 16979222 YP_008564658.1 CDS LY180_07750 NC_022364.1 1639598 1641283 R Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(1639598..1641283) Escherichia coli LY180 16979223 YP_008564659.1 CDS LY180_07755 NC_022364.1 1641574 1642731 R Derived by automated computational analysis using gene prediction method: Protein Homology.; radical SAM protein complement(1641574..1642731) Escherichia coli LY180 16979224 YP_008564660.1 CDS LY180_07760 NC_022364.1 1642783 1643340 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfatase complement(1642783..1643340) Escherichia coli LY180 16979225 YP_008564661.1 CDS LY180_07765 NC_022364.1 1643643 1644206 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase 1643643..1644206 Escherichia coli LY180 16979226 YP_008564662.1 CDS LY180_07770 NC_022364.1 1645466 1646341 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfatase complement(1645466..1646341) Escherichia coli LY180 16979227 YP_008564663.1 CDS LY180_07775 NC_022364.1 1646743 1647504 R regulates the cellular response to acid resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1646743..1647504) Escherichia coli LY180 16979228 YP_008564664.1 CDS LY180_07780 NC_022364.1 1647579 1647776 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Two-protein-system connector protein SafA complement(1647579..1647776) Escherichia coli LY180 16979229 YP_008564665.1 CDS LY180_07785 NC_022364.1 1648024 1650303 R in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell; involved with increased resistance to low pH; member of the prokaryotic molybdopterin-containing oxidoreductase family; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1648024..1650303) Escherichia coli LY180 16979230 YP_008564666.1 CDS LY180_07790 NC_022364.1 1650637 1651551 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimH complement(1650637..1651551) Escherichia coli LY180 16979231 YP_008564667.1 CDS LY180_07795 NC_022364.1 1651611 1652114 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimG complement(1651611..1652114) Escherichia coli LY180 16979232 YP_008564668.1 CDS LY180_07800 NC_022364.1 1652127 1652657 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein ydeS complement(1652127..1652657) Escherichia coli LY180 16979233 YP_008564669.1 CDS LY180_07805 NC_022364.1 1652671 1655322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD complement(1652671..1655322) Escherichia coli LY180 16979234 YP_008564670.1 CDS LY180_07810 NC_022364.1 1655364 1656074 R involved in type 1 fimbriae biosynthesis, interacts with FimH; Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial chaperone protein FimC complement(1655364..1656074) Escherichia coli LY180 16979235 YP_008564671.1 CDS fimA NC_022364.1 1656435 1656998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A complement(1656435..1656998) Escherichia coli LY180 16979236 YP_008564672.1 CDS LY180_07820 NC_022364.1 1657350 1657571 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1657350..1657571) Escherichia coli LY180 16979237 YP_008564673.1 CDS LY180_07825 NC_022364.1 1657950 1659272 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1657950..1659272) Escherichia coli LY180 16979238 YP_008564674.1 CDS LY180_07830 NC_022364.1 1659272 1659538 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(1659272..1659538) Escherichia coli LY180 16979239 YP_008564675.1 CDS LY180_07835 NC_022364.1 1659747 1665029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1659747..1665029) Escherichia coli LY180 16979240 YP_008564676.1 CDS LY180_07840 NC_022364.1 1665279 1666487 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1665279..1666487) Escherichia coli LY180 16979241 YP_008564677.1 CDS LY180_07845 NC_022364.1 1666669 1668342 R Derived by automated computational analysis using gene prediction method: Protein Homology.; porin complement(1666669..1668342) Escherichia coli LY180 16979242 YP_008564678.1 CDS LY180_07850 NC_022364.1 1668398 1668709 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIA complement(1668398..1668709) Escherichia coli LY180 16979243 YP_008564679.1 CDS LY180_07855 NC_022364.1 1668737 1670059 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; PTS cellobiose transporter subunit IIC complement(1668737..1670059) Escherichia coli LY180 16979244 YP_008564680.1 CDS LY180_07860 NC_022364.1 1670174 1670485 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIB complement(1670174..1670485) Escherichia coli LY180 16979245 YP_008564681.1 CDS LY180_07865 NC_022364.1 1670684 1671382 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator 1670684..1671382 Escherichia coli LY180 16979246 YP_008564682.1 CDS LY180_07870 NC_022364.1 1671427 1672326 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetylserine/cysteine export protein complement(1671427..1672326) Escherichia coli LY180 16979247 YP_008564683.1 CDS LY180_07875 NC_022364.1 1672521 1673708 D YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1672521..1673708 Escherichia coli LY180 16979248 YP_008564684.1 CDS LY180_07880 NC_022364.1 1673835 1673930 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 1673835..1673930 Escherichia coli LY180 16979249 YP_008564685.1 CDS LY180_07885 NC_022364.1 1674149 1675039 R required for pgaD induction; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(1674149..1675039) Escherichia coli LY180 16979250 YP_008564686.1 CDS LY180_07890 NC_022364.1 1675294 1675686 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1675294..1675686) Escherichia coli LY180 16979251 YP_008564687.1 CDS LY180_07895 NC_022364.1 1675962 1676480 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1675962..1676480 Escherichia coli LY180 16979252 YP_008564688.1 CDS LY180_07900 NC_022364.1 1676525 1678570 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dipeptidyl carboxypeptidase II complement(1676525..1678570) Escherichia coli LY180 16979253 YP_008564689.1 CDS LY180_07905 NC_022364.1 1678707 1679453 D NADP(+)-dependent; catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde, catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; malonic semialdehyde reductase 1678707..1679453 Escherichia coli LY180 16979254 YP_008564690.1 CDS LY180_07910 NC_022364.1 1679542 1680228 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 1679542..1680228 Escherichia coli LY180 16979255 YP_008564691.1 CDS LY180_07915 NC_022364.1 1680406 1680609 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1680406..1680609 Escherichia coli LY180 16979256 YP_008564692.1 CDS LY180_07920 NC_022364.1 1680645 1682105 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase complement(1680645..1682105) Escherichia coli LY180 16979257 YP_008564693.1 CDS LY180_07925 NC_022364.1 1682194 1683477 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1682194..1683477) Escherichia coli LY180 16979258 YP_008564694.1 CDS LY180_07930 NC_022364.1 1684264 1684497 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1684264..1684497 Escherichia coli LY180 16979259 YP_008564695.1 CDS LY180_07935 NC_022364.1 1684962 1686170 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1684962..1686170) Escherichia coli LY180 16979260 YP_008564696.1 CDS LY180_07940 NC_022364.1 1686317 1686742 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase 1686317..1686742 Escherichia coli LY180 16979261 YP_008564697.1 CDS LY180_07945 NC_022364.1 1686840 1687403 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail assembly protein complement(1686840..1687403) Escherichia coli LY180 16979262 YP_008564698.1 CDS LY180_07950 NC_022364.1 1687415 1690489 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1687415..1690489) Escherichia coli LY180 16979263 YP_008564699.1 CDS LY180_07955 NC_022364.1 1690554 1691153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1690554..1691153) Escherichia coli LY180 16979264 YP_008564700.1 CDS LY180_07960 NC_022364.1 1691224 1694637 R Derived by automated computational analysis using gene prediction method: Protein Homology.; host specificity protein J complement(1691224..1694637) Escherichia coli LY180 16979265 YP_008564701.1 CDS LY180_07965 NC_022364.1 1694698 1695270 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1694698..1695270) Escherichia coli LY180 16979266 YP_008564702.1 CDS LY180_07970 NC_022364.1 1695267 1696010 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1695267..1696010) Escherichia coli LY180 16979267 YP_008564703.1 CDS LY180_07975 NC_022364.1 1696016 1696714 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1696016..1696714) Escherichia coli LY180 16979268 YP_008564704.1 CDS LY180_07980 NC_022364.1 1696714 1697043 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1696714..1697043) Escherichia coli LY180 16979269 YP_008564705.1 CDS LY180_07985 NC_022364.1 1697040 1699601 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1697040..1699601) Escherichia coli LY180 16979270 YP_008564706.1 CDS LY180_07990 NC_022364.1 1699594 1700028 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1699594..1700028) Escherichia coli LY180 16979271 YP_008564707.1 CDS LY180_07995 NC_022364.1 1700010 1700432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1700010..1700432) Escherichia coli LY180 16979272 YP_008564708.1 CDS LY180_08000 NC_022364.1 1700448 1701206 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1700448..1701206) Escherichia coli LY180 16979273 YP_008564709.1 CDS LY180_08005 NC_022364.1 1701196 1701591 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1701196..1701591) Escherichia coli LY180 16979274 YP_008564710.1 CDS LY180_08010 NC_022364.1 1701588 1702166 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(1701588..1702166) Escherichia coli LY180 16979275 YP_008564711.1 CDS LY180_08015 NC_022364.1 1702178 1702531 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail attachment protein complement(1702178..1702531) Escherichia coli LY180 16979276 YP_008564712.1 CDS LY180_08020 NC_022364.1 1702543 1702941 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-packaging protein FI complement(1702543..1702941) Escherichia coli LY180 16979277 YP_008564713.1 CDS LY180_08025 NC_022364.1 1702983 1704008 R Derived by automated computational analysis using gene prediction method: Protein Homology.; head protein complement(1702983..1704008) Escherichia coli LY180 16979278 YP_008564714.1 CDS LY180_08030 NC_022364.1 1704406 1705725 R Derived by automated computational analysis using gene prediction method: Protein Homology.; capsid assembly protein complement(1704406..1705725) Escherichia coli LY180 16979279 YP_008564715.1 CDS LY180_08035 NC_022364.1 1705706 1707307 R Derived by automated computational analysis using gene prediction method: Protein Homology.; plasmid partitioning protein ParB complement(1705706..1707307) Escherichia coli LY180 16979280 YP_008564716.1 CDS LY180_08040 NC_022364.1 1707304 1707510 R Derived by automated computational analysis using gene prediction method: Protein Homology.; head-tail joining protein complement(1707304..1707510) Escherichia coli LY180 16979281 YP_008564717.1 CDS LY180_08045 NC_022364.1 1707507 1709432 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(1707507..1709432) Escherichia coli LY180 16979282 YP_008564718.1 CDS LY180_08050 NC_022364.1 1709407 1709952 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein convertase complement(1709407..1709952) Escherichia coli LY180 16979283 YP_008564719.1 CDS LY180_08055 NC_022364.1 1710632 1711042 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1710632..1711042 Escherichia coli LY180 16979284 YP_008564720.1 CDS LY180_08060 NC_022364.1 1711194 1711367 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gns complement(1711194..1711367) Escherichia coli LY180 16979285 YP_008564721.1 CDS LY180_08065 NC_022364.1 1711539 1711769 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1711539..1711769) Escherichia coli LY180 16979286 YP_008564722.1 CDS LY180_08070 NC_022364.1 1712041 1712253 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(1712041..1712253) Escherichia coli LY180 16979287 YP_008564723.1 CDS LY180_08075 NC_022364.1 1712616 1713113 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1712616..1713113) Escherichia coli LY180 16979288 YP_008564724.1 CDS LY180_08080 NC_022364.1 1713110 1713643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(1713110..1713643) Escherichia coli LY180 16979289 YP_008564725.1 CDS LY180_08085 NC_022364.1 1713640 1713951 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1713640..1713951) Escherichia coli LY180 16979290 YP_008564726.1 CDS LY180_08090 NC_022364.1 1713956 1714171 R Derived by automated computational analysis using gene prediction method: Protein Homology.; holin complement(1713956..1714171) Escherichia coli LY180 16979291 YP_008564727.1 CDS LY180_08095 NC_022364.1 1714925 1715140 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein complement(1714925..1715140) Escherichia coli LY180 16979292 YP_008564728.1 CDS LY180_08100 NC_022364.1 1715441 1715653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 1715441..1715653 Escherichia coli LY180 16979293 YP_008564729.1 CDS LY180_08105 NC_022364.1 1716075 1716827 R Derived by automated computational analysis using gene prediction method: Protein Homology.; antitermination protein complement(1716075..1716827) Escherichia coli LY180 16979294 YP_008564730.1 CDS LY180_08110 NC_022364.1 1716841 1717863 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1716841..1717863) Escherichia coli LY180 16979295 YP_008564731.1 CDS LY180_08115 NC_022364.1 1718237 1718488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1718237..1718488) Escherichia coli LY180 16979296 YP_008564732.1 CDS LY180_08120 NC_022364.1 1718705 1718860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein hokC complement(1718705..1718860) Escherichia coli LY180 16979297 YP_008564733.1 CDS LY180_08125 NC_022364.1 1718932 1719219 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RelE toxin complement(1718932..1719219) Escherichia coli LY180 16979298 YP_008564734.1 CDS LY180_08130 NC_022364.1 1719219 1719458 R Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional antitoxin/transcriptional repressor RelB complement(1719219..1719458) Escherichia coli LY180 16979299 YP_008564735.1 CDS LY180_08135 NC_022364.1 1720760 1722073 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(1720760..1722073) Escherichia coli LY180 16979300 YP_008564736.1 CDS LY180_08140 NC_022364.1 1722408 1722587 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(1722408..1722587) Escherichia coli LY180 16979301 YP_008564737.1 CDS LY180_08145 NC_022364.1 1723019 1723129 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1723019..1723129) Escherichia coli LY180 16979302 YP_008564738.1 CDS LY180_08155 NC_022364.1 1723367 1723477 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1723367..1723477) Escherichia coli LY180 16979304 YP_008564739.1 CDS LY180_08160 NC_022364.1 1724093 1724515 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1724093..1724515) Escherichia coli LY180 16982296 YP_008564740.1 CDS LY180_08165 NC_022364.1 1724556 1725521 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1724556..1725521) Escherichia coli LY180 16979306 YP_008564741.1 CDS LY180_08170 NC_022364.1 1725502 1726023 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1725502..1726023) Escherichia coli LY180 16979307 YP_008564742.1 CDS LY180_08175 NC_022364.1 1726007 1726237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1726007..1726237) Escherichia coli LY180 16979308 YP_008564743.1 CDS LY180_08180 NC_022364.1 1726321 1726728 D The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1726321..1726728 Escherichia coli LY180 16979309 YP_008564744.1 CDS LY180_08185 NC_022364.1 1726895 1727050 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1726895..1727050 Escherichia coli LY180 16979310 YP_008564745.1 CDS LY180_08190 NC_022364.1 1727052 1727180 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1727052..1727180 Escherichia coli LY180 16979311 YP_008564746.1 CDS LY180_08195 NC_022364.1 1727210 1727428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1727210..1727428 Escherichia coli LY180 16979312 YP_008564747.1 CDS LY180_08200 NC_022364.1 1727996 1728184 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division inhibition protein DicB 1727996..1728184 Escherichia coli LY180 16979313 YP_008564748.1 CDS LY180_08205 NC_022364.1 1728181 1728372 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1728181..1728372 Escherichia coli LY180 16979314 YP_008564749.1 CDS LY180_08210 NC_022364.1 1728465 1730942 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1728465..1730942 Escherichia coli LY180 16979315 YP_008564750.1 CDS LY180_08215 NC_022364.1 1731015 1731266 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1731015..1731266 Escherichia coli LY180 16979316 YP_008564751.1 CDS LY180_08220 NC_022364.1 1731286 1732581 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 1731286..1732581 Escherichia coli LY180 16979317 YP_008564752.1 CDS LY180_08225 NC_022364.1 1732751 1733959 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1732751..1733959 Escherichia coli LY180 16979318 YP_008564753.1 CDS LY180_08230 NC_022364.1 1734107 1735126 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase complement(1734107..1735126) Escherichia coli LY180 16979319 YP_008564754.1 CDS LY180_08235 NC_022364.1 1735138 1736352 R starvation-sensing protein; maybe involved in homoserine lactone degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional D-altronate/D-mannonate dehydratase complement(1735138..1736352) Escherichia coli LY180 16979320 YP_008564755.1 CDS LY180_08240 NC_022364.1 1736558 1736884 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1736558..1736884) Escherichia coli LY180 16979321 YP_008564756.1 CDS LY180_08245 NC_022364.1 1737019 1737360 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1737019..1737360 Escherichia coli LY180 16979322 YP_008564757.1 CDS LY180_08250 NC_022364.1 1737395 1737955 D catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; spermidine N1-acetyltransferase 1737395..1737955 Escherichia coli LY180 16979323 YP_008564758.1 CDS LY180_08255 NC_022364.1 1737958 1738704 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(1737958..1738704) Escherichia coli LY180 16979324 YP_008564759.1 CDS LY180_08260 NC_022364.1 1738776 1739081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1738776..1739081 Escherichia coli LY180 16979325 YP_008564760.1 CDS LY180_08265 NC_022364.1 1739280 1741706 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1739280..1741706 Escherichia coli LY180 16979326 YP_008564761.1 CDS LY180_08270 NC_022364.1 1741764 1744190 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit A 1741764..1744190 Escherichia coli LY180 16979327 YP_008564762.1 CDS LY180_08275 NC_022364.1 1744201 1744818 D oxidoreductase, Fe-S subunit; terminal electron transfer protein for the reduction of DMSO; Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit B 1744201..1744818 Escherichia coli LY180 16979328 YP_008564763.1 CDS LY180_08280 NC_022364.1 1744820 1745674 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dimethyl sulfoxide reductase subunit H 1744820..1745674 Escherichia coli LY180 16979329 YP_008564764.1 CDS LY180_08285 NC_022364.1 1745717 1746331 D binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-argninine leader-binding protein DmsD 1745717..1746331 Escherichia coli LY180 16979330 YP_008564765.1 CDS LY180_08290 NC_022364.1 1746526 1747782 D Derived by automated computational analysis using gene prediction method: Protein Homology.; voltage-gated ClC-type chloride channel ClcB 1746526..1747782 Escherichia coli LY180 16979331 YP_008564766.1 CDS bioD NC_022364.1 1747735 1748430 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; Derived by automated computational analysis using gene prediction method: Protein Homology.; dithiobiotin synthetase complement(1747735..1748430) Escherichia coli LY180 16979332 YP_008564767.1 CDS LY180_08300 NC_022364.1 1748555 1749418 R mlc, controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems, regulates genes involved in the uptake of sugars; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1748555..1749418) Escherichia coli LY180 16979333 YP_008564768.1 CDS LY180_08305 NC_022364.1 1749421 1749924 R Derived by automated computational analysis using gene prediction method: Protein Homology.; insB complement(1749421..1749924) Escherichia coli LY180 16979334 YP_008564769.1 CDS LY180_08310 NC_022364.1 1750169 1750552 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; gdgsA complement(1750169..1750552) Escherichia coli LY180 16979335 YP_008564770.1 CDS LY180_08315 NC_022364.1 1750687 1751580 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1750687..1751580) Escherichia coli LY180 16979336 YP_008564771.1 CDS LY180_08320 NC_022364.1 1751687 1752940 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1751687..1752940 Escherichia coli LY180 16979337 YP_008564772.1 CDS LY180_08325 NC_022364.1 1753337 1753672 D required for growth and survival under moderately acid conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-shock protein 1753337..1753672 Escherichia coli LY180 16979338 YP_008564773.1 CDS LY180_08330 NC_022364.1 1753765 1753848 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1753765..1753848 Escherichia coli LY180 16979339 YP_008564774.1 CDS LY180_08335 NC_022364.1 1753948 1754769 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine protease 1753948..1754769 Escherichia coli LY180 16979340 YP_008564775.1 CDS LY180_08340 NC_022364.1 1754808 1755137 R with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1754808..1755137) Escherichia coli LY180 16979341 YP_008564776.1 CDS LY180_08345 NC_022364.1 1755124 1755489 R with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(1755124..1755489) Escherichia coli LY180 16979342 YP_008564777.1 CDS tqsA NC_022364.1 1755901 1756935 D transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 1755901..1756935 Escherichia coli LY180 16979343 YP_008564778.1 CDS pntB NC_022364.1 1756960 1758348 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridine nucleotide transhydrogenase complement(1756960..1758348) Escherichia coli LY180 16979344 YP_008564779.1 CDS pntA NC_022364.1 1758359 1759891 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P) transhydrogenase subunit alpha complement(1758359..1759891) Escherichia coli LY180 16979345 YP_008564780.1 CDS LY180_08365 NC_022364.1 1760415 1761359 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1760415..1761359 Escherichia coli LY180 16979346 YP_008564781.1 CDS LY180_08370 NC_022364.1 1761545 1762927 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:ornithine antiporter 1761545..1762927 Escherichia coli LY180 16979347 YP_008564782.1 CDS LY180_08375 NC_022364.1 1762964 1763686 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydromonapterin reductase 1762964..1763686 Escherichia coli LY180 16979348 YP_008564783.1 CDS LY180_08380 NC_022364.1 1763683 1764018 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1763683..1764018) Escherichia coli LY180 16979349 YP_008564784.1 CDS LY180_08385 NC_022364.1 1764147 1764866 D response regulator in two-component regulatory system with RstB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1764147..1764866 Escherichia coli LY180 16979350 YP_008564785.1 CDS LY180_08390 NC_022364.1 1764870 1766171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein RstB 1764870..1766171 Escherichia coli LY180 16979351 YP_008564786.1 CDS LY180_08395 NC_022364.1 1766247 1767176 D binds to DNA replication terminator sequences to prevent passage of replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 1766247..1767176 Escherichia coli LY180 16979352 YP_008564787.1 CDS fumC NC_022364.1 1767173 1768576 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(1767173..1768576) Escherichia coli LY180 16979353 YP_008564788.1 CDS LY180_08405 NC_022364.1 1768719 1770365 R catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(1768719..1770365) Escherichia coli LY180 16979354 YP_008564789.1 CDS LY180_08410 NC_022364.1 1770564 1771739 D catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-6-phosphate isomerase 1770564..1771739 Escherichia coli LY180 16979355 YP_008564790.1 CDS LY180_08415 NC_022364.1 1771840 1773348 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1771840..1773348 Escherichia coli LY180 16979356 YP_008564791.1 CDS LY180_08420 NC_022364.1 1773574 1774839 R Derived by automated computational analysis using gene prediction method: Protein Homology.; porin complement(1773574..1774839) Escherichia coli LY180 16979357 YP_008564792.1 CDS LY180_08425 NC_022364.1 1774878 1776251 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucuronide transporter complement(1774878..1776251) Escherichia coli LY180 16979358 YP_008564793.1 CDS LY180_08430 NC_022364.1 1776248 1778059 R Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucuronidase complement(1776248..1778059) Escherichia coli LY180 16979359 YP_008564794.1 CDS LY180_08435 NC_022364.1 1778447 1779037 R Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator complement(1778447..1779037) Escherichia coli LY180 16979360 YP_008564795.1 CDS LY180_08440 NC_022364.1 1779266 1780033 R Acts on the hydroxyl group at position 7 of the steroid frame; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-alpha-hydroxysteroid dehydrogenase complement(1779266..1780033) Escherichia coli LY180 16979361 YP_008564796.1 CDS LY180_08445 NC_022364.1 1780140 1781348 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1780140..1781348) Escherichia coli LY180 16979362 YP_008564797.1 CDS LY180_08450 NC_022364.1 1781483 1782511 R regulates malXY which are involved in maltose-glucose transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator complement(1781483..1782511) Escherichia coli LY180 16979363 YP_008564798.1 CDS LY180_08455 NC_022364.1 1782686 1784278 D phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS maltose transporter subunit IICB 1782686..1784278 Escherichia coli LY180 16979364 YP_008564799.1 CDS LY180_08460 NC_022364.1 1784288 1785460 D catalyzes the formation of homocysteine and pyruvate from cystathionine; also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase 1784288..1785460 Escherichia coli LY180 16979365 YP_008564800.1 CDS LY180_08465 NC_022364.1 1785564 1786565 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase 1785564..1786565 Escherichia coli LY180 16979366 YP_008564801.1 CDS LY180_08470 NC_022364.1 1786600 1787640 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1786600..1787640) Escherichia coli LY180 16979367 YP_008564802.1 CDS LY180_08475 NC_022364.1 1788281 1788496 D YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; oriC-binding nucleoid-associated protein 1788281..1788496 Escherichia coli LY180 16979368 YP_008564803.1 CDS LY180_08480 NC_022364.1 1788582 1789022 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1788582..1789022 Escherichia coli LY180 16979369 YP_008564804.1 CDS LY180_08485 NC_022364.1 1789099 1789680 D Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex RsxE subunit 1789099..1789680 Escherichia coli LY180 16979370 YP_008564805.1 CDS LY180_08490 NC_022364.1 1789680 1790258 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfD 1789680..1790258 Escherichia coli LY180 16979371 YP_008564806.1 CDS LY180_08495 NC_022364.1 1790251 1792473 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfC 1790251..1792473 Escherichia coli LY180 16979372 YP_008564807.1 CDS rnfD NC_022364.1 1792474 1793532 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter RnfG 1792474..1793532 Escherichia coli LY180 16979373 YP_008564808.1 CDS LY180_08505 NC_022364.1 1793536 1794156 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transport complex protein RsxA 1793536..1794156 Escherichia coli LY180 16979374 YP_008564809.1 CDS LY180_08510 NC_022364.1 1794160 1794855 D Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G 1794160..1794855 Escherichia coli LY180 16979375 YP_008564810.1 CDS LY180_08515 NC_022364.1 1794855 1795490 D DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease IV 1794855..1795490 Escherichia coli LY180 16979376 YP_008564811.1 CDS LY180_08520 NC_022364.1 1795618 1795818 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1795618..1795818 Escherichia coli LY180 16979377 YP_008564812.1 CDS tppB NC_022364.1 1796101 1797603 D mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease 1796101..1797603 Escherichia coli LY180 16979378 YP_008564813.1 CDS LY180_08530 NC_022364.1 1797709 1798314 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathionine S-transferase 1797709..1798314 Escherichia coli LY180 16979379 YP_008564814.1 CDS LY180_08535 NC_022364.1 1798358 1799218 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine kinase complement(1798358..1799218) Escherichia coli LY180 16979380 YP_008564815.1 CDS LY180_08540 NC_022364.1 1799280 1800554 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosyl-tRNA synthetase complement(1799280..1800554) Escherichia coli LY180 16979381 YP_008564816.1 CDS LY180_08545 NC_022364.1 1800683 1801339 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxamine 5'-phosphate oxidase complement(1800683..1801339) Escherichia coli LY180 16979382 YP_008564817.1 CDS LY180_08550 NC_022364.1 1801398 1801727 R MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme inhibitor complement(1801398..1801727) Escherichia coli LY180 16979383 YP_008564818.1 CDS anmK NC_022364.1 1801825 1802934 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; Derived by automated computational analysis using gene prediction method: Protein Homology.; anhydro-N-acetylmuramic acid kinase complement(1801825..1802934) Escherichia coli LY180 16979384 YP_008564819.1 CDS LY180_08560 NC_022364.1 1803208 1803675 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein pcp 1803208..1803675 Escherichia coli LY180 16979385 YP_008564820.1 CDS LY180_08565 NC_022364.1 1803722 1804162 R Transcription regulator that can both activate or repress expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; MarR family transcriptional regulator complement(1803722..1804162) Escherichia coli LY180 16979386 YP_008564821.1 CDS LY180_08570 NC_022364.1 1804357 1804593 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1804357..1804593 Escherichia coli LY180 16979387 YP_008564822.1 CDS LY180_08575 NC_022364.1 1804596 1805453 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1804596..1805453 Escherichia coli LY180 16979388 YP_008564823.1 CDS LY180_08580 NC_022364.1 1805453 1807465 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fusaric acid resistance protein 1805453..1807465 Escherichia coli LY180 16979389 YP_008564824.1 CDS LY180_08585 NC_022364.1 1807466 1808002 R SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase complement(1807466..1808002) Escherichia coli LY180 16979390 YP_008564825.1 CDS LY180_08590 NC_022364.1 1808068 1808964 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1808068..1808964) Escherichia coli LY180 16979391 YP_008564826.1 CDS LY180_08595 NC_022364.1 1809013 1809390 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1809013..1809390) Escherichia coli LY180 16979392 YP_008564827.1 CDS LY180_08600 NC_022364.1 1809439 1809954 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 1809439..1809954 Escherichia coli LY180 16979393 YP_008564828.1 CDS LY180_08605 NC_022364.1 1809991 1811088 D FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-ethylmaleimide reductase 1809991..1811088 Escherichia coli LY180 16979394 YP_008564829.1 CDS LY180_08610 NC_022364.1 1811169 1811576 D Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyoxalase I 1811169..1811576 Escherichia coli LY180 16979395 YP_008564830.1 CDS LY180_08615 NC_022364.1 1811679 1812326 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease T 1811679..1812326 Escherichia coli LY180 16979396 YP_008564831.1 CDS LY180_08620 NC_022364.1 1817086 1817433 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(1817086..1817433) Escherichia coli LY180 16982286 YP_008564832.1 CDS LY180_08625 NC_022364.1 1817768 1818583 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 1817768..1818583 Escherichia coli LY180 16979398 YP_008564833.1 CDS LY180_08630 NC_022364.1 1818711 1819292 D SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 1818711..1819292 Escherichia coli LY180 16979399 YP_008564834.1 CDS LY180_08635 NC_022364.1 1819527 1820696 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(1819527..1820696) Escherichia coli LY180 16979400 YP_008564835.1 CDS LY180_08640 NC_022364.1 1820862 1820951 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1820862..1820951) Escherichia coli LY180 16979401 YP_008564836.1 CDS LY180_08645 NC_022364.1 1821250 1822275 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 1821250..1822275 Escherichia coli LY180 16979402 YP_008564837.1 CDS LY180_08650 NC_022364.1 1822272 1823204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(1822272..1823204) Escherichia coli LY180 16979403 YP_008564838.1 CDS LY180_08655 NC_022364.1 1823317 1824528 D uncharacterized member of the major facilitator superfamily (MFS); Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1823317..1824528 Escherichia coli LY180 16979404 YP_008564839.1 CDS LY180_08660 NC_022364.1 1824819 1825967 D catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclopropane fatty acyl phospholipid synthase 1824819..1825967 Escherichia coli LY180 16979405 YP_008564840.1 CDS LY180_08665 NC_022364.1 1826007 1826648 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; Derived by automated computational analysis using gene prediction method: Protein Homology.; riboflavin synthase subunit alpha complement(1826007..1826648) Escherichia coli LY180 16979406 YP_008564841.1 CDS LY180_08670 NC_022364.1 1826863 1828236 D NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 1826863..1828236 Escherichia coli LY180 16979407 YP_008564842.1 CDS LY180_08675 NC_022364.1 1828277 1829533 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1828277..1829533) Escherichia coli LY180 16979408 YP_008564843.1 CDS LY180_08690 NC_022364.1 1830106 1830411 D Derived by automated computational analysis using gene prediction method: Protein Homology.; monooxygenase 1830106..1830411 Escherichia coli LY180 16979411 YP_008564844.1 CDS LY180_08695 NC_022364.1 1830537 1832141 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1830537..1832141 Escherichia coli LY180 16979412 YP_008564845.1 CDS LY180_08700 NC_022364.1 1832153 1832965 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1832153..1832965) Escherichia coli LY180 16979413 YP_008564846.1 CDS LY180_08705 NC_022364.1 1832969 1833754 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate reductase cytochrome B complement(1832969..1833754) Escherichia coli LY180 16979414 YP_008564847.1 CDS LY180_08710 NC_022364.1 1833751 1834470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin complement(1833751..1834470) Escherichia coli LY180 16979415 YP_008564848.1 CDS LY180_08715 NC_022364.1 1834483 1835130 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1834483..1835130) Escherichia coli LY180 16979416 YP_008564849.1 CDS LY180_08720 NC_022364.1 1835134 1837236 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1835134..1837236) Escherichia coli LY180 16979417 YP_008564850.1 CDS LY180_08725 NC_022364.1 1837257 1837883 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1837257..1837883) Escherichia coli LY180 16979418 YP_008564851.1 CDS LY180_08730 NC_022364.1 1838339 1838548 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1838339..1838548) Escherichia coli LY180 16979419 YP_008564852.1 CDS LY180_08735 NC_022364.1 1839105 1840517 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 1839105..1840517 Escherichia coli LY180 16979420 YP_008564853.1 CDS LY180_08740 NC_022364.1 1840828 1841064 D major outer membrane lipoprotein; interacts with peptidoglycan to maintain the integrity of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein lipoprotein 1840828..1841064 Escherichia coli LY180 16979421 YP_008564854.1 CDS LY180_08745 NC_022364.1 1841128 1842132 R catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein L,D-transpeptidase complement(1841128..1842132) Escherichia coli LY180 16979422 YP_008564855.1 CDS LY180_08750 NC_022364.1 1842281 1842697 R Acts with SufS to catalyze the formation of L-alanine from L-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desufuration protein SufE complement(1842281..1842697) Escherichia coli LY180 16979423 YP_008564856.1 CDS LY180_08755 NC_022364.1 1842710 1843930 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional cysteine desulfurase/selenocysteine lyase complement(1842710..1843930) Escherichia coli LY180 16979424 YP_008564857.1 CDS LY180_08760 NC_022364.1 1843927 1845198 R with SufBC activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufD complement(1843927..1845198) Escherichia coli LY180 16979425 YP_008564858.1 CDS sufC NC_022364.1 1845173 1845919 R part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase complement(1845173..1845919) Escherichia coli LY180 16979426 YP_008564859.1 CDS LY180_08770 NC_022364.1 1845929 1847416 R with SufCD activates cysteine desulfurase SufS; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase activator complex subunit SufB complement(1845929..1847416) Escherichia coli LY180 16979427 YP_008564860.1 CDS sufA NC_022364.1 1847425 1847793 R functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly scaffold protein complement(1847425..1847793) Escherichia coli LY180 16979428 YP_008564861.1 CDS LY180_08780 NC_022364.1 1848341 1848610 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1848341..1848610) Escherichia coli LY180 16979429 YP_008564862.1 CDS LY180_08785 NC_022364.1 1848629 1849039 R required for efficient enterobactin production; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA esterase complement(1848629..1849039) Escherichia coli LY180 16979430 YP_008564863.1 CDS LY180_08790 NC_022364.1 1849036 1852092 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1849036..1852092) Escherichia coli LY180 16979431 YP_008564864.1 CDS LY180_08795 NC_022364.1 1852481 1853593 D YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1852481..1853593 Escherichia coli LY180 16979432 YP_008564865.1 CDS LY180_08800 NC_022364.1 1854022 1854378 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1854022..1854378 Escherichia coli LY180 16979433 YP_008564866.1 CDS LY180_08805 NC_022364.1 1854478 1855692 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1854478..1855692 Escherichia coli LY180 16979434 YP_008564867.1 CDS LY180_08810 NC_022364.1 1855919 1857184 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 1855919..1857184 Escherichia coli LY180 16979435 YP_008564868.1 CDS LY180_08815 NC_022364.1 1857196 1858062 D YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase 1857196..1858062 Escherichia coli LY180 16979436 YP_008564869.1 CDS LY180_08820 NC_022364.1 1858093 1858851 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate dehydratase 1858093..1858851 Escherichia coli LY180 16979437 YP_008564870.1 CDS LY180_08825 NC_022364.1 1858995 1860590 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1858995..1860590 Escherichia coli LY180 16979438 YP_008564871.1 CDS LY180_08830 NC_022364.1 1860604 1861755 D may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl-CoA dehydrogenase 1860604..1861755 Escherichia coli LY180 16979439 YP_008564872.1 CDS LY180_08835 NC_022364.1 1861798 1862709 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1861798..1862709) Escherichia coli LY180 16979440 YP_008564873.1 CDS LY180_08840 NC_022364.1 1863025 1863789 D required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixB 1863025..1863789 Escherichia coli LY180 16979441 YP_008564874.1 CDS fixB NC_022364.1 1863809 1864747 D involved in electron transfer during carnitine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit alpha 1863809..1864747 Escherichia coli LY180 16979442 YP_008564875.1 CDS LY180_08850 NC_022364.1 1864803 1866092 D FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase FixC 1864803..1866092 Escherichia coli LY180 16979443 YP_008564876.1 CDS LY180_08855 NC_022364.1 1866089 1866382 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin ydiT 1866089..1866382 Escherichia coli LY180 16979444 YP_008564877.1 CDS LY180_08860 NC_022364.1 1866439 1868082 D acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; short chain acyl-CoA synthetase 1866439..1868082 Escherichia coli LY180 16979445 YP_008564878.1 CDS LY180_08865 NC_022364.1 1868139 1870517 R catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate synthase complement(1868139..1870517) Escherichia coli LY180 16979446 YP_008564879.1 CDS LY180_08870 NC_022364.1 1870850 1871683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PEP synthetase regulatory protein 1870850..1871683 Escherichia coli LY180 16979447 YP_008564880.1 CDS LY180_08875 NC_022364.1 1871840 1872886 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase 1871840..1872886 Escherichia coli LY180 16979448 YP_008564881.1 CDS LY180_08880 NC_022364.1 1873018 1873209 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1873018..1873209 Escherichia coli LY180 16979449 YP_008564882.1 CDS LY180_08885 NC_022364.1 1873213 1874649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1873213..1874649) Escherichia coli LY180 16979450 YP_008564883.1 CDS LY180_08890 NC_022364.1 1875672 1876136 R Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase complement(1875672..1876136) Escherichia coli LY180 16979451 YP_008564884.1 CDS LY180_08895 NC_022364.1 1876214 1876963 R ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12-transporter ATPase complement(1876214..1876963) Escherichia coli LY180 16979452 YP_008564885.1 CDS btuE NC_022364.1 1876963 1877514 R similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione peroxidase complement(1876963..1877514) Escherichia coli LY180 16979453 YP_008564886.1 CDS LY180_08905 NC_022364.1 1877577 1878557 R with BtuD and BtuF transports vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; vtamin B12-transporter permease complement(1877577..1878557) Escherichia coli LY180 16979454 YP_008564887.1 CDS ihfA NC_022364.1 1878658 1878957 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; Derived by automated computational analysis using gene prediction method: Protein Homology.; integration host factor subunit alpha complement(1878658..1878957) Escherichia coli LY180 16979455 YP_008564888.1 CDS pheT NC_022364.1 1878962 1881349 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase complement(1878962..1881349) Escherichia coli LY180 16979456 YP_008564889.1 CDS LY180_08920 NC_022364.1 1881364 1882347 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylalanyl-tRNA synthetase complement(1881364..1882347) Escherichia coli LY180 16979457 YP_008564890.1 CDS rplT NC_022364.1 1882797 1883153 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L20 complement(1882797..1883153) Escherichia coli LY180 16979458 YP_008564891.1 CDS LY180_08930 NC_022364.1 1883206 1883403 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L35 complement(1883206..1883403) Escherichia coli LY180 16979459 YP_008564892.1 CDS LY180_08935 NC_022364.1 1883500 1883841 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; translation initiation factor IF-3 complement(1883500..1883841) Escherichia coli LY180 16979460 YP_008564893.1 CDS thrS NC_022364.1 1884046 1885974 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Derived by automated computational analysis using gene prediction method: Protein Homology.; threonyl-tRNA synthetase complement(1884046..1885974) Escherichia coli LY180 16979461 YP_008564894.1 CDS LY180_08945 NC_022364.1 1886498 1887613 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1886498..1887613 Escherichia coli LY180 16979462 YP_008564895.1 CDS LY180_08950 NC_022364.1 1887716 1888396 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ankyrin 1887716..1888396 Escherichia coli LY180 16979463 YP_008564896.1 CDS LY180_08955 NC_022364.1 1888466 1889674 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1888466..1889674 Escherichia coli LY180 16979464 YP_008564897.1 CDS LY180_08960 NC_022364.1 1889910 1890017 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1889910..1890017 Escherichia coli LY180 16979465 YP_008564898.1 CDS LY180_08965 NC_022364.1 1890070 1890828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1890070..1890828) Escherichia coli LY180 16979466 YP_008564899.1 CDS LY180_08970 NC_022364.1 1891115 1892044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 1891115..1892044 Escherichia coli LY180 16979467 YP_008564900.1 CDS LY180_08975 NC_022364.1 1892145 1892435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1892145..1892435 Escherichia coli LY180 16979468 YP_008564901.1 CDS LY180_08980 NC_022364.1 1892541 1893401 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1892541..1893401 Escherichia coli LY180 16979469 YP_008564902.1 CDS LY180_08985 NC_022364.1 1893442 1893978 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1893442..1893978) Escherichia coli LY180 16979470 YP_008564903.1 CDS LY180_08990 NC_022364.1 1894125 1894793 D YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxyglucose-6-phosphatase 1894125..1894793 Escherichia coli LY180 16979471 YP_008564904.1 CDS LY180_08995 NC_022364.1 1894956 1895546 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1894956..1895546 Escherichia coli LY180 16979472 YP_008564905.1 CDS LY180_09000 NC_022364.1 1895679 1897070 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cystine transporter tcyP 1895679..1897070 Escherichia coli LY180 16979473 YP_008564906.1 CDS LY180_09010 NC_022364.1 1898166 1898408 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division modulator complement(1898166..1898408) Escherichia coli LY180 16979475 YP_008564907.1 CDS katE NC_022364.1 1898612 1900873 D Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroperoxidase II 1898612..1900873 Escherichia coli LY180 16979476 YP_008564908.1 CDS LY180_09020 NC_022364.1 1900920 1901678 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1900920..1901678) Escherichia coli LY180 16979477 YP_008564909.1 CDS LY180_09025 NC_022364.1 1901691 1903043 R catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacetylchitobiose-6-phosphate hydrolase complement(1901691..1903043) Escherichia coli LY180 16979478 YP_008564910.1 CDS LY180_09030 NC_022364.1 1903147 1903989 R represses the celABCDF-ydjC operon involved in carbon uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1903147..1903989) Escherichia coli LY180 16979479 YP_008564911.1 CDS LY180_09035 NC_022364.1 1903997 1904347 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIA complement(1903997..1904347) Escherichia coli LY180 16979480 YP_008564912.1 CDS LY180_09040 NC_022364.1 1904398 1905756 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIC complement(1904398..1905756) Escherichia coli LY180 16979481 YP_008564913.1 CDS LY180_09045 NC_022364.1 1905841 1906161 R catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N'-diacetylchitobiose transporter subunit IIB complement(1905841..1906161) Escherichia coli LY180 16979482 YP_008564914.1 CDS LY180_09050 NC_022364.1 1906460 1906798 R osmotically-inducible lipoprotein E; activator of ntr-like gene protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1906460..1906798) Escherichia coli LY180 16979483 YP_008564915.1 CDS nadE NC_022364.1 1907000 1907827 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD synthetase 1907000..1907827 Escherichia coli LY180 16979484 YP_008564916.1 CDS LY180_09065 NC_022364.1 1908057 1908944 D 3' incision activity; acts with UvrC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotide excision repair endonuclease 1908057..1908944 Escherichia coli LY180 16979485 YP_008564917.1 CDS LY180_09070 NC_022364.1 1908904 1909479 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1908904..1909479) Escherichia coli LY180 16979486 YP_008564918.1 CDS LY180_09075 NC_022364.1 1909682 1910167 R periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1909682..1910167) Escherichia coli LY180 16979487 YP_008564919.1 CDS LY180_09080 NC_022364.1 1910497 1911465 R catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate desuccinylase complement(1910497..1911465) Escherichia coli LY180 16979488 YP_008564920.1 CDS LY180_09085 NC_022364.1 1911458 1912801 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylarginine dihydrolase complement(1911458..1912801) Escherichia coli LY180 16979489 YP_008564921.1 CDS astD NC_022364.1 1912798 1914276 R a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinylglutamate-semialdehyde dehydrogenase complement(1912798..1914276) Escherichia coli LY180 16979490 YP_008564922.1 CDS LY180_09095 NC_022364.1 1914273 1915307 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine succinyltransferase complement(1914273..1915307) Escherichia coli LY180 16979491 YP_008564923.1 CDS LY180_09100 NC_022364.1 1915304 1916524 R catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine aminotransferase complement(1915304..1916524) Escherichia coli LY180 16979492 YP_008564924.1 CDS LY180_09110 NC_022364.1 1916970 1917776 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease III 1916970..1917776 Escherichia coli LY180 16979493 YP_008564925.1 CDS LY180_09115 NC_022364.1 1917943 1918653 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1917943..1918653 Escherichia coli LY180 16979494 YP_008564926.1 CDS LY180_09120 NC_022364.1 1918658 1919335 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1918658..1919335 Escherichia coli LY180 16979495 YP_008564927.1 CDS LY180_09125 NC_022364.1 1919350 1920057 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TVP38/TMEM64 family inner membrane protein ydjZ 1919350..1920057 Escherichia coli LY180 16979496 YP_008564928.1 CDS LY180_09130 NC_022364.1 1920057 1920605 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1920057..1920605 Escherichia coli LY180 16979497 YP_008564929.1 CDS LY180_09135 NC_022364.1 1920615 1921781 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1920615..1921781 Escherichia coli LY180 16979498 YP_008564930.1 CDS LY180_09140 NC_022364.1 1921754 1923289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine ABC transporter permease 1921754..1923289 Escherichia coli LY180 16979499 YP_008564931.1 CDS LY180_09145 NC_022364.1 1923289 1923942 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter ATP-binding protein 1923289..1923942 Escherichia coli LY180 16979500 YP_008564932.1 CDS LY180_09150 NC_022364.1 1924009 1925316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase 1924009..1925316 Escherichia coli LY180 16979501 YP_008564933.1 CDS LY180_09155 NC_022364.1 1925325 1925945 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1925325..1925945) Escherichia coli LY180 16979502 YP_008564934.1 CDS LY180_09160 NC_022364.1 1926032 1926439 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1926032..1926439 Escherichia coli LY180 16979503 YP_008564935.1 CDS LY180_09165 NC_022364.1 1926405 1926677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1926405..1926677) Escherichia coli LY180 16979504 YP_008564936.1 CDS LY180_09170 NC_022364.1 1926913 1928256 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate dehydrogenase 1926913..1928256 Escherichia coli LY180 16979505 YP_008564937.1 CDS LY180_09175 NC_022364.1 1928373 1929413 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1928373..1929413) Escherichia coli LY180 16979506 YP_008564938.1 CDS LY180_09180 NC_022364.1 1929541 1931502 R decatenates replicating daughter chromosomes; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase III complement(1929541..1931502) Escherichia coli LY180 16979507 YP_008564939.1 CDS LY180_09185 NC_022364.1 1931507 1932550 R catalyzes the formation of selenophosphate from selenide and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenophosphate synthetase complement(1931507..1932550) Escherichia coli LY180 16979508 YP_008564940.1 CDS LY180_09190 NC_022364.1 1932667 1933218 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1932667..1933218) Escherichia coli LY180 16979509 YP_008564941.1 CDS LY180_09195 NC_022364.1 1933379 1935235 D SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 1933379..1935235 Escherichia coli LY180 16979510 YP_008564942.1 CDS ansA NC_022364.1 1935402 1936418 D converts asparagine to aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic asparaginase I 1935402..1936418 Escherichia coli LY180 16979511 YP_008564943.1 CDS LY180_09205 NC_022364.1 1936429 1937070 D catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinamidase/pyrazinamidase 1936429..1937070 Escherichia coli LY180 16979512 YP_008564944.1 CDS LY180_09210 NC_022364.1 1937163 1938521 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(1937163..1938521) Escherichia coli LY180 16979513 YP_008564945.1 CDS LY180_09215 NC_022364.1 1938638 1939396 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(1938638..1939396) Escherichia coli LY180 16979514 YP_008564946.1 CDS LY180_09220 NC_022364.1 1939533 1940513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(1939533..1940513) Escherichia coli LY180 16979515 YP_008564947.1 CDS LY180_09225 NC_022364.1 1940523 1941470 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase complement(1940523..1941470) Escherichia coli LY180 16979516 YP_008564948.1 CDS gatY NC_022364.1 1941475 1942311 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(1941475..1942311) Escherichia coli LY180 16979517 YP_008564949.1 CDS LY180_09235 NC_022364.1 1942332 1943375 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(1942332..1943375) Escherichia coli LY180 16979518 YP_008564950.1 CDS LY180_09240 NC_022364.1 1943392 1944771 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(1943392..1944771) Escherichia coli LY180 16979519 YP_008564951.1 CDS LY180_09245 NC_022364.1 1944798 1945874 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(1944798..1945874) Escherichia coli LY180 16979520 YP_008564952.1 CDS LY180_09250 NC_022364.1 1946244 1946516 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1946244..1946516) Escherichia coli LY180 16979521 YP_008564953.1 CDS LY180_09255 NC_022364.1 1946558 1946971 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine sulfoxide reductase B complement(1946558..1946971) Escherichia coli LY180 16979522 YP_008564954.1 CDS LY180_09260 NC_022364.1 1947313 1948308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase 1947313..1948308 Escherichia coli LY180 16979523 YP_008564955.1 CDS LY180_09265 NC_022364.1 1948392 1949276 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-epimerase 1948392..1949276 Escherichia coli LY180 16979524 YP_008564956.1 CDS LY180_09270 NC_022364.1 1949327 1950181 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1949327..1950181) Escherichia coli LY180 16979525 YP_008564957.1 CDS LY180_09275 NC_022364.1 1950271 1951017 R scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA-interacting protein MipA complement(1950271..1951017) Escherichia coli LY180 16979526 YP_008564958.1 CDS LY180_09280 NC_022364.1 1951453 1953387 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PrkA family serine protein kinase 1951453..1953387 Escherichia coli LY180 16979527 YP_008564959.1 CDS LY180_09285 NC_022364.1 1953500 1954783 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1953500..1954783 Escherichia coli LY180 16979528 YP_008564960.1 CDS LY180_09290 NC_022364.1 1954930 1956405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1954930..1956405 Escherichia coli LY180 16979529 YP_008564961.1 CDS LY180_09295 NC_022364.1 1956586 1958076 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cylase 1956586..1958076 Escherichia coli LY180 16979530 YP_008564962.1 CDS LY180_09300 NC_022364.1 1958119 1958622 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1958119..1958622 Escherichia coli LY180 16979531 YP_008564963.1 CDS LY180_09305 NC_022364.1 1958623 1958727 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(1958623..1958727) Escherichia coli LY180 16979532 YP_008564964.1 CDS LY180_09310 NC_022364.1 1958897 1959343 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1958897..1959343 Escherichia coli LY180 16979533 YP_008564965.1 CDS LY180_09315 NC_022364.1 1959300 1960121 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(1959300..1960121) Escherichia coli LY180 16979534 YP_008564966.1 CDS LY180_09320 NC_022364.1 1960218 1961399 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1960218..1961399 Escherichia coli LY180 16979535 YP_008564967.1 CDS LY180_09325 NC_022364.1 1961454 1961801 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 1961454..1961801 Escherichia coli LY180 16979536 YP_008564968.1 CDS LY180_09330 NC_022364.1 1961823 1962077 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1961823..1962077) Escherichia coli LY180 16979537 YP_008564969.1 CDS LY180_09335 NC_022364.1 1962260 1963285 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 1962260..1963285 Escherichia coli LY180 16979538 YP_008564970.1 CDS LY180_09340 NC_022364.1 1963552 1963800 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1963552..1963800) Escherichia coli LY180 16979539 YP_008564971.1 CDS LY180_09345 NC_022364.1 1964028 1965236 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS609 complement(1964028..1965236) Escherichia coli LY180 16979540 YP_008564972.1 CDS LY180_09350 NC_022364.1 1965244 1965675 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 1965244..1965675 Escherichia coli LY180 16979541 YP_008564973.1 CDS LY180_09355 NC_022364.1 1965691 1965879 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1965691..1965879) Escherichia coli LY180 16979542 YP_008564974.1 CDS LY180_09360 NC_022364.1 1965883 1966242 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1965883..1966242) Escherichia coli LY180 16979543 YP_008564975.1 CDS LY180_09365 NC_022364.1 1966415 1967053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine export protein LeuE complement(1966415..1967053) Escherichia coli LY180 16979544 YP_008564976.1 CDS LY180_09370 NC_022364.1 1967180 1968124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(1967180..1968124) Escherichia coli LY180 16979545 YP_008564977.1 CDS LY180_09375 NC_022364.1 1968206 1969291 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tartrate dehydrogenase 1968206..1969291 Escherichia coli LY180 16979546 YP_008564978.1 CDS LY180_09380 NC_022364.1 1969542 1971152 D member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; betaine/carnitine/choline BCCT transporter 1969542..1971152 Escherichia coli LY180 16979547 YP_008564979.1 CDS LY180_09385 NC_022364.1 1971184 1972308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dioxygenase 1971184..1972308 Escherichia coli LY180 16979548 YP_008564980.1 CDS LY180_09390 NC_022364.1 1972364 1973329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dioxygenase subunit beta 1972364..1973329 Escherichia coli LY180 16979549 YP_008564981.1 CDS LY180_09395 NC_022364.1 1973383 1974510 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease D complement(1973383..1974510) Escherichia coli LY180 16979550 YP_008564982.1 CDS LY180_09400 NC_022364.1 1974580 1976265 R Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid--CoA ligase complement(1974580..1976265) Escherichia coli LY180 16979551 YP_008564983.1 CDS LY180_09405 NC_022364.1 1976470 1977051 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1976470..1977051) Escherichia coli LY180 16979552 YP_008564984.1 CDS LY180_09410 NC_022364.1 1977091 1977786 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1977091..1977786) Escherichia coli LY180 16979553 YP_008564985.1 CDS LY180_09415 NC_022364.1 1977844 1979754 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent helicase complement(1977844..1979754) Escherichia coli LY180 16979554 YP_008564986.1 CDS LY180_09420 NC_022364.1 1979886 1980230 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP 1979886..1980230 Escherichia coli LY180 16979555 YP_008564987.1 CDS LY180_09425 NC_022364.1 1980653 1980952 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 1980653..1980952 Escherichia coli LY180 16979556 YP_008564988.1 CDS LY180_09430 NC_022364.1 1981072 1981251 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1981072..1981251) Escherichia coli LY180 16979557 YP_008564989.1 CDS pabB NC_022364.1 1981325 1982686 D para-aminobenzoate synthase component 1; catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminodeoxychorismate synthase subunit I 1981325..1982686 Escherichia coli LY180 16979558 YP_008564990.1 CDS LY180_09440 NC_022364.1 1982690 1983268 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase 1982690..1983268 Escherichia coli LY180 16979559 YP_008564991.1 CDS LY180_09445 NC_022364.1 1983452 1984816 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 1983452..1984816 Escherichia coli LY180 16979560 YP_008564992.1 CDS LY180_09450 NC_022364.1 1984947 1986545 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase 1984947..1986545 Escherichia coli LY180 16979561 YP_008564993.1 CDS LY180_09455 NC_022364.1 1986549 1988105 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(1986549..1988105) Escherichia coli LY180 16979562 YP_008564994.1 CDS LY180_09460 NC_022364.1 1988568 1989539 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIAB 1988568..1989539 Escherichia coli LY180 16979563 YP_008564995.1 CDS LY180_09465 NC_022364.1 1989602 1990402 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IIC 1989602..1990402 Escherichia coli LY180 16979564 YP_008564996.1 CDS LY180_09470 NC_022364.1 1990415 1991266 D hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannose transporter subunit IID 1990415..1991266 Escherichia coli LY180 16979565 YP_008564997.1 CDS LY180_09475 NC_022364.1 1991321 1991779 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1991321..1991779 Escherichia coli LY180 16979566 YP_008564998.1 CDS LY180_09480 NC_022364.1 1992208 1992774 D membrane protein YebN; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 1992208..1992774 Escherichia coli LY180 16979567 YP_008564999.1 CDS rrmA NC_022364.1 1992771 1993580 R methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(1992771..1993580) Escherichia coli LY180 16979568 YP_008565000.1 CDS LY180_09490 NC_022364.1 1993746 1993955 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA chaperone/anti-terminator complement(1993746..1993955) Escherichia coli LY180 16979569 YP_008565001.1 CDS LY180_09495 NC_022364.1 1993968 1994111 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1993968..1994111) Escherichia coli LY180 16979570 YP_008565002.1 CDS LY180_09500 NC_022364.1 1994781 1995068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(1994781..1995068) Escherichia coli LY180 16979571 YP_008565003.1 CDS LY180_09505 NC_022364.1 1995143 1995286 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PhoPQ regulatory protein complement(1995143..1995286) Escherichia coli LY180 16979572 YP_008565004.1 CDS LY180_09510 NC_022364.1 1995827 1996618 R regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(1995827..1996618) Escherichia coli LY180 16979573 YP_008565005.1 CDS LY180_09515 NC_022364.1 1996795 1998168 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug MFS transporter 1996795..1998168 Escherichia coli LY180 16979574 YP_008565006.1 CDS LY180_09520 NC_022364.1 1998214 1999095 R metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HtpX complement(1998214..1999095) Escherichia coli LY180 16979575 YP_008565007.1 CDS LY180_09525 NC_022364.1 1999287 2001335 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxy-terminal protease complement(1999287..2001335) Escherichia coli LY180 16979576 YP_008565008.1 CDS LY180_09530 NC_022364.1 2001355 2002053 R affects solute and DNA transport through an unknown mechanism; Derived by automated computational analysis using gene prediction method: Protein Homology.; prop expression regulator complement(2001355..2002053) Escherichia coli LY180 16979577 YP_008565009.1 CDS LY180_09535 NC_022364.1 2002150 2002647 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Free methionine-R-sulfoxide reductase complement(2002150..2002647) Escherichia coli LY180 16979578 YP_008565010.1 CDS LY180_09540 NC_022364.1 2002777 2004060 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2002777..2004060 Escherichia coli LY180 16979579 YP_008565011.1 CDS LY180_09545 NC_022364.1 2004029 2006662 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2004029..2006662 Escherichia coli LY180 16979580 YP_008565012.1 CDS yebU NC_022364.1 2006736 2008181 D in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 2006736..2008181 Escherichia coli LY180 16979581 YP_008565013.1 CDS LY180_09555 NC_022364.1 2008299 2008535 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2008299..2008535 Escherichia coli LY180 16979582 YP_008565014.1 CDS LY180_09560 NC_022364.1 2008556 2008831 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2008556..2008831 Escherichia coli LY180 16979583 YP_008565015.1 CDS LY180_09565 NC_022364.1 2008832 2009488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase complement(2008832..2009488) Escherichia coli LY180 16979584 YP_008565016.1 CDS LY180_09570 NC_022364.1 2009884 2010225 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2009884..2010225) Escherichia coli LY180 16979585 YP_008565017.1 CDS LY180_09575 NC_022364.1 2010238 2011110 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2010238..2011110) Escherichia coli LY180 16979586 YP_008565018.1 CDS LY180_09580 NC_022364.1 2011114 2011488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2011114..2011488) Escherichia coli LY180 16979587 YP_008565019.1 CDS LY180_09585 NC_022364.1 2011627 2011857 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit theta 2011627..2011857 Escherichia coli LY180 16979588 YP_008565020.1 CDS LY180_09590 NC_022364.1 2011959 2012615 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2011959..2012615 Escherichia coli LY180 16979589 YP_008565021.1 CDS LY180_09595 NC_022364.1 2012639 2013301 D 3'-5' exonuclease activity on single or double-strand DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease X 2012639..2013301 Escherichia coli LY180 16979590 YP_008565022.1 CDS LY180_09600 NC_022364.1 2013298 2015358 R PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(2013298..2015358) Escherichia coli LY180 16979591 YP_008565023.1 CDS LY180_09605 NC_022364.1 2015567 2016226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2015567..2016226) Escherichia coli LY180 16979592 YP_008565024.1 CDS LY180_09610 NC_022364.1 2016552 2016908 R secreted protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2016552..2016908) Escherichia coli LY180 16979593 YP_008565025.1 CDS LY180_09615 NC_022364.1 2016975 2017265 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein YebG complement(2016975..2017265) Escherichia coli LY180 16979594 YP_008565026.1 CDS LY180_09620 NC_022364.1 2017399 2018577 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 2017399..2018577 Escherichia coli LY180 16979595 YP_008565027.1 CDS LY180_09625 NC_022364.1 2018633 2019274 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketohydroxyglutarate aldolase complement(2018633..2019274) Escherichia coli LY180 16979596 YP_008565028.1 CDS LY180_09630 NC_022364.1 2019311 2021122 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphogluconate dehydratase complement(2019311..2021122) Escherichia coli LY180 16979597 YP_008565029.1 CDS LY180_09635 NC_022364.1 2021357 2022832 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate 1-dehydrogenase complement(2021357..2022832) Escherichia coli LY180 16979598 YP_008565030.1 CDS LY180_09640 NC_022364.1 2022998 2023147 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2022998..2023147) Escherichia coli LY180 16979599 YP_008565031.1 CDS LY180_09645 NC_022364.1 2023170 2024039 D Represses the expression of the zwf, eda, glp and gap; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2023170..2024039 Escherichia coli LY180 16979600 YP_008565032.1 CDS LY180_09650 NC_022364.1 2024167 2025609 D catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate kinase 2024167..2025609 Escherichia coli LY180 16979601 YP_008565033.1 CDS LY180_09655 NC_022364.1 2025741 2026712 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(2025741..2026712) Escherichia coli LY180 16979602 YP_008565034.1 CDS LY180_09660 NC_022364.1 2026832 2028154 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(2026832..2028154) Escherichia coli LY180 16979603 YP_008565035.1 CDS znuA NC_022364.1 2028170 2029117 R involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc ABC transporter substrate-binding protein complement(2028170..2029117) Escherichia coli LY180 16979604 YP_008565036.1 CDS znuC NC_022364.1 2029181 2029936 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; zinc transporter 2029181..2029936 Escherichia coli LY180 16979605 YP_008565037.1 CDS znuB NC_022364.1 2029933 2030718 D involved in transport of zinc(II) with ZnuA and C; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter 2029933..2030718 Escherichia coli LY180 16979606 YP_008565038.1 CDS LY180_09680 NC_022364.1 2030897 2031877 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2030897..2031877) Escherichia coli LY180 16979607 YP_008565039.1 CDS ruvB NC_022364.1 2032145 2033155 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvB complement(2032145..2033155) Escherichia coli LY180 16979608 YP_008565040.1 CDS ruvA NC_022364.1 2033164 2033775 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction DNA helicase RuvA complement(2033164..2033775) Escherichia coli LY180 16979609 YP_008565041.1 CDS LY180_09695 NC_022364.1 2034050 2034652 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2034050..2034652 Escherichia coli LY180 16979610 YP_008565042.1 CDS ruvC NC_022364.1 2034654 2035175 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase complement(2034654..2035175) Escherichia coli LY180 16979611 YP_008565043.1 CDS LY180_09705 NC_022364.1 2035210 2035950 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2035210..2035950) Escherichia coli LY180 16979612 YP_008565044.1 CDS nudB NC_022364.1 2035979 2036488 R catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate pyrophosphatase complement(2035979..2036488) Escherichia coli LY180 16979613 YP_008565045.1 CDS LY180_09715 NC_022364.1 2036549 2038321 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartyl-tRNA synthetase complement(2036549..2038321) Escherichia coli LY180 16979614 YP_008565046.1 CDS LY180_09720 NC_022364.1 2038631 2039197 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 2038631..2039197 Escherichia coli LY180 16979615 YP_008565047.1 CDS LY180_09725 NC_022364.1 2039194 2040012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2039194..2040012 Escherichia coli LY180 16979616 YP_008565048.1 CDS LY180_09730 NC_022364.1 2040065 2040460 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2040065..2040460 Escherichia coli LY180 16979617 YP_008565049.1 CDS LY180_09735 NC_022364.1 2040501 2041244 D catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA cytosine-C5-methyltransferase 2040501..2041244 Escherichia coli LY180 16979618 YP_008565050.1 CDS LY180_09740 NC_022364.1 2041241 2042212 D catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2041241..2042212 Escherichia coli LY180 16979619 YP_008565051.1 CDS bisC NC_022364.1 2042377 2044806 R catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase complement(2042377..2044806) Escherichia coli LY180 16979620 YP_008565052.1 CDS LY180_09750 NC_022364.1 2044831 2045931 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C complement(2044831..2045931) Escherichia coli LY180 16979621 YP_008565053.1 CDS LY180_09755 NC_022364.1 2046319 2047065 R Derived by automated computational analysis using gene prediction method: Protein Homology.; copper homeostasis protein CutC complement(2046319..2047065) Escherichia coli LY180 16979622 YP_008565054.1 CDS LY180_09760 NC_022364.1 2047079 2047645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2047079..2047645) Escherichia coli LY180 16979623 YP_008565055.1 CDS LY180_09765 NC_022364.1 2047861 2049594 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arginyl-tRNA synthetase 2047861..2049594 Escherichia coli LY180 16979624 YP_008565056.1 CDS LY180_09770 NC_022364.1 2050379 2050771 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar protein flhE complement(2050379..2050771) Escherichia coli LY180 16979625 YP_008565057.1 CDS flhA NC_022364.1 2050771 2052849 R membrane protein involved in the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhA complement(2050771..2052849) Escherichia coli LY180 16979626 YP_008565058.1 CDS flhB NC_022364.1 2052842 2053990 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FlhB complement(2052842..2053990) Escherichia coli LY180 16979627 YP_008565059.1 CDS LY180_09785 NC_022364.1 2054192 2054836 R cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheZ complement(2054192..2054836) Escherichia coli LY180 16979628 YP_008565060.1 CDS LY180_09790 NC_022364.1 2054847 2055236 R chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheY complement(2054847..2055236) Escherichia coli LY180 16979629 YP_008565061.1 CDS LY180_09795 NC_022364.1 2055251 2056300 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein complement(2055251..2056300) Escherichia coli LY180 16979630 YP_008565062.1 CDS LY180_09800 NC_022364.1 2056303 2057163 R methylates the MCP; Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheR complement(2056303..2057163) Escherichia coli LY180 16979631 YP_008565063.1 CDS LY180_09805 NC_022364.1 2057182 2058783 R serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(2057182..2058783) Escherichia coli LY180 16979632 YP_008565064.1 CDS LY180_09810 NC_022364.1 2058829 2060490 R serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein complement(2058829..2060490) Escherichia coli LY180 16979633 YP_008565065.1 CDS LY180_09815 NC_022364.1 2060635 2061138 R Derived by automated computational analysis using gene prediction method: Protein Homology.; purine-binding chemotaxis protein complement(2060635..2061138) Escherichia coli LY180 16979634 YP_008565066.1 CDS LY180_09820 NC_022364.1 2061159 2063123 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chemotaxis protein CheA complement(2061159..2063123) Escherichia coli LY180 16979635 YP_008565067.1 CDS motB NC_022364.1 2063128 2064054 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotB complement(2063128..2064054) Escherichia coli LY180 16979636 YP_008565068.1 CDS LY180_09830 NC_022364.1 2064051 2064938 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor protein MotA complement(2064051..2064938) Escherichia coli LY180 16979637 YP_008565069.1 CDS LY180_09835 NC_022364.1 2065065 2065643 R With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(2065065..2065643) Escherichia coli LY180 16979638 YP_008565070.1 CDS LY180_09840 NC_022364.1 2065646 2065996 R with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional activator FlhD complement(2065646..2065996) Escherichia coli LY180 16979639 YP_008565071.1 CDS LY180_09845 NC_022364.1 2066776 2067204 D ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein C 2066776..2067204 Escherichia coli LY180 16979640 YP_008565072.1 CDS LY180_09850 NC_022364.1 2067211 2068635 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate synthase complement(2067211..2068635) Escherichia coli LY180 16979641 YP_008565073.1 CDS LY180_09855 NC_022364.1 2068610 2069410 R biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate phosphatase complement(2068610..2069410) Escherichia coli LY180 16979642 YP_008565074.1 CDS araH NC_022364.1 2069577 2070563 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter permease complement(2069577..2070563) Escherichia coli LY180 16979643 YP_008565075.1 CDS araG NC_022364.1 2070578 2072092 R Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter ATP-binding protein complement(2070578..2072092) Escherichia coli LY180 16979644 YP_008565076.1 CDS LY180_09870 NC_022364.1 2072162 2073151 R with AraGH is involved in the transport of arabinose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose ABC transporter substrate-binding protein complement(2072162..2073151) Escherichia coli LY180 16979645 YP_008565077.1 CDS LY180_09875 NC_022364.1 2073948 2074451 D ferritin B; required for virulence in Salmonella; may be involved in repair of damaged Fe-S clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 2073948..2074451 Escherichia coli LY180 16979646 YP_008565078.1 CDS LY180_09880 NC_022364.1 2074530 2074781 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2074530..2074781) Escherichia coli LY180 16979647 YP_008565079.1 CDS LY180_09885 NC_022364.1 2075350 2075448 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2075350..2075448) Escherichia coli LY180 16979648 YP_008565080.1 CDS LY180_09890 NC_022364.1 2075739 2076236 D cytoplasmic iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferritin 2075739..2076236 Escherichia coli LY180 16979649 YP_008565081.1 CDS LY180_09895 NC_022364.1 2076274 2076513 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2076274..2076513) Escherichia coli LY180 16979650 YP_008565082.1 CDS LY180_09900 NC_022364.1 2076704 2077915 D tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine transporter TyrP 2076704..2077915 Escherichia coli LY180 16979651 YP_008565083.1 CDS LY180_09905 NC_022364.1 2077977 2078642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2077977..2078642) Escherichia coli LY180 16979652 YP_008565084.1 CDS LY180_09925 NC_022364.1 2079291 2079839 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylglycerophosphate synthetase complement(2079291..2079839) Escherichia coli LY180 16979656 YP_008565085.1 CDS uvrC NC_022364.1 2079896 2081728 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit C complement(2079896..2081728) Escherichia coli LY180 16979657 YP_008565086.1 CDS sirA NC_022364.1 2081725 2082381 R in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2081725..2082381) Escherichia coli LY180 16979658 YP_008565087.1 CDS LY180_09940 NC_022364.1 2082840 2083064 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2082840..2083064 Escherichia coli LY180 16979659 YP_008565088.1 CDS LY180_09945 NC_022364.1 2083131 2083853 R regulates genes involved in cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2083131..2083853) Escherichia coli LY180 16979660 YP_008565089.1 CDS LY180_09950 NC_022364.1 2084083 2084835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine ABC transporter ATP-binding protein complement(2084083..2084835) Escherichia coli LY180 16979661 YP_008565090.1 CDS LY180_09955 NC_022364.1 2084832 2085500 R Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease complement(2084832..2085500) Escherichia coli LY180 16979662 YP_008565091.1 CDS LY180_09960 NC_022364.1 2085515 2086501 R catalyzes the formation of pyruvate from D-cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-cysteine desulfhydrase complement(2085515..2086501) Escherichia coli LY180 16979663 YP_008565092.1 CDS LY180_09965 NC_022364.1 2086606 2087406 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cystine transporter subunit complement(2086606..2087406) Escherichia coli LY180 16979664 YP_008565093.1 CDS LY180_09970 NC_022364.1 2087494 2088045 R expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliZ complement(2087494..2088045) Escherichia coli LY180 16979665 YP_008565094.1 CDS fliA NC_022364.1 2088091 2088810 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis sigma factor complement(2088091..2088810) Escherichia coli LY180 16979666 YP_008565095.1 CDS LY180_09980 NC_022364.1 2089130 2090824 R Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellin complement(2089130..2090824) Escherichia coli LY180 16982300 YP_008565096.1 CDS fliD NC_022364.1 2091090 2092496 D involved in flagellin assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar capping protein 2091090..2092496 Escherichia coli LY180 16979668 YP_008565097.1 CDS fliS NC_022364.1 2092521 2092931 D flagellin specific chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliS 2092521..2092931 Escherichia coli LY180 16979669 YP_008565098.1 CDS LY180_09995 NC_022364.1 2092931 2093296 D binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliT 2092931..2093296 Escherichia coli LY180 16979670 YP_008565099.1 CDS LY180_10000 NC_022364.1 2093374 2094861 D converts 1,4-alpha-D-glucans to maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 2093374..2094861 Escherichia coli LY180 16979671 YP_008565100.1 CDS LY180_10005 NC_022364.1 2094895 2095308 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2094895..2095308) Escherichia coli LY180 16979672 YP_008565101.1 CDS LY180_10010 NC_022364.1 2095495 2096700 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2095495..2096700 Escherichia coli LY180 16979673 YP_008565102.1 CDS LY180_10015 NC_022364.1 2096697 2096930 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2096697..2096930 Escherichia coli LY180 16979674 YP_008565103.1 CDS LY180_10020 NC_022364.1 2097747 2098955 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS609 complement(2097747..2098955) Escherichia coli LY180 16979675 YP_008565104.1 CDS LY180_10025 NC_022364.1 2099026 2099637 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase TnA 2099026..2099637 Escherichia coli LY180 16979676 YP_008565105.1 CDS LY180_10030 NC_022364.1 2100367 2101164 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(2100367..2101164) Escherichia coli LY180 16979677 YP_008565106.1 CDS LY180_10035 NC_022364.1 2101174 2101725 R YbhB; similar to rat and human kinase inhibitory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; kinase inhibitor protein complement(2101174..2101725) Escherichia coli LY180 16979678 YP_008565107.1 CDS emrE NC_022364.1 2101894 2102226 R member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug transporter complement(2101894..2102226) Escherichia coli LY180 16979679 YP_008565108.1 CDS LY180_10045 NC_022364.1 2102354 2102482 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2102354..2102482 Escherichia coli LY180 16979680 YP_008565109.1 CDS fliE NC_022364.1 2102560 2102874 R forms a junction between the M-ring and FlgB during flagella biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-basal body protein FliE complement(2102560..2102874) Escherichia coli LY180 16979681 YP_008565110.1 CDS fliF NC_022364.1 2103089 2104747 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar MS-ring protein 2103089..2104747 Escherichia coli LY180 16979682 YP_008565111.1 CDS fliG NC_022364.1 2104740 2105735 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliG 2104740..2105735 Escherichia coli LY180 16979683 YP_008565112.1 CDS fliH NC_022364.1 2105728 2106414 D binds to and inhibits the function of flagella specific ATPase FliI; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar assembly protein H 2105728..2106414 Escherichia coli LY180 16979684 YP_008565113.1 CDS fliI NC_022364.1 2106414 2107787 D involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP synthase 2106414..2107787 Escherichia coli LY180 16979685 YP_008565114.1 CDS fliJ NC_022364.1 2107806 2108249 D rod/hook and filament chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis chaperone 2107806..2108249 Escherichia coli LY180 16979686 YP_008565115.1 CDS LY180_10080 NC_022364.1 2108246 2109373 D Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar hook-length control protein FliK 2108246..2109373 Escherichia coli LY180 16979687 YP_008565116.1 CDS fliL NC_022364.1 2109478 2109942 D interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar basal body protein FliL 2109478..2109942 Escherichia coli LY180 16979688 YP_008565117.1 CDS fliM NC_022364.1 2109947 2110951 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliM 2109947..2110951 Escherichia coli LY180 16979689 YP_008565118.1 CDS fliN NC_022364.1 2110948 2111361 D One of three proteins involved in switching the direction of the flagellar rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar motor switch protein FliN 2110948..2111361 Escherichia coli LY180 16979690 YP_008565119.1 CDS LY180_10100 NC_022364.1 2111364 2111729 D with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliO 2111364..2111729 Escherichia coli LY180 16979691 YP_008565120.1 CDS fliP NC_022364.1 2111729 2112466 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliP 2111729..2112466 Escherichia coli LY180 16979692 YP_008565121.1 CDS fliQ NC_022364.1 2112476 2112745 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliQ 2112476..2112745 Escherichia coli LY180 16979693 YP_008565122.1 CDS fliR NC_022364.1 2112754 2113539 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagellar biosynthesis protein FliR 2112754..2113539 Escherichia coli LY180 16979694 YP_008565123.1 CDS rcsA NC_022364.1 2113829 2114452 D with RcsB is a positive regulator of capsular polysaccharide synthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid capsular biosynthesis activation protein A 2113829..2114452 Escherichia coli LY180 16979695 YP_008565124.1 CDS LY180_10125 NC_022364.1 2114496 2114684 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2114496..2114684) Escherichia coli LY180 16979696 YP_008565125.1 CDS LY180_10130 NC_022364.1 2114847 2115074 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2114847..2115074 Escherichia coli LY180 16979697 YP_008565126.1 CDS LY180_10135 NC_022364.1 2115372 2116187 D catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannosyl-3-phosphoglycerate phosphatase 2115372..2116187 Escherichia coli LY180 16979698 YP_008565127.1 CDS LY180_10140 NC_022364.1 2116184 2117878 R catalyzes the formation of cyclic di-3',5'-guanylate from guanosine triphosphate; involved in the regulation of cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase complement(2116184..2117878) Escherichia coli LY180 16979699 YP_008565128.1 CDS LY180_10145 NC_022364.1 2118049 2118231 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2118049..2118231) Escherichia coli LY180 16979700 YP_008565129.1 CDS LY180_10150 NC_022364.1 2118310 2119227 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2118310..2119227) Escherichia coli LY180 16979701 YP_008565130.1 CDS LY180_10155 NC_022364.1 2119400 2120329 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2119400..2120329 Escherichia coli LY180 16979702 YP_008565131.1 CDS LY180_10160 NC_022364.1 2120318 2120788 R DNA mismatch endonuclease; recognizes and repairs T:G mismatches; Derived by automated computational analysis using gene prediction method: Protein Homology.; very short patch repair endonuclease complement(2120318..2120788) Escherichia coli LY180 16979703 YP_008565132.1 CDS LY180_10165 NC_022364.1 2120769 2122187 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-cytosine methyltransferase complement(2120769..2122187) Escherichia coli LY180 16979704 YP_008565133.1 CDS LY180_10170 NC_022364.1 2122254 2122949 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2122254..2122949) Escherichia coli LY180 16979705 YP_008565134.1 CDS LY180_10175 NC_022364.1 2122989 2123270 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2122989..2123270) Escherichia coli LY180 16979706 YP_008565135.1 CDS LY180_10180 NC_022364.1 2123921 2125036 D allows for ions and hydrophilic solutes to cross the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin protein C 2123921..2125036 Escherichia coli LY180 16979707 YP_008565136.1 CDS LY180_10185 NC_022364.1 2125628 2126479 D Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein HSP31 2125628..2126479 Escherichia coli LY180 16979708 YP_008565137.1 CDS LY180_10190 NC_022364.1 2126587 2127945 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(2126587..2127945) Escherichia coli LY180 16979709 YP_008565138.1 CDS LY180_10195 NC_022364.1 2127945 2128664 R induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2127945..2128664) Escherichia coli LY180 16979710 YP_008565139.1 CDS LY180_10200 NC_022364.1 2128749 2129162 D catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyisourate hydrolase 2128749..2129162 Escherichia coli LY180 16979711 YP_008565140.1 CDS LY180_10205 NC_022364.1 2129271 2130275 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; TMAO/DMSO reductase 2129271..2130275 Escherichia coli LY180 16979712 YP_008565141.1 CDS LY180_10210 NC_022364.1 2130276 2130911 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite oxidase subunit YedZ 2130276..2130911 Escherichia coli LY180 16979713 YP_008565142.1 CDS LY180_10215 NC_022364.1 2131168 2131818 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium-binding protein 2131168..2131818 Escherichia coli LY180 16979714 YP_008565143.1 CDS LY180_10220 NC_022364.1 2132161 2132691 D B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome B561 2132161..2132691 Escherichia coli LY180 16979715 YP_008565144.1 CDS LY180_10230 NC_022364.1 2133405 2134241 D Mlc anti-repressor; regulates ptsG by binding and inactivating Mlc; Derived by automated computational analysis using gene prediction method: Protein Homology.; DgsA anti-repressor MtfA 2133405..2134241 Escherichia coli LY180 16979717 YP_008565145.1 CDS LY180_10240 NC_022364.1 2136293 2141806 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2136293..2141806 Escherichia coli LY180 16979719 YP_008565146.1 CDS LY180_10245 NC_022364.1 2142068 2143120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2142068..2143120) Escherichia coli LY180 16979720 YP_008565147.1 CDS LY180_10250 NC_022364.1 2143435 2144751 D Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate transporter 2143435..2144751 Escherichia coli LY180 16979721 YP_008565148.1 CDS LY180_10255 NC_022364.1 2144853 2146307 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; Derived by automated computational analysis using gene prediction method: Protein Homology.; AMP nucleosidase 2144853..2146307 Escherichia coli LY180 16979722 YP_008565149.1 CDS LY180_10260 NC_022364.1 2146650 2147273 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2146650..2147273 Escherichia coli LY180 16979723 YP_008565150.1 CDS LY180_10265 NC_022364.1 2147283 2148491 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2147283..2148491) Escherichia coli LY180 16979724 YP_008565151.1 CDS LY180_10270 NC_022364.1 2148564 2148704 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2148564..2148704 Escherichia coli LY180 16979725 YP_008565152.1 CDS LY180_10275 NC_022364.1 2148705 2148932 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2148705..2148932) Escherichia coli LY180 16979726 YP_008565153.1 CDS LY180_10285 NC_022364.1 2149339 2150826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MATE family multidrug exporter complement(2149339..2150826) Escherichia coli LY180 16979728 YP_008565154.1 CDS cbl NC_022364.1 2151100 2152050 R LysR-type transcriptional regulator similar to CysB; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon; regulated by CysB; DNA-binding transcriptional activator for the ssuEADCB and tauABCD operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; CysB family transcriptional regulator complement(2151100..2152050) Escherichia coli LY180 16979730 YP_008565155.1 CDS LY180_10300 NC_022364.1 2152152 2153069 R Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2152152..2153069) Escherichia coli LY180 16979731 YP_008565156.1 CDS LY180_10310 NC_022364.1 2153527 2154459 R catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain; Derived by automated computational analysis using gene prediction method: Protein Homology.; L,D-transpeptidase complement(2153527..2154459) Escherichia coli LY180 16979733 YP_008565157.1 CDS cobT NC_022364.1 2154524 2155603 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2154524..2155603) Escherichia coli LY180 16979734 YP_008565158.1 CDS cobS NC_022364.1 2155615 2156358 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalamin synthase complement(2155615..2156358) Escherichia coli LY180 16979735 YP_008565159.1 CDS cobU NC_022364.1 2156355 2156900 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosylcobinamide kinase complement(2156355..2156900) Escherichia coli LY180 16979736 YP_008565160.1 CDS LY180_10330 NC_022364.1 2157359 2157688 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2157359..2157688) Escherichia coli LY180 16979737 YP_008565161.1 CDS LY180_10335 NC_022364.1 2157860 2158918 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2157860..2158918) Escherichia coli LY180 16979738 YP_008565162.1 CDS LY180_10340 NC_022364.1 2159116 2159589 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase inhibitor complement(2159116..2159589) Escherichia coli LY180 16979739 YP_008565163.1 CDS LY180_10345 NC_022364.1 2159708 2160874 R removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase complement(2159708..2160874) Escherichia coli LY180 16979740 YP_008565164.1 CDS sbcB NC_022364.1 2161083 2162510 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease I 2161083..2162510 Escherichia coli LY180 16979741 YP_008565165.1 CDS LY180_10355 NC_022364.1 2162553 2162780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2162553..2162780) Escherichia coli LY180 16979742 YP_008565166.1 CDS LY180_10360 NC_022364.1 2162794 2163852 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2162794..2163852) Escherichia coli LY180 16979743 YP_008565167.1 CDS LY180_10365 NC_022364.1 2164031 2165389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine/spermidine ABC transporter complement(2164031..2165389) Escherichia coli LY180 16979744 YP_008565168.1 CDS LY180_10370 NC_022364.1 2165656 2166585 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2165656..2166585) Escherichia coli LY180 16979745 YP_008565169.1 CDS LY180_10375 NC_022364.1 2166631 2167455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2166631..2167455) Escherichia coli LY180 16979746 YP_008565170.1 CDS LY180_10380 NC_022364.1 2167538 2167792 R Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin YoeB complement(2167538..2167792) Escherichia coli LY180 16979747 YP_008565171.1 CDS LY180_10385 NC_022364.1 2167789 2168040 R Antitoxin that counteracts the effect of the YoeB toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin complement(2167789..2168040) Escherichia coli LY180 16979748 YP_008565172.1 CDS hisG NC_022364.1 2168519 2169418 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP phosphoribosyltransferase 2168519..2169418 Escherichia coli LY180 16979749 YP_008565173.1 CDS hisD NC_022364.1 2169424 2170728 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2169424..2170728 Escherichia coli LY180 16979750 YP_008565174.1 CDS LY180_10400 NC_022364.1 2170725 2171795 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidinol-phosphate aminotransferase 2170725..2171795 Escherichia coli LY180 16979751 YP_008565175.1 CDS LY180_10405 NC_022364.1 2171795 2172862 D catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazoleglycerol-phosphate dehydratase 2171795..2172862 Escherichia coli LY180 16979752 YP_008565176.1 CDS hisH NC_022364.1 2172862 2173452 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2172862..2173452 Escherichia coli LY180 16979753 YP_008565177.1 CDS LY180_10415 NC_022364.1 2173452 2174189 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2173452..2174189 Escherichia coli LY180 16979754 YP_008565178.1 CDS LY180_10420 NC_022364.1 2174171 2174947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; imidazole glycerol phosphate synthase 2174171..2174947 Escherichia coli LY180 16979755 YP_008565179.1 CDS LY180_10425 NC_022364.1 2174941 2175549 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosyl-AMP cyclohydrolase 2174941..2175549 Escherichia coli LY180 16979756 YP_008565180.1 CDS LY180_10430 NC_022364.1 2175645 2176625 R regulator of length of O-antigen component of lipopolysaccharide chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; chain-length determining protein complement(2175645..2176625) Escherichia coli LY180 16979757 YP_008565181.1 CDS LY180_10435 NC_022364.1 2176768 2177934 R catalyzes the formation of UDP-glucuronate from UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose 6-dehydrogenase complement(2176768..2177934) Escherichia coli LY180 16979758 YP_008565182.1 CDS LY180_10440 NC_022364.1 2178183 2179589 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate dehydrogenase complement(2178183..2179589) Escherichia coli LY180 16979759 YP_008565183.1 CDS LY180_10445 NC_022364.1 2179753 2181123 R capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase complement(2179753..2181123) Escherichia coli LY180 16979760 YP_008565184.1 CDS cpsB NC_022364.1 2181206 2182645 R capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase complement(2181206..2182645) Escherichia coli LY180 16979761 YP_008565185.1 CDS LY180_10455 NC_022364.1 2182635 2183840 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family 1 complement(2182635..2183840) Escherichia coli LY180 16979762 YP_008565186.1 CDS LY180_10460 NC_022364.1 2183861 2184868 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-galactose-4-epimerase complement(2183861..2184868) Escherichia coli LY180 16979763 YP_008565187.1 CDS LY180_10465 NC_022364.1 2184885 2186030 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family 1 complement(2184885..2186030) Escherichia coli LY180 16979764 YP_008565188.1 CDS LY180_10470 NC_022364.1 2186017 2187048 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family 1 complement(2186017..2187048) Escherichia coli LY180 16979765 YP_008565189.1 CDS LY180_10475 NC_022364.1 2187045 2187905 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glycosyl transferase family A complement(2187045..2187905) Escherichia coli LY180 16979766 YP_008565190.1 CDS LY180_10480 NC_022364.1 2187911 2189254 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polymerase complement(2187911..2189254) Escherichia coli LY180 16979767 YP_008565191.1 CDS LY180_10485 NC_022364.1 2189254 2190492 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polysaccharide biosynthesis protein complement(2189254..2190492) Escherichia coli LY180 16979768 YP_008565192.1 CDS LY180_10490 NC_022364.1 2190867 2191760 R together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UTP--glucose-1-phosphate uridylyltransferase subunit GalU complement(2190867..2191760) Escherichia coli LY180 16979769 YP_008565193.1 CDS wcaM NC_022364.1 2191935 2193329 R WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2191935..2193329) Escherichia coli LY180 16979770 YP_008565194.1 CDS LY180_10500 NC_022364.1 2193340 2194560 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis glycosyltransferase WcaL complement(2193340..2194560) Escherichia coli LY180 16979771 YP_008565195.1 CDS LY180_10505 NC_022364.1 2194557 2195837 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2194557..2195837) Escherichia coli LY180 16979772 YP_008565196.1 CDS LY180_10510 NC_022364.1 2196209 2197687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid exporter complement(2196209..2197687) Escherichia coli LY180 16979773 YP_008565197.1 CDS LY180_10515 NC_022364.1 2197689 2199083 R WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-glucose lipid carrier transferase complement(2197689..2199083) Escherichia coli LY180 16979774 YP_008565198.1 CDS LY180_10520 NC_022364.1 2199138 2200508 R capsular polysaccharide biosynthesis protein; catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomannomutase complement(2199138..2200508) Escherichia coli LY180 16979775 YP_008565199.1 CDS LY180_10525 NC_022364.1 2200534 2200692 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2200534..2200692 Escherichia coli LY180 16979776 YP_008565200.1 CDS cpsB NC_022364.1 2200701 2202137 R capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannose-1-phosphate guanyltransferase complement(2200701..2202137) Escherichia coli LY180 16979777 YP_008565201.1 CDS LY180_10535 NC_022364.1 2202140 2203363 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2202140..2203363) Escherichia coli LY180 16979778 YP_008565202.1 CDS LY180_10540 NC_022364.1 2203360 2203842 R catalyzes the formation of GDP and D-mannose from GDP-D-mannose; also hydrolyzes GDP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose mannosyl hydrolase NudD complement(2203360..2203842) Escherichia coli LY180 16979779 YP_008565203.1 CDS LY180_10545 NC_022364.1 2203842 2204807 R bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase;catalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-fucose synthetase complement(2203842..2204807) Escherichia coli LY180 16979780 YP_008565204.1 CDS LY180_10550 NC_022364.1 2204810 2205931 R catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose; Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose 4,6-dehydratase complement(2204810..2205931) Escherichia coli LY180 16979781 YP_008565205.1 CDS LY180_10555 NC_022364.1 2205957 2206505 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2205957..2206505) Escherichia coli LY180 16979782 YP_008565206.1 CDS LY180_10560 NC_022364.1 2206521 2207267 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2206521..2207267) Escherichia coli LY180 16979783 YP_008565207.1 CDS wcaD NC_022364.1 2207278 2208495 R essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; Derived by automated computational analysis using gene prediction method: Protein Homology.; colanic acid biosynthesis protein complement(2207278..2208495) Escherichia coli LY180 16979784 YP_008565208.1 CDS LY180_10570 NC_022364.1 2208470 2209687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2208470..2209687) Escherichia coli LY180 16979785 YP_008565209.1 CDS LY180_10575 NC_022364.1 2209684 2210172 R acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; Derived by automated computational analysis using gene prediction method: Protein Homology.; acyl transferase complement(2209684..2210172) Escherichia coli LY180 16979786 YP_008565210.1 CDS LY180_10580 NC_022364.1 2210175 2211014 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(2210175..2211014) Escherichia coli LY180 16979787 YP_008565211.1 CDS LY180_10585 NC_022364.1 2211192 2213354 R Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine kinase complement(2211192..2213354) Escherichia coli LY180 16979788 YP_008565212.1 CDS LY180_10590 NC_022364.1 2213357 2213800 R Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-tyrosine phosphatase complement(2213357..2213800) Escherichia coli LY180 16979789 YP_008565213.1 CDS LY180_10595 NC_022364.1 2213806 2214945 R required for the translocation of capsular polysaccharide through the outer membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; polysaccharide export protein Wza complement(2213806..2214945) Escherichia coli LY180 16979790 YP_008565214.1 CDS LY180_10600 NC_022364.1 2215604 2217187 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2215604..2217187 Escherichia coli LY180 16979791 YP_008565215.1 CDS LY180_10605 NC_022364.1 2217262 2217600 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin RelE 2217262..2217600 Escherichia coli LY180 16979792 YP_008565216.1 CDS LY180_10610 NC_022364.1 2217590 2217880 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 2217590..2217880 Escherichia coli LY180 16979793 YP_008565217.1 CDS LY180_10615 NC_022364.1 2217933 2219786 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; Derived by automated computational analysis using gene prediction method: Protein Homology.; assembly protein complement(2217933..2219786) Escherichia coli LY180 16979794 YP_008565218.1 CDS LY180_10620 NC_022364.1 2219808 2220389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxycytidine triphosphate deaminase complement(2219808..2220389) Escherichia coli LY180 16979795 YP_008565219.1 CDS LY180_10625 NC_022364.1 2220481 2221122 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine/cytidine kinase complement(2220481..2221122) Escherichia coli LY180 16979796 YP_008565220.1 CDS LY180_10630 NC_022364.1 2221440 2224757 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2221440..2224757 Escherichia coli LY180 16979797 YP_008565221.1 CDS LY180_10635 NC_022364.1 2224796 2225653 R inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-methyl-adenine DNA glycosylase complement(2224796..2225653) Escherichia coli LY180 16979798 YP_008565222.1 CDS LY180_10640 NC_022364.1 2225787 2227139 D Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone 2225787..2227139 Escherichia coli LY180 16979799 YP_008565223.1 CDS LY180_10645 NC_022364.1 2227151 2229097 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2227151..2229097) Escherichia coli LY180 16979800 YP_008565224.1 CDS LY180_10650 NC_022364.1 2229295 2229756 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2229295..2229756 Escherichia coli LY180 16979801 YP_008565225.1 CDS LY180_10655 NC_022364.1 2229821 2230582 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2229821..2230582) Escherichia coli LY180 16979802 YP_008565226.1 CDS LY180_10660 NC_022364.1 2230579 2231238 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2230579..2231238) Escherichia coli LY180 16979803 YP_008565227.1 CDS LY180_10665 NC_022364.1 2232454 2233701 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2232454..2233701 Escherichia coli LY180 16979804 YP_008565228.1 CDS LY180_10670 NC_022364.1 2233701 2236823 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2233701..2236823 Escherichia coli LY180 16979805 YP_008565229.1 CDS LY180_10675 NC_022364.1 2236824 2239901 D Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2236824..2239901 Escherichia coli LY180 16979806 YP_008565230.1 CDS LY180_10680 NC_022364.1 2239902 2241317 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2239902..2241317 Escherichia coli LY180 16979807 YP_008565231.1 CDS LY180_10685 NC_022364.1 2241314 2242717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction histidine-protein kinase BaeS 2241314..2242717 Escherichia coli LY180 16979808 YP_008565232.1 CDS LY180_10690 NC_022364.1 2242714 2243436 D response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2242714..2243436 Escherichia coli LY180 16979809 YP_008565233.1 CDS LY180_10695 NC_022364.1 2243627 2243959 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2243627..2243959 Escherichia coli LY180 16979810 YP_008565234.1 CDS LY180_10700 NC_022364.1 2244213 2244464 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 2244213..2244464 Escherichia coli LY180 16979811 YP_008565235.1 CDS LY180_10705 NC_022364.1 2244466 2244762 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; plasmid stabilization protein ParE 2244466..2244762 Escherichia coli LY180 16979812 YP_008565236.1 CDS LY180_10710 NC_022364.1 2244865 2246226 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 2244865..2246226 Escherichia coli LY180 16979813 YP_008565237.1 CDS LY180_10715 NC_022364.1 2246499 2246798 R in E. coli K-12 this is in prophage P2 remnant; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2246499..2246798) Escherichia coli LY180 16979814 YP_008565238.1 CDS LY180_10720 NC_022364.1 2246798 2247961 R Derived by automated computational analysis using gene prediction method: Protein Homology.; late control protein D complement(2246798..2247961) Escherichia coli LY180 16979815 YP_008565239.1 CDS LY180_10725 NC_022364.1 2247961 2248440 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein complement(2247961..2248440) Escherichia coli LY180 16979816 YP_008565240.1 CDS LY180_10730 NC_022364.1 2248455 2250902 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2248455..2250902) Escherichia coli LY180 16979817 YP_008565241.1 CDS LY180_10735 NC_022364.1 2250895 2251050 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2250895..2251050) Escherichia coli LY180 16979818 YP_008565242.1 CDS LY180_10740 NC_022364.1 2251047 2251322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2251047..2251322) Escherichia coli LY180 16979819 YP_008565243.1 CDS LY180_10745 NC_022364.1 2251379 2251897 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major tail tube protein complement(2251379..2251897) Escherichia coli LY180 16979820 YP_008565244.1 CDS LY180_10750 NC_022364.1 2251910 2253100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail sheath protein complement(2251910..2253100) Escherichia coli LY180 16979821 YP_008565245.1 CDS LY180_10755 NC_022364.1 2253160 2253753 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA invertase complement(2253160..2253753) Escherichia coli LY180 16979822 YP_008565246.1 CDS LY180_10760 NC_022364.1 2253784 2254197 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2253784..2254197 Escherichia coli LY180 16979823 YP_008565247.1 CDS LY180_10765 NC_022364.1 2254199 2254639 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2254199..2254639 Escherichia coli LY180 16979824 YP_008565248.1 CDS LY180_10770 NC_022364.1 2254611 2255204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein complement(2254611..2255204) Escherichia coli LY180 16979825 YP_008565249.1 CDS LY180_10775 NC_022364.1 2255204 2256487 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; tail protein complement(2255204..2256487) Escherichia coli LY180 16979826 YP_008565250.1 CDS LY180_10780 NC_022364.1 2256484 2257095 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2256484..2257095) Escherichia coli LY180 16979827 YP_008565251.1 CDS LY180_10785 NC_022364.1 2257088 2257996 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(2257088..2257996) Escherichia coli LY180 16979828 YP_008565252.1 CDS LY180_10790 NC_022364.1 2258001 2258348 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(2258001..2258348) Escherichia coli LY180 16979829 YP_008565253.1 CDS LY180_10795 NC_022364.1 2258345 2258980 R Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein complement(2258345..2258980) Escherichia coli LY180 16979830 YP_008565254.1 CDS LY180_10800 NC_022364.1 2259047 2259499 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2259047..2259499) Escherichia coli LY180 16979831 YP_008565255.1 CDS LY180_10805 NC_022364.1 2259492 2259959 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber protein complement(2259492..2259959) Escherichia coli LY180 16979832 YP_008565256.1 CDS LY180_10810 NC_022364.1 2259922 2260080 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysC complement(2259922..2260080) Escherichia coli LY180 16979833 YP_008565257.1 CDS LY180_10815 NC_022364.1 2260067 2260492 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2260067..2260492) Escherichia coli LY180 16979834 YP_008565258.1 CDS LY180_10820 NC_022364.1 2260480 2260905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysA complement(2260480..2260905) Escherichia coli LY180 16979835 YP_008565259.1 CDS LY180_10825 NC_022364.1 2260920 2261417 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme complement(2260920..2261417) Escherichia coli LY180 16979836 YP_008565260.1 CDS LY180_10830 NC_022364.1 2261417 2261698 R Derived by automated computational analysis using gene prediction method: Protein Homology.; holin complement(2261417..2261698) Escherichia coli LY180 16979837 YP_008565261.1 CDS LY180_10835 NC_022364.1 2261702 2261905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein complement(2261702..2261905) Escherichia coli LY180 16979838 YP_008565262.1 CDS LY180_10840 NC_022364.1 2261905 2262414 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Head completion/stabilization protein complement(2261905..2262414) Escherichia coli LY180 16979839 YP_008565263.1 CDS LY180_10845 NC_022364.1 2262514 2263257 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(2262514..2263257) Escherichia coli LY180 16979840 YP_008565264.1 CDS LY180_10850 NC_022364.1 2263261 2264334 R Derived by automated computational analysis using gene prediction method: Protein Homology.; capsid protein complement(2263261..2264334) Escherichia coli LY180 16979841 YP_008565265.1 CDS LY180_10855 NC_022364.1 2264393 2265247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; precorrin-8W decarboxylase complement(2264393..2265247) Escherichia coli LY180 16979842 YP_008565266.1 CDS LY180_10860 NC_022364.1 2265421 2267193 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 2265421..2267193 Escherichia coli LY180 16979843 YP_008565267.1 CDS LY180_10865 NC_022364.1 2267193 2268221 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Presumed portal vertex protein 2267193..2268221 Escherichia coli LY180 16979844 YP_008565268.1 CDS LY180_10870 NC_022364.1 2268845 2270278 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter complement(2268845..2270278) Escherichia coli LY180 16979845 YP_008565269.1 CDS LY180_10875 NC_022364.1 2271443 2273719 R Derived by automated computational analysis using gene prediction method: Protein Homology.; replication protein complement(2271443..2273719) Escherichia coli LY180 16979846 YP_008565270.1 CDS LY180_10880 NC_022364.1 2273709 2273984 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2273709..2273984) Escherichia coli LY180 16979847 YP_008565271.1 CDS LY180_10885 NC_022364.1 2273981 2274205 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2273981..2274205) Escherichia coli LY180 16979848 YP_008565272.1 CDS LY180_10890 NC_022364.1 2274208 2274507 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2274208..2274507) Escherichia coli LY180 16979849 YP_008565273.1 CDS LY180_10895 NC_022364.1 2274738 2275238 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2274738..2275238) Escherichia coli LY180 16979850 YP_008565274.1 CDS LY180_10900 NC_022364.1 2275235 2275405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2275235..2275405) Escherichia coli LY180 16979851 YP_008565275.1 CDS LY180_10905 NC_022364.1 2275416 2275691 R Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(2275416..2275691) Escherichia coli LY180 16979852 YP_008565276.1 CDS LY180_10910 NC_022364.1 2275813 2276112 D Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor 2275813..2276112 Escherichia coli LY180 16979853 YP_008565277.1 CDS LY180_10915 NC_022364.1 2276228 2277241 D Int; binds dsDNA; cleaves and religates DNA through a covalent phosphotyrosine intermediate; bacteriophage P2 Int mediates the site-specific recombination event leading to integration or excision of the phage genome into or out of the Escherichia coli chromosome; integrative recombination occurs between the phage attachment site attP and the bacterial attachment site attB, integrative recombination also requires E. coli IHF; excision requires IHF and the phage-encoded Cox protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 2276228..2277241 Escherichia coli LY180 16979854 YP_008565278.1 CDS LY180_10920 NC_022364.1 2277506 2277823 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2277506..2277823) Escherichia coli LY180 16979855 YP_008565279.1 CDS LY180_10925 NC_022364.1 2278229 2279128 D cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid kinase 2278229..2279128 Escherichia coli LY180 16979856 YP_008565280.1 CDS srlR NC_022364.1 2279210 2279983 R regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2279210..2279983) Escherichia coli LY180 16979857 YP_008565281.1 CDS LY180_10935 NC_022364.1 2280089 2281129 R Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactitol-1-phosphate 5-dehydrogenase complement(2280089..2281129) Escherichia coli LY180 16979858 YP_008565282.1 CDS gatC NC_022364.1 2281177 2282532 R with GatAB forms a phosphoenolpyruvate-dependent sugar phosphotransferase transporter for galactitol; subunit IIC forms the translocation channel and contains the substrate binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIC complement(2281177..2282532) Escherichia coli LY180 16979859 YP_008565283.1 CDS LY180_10945 NC_022364.1 2282536 2282820 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIB complement(2282536..2282820) Escherichia coli LY180 16979860 YP_008565284.1 CDS LY180_10950 NC_022364.1 2282851 2283303 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS galactitol transporter subunit IIA complement(2282851..2283303) Escherichia coli LY180 16979861 YP_008565285.1 CDS LY180_10955 NC_022364.1 2283313 2284575 R with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1,6-bisphosphate; subunit Z may act as a chaperone for the Y subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase complement(2283313..2284575) Escherichia coli LY180 16979862 YP_008565286.1 CDS gatY NC_022364.1 2284604 2285458 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(2284604..2285458) Escherichia coli LY180 16979863 YP_008565287.1 CDS LY180_10965 NC_022364.1 2285768 2286820 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(2285768..2286820) Escherichia coli LY180 16979864 YP_008565288.1 CDS LY180_10970 NC_022364.1 2287077 2288354 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside transporter 2287077..2288354 Escherichia coli LY180 16979865 YP_008565289.1 CDS LY180_10975 NC_022364.1 2288351 2289355 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2288351..2289355 Escherichia coli LY180 16979866 YP_008565290.1 CDS LY180_10980 NC_022364.1 2289352 2290317 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 2289352..2290317 Escherichia coli LY180 16979867 YP_008565291.1 CDS LY180_10985 NC_022364.1 2290291 2291037 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(2290291..2291037) Escherichia coli LY180 16979868 YP_008565292.1 CDS LY180_10990 NC_022364.1 2291089 2291907 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2291089..2291907) Escherichia coli LY180 16979869 YP_008565293.1 CDS LY180_10995 NC_022364.1 2291972 2292772 R catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(2291972..2292772) Escherichia coli LY180 16979870 YP_008565294.1 CDS LY180_11000 NC_022364.1 2292769 2293557 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyethylthiazole kinase complement(2292769..2293557) Escherichia coli LY180 16979871 YP_008565295.1 CDS LY180_11005 NC_022364.1 2293780 2294052 R DNA-binding; binds the RcnA promotor; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2293780..2294052) Escherichia coli LY180 16979872 YP_008565296.1 CDS LY180_11010 NC_022364.1 2294173 2294997 D membrane protein conferring nickel and cobalt resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt transporter 2294173..2294997 Escherichia coli LY180 16979873 YP_008565297.1 CDS LY180_11015 NC_022364.1 2295216 2295554 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel/cobalt homeostasis protein RcnB 2295216..2295554 Escherichia coli LY180 16979874 YP_008565298.1 CDS LY180_11020 NC_022364.1 2295636 2296670 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2295636..2296670) Escherichia coli LY180 16979875 YP_008565299.1 CDS LY180_11025 NC_022364.1 2296686 2299166 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial outer membrane usher protein complement(2296686..2299166) Escherichia coli LY180 16979876 YP_008565300.1 CDS LY180_11030 NC_022364.1 2299182 2299856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial assembly chaperone protein StcB complement(2299182..2299856) Escherichia coli LY180 16979877 YP_008565301.1 CDS LY180_11035 NC_022364.1 2299937 2300479 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2299937..2300479) Escherichia coli LY180 16979878 YP_008565302.1 CDS LY180_11040 NC_022364.1 2300772 2301053 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2300772..2301053) Escherichia coli LY180 16979879 YP_008565303.1 CDS LY180_11045 NC_022364.1 2301316 2302425 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ATPase complement(2301316..2302425) Escherichia coli LY180 16979880 YP_008565304.1 CDS metG NC_022364.1 2302557 2304590 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase 2302557..2304590 Escherichia coli LY180 16979881 YP_008565305.1 CDS LY180_11055 NC_022364.1 2304731 2308525 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2304731..2308525 Escherichia coli LY180 16979882 YP_008565306.1 CDS LY180_11060 NC_022364.1 2308535 2312167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2308535..2312167 Escherichia coli LY180 16979883 YP_008565307.1 CDS LY180_11065 NC_022364.1 2312228 2312548 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2312228..2312548 Escherichia coli LY180 16979884 YP_008565308.1 CDS LY180_11070 NC_022364.1 2312601 2312690 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2312601..2312690) Escherichia coli LY180 16979885 YP_008565309.1 CDS LY180_11075 NC_022364.1 2313209 2313298 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2313209..2313298) Escherichia coli LY180 16979886 YP_008565310.1 CDS LY180_11080 NC_022364.1 2313731 2314819 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2313731..2314819 Escherichia coli LY180 16979887 YP_008565311.1 CDS LY180_11085 NC_022364.1 2314830 2317109 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2314830..2317109 Escherichia coli LY180 16979888 YP_008565312.1 CDS LY180_11090 NC_022364.1 2317102 2318238 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2317102..2318238 Escherichia coli LY180 16979889 YP_008565313.1 CDS LY180_11095 NC_022364.1 2318235 2320235 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2318235..2320235 Escherichia coli LY180 16979890 YP_008565314.1 CDS LY180_11100 NC_022364.1 2320360 2320821 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2320360..2320821 Escherichia coli LY180 16979891 YP_008565315.1 CDS LY180_11105 NC_022364.1 2320861 2321331 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2320861..2321331) Escherichia coli LY180 16979892 YP_008565316.1 CDS LY180_11110 NC_022364.1 2321378 2322097 R unknown function; when overproduced it confers drug-resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2321378..2322097) Escherichia coli LY180 16979893 YP_008565317.1 CDS LY180_11115 NC_022364.1 2322094 2323779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor histidine kinase complement(2322094..2323779) Escherichia coli LY180 16979894 YP_008565318.1 CDS LY180_11120 NC_022364.1 2324001 2324732 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MerR family transcriptional regulator 2324001..2324732 Escherichia coli LY180 16979895 YP_008565319.1 CDS LY180_11125 NC_022364.1 2324792 2324899 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2324792..2324899 Escherichia coli LY180 16979896 YP_008565320.1 CDS LY180_11130 NC_022364.1 2324880 2325611 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease complement(2324880..2325611) Escherichia coli LY180 16979897 YP_008565321.1 CDS LY180_11135 NC_022364.1 2325616 2326542 R with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein complement(2325616..2326542) Escherichia coli LY180 16979898 YP_008565322.1 CDS LY180_11140 NC_022364.1 2326535 2327692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system permease complement(2326535..2327692) Escherichia coli LY180 16979899 YP_008565323.1 CDS LY180_11145 NC_022364.1 2327699 2328616 R Derived by automated computational analysis using gene prediction method: Protein Homology.; osmoprotectant uptake system substrate-binding protein complement(2327699..2328616) Escherichia coli LY180 16979900 YP_008565324.1 CDS LY180_11150 NC_022364.1 2328827 2331124 R catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-glucoside glucohydrolase complement(2328827..2331124) Escherichia coli LY180 16979901 YP_008565325.1 CDS LY180_11155 NC_022364.1 2331320 2333035 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-lactate dehydrogenase 2331320..2333035 Escherichia coli LY180 16979902 YP_008565326.1 CDS pbpG NC_022364.1 2333073 2334005 R specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine endopeptidase complement(2333073..2334005) Escherichia coli LY180 16979903 YP_008565327.1 CDS LY180_11165 NC_022364.1 2334179 2334766 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2334179..2334766) Escherichia coli LY180 16979904 YP_008565328.1 CDS LY180_11170 NC_022364.1 2334936 2335514 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2334936..2335514 Escherichia coli LY180 16979905 YP_008565329.1 CDS LY180_11175 NC_022364.1 2335644 2336405 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2335644..2336405) Escherichia coli LY180 16979906 YP_008565330.1 CDS LY180_11185 NC_022364.1 2338118 2338201 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 2338118..2338201 Escherichia coli LY180 16979908 YP_008565331.1 CDS LY180_11190 NC_022364.1 2338589 2339539 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase C complement(2338589..2339539) Escherichia coli LY180 16979909 YP_008565332.1 CDS LY180_11195 NC_022364.1 2339778 2340176 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2339778..2340176 Escherichia coli LY180 16979910 YP_008565333.1 CDS LY180_11200 NC_022364.1 2340173 2340868 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2340173..2340868 Escherichia coli LY180 16979911 YP_008565334.1 CDS LY180_11205 NC_022364.1 2340998 2341882 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytidine deaminase 2340998..2341882 Escherichia coli LY180 16979912 YP_008565335.1 CDS LY180_11210 NC_022364.1 2342032 2342751 D involved in vancomycin sensitivity and other barrier functions of the cell envelope; Derived by automated computational analysis using gene prediction method: Protein Homology.; vancomycin high temperature exclusion protein 2342032..2342751 Escherichia coli LY180 16979913 YP_008565336.1 CDS LY180_11215 NC_022364.1 2342754 2342993 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2342754..2342993 Escherichia coli LY180 16979914 YP_008565337.1 CDS LY180_11220 NC_022364.1 2343312 2344550 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit A 2343312..2344550 Escherichia coli LY180 16979915 YP_008565338.1 CDS LY180_11225 NC_022364.1 2344544 2345779 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropyrimidine dehydrogenase subunit B 2344544..2345779 Escherichia coli LY180 16979916 YP_008565339.1 CDS mglC NC_022364.1 2345850 2346860 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-methylgalactoside transporter complement(2345850..2346860) Escherichia coli LY180 16979917 YP_008565340.1 CDS LY180_11235 NC_022364.1 2346876 2348396 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein complement(2346876..2348396) Escherichia coli LY180 16979918 YP_008565341.1 CDS LY180_11240 NC_022364.1 2348457 2349455 R wtih MglAC is involved in the transport of beta-methylgalactoside; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-galactoside ABC transporter substrate-binding protein complement(2348457..2349455) Escherichia coli LY180 16979919 YP_008565342.1 CDS LY180_11245 NC_022364.1 2349735 2350775 R controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2349735..2350775) Escherichia coli LY180 16979920 YP_008565343.1 CDS LY180_11250 NC_022364.1 2350917 2352074 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2350917..2352074) Escherichia coli LY180 16979921 YP_008565344.1 CDS LY180_11255 NC_022364.1 2352091 2352759 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP cyclohydrolase I complement(2352091..2352759) Escherichia coli LY180 16979922 YP_008565345.1 CDS LY180_11260 NC_022364.1 2353017 2353853 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-formylglutathione hydrolase 2353017..2353853 Escherichia coli LY180 16979923 YP_008565346.1 CDS LY180_11265 NC_022364.1 2353885 2355876 R Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; catecholate siderophore receptor CirA complement(2353885..2355876) Escherichia coli LY180 16979924 YP_008565347.1 CDS LY180_11270 NC_022364.1 2356169 2357638 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine transporter complement(2356169..2357638) Escherichia coli LY180 16979925 YP_008565348.1 CDS LY180_11275 NC_022364.1 2357843 2358724 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2357843..2358724) Escherichia coli LY180 16979926 YP_008565349.1 CDS LY180_11280 NC_022364.1 2358823 2359872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2358823..2359872 Escherichia coli LY180 16979927 YP_008565350.1 CDS LY180_11285 NC_022364.1 2359946 2360803 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease V 2359946..2360803 Escherichia coli LY180 16979928 YP_008565351.1 CDS LY180_11290 NC_022364.1 2360806 2361894 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 2360806..2361894 Escherichia coli LY180 16979929 YP_008565352.1 CDS LY180_11295 NC_022364.1 2361950 2363200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease complement(2361950..2363200) Escherichia coli LY180 16979930 YP_008565353.1 CDS rihB NC_022364.1 2363300 2364241 R Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside hydrolase complement(2363300..2364241) Escherichia coli LY180 16979931 YP_008565354.1 CDS LY180_11305 NC_022364.1 2364410 2365069 D activator of nucleoside metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; Crp/Fnr family transcriptional regulator 2364410..2365069 Escherichia coli LY180 16979932 YP_008565355.1 CDS LY180_11310 NC_022364.1 2365137 2366387 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease complement(2365137..2366387) Escherichia coli LY180 16979933 YP_008565356.1 CDS LY180_11315 NC_022364.1 2366481 2367419 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine-5'-phosphate glycosidase complement(2366481..2367419) Escherichia coli LY180 16979934 YP_008565357.1 CDS LY180_11320 NC_022364.1 2367407 2368348 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pseudouridine kinase complement(2367407..2368348) Escherichia coli LY180 16979935 YP_008565358.1 CDS LY180_11325 NC_022364.1 2368772 2370463 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC complement(2368772..2370463) Escherichia coli LY180 16979936 YP_008565359.1 CDS fruK NC_022364.1 2370480 2371418 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-phosphofructokinase complement(2370480..2371418) Escherichia coli LY180 16979937 YP_008565360.1 CDS LY180_11335 NC_022364.1 2371418 2372548 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(2371418..2372548) Escherichia coli LY180 16979938 YP_008565361.1 CDS LY180_11340 NC_022364.1 2372916 2374097 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 2372916..2374097 Escherichia coli LY180 16979939 YP_008565362.1 CDS LY180_11345 NC_022364.1 2374094 2374348 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2374094..2374348) Escherichia coli LY180 16979940 YP_008565363.1 CDS LY180_11350 NC_022364.1 2374503 2375075 D Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor Ts 2374503..2375075 Escherichia coli LY180 16979941 YP_008565364.1 CDS LY180_11355 NC_022364.1 2375298 2376764 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 2375298..2376764 Escherichia coli LY180 16979942 YP_008565365.1 CDS LY180_11360 NC_022364.1 2376882 2377868 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2376882..2377868 Escherichia coli LY180 16979943 YP_008565366.1 CDS LY180_11365 NC_022364.1 2377907 2378620 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2377907..2378620 Escherichia coli LY180 16979944 YP_008565367.1 CDS LY180_11370 NC_022364.1 2379032 2379598 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endopeptidase 2379032..2379598 Escherichia coli LY180 16979945 YP_008565368.1 CDS LY180_11375 NC_022364.1 2379779 2381335 D involved in resistance to the phages N4 and lambda; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage resistance protein 2379779..2381335 Escherichia coli LY180 16979946 YP_008565369.1 CDS LY180_11380 NC_022364.1 2381417 2383231 D with YejBEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein 2381417..2383231 Escherichia coli LY180 16979947 YP_008565370.1 CDS LY180_11385 NC_022364.1 2383232 2384326 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease YejB 2383232..2384326 Escherichia coli LY180 16979948 YP_008565371.1 CDS LY180_11390 NC_022364.1 2384326 2385351 D part of the microcin C transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter permease 2384326..2385351 Escherichia coli LY180 16979949 YP_008565372.1 CDS LY180_11395 NC_022364.1 2385353 2386942 D with YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology.; microcin C ABC transporter ATP-binding protein YejF 2385353..2386942 Escherichia coli LY180 16979950 YP_008565373.1 CDS LY180_11400 NC_022364.1 2386946 2387290 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2386946..2387290) Escherichia coli LY180 16979951 YP_008565374.1 CDS LY180_11405 NC_022364.1 2387623 2388813 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(2387623..2388813) Escherichia coli LY180 16979952 YP_008565375.1 CDS LY180_11410 NC_022364.1 2388841 2389536 R catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA pseudouridylate synthase complement(2388841..2389536) Escherichia coli LY180 16979953 YP_008565376.1 CDS LY180_11415 NC_022364.1 2389685 2391445 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2389685..2391445 Escherichia coli LY180 16979954 YP_008565377.1 CDS LY180_11420 NC_022364.1 2391570 2391854 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L25 2391570..2391854 Escherichia coli LY180 16979955 YP_008565378.1 CDS LY180_11425 NC_022364.1 2391993 2393000 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoid-associated protein NdpA complement(2391993..2393000) Escherichia coli LY180 16979956 YP_008565379.1 CDS LY180_11430 NC_022364.1 2393182 2393409 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2393182..2393409 Escherichia coli LY180 16979957 YP_008565380.1 CDS LY180_11435 NC_022364.1 2393429 2395189 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2393429..2395189 Escherichia coli LY180 16979958 YP_008565381.1 CDS LY180_11455 NC_022364.1 2398355 2399002 D nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2398355..2399002 Escherichia coli LY180 16979961 YP_008565382.1 CDS LY180_11460 NC_022364.1 2399037 2400089 R cytochrome c-type biogenesis protein; involved in the attachment of heme to cytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmH complement(2399037..2400089) Escherichia coli LY180 16979962 YP_008565383.1 CDS LY180_11465 NC_022364.1 2400086 2400643 R cytochrome c-type biogenesis thioredoxin; involved in the reduction of disulfide bonds to allow heme bonding; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(2400086..2400643) Escherichia coli LY180 16979963 YP_008565384.1 CDS LY180_11470 NC_022364.1 2400640 2402583 R cytochrome c-type biogenesis protein; required for the transfer of heme to apocytochrome c; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit CcmF complement(2400640..2402583) Escherichia coli LY180 16979964 YP_008565385.1 CDS LY180_11475 NC_022364.1 2402580 2403059 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein complement(2402580..2403059) Escherichia coli LY180 16979965 YP_008565386.1 CDS LY180_11480 NC_022364.1 2403056 2403265 R is invovled in heme transfer during cytochrome c biogenesis; acts to stabilize CcmC and CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein CcmD complement(2403056..2403265) Escherichia coli LY180 16979966 YP_008565387.1 CDS LY180_11485 NC_022364.1 2403262 2403999 R with CcmABDE is involved in the transport of protoheme IX; CcmC is required for heme transfer to CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2403262..2403999) Escherichia coli LY180 16979967 YP_008565388.1 CDS LY180_11490 NC_022364.1 2404041 2404703 R with CcmABCE is involved in the transport of protoheme IX; CcmB is required for the release of holoCcmE from CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter permease complement(2404041..2404703) Escherichia coli LY180 16979968 YP_008565389.1 CDS LY180_11495 NC_022364.1 2404700 2405323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C biogenesis protein CcmA complement(2404700..2405323) Escherichia coli LY180 16979969 YP_008565390.1 CDS LY180_11500 NC_022364.1 2405336 2405938 R with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C protein NapC complement(2405336..2405938) Escherichia coli LY180 16979970 YP_008565391.1 CDS napB NC_022364.1 2405948 2406397 R small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase cytochrome C550 subunit complement(2405948..2406397) Escherichia coli LY180 16979971 YP_008565392.1 CDS napH NC_022364.1 2406394 2407257 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol dehydrogenase complement(2406394..2407257) Escherichia coli LY180 16979972 YP_008565393.1 CDS napG NC_022364.1 2407244 2407939 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol dehydrogenase complement(2407244..2407939) Escherichia coli LY180 16979973 YP_008565394.1 CDS LY180_11520 NC_022364.1 2407946 2410432 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase catalytic subunit complement(2407946..2410432) Escherichia coli LY180 16979974 YP_008565395.1 CDS LY180_11525 NC_022364.1 2410429 2410692 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate reductase complement(2410429..2410692) Escherichia coli LY180 16979975 YP_008565396.1 CDS LY180_11530 NC_022364.1 2410682 2411176 R Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin complement(2410682..2411176) Escherichia coli LY180 16979976 YP_008565397.1 CDS LY180_11535 NC_022364.1 2411585 2412073 D serine protease inhibitor, inhibits trypsin and other proteases; Derived by automated computational analysis using gene prediction method: Protein Homology.; ecotin 2411585..2412073 Escherichia coli LY180 16979977 YP_008565398.1 CDS LY180_11540 NC_022364.1 2412222 2413868 R Derived by automated computational analysis using gene prediction method: Protein Homology.; malate:quinone oxidoreductase complement(2412222..2413868) Escherichia coli LY180 16979978 YP_008565399.1 CDS LY180_11545 NC_022364.1 2414086 2415729 R efflux pump for the antibacterial peptide microcin J25; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug ABC transporter ATP-binding protein complement(2414086..2415729) Escherichia coli LY180 16979979 YP_008565400.1 CDS LY180_11550 NC_022364.1 2415805 2416455 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate-dependent dioxygenase complement(2415805..2416455) Escherichia coli LY180 16979980 YP_008565401.1 CDS LY180_11555 NC_022364.1 2416455 2417519 R regulates genes involved in the repair of alkylated DNA; repairs DNA containing 6-O-methylguanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2416455..2417519) Escherichia coli LY180 16979981 YP_008565402.1 CDS LY180_11560 NC_022364.1 2417593 2418648 R catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis lipoprotein ApbE complement(2417593..2418648) Escherichia coli LY180 16979982 YP_008565403.1 CDS LY180_11570 NC_022364.1 2420602 2423274 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2420602..2423274 Escherichia coli LY180 16979984 YP_008565404.1 CDS LY180_11575 NC_022364.1 2423291 2423941 D two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2423291..2423941 Escherichia coli LY180 16979985 YP_008565405.1 CDS LY180_11580 NC_022364.1 2424141 2426990 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2424141..2426990) Escherichia coli LY180 16979986 YP_008565406.1 CDS LY180_11585 NC_022364.1 2427265 2428041 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2427265..2428041) Escherichia coli LY180 16979987 YP_008565407.1 CDS LY180_11590 NC_022364.1 2428046 2429695 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2428046..2429695) Escherichia coli LY180 16979988 YP_008565408.1 CDS LY180_11595 NC_022364.1 2429696 2434210 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2429696..2434210) Escherichia coli LY180 16979989 YP_008565409.1 CDS LY180_11600 NC_022364.1 2434234 2434857 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2434234..2434857) Escherichia coli LY180 16979990 YP_008565410.1 CDS LY180_11605 NC_022364.1 2434854 2436542 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2434854..2436542) Escherichia coli LY180 16979991 YP_008565411.1 CDS LY180_11610 NC_022364.1 2436691 2439318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit A complement(2436691..2439318) Escherichia coli LY180 16979992 YP_008565412.1 CDS LY180_11615 NC_022364.1 2439465 2440187 D Involved in ubiquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2439465..2440187 Escherichia coli LY180 16979993 YP_008565413.1 CDS LY180_11620 NC_022364.1 2440315 2444055 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adhesin complement(2440315..2444055) Escherichia coli LY180 16979994 YP_008565414.1 CDS LY180_11625 NC_022364.1 2444745 2447030 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2444745..2447030 Escherichia coli LY180 16979995 YP_008565415.1 CDS LY180_11630 NC_022364.1 2447126 2448307 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2447126..2448307 Escherichia coli LY180 16979996 YP_008565416.1 CDS LY180_11635 NC_022364.1 2448307 2448561 D plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin 2448307..2448561 Escherichia coli LY180 16979997 YP_008565417.1 CDS LY180_11640 NC_022364.1 2448615 2449265 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2448615..2449265) Escherichia coli LY180 16979998 YP_008565418.1 CDS glpQ NC_022364.1 2449727 2450803 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerophosphodiester phosphodiesterase complement(2449727..2450803) Escherichia coli LY180 16979999 YP_008565419.1 CDS glpT NC_022364.1 2450808 2452166 R catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate transporter complement(2450808..2452166) Escherichia coli LY180 16980000 YP_008565420.1 CDS glpA NC_022364.1 2452439 2454067 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit A 2452439..2454067 Escherichia coli LY180 16980001 YP_008565421.1 CDS LY180_11660 NC_022364.1 2454057 2455316 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase subunit B 2454057..2455316 Escherichia coli LY180 16980002 YP_008565422.1 CDS glpC NC_022364.1 2455313 2456503 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sn-glycerol-3-phosphate dehydrogenase subunit C 2455313..2456503 Escherichia coli LY180 16980003 YP_008565423.1 CDS LY180_11670 NC_022364.1 2456697 2457599 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2456697..2457599 Escherichia coli LY180 16980004 YP_008565424.1 CDS LY180_11675 NC_022364.1 2457640 2458110 R catalyzes the retro-aldol cleavage of 2-keto-3-deoxy-L-rhamnonate to pyruvate and lactaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxy-L-rhamnonate aldolase complement(2457640..2458110) Escherichia coli LY180 16980005 YP_008565425.1 CDS LY180_11680 NC_022364.1 2458165 2459367 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2458165..2459367) Escherichia coli LY180 16980006 YP_008565426.1 CDS LY180_11685 NC_022364.1 2459467 2460009 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2459467..2460009) Escherichia coli LY180 16980007 YP_008565427.1 CDS LY180_11690 NC_022364.1 2460288 2460713 D catalyzes the hydrolysis of nucleoside triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphatase NudI 2460288..2460713 Escherichia coli LY180 16980008 YP_008565428.1 CDS LY180_11695 NC_022364.1 2460752 2461354 R catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II)-phosphate phosphatase complement(2460752..2461354) Escherichia coli LY180 16980009 YP_008565429.1 CDS LY180_11700 NC_022364.1 2461662 2462801 D catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase 2461662..2462801 Escherichia coli LY180 16980010 YP_008565430.1 CDS LY180_11705 NC_022364.1 2462805 2463773 D catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 2462805..2463773 Escherichia coli LY180 16980011 YP_008565431.1 CDS LY180_11710 NC_022364.1 2463773 2465755 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2463773..2465755 Escherichia coli LY180 16980012 YP_008565432.1 CDS LY180_11715 NC_022364.1 2465752 2466642 D catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase 2465752..2466642 Escherichia coli LY180 16980013 YP_008565433.1 CDS arnT NC_022364.1 2466642 2468294 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose transferase 2466642..2468294 Escherichia coli LY180 16980014 YP_008565434.1 CDS LY180_11725 NC_022364.1 2468291 2468626 D with ArnE is involved in transporting 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasmic face to the periplasmic face of the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit E 2468291..2468626 Escherichia coli LY180 16980015 YP_008565435.1 CDS LY180_11730 NC_022364.1 2468626 2469012 D with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase subunit F 2468626..2469012 Escherichia coli LY180 16980016 YP_008565436.1 CDS LY180_11735 NC_022364.1 2469006 2469272 R with BasR regulates genes involved in polymyxin resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal transduction protein PmrD complement(2469006..2469272) Escherichia coli LY180 16980017 YP_008565437.1 CDS LY180_11740 NC_022364.1 2469382 2470737 R Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoic acid--CoA ligase complement(2469382..2470737) Escherichia coli LY180 16980018 YP_008565438.1 CDS LY180_11745 NC_022364.1 2470734 2471696 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-succinylbenzoate synthase complement(2470734..2471696) Escherichia coli LY180 16980019 YP_008565439.1 CDS LY180_11750 NC_022364.1 2471696 2472553 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxynaphthoic acid synthetase complement(2471696..2472553) Escherichia coli LY180 16980020 YP_008565440.1 CDS LY180_11755 NC_022364.1 2472568 2473326 R catalyzes the formation of (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(2472568..2473326) Escherichia coli LY180 16980021 YP_008565441.1 CDS LY180_11760 NC_022364.1 2473323 2474993 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2473323..2474993) Escherichia coli LY180 16980022 YP_008565442.1 CDS LY180_11765 NC_022364.1 2475082 2476377 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isochorismate synthase complement(2475082..2476377) Escherichia coli LY180 16980023 YP_008565443.1 CDS LY180_11770 NC_022364.1 2476456 2476761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2476456..2476761) Escherichia coli LY180 16980024 YP_008565444.1 CDS LY180_11775 NC_022364.1 2476816 2477277 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(2476816..2477277) Escherichia coli LY180 16980025 YP_008565445.1 CDS LY180_11780 NC_022364.1 2477324 2478259 D RNase BN; member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease Z 2477324..2478259 Escherichia coli LY180 16980026 YP_008565446.1 CDS LY180_11785 NC_022364.1 2478447 2479667 D ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; Derived by automated computational analysis using gene prediction method: Protein Homology.; deubiquitinase 2478447..2479667 Escherichia coli LY180 16980027 YP_008565447.1 CDS LY180_11790 NC_022364.1 2480789 2481292 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2480789..2481292 Escherichia coli LY180 16980028 YP_008565448.1 CDS LY180_11795 NC_022364.1 2481359 2482816 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit N complement(2481359..2482816) Escherichia coli LY180 16980029 YP_008565449.1 CDS LY180_11800 NC_022364.1 2482823 2484352 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit M complement(2482823..2484352) Escherichia coli LY180 16980030 YP_008565450.1 CDS LY180_11805 NC_022364.1 2484516 2486357 R Catalyzes the transfer of electrons from NADH to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit L complement(2484516..2486357) Escherichia coli LY180 16980031 YP_008565451.1 CDS LY180_11810 NC_022364.1 2486354 2486656 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit K complement(2486354..2486656) Escherichia coli LY180 16980032 YP_008565452.1 CDS LY180_11815 NC_022364.1 2486653 2487207 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit J complement(2486653..2487207) Escherichia coli LY180 16980033 YP_008565453.1 CDS LY180_11820 NC_022364.1 2487219 2487761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit I complement(2487219..2487761) Escherichia coli LY180 16980034 YP_008565454.1 CDS LY180_11825 NC_022364.1 2487776 2488753 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit H complement(2487776..2488753) Escherichia coli LY180 16980035 YP_008565455.1 CDS LY180_11830 NC_022364.1 2488750 2491476 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit G complement(2488750..2491476) Escherichia coli LY180 16980036 YP_008565456.1 CDS LY180_11835 NC_022364.1 2491529 2492866 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit F complement(2491529..2492866) Escherichia coli LY180 16980037 YP_008565457.1 CDS LY180_11840 NC_022364.1 2492863 2493363 R Catalyzes the transfer of electrons from NADH to quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit E complement(2492863..2493363) Escherichia coli LY180 16980038 YP_008565458.1 CDS LY180_11845 NC_022364.1 2493366 2495168 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(2493366..2495168) Escherichia coli LY180 16980039 YP_008565459.1 CDS LY180_11850 NC_022364.1 2495262 2495924 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH dehydrogenase subunit B complement(2495262..2495924) Escherichia coli LY180 16980040 YP_008565460.1 CDS LY180_11855 NC_022364.1 2495940 2496383 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:ubiquinone oxidoreductase subunit A complement(2495940..2496383) Escherichia coli LY180 16980041 YP_008565461.1 CDS LY180_11860 NC_022364.1 2497014 2497952 R involved in the regulation of genes involved in flagella synthesis, motility and chemotaxis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2497014..2497952) Escherichia coli LY180 16980042 YP_008565462.1 CDS LY180_11865 NC_022364.1 2498872 2500089 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminotransferase AlaT 2498872..2500089 Escherichia coli LY180 16980043 YP_008565463.1 CDS LY180_11870 NC_022364.1 2500173 2500772 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5'-nucleotidase 2500173..2500772 Escherichia coli LY180 16980044 YP_008565464.1 CDS LY180_11875 NC_022364.1 2500831 2502663 R Derived by automated computational analysis using gene prediction method: Protein Homology.; citrate transporter complement(2500831..2502663) Escherichia coli LY180 16980045 YP_008565465.1 CDS LY180_11880 NC_022364.1 2502750 2503400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatase complement(2502750..2503400) Escherichia coli LY180 16980046 YP_008565466.1 CDS LY180_11885 NC_022364.1 2503411 2503905 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2503411..2503905) Escherichia coli LY180 16980047 YP_008565467.1 CDS LY180_11890 NC_022364.1 2503988 2504443 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2503988..2504443) Escherichia coli LY180 16980048 YP_008565468.1 CDS LY180_11895 NC_022364.1 2504512 2504643 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2504512..2504643) Escherichia coli LY180 16980049 YP_008565469.1 CDS LY180_11905 NC_022364.1 2506156 2508300 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate acetyltransferase 2506156..2508300 Escherichia coli LY180 16980051 YP_008565470.1 CDS LY180_11910 NC_022364.1 2508490 2510010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2508490..2510010 Escherichia coli LY180 16980052 YP_008565471.1 CDS LY180_11915 NC_022364.1 2510043 2510585 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NUDIX hydrolase complement(2510043..2510585) Escherichia coli LY180 16980053 YP_008565472.1 CDS LY180_11920 NC_022364.1 2510643 2511194 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphodiesterase complement(2510643..2511194) Escherichia coli LY180 16980054 YP_008565473.1 CDS LY180_11925 NC_022364.1 2511250 2511894 R catalyzes the formation of 2,4-dinitrophenyl-S-glutathione from 1-chloro-2,4-dinitrobenzene and glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(2511250..2511894) Escherichia coli LY180 16980055 YP_008565474.1 CDS LY180_11930 NC_022364.1 2512030 2512677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GSH-dependent disulfide bond oxidoreductase 2512030..2512677 Escherichia coli LY180 16980056 YP_008565475.1 CDS folX NC_022364.1 2512734 2513096 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2512734..2513096 Escherichia coli LY180 16980057 YP_008565476.1 CDS LY180_11940 NC_022364.1 2513117 2514010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; epimerase 2513117..2514010 Escherichia coli LY180 16980058 YP_008565477.1 CDS LY180_11945 NC_022364.1 2514058 2514948 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(2514058..2514948) Escherichia coli LY180 16980059 YP_008565478.1 CDS glnQ NC_022364.1 2515145 2515918 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(2515145..2515918) Escherichia coli LY180 16980060 YP_008565479.1 CDS LY180_11955 NC_022364.1 2515926 2516642 R with HisJPQ is involved in transport of histidine, lysine, arginine and ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisM complement(2515926..2516642) Escherichia coli LY180 16980061 YP_008565480.1 CDS LY180_11960 NC_022364.1 2516639 2517325 R with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine/lysine/arginine/ornithine ABC transporter permease HisQ complement(2516639..2517325) Escherichia coli LY180 16980062 YP_008565481.1 CDS LY180_11965 NC_022364.1 2517415 2518197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter complement(2517415..2518197) Escherichia coli LY180 16980063 YP_008565482.1 CDS LY180_11970 NC_022364.1 2518418 2519200 R with HisPMQ is involved in the transport of histidine; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(2518418..2519200) Escherichia coli LY180 16980064 YP_008565483.1 CDS LY180_11975 NC_022364.1 2519466 2520035 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2519466..2520035) Escherichia coli LY180 16980065 YP_008565484.1 CDS LY180_11980 NC_022364.1 2520130 2521647 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; amidophosphoribosyltransferase complement(2520130..2521647) Escherichia coli LY180 16980066 YP_008565485.1 CDS LY180_11985 NC_022364.1 2521684 2522172 R membrane protein required for colicin V production; Derived by automated computational analysis using gene prediction method: Protein Homology.; colicin V production protein complement(2521684..2522172) Escherichia coli LY180 16980067 YP_008565486.1 CDS LY180_11990 NC_022364.1 2522431 2523093 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DedD complement(2522431..2523093) Escherichia coli LY180 16980068 YP_008565487.1 CDS LY180_11995 NC_022364.1 2523083 2524351 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2523083..2524351) Escherichia coli LY180 16980069 YP_008565488.1 CDS LY180_12000 NC_022364.1 2524421 2525335 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase subunit beta complement(2524421..2525335) Escherichia coli LY180 16980070 YP_008565489.1 CDS LY180_12005 NC_022364.1 2525491 2526150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2525491..2526150) Escherichia coli LY180 16980071 YP_008565490.1 CDS truA NC_022364.1 2526233 2527045 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase A complement(2526233..2527045) Escherichia coli LY180 16980072 YP_008565491.1 CDS LY180_12015 NC_022364.1 2527045 2528058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; semialdehyde dehydrogenase complement(2527045..2528058) Escherichia coli LY180 16980073 YP_008565492.1 CDS LY180_12020 NC_022364.1 2528124 2529260 R catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; erythronate-4-phosphate dehydrogenase complement(2528124..2529260) Escherichia coli LY180 16980074 YP_008565493.1 CDS flk NC_022364.1 2529359 2530354 D in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; flagella biosynthesis regulator 2529359..2530354 Escherichia coli LY180 16980075 YP_008565494.1 CDS LY180_12030 NC_022364.1 2530351 2531529 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(2530351..2531529) Escherichia coli LY180 16980076 YP_008565495.1 CDS LY180_12035 NC_022364.1 2531840 2533060 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-oxoacyl-ACP synthase complement(2531840..2533060) Escherichia coli LY180 16980077 YP_008565496.1 CDS mnmC NC_022364.1 2533219 2535225 D 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 2533219..2535225 Escherichia coli LY180 16980078 YP_008565497.1 CDS LY180_12045 NC_022364.1 2535346 2535624 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2535346..2535624) Escherichia coli LY180 16980079 YP_008565498.1 CDS LY180_12050 NC_022364.1 2535658 2536206 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2535658..2536206) Escherichia coli LY180 16980080 YP_008565499.1 CDS LY180_12055 NC_022364.1 2536206 2537015 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2536206..2537015) Escherichia coli LY180 16980081 YP_008565500.1 CDS mepA NC_022364.1 2537015 2537839 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-insensitive murein endopeptidase complement(2537015..2537839) Escherichia coli LY180 16980082 YP_008565501.1 CDS LY180_12065 NC_022364.1 2537843 2538928 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate synthase complement(2537843..2538928) Escherichia coli LY180 16980083 YP_008565502.1 CDS LY180_12070 NC_022364.1 2538963 2539895 R involved in methylation of ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2538963..2539895) Escherichia coli LY180 16980084 YP_008565503.1 CDS LY180_12075 NC_022364.1 2540061 2540612 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase S10 2540061..2540612 Escherichia coli LY180 16980085 YP_008565504.1 CDS LY180_12080 NC_022364.1 2540734 2541606 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2540734..2541606) Escherichia coli LY180 16980086 YP_008565505.1 CDS LY180_12085 NC_022364.1 2541593 2542117 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2541593..2542117) Escherichia coli LY180 16980087 YP_008565506.1 CDS LY180_12090 NC_022364.1 2542114 2542584 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteE complement(2542114..2542584) Escherichia coli LY180 16980088 YP_008565507.1 CDS LY180_12095 NC_022364.1 2542581 2543129 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2542581..2543129) Escherichia coli LY180 16980089 YP_008565508.1 CDS LY180_12100 NC_022364.1 2543104 2543856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StfD complement(2543104..2543856) Escherichia coli LY180 16980090 YP_008565509.1 CDS LY180_12105 NC_022364.1 2543876 2546518 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein SteB complement(2543876..2546518) Escherichia coli LY180 16980091 YP_008565510.1 CDS LY180_12110 NC_022364.1 2546600 2547163 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(2546600..2547163) Escherichia coli LY180 16980092 YP_008565511.1 CDS LY180_12115 NC_022364.1 2547838 2548323 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidine phosphatase complement(2547838..2548323) Escherichia coli LY180 16980093 YP_008565512.1 CDS fadJ NC_022364.1 2548526 2550670 R multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fatty-acid oxidation protein subunit alpha complement(2548526..2550670) Escherichia coli LY180 16980094 YP_008565513.1 CDS fadI NC_022364.1 2550670 2551980 R FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(2550670..2551980) Escherichia coli LY180 16980095 YP_008565514.1 CDS LY180_12130 NC_022364.1 2552160 2552444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2552160..2552444) Escherichia coli LY180 16980096 YP_008565515.1 CDS LY180_12135 NC_022364.1 2552816 2554156 D Derived by automated computational analysis using gene prediction method: Protein Homology.; long-chain fatty acid outer membrane transporter 2552816..2554156 Escherichia coli LY180 16980097 YP_008565516.1 CDS LY180_12140 NC_022364.1 2554521 2555579 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2554521..2555579 Escherichia coli LY180 16980098 YP_008565517.1 CDS LY180_12145 NC_022364.1 2555761 2556516 R involved in maintaining OM lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2555761..2556516) Escherichia coli LY180 16980099 YP_008565518.1 CDS LY180_12150 NC_022364.1 2556810 2557742 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2556810..2557742 Escherichia coli LY180 16980100 YP_008565519.1 CDS LY180_12160 NC_022364.1 2558334 2559581 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(2558334..2559581) Escherichia coli LY180 16980102 YP_008565520.1 CDS LY180_12165 NC_022364.1 2559653 2560567 R phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoimidazole riboside kinase complement(2559653..2560567) Escherichia coli LY180 16980103 YP_008565521.1 CDS LY180_12170 NC_022364.1 2560783 2562216 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl hydrolase family 32 2560783..2562216 Escherichia coli LY180 16980104 YP_008565522.1 CDS LY180_12175 NC_022364.1 2562224 2563282 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sucrose operon repressor complement(2562224..2563282) Escherichia coli LY180 16980105 YP_008565523.1 CDS LY180_12180 NC_022364.1 2563450 2563668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2563450..2563668 Escherichia coli LY180 16980106 YP_008565524.1 CDS LY180_12185 NC_022364.1 2563686 2565014 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-serine dehydratase 2563686..2565014 Escherichia coli LY180 16980107 YP_008565525.1 CDS LY180_12190 NC_022364.1 2565191 2566399 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2565191..2566399 Escherichia coli LY180 16980108 YP_008565526.1 CDS emrB NC_022364.1 2566460 2567998 R multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B complement(2566460..2567998) Escherichia coli LY180 16980109 YP_008565527.1 CDS LY180_12200 NC_022364.1 2567998 2569161 R with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(2567998..2569161) Escherichia coli LY180 16980110 YP_008565528.1 CDS LY180_12205 NC_022364.1 2569577 2570191 D response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 2569577..2570191 Escherichia coli LY180 16980111 YP_008565529.1 CDS LY180_12210 NC_022364.1 2570196 2573789 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 2570196..2573789 Escherichia coli LY180 16980112 YP_008565530.1 CDS LY180_12215 NC_022364.1 2573845 2574990 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CoA-transferase complement(2573845..2574990) Escherichia coli LY180 16980113 YP_008565531.1 CDS LY180_12220 NC_022364.1 2575064 2576008 R member of the AEC family of auxin efflux transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(2575064..2576008) Escherichia coli LY180 16980114 YP_008565532.1 CDS LY180_12225 NC_022364.1 2576078 2576998 R catalyzes the formation of formyl-CoA from oxalyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxalyl-CoA decarboxylase complement(2576078..2576998) Escherichia coli LY180 16980115 YP_008565533.1 CDS LY180_12230 NC_022364.1 2576973 2577911 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2576973..2577911) Escherichia coli LY180 16980116 YP_008565534.1 CDS LY180_12235 NC_022364.1 2578121 2579110 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; oxalyl-CoA decarboxylase complement(2578121..2579110) Escherichia coli LY180 16980117 YP_008565535.1 CDS LY180_12240 NC_022364.1 2579164 2580414 R catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; formyl-CoA transferase complement(2579164..2580414) Escherichia coli LY180 16980118 YP_008565536.1 CDS LY180_12245 NC_022364.1 2580927 2581559 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2580927..2581559) Escherichia coli LY180 16980119 YP_008565537.1 CDS LY180_12250 NC_022364.1 2581855 2582130 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2581855..2582130 Escherichia coli LY180 16980120 YP_008565538.1 CDS LY180_12255 NC_022364.1 2582207 2582449 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2582207..2582449) Escherichia coli LY180 16980121 YP_008565539.1 CDS LY180_12260 NC_022364.1 2582802 2583722 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipid A biosynthesis palmitoleoyl acyltransferase 2582802..2583722 Escherichia coli LY180 16980122 YP_008565540.1 CDS LY180_12265 NC_022364.1 2584214 2585452 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate aminotransferase complement(2584214..2585452) Escherichia coli LY180 16980123 YP_008565541.1 CDS LY180_12270 NC_022364.1 2585616 2585777 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2585616..2585777) Escherichia coli LY180 16980124 YP_008565542.1 CDS LY180_12275 NC_022364.1 2585829 2587526 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2585829..2587526 Escherichia coli LY180 16980125 YP_008565543.1 CDS LY180_12280 NC_022364.1 2587541 2588275 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LytTR family transcriptional regulator 2587541..2588275 Escherichia coli LY180 16980126 YP_008565544.1 CDS LY180_12285 NC_022364.1 2588288 2589145 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 2588288..2589145 Escherichia coli LY180 16980127 YP_008565545.1 CDS LY180_12290 NC_022364.1 2589148 2591643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(2589148..2591643) Escherichia coli LY180 16980128 YP_008565546.1 CDS LY180_12295 NC_022364.1 2591668 2592705 R metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoaminopeptidase complement(2591668..2592705) Escherichia coli LY180 16980129 YP_008565547.1 CDS LY180_12300 NC_022364.1 2592705 2593790 R Xaa-Pro aminopeptidase; limited methionine aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase complement(2592705..2593790) Escherichia coli LY180 16980130 YP_008565548.1 CDS LY180_12305 NC_022364.1 2593805 2595052 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIC complement(2593805..2595052) Escherichia coli LY180 16980131 YP_008565549.1 CDS LY180_12310 NC_022364.1 2595074 2595400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB complement(2595074..2595400) Escherichia coli LY180 16980132 YP_008565550.1 CDS glk NC_022364.1 2595619 2596584 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucokinase complement(2595619..2596584) Escherichia coli LY180 16980133 YP_008565551.1 CDS LY180_12320 NC_022364.1 2596788 2598044 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ion channel protein 2596788..2598044 Escherichia coli LY180 16980134 YP_008565552.1 CDS LY180_12325 NC_022364.1 2598159 2598485 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2598159..2598485 Escherichia coli LY180 16980135 YP_008565553.1 CDS LY180_12330 NC_022364.1 2598626 2599864 R Derived by automated computational analysis using gene prediction method: Protein Homology.; manganese transporter complement(2598626..2599864) Escherichia coli LY180 16980136 YP_008565554.1 CDS LY180_12335 NC_022364.1 2600200 2601402 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 2600200..2601402 Escherichia coli LY180 16980137 YP_008565555.1 CDS LY180_12340 NC_022364.1 2601452 2603641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2601452..2603641) Escherichia coli LY180 16980138 YP_008565556.1 CDS LY180_12355 NC_022364.1 2604261 2604620 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2604261..2604620 Escherichia coli LY180 16980141 YP_008565557.1 CDS LY180_12360 NC_022364.1 2604622 2605014 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2604622..2605014 Escherichia coli LY180 16980142 YP_008565558.1 CDS gltX NC_022364.1 2605066 2606481 R catalyzes a two-step reaction, first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaminyl-tRNA synthetase complement(2605066..2606481) Escherichia coli LY180 16980143 YP_008565559.1 CDS LY180_12390 NC_022364.1 2607413 2607754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein flxA 2607413..2607754 Escherichia coli LY180 16980148 YP_008565560.1 CDS LY180_12395 NC_022364.1 2607745 2608671 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(2607745..2608671) Escherichia coli LY180 16980149 YP_008565561.1 CDS LY180_12400 NC_022364.1 2608761 2609759 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2608761..2609759 Escherichia coli LY180 16980150 YP_008565562.1 CDS LY180_12405 NC_022364.1 2609756 2609974 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2609756..2609974) Escherichia coli LY180 16980151 YP_008565563.1 CDS ligA NC_022364.1 2609976 2611991 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent DNA ligase LigA complement(2609976..2611991) Escherichia coli LY180 16980152 YP_008565564.1 CDS LY180_12415 NC_022364.1 2612062 2613048 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein ZipA complement(2612062..2613048) Escherichia coli LY180 16980153 YP_008565565.1 CDS LY180_12420 NC_022364.1 2613278 2614039 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter 2613278..2614039 Escherichia coli LY180 16980154 YP_008565566.1 CDS LY180_12425 NC_022364.1 2614224 2615195 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase A 2614224..2615195 Escherichia coli LY180 16980155 YP_008565567.1 CDS LY180_12430 NC_022364.1 2615579 2615836 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter 2615579..2615836 Escherichia coli LY180 16980156 YP_008565568.1 CDS LY180_12435 NC_022364.1 2615881 2617608 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase 2615881..2617608 Escherichia coli LY180 16980157 YP_008565569.1 CDS LY180_12440 NC_022364.1 2617649 2618158 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA 2617649..2618158 Escherichia coli LY180 16980158 YP_008565570.1 CDS pdxK NC_022364.1 2618200 2619051 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxymethylpyrimidine kinase complement(2618200..2619051) Escherichia coli LY180 16980159 YP_008565571.1 CDS LY180_12450 NC_022364.1 2619156 2619524 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2619156..2619524 Escherichia coli LY180 16980160 YP_008565572.1 CDS cysM NC_022364.1 2619527 2620438 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine synthase B complement(2619527..2620438) Escherichia coli LY180 16980161 YP_008565573.1 CDS LY180_12460 NC_022364.1 2620572 2621669 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate ABC transporter ATP-binding protein complement(2620572..2621669) Escherichia coli LY180 16980162 YP_008565574.1 CDS cysW NC_022364.1 2621659 2622534 R Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter permease subunit complement(2621659..2622534) Escherichia coli LY180 16980163 YP_008565575.1 CDS LY180_12470 NC_022364.1 2622534 2623367 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate/thiosulfate transporter subunit complement(2622534..2623367) Escherichia coli LY180 16980164 YP_008565576.1 CDS LY180_12475 NC_022364.1 2623367 2624383 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate transporter subunit complement(2623367..2624383) Escherichia coli LY180 16980165 YP_008565577.1 CDS LY180_12480 NC_022364.1 2624554 2625345 R Derived by automated computational analysis using gene prediction method: Protein Homology.; short-chain dehydrogenase complement(2624554..2625345) Escherichia coli LY180 16980166 YP_008565578.1 CDS LY180_12485 NC_022364.1 2625474 2626331 R repressor for murPQ; N-acetylmuramic acid 6-phosphate inducible; Derived by automated computational analysis using gene prediction method: Protein Homology.; RpiR family transcriptional regulator complement(2625474..2626331) Escherichia coli LY180 16980167 YP_008565579.1 CDS murQ NC_022364.1 2626495 2627391 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramic acid-6-phosphate etherase 2626495..2627391 Escherichia coli LY180 16980168 YP_008565580.1 CDS murP NC_022364.1 2627395 2628819 D belongs to PEP-dependent PTS system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; requires crr-encoded enzyme IIA-glucose component; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylmuramic acid transporter subunit IIBC 2627395..2628819 Escherichia coli LY180 16980169 YP_008565581.1 CDS LY180_12500 NC_022364.1 2628824 2630128 D Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 2628824..2630128 Escherichia coli LY180 16980170 YP_008565582.1 CDS LY180_12505 NC_022364.1 2630186 2631085 R Derived by automated computational analysis using gene prediction method: Protein Homology.; deferrochelatase/peroxidase YfeX complement(2630186..2631085) Escherichia coli LY180 16980171 YP_008565583.1 CDS LY180_12510 NC_022364.1 2631181 2631756 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RpoE-regulated lipoprotein complement(2631181..2631756) Escherichia coli LY180 16980172 YP_008565584.1 CDS LY180_12515 NC_022364.1 2631817 2632266 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2631817..2632266) Escherichia coli LY180 16980173 YP_008565585.1 CDS LY180_12520 NC_022364.1 2632253 2632678 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(2632253..2632678) Escherichia coli LY180 16980174 YP_008565586.1 CDS LY180_12525 NC_022364.1 2632892 2633761 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 2632892..2633761 Escherichia coli LY180 16980175 YP_008565587.1 CDS LY180_12530 NC_022364.1 2633765 2634664 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 2633765..2634664 Escherichia coli LY180 16980176 YP_008565588.1 CDS LY180_12535 NC_022364.1 2634670 2635722 R activates the transcription of the ethanolamine utilization operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2634670..2635722) Escherichia coli LY180 16980177 YP_008565589.1 CDS LY180_12540 NC_022364.1 2635768 2636268 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2635768..2636268) Escherichia coli LY180 16980178 YP_008565590.1 CDS LY180_12545 NC_022364.1 2636281 2636940 R carboxysome structural protein involved in ethanolamine utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutL complement(2636281..2636940) Escherichia coli LY180 16980179 YP_008565591.1 CDS LY180_12550 NC_022364.1 2636950 2637837 R catalyzes the formation of acetaldehyde from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia-lyase small subunit complement(2636950..2637837) Escherichia coli LY180 16980180 YP_008565592.1 CDS LY180_12555 NC_022364.1 2637858 2639219 R with EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine ammonia lyase large subunit complement(2637858..2639219) Escherichia coli LY180 16980181 YP_008565593.1 CDS eutA NC_022364.1 2639231 2640634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutA complement(2639231..2640634) Escherichia coli LY180 16980182 YP_008565594.1 CDS LY180_12565 NC_022364.1 2640631 2641857 R may be involved in the transport of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutH complement(2640631..2641857) Escherichia coli LY180 16980183 YP_008565595.1 CDS LY180_12570 NC_022364.1 2641974 2643161 R aldehyde reductase; catalyzes the conversion of acetaldehyde to ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanol dehydrogenase complement(2641974..2643161) Escherichia coli LY180 16980184 YP_008565596.1 CDS LY180_12575 NC_022364.1 2643151 2643987 R possible chaperonin; may be involved in the assembly of the carboxysome; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutJ complement(2643151..2643987) Escherichia coli LY180 16980185 YP_008565597.1 CDS LY180_12580 NC_022364.1 2643998 2645401 R ethanolamine utilization protein; catalyzes the formation of acetyl-CoA from acetaldehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(2643998..2645401) Escherichia coli LY180 16980186 YP_008565598.1 CDS LY180_12585 NC_022364.1 2645413 2645700 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine catabolic microcompartment shell protein EutN complement(2645413..2645700) Escherichia coli LY180 16980187 YP_008565599.1 CDS LY180_12590 NC_022364.1 2645807 2646142 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2645807..2646142) Escherichia coli LY180 16980188 YP_008565600.1 CDS LY180_12595 NC_022364.1 2646139 2647155 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransacetylase complement(2646139..2647155) Escherichia coli LY180 16980189 YP_008565601.1 CDS LY180_12600 NC_022364.1 2647152 2647955 R catalyzes the conversion of cob(I)yrinic acid a,c-diamide to adenosylcob(III)yrinic acid a,c-diamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization cobalamin adenosyltransferase complement(2647152..2647955) Escherichia coli LY180 16980190 YP_008565602.1 CDS LY180_12605 NC_022364.1 2647952 2648653 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutQ complement(2647952..2648653) Escherichia coli LY180 16980191 YP_008565603.1 CDS LY180_12610 NC_022364.1 2648628 2649107 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ethanolamine utilization protein EutP complement(2648628..2649107) Escherichia coli LY180 16980192 YP_008565604.1 CDS LY180_12615 NC_022364.1 2649120 2649455 R ethanolamine utilization protein; involved in the degredation of ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxysome shell protein complement(2649120..2649455) Escherichia coli LY180 16980193 YP_008565605.1 CDS LY180_12620 NC_022364.1 2649748 2652027 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malic enzyme complement(2649748..2652027) Escherichia coli LY180 16980194 YP_008565606.1 CDS LY180_12625 NC_022364.1 2652316 2653266 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transaldolase 2652316..2653266 Escherichia coli LY180 16980195 YP_008565607.1 CDS LY180_12630 NC_022364.1 2653286 2655289 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase 2653286..2655289 Escherichia coli LY180 16980196 YP_008565608.1 CDS LY180_12640 NC_022364.1 2656554 2657129 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GDP-mannose pyrophosphatase NudK complement(2656554..2657129) Escherichia coli LY180 16980198 YP_008565609.1 CDS LY180_12645 NC_022364.1 2657197 2659176 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase Fe-S binding subunit complement(2657197..2659176) Escherichia coli LY180 16980199 YP_008565610.1 CDS LY180_12650 NC_022364.1 2659382 2661082 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrate/nitrite sensor protein NarQ 2659382..2661082 Escherichia coli LY180 16980200 YP_008565611.1 CDS LY180_12655 NC_022364.1 2661246 2664359 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2661246..2664359 Escherichia coli LY180 16980201 YP_008565612.1 CDS LY180_12660 NC_022364.1 2664898 2665254 D Derived by automated computational analysis using gene prediction method: Protein Homology.; reductase 2664898..2665254 Escherichia coli LY180 16980202 YP_008565613.1 CDS LY180_12665 NC_022364.1 2665258 2666385 D Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyl-diaminopimelate desuccinylase 2665258..2666385 Escherichia coli LY180 16980203 YP_008565614.1 CDS LY180_12670 NC_022364.1 2666413 2666613 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2666413..2666613 Escherichia coli LY180 16980204 YP_008565615.1 CDS LY180_12675 NC_022364.1 2666694 2667392 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(2666694..2667392) Escherichia coli LY180 16980205 YP_008565616.1 CDS LY180_12680 NC_022364.1 2667466 2669481 R cetylates the wobble base C34 of the elongation-specific methionine tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine tRNA cytidine acetyltransferase complement(2667466..2669481) Escherichia coli LY180 16980206 YP_008565617.1 CDS LY180_12685 NC_022364.1 2669496 2670359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2669496..2670359) Escherichia coli LY180 16980207 YP_008565618.1 CDS LY180_12690 NC_022364.1 2670506 2670904 R stability determinant protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pirin complement(2670506..2670904) Escherichia coli LY180 16980208 YP_008565619.1 CDS LY180_12695 NC_022364.1 2670904 2671170 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; antitoxin complement(2670904..2671170) Escherichia coli LY180 16980209 YP_008565620.1 CDS LY180_12700 NC_022364.1 2671286 2671999 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2671286..2671999) Escherichia coli LY180 16980210 YP_008565621.1 CDS LY180_12705 NC_022364.1 2672212 2673246 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein complement(2672212..2673246) Escherichia coli LY180 16980211 YP_008565622.1 CDS LY180_12710 NC_022364.1 2673263 2674141 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydrodipicolinate synthase complement(2673263..2674141) Escherichia coli LY180 16980212 YP_008565623.1 CDS gcvR NC_022364.1 2674287 2674859 D negative transcriptional regulator of the gcvTHP operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system regulatory protein 2674287..2674859 Escherichia coli LY180 16980213 YP_008565624.1 CDS bcp NC_022364.1 2674859 2675329 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin-dependent thiol peroxidase 2674859..2675329 Escherichia coli LY180 16980214 YP_008565625.1 CDS LY180_12725 NC_022364.1 2675582 2676199 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 2 2675582..2676199 Escherichia coli LY180 16980215 YP_008565626.1 CDS LY180_12730 NC_022364.1 2676199 2678217 D catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 3 2676199..2678217 Escherichia coli LY180 16980216 YP_008565627.1 CDS hycD NC_022364.1 2678228 2679175 D formate hydrogenlyase subunit 4; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 membrane subunit 2678228..2679175 Escherichia coli LY180 16980217 YP_008565628.1 CDS LY180_12740 NC_022364.1 2679192 2680631 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 2679192..2680631 Escherichia coli LY180 16980218 YP_008565629.1 CDS hyfE NC_022364.1 2680643 2681293 D interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase-4 subunit E 2680643..2681293 Escherichia coli LY180 16980219 YP_008565630.1 CDS LY180_12750 NC_022364.1 2681298 2682878 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2681298..2682878 Escherichia coli LY180 16980220 YP_008565631.1 CDS hycE NC_022364.1 2682868 2684583 D formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 large subunit 2682868..2684583 Escherichia coli LY180 16980221 YP_008565632.1 CDS LY180_12760 NC_022364.1 2684593 2685132 D probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far; Derived by automated computational analysis using gene prediction method: Protein Homology.; (4Fe-4S)-binding protein 2684593..2685132 Escherichia coli LY180 16980222 YP_008565633.1 CDS LY180_12765 NC_022364.1 2685879 2686292 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase maturation protein HycH 2685879..2686292 Escherichia coli LY180 16982291 YP_008565634.1 CDS LY180_12770 NC_022364.1 2686322 2688334 D regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2686322..2688334 Escherichia coli LY180 16980224 YP_008565635.1 CDS LY180_12775 NC_022364.1 2688356 2689204 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate transporter 2688356..2689204 Escherichia coli LY180 16980225 YP_008565636.1 CDS LY180_12780 NC_022364.1 2689242 2690303 R Derived by automated computational analysis using gene prediction method: Protein Homology.; permase complement(2689242..2690303) Escherichia coli LY180 16980226 YP_008565637.1 CDS LY180_12785 NC_022364.1 2690516 2691979 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2690516..2691979 Escherichia coli LY180 16980227 YP_008565638.1 CDS LY180_12790 NC_022364.1 2692000 2692359 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 2692000..2692359 Escherichia coli LY180 16980228 YP_008565639.1 CDS LY180_12795 NC_022364.1 2692497 2693243 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication initiation factor complement(2692497..2693243) Escherichia coli LY180 16980229 YP_008565640.1 CDS LY180_12800 NC_022364.1 2693293 2694582 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil transporter complement(2693293..2694582) Escherichia coli LY180 16980230 YP_008565641.1 CDS upp NC_022364.1 2694668 2695294 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil phosphoribosyltransferase complement(2694668..2695294) Escherichia coli LY180 16980231 YP_008565642.1 CDS LY180_12810 NC_022364.1 2695619 2696656 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylaminoimidazole synthetase 2695619..2696656 Escherichia coli LY180 16980232 YP_008565643.1 CDS purN NC_022364.1 2696656 2697294 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylglycinamide formyltransferase 2696656..2697294 Escherichia coli LY180 16980233 YP_008565644.1 CDS LY180_12820 NC_022364.1 2697465 2699531 D Derived by automated computational analysis using gene prediction method: Protein Homology.; polyphosphate kinase 2697465..2699531 Escherichia coli LY180 16980234 YP_008565645.1 CDS LY180_12825 NC_022364.1 2699536 2701077 D Derived by automated computational analysis using gene prediction method: Protein Homology.; exopolyphosphatase 2699536..2701077 Escherichia coli LY180 16980235 YP_008565646.1 CDS LY180_12830 NC_022364.1 2701116 2703359 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(2701116..2703359) Escherichia coli LY180 16980236 YP_008565647.1 CDS LY180_12835 NC_022364.1 2703541 2703693 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2703541..2703693) Escherichia coli LY180 16980237 YP_008565648.1 CDS LY180_12840 NC_022364.1 2703711 2703902 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2703711..2703902 Escherichia coli LY180 16980238 YP_008565649.1 CDS LY180_12845 NC_022364.1 2704213 2704731 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2704213..2704731 Escherichia coli LY180 16980239 YP_008565650.1 CDS LY180_12850 NC_022364.1 2704747 2705286 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2704747..2705286 Escherichia coli LY180 16980240 YP_008565651.1 CDS guaA NC_022364.1 2705381 2706958 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; GMP synthase complement(2705381..2706958) Escherichia coli LY180 16980241 YP_008565652.1 CDS LY180_12860 NC_022364.1 2707027 2708538 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine 5'-monophosphate dehydrogenase complement(2707027..2708538) Escherichia coli LY180 16980242 YP_008565653.1 CDS xseA NC_022364.1 2708655 2710025 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; exodeoxyribonuclease VII large subunit 2708655..2710025 Escherichia coli LY180 16980243 YP_008565654.1 CDS LY180_12870 NC_022364.1 2710022 2710237 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2710022..2710237) Escherichia coli LY180 16980244 YP_008565655.1 CDS LY180_12875 NC_022364.1 2710306 2711805 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein Der complement(2710306..2711805) Escherichia coli LY180 16980245 YP_008565656.1 CDS LY180_12880 NC_022364.1 2711896 2713074 R Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamB complement(2711896..2713074) Escherichia coli LY180 16980246 YP_008565657.1 CDS LY180_12885 NC_022364.1 2713085 2713705 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2713085..2713705) Escherichia coli LY180 16980247 YP_008565658.1 CDS hisS NC_022364.1 2713723 2714997 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidyl-tRNA synthetase complement(2713723..2714997) Escherichia coli LY180 16980248 YP_008565659.1 CDS LY180_12895 NC_022364.1 2715108 2716226 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2715108..2716226) Escherichia coli LY180 16980249 YP_008565660.1 CDS LY180_12900 NC_022364.1 2716253 2717266 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoskeletal protein RodZ complement(2716253..2717266) Escherichia coli LY180 16980250 YP_008565661.1 CDS LY180_12905 NC_022364.1 2717551 2718705 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S rRNA methyltransferase complement(2717551..2718705) Escherichia coli LY180 16980251 YP_008565662.1 CDS LY180_12910 NC_022364.1 2718855 2719286 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside diphosphate kinase complement(2718855..2719286) Escherichia coli LY180 16980252 YP_008565663.1 CDS LY180_12915 NC_022364.1 2719435 2721747 R penicillin-insensitive transglycosylase/transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1C complement(2719435..2721747) Escherichia coli LY180 16980253 YP_008565664.1 CDS LY180_12920 NC_022364.1 2721748 2726709 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2721748..2726709) Escherichia coli LY180 16980254 YP_008565665.1 CDS sseA NC_022364.1 2726916 2727761 D catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-mercaptopyruvate sulfurtransferase 2726916..2727761 Escherichia coli LY180 16980255 YP_008565666.1 CDS LY180_12930 NC_022364.1 2728254 2729030 R enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.; enhanced serine sensitivity protein SseB complement(2728254..2729030) Escherichia coli LY180 16980256 YP_008565667.1 CDS LY180_12935 NC_022364.1 2729172 2730455 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminopeptidase B complement(2729172..2730455) Escherichia coli LY180 16980257 YP_008565668.1 CDS LY180_12940 NC_022364.1 2730633 2730833 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2730633..2730833) Escherichia coli LY180 16980258 YP_008565669.1 CDS LY180_12945 NC_022364.1 2730845 2731180 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2Fe-2S ferredoxin complement(2730845..2731180) Escherichia coli LY180 16980259 YP_008565670.1 CDS hscA NC_022364.1 2731182 2733032 R involved in the maturation of iron-sulfur cluster-containing proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; chaperone protein HscA complement(2731182..2733032) Escherichia coli LY180 16980260 YP_008565671.1 CDS hscB NC_022364.1 2733049 2733564 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperone HscB complement(2733049..2733564) Escherichia coli LY180 16980261 YP_008565672.1 CDS iscA NC_022364.1 2733660 2733983 R forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster assembly protein complement(2733660..2733983) Escherichia coli LY180 16980262 YP_008565673.1 CDS LY180_12965 NC_022364.1 2734000 2734386 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FeS cluster assembly scaffold IscU complement(2734000..2734386) Escherichia coli LY180 16980263 YP_008565674.1 CDS LY180_12970 NC_022364.1 2734414 2735628 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine desulfurase complement(2734414..2735628) Escherichia coli LY180 16980264 YP_008565675.1 CDS LY180_12975 NC_022364.1 2735740 2736228 R regulates the expression of the iscRSUA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2735740..2736228) Escherichia coli LY180 16980265 YP_008565676.1 CDS LY180_12980 NC_022364.1 2736498 2737238 R catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase complement(2736498..2737238) Escherichia coli LY180 16980266 YP_008565677.1 CDS LY180_12985 NC_022364.1 2737357 2738160 D Derived by automated computational analysis using gene prediction method: Protein Homology.; inositol monophosphatase 2737357..2738160 Escherichia coli LY180 16980267 YP_008565678.1 CDS LY180_12990 NC_022364.1 2738305 2739159 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2738305..2739159 Escherichia coli LY180 16980268 YP_008565679.1 CDS LY180_12995 NC_022364.1 2739350 2740630 D Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase inducible protein CsiE 2739350..2740630 Escherichia coli LY180 16980269 YP_008565680.1 CDS LY180_13000 NC_022364.1 2740622 2741761 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionic acid MFS transporter complement(2740622..2741761) Escherichia coli LY180 16980270 YP_008565681.1 CDS LY180_13005 NC_022364.1 2741921 2742811 R activator of 3-phenylpropionic acid catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2741921..2742811) Escherichia coli LY180 16980271 YP_008565682.1 CDS LY180_13010 NC_022364.1 2742947 2743060 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2742947..2743060 Escherichia coli LY180 16980272 YP_008565683.1 CDS LY180_13015 NC_022364.1 2743070 2744278 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2743070..2744278) Escherichia coli LY180 16980273 YP_008565684.1 CDS LY180_13020 NC_022364.1 2744351 2745646 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionate dioxygenase 2744351..2745646 Escherichia coli LY180 16980274 YP_008565685.1 CDS LY180_13025 NC_022364.1 2745643 2746161 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionate dioxygenase 2745643..2746161 Escherichia coli LY180 16980275 YP_008565686.1 CDS LY180_13030 NC_022364.1 2746161 2746481 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phenylpropionate dioxygenase 2746161..2746481 Escherichia coli LY180 16980276 YP_008565687.1 CDS LY180_13035 NC_022364.1 2746478 2747290 D Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2746478..2747290 Escherichia coli LY180 16980277 YP_008565688.1 CDS LY180_13040 NC_022364.1 2747300 2748502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylpropionate dioxygenase ferredoxin reductase subunit 2747300..2748502 Escherichia coli LY180 16980278 YP_008565689.1 CDS LY180_13045 NC_022364.1 2748599 2749021 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2748599..2749021 Escherichia coli LY180 16980279 YP_008565690.1 CDS LY180_13050 NC_022364.1 2749069 2749941 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2749069..2749941) Escherichia coli LY180 16980280 YP_008565691.1 CDS LY180_13055 NC_022364.1 2749953 2751047 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(2749953..2751047) Escherichia coli LY180 16980281 YP_008565692.1 CDS LY180_13060 NC_022364.1 2751080 2752078 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease complement(2751080..2752078) Escherichia coli LY180 16980282 YP_008565693.1 CDS LY180_13065 NC_022364.1 2752103 2753614 R Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein complement(2752103..2753614) Escherichia coli LY180 16980283 YP_008565694.1 CDS LY180_13070 NC_022364.1 2753637 2754620 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein complement(2753637..2754620) Escherichia coli LY180 16980284 YP_008565695.1 CDS LY180_13075 NC_022364.1 2754717 2757998 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2754717..2757998) Escherichia coli LY180 16980285 YP_008565696.1 CDS LY180_13080 NC_022364.1 2758116 2759309 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2758116..2759309 Escherichia coli LY180 16980286 YP_008565697.1 CDS glyA NC_022364.1 2759373 2760626 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine hydroxymethyltransferase complement(2759373..2760626) Escherichia coli LY180 16980287 YP_008565698.1 CDS LY180_13090 NC_022364.1 2760954 2762144 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2 2760954..2762144 Escherichia coli LY180 16980288 YP_008565699.1 CDS LY180_13095 NC_022364.1 2762189 2762527 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulatory protein P-II complement(2762189..2762527) Escherichia coli LY180 16980289 YP_008565700.1 CDS LY180_13100 NC_022364.1 2762588 2763922 R with GlrK is part of a two-component signal transduction system regulating glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; response regulator complement(2762588..2763922) Escherichia coli LY180 16980290 YP_008565701.1 CDS LY180_13105 NC_022364.1 2763912 2764625 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2763912..2764625) Escherichia coli LY180 16980291 YP_008565702.1 CDS LY180_13110 NC_022364.1 2764790 2766217 R part of the GlrKR two-component signal transduction system involved in the regulation of glmY; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(2764790..2766217) Escherichia coli LY180 16980292 YP_008565703.1 CDS LY180_13115 NC_022364.1 2766793 2770680 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylformylglycinamidine synthase complement(2766793..2770680) Escherichia coli LY180 16980293 YP_008565704.1 CDS LY180_13120 NC_022364.1 2770938 2772494 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2770938..2772494 Escherichia coli LY180 16980294 YP_008565705.1 CDS LY180_13125 NC_022364.1 2772491 2773027 R Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine deaminase complement(2772491..2773027) Escherichia coli LY180 16980295 YP_008565706.1 CDS LY180_13130 NC_022364.1 2773052 2773687 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2773052..2773687) Escherichia coli LY180 16980296 YP_008565707.1 CDS LY180_13135 NC_022364.1 2773896 2774744 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2773896..2774744 Escherichia coli LY180 16980297 YP_008565708.1 CDS LY180_13140 NC_022364.1 2774800 2775060 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 2774800..2775060 Escherichia coli LY180 16980298 YP_008565709.1 CDS LY180_13145 NC_022364.1 2775254 2775334 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; small toxic protein shoB complement(2775254..2775334) Escherichia coli LY180 16980299 YP_008565710.1 CDS acpS NC_022364.1 2775755 2776135 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4'-phosphopantetheinyl transferase complement(2775755..2776135) Escherichia coli LY180 16980300 YP_008565711.1 CDS LY180_13155 NC_022364.1 2776135 2776866 R involved in the de novo synthesis of pyridoxine (Vitamin B6); Derived by automated computational analysis using gene prediction method: Protein Homology.; pyridoxine 5'-phosphate synthase complement(2776135..2776866) Escherichia coli LY180 16980301 YP_008565712.1 CDS recO NC_022364.1 2776878 2777606 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RecO complement(2776878..2777606) Escherichia coli LY180 16980302 YP_008565713.1 CDS LY180_13165 NC_022364.1 2777618 2778523 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase Era complement(2777618..2778523) Escherichia coli LY180 16980303 YP_008565714.1 CDS rnc NC_022364.1 2778520 2779200 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease III complement(2778520..2779200) Escherichia coli LY180 16980304 YP_008565715.1 CDS LY180_13175 NC_022364.1 2779472 2780446 R catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; signal peptidase complement(2779472..2780446) Escherichia coli LY180 16980305 YP_008565716.1 CDS LY180_13180 NC_022364.1 2780462 2782261 R Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor 4 complement(2780462..2782261) Escherichia coli LY180 16980306 YP_008565717.1 CDS LY180_13185 NC_022364.1 2782459 2782938 R involved in the reduction of the SoxR iron-sulfur cluster; Derived by automated computational analysis using gene prediction method: Protein Homology.; SoxR reducing system protein RseC complement(2782459..2782938) Escherichia coli LY180 16980307 YP_008565718.1 CDS rseB NC_022364.1 2782935 2783891 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-sigma E factor complement(2782935..2783891) Escherichia coli LY180 16980308 YP_008565719.1 CDS LY180_13195 NC_022364.1 2783891 2784541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma factor SigE complement(2783891..2784541) Escherichia coli LY180 16980309 YP_008565720.1 CDS LY180_13200 NC_022364.1 2784574 2785149 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor AlgU complement(2784574..2785149) Escherichia coli LY180 16980310 YP_008565721.1 CDS LY180_13205 NC_022364.1 2785557 2787179 D catalyzes the formation of oxaloacetate from L-aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-aspartate oxidase 2785557..2787179 Escherichia coli LY180 16980311 YP_008565722.1 CDS LY180_13210 NC_022364.1 2787164 2787901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (adenine-N6)-methyltransferase complement(2787164..2787901) Escherichia coli LY180 16980312 YP_008565723.1 CDS LY180_13215 NC_022364.1 2788033 2789367 D facilitates an early step in the assembly of the 50S subunit of the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase 2788033..2789367 Escherichia coli LY180 16980313 YP_008565724.1 CDS LY180_13220 NC_022364.1 2789400 2790326 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(2789400..2790326) Escherichia coli LY180 16980314 YP_008565725.1 CDS LY180_13225 NC_022364.1 2790384 2790971 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine/O-acetylserine exporter 2790384..2790971 Escherichia coli LY180 16980315 YP_008565726.1 CDS LY180_13230 NC_022364.1 2791026 2791409 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; autonomous glycyl radical cofactor GrcA complement(2791026..2791409) Escherichia coli LY180 16980316 YP_008565727.1 CDS LY180_13235 NC_022364.1 2791714 2792403 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; uracil-DNA glycosylase 2791714..2792403 Escherichia coli LY180 16980317 YP_008565728.1 CDS LY180_13240 NC_022364.1 2792451 2793488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(2792451..2793488) Escherichia coli LY180 16980318 YP_008565729.1 CDS LY180_13245 NC_022364.1 2793695 2794114 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 2793695..2794114 Escherichia coli LY180 16980319 YP_008565730.1 CDS LY180_13250 NC_022364.1 2794159 2794881 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2794159..2794881 Escherichia coli LY180 16980320 YP_008565731.1 CDS LY180_13255 NC_022364.1 2794913 2797573 D catalyzes the acetylation of lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysine acetyltransferase 2794913..2797573 Escherichia coli LY180 16980321 YP_008565732.1 CDS pssA NC_022364.1 2797687 2799042 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine synthase 2797687..2799042 Escherichia coli LY180 16980322 YP_008565733.1 CDS LY180_13265 NC_022364.1 2799088 2799411 D required for high salt suppression of motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2799088..2799411 Escherichia coli LY180 16980323 YP_008565734.1 CDS LY180_13270 NC_022364.1 2799408 2800706 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-ketoglutarate transporter complement(2799408..2800706) Escherichia coli LY180 16980324 YP_008565735.1 CDS LY180_13275 NC_022364.1 2800838 2800948 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2800838..2800948 Escherichia coli LY180 16980325 YP_008565736.1 CDS LY180_13300 NC_022364.1 2806571 2809144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone complement(2806571..2809144) Escherichia coli LY180 16980330 YP_008565737.1 CDS LY180_13305 NC_022364.1 2809274 2810005 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2809274..2810005) Escherichia coli LY180 16980331 YP_008565738.1 CDS rluD NC_022364.1 2810002 2810982 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase D complement(2810002..2810982) Escherichia coli LY180 16980332 YP_008565739.1 CDS LY180_13315 NC_022364.1 2811117 2811854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamD 2811117..2811854 Escherichia coli LY180 16980333 YP_008565740.1 CDS LY180_13320 NC_022364.1 2812125 2812466 D associated with 30S ribosomal subunit; interferes with translation elongation; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation inhibitor protein RaiA 2812125..2812466 Escherichia coli LY180 16980334 YP_008565741.1 CDS pheA NC_022364.1 2812716 2813876 D catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional chorismate mutase/prephenate dehydratase 2812716..2813876 Escherichia coli LY180 16980335 YP_008565742.1 CDS tyrA NC_022364.1 2813919 2815040 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate mutase complement(2813919..2815040) Escherichia coli LY180 16980336 YP_008565743.1 CDS LY180_13335 NC_022364.1 2815051 2816121 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2815051..2816121) Escherichia coli LY180 16980337 YP_008565744.1 CDS LY180_13340 NC_022364.1 2816331 2816696 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein 2816331..2816696 Escherichia coli LY180 16980338 YP_008565745.1 CDS LY180_13345 NC_022364.1 2816846 2817364 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2816846..2817364 Escherichia coli LY180 16980339 YP_008565746.1 CDS LY180_13350 NC_022364.1 2817354 2818580 D Derived by automated computational analysis using gene prediction method: Protein Homology.; diguanylate cyclase 2817354..2818580 Escherichia coli LY180 16980340 YP_008565747.1 CDS LY180_13355 NC_022364.1 2818596 2819078 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2818596..2819078 Escherichia coli LY180 16980341 YP_008565748.1 CDS LY180_13360 NC_022364.1 2819155 2819502 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L19 complement(2819155..2819502) Escherichia coli LY180 16980342 YP_008565749.1 CDS trmD NC_022364.1 2819544 2820311 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N1)-methyltransferase complement(2819544..2820311) Escherichia coli LY180 16980343 YP_008565750.1 CDS rimM NC_022364.1 2820342 2820890 R Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA-processing protein M complement(2820342..2820890) Escherichia coli LY180 16980344 YP_008565751.1 CDS LY180_13375 NC_022364.1 2820909 2821157 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S16 complement(2820909..2821157) Escherichia coli LY180 16980345 YP_008565752.1 CDS LY180_13380 NC_022364.1 2821406 2822767 R Derived by automated computational analysis using gene prediction method: Protein Homology.; signal recognition particle protein Srp54 complement(2821406..2822767) Escherichia coli LY180 16980346 YP_008565753.1 CDS LY180_13385 NC_022364.1 2822859 2823725 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2822859..2823725 Escherichia coli LY180 16980347 YP_008565754.1 CDS LY180_13390 NC_022364.1 2823770 2825032 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2823770..2825032 Escherichia coli LY180 16980348 YP_008565755.1 CDS LY180_13395 NC_022364.1 2825087 2825680 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein GrpE complement(2825087..2825680) Escherichia coli LY180 16980349 YP_008565756.1 CDS ppnK NC_022364.1 2825803 2826681 D catalyzes the phosphorylation of NAD to NADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic polyphosphate/ATP-NAD kinase 2825803..2826681 Escherichia coli LY180 16980350 YP_008565757.1 CDS LY180_13405 NC_022364.1 2826767 2828428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase 2826767..2828428 Escherichia coli LY180 16980351 YP_008565758.1 CDS LY180_13410 NC_022364.1 2828577 2828918 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane biogenesis protein BamE 2828577..2828918 Escherichia coli LY180 16980352 YP_008565759.1 CDS LY180_13415 NC_022364.1 2828980 2829270 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2828980..2829270) Escherichia coli LY180 16980353 YP_008565760.1 CDS LY180_13420 NC_022364.1 2829260 2829736 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2829260..2829736) Escherichia coli LY180 16980354 YP_008565761.1 CDS smpB NC_022364.1 2829868 2830350 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 2829868..2830350 Escherichia coli LY180 16980355 YP_008565762.1 CDS LY180_13430 NC_022364.1 2830347 2830451 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2830347..2830451) Escherichia coli LY180 16980356 YP_008565763.1 CDS LY180_13435 NC_022364.1 2831051 2832322 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; integrase 2831051..2832322 Escherichia coli LY180 16980357 YP_008565764.1 CDS LY180_13440 NC_022364.1 2832361 2832777 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2832361..2832777 Escherichia coli LY180 16980358 YP_008565765.1 CDS LY180_13445 NC_022364.1 2832849 2834597 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2832849..2834597) Escherichia coli LY180 16980359 YP_008565766.1 CDS LY180_13450 NC_022364.1 2834599 2836317 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2834599..2836317) Escherichia coli LY180 16980360 YP_008565767.1 CDS LY180_13455 NC_022364.1 2836469 2837335 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(2836469..2837335) Escherichia coli LY180 16980361 YP_008565768.1 CDS LY180_13460 NC_022364.1 2837332 2837631 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS3 complement(2837332..2837631) Escherichia coli LY180 16980362 YP_008565769.1 CDS LY180_13465 NC_022364.1 2837761 2838804 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2837761..2838804 Escherichia coli LY180 16980363 YP_008565770.1 CDS LY180_13470 NC_022364.1 2839140 2840117 D in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation induced protein 2839140..2840117 Escherichia coli LY180 16980364 YP_008565771.1 CDS LY180_13475 NC_022364.1 2840137 2841405 D catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxyglutarate oxidase 2840137..2841405 Escherichia coli LY180 16980365 YP_008565772.1 CDS gabD NC_022364.1 2841428 2842876 D catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinate-semialdehyde dehdyrogenase 2841428..2842876 Escherichia coli LY180 16980366 YP_008565773.1 CDS LY180_13485 NC_022364.1 2842890 2844170 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-aminobutyrate aminotransferase 2842890..2844170 Escherichia coli LY180 16980367 YP_008565774.1 CDS LY180_13490 NC_022364.1 2844407 2845807 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyrate transporter 2844407..2845807 Escherichia coli LY180 16980368 YP_008565775.1 CDS LY180_13495 NC_022364.1 2845828 2846490 D regulator of gab gene expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2845828..2846490 Escherichia coli LY180 16980369 YP_008565776.1 CDS LY180_13500 NC_022364.1 2846491 2846940 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidoglycan-binding protein LysM complement(2846491..2846940) Escherichia coli LY180 16980370 YP_008565777.1 CDS LY180_13505 NC_022364.1 2847024 2847182 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2847024..2847182) Escherichia coli LY180 16980371 YP_008565778.1 CDS LY180_13510 NC_022364.1 2847365 2847664 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2847365..2847664 Escherichia coli LY180 16980372 YP_008565779.1 CDS LY180_13515 NC_022364.1 2847674 2848198 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2847674..2848198 Escherichia coli LY180 16980373 YP_008565780.1 CDS LY180_13520 NC_022364.1 2848245 2848649 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(2848245..2848649) Escherichia coli LY180 16980374 YP_008565781.1 CDS LY180_13525 NC_022364.1 2849317 2849766 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2849317..2849766 Escherichia coli LY180 16980375 YP_008565782.1 CDS LY180_13530 NC_022364.1 2849803 2850147 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2849803..2850147) Escherichia coli LY180 16980376 YP_008565783.1 CDS LY180_13535 NC_022364.1 2850299 2850628 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2850299..2850628 Escherichia coli LY180 16980377 YP_008565784.1 CDS LY180_13540 NC_022364.1 2850876 2851121 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin 2850876..2851121 Escherichia coli LY180 16980378 YP_008565785.1 CDS nrdI NC_022364.1 2851118 2851528 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide reductase stimulatory protein 2851118..2851528 Escherichia coli LY180 16980379 YP_008565786.1 CDS LY180_13550 NC_022364.1 2851501 2853645 D Catalyzes the rate-limiting step in dNTP synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit alpha 2851501..2853645 Escherichia coli LY180 16980380 YP_008565787.1 CDS LY180_13555 NC_022364.1 2853655 2854614 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleotide-diphosphate reductase subunit beta 2853655..2854614 Escherichia coli LY180 16980381 YP_008565788.1 CDS LY180_13560 NC_022364.1 2854969 2856171 D with ProWX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter ATP-binding protein 2854969..2856171 Escherichia coli LY180 16980382 YP_008565789.1 CDS LY180_13565 NC_022364.1 2856164 2857228 D with ProVX is involved in the high-affinity uptake of glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine betaine transporter membrane protein 2856164..2857228 Escherichia coli LY180 16980383 YP_008565790.1 CDS proX NC_022364.1 2857286 2858278 D with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine/betaine ABC transporter substrate-binding protein 2857286..2858278 Escherichia coli LY180 16980384 YP_008565791.1 CDS LY180_13575 NC_022364.1 2858570 2859754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2858570..2859754 Escherichia coli LY180 16980385 YP_008565792.1 CDS LY180_13580 NC_022364.1 2859878 2860615 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2859878..2860615 Escherichia coli LY180 16980386 YP_008565793.1 CDS LY180_13585 NC_022364.1 2860605 2860940 D Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid ABC transporter permease 2860605..2860940 Escherichia coli LY180 16980387 YP_008565794.1 CDS LY180_13590 NC_022364.1 2861031 2861561 D DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2861031..2861561 Escherichia coli LY180 16980388 YP_008565795.1 CDS LY180_13595 NC_022364.1 2861688 2862860 D with ErmA and TolC forms a multidrug efflux system; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 2861688..2862860 Escherichia coli LY180 16980389 YP_008565796.1 CDS emrB NC_022364.1 2862877 2864415 D multidrug MFS transporte; with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein B 2862877..2864415 Escherichia coli LY180 16980390 YP_008565797.1 CDS LY180_13605 NC_022364.1 2864673 2865380 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2'-5' RNA ligase 2864673..2865380 Escherichia coli LY180 16980391 YP_008565798.1 CDS LY180_13610 NC_022364.1 2865377 2866489 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2865377..2866489 Escherichia coli LY180 16980392 YP_008565799.1 CDS LY180_13615 NC_022364.1 2866538 2867053 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; Derived by automated computational analysis using gene prediction method: Protein Homology.; S-ribosylhomocysteinase complement(2866538..2867053) Escherichia coli LY180 16980393 YP_008565800.1 CDS LY180_13620 NC_022364.1 2867203 2868759 R involved in the first step of glutathione biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate--cysteine ligase complement(2867203..2868759) Escherichia coli LY180 16980394 YP_008565801.1 CDS LY180_13625 NC_022364.1 2868832 2869260 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2868832..2869260) Escherichia coli LY180 16980395 YP_008565802.1 CDS LY180_13630 NC_022364.1 2869257 2869823 R YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1-P/6-phosphogluconate phosphatase complement(2869257..2869823) Escherichia coli LY180 16980396 YP_008565803.1 CDS LY180_13660 NC_022364.1 2871281 2871466 R affects carbohydrate metabolism; has regulatory role in many processes; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon storage regulator complement(2871281..2871466) Escherichia coli LY180 16980402 YP_008565804.1 CDS LY180_13665 NC_022364.1 2871701 2874331 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alanyl-tRNA synthetase complement(2871701..2874331) Escherichia coli LY180 16980403 YP_008565805.1 CDS recX NC_022364.1 2874459 2874959 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombination protein RecX complement(2874459..2874959) Escherichia coli LY180 16980404 YP_008565806.1 CDS recA NC_022364.1 2875202 2876263 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase RecA complement(2875202..2876263) Escherichia coli LY180 16980405 YP_008565807.1 CDS LY180_13680 NC_022364.1 2876343 2876840 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2876343..2876840) Escherichia coli LY180 16980406 YP_008565808.1 CDS LY180_13685 NC_022364.1 2876985 2878070 R membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein hydrolase B complement(2876985..2878070) Escherichia coli LY180 16980407 YP_008565809.1 CDS srlA NC_022364.1 2878326 2878889 D catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane; the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIC 2878326..2878889 Escherichia coli LY180 16980408 YP_008565810.1 CDS srlE NC_022364.1 2878886 2879845 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIB 2878886..2879845 Escherichia coli LY180 16980409 YP_008565811.1 CDS LY180_13700 NC_022364.1 2879856 2880227 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sorbitol transporter subunit IIA 2879856..2880227 Escherichia coli LY180 16980410 YP_008565812.1 CDS LY180_13705 NC_022364.1 2880231 2881010 D catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sorbitol-6-phosphate dehydrogenase 2880231..2881010 Escherichia coli LY180 16980411 YP_008565813.1 CDS LY180_13710 NC_022364.1 2881115 2881474 D regulator for glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2881115..2881474 Escherichia coli LY180 16980412 YP_008565814.1 CDS srlR NC_022364.1 2881541 2882314 D regulates genes involved in glucitol utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2881541..2882314 Escherichia coli LY180 16980413 YP_008565815.1 CDS LY180_13720 NC_022364.1 2882307 2883272 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arabinose 5-phosphate isomerase 2882307..2883272 Escherichia coli LY180 16980414 YP_008565816.1 CDS LY180_13725 NC_022364.1 2883269 2884783 R Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2883269..2884783) Escherichia coli LY180 16980415 YP_008565817.1 CDS LY180_13730 NC_022364.1 2884970 2886409 D detoxifies nitric oxide using NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitric oxide reductase 2884970..2886409 Escherichia coli LY180 16980416 YP_008565818.1 CDS LY180_13735 NC_022364.1 2886406 2887539 D Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH:flavorubredoxin oxidoreductase 2886406..2887539 Escherichia coli LY180 16980417 YP_008565819.1 CDS LY180_13740 NC_022364.1 2887765 2890017 R carbamoyltransferase; involved in the formation of the cyanate group of hydrogenase; catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl phosphate phosphatase complement(2887765..2890017) Escherichia coli LY180 16980418 YP_008565820.1 CDS LY180_13745 NC_022364.1 2890170 2890550 R involved in electron transport from formate to hydrogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-H ferredoxin subunit complement(2890170..2890550) Escherichia coli LY180 16980419 YP_008565821.1 CDS LY180_13750 NC_022364.1 2890715 2891923 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2890715..2891923 Escherichia coli LY180 16980420 YP_008565822.1 CDS LY180_13755 NC_022364.1 2892184 2893197 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(2892184..2893197) Escherichia coli LY180 16980421 YP_008565823.1 CDS LY180_13760 NC_022364.1 2893454 2894911 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS cellobiose transporter subunit IIBC 2893454..2894911 Escherichia coli LY180 16980422 YP_008565824.1 CDS LY180_13765 NC_022364.1 2894920 2896344 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 2894920..2896344 Escherichia coli LY180 16980423 YP_008565825.1 CDS LY180_13770 NC_022364.1 2896512 2897063 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase complement(2896512..2897063) Escherichia coli LY180 16980424 YP_008565826.1 CDS hycI NC_022364.1 2897783 2898253 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 maturation protease complement(2897783..2898253) Escherichia coli LY180 16980425 YP_008565827.1 CDS LY180_13780 NC_022364.1 2898246 2898656 R required for the maturation of the formate hydrogenlyase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase maturation protein HycH complement(2898246..2898656) Escherichia coli LY180 16980426 YP_008565828.1 CDS LY180_13785 NC_022364.1 2898653 2899420 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 7 complement(2898653..2899420) Escherichia coli LY180 16980427 YP_008565829.1 CDS LY180_13790 NC_022364.1 2899420 2899962 R electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase complex iron-sulfur subunit complement(2899420..2899962) Escherichia coli LY180 16980428 YP_008565830.1 CDS hycE NC_022364.1 2899972 2901681 R formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 large subunit complement(2899972..2901681) Escherichia coli LY180 16980429 YP_008565831.1 CDS hycD NC_022364.1 2901699 2902622 R formate hydrogenlyase subunit 4; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 3 membrane subunit complement(2901699..2902622) Escherichia coli LY180 16980430 YP_008565832.1 CDS LY180_13805 NC_022364.1 2902625 2904451 R catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 3 complement(2902625..2904451) Escherichia coli LY180 16980431 YP_008565833.1 CDS LY180_13810 NC_022364.1 2904448 2905059 R Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase subunit 2 complement(2904448..2905059) Escherichia coli LY180 16980432 YP_008565834.1 CDS LY180_13815 NC_022364.1 2905184 2905645 R regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate hydrogenlyase regulatory protein HycA complement(2905184..2905645) Escherichia coli LY180 16980433 YP_008565835.1 CDS LY180_13820 NC_022364.1 2905679 2905816 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2905679..2905816) Escherichia coli LY180 16980434 YP_008565836.1 CDS hypA NC_022364.1 2905845 2906207 D plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein 2905845..2906207 Escherichia coli LY180 16980435 YP_008565837.1 CDS LY180_13830 NC_022364.1 2906211 2907083 D GTP hydrolase involved in nickel liganding into hydrogenases; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein HypB 2906211..2907083 Escherichia coli LY180 16980436 YP_008565838.1 CDS LY180_13835 NC_022364.1 2907074 2907346 D HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase assembly chaperone 2907074..2907346 Escherichia coli LY180 16980437 YP_008565839.1 CDS LY180_13840 NC_022364.1 2907346 2908467 D necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase formation protein HypD 2907346..2908467 Escherichia coli LY180 16980438 YP_008565840.1 CDS LY180_13845 NC_022364.1 2908464 2909474 D hydrogenase isoenzymes formation protein; involved in the formation of the cyanate group of the large subunit of the hydrogenase; catalyzes the formation of thiocyanate from thiocarbamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamoyl dehydratase 2908464..2909474 Escherichia coli LY180 16980439 YP_008565841.1 CDS LY180_13850 NC_022364.1 2909548 2911626 D regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2909548..2911626 Escherichia coli LY180 16980440 YP_008565842.1 CDS LY180_13855 NC_022364.1 2911663 2912016 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2911663..2912016) Escherichia coli LY180 16980441 YP_008565843.1 CDS LY180_13860 NC_022364.1 2912048 2912227 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2912048..2912227) Escherichia coli LY180 16980442 YP_008565844.1 CDS LY180_13865 NC_022364.1 2912303 2914864 D This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein MutS 2912303..2914864 Escherichia coli LY180 16980443 YP_008565845.1 CDS LY180_13870 NC_022364.1 2914970 2915626 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein phosphatase 2914970..2915626 Escherichia coli LY180 16980444 YP_008565846.1 CDS LY180_13875 NC_022364.1 2915677 2916444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(2915677..2916444) Escherichia coli LY180 16980445 YP_008565847.1 CDS LY180_13880 NC_022364.1 2916640 2917548 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 2916640..2917548 Escherichia coli LY180 16980446 YP_008565848.1 CDS LY180_13885 NC_022364.1 2917545 2918807 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2917545..2918807 Escherichia coli LY180 16980447 YP_008565849.1 CDS LY180_13890 NC_022364.1 2918804 2919442 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; aldolase 2918804..2919442 Escherichia coli LY180 16980448 YP_008565850.1 CDS LY180_13895 NC_022364.1 2919447 2920223 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxypyruvate isomerase 2919447..2920223 Escherichia coli LY180 16980449 YP_008565851.1 CDS LY180_13900 NC_022364.1 2920312 2921676 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 2920312..2921676 Escherichia coli LY180 16980450 YP_008565852.1 CDS LY180_13905 NC_022364.1 2921715 2921951 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate decarboxylase complement(2921715..2921951) Escherichia coli LY180 16980451 YP_008565853.1 CDS LY180_13910 NC_022364.1 2921962 2923389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phenolic acid decarboxylase subunit C complement(2921962..2923389) Escherichia coli LY180 16980452 YP_008565854.1 CDS LY180_13915 NC_022364.1 2923389 2923982 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2923389..2923982) Escherichia coli LY180 16980453 YP_008565855.1 CDS LY180_13920 NC_022364.1 2924129 2924536 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2924129..2924536 Escherichia coli LY180 16980454 YP_008565856.1 CDS LY180_13925 NC_022364.1 2924657 2925649 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA polymerase sigma factor RpoS complement(2924657..2925649) Escherichia coli LY180 16980455 YP_008565857.1 CDS nlpD NC_022364.1 2925712 2926851 R outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpD complement(2925712..2926851) Escherichia coli LY180 16980456 YP_008565858.1 CDS pcm NC_022364.1 2926991 2927617 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-L-isoaspartate O-methyltransferase complement(2926991..2927617) Escherichia coli LY180 16980457 YP_008565859.1 CDS surE NC_022364.1 2927611 2928372 R broad specificity 5'(3')-nucleotidase and polyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.; stationary phase survival protein SurE complement(2927611..2928372) Escherichia coli LY180 16980458 YP_008565860.1 CDS truD NC_022364.1 2928353 2929402 R catalyzes the modification of U13 in tRNA(Glu); Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase D complement(2928353..2929402) Escherichia coli LY180 16980459 YP_008565861.1 CDS ispF NC_022364.1 2929399 2929878 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2929399..2929878) Escherichia coli LY180 16980460 YP_008565862.1 CDS LY180_13955 NC_022364.1 2929878 2930588 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2929878..2930588) Escherichia coli LY180 16980461 YP_008565863.1 CDS ftsB NC_022364.1 2930607 2930918 R forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsB complement(2930607..2930918) Escherichia coli LY180 16980462 YP_008565864.1 CDS LY180_13965 NC_022364.1 2931112 2931435 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2931112..2931435) Escherichia coli LY180 16980463 YP_008565865.1 CDS LY180_13970 NC_022364.1 2931485 2932090 R converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylylsulfate kinase complement(2931485..2932090) Escherichia coli LY180 16980464 YP_008565866.1 CDS cysN NC_022364.1 2932090 2933517 R may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 1 complement(2932090..2933517) Escherichia coli LY180 16980465 YP_008565867.1 CDS LY180_13980 NC_022364.1 2933519 2934427 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate adenylyltransferase subunit 2 complement(2933519..2934427) Escherichia coli LY180 16980466 YP_008565868.1 CDS LY180_13985 NC_022364.1 2934679 2935716 D catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; Derived by automated computational analysis using gene prediction method: Protein Homology.; alkaline phosphatase isozyme conversion aminopeptidase 2934679..2935716 Escherichia coli LY180 16980467 YP_008565869.1 CDS LY180_13990 NC_022364.1 2936777 2937070 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ssRNA endonuclease complement(2936777..2937070) Escherichia coli LY180 16980468 YP_008565870.1 CDS LY180_13995 NC_022364.1 2937070 2937990 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cas1 complement(2937070..2937990) Escherichia coli LY180 16980469 YP_008565871.1 CDS LY180_14000 NC_022364.1 2937987 2938637 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cas6 complement(2937987..2938637) Escherichia coli LY180 16980470 YP_008565872.1 CDS LY180_14005 NC_022364.1 2938619 2939365 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic protein complement(2938619..2939365) Escherichia coli LY180 16980471 YP_008565873.1 CDS LY180_14010 NC_022364.1 2939376 2940431 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein Cse4 complement(2939376..2940431) Escherichia coli LY180 16980472 YP_008565874.1 CDS LY180_14015 NC_022364.1 2940443 2940982 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(2940443..2940982) Escherichia coli LY180 16980473 YP_008565875.1 CDS LY180_14020 NC_022364.1 2940979 2942541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; CRISPR-associated protein CasA complement(2940979..2942541) Escherichia coli LY180 16980474 YP_008565876.1 CDS LY180_14025 NC_022364.1 2942639 2945338 R Derived by automated computational analysis using gene prediction method: Protein Homology.; helicase complement(2942639..2945338) Escherichia coli LY180 16980475 YP_008565877.1 CDS LY180_14030 NC_022364.1 2945533 2945685 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2945533..2945685) Escherichia coli LY180 16980476 YP_008565878.1 CDS LY180_14035 NC_022364.1 2945950 2946684 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoadenosine phosphosulfate reductase complement(2945950..2946684) Escherichia coli LY180 16980477 YP_008565879.1 CDS LY180_14040 NC_022364.1 2946758 2948470 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit beta complement(2946758..2948470) Escherichia coli LY180 16980478 YP_008565880.1 CDS cysJ NC_022364.1 2948470 2950269 R catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfite reductase subunit alpha complement(2948470..2950269) Escherichia coli LY180 16980479 YP_008565881.1 CDS LY180_14050 NC_022364.1 2950585 2950950 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-carboxy-5,6,7,8-tetrahydropterin synthase 2950585..2950950 Escherichia coli LY180 16980480 YP_008565882.1 CDS LY180_14055 NC_022364.1 2951028 2952299 D Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-dependent oxidoreductase 2951028..2952299 Escherichia coli LY180 16980481 YP_008565883.1 CDS LY180_14060 NC_022364.1 2952290 2952550 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin 2952290..2952550 Escherichia coli LY180 16980482 YP_008565884.1 CDS LY180_14065 NC_022364.1 2952567 2953142 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 2952567..2953142 Escherichia coli LY180 16980483 YP_008565885.1 CDS LY180_14070 NC_022364.1 2953290 2954150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein complement(2953290..2954150) Escherichia coli LY180 16980484 YP_008565886.1 CDS LY180_14075 NC_022364.1 2954147 2954926 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein subunit YgcR complement(2954147..2954926) Escherichia coli LY180 16980485 YP_008565887.1 CDS LY180_14080 NC_022364.1 2954904 2956241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; major facilitator transporter complement(2954904..2956241) Escherichia coli LY180 16980486 YP_008565888.1 CDS LY180_14085 NC_022364.1 2956335 2957789 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-linked oxidoreductase complement(2956335..2957789) Escherichia coli LY180 16980487 YP_008565889.1 CDS LY180_14090 NC_022364.1 2957859 2958644 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(2957859..2958644) Escherichia coli LY180 16980488 YP_008565890.1 CDS LY180_14095 NC_022364.1 2958963 2960240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 2958963..2960240 Escherichia coli LY180 16980489 YP_008565891.1 CDS LY180_14100 NC_022364.1 2960267 2961745 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 2960267..2961745 Escherichia coli LY180 16980490 YP_008565892.1 CDS LY180_14105 NC_022364.1 2963363 2964034 R Derived by automated computational analysis using gene prediction method: Protein Homology.; coenzyme PQQ biosynthesis protein complement(2963363..2964034) Escherichia coli LY180 16980491 YP_008565893.1 CDS LY180_14110 NC_022364.1 2964173 2964313 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2964173..2964313 Escherichia coli LY180 16980492 YP_008565894.1 CDS LY180_14115 NC_022364.1 2964327 2965199 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 2964327..2965199 Escherichia coli LY180 16980493 YP_008565895.1 CDS eno NC_022364.1 2965259 2966557 R catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; enolase complement(2965259..2966557) Escherichia coli LY180 16980494 YP_008565896.1 CDS pyrG NC_022364.1 2966645 2968282 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; Derived by automated computational analysis using gene prediction method: Protein Homology.; CTP synthetase complement(2966645..2968282) Escherichia coli LY180 16980495 YP_008565897.1 CDS mazG NC_022364.1 2968510 2969301 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate pyrophosphohydrolase complement(2968510..2969301) Escherichia coli LY180 16980496 YP_008565898.1 CDS LY180_14135 NC_022364.1 2969372 2969707 R ChpA; endoribonuclease; toxin of the MazF-MazE (ChpA-ChpR) toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin complement(2969372..2969707) Escherichia coli LY180 16980497 YP_008565899.1 CDS LY180_14140 NC_022364.1 2969707 2969955 R part of the MazF-MazE toxin-antitoxin system; conteracts MazF; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin MazE complement(2969707..2969955) Escherichia coli LY180 16980498 YP_008565900.1 CDS relA NC_022364.1 2970033 2972267 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP pyrophosphokinase complement(2970033..2972267) Escherichia coli LY180 16980499 YP_008565901.1 CDS rumA NC_022364.1 2972315 2973616 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(2972315..2973616) Escherichia coli LY180 16980500 YP_008565902.1 CDS gudD NC_022364.1 2976661 2978001 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(2976661..2978001) Escherichia coli LY180 16980502 YP_008565903.1 CDS gudD NC_022364.1 2978022 2979362 R catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate dehydratase complement(2978022..2979362) Escherichia coli LY180 16980503 YP_008565904.1 CDS LY180_14170 NC_022364.1 2979364 2980716 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(2979364..2980716) Escherichia coli LY180 16980504 YP_008565905.1 CDS LY180_14175 NC_022364.1 2981151 2981600 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin complement(2981151..2981600) Escherichia coli LY180 16980505 YP_008565906.1 CDS LY180_14180 NC_022364.1 2981618 2982400 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase C complement(2981618..2982400) Escherichia coli LY180 16980506 YP_008565907.1 CDS LY180_14185 NC_022364.1 2982400 2982729 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(2982400..2982729) Escherichia coli LY180 16980507 YP_008565908.1 CDS LY180_14190 NC_022364.1 2982976 2983104 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(2982976..2983104) Escherichia coli LY180 16980508 YP_008565909.1 CDS LY180_14195 NC_022364.1 2983351 2983896 R SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; Derived by automated computational analysis using gene prediction method: Protein Homology.; SecY interacting protein Syd complement(2983351..2983896) Escherichia coli LY180 16980509 YP_008565910.1 CDS queF NC_022364.1 2983964 2984812 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 7-cyano-7-deazaguanine reductase 2983964..2984812 Escherichia coli LY180 16980510 YP_008565911.1 CDS LY180_14205 NC_022364.1 2984924 2986288 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LOG family protein ygdH 2984924..2986288 Escherichia coli LY180 16980511 YP_008565912.1 CDS LY180_14210 NC_022364.1 2986845 2988134 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 2986845..2988134 Escherichia coli LY180 16980512 YP_008565913.1 CDS LY180_14215 NC_022364.1 2988192 2989559 D catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase 2988192..2989559 Escherichia coli LY180 16980513 YP_008565914.1 CDS LY180_14220 NC_022364.1 2989581 2990426 D similar to flap endonuclease; FEN family; protein from E. coli does not have exonuclease activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 2989581..2990426 Escherichia coli LY180 16980514 YP_008565915.1 CDS LY180_14225 NC_022364.1 2990481 2991629 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-1,2-propanediol oxidoreductase complement(2990481..2991629) Escherichia coli LY180 16980515 YP_008565916.1 CDS LY180_14230 NC_022364.1 2991657 2992304 R catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fuculose phosphate aldolase complement(2991657..2992304) Escherichia coli LY180 16980516 YP_008565917.1 CDS LY180_14235 NC_022364.1 2992851 2994167 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose transporter 2992851..2994167 Escherichia coli LY180 16980517 YP_008565918.1 CDS fucI NC_022364.1 2994200 2995975 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; Derived by automated computational analysis using gene prediction method: Protein Homology.; fucose isomerase 2994200..2995975 Escherichia coli LY180 16980518 YP_008565919.1 CDS LY180_14245 NC_022364.1 2996054 2997502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fuculokinase 2996054..2997502 Escherichia coli LY180 16980519 YP_008565920.1 CDS fucU NC_022364.1 2997504 2997926 D catalyzes the interconversion of alpha-L-fucose to beta-L-fucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-fucose mutarotase 2997504..2997926 Escherichia coli LY180 16980520 YP_008565921.1 CDS LY180_14255 NC_022364.1 2997984 2998715 D regulates expression of genes involved in L-fucose utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 2997984..2998715 Escherichia coli LY180 16980521 YP_008565922.1 CDS LY180_14260 NC_022364.1 2998759 2999859 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(2998759..2999859) Escherichia coli LY180 16980522 YP_008565923.1 CDS LY180_14265 NC_022364.1 2999852 3000247 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(2999852..3000247) Escherichia coli LY180 16980523 YP_008565924.1 CDS LY180_14270 NC_022364.1 3000266 3001183 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3000266..3001183) Escherichia coli LY180 16980524 YP_008565925.1 CDS LY180_14275 NC_022364.1 3001534 3001761 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3001534..3001761) Escherichia coli LY180 16980525 YP_008565926.1 CDS LY180_14280 NC_022364.1 3001953 3003158 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cysteine sulfinate desulfinase 3001953..3003158 Escherichia coli LY180 16980526 YP_008565927.1 CDS LY180_14285 NC_022364.1 3003158 3003601 D binds and activates CsdA; Fe-S protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; CsdA-binding activator 3003158..3003601 Escherichia coli LY180 16980527 YP_008565928.1 CDS LY180_14290 NC_022364.1 3003652 3004458 R accepts sulfur from CsdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur acceptor protein CsdL complement(3003652..3004458) Escherichia coli LY180 16980528 YP_008565929.1 CDS mltA NC_022364.1 3004535 3005632 R membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase A complement(3004535..3005632) Escherichia coli LY180 16980529 YP_008565930.1 CDS LY180_14315 NC_022364.1 3006772 3007272 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3006772..3007272 Escherichia coli LY180 16980533 YP_008565931.1 CDS LY180_14320 NC_022364.1 3007331 3008869 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; EvpB/family type VI secretion protein 3007331..3008869 Escherichia coli LY180 16980534 YP_008565932.1 CDS LY180_14325 NC_022364.1 3008887 3010224 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3008887..3010224 Escherichia coli LY180 16980535 YP_008565933.1 CDS LY180_14330 NC_022364.1 3010221 3010886 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein ImpK 3010221..3010886 Escherichia coli LY180 16980536 YP_008565934.1 CDS LY180_14335 NC_022364.1 3010899 3012551 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; OmpA family protein 3010899..3012551 Escherichia coli LY180 16980537 YP_008565935.1 CDS LY180_14340 NC_022364.1 3012609 3013100 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Hcp family type VI secretion system effector 3012609..3013100 Escherichia coli LY180 16980538 YP_008565936.1 CDS LY180_14345 NC_022364.1 3013291 3015936 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein disaggregation chaperone 3013291..3015936 Escherichia coli LY180 16980539 YP_008565937.1 CDS LY180_14350 NC_022364.1 3015948 3018434 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3015948..3018434 Escherichia coli LY180 16980540 YP_008565938.1 CDS LY180_14355 NC_022364.1 3018436 3019287 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3018436..3019287 Escherichia coli LY180 16980541 YP_008565939.1 CDS LY180_14360 NC_022364.1 3019277 3019813 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3019277..3019813 Escherichia coli LY180 16980542 YP_008565940.1 CDS LY180_14365 NC_022364.1 3020138 3022645 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3020138..3022645 Escherichia coli LY180 16980543 YP_008565941.1 CDS LY180_14370 NC_022364.1 3022846 3023268 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3022846..3023268 Escherichia coli LY180 16980544 YP_008565942.1 CDS LY180_14375 NC_022364.1 3023270 3023821 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3023270..3023821 Escherichia coli LY180 16980545 YP_008565943.1 CDS LY180_14380 NC_022364.1 3023899 3025113 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3023899..3025113 Escherichia coli LY180 16980546 YP_008565944.1 CDS LY180_14385 NC_022364.1 3025113 3028502 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein VasK 3025113..3028502 Escherichia coli LY180 16980547 YP_008565945.1 CDS LY180_14390 NC_022364.1 3028495 3030105 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3028495..3030105 Escherichia coli LY180 16980548 YP_008565946.1 CDS LY180_14395 NC_022364.1 3030105 3031028 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Paar 3030105..3031028 Escherichia coli LY180 16980549 YP_008565947.1 CDS LY180_14400 NC_022364.1 3031025 3031423 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3031025..3031423 Escherichia coli LY180 16980550 YP_008565948.1 CDS LY180_14405 NC_022364.1 3031478 3031585 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3031478..3031585 Escherichia coli LY180 16980551 YP_008565949.1 CDS LY180_14410 NC_022364.1 3031736 3032029 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3031736..3032029 Escherichia coli LY180 16980552 YP_008565950.1 CDS LY180_14415 NC_022364.1 3032130 3033488 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3032130..3033488 Escherichia coli LY180 16980553 YP_008565951.1 CDS LY180_14420 NC_022364.1 3033963 3034640 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(3033963..3034640) Escherichia coli LY180 16982292 YP_008565952.1 CDS LY180_14425 NC_022364.1 3034829 3035140 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS3 complement(3034829..3035140) Escherichia coli LY180 16980555 YP_008565953.1 CDS LY180_14430 NC_022364.1 3036166 3036588 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3036166..3036588 Escherichia coli LY180 16980556 YP_008565954.1 CDS LY180_14435 NC_022364.1 3037148 3038908 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein ImpG 3037148..3038908 Escherichia coli LY180 16980557 YP_008565955.1 CDS LY180_14440 NC_022364.1 3038872 3039951 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3038872..3039951 Escherichia coli LY180 16980558 YP_008565956.1 CDS LY180_14445 NC_022364.1 3039932 3040468 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type VI secretion protein 3039932..3040468 Escherichia coli LY180 16980559 YP_008565957.1 CDS LY180_14450 NC_022364.1 3040496 3040900 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3040496..3040900 Escherichia coli LY180 16980560 YP_008565958.1 CDS LY180_14455 NC_022364.1 3040900 3042276 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; impA family protein 3040900..3042276 Escherichia coli LY180 16980561 YP_008565959.1 CDS LY180_14460 NC_022364.1 3042341 3042889 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator 3042341..3042889 Escherichia coli LY180 16980562 YP_008565960.1 CDS amiC NC_022364.1 3043235 3044488 R hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase complement(3043235..3044488) Escherichia coli LY180 16980563 YP_008565961.1 CDS LY180_14470 NC_022364.1 3044720 3046051 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylglutamate synthase 3044720..3046051 Escherichia coli LY180 16980564 YP_008565962.1 CDS recD NC_022364.1 3046113 3047939 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit alpha complement(3046113..3047939) Escherichia coli LY180 16980565 YP_008565963.1 CDS recB NC_022364.1 3047939 3051481 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit beta complement(3047939..3051481) Escherichia coli LY180 16980566 YP_008565964.1 CDS LY180_14485 NC_022364.1 3051474 3054362 R degrades small peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease complement(3051474..3054362) Escherichia coli LY180 16980567 YP_008565965.1 CDS recC NC_022364.1 3054538 3057906 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; Derived by automated computational analysis using gene prediction method: Protein Homology.; exonuclease V subunit gamma complement(3054538..3057906) Escherichia coli LY180 16980568 YP_008565966.1 CDS LY180_14495 NC_022364.1 3057919 3058242 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3057919..3058242) Escherichia coli LY180 16980569 YP_008565967.1 CDS LY180_14500 NC_022364.1 3058227 3058634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3058227..3058634) Escherichia coli LY180 16980570 YP_008565968.1 CDS LY180_14505 NC_022364.1 3058631 3059194 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3058631..3059194) Escherichia coli LY180 16980571 YP_008565969.1 CDS LY180_14510 NC_022364.1 3059185 3059655 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3059185..3059655) Escherichia coli LY180 16980572 YP_008565970.1 CDS LY180_14515 NC_022364.1 3059840 3060634 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidylate synthase complement(3059840..3060634) Escherichia coli LY180 16980573 YP_008565971.1 CDS LY180_14520 NC_022364.1 3060641 3061516 R Derived by automated computational analysis using gene prediction method: Protein Homology.; prolipoprotein diacylglyceryl transferase complement(3060641..3061516) Escherichia coli LY180 16980574 YP_008565972.1 CDS LY180_14525 NC_022364.1 3061667 3063913 R member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate-protein phosphotransferase complement(3061667..3063913) Escherichia coli LY180 16980575 YP_008565973.1 CDS LY180_14530 NC_022364.1 3063926 3064456 R hydrolyzes diadenosine polyphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA pyrophosphohydrolase complement(3063926..3064456) Escherichia coli LY180 16980576 YP_008565974.1 CDS LY180_14535 NC_022364.1 3065141 3065830 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 3065141..3065830 Escherichia coli LY180 16980577 YP_008565975.1 CDS LY180_14540 NC_022364.1 3065899 3066612 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3065899..3066612 Escherichia coli LY180 16980578 YP_008565976.1 CDS LY180_14545 NC_022364.1 3066750 3066968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3066750..3066968 Escherichia coli LY180 16980579 YP_008565977.1 CDS tas NC_022364.1 3067076 3068116 D complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldo-keto reductase 3067076..3068116 Escherichia coli LY180 16980580 YP_008565978.1 CDS LY180_14555 NC_022364.1 3068148 3069341 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipid transporter LplT complement(3068148..3069341) Escherichia coli LY180 16980581 YP_008565979.1 CDS LY180_14560 NC_022364.1 3069334 3071493 R Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-acyl-glycerophospho-ethanolamine acyltransferase complement(3069334..3071493) Escherichia coli LY180 16980582 YP_008565980.1 CDS LY180_14565 NC_022364.1 3072079 3073110 D controls transcription of galETKM; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3072079..3073110 Escherichia coli LY180 16980583 YP_008565981.1 CDS LY180_14570 NC_022364.1 3073117 3074379 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate decarboxylase complement(3073117..3074379) Escherichia coli LY180 16980584 YP_008565982.1 CDS LY180_14575 NC_022364.1 3074501 3075436 D activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3074501..3075436 Escherichia coli LY180 16980585 YP_008565983.1 CDS LY180_14580 NC_022364.1 3075423 3076115 R Derived by automated computational analysis using gene prediction method: Protein Homology.; racemase complement(3075423..3076115) Escherichia coli LY180 16980586 YP_008565984.1 CDS LY180_14585 NC_022364.1 3076244 3077662 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter complement(3076244..3077662) Escherichia coli LY180 16980587 YP_008565985.1 CDS LY180_14590 NC_022364.1 3077977 3078738 R catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-deoxy-D-gluconate 3-dehydrogenase complement(3077977..3078738) Escherichia coli LY180 16980588 YP_008565986.1 CDS LY180_14595 NC_022364.1 3078768 3079604 R 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-keto-4-deoxyuronate isomerase complement(3078768..3079604) Escherichia coli LY180 16980589 YP_008565987.1 CDS LY180_14600 NC_022364.1 3079891 3081072 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA acetyltransferase complement(3079891..3081072) Escherichia coli LY180 16980590 YP_008565988.1 CDS LY180_14605 NC_022364.1 3081327 3082556 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3081327..3082556 Escherichia coli LY180 16980591 YP_008565989.1 CDS LY180_14610 NC_022364.1 3082983 3083648 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3082983..3083648 Escherichia coli LY180 16980592 YP_008565990.1 CDS LY180_14615 NC_022364.1 3083982 3084791 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3083982..3084791 Escherichia coli LY180 16980593 YP_008565991.1 CDS LY180_14620 NC_022364.1 3084784 3085266 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3084784..3085266 Escherichia coli LY180 16980594 YP_008565992.1 CDS LY180_14625 NC_022364.1 3085299 3085379 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3085299..3085379) Escherichia coli LY180 16980595 YP_008565993.1 CDS LY180_14630 NC_022364.1 3085415 3085840 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3085415..3085840) Escherichia coli LY180 16980596 YP_008565994.1 CDS LY180_14640 NC_022364.1 3086749 3087240 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3086749..3087240 Escherichia coli LY180 16980598 YP_008565995.1 CDS LY180_14645 NC_022364.1 3087575 3088951 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3087575..3088951 Escherichia coli LY180 16980599 YP_008565996.1 CDS LY180_14650 NC_022364.1 3089118 3089336 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3089118..3089336 Escherichia coli LY180 16980600 YP_008565997.1 CDS LY180_14655 NC_022364.1 3089940 3090383 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LuxR family transcriptional regulator complement(3089940..3090383) Escherichia coli LY180 16982299 YP_008565998.1 CDS LY180_14660 NC_022364.1 3090417 3090572 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcriptional regulator complement(3090417..3090572) Escherichia coli LY180 16980602 YP_008565999.1 CDS LY180_14665 NC_022364.1 3090793 3091224 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3090793..3091224) Escherichia coli LY180 16980603 YP_008566000.1 CDS LY180_14670 NC_022364.1 3092037 3092573 R required for invasion of epithelial cells; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system lipoprotein PrgK complement(3092037..3092573) Escherichia coli LY180 16980604 YP_008566001.1 CDS LY180_14675 NC_022364.1 3092561 3092680 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3092561..3092680) Escherichia coli LY180 16980605 YP_008566002.1 CDS LY180_14680 NC_022364.1 3092812 3093099 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; EprJ complement(3092812..3093099) Escherichia coli LY180 16980606 YP_008566003.1 CDS LY180_14685 NC_022364.1 3093373 3094563 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion protein complement(3093373..3094563) Escherichia coli LY180 16980607 YP_008566004.1 CDS LY180_14690 NC_022364.1 3094812 3095243 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; LuxR family transcriptional regulator 3094812..3095243 Escherichia coli LY180 16980608 YP_008566005.1 CDS LY180_14695 NC_022364.1 3095314 3095607 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; invasion protein 3095314..3095607 Escherichia coli LY180 16980609 YP_008566006.1 CDS LY180_14700 NC_022364.1 3095668 3096060 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3095668..3096060) Escherichia coli LY180 16980610 YP_008566007.1 CDS LY180_14705 NC_022364.1 3096057 3096788 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3096057..3096788) Escherichia coli LY180 16980611 YP_008566008.1 CDS LY180_14710 NC_022364.1 3096797 3097564 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion protein complement(3096797..3097564) Escherichia coli LY180 16980612 YP_008566009.1 CDS LY180_14715 NC_022364.1 3097640 3097825 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion protein complement(3097640..3097825) Escherichia coli LY180 16980613 YP_008566010.1 CDS LY180_14720 NC_022364.1 3097835 3098500 R Derived by automated computational analysis using gene prediction method: Protein Homology.; type III secretion system protein complement(3097835..3098500) Escherichia coli LY180 16980614 YP_008566011.1 CDS LY180_14725 NC_022364.1 3098490 3098831 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; YscQ/HrcQ family type III secretion apparatus protein complement(3098490..3098831) Escherichia coli LY180 16980615 YP_008566012.1 CDS LY180_14730 NC_022364.1 3099072 3099437 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type III secretion system protein SpaO complement(3099072..3099437) Escherichia coli LY180 16980616 YP_008566013.1 CDS LY180_14735 NC_022364.1 3099569 3101179 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3099569..3101179) Escherichia coli LY180 16980617 YP_008566014.1 CDS LY180_14745 NC_022364.1 3101565 3102320 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3101565..3102320) Escherichia coli LY180 16980619 YP_008566015.1 CDS LY180_14750 NC_022364.1 3102735 3105032 D molybdenum cofactor-binding protein; participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit A 3102735..3105032 Escherichia coli LY180 16980620 YP_008566016.1 CDS LY180_14755 NC_022364.1 3105043 3105921 D FAD-binding subunit; with XdhA and XdhC participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit B 3105043..3105921 Escherichia coli LY180 16980621 YP_008566017.1 CDS LY180_14760 NC_022364.1 3105918 3106397 D iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine dehydrogenase subunit C 3105918..3106397 Escherichia coli LY180 16980622 YP_008566018.1 CDS LY180_14765 NC_022364.1 3106437 3108215 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator complement(3106437..3108215) Escherichia coli LY180 16980623 YP_008566019.1 CDS LY180_14770 NC_022364.1 3108691 3109881 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase 3108691..3109881 Escherichia coli LY180 16980624 YP_008566020.1 CDS LY180_14775 NC_022364.1 3109939 3111135 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopropionate ammonia-lyase 3109939..3111135 Escherichia coli LY180 16980625 YP_008566021.1 CDS LY180_14780 NC_022364.1 3111193 3112404 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase 3111193..3112404 Escherichia coli LY180 16980626 YP_008566022.1 CDS LY180_14785 NC_022364.1 3112457 3113842 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; Derived by automated computational analysis using gene prediction method: Protein Homology.; phenylhydantoinase 3112457..3113842 Escherichia coli LY180 16980627 YP_008566023.1 CDS LY180_14790 NC_022364.1 3113890 3114822 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbamate kinase 3113890..3114822 Escherichia coli LY180 16980628 YP_008566024.1 CDS LY180_14795 NC_022364.1 3114863 3116488 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3114863..3116488) Escherichia coli LY180 16980629 YP_008566025.1 CDS LY180_14800 NC_022364.1 3116536 3117306 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3116536..3117306) Escherichia coli LY180 16980630 YP_008566026.1 CDS LY180_14805 NC_022364.1 3117409 3117987 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Molybdenum cofactor cytidylyltransferase 3117409..3117987 Escherichia coli LY180 16980631 YP_008566027.1 CDS LY180_14810 NC_022364.1 3118309 3121407 D with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenate reductase 3118309..3121407 Escherichia coli LY180 16980632 YP_008566028.1 CDS LY180_14815 NC_022364.1 3121410 3122738 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; chlorohydrolase/aminohydrolase 3121410..3122738 Escherichia coli LY180 16980633 YP_008566029.1 CDS LY180_14820 NC_022364.1 3122789 3123568 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3122789..3123568 Escherichia coli LY180 16980634 YP_008566030.1 CDS LY180_14825 NC_022364.1 3123565 3126435 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypoxanthine oxidase 3123565..3126435 Escherichia coli LY180 16980635 YP_008566031.1 CDS LY180_14830 NC_022364.1 3126600 3128000 D Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 3126600..3128000 Escherichia coli LY180 16980636 YP_008566032.1 CDS LY180_14835 NC_022364.1 3128018 3129334 D Catalyzes the deamination of guanine; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanine deaminase 3128018..3129334 Escherichia coli LY180 16980637 YP_008566033.1 CDS LY180_14840 NC_022364.1 3129370 3130737 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 3129370..3130737 Escherichia coli LY180 16980638 YP_008566034.1 CDS LY180_14845 NC_022364.1 3130773 3131261 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter complement(3130773..3131261) Escherichia coli LY180 16980639 YP_008566035.1 CDS LY180_14850 NC_022364.1 3131261 3133180 R unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase Fe-S binding subunit complement(3131261..3133180) Escherichia coli LY180 16980640 YP_008566036.1 CDS LY180_14855 NC_022364.1 3133616 3135064 D Derived by automated computational analysis using gene prediction method: Protein Homology.; purine permease 3133616..3135064 Escherichia coli LY180 16980641 YP_008566037.1 CDS LY180_14860 NC_022364.1 3135054 3135191 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3135054..3135191 Escherichia coli LY180 16980642 YP_008566038.1 CDS LY180_14865 NC_022364.1 3135314 3135862 D catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; isopentenyl-diphosphate delta-isomerase 3135314..3135862 Escherichia coli LY180 16980643 YP_008566039.1 CDS lysS NC_022364.1 3135905 3137422 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase complement(3135905..3137422) Escherichia coli LY180 16980644 YP_008566040.1 CDS prfA NC_022364.1 3137432 3138313 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide chain release factor 1 complement(3137432..3138313) Escherichia coli LY180 16980645 YP_008566041.1 CDS LY180_14880 NC_022364.1 3138314 3138469 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3138314..3138469 Escherichia coli LY180 16980646 YP_008566042.1 CDS LY180_14885 NC_022364.1 3138621 3140354 R 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.; ssDNA exonuclease RecJ complement(3138621..3140354) Escherichia coli LY180 16980647 YP_008566043.1 CDS LY180_14890 NC_022364.1 3140360 3141070 R DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; protein-disulfide isomerase complement(3140360..3141070) Escherichia coli LY180 16980648 YP_008566044.1 CDS xerD NC_022364.1 3141095 3141991 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerD complement(3141095..3141991) Escherichia coli LY180 16980649 YP_008566045.1 CDS LY180_14900 NC_022364.1 3142103 3142624 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavodoxin 3142103..3142624 Escherichia coli LY180 16980650 YP_008566046.1 CDS LY180_14905 NC_022364.1 3142664 3143071 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3142664..3143071) Escherichia coli LY180 16980651 YP_008566047.1 CDS LY180_14910 NC_022364.1 3143052 3143318 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3143052..3143318) Escherichia coli LY180 16980652 YP_008566048.1 CDS LY180_14915 NC_022364.1 3143311 3143484 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3143311..3143484 Escherichia coli LY180 16980653 YP_008566049.1 CDS ygfZ NC_022364.1 3143561 3144541 D physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulato; Hda supressor; Derived by automated computational analysis using gene prediction method: Protein Homology.; global regulator 3143561..3144541 Escherichia coli LY180 16980654 YP_008566050.1 CDS LY180_14925 NC_022364.1 3144618 3145277 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hemolysin complement(3144618..3145277) Escherichia coli LY180 16980655 YP_008566051.1 CDS LY180_14930 NC_022364.1 3145441 3145752 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3145441..3145752) Escherichia coli LY180 16980656 YP_008566052.1 CDS LY180_14935 NC_022364.1 3145791 3147230 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase 3145791..3147230 Escherichia coli LY180 16980657 YP_008566053.1 CDS LY180_14940 NC_022364.1 3147287 3148030 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)-binding oxidoreductase complement(3147287..3148030) Escherichia coli LY180 16980658 YP_008566054.1 CDS LY180_14945 NC_022364.1 3148296 3151169 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine dehydrogenase complement(3148296..3151169) Escherichia coli LY180 16980659 YP_008566055.1 CDS LY180_14950 NC_022364.1 3151288 3151677 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system protein H complement(3151288..3151677) Escherichia coli LY180 16980660 YP_008566056.1 CDS gcvT NC_022364.1 3151701 3152795 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycine cleavage system aminomethyltransferase T complement(3151701..3152795) Escherichia coli LY180 16980661 YP_008566057.1 CDS LY180_14960 NC_022364.1 3153242 3154444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3153242..3154444) Escherichia coli LY180 16980662 YP_008566058.1 CDS LY180_14965 NC_022364.1 3154467 3155645 R Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-octaprenyl-6-methoxyphenyl hydroxylase complement(3154467..3155645) Escherichia coli LY180 16980663 YP_008566059.1 CDS LY180_14970 NC_022364.1 3155642 3156967 R exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline aminopeptidase P II complement(3155642..3156967) Escherichia coli LY180 16980664 YP_008566060.1 CDS LY180_14975 NC_022364.1 3156993 3157571 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3156993..3157571) Escherichia coli LY180 16980665 YP_008566061.1 CDS LY180_14980 NC_022364.1 3157739 3158068 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Z-ring-associated protein 3157739..3158068 Escherichia coli LY180 16980666 YP_008566062.1 CDS LY180_14985 NC_022364.1 3158368 3158916 D ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-formyltetrahydrofolate cyclo-ligase 3158368..3158916 Escherichia coli LY180 16980667 YP_008566063.1 CDS LY180_14990 NC_022364.1 3159697 3160929 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-phosphoglycerate dehydrogenase complement(3159697..3160929) Escherichia coli LY180 16980668 YP_008566064.1 CDS LY180_14995 NC_022364.1 3161184 3161879 R catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase complement(3161184..3161879) Escherichia coli LY180 16980669 YP_008566065.1 CDS LY180_15000 NC_022364.1 3161899 3162129 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3161899..3162129) Escherichia coli LY180 16980670 YP_008566066.1 CDS LY180_15005 NC_022364.1 3162271 3163164 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosome replication initiation inhibitor protein 3162271..3163164 Escherichia coli LY180 16980671 YP_008566067.1 CDS LY180_15010 NC_022364.1 3163368 3165512 D MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonyl-CoA mutase 3163368..3165512 Escherichia coli LY180 16980672 YP_008566068.1 CDS LY180_15015 NC_022364.1 3165505 3166500 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein kinase 3165505..3166500 Escherichia coli LY180 16980673 YP_008566069.1 CDS LY180_15020 NC_022364.1 3166511 3167296 D catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; methylmalonyl-CoA decarboxylase 3166511..3167296 Escherichia coli LY180 16980674 YP_008566070.1 CDS LY180_15025 NC_022364.1 3167320 3168798 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA hydrolase 3167320..3168798 Escherichia coli LY180 16980675 YP_008566071.1 CDS LY180_15030 NC_022364.1 3168795 3169691 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(3168795..3169691) Escherichia coli LY180 16980676 YP_008566072.1 CDS LY180_15035 NC_022364.1 3169858 3170598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative stress defense protein complement(3169858..3170598) Escherichia coli LY180 16980677 YP_008566073.1 CDS LY180_15040 NC_022364.1 3170691 3171326 R Involved in the export of arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine exporter protein complement(3170691..3171326) Escherichia coli LY180 16980678 YP_008566074.1 CDS LY180_15045 NC_022364.1 3171465 3172325 R participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel MscS complement(3171465..3172325) Escherichia coli LY180 16980679 YP_008566075.1 CDS LY180_15050 NC_022364.1 3172348 3172620 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3172348..3172620) Escherichia coli LY180 16980680 YP_008566076.1 CDS LY180_15055 NC_022364.1 3172683 3173762 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(3172683..3173762) Escherichia coli LY180 16980681 YP_008566077.1 CDS LY180_15060 NC_022364.1 3173977 3175140 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate kinase complement(3173977..3175140) Escherichia coli LY180 16980682 YP_008566078.1 CDS gapA NC_022364.1 3175190 3176209 R required for glycolysis; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glyceraldehyde-3-phosphate dehydrogenase complement(3175190..3176209) Escherichia coli LY180 16980683 YP_008566079.1 CDS LY180_15070 NC_022364.1 3176581 3177012 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein 3176581..3177012 Escherichia coli LY180 16980684 YP_008566080.1 CDS LY180_15075 NC_022364.1 3177035 3177613 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3177035..3177613 Escherichia coli LY180 16980685 YP_008566081.1 CDS LY180_15080 NC_022364.1 3177614 3178321 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter permease 3177614..3178321 Escherichia coli LY180 16980686 YP_008566082.1 CDS LY180_15085 NC_022364.1 3178303 3178986 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cobalt ABC transporter ATP-binding protein 3178303..3178986 Escherichia coli LY180 16980687 YP_008566083.1 CDS LY180_15090 NC_022364.1 3178980 3179657 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein 3178980..3179657 Escherichia coli LY180 16980688 YP_008566084.1 CDS LY180_15095 NC_022364.1 3179629 3180342 R Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside triphosphate hydrolase complement(3179629..3180342) Escherichia coli LY180 16980689 YP_008566085.1 CDS LY180_15100 NC_022364.1 3180339 3180848 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor complement(3180339..3180848) Escherichia coli LY180 16980690 YP_008566086.1 CDS LY180_15105 NC_022364.1 3180870 3181835 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase complement(3180870..3181835) Escherichia coli LY180 16980691 YP_008566087.1 CDS LY180_15110 NC_022364.1 3181832 3183109 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-sorbose 1-phosphate reductase complement(3181832..3183109) Escherichia coli LY180 16980692 YP_008566088.1 CDS LY180_15115 NC_022364.1 3183124 3184512 R CmtA with CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIBC complement(3183124..3184512) Escherichia coli LY180 16980693 YP_008566089.1 CDS cmtB NC_022364.1 3184540 3184983 R TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIA complement(3184540..3184983) Escherichia coli LY180 16980694 YP_008566090.1 CDS LY180_15125 NC_022364.1 3185297 3187288 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transketolase complement(3185297..3187288) Escherichia coli LY180 16980695 YP_008566091.1 CDS LY180_15130 NC_022364.1 3187566 3188324 D Derived by automated computational analysis using gene prediction method: Protein Homology.; metalloprotease 3187566..3188324 Escherichia coli LY180 16980696 YP_008566092.1 CDS LY180_15135 NC_022364.1 3188530 3189450 R catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method: Protein Homology.; agmatinase complement(3188530..3189450) Escherichia coli LY180 16980697 YP_008566093.1 CDS LY180_15140 NC_022364.1 3189586 3189960 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3189586..3189960) Escherichia coli LY180 16980698 YP_008566094.1 CDS LY180_15145 NC_022364.1 3190084 3190587 R Derived by automated computational analysis using gene prediction method: Protein Homology.; insB complement(3190084..3190587) Escherichia coli LY180 16980699 YP_008566095.1 CDS LY180_15150 NC_022364.1 3190810 3191094 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3190810..3191094) Escherichia coli LY180 16980700 YP_008566096.1 CDS LY180_15155 NC_022364.1 3191240 3193216 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine decarboxylase complement(3191240..3193216) Escherichia coli LY180 16980701 YP_008566097.1 CDS LY180_15160 NC_022364.1 3193225 3193371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3193225..3193371) Escherichia coli LY180 16980702 YP_008566098.1 CDS LY180_15165 NC_022364.1 3194011 3195165 D Derived by automated computational analysis using gene prediction method: Protein Homology.; S-adenosylmethionine synthetase 3194011..3195165 Escherichia coli LY180 16980703 YP_008566099.1 CDS LY180_15170 NC_022364.1 3195601 3196995 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-galactose transporter 3195601..3196995 Escherichia coli LY180 16980704 YP_008566100.1 CDS LY180_15175 NC_022364.1 3197072 3197569 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3197072..3197569 Escherichia coli LY180 16980705 YP_008566101.1 CDS LY180_15180 NC_022364.1 3197664 3198371 D Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease 3197664..3198371 Escherichia coli LY180 16980706 YP_008566102.1 CDS LY180_15185 NC_022364.1 3198451 3199182 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3198451..3199182 Escherichia coli LY180 16980707 YP_008566103.1 CDS LY180_15190 NC_022364.1 3199195 3200145 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione synthetase 3199195..3200145 Escherichia coli LY180 16980708 YP_008566104.1 CDS LY180_15195 NC_022364.1 3200254 3200817 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3200254..3200817 Escherichia coli LY180 16980709 YP_008566105.1 CDS LY180_15200 NC_022364.1 3200817 3201233 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Derived by automated computational analysis using gene prediction method: Protein Homology.; Holliday junction resolvase 3200817..3201233 Escherichia coli LY180 16980710 YP_008566106.1 CDS LY180_15205 NC_022364.1 3201409 3202389 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3201409..3202389) Escherichia coli LY180 16980711 YP_008566107.1 CDS LY180_15210 NC_022364.1 3202407 3203111 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3202407..3203111 Escherichia coli LY180 16980712 YP_008566108.1 CDS LY180_15215 NC_022364.1 3203129 3203695 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3203129..3203695 Escherichia coli LY180 16980713 YP_008566109.1 CDS LY180_15220 NC_022364.1 3203692 3203982 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3203692..3203982 Escherichia coli LY180 16980714 YP_008566110.1 CDS LY180_15225 NC_022364.1 3203990 3204583 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside-triphosphate diphosphatase 3203990..3204583 Escherichia coli LY180 16980715 YP_008566111.1 CDS LY180_15230 NC_022364.1 3204576 3205712 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HemN family oxidoreductase 3204576..3205712 Escherichia coli LY180 16980716 YP_008566112.1 CDS LY180_15235 NC_022364.1 3205867 3206874 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3205867..3206874) Escherichia coli LY180 16980717 YP_008566113.1 CDS ansB NC_022364.1 3206991 3208037 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-asparaginase complement(3206991..3208037) Escherichia coli LY180 16980718 YP_008566114.1 CDS LY180_15245 NC_022364.1 3208213 3208932 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3208213..3208932) Escherichia coli LY180 16980719 YP_008566115.1 CDS LY180_15250 NC_022364.1 3208953 3209093 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3208953..3209093) Escherichia coli LY180 16980720 YP_008566116.1 CDS LY180_15255 NC_022364.1 3209116 3209442 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3209116..3209442) Escherichia coli LY180 16980721 YP_008566117.1 CDS trmB NC_022364.1 3209442 3210161 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (guanine-N(7)-)-methyltransferase complement(3209442..3210161) Escherichia coli LY180 16980722 YP_008566118.1 CDS LY180_15265 NC_022364.1 3210322 3211374 D Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine DNA glycosylase 3210322..3211374 Escherichia coli LY180 16980723 YP_008566119.1 CDS LY180_15270 NC_022364.1 3211402 3211677 D protects iron-sulfur proteins against oxidative damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidative damage protection protein 3211402..3211677 Escherichia coli LY180 16980724 YP_008566120.1 CDS mltC NC_022364.1 3211742 3212821 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; Derived by automated computational analysis using gene prediction method: Protein Homology.; murein transglycosylase C 3211742..3212821 Escherichia coli LY180 16980725 YP_008566121.1 CDS LY180_15280 NC_022364.1 3213023 3214279 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleoside permease 3213023..3214279 Escherichia coli LY180 16980726 YP_008566122.1 CDS LY180_15285 NC_022364.1 3214329 3216464 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine decarboxylase complement(3214329..3216464) Escherichia coli LY180 16980727 YP_008566123.1 CDS LY180_15290 NC_022364.1 3216862 3217569 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3216862..3217569 Escherichia coli LY180 16980728 YP_008566124.1 CDS LY180_15300 NC_022364.1 3217899 3218435 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein complement(3217899..3218435) Escherichia coli LY180 16980730 YP_008566125.1 CDS LY180_15305 NC_022364.1 3218437 3219615 R similar to general secretory pathway protein L; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GspL complement(3218437..3219615) Escherichia coli LY180 16980731 YP_008566126.1 CDS LY180_15310 NC_022364.1 3219612 3220589 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein complement(3219612..3220589) Escherichia coli LY180 16980732 YP_008566127.1 CDS LY180_15315 NC_022364.1 3220586 3221155 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; general secretion pathway protein J complement(3220586..3221155) Escherichia coli LY180 16980733 YP_008566128.1 CDS LY180_15320 NC_022364.1 3221188 3221559 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein complement(3221188..3221559) Escherichia coli LY180 16980734 YP_008566129.1 CDS LY180_15325 NC_022364.1 3221556 3222119 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; general secretion pathway protein H complement(3221556..3222119) Escherichia coli LY180 16980735 YP_008566130.1 CDS LY180_15330 NC_022364.1 3222123 3222578 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein G complement(3222123..3222578) Escherichia coli LY180 16980736 YP_008566131.1 CDS LY180_15335 NC_022364.1 3222595 3223818 R Derived by automated computational analysis using gene prediction method: Protein Homology.; general secretion pathway protein F complement(3222595..3223818) Escherichia coli LY180 16980737 YP_008566132.1 CDS LY180_15340 NC_022364.1 3223818 3225311 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3223818..3225311) Escherichia coli LY180 16980738 YP_008566133.1 CDS LY180_15345 NC_022364.1 3225311 3227371 R Derived by automated computational analysis using gene prediction method: Protein Homology.; secretion system protein D complement(3225311..3227371) Escherichia coli LY180 16980739 YP_008566134.1 CDS LY180_15350 NC_022364.1 3227401 3228231 R part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type II secretion system protein C complement(3227401..3228231) Escherichia coli LY180 16980740 YP_008566135.1 CDS LY180_15355 NC_022364.1 3228378 3228788 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3228378..3228788) Escherichia coli LY180 16980741 YP_008566136.1 CDS LY180_15360 NC_022364.1 3228854 3229663 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase A24 complement(3228854..3229663) Escherichia coli LY180 16980742 YP_008566137.1 CDS LY180_15365 NC_022364.1 3229811 3234241 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Accessory colonization factor AcfD complement(3229811..3234241) Escherichia coli LY180 16980743 YP_008566138.1 CDS LY180_15370 NC_022364.1 3234859 3236541 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease complement(3234859..3236541) Escherichia coli LY180 16980744 YP_008566139.1 CDS LY180_15375 NC_022364.1 3236897 3239068 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase complement(3236897..3239068) Escherichia coli LY180 16980745 YP_008566140.1 CDS LY180_15380 NC_022364.1 3239090 3239494 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3239090..3239494) Escherichia coli LY180 16980746 YP_008566141.1 CDS glcF NC_022364.1 3239499 3240722 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycolate oxidase complement(3239499..3240722) Escherichia coli LY180 16980747 YP_008566142.1 CDS glcE NC_022364.1 3240733 3241785 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein complement(3240733..3241785) Escherichia coli LY180 16980748 YP_008566143.1 CDS LY180_15395 NC_022364.1 3241785 3243284 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FAD-binding protein complement(3241785..3243284) Escherichia coli LY180 16980749 YP_008566144.1 CDS LY180_15400 NC_022364.1 3244306 3245448 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein complement(3244306..3245448) Escherichia coli LY180 16980750 YP_008566145.1 CDS LY180_15405 NC_022364.1 3245852 3247540 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3245852..3247540 Escherichia coli LY180 16980751 YP_008566146.1 CDS LY180_15410 NC_022364.1 3247537 3248451 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3247537..3248451 Escherichia coli LY180 16980752 YP_008566147.1 CDS LY180_15415 NC_022364.1 3248504 3248731 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3248504..3248731 Escherichia coli LY180 16980753 YP_008566148.1 CDS LY180_15420 NC_022364.1 3248731 3249903 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 8-amino-7-oxononanoate synthase 3248731..3249903 Escherichia coli LY180 16980754 YP_008566149.1 CDS LY180_15425 NC_022364.1 3249938 3251017 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(3249938..3251017) Escherichia coli LY180 16980755 YP_008566150.1 CDS LY180_15430 NC_022364.1 3251014 3252084 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; permease complement(3251014..3252084) Escherichia coli LY180 16980756 YP_008566151.1 CDS LY180_15435 NC_022364.1 3252115 3252675 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3252115..3252675) Escherichia coli LY180 16980757 YP_008566152.1 CDS LY180_15440 NC_022364.1 3252687 3253511 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3252687..3253511) Escherichia coli LY180 16980758 YP_008566153.1 CDS LY180_15445 NC_022364.1 3253511 3254860 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3253511..3254860) Escherichia coli LY180 16980759 YP_008566154.1 CDS LY180_15450 NC_022364.1 3254906 3255664 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3254906..3255664) Escherichia coli LY180 16980760 YP_008566155.1 CDS LY180_15455 NC_022364.1 3255696 3256409 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3255696..3256409) Escherichia coli LY180 16980761 YP_008566156.1 CDS LY180_15460 NC_022364.1 3256583 3257275 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-binding protein 3256583..3257275 Escherichia coli LY180 16980762 YP_008566157.1 CDS LY180_15465 NC_022364.1 3257329 3258828 R involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA complement(3257329..3258828) Escherichia coli LY180 16980763 YP_008566158.1 CDS LY180_15470 NC_022364.1 3259120 3260979 R catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3259120..3260979) Escherichia coli LY180 16980764 YP_008566159.1 CDS LY180_15475 NC_022364.1 3261184 3262050 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GSH-dependent disulfide bond oxidoreductase 3261184..3262050 Escherichia coli LY180 16980765 YP_008566160.1 CDS LY180_15480 NC_022364.1 3262173 3262421 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 accessory protein HypG complement(3262173..3262421) Escherichia coli LY180 16980766 YP_008566161.1 CDS hypA NC_022364.1 3262434 3262775 R plays a role in hydrogenase nickel cofactor insertion; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase nickel incorporation protein complement(3262434..3262775) Escherichia coli LY180 16980767 YP_008566162.1 CDS LY180_15490 NC_022364.1 3262768 3263256 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3262768..3263256) Escherichia coli LY180 16980768 YP_008566163.1 CDS hybD NC_022364.1 3263249 3263743 R protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 maturation endopeptidase complement(3263249..3263743) Escherichia coli LY180 16980769 YP_008566164.1 CDS LY180_15500 NC_022364.1 3263743 3265446 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 large subunit complement(3263743..3265446) Escherichia coli LY180 16980770 YP_008566165.1 CDS LY180_15505 NC_022364.1 3265443 3266621 R HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 b cytochrome subunit complement(3265443..3266621) Escherichia coli LY180 16980771 YP_008566166.1 CDS LY180_15510 NC_022364.1 3266611 3267597 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase complement(3266611..3267597) Escherichia coli LY180 16980772 YP_008566167.1 CDS LY180_15515 NC_022364.1 3267600 3268718 R involved in hydrogen uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrogenase 2 small subunit complement(3267600..3268718) Escherichia coli LY180 16980773 YP_008566168.1 CDS LY180_15520 NC_022364.1 3268907 3269194 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3268907..3269194) Escherichia coli LY180 16980774 YP_008566169.1 CDS LY180_15525 NC_022364.1 3269313 3270200 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dienelactone hydrolase complement(3269313..3270200) Escherichia coli LY180 16980775 YP_008566170.1 CDS LY180_15530 NC_022364.1 3270357 3271397 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-glyceraldehyde 3-phosphate reductase 3270357..3271397 Escherichia coli LY180 16980776 YP_008566171.1 CDS LY180_15535 NC_022364.1 3271437 3271931 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3271437..3271931) Escherichia coli LY180 16980777 YP_008566172.1 CDS LY180_15540 NC_022364.1 3272122 3273006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3272122..3273006 Escherichia coli LY180 16980778 YP_008566173.1 CDS LY180_15545 NC_022364.1 3273278 3273703 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbD complement(3273278..3273703) Escherichia coli LY180 16980779 YP_008566174.1 CDS LY180_15550 NC_022364.1 3273710 3274444 R membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; biopolymer transporter ExbB complement(3273710..3274444) Escherichia coli LY180 16980780 YP_008566175.1 CDS LY180_15555 NC_022364.1 3274437 3274652 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3274437..3274652) Escherichia coli LY180 16980781 YP_008566176.1 CDS LY180_15560 NC_022364.1 3274695 3275882 D catalyzes the formation of L-homocysteine from cystathionine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine beta-lyase 3274695..3275882 Escherichia coli LY180 16980782 YP_008566177.1 CDS LY180_15565 NC_022364.1 3276022 3276681 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3276022..3276681 Escherichia coli LY180 16980783 YP_008566178.1 CDS LY180_15570 NC_022364.1 3276721 3277677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3276721..3277677) Escherichia coli LY180 16980784 YP_008566179.1 CDS LY180_15575 NC_022364.1 3277814 3278977 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde oxidoreductase 3277814..3278977 Escherichia coli LY180 16980785 YP_008566180.1 CDS dkgA NC_022364.1 3279082 3279909 D methylglyoxal reductase/beta-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,5-diketo-D-gluconic acid reductase 3279082..3279909 Escherichia coli LY180 16980786 YP_008566181.1 CDS LY180_15585 NC_022364.1 3280109 3281035 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3280109..3281035 Escherichia coli LY180 16980787 YP_008566182.1 CDS LY180_15590 NC_022364.1 3281086 3281343 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3281086..3281343 Escherichia coli LY180 16980788 YP_008566183.1 CDS LY180_15595 NC_022364.1 3281386 3283605 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3281386..3283605) Escherichia coli LY180 16980789 YP_008566184.1 CDS LY180_15600 NC_022364.1 3283716 3285128 R septal ring component that protects the divisome from stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsI complement(3283716..3285128) Escherichia coli LY180 16980790 YP_008566185.1 CDS LY180_15605 NC_022364.1 3285203 3285940 R catalyzes the formation of 1,2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3285203..3285940) Escherichia coli LY180 16980791 YP_008566186.1 CDS LY180_15610 NC_022364.1 3286173 3288431 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit A complement(3286173..3288431) Escherichia coli LY180 16980792 YP_008566187.1 CDS LY180_15615 NC_022364.1 3288759 3288977 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA-directed DNA polymerase complement(3288759..3288977) Escherichia coli LY180 16980793 YP_008566188.1 CDS LY180_15620 NC_022364.1 3288977 3289459 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3288977..3289459) Escherichia coli LY180 16980794 YP_008566189.1 CDS LY180_15625 NC_022364.1 3289512 3289904 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3289512..3289904) Escherichia coli LY180 16980795 YP_008566190.1 CDS LY180_15630 NC_022364.1 3290056 3290715 D response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3290056..3290715 Escherichia coli LY180 16980796 YP_008566191.1 CDS LY180_15635 NC_022364.1 3290712 3292061 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein QseC 3290712..3292061 Escherichia coli LY180 16980797 YP_008566192.1 CDS LY180_15640 NC_022364.1 3292107 3292439 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3292107..3292439) Escherichia coli LY180 16980798 YP_008566193.1 CDS LY180_15645 NC_022364.1 3292758 3293339 D involved in drug resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADPH quinone reductase MdaB 3292758..3293339 Escherichia coli LY180 16980799 YP_008566194.1 CDS LY180_15650 NC_022364.1 3293370 3293684 D catalyzes the oxidation of menadiol to menadione; Derived by automated computational analysis using gene prediction method: Protein Homology.; quinol monooxygenase 3293370..3293684 Escherichia coli LY180 16980800 YP_008566195.1 CDS LY180_15655 NC_022364.1 3293732 3295624 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA topoisomerase IV subunit B complement(3293732..3295624) Escherichia coli LY180 16980801 YP_008566196.1 CDS LY180_15660 NC_022364.1 3295653 3296234 R Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase complement(3295653..3296234) Escherichia coli LY180 16980802 YP_008566197.1 CDS LY180_15665 NC_022364.1 3296234 3297061 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 3',5'-cyclic-nucleotide phosphodiesterase complement(3296234..3297061) Escherichia coli LY180 16980803 YP_008566198.1 CDS LY180_15670 NC_022364.1 3297086 3297508 R Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydrogenase complement(3297086..3297508) Escherichia coli LY180 16980804 YP_008566199.1 CDS nudF NC_022364.1 3297509 3298138 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-ribose pyrophosphatase complement(3297509..3298138) Escherichia coli LY180 16980805 YP_008566200.1 CDS tolC NC_022364.1 3298343 3299824 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane channel protein 3298343..3299824 Escherichia coli LY180 16980806 YP_008566201.1 CDS LY180_15685 NC_022364.1 3299972 3300643 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3299972..3300643 Escherichia coli LY180 16980807 YP_008566202.1 CDS LY180_15690 NC_022364.1 3300649 3301809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3300649..3301809 Escherichia coli LY180 16980808 YP_008566203.1 CDS LY180_15695 NC_022364.1 3301847 3302635 R seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology.; LigB family dioxygenase complement(3301847..3302635) Escherichia coli LY180 16980809 YP_008566204.1 CDS LY180_15700 NC_022364.1 3302778 3303551 D Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc transporter ZupT 3302778..3303551 Escherichia coli LY180 16980810 YP_008566205.1 CDS LY180_15705 NC_022364.1 3303609 3303779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3303609..3303779) Escherichia coli LY180 16980811 YP_008566206.1 CDS ribB NC_022364.1 3304041 3304694 R DHBP synthase; functions during riboflavin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(3304041..3304694) Escherichia coli LY180 16980812 YP_008566207.1 CDS LY180_15715 NC_022364.1 3305068 3305358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3305068..3305358 Escherichia coli LY180 16980813 YP_008566208.1 CDS LY180_15720 NC_022364.1 3305641 3306192 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3305641..3306192 Escherichia coli LY180 16980814 YP_008566209.1 CDS LY180_15725 NC_022364.1 3306252 3308756 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial outer membrane usher protein StdB 3306252..3308756 Escherichia coli LY180 16980815 YP_008566210.1 CDS LY180_15730 NC_022364.1 3308826 3309521 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3308826..3309521 Escherichia coli LY180 16980816 YP_008566211.1 CDS LY180_15735 NC_022364.1 3309523 3310587 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3309523..3310587 Escherichia coli LY180 16980817 YP_008566212.1 CDS LY180_15740 NC_022364.1 3310630 3310830 R Involved in glycogen synthesis. May be involved in glycogen priming; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthesis protein GlgS complement(3310630..3310830) Escherichia coli LY180 16980818 YP_008566213.1 CDS LY180_15745 NC_022364.1 3311099 3311728 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3311099..3311728 Escherichia coli LY180 16980819 YP_008566214.1 CDS LY180_15750 NC_022364.1 3311755 3313416 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3311755..3313416 Escherichia coli LY180 16980820 YP_008566215.1 CDS LY180_15755 NC_022364.1 3314210 3315643 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3314210..3315643) Escherichia coli LY180 16980821 YP_008566216.1 CDS LY180_15760 NC_022364.1 3315691 3318531 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(3315691..3318531) Escherichia coli LY180 16980822 YP_008566217.1 CDS LY180_15765 NC_022364.1 3318554 3319855 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3318554..3319855) Escherichia coli LY180 16980823 YP_008566218.1 CDS LY180_15770 NC_022364.1 3320097 3320717 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3320097..3320717 Escherichia coli LY180 16980824 YP_008566219.1 CDS LY180_15775 NC_022364.1 3320781 3322019 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA nucleotidyl transferase 3320781..3322019 Escherichia coli LY180 16980825 YP_008566220.1 CDS LY180_15780 NC_022364.1 3322182 3323003 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP pyrophosphate phosphatase complement(3322182..3323003) Escherichia coli LY180 16980826 YP_008566221.1 CDS folB NC_022364.1 3323093 3323461 R catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroneopterin triphosphate 2'-epimerase complement(3323093..3323461) Escherichia coli LY180 16980827 YP_008566222.1 CDS LY180_15790 NC_022364.1 3323566 3324183 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase 3323566..3324183 Escherichia coli LY180 16980828 YP_008566223.1 CDS LY180_15795 NC_022364.1 3324196 3325128 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator complement(3324196..3325128) Escherichia coli LY180 16980829 YP_008566224.1 CDS LY180_15800 NC_022364.1 3325335 3326246 D Involved in the tartrate degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartrate dehydratase subunit alpha 3325335..3326246 Escherichia coli LY180 16980830 YP_008566225.1 CDS LY180_15805 NC_022364.1 3326243 3326848 D Involved in the tartrate degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; L(+)-tartrate dehydratase subunit beta 3326243..3326848 Escherichia coli LY180 16980831 YP_008566226.1 CDS LY180_15810 NC_022364.1 3326897 3328360 D involved in the transport of L-tartrate into the cell with the export of succinate out of the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter 3326897..3328360 Escherichia coli LY180 16980832 YP_008566227.1 CDS LY180_15815 NC_022364.1 3328403 3329416 R universal genome maintenance protein; Kae1/Qri7/OSGEP/YgjD family protein; in Archaea, some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex; kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32); in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32; the protein is essential in Escherichia coli and Bacillus subtilis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UGMP family protein complement(3328403..3329416) Escherichia coli LY180 16980833 YP_008566228.1 CDS rpsU NC_022364.1 3329653 3329868 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S21 3329653..3329868 Escherichia coli LY180 16980834 YP_008566229.1 CDS dnaG NC_022364.1 3329979 3331724 D synthesizes RNA primers at the replication forks; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA primase 3329979..3331724 Escherichia coli LY180 16980835 YP_008566230.1 CDS LY180_15830 NC_022364.1 3331919 3333760 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase sigma factor RpoD 3331919..3333760 Escherichia coli LY180 16980836 YP_008566231.1 CDS LY180_15835 NC_022364.1 3333838 3334344 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA glycosylase complement(3333838..3334344) Escherichia coli LY180 16980837 YP_008566232.1 CDS LY180_15845 NC_022364.1 3334598 3335362 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase complement(3334598..3335362) Escherichia coli LY180 16980839 YP_008566233.1 CDS LY180_15850 NC_022364.1 3335639 3336262 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3335639..3336262 Escherichia coli LY180 16980840 YP_008566234.1 CDS LY180_15855 NC_022364.1 3336416 3337936 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aerotaxis receptor complement(3336416..3337936) Escherichia coli LY180 16980841 YP_008566235.1 CDS LY180_15860 NC_022364.1 3338243 3339733 D catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; putrescine--2-oxoglutarate aminotransferase 3338243..3339733 Escherichia coli LY180 16980842 YP_008566236.1 CDS LY180_15865 NC_022364.1 3339775 3340107 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA synthetase complement(3339775..3340107) Escherichia coli LY180 16980843 YP_008566237.1 CDS LY180_15870 NC_022364.1 3340326 3341309 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LacI family transcriptional regulator 3340326..3341309 Escherichia coli LY180 16980844 YP_008566238.1 CDS ebgA NC_022364.1 3341493 3344585 D in Escherichia coli this is the second beta-galactosidase system; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase subunit alpha 3341493..3344585 Escherichia coli LY180 16980845 YP_008566239.1 CDS LY180_15880 NC_022364.1 3344582 3344911 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3344582..3344911 Escherichia coli LY180 16980846 YP_008566240.1 CDS ebgC NC_022364.1 3346033 3346368 D in Escherichia coli this is the second beta-galactosidase system; Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-D-galactosidase subunit beta 3346033..3346368 Escherichia coli LY180 16980847 YP_008566241.1 CDS LY180_15890 NC_022364.1 3346431 3347864 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid permease 3346431..3347864 Escherichia coli LY180 16980848 YP_008566242.1 CDS LY180_15895 NC_022364.1 3347998 3349068 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3347998..3349068 Escherichia coli LY180 16980849 YP_008566243.1 CDS LY180_15900 NC_022364.1 3349085 3351436 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase 3349085..3351436 Escherichia coli LY180 16980850 YP_008566244.1 CDS fadH NC_022364.1 3351762 3353780 D catalyzes the formation of trans-2- enoyl-CoA from 2,4-dienoyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,4-dienoyl-CoA reductase 3351762..3353780 Escherichia coli LY180 16980851 YP_008566245.1 CDS LY180_15910 NC_022364.1 3353825 3354241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator complement(3353825..3354241) Escherichia coli LY180 16980852 YP_008566246.1 CDS LY180_15915 NC_022364.1 3354512 3355648 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3354512..3355648) Escherichia coli LY180 16980853 YP_008566247.1 CDS LY180_15920 NC_022364.1 3355733 3356236 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3355733..3356236 Escherichia coli LY180 16980854 YP_008566248.1 CDS LY180_15925 NC_022364.1 3356313 3356996 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3356313..3356996 Escherichia coli LY180 16980855 YP_008566249.1 CDS LY180_15930 NC_022364.1 3357057 3358061 D Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 3357057..3358061 Escherichia coli LY180 16980856 YP_008566250.1 CDS LY180_15935 NC_022364.1 3358344 3359309 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3358344..3359309 Escherichia coli LY180 16980857 YP_008566251.1 CDS LY180_15940 NC_022364.1 3359708 3360952 D involved in the import of serine and threonine coupled with the import of sodium; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter 3359708..3360952 Escherichia coli LY180 16980858 YP_008566252.1 CDS LY180_15945 NC_022364.1 3360957 3361508 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3360957..3361508) Escherichia coli LY180 16980859 YP_008566253.1 CDS LY180_15950 NC_022364.1 3361591 3363078 R Derived by automated computational analysis using gene prediction method: Protein Homology.; altronate hydrolase complement(3361591..3363078) Escherichia coli LY180 16980860 YP_008566254.1 CDS LY180_15955 NC_022364.1 3363093 3364505 R catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucuronate isomerase complement(3363093..3364505) Escherichia coli LY180 16980861 YP_008566255.1 CDS LY180_15960 NC_022364.1 3364868 3366286 D involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.; hexuronate transporter ExuT 3364868..3366286 Escherichia coli LY180 16980862 YP_008566256.1 CDS LY180_15965 NC_022364.1 3366374 3367006 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; minor pilin and initiator complement(3366374..3367006) Escherichia coli LY180 16980863 YP_008566257.1 CDS LY180_15970 NC_022364.1 3367459 3370143 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3367459..3370143) Escherichia coli LY180 16980864 YP_008566258.1 CDS LY180_15975 NC_022364.1 3370235 3370735 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(3370235..3370735) Escherichia coli LY180 16980865 YP_008566259.1 CDS LY180_15980 NC_022364.1 3370765 3371481 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; fimbrial protein complement(3370765..3371481) Escherichia coli LY180 16980866 YP_008566260.1 CDS LY180_15985 NC_022364.1 3371777 3372553 D regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3371777..3372553 Escherichia coli LY180 16980867 YP_008566261.1 CDS LY180_15990 NC_022364.1 3372898 3373560 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3372898..3373560 Escherichia coli LY180 16980868 YP_008566262.1 CDS LY180_15995 NC_022364.1 3373564 3373947 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3373564..3373947 Escherichia coli LY180 16980869 YP_008566263.1 CDS LY180_16000 NC_022364.1 3374094 3374462 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3374094..3374462 Escherichia coli LY180 16980870 YP_008566264.1 CDS LY180_16005 NC_022364.1 3374500 3374805 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3374500..3374805 Escherichia coli LY180 16980871 YP_008566265.1 CDS LY180_16010 NC_022364.1 3374808 3375212 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3374808..3375212 Escherichia coli LY180 16980872 YP_008566266.1 CDS LY180_16015 NC_022364.1 3375202 3375501 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3375202..3375501 Escherichia coli LY180 16980873 YP_008566267.1 CDS LY180_16020 NC_022364.1 3375687 3376079 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3375687..3376079 Escherichia coli LY180 16980874 YP_008566268.1 CDS LY180_16025 NC_022364.1 3376149 3376274 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3376149..3376274 Escherichia coli LY180 16980875 YP_008566269.1 CDS LY180_16030 NC_022364.1 3377701 3378474 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3377701..3378474 Escherichia coli LY180 16980876 YP_008566270.1 CDS LY180_16035 NC_022364.1 3378559 3378642 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3378559..3378642) Escherichia coli LY180 16980877 YP_008566271.1 CDS LY180_16040 NC_022364.1 3378767 3379132 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3378767..3379132 Escherichia coli LY180 16980878 YP_008566272.1 CDS LY180_16045 NC_022364.1 3379374 3379730 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3379374..3379730 Escherichia coli LY180 16980879 YP_008566273.1 CDS LY180_16050 NC_022364.1 3379781 3380677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator complement(3379781..3380677) Escherichia coli LY180 16980880 YP_008566274.1 CDS LY180_16055 NC_022364.1 3380782 3381483 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pirin 3380782..3381483 Escherichia coli LY180 16980881 YP_008566275.1 CDS LY180_16060 NC_022364.1 3381506 3381670 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3381506..3381670 Escherichia coli LY180 16980882 YP_008566276.1 CDS LY180_16065 NC_022364.1 3381882 3383192 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3381882..3383192) Escherichia coli LY180 16980883 YP_008566277.1 CDS LY180_16070 NC_022364.1 3383220 3384551 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3383220..3384551) Escherichia coli LY180 16980884 YP_008566278.1 CDS LY180_16075 NC_022364.1 3384826 3386190 R catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-serine dehydratase complement(3384826..3386190) Escherichia coli LY180 16980885 YP_008566279.1 CDS LY180_16080 NC_022364.1 3386262 3386651 R has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP complement(3386262..3386651) Escherichia coli LY180 16980886 YP_008566280.1 CDS LY180_16085 NC_022364.1 3386665 3388959 R formate acetyltransferase; catalyzes the formation of formate and acetyl-CoA from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; keto-acid formate acetyltransferase complement(3386665..3388959) Escherichia coli LY180 16980887 YP_008566281.1 CDS LY180_16090 NC_022364.1 3388993 3390201 R catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; propionate/acetate kinase complement(3388993..3390201) Escherichia coli LY180 16980888 YP_008566282.1 CDS LY180_16095 NC_022364.1 3390227 3391558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine transporter complement(3390227..3391558) Escherichia coli LY180 16980889 YP_008566283.1 CDS LY180_16100 NC_022364.1 3391580 3392569 R catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase complement(3391580..3392569) Escherichia coli LY180 16980890 YP_008566284.1 CDS LY180_16105 NC_022364.1 3392668 3393606 R regulates the tdcABCDEFG operon which is involved in amino acid degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3392668..3393606) Escherichia coli LY180 16980891 YP_008566285.1 CDS LY180_16110 NC_022364.1 3394395 3394934 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3394395..3394934 Escherichia coli LY180 16980892 YP_008566286.1 CDS LY180_16115 NC_022364.1 3394956 3396143 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3394956..3396143 Escherichia coli LY180 16980893 YP_008566287.1 CDS LY180_16120 NC_022364.1 3396246 3396368 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3396246..3396368 Escherichia coli LY180 16980894 YP_008566288.1 CDS LY180_16125 NC_022364.1 3396470 3396586 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3396470..3396586) Escherichia coli LY180 16980895 YP_008566289.1 CDS LY180_16130 NC_022364.1 3396583 3396699 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3396583..3396699) Escherichia coli LY180 16980896 YP_008566290.1 CDS LY180_16135 NC_022364.1 3397166 3398311 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerate kinase complement(3397166..3398311) Escherichia coli LY180 16980897 YP_008566291.1 CDS garR NC_022364.1 3398408 3399307 R catalyzes the reduction of tartronate semialdehyde to glycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; tartronate semialdehyde reductase complement(3398408..3399307) Escherichia coli LY180 16980898 YP_008566292.1 CDS LY180_16145 NC_022364.1 3399328 3400098 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3399328..3400098) Escherichia coli LY180 16980899 YP_008566293.1 CDS LY180_16150 NC_022364.1 3400114 3401448 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate transporter complement(3400114..3401448) Escherichia coli LY180 16980900 YP_008566294.1 CDS LY180_16155 NC_022364.1 3401469 3401594 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3401469..3401594 Escherichia coli LY180 16980901 YP_008566295.1 CDS garD NC_022364.1 3401823 3403394 D catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; galactarate dehydrogenase 3401823..3403394 Escherichia coli LY180 16980902 YP_008566296.1 CDS LY180_16165 NC_022364.1 3403878 3404342 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin YhaV 3403878..3404342 Escherichia coli LY180 16980903 YP_008566297.1 CDS LY180_16170 NC_022364.1 3404397 3405206 R transcriptional repressor for the agaZVWA and agaSYBCDI operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator complement(3404397..3405206) Escherichia coli LY180 16980904 YP_008566298.1 CDS LY180_16175 NC_022364.1 3405455 3406735 D with KbaY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1,6-bisphosphate; subunit Z may act as a chaperone for the Y subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase 3405455..3406735 Escherichia coli LY180 16980905 YP_008566299.1 CDS LY180_16180 NC_022364.1 3406758 3407231 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIB 3406758..3407231 Escherichia coli LY180 16980906 YP_008566300.1 CDS LY180_16185 NC_022364.1 3407242 3408021 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIC 3407242..3408021 Escherichia coli LY180 16980907 YP_008566301.1 CDS LY180_16190 NC_022364.1 3408011 3408889 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IID 3408011..3408889 Escherichia coli LY180 16980908 YP_008566302.1 CDS LY180_16195 NC_022364.1 3408907 3409341 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIA 3408907..3409341 Escherichia coli LY180 16980909 YP_008566303.1 CDS LY180_16200 NC_022364.1 3409338 3410471 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; N-acetylglucosamine-6-phosphate deacetylase 3409338..3410471 Escherichia coli LY180 16980910 YP_008566304.1 CDS LY180_16205 NC_022364.1 3410821 3411975 D Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose isomerase 3410821..3411975 Escherichia coli LY180 16980911 YP_008566305.1 CDS kbaY NC_022364.1 3411988 3412848 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; tagatose-bisphosphate aldolase 3411988..3412848 Escherichia coli LY180 16980912 YP_008566306.1 CDS LY180_16215 NC_022364.1 3413015 3413491 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIB 3413015..3413491 Escherichia coli LY180 16980913 YP_008566307.1 CDS LY180_16220 NC_022364.1 3413530 3414333 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IIC 3413530..3414333 Escherichia coli LY180 16980914 YP_008566308.1 CDS LY180_16225 NC_022364.1 3414323 3415114 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IID with IIC forms the translocation channel; involved in N-acetylgalactosamine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS N-acetylgalactosamine transporter subunit IID 3414323..3415114 Escherichia coli LY180 16980915 YP_008566309.1 CDS LY180_16230 NC_022364.1 3415115 3415870 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactosamine-6-phosphate isomerase 3415115..3415870 Escherichia coli LY180 16980916 YP_008566310.1 CDS LY180_16235 NC_022364.1 3416270 3416854 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3416270..3416854 Escherichia coli LY180 16980917 YP_008566311.1 CDS LY180_16240 NC_022364.1 3416934 3417629 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3416934..3417629 Escherichia coli LY180 16980918 YP_008566312.1 CDS LY180_16245 NC_022364.1 3417659 3420175 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3417659..3420175 Escherichia coli LY180 16980919 YP_008566313.1 CDS LY180_16250 NC_022364.1 3420186 3421277 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein 3420186..3421277 Escherichia coli LY180 16980920 YP_008566314.1 CDS LY180_16255 NC_022364.1 3421320 3422180 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(3421320..3422180) Escherichia coli LY180 16980921 YP_008566315.1 CDS LY180_16260 NC_022364.1 3422244 3424280 D Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein activator LpoA 3422244..3424280 Escherichia coli LY180 16980922 YP_008566316.1 CDS LY180_16265 NC_022364.1 3424238 3424633 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3424238..3424633 Escherichia coli LY180 16980923 YP_008566317.1 CDS LY180_16270 NC_022364.1 3424653 3425243 D Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; DnaA initiator-associating protein DiaA 3424653..3425243 Escherichia coli LY180 16980924 YP_008566318.1 CDS LY180_16275 NC_022364.1 3425253 3425828 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3425253..3425828 Escherichia coli LY180 16980925 YP_008566319.1 CDS LY180_16280 NC_022364.1 3425942 3426982 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3425942..3426982) Escherichia coli LY180 16980926 YP_008566320.1 CDS LY180_16285 NC_022364.1 3427055 3427690 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3427055..3427690) Escherichia coli LY180 16980927 YP_008566321.1 CDS LY180_16290 NC_022364.1 3427818 3428336 D Derived by automated computational analysis using gene prediction method: Protein Homology.; general stress protein 3427818..3428336 Escherichia coli LY180 16980928 YP_008566322.1 CDS LY180_16295 NC_022364.1 3428316 3428759 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3428316..3428759) Escherichia coli LY180 16980929 YP_008566323.1 CDS LY180_16300 NC_022364.1 3428810 3429112 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GIY-YIG nuclease 3428810..3429112 Escherichia coli LY180 16980930 YP_008566324.1 CDS LY180_16305 NC_022364.1 3429099 3429602 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(3429099..3429602) Escherichia coli LY180 16980931 YP_008566325.1 CDS LY180_16310 NC_022364.1 3429596 3430120 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3429596..3430120) Escherichia coli LY180 16980932 YP_008566326.1 CDS LY180_16315 NC_022364.1 3430329 3431324 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3430329..3431324 Escherichia coli LY180 16980933 YP_008566327.1 CDS LY180_16320 NC_022364.1 3431333 3432211 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protease 3431333..3432211 Escherichia coli LY180 16980934 YP_008566328.1 CDS LY180_16325 NC_022364.1 3432417 3433424 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3432417..3433424 Escherichia coli LY180 16980935 YP_008566329.1 CDS LY180_16330 NC_022364.1 3433542 3434786 R tryptophan transporter of high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease complement(3433542..3434786) Escherichia coli LY180 16980936 YP_008566330.1 CDS LY180_16335 NC_022364.1 3434940 3436829 R participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(3434940..3436829) Escherichia coli LY180 16980937 YP_008566331.1 CDS LY180_16340 NC_022364.1 3437009 3437893 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoprotein NlpI complement(3437009..3437893) Escherichia coli LY180 16980938 YP_008566332.1 CDS LY180_16345 NC_022364.1 3438002 3440137 R Derived by automated computational analysis using gene prediction method: Protein Homology.; polynucleotide phosphorylase/polyadenylase complement(3438002..3440137) Escherichia coli LY180 16980939 YP_008566333.1 CDS LY180_16350 NC_022364.1 3440384 3440653 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S15 complement(3440384..3440653) Escherichia coli LY180 16980940 YP_008566334.1 CDS truB NC_022364.1 3440802 3441746 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA pseudouridine synthase B complement(3440802..3441746) Escherichia coli LY180 16980941 YP_008566335.1 CDS rbfA NC_022364.1 3441746 3442147 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-binding factor A complement(3441746..3442147) Escherichia coli LY180 16980942 YP_008566336.1 CDS infB NC_022364.1 3442311 3444983 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; translation initiation factor IF-2 complement(3442311..3444983) Escherichia coli LY180 16980943 YP_008566337.1 CDS nusA NC_022364.1 3445008 3446495 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M54 complement(3445008..3446495) Escherichia coli LY180 16980944 YP_008566338.1 CDS LY180_16375 NC_022364.1 3446523 3446981 R required for the maturation of the 30S ribosomal subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome maturation protein RimP complement(3446523..3446981) Escherichia coli LY180 16980945 YP_008566339.1 CDS LY180_16385 NC_022364.1 3447606 3448949 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate synthase 3447606..3448949 Escherichia coli LY180 16980947 YP_008566340.1 CDS LY180_16390 NC_022364.1 3448957 3450582 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate starvation-inducible protein PsiE complement(3448957..3450582) Escherichia coli LY180 16980948 YP_008566341.1 CDS secG NC_022364.1 3451142 3451474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecG complement(3451142..3451474) Escherichia coli LY180 16980950 YP_008566342.1 CDS glmM NC_022364.1 3451702 3453039 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglucosamine mutase complement(3451702..3453039) Escherichia coli LY180 16980951 YP_008566343.1 CDS folP NC_022364.1 3453032 3453880 R catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydropteroate synthase complement(3453032..3453880) Escherichia coli LY180 16980952 YP_008566344.1 CDS hflB NC_022364.1 3453970 3455904 R inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent metalloprotease complement(3453970..3455904) Escherichia coli LY180 16980953 YP_008566345.1 CDS rrmJ NC_022364.1 3456004 3456633 R Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA methyltransferase complement(3456004..3456633) Escherichia coli LY180 16980954 YP_008566346.1 CDS LY180_16425 NC_022364.1 3456759 3457052 D RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein YhbY 3456759..3457052 Escherichia coli LY180 16980955 YP_008566347.1 CDS greA NC_022364.1 3457208 3457684 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreA complement(3457208..3457684) Escherichia coli LY180 16980956 YP_008566348.1 CDS LY180_16435 NC_022364.1 3457932 3459365 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-alanyl-D-alanine carboxypeptidase 3457932..3459365 Escherichia coli LY180 16980957 YP_008566349.1 CDS obgE NC_022364.1 3459405 3460577 R ObgE; essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase CgtA complement(3459405..3460577) Escherichia coli LY180 16980958 YP_008566350.1 CDS LY180_16445 NC_022364.1 3460593 3461558 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3460593..3461558) Escherichia coli LY180 16980959 YP_008566351.1 CDS rpmA NC_022364.1 3461685 3461942 R involved in the peptidyltransferase reaction during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L27 complement(3461685..3461942) Escherichia coli LY180 16980960 YP_008566352.1 CDS rplU NC_022364.1 3461963 3462274 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L21 complement(3461963..3462274) Escherichia coli LY180 16980961 YP_008566353.1 CDS LY180_16460 NC_022364.1 3462533 3463504 D Derived by automated computational analysis using gene prediction method: Protein Homology.; octaprenyl diphosphate synthase 3462533..3463504 Escherichia coli LY180 16980962 YP_008566354.1 CDS LY180_16465 NC_022364.1 3463732 3464010 D activator of maltose metabolism genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3463732..3464010 Escherichia coli LY180 16980963 YP_008566355.1 CDS LY180_16470 NC_022364.1 3464058 3465317 R Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3464058..3465317) Escherichia coli LY180 16980964 YP_008566356.1 CDS LY180_16475 NC_022364.1 3465372 3465641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3465372..3465641) Escherichia coli LY180 16980965 YP_008566357.1 CDS LY180_16480 NC_022364.1 3465786 3466079 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein complement(3465786..3466079) Escherichia coli LY180 16980966 YP_008566358.1 CDS LY180_16485 NC_022364.1 3466079 3466714 R involved in maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter substrate-binding protein complement(3466079..3466714) Escherichia coli LY180 16980967 YP_008566359.1 CDS LY180_16490 NC_022364.1 3466733 3467299 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipid ABC transporter substrate-binding protein complement(3466733..3467299) Escherichia coli LY180 16980968 YP_008566360.1 CDS LY180_16495 NC_022364.1 3467289 3468071 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter permease complement(3467289..3468071) Escherichia coli LY180 16980969 YP_008566361.1 CDS LY180_16500 NC_022364.1 3468079 3468888 R ABC transporter maintaining outer membrane lipid asymmetry; Derived by automated computational analysis using gene prediction method: Protein Homology.; organic solvent ABC transporter ATP-binding protein complement(3468079..3468888) Escherichia coli LY180 16980970 YP_008566362.1 CDS LY180_16505 NC_022364.1 3469098 3470075 D YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 3469098..3470075 Escherichia coli LY180 16980971 YP_008566363.1 CDS LY180_16510 NC_022364.1 3470089 3471075 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-arabinose 5-phosphate isomerase 3470089..3471075 Escherichia coli LY180 16980972 YP_008566364.1 CDS LY180_16515 NC_022364.1 3471096 3471662 D forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3471096..3471662 Escherichia coli LY180 16980973 YP_008566365.1 CDS LY180_16520 NC_022364.1 3471659 3472234 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3471659..3472234 Escherichia coli LY180 16980974 YP_008566366.1 CDS LY180_16525 NC_022364.1 3472203 3472760 D LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 3472203..3472760 Escherichia coli LY180 16980975 YP_008566367.1 CDS LY180_16530 NC_022364.1 3472767 3473492 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipopolysaccharide ABC transporter ATP-binding protein 3472767..3473492 Escherichia coli LY180 16980976 YP_008566368.1 CDS LY180_16535 NC_022364.1 3473540 3474973 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-54 3473540..3474973 Escherichia coli LY180 16980977 YP_008566369.1 CDS LY180_16540 NC_022364.1 3474996 3475283 D YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome hibernation promoting factor HPF 3474996..3475283 Escherichia coli LY180 16980978 YP_008566370.1 CDS LY180_16545 NC_022364.1 3475401 3475892 D involved in nitrogen metabolism; protein IIA is phosphorylated by enzyme I(Ntr); Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS sugar transporter subunit IIA 3475401..3475892 Escherichia coli LY180 16980979 YP_008566371.1 CDS LY180_16550 NC_022364.1 3475938 3476792 D glucosamine-6-phosphate regulated; inactivates the glmS upregulator glmZ; Derived by automated computational analysis using gene prediction method: Protein Homology.; glmZ(sRNA)-inactivating NTPase 3475938..3476792 Escherichia coli LY180 16980980 YP_008566372.1 CDS LY180_16555 NC_022364.1 3476789 3477061 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphohistidinoprotein-hexose phosphotransferase 3476789..3477061 Escherichia coli LY180 16980981 YP_008566373.1 CDS LY180_16560 NC_022364.1 3477275 3477907 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3477275..3477907 Escherichia coli LY180 16980982 YP_008566374.1 CDS mtgA NC_022364.1 3477904 3478632 R glycosyltransferase; polymerizes glycan strands in the peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; monofunctional biosynthetic peptidoglycan transglycosylase complement(3477904..3478632) Escherichia coli LY180 16980983 YP_008566375.1 CDS LY180_16570 NC_022364.1 3478629 3479282 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isoprenoid biosynthesis protein complement(3478629..3479282) Escherichia coli LY180 16980984 YP_008566376.1 CDS LY180_16575 NC_022364.1 3479512 3481848 R sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.; aerobic respiration control sensor protein ArcB complement(3479512..3481848) Escherichia coli LY180 16980985 YP_008566377.1 CDS LY180_16580 NC_022364.1 3481944 3482906 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3481944..3482906) Escherichia coli LY180 16980986 YP_008566378.1 CDS LY180_16585 NC_022364.1 3482919 3483023 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3482919..3483023) Escherichia coli LY180 16980987 YP_008566379.1 CDS gltB NC_022364.1 3483440 3488008 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit alpha 3483440..3488008 Escherichia coli LY180 16980988 YP_008566380.1 CDS LY180_16595 NC_022364.1 3488021 3489439 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate synthase subunit beta 3488021..3489439 Escherichia coli LY180 16980989 YP_008566381.1 CDS LY180_16600 NC_022364.1 3489623 3490750 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3489623..3490750 Escherichia coli LY180 16980990 YP_008566382.1 CDS LY180_16605 NC_022364.1 3490810 3491274 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3490810..3491274) Escherichia coli LY180 16980991 YP_008566383.1 CDS LY180_16610 NC_022364.1 3491271 3492146 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine kinase complement(3491271..3492146) Escherichia coli LY180 16980992 YP_008566384.1 CDS LY180_16615 NC_022364.1 3492143 3492832 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmannosamine-6-phosphate 2-epimerase complement(3492143..3492832) Escherichia coli LY180 16980993 YP_008566385.1 CDS LY180_16620 NC_022364.1 3492880 3494370 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sialic acid transporter complement(3492880..3494370) Escherichia coli LY180 16980994 YP_008566386.1 CDS LY180_16625 NC_022364.1 3494479 3495372 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminate lyase complement(3494479..3495372) Escherichia coli LY180 16980995 YP_008566387.1 CDS LY180_16630 NC_022364.1 3495494 3496285 R Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3495494..3496285) Escherichia coli LY180 16980996 YP_008566388.1 CDS LY180_16635 NC_022364.1 3496665 3498032 D YhcL; uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters; probable role in transport of carboxylates across the inner membrane from the periplasm; its encoding gene is not essential for growth and is probably cryptic; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter 3496665..3498032 Escherichia coli LY180 16980997 YP_008566389.1 CDS LY180_16640 NC_022364.1 3498075 3498572 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(3498075..3498572) Escherichia coli LY180 16980998 YP_008566390.1 CDS sspA NC_022364.1 3498578 3499216 R transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; stringent starvation protein A complement(3498578..3499216) Escherichia coli LY180 16980999 YP_008566391.1 CDS LY180_16650 NC_022364.1 3499611 3500003 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S9 complement(3499611..3500003) Escherichia coli LY180 16981000 YP_008566392.1 CDS LY180_16655 NC_022364.1 3500019 3500447 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L13 complement(3500019..3500447) Escherichia coli LY180 16981001 YP_008566393.1 CDS LY180_16660 NC_022364.1 3500666 3501793 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3500666..3501793) Escherichia coli LY180 16981002 YP_008566394.1 CDS LY180_16665 NC_022364.1 3501987 3502385 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3501987..3502385 Escherichia coli LY180 16981003 YP_008566395.1 CDS LY180_16670 NC_022364.1 3502539 3503906 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease DegQ 3502539..3503906 Escherichia coli LY180 16981004 YP_008566396.1 CDS LY180_16675 NC_022364.1 3503996 3505063 D Derived by automated computational analysis using gene prediction method: Protein Homology.; serine endoprotease 3503996..3505063 Escherichia coli LY180 16981005 YP_008566397.1 CDS LY180_16680 NC_022364.1 3505126 3506064 R oxidizes malate to oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate dehydrogenase complement(3505126..3506064) Escherichia coli LY180 16981006 YP_008566398.1 CDS LY180_16685 NC_022364.1 3506499 3506969 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine repressor 3506499..3506969 Escherichia coli LY180 16981007 YP_008566399.1 CDS LY180_16690 NC_022364.1 3507334 3507597 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3507334..3507597 Escherichia coli LY180 16981008 YP_008566400.1 CDS LY180_16695 NC_022364.1 3507653 3507925 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3507653..3507925) Escherichia coli LY180 16981009 YP_008566401.1 CDS LY180_16700 NC_022364.1 3508017 3509984 R with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3508017..3509984) Escherichia coli LY180 16981010 YP_008566402.1 CDS LY180_16705 NC_022364.1 3509990 3510922 R with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; hydroxybenzoic acid transporter complement(3509990..3510922) Escherichia coli LY180 16981011 YP_008566403.1 CDS LY180_16710 NC_022364.1 3510930 3511202 R membrane protein AaeX; the gene is a member of the aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transfer flavoprotein FixA complement(3510930..3511202) Escherichia coli LY180 16981012 YP_008566404.1 CDS LY180_16715 NC_022364.1 3511316 3512245 D for aaeXAB operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3511316..3512245 Escherichia coli LY180 16981013 YP_008566405.1 CDS tldD NC_022364.1 3512379 3513824 R responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protease TldD complement(3512379..3513824) Escherichia coli LY180 16981014 YP_008566406.1 CDS LY180_16725 NC_022364.1 3514163 3517963 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3514163..3517963) Escherichia coli LY180 16981015 YP_008566407.1 CDS LY180_16730 NC_022364.1 3518031 3519500 R involved in the processing of the 5'end of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease G complement(3518031..3519500) Escherichia coli LY180 16981016 YP_008566408.1 CDS LY180_16735 NC_022364.1 3519490 3520083 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; Maf complement(3519490..3520083) Escherichia coli LY180 16981017 YP_008566409.1 CDS LY180_16740 NC_022364.1 3520092 3520580 R part of cell wall structural complex MreBCD; transmembrane component; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreD complement(3520092..3520580) Escherichia coli LY180 16981018 YP_008566410.1 CDS LY180_16745 NC_022364.1 3520580 3521683 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein MreC complement(3520580..3521683) Escherichia coli LY180 16981019 YP_008566411.1 CDS LY180_16750 NC_022364.1 3521749 3522792 R functions in MreBCD complex in some organisms; Derived by automated computational analysis using gene prediction method: Protein Homology.; rod shape-determining protein Mbl complement(3521749..3522792) Escherichia coli LY180 16981020 YP_008566412.1 CDS LY180_16755 NC_022364.1 3523097 3525037 R regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3523097..3525037) Escherichia coli LY180 16981021 YP_008566413.1 CDS LY180_16760 NC_022364.1 3525189 3526163 D Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase 3525189..3526163 Escherichia coli LY180 16981022 YP_008566414.1 CDS LY180_16765 NC_022364.1 3527141 3527611 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxyl carrier protein 3527141..3527611 Escherichia coli LY180 16981023 YP_008566415.1 CDS LY180_16770 NC_022364.1 3527622 3528971 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA carboxylase biotin carboxylase subunit 3527622..3528971 Escherichia coli LY180 16981024 YP_008566416.1 CDS LY180_16775 NC_022364.1 3529080 3529322 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3529080..3529322 Escherichia coli LY180 16981025 YP_008566417.1 CDS panF NC_022364.1 3529312 3530763 D mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:pantothenate symporter 3529312..3530763 Escherichia coli LY180 16981026 YP_008566418.1 CDS prmA NC_022364.1 3530775 3531656 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosomal protein L11 methyltransferase 3530775..3531656 Escherichia coli LY180 16981027 YP_008566419.1 CDS LY180_16790 NC_022364.1 3531985 3532950 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase B 3531985..3532950 Escherichia coli LY180 16981028 YP_008566420.1 CDS fis NC_022364.1 3532976 3533272 D Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 3532976..3533272 Escherichia coli LY180 16981029 YP_008566421.1 CDS LY180_16800 NC_022364.1 3533358 3534242 D Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase 3533358..3534242 Escherichia coli LY180 16981030 YP_008566422.1 CDS LY180_16805 NC_022364.1 3534326 3534505 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3534326..3534505 Escherichia coli LY180 16981031 YP_008566423.1 CDS LY180_16810 NC_022364.1 3534508 3535170 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3534508..3535170) Escherichia coli LY180 16981032 YP_008566424.1 CDS LY180_16815 NC_022364.1 3535569 3536726 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acriflavine resistance protein E 3535569..3536726 Escherichia coli LY180 16981033 YP_008566425.1 CDS LY180_16820 NC_022364.1 3536738 3539842 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3536738..3539842 Escherichia coli LY180 16981034 YP_008566426.1 CDS LY180_16825 NC_022364.1 3540095 3540316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3540095..3540316 Escherichia coli LY180 16981035 YP_008566427.1 CDS LY180_16830 NC_022364.1 3540364 3540510 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3540364..3540510) Escherichia coli LY180 16981036 YP_008566428.1 CDS LY180_16835 NC_022364.1 3540747 3541772 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein 3540747..3541772 Escherichia coli LY180 16981037 YP_008566429.1 CDS LY180_16840 NC_022364.1 3541840 3543021 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 3541840..3543021 Escherichia coli LY180 16981038 YP_008566430.1 CDS LY180_16845 NC_022364.1 3543031 3544134 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 3543031..3544134 Escherichia coli LY180 16981039 YP_008566431.1 CDS LY180_16850 NC_022364.1 3544142 3544900 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter ATP-binding protein 3544142..3544900 Escherichia coli LY180 16981040 YP_008566432.1 CDS LY180_16890 NC_022364.1 3550758 3550922 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3550758..3550922) Escherichia coli LY180 16981048 YP_008566433.1 CDS LY180_16895 NC_022364.1 3550951 3551505 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3550951..3551505 Escherichia coli LY180 16981049 YP_008566434.1 CDS LY180_16900 NC_022364.1 3551481 3551738 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3551481..3551738) Escherichia coli LY180 16981050 YP_008566435.1 CDS LY180_16905 NC_022364.1 3551735 3552553 R Derived by automated computational analysis using gene prediction method: Protein Homology.; shikimate 5-dehydrogenase complement(3551735..3552553) Escherichia coli LY180 16981051 YP_008566436.1 CDS LY180_16910 NC_022364.1 3552558 3553130 R involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein complement(3552558..3553130) Escherichia coli LY180 16981052 YP_008566437.1 CDS LY180_16915 NC_022364.1 3553135 3553677 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3553135..3553677) Escherichia coli LY180 16981053 YP_008566438.1 CDS LY180_16920 NC_022364.1 3553706 3554179 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3553706..3554179) Escherichia coli LY180 16981054 YP_008566439.1 CDS LY180_16925 NC_022364.1 3554151 3555275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3554151..3555275) Escherichia coli LY180 16981055 YP_008566440.1 CDS LY180_16930 NC_022364.1 3555405 3555914 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide deformylase 3555405..3555914 Escherichia coli LY180 16981056 YP_008566441.1 CDS fmt NC_022364.1 3555929 3556876 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionyl-tRNA formyltransferase 3555929..3556876 Escherichia coli LY180 16981057 YP_008566442.1 CDS LY180_16940 NC_022364.1 3556922 3558211 D catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3556922..3558211 Escherichia coli LY180 16981058 YP_008566443.1 CDS trkA NC_022364.1 3558233 3559609 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter peripheral membrane protein 3558233..3559609 Escherichia coli LY180 16981059 YP_008566444.1 CDS mscL NC_022364.1 3559739 3560149 D forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; large-conductance mechanosensitive channel 3559739..3560149 Escherichia coli LY180 16981060 YP_008566445.1 CDS LY180_16955 NC_022364.1 3560146 3560364 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Alternative ribosome-rescue factor A complement(3560146..3560364) Escherichia coli LY180 16981061 YP_008566446.1 CDS zntR NC_022364.1 3560420 3560845 R mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc-responsive transcriptional regulator complement(3560420..3560845) Escherichia coli LY180 16981062 YP_008566447.1 CDS LY180_16965 NC_022364.1 3560856 3561224 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3560856..3561224) Escherichia coli LY180 16981063 YP_008566448.1 CDS rplQ NC_022364.1 3561331 3561714 R is a component of the macrolide binding site in the peptidyl transferase center; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L17 complement(3561331..3561714) Escherichia coli LY180 16981064 YP_008566449.1 CDS LY180_16975 NC_022364.1 3561755 3562744 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit alpha complement(3561755..3562744) Escherichia coli LY180 16981065 YP_008566450.1 CDS LY180_16980 NC_022364.1 3562770 3563390 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S4 complement(3562770..3563390) Escherichia coli LY180 16981066 YP_008566451.1 CDS LY180_16985 NC_022364.1 3563424 3563813 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S11 complement(3563424..3563813) Escherichia coli LY180 16981067 YP_008566452.1 CDS LY180_16990 NC_022364.1 3563830 3564186 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S13 complement(3563830..3564186) Escherichia coli LY180 16981068 YP_008566453.1 CDS LY180_16995 NC_022364.1 3564333 3564449 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L36 complement(3564333..3564449) Escherichia coli LY180 16981069 YP_008566454.1 CDS secY NC_022364.1 3564481 3565812 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecY complement(3564481..3565812) Escherichia coli LY180 16981070 YP_008566455.1 CDS LY180_17005 NC_022364.1 3565820 3566254 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L15 complement(3565820..3566254) Escherichia coli LY180 16981071 YP_008566456.1 CDS rpmD NC_022364.1 3566258 3566437 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L30 complement(3566258..3566437) Escherichia coli LY180 16981072 YP_008566457.1 CDS LY180_17015 NC_022364.1 3566441 3566944 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S5 complement(3566441..3566944) Escherichia coli LY180 16981073 YP_008566458.1 CDS LY180_17020 NC_022364.1 3566959 3567312 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L18 complement(3566959..3567312) Escherichia coli LY180 16981074 YP_008566459.1 CDS LY180_17025 NC_022364.1 3567322 3567855 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L6 complement(3567322..3567855) Escherichia coli LY180 16981075 YP_008566460.1 CDS LY180_17030 NC_022364.1 3567868 3568260 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S8 complement(3567868..3568260) Escherichia coli LY180 16981076 YP_008566461.1 CDS rpsN NC_022364.1 3568294 3568599 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S14 complement(3568294..3568599) Escherichia coli LY180 16981077 YP_008566462.1 CDS LY180_17040 NC_022364.1 3568614 3569153 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L5 complement(3568614..3569153) Escherichia coli LY180 16981078 YP_008566463.1 CDS rplX NC_022364.1 3569168 3569482 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L24 complement(3569168..3569482) Escherichia coli LY180 16981079 YP_008566464.1 CDS LY180_17050 NC_022364.1 3569493 3569864 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L14 complement(3569493..3569864) Escherichia coli LY180 16981080 YP_008566465.1 CDS LY180_17055 NC_022364.1 3570029 3570283 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S17 complement(3570029..3570283) Escherichia coli LY180 16981081 YP_008566466.1 CDS LY180_17060 NC_022364.1 3570283 3570474 R one of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L29 complement(3570283..3570474) Escherichia coli LY180 16981082 YP_008566467.1 CDS LY180_17065 NC_022364.1 3570474 3570884 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L16 complement(3570474..3570884) Escherichia coli LY180 16981083 YP_008566468.1 CDS LY180_17070 NC_022364.1 3570897 3571598 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S3 complement(3570897..3571598) Escherichia coli LY180 16981084 YP_008566469.1 CDS LY180_17075 NC_022364.1 3571616 3571948 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L22 complement(3571616..3571948) Escherichia coli LY180 16981085 YP_008566470.1 CDS rpsS NC_022364.1 3571963 3572241 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S19 complement(3571963..3572241) Escherichia coli LY180 16981086 YP_008566471.1 CDS LY180_17085 NC_022364.1 3572258 3573079 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L2 complement(3572258..3573079) Escherichia coli LY180 16981087 YP_008566472.1 CDS rplW NC_022364.1 3573097 3573399 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L23 complement(3573097..3573399) Escherichia coli LY180 16981088 YP_008566473.1 CDS rplD NC_022364.1 3573396 3574001 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L4 complement(3573396..3574001) Escherichia coli LY180 16981089 YP_008566474.1 CDS LY180_17100 NC_022364.1 3574012 3574641 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L3 complement(3574012..3574641) Escherichia coli LY180 16981090 YP_008566475.1 CDS rpsJ NC_022364.1 3574674 3574985 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S10 complement(3574674..3574985) Escherichia coli LY180 16981091 YP_008566476.1 CDS LY180_17110 NC_022364.1 3575364 3575831 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase A24 3575364..3575831 Escherichia coli LY180 16981092 YP_008566477.1 CDS LY180_17115 NC_022364.1 3575828 3576304 R iron storage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin complement(3575828..3576304) Escherichia coli LY180 16981093 YP_008566478.1 CDS LY180_17120 NC_022364.1 3576377 3576571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; bacterioferritin-associated ferredoxin complement(3576377..3576571) Escherichia coli LY180 16981094 YP_008566479.1 CDS tuf NC_022364.1 3576754 3577938 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu complement(3576754..3577938) Escherichia coli LY180 16981095 YP_008566480.1 CDS fusA NC_022364.1 3578009 3580123 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor G complement(3578009..3580123) Escherichia coli LY180 16981096 YP_008566481.1 CDS LY180_17135 NC_022364.1 3580220 3580690 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S7 complement(3580220..3580690) Escherichia coli LY180 16981097 YP_008566482.1 CDS LY180_17140 NC_022364.1 3580787 3581161 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S12 complement(3580787..3581161) Escherichia coli LY180 16981098 YP_008566483.1 CDS LY180_17145 NC_022364.1 3581287 3581574 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusB complement(3581287..3581574) Escherichia coli LY180 16981099 YP_008566484.1 CDS LY180_17150 NC_022364.1 3581582 3581941 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur relay protein TusC complement(3581582..3581941) Escherichia coli LY180 16981100 YP_008566485.1 CDS LY180_17155 NC_022364.1 3581941 3582327 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur transfer complex subunit TusD complement(3581941..3582327) Escherichia coli LY180 16981101 YP_008566486.1 CDS LY180_17160 NC_022364.1 3582327 3583049 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3582327..3583049) Escherichia coli LY180 16981102 YP_008566487.1 CDS LY180_17165 NC_022364.1 3583216 3584028 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3583216..3584028) Escherichia coli LY180 16981103 YP_008566488.1 CDS LY180_17170 NC_022364.1 3584249 3584467 D required for phi X174 lysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysis protein 3584249..3584467 Escherichia coli LY180 16981104 YP_008566489.1 CDS LY180_17175 NC_022364.1 3584516 3585106 R rotamase; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3584516..3585106) Escherichia coli LY180 16981105 YP_008566490.1 CDS LY180_17180 NC_022364.1 3585201 3585401 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3585201..3585401) Escherichia coli LY180 16981106 YP_008566491.1 CDS LY180_17185 NC_022364.1 3585411 3587216 R involved in potassium efflux; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3585411..3587216) Escherichia coli LY180 16981107 YP_008566492.1 CDS LY180_17190 NC_022364.1 3587216 3587770 R required for KefB activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter complement(3587216..3587770) Escherichia coli LY180 16981108 YP_008566493.1 CDS LY180_17195 NC_022364.1 3587898 3589811 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione ABC transporter ATP-binding protein 3587898..3589811 Escherichia coli LY180 16981109 YP_008566494.1 CDS LY180_17200 NC_022364.1 3589811 3590833 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 3589811..3590833 Escherichia coli LY180 16981110 YP_008566495.1 CDS LY180_17205 NC_022364.1 3590827 3591045 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3590827..3591045 Escherichia coli LY180 16981111 YP_008566496.1 CDS LY180_17210 NC_022364.1 3591099 3591968 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribulokinase 3591099..3591968 Escherichia coli LY180 16981112 YP_008566497.1 CDS LY180_17215 NC_022364.1 3592023 3592427 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3592023..3592427) Escherichia coli LY180 16981113 YP_008566498.1 CDS LY180_17220 NC_022364.1 3592729 3593361 D cAMP receptor protein; complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3592729..3593361 Escherichia coli LY180 16981114 YP_008566499.1 CDS LY180_17225 NC_022364.1 3593412 3595502 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3593412..3595502 Escherichia coli LY180 16981115 YP_008566500.1 CDS argD NC_022364.1 3595569 3596789 R DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; Derived by automated computational analysis using gene prediction method: Protein Homology.; succinyldiaminopimelate aminotransferase complement(3595569..3596789) Escherichia coli LY180 16981116 YP_008566501.1 CDS LY180_17235 NC_022364.1 3596875 3597438 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; anthranilate synthase subunit II complement(3596875..3597438) Escherichia coli LY180 16981117 YP_008566502.1 CDS LY180_17240 NC_022364.1 3597470 3598072 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell filamentation protein Fic complement(3597470..3598072) Escherichia coli LY180 16981118 YP_008566503.1 CDS LY180_17245 NC_022364.1 3598062 3598229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3598062..3598229) Escherichia coli LY180 16981119 YP_008566504.1 CDS LY180_17250 NC_022364.1 3598334 3598906 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(3598334..3598906) Escherichia coli LY180 16981120 YP_008566505.1 CDS LY180_17255 NC_022364.1 3599177 3600358 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3599177..3600358 Escherichia coli LY180 16981121 YP_008566506.1 CDS LY180_17260 NC_022364.1 3600620 3603163 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase subunit NirD 3600620..3603163 Escherichia coli LY180 16981122 YP_008566507.1 CDS nirD NC_022364.1 3603160 3603486 D involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase small subunit 3603160..3603486 Escherichia coli LY180 16981123 YP_008566508.1 CDS LY180_17270 NC_022364.1 3603613 3604419 D member of the FNT family of formate and nitrite transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite transporter NirC 3603613..3604419 Escherichia coli LY180 16981124 YP_008566509.1 CDS cysG NC_022364.1 3604438 3605811 D multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; Derived by automated computational analysis using gene prediction method: Protein Homology.; siroheme synthase 3604438..3605811 Escherichia coli LY180 16981125 YP_008566510.1 CDS LY180_17280 NC_022364.1 3606058 3606225 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3606058..3606225 Escherichia coli LY180 16981126 YP_008566511.1 CDS frlA NC_022364.1 3606520 3607857 D inner membrane protein possibly involved in fructoselysine transport; member of the flr operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructoselysine transporter 3606520..3607857 Escherichia coli LY180 16981127 YP_008566512.1 CDS frlB NC_022364.1 3607878 3608900 D catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructoselysine-6-P-deglycase 3607878..3608900 Escherichia coli LY180 16981128 YP_008566513.1 CDS LY180_17295 NC_022364.1 3608950 3609780 D YhfOP; YhfP; YhfO; FrlC; catalyzes the interconversion of fructoselysine and psicoselysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructoselysine 3-epimerase 3608950..3609780 Escherichia coli LY180 16981129 YP_008566514.1 CDS LY180_17300 NC_022364.1 3609777 3610562 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fructoselysine 6-kinase 3609777..3610562 Escherichia coli LY180 16981130 YP_008566515.1 CDS LY180_17305 NC_022364.1 3610662 3611393 D may act as a transcriptional regulator of a putative fructoselysine-induced operon containing the yhfM, yhfN, yhfO, yhfP, yhfQ, and yhfR genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 3610662..3611393 Escherichia coli LY180 16981131 YP_008566516.1 CDS LY180_17310 NC_022364.1 3611545 3612630 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3611545..3612630) Escherichia coli LY180 16981132 YP_008566517.1 CDS LY180_17315 NC_022364.1 3612642 3613946 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3612642..3613946) Escherichia coli LY180 16981133 YP_008566518.1 CDS LY180_17320 NC_022364.1 3613958 3614311 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3613958..3614311) Escherichia coli LY180 16981134 YP_008566519.1 CDS LY180_17325 NC_022364.1 3614322 3615200 R phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE); Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase complement(3614322..3615200) Escherichia coli LY180 16981135 YP_008566520.1 CDS LY180_17330 NC_022364.1 3615197 3616423 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mutase complement(3615197..3616423) Escherichia coli LY180 16981136 YP_008566521.1 CDS LY180_17335 NC_022364.1 3616423 3617586 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3616423..3617586) Escherichia coli LY180 16981137 YP_008566522.1 CDS LY180_17340 NC_022364.1 3617670 3618032 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3617670..3618032) Escherichia coli LY180 16981138 YP_008566523.1 CDS LY180_17345 NC_022364.1 3618049 3618954 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3618049..3618954) Escherichia coli LY180 16981139 YP_008566524.1 CDS LY180_17350 NC_022364.1 3619114 3620118 R Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophanyl-tRNA synthetase complement(3619114..3620118) Escherichia coli LY180 16981140 YP_008566525.1 CDS LY180_17355 NC_022364.1 3620111 3620869 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycolate phosphatase complement(3620111..3620869) Escherichia coli LY180 16981141 YP_008566526.1 CDS LY180_17360 NC_022364.1 3620862 3621539 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribulose-phosphate 3-epimerase complement(3620862..3621539) Escherichia coli LY180 16981142 YP_008566527.1 CDS LY180_17365 NC_022364.1 3621557 3622393 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA adenine methylase complement(3621557..3622393) Escherichia coli LY180 16981143 YP_008566528.1 CDS LY180_17370 NC_022364.1 3622500 3623786 R binds the septal ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein DamX complement(3622500..3623786) Escherichia coli LY180 16981144 YP_008566529.1 CDS aroB NC_022364.1 3623878 3624966 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-dehydroquinate synthase complement(3623878..3624966) Escherichia coli LY180 16981145 YP_008566530.1 CDS LY180_17380 NC_022364.1 3625023 3625700 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; shikimate kinase complement(3625023..3625700) Escherichia coli LY180 16981146 YP_008566531.1 CDS hofQ NC_022364.1 3625945 3627183 R outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin HofQ complement(3625945..3627183) Escherichia coli LY180 16981147 YP_008566532.1 CDS LY180_17390 NC_022364.1 3627489 3627929 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofO complement(3627489..3627929) Escherichia coli LY180 16981148 YP_008566533.1 CDS LY180_17395 NC_022364.1 3627913 3628452 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofN complement(3627913..3628452) Escherichia coli LY180 16981149 YP_008566534.1 CDS LY180_17400 NC_022364.1 3628452 3629231 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein HofM complement(3628452..3629231) Escherichia coli LY180 16981150 YP_008566535.1 CDS mrcA NC_022364.1 3629351 3631903 D bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; penicillin-binding protein 1a 3629351..3631903 Escherichia coli LY180 16981151 YP_008566536.1 CDS LY180_17410 NC_022364.1 3631928 3632056 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3631928..3632056) Escherichia coli LY180 16981152 YP_008566537.1 CDS nudE NC_022364.1 3632068 3632628 R ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenosine nucleotide hydrolase complement(3632068..3632628) Escherichia coli LY180 16981153 YP_008566538.1 CDS LY180_17420 NC_022364.1 3632948 3635083 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Intracellular growth attenuator protein igaA 3632948..3635083 Escherichia coli LY180 16981154 YP_008566539.1 CDS LY180_17425 NC_022364.1 3635148 3635816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nucleotidase 3635148..3635816 Escherichia coli LY180 16981155 YP_008566540.1 CDS LY180_17430 NC_022364.1 3635827 3636228 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribosome-associated heat shock protein Hsp15 3635827..3636228 Escherichia coli LY180 16981156 YP_008566541.1 CDS hslO NC_022364.1 3636247 3637131 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Derived by automated computational analysis using gene prediction method: Protein Homology.; Hsp33 chaperonin 3636247..3637131 Escherichia coli LY180 16981157 YP_008566542.1 CDS LY180_17440 NC_022364.1 3637194 3638918 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3637194..3638918) Escherichia coli LY180 16981158 YP_008566543.1 CDS LY180_17445 NC_022364.1 3639297 3640919 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxykinase 3639297..3640919 Escherichia coli LY180 16981159 YP_008566544.1 CDS LY180_17450 NC_022364.1 3641036 3641353 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxin RelE 3641036..3641353 Escherichia coli LY180 16981160 YP_008566545.1 CDS LY180_17455 NC_022364.1 3641412 3641708 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 3641412..3641708 Escherichia coli LY180 16981161 YP_008566546.1 CDS envZ NC_022364.1 3641740 3643092 R membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology.; osmolarity sensor protein complement(3641740..3643092) Escherichia coli LY180 16981162 YP_008566547.1 CDS ompR NC_022364.1 3643089 3643808 R part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3643089..3643808) Escherichia coli LY180 16981163 YP_008566548.1 CDS greB NC_022364.1 3644036 3644512 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription elongation factor GreB 3644036..3644512 Escherichia coli LY180 16981164 YP_008566549.1 CDS LY180_17475 NC_022364.1 3644609 3646930 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription accessory protein 3644609..3646930 Escherichia coli LY180 16981165 YP_008566550.1 CDS feoA NC_022364.1 3647368 3647595 D Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3647368..3647595 Escherichia coli LY180 16981166 YP_008566551.1 CDS feoB NC_022364.1 3647612 3649933 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3647612..3649933 Escherichia coli LY180 16981167 YP_008566552.1 CDS LY180_17490 NC_022364.1 3649933 3650169 D regulatory protein that controls transcription of feoABC genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 3649933..3650169 Escherichia coli LY180 16981168 YP_008566553.1 CDS LY180_17500 NC_022364.1 3651279 3652049 R Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxylesterase BioH complement(3651279..3652049) Escherichia coli LY180 16981170 YP_008566554.1 CDS LY180_17505 NC_022364.1 3652087 3652770 D required for utilization of DNA as the sole source of carbon and energy; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA utilization protein GntX 3652087..3652770 Escherichia coli LY180 16981171 YP_008566555.1 CDS LY180_17510 NC_022364.1 3652829 3653404 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fe/S biogenesis protein NfuA 3652829..3653404 Escherichia coli LY180 16981172 YP_008566556.1 CDS LY180_17515 NC_022364.1 3653765 3655081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT 3653765..3655081 Escherichia coli LY180 16981173 YP_008566557.1 CDS malQ NC_022364.1 3655126 3657210 R amylomaltase; acts to release glucose from maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-glucanotransferase complement(3655126..3657210) Escherichia coli LY180 16981174 YP_008566558.1 CDS LY180_17530 NC_022364.1 3660225 3662930 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3660225..3662930 Escherichia coli LY180 16981176 YP_008566559.1 CDS LY180_17535 NC_022364.1 3662973 3663992 R catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA 3'-terminal-phosphate cyclase complement(3662973..3663992) Escherichia coli LY180 16981177 YP_008566560.1 CDS LY180_17540 NC_022364.1 3663993 3665219 R Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-splicing ligase complement(3663993..3665219) Escherichia coli LY180 16981178 YP_008566561.1 CDS LY180_17545 NC_022364.1 3665408 3667006 D sigma 54-dependent; regulates genes involved in forming a 2',3'-cyclic phosphodiester on RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; Fis family transcriptional regulator 3665408..3667006 Escherichia coli LY180 16981179 YP_008566562.1 CDS LY180_17550 NC_022364.1 3666988 3667746 R represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3666988..3667746) Escherichia coli LY180 16981180 YP_008566563.1 CDS LY180_17555 NC_022364.1 3667763 3668593 R protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; Derived by automated computational analysis using gene prediction method: Protein Homology.; intramembrane serine protease GlpG complement(3667763..3668593) Escherichia coli LY180 16981181 YP_008566564.1 CDS glpE NC_022364.1 3668638 3668964 R belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiosulfate sulfurtransferase complement(3668638..3668964) Escherichia coli LY180 16981182 YP_008566565.1 CDS glpD NC_022364.1 3669154 3670659 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate dehydrogenase 3669154..3670659 Escherichia coli LY180 16981183 YP_008566566.1 CDS LY180_17570 NC_022364.1 3670962 3672170 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3670962..3672170 Escherichia coli LY180 16981184 YP_008566567.1 CDS LY180_17575 NC_022364.1 3672180 3672656 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3672180..3672656) Escherichia coli LY180 16981185 YP_008566568.1 CDS LY180_17580 NC_022364.1 3672659 3673426 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3672659..3673426) Escherichia coli LY180 16981186 YP_008566569.1 CDS LY180_17585 NC_022364.1 3673429 3674139 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3673429..3674139) Escherichia coli LY180 16981187 YP_008566570.1 CDS LY180_17590 NC_022364.1 3674154 3675659 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ABC transporter ATP-binding protein complement(3674154..3675659) Escherichia coli LY180 16981188 YP_008566571.1 CDS LY180_17595 NC_022364.1 3675787 3678234 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen phosphorylase complement(3675787..3678234) Escherichia coli LY180 16981189 YP_008566572.1 CDS glgA NC_022364.1 3678253 3679686 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen synthase complement(3678253..3679686) Escherichia coli LY180 16981190 YP_008566573.1 CDS glgC NC_022364.1 3679686 3680981 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate adenylyltransferase complement(3679686..3680981) Escherichia coli LY180 16981191 YP_008566574.1 CDS LY180_17610 NC_022364.1 3680999 3682972 R catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-debranching protein complement(3680999..3682972) Escherichia coli LY180 16981192 YP_008566575.1 CDS LY180_17615 NC_022364.1 3682969 3685155 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycogen-branching protein complement(3682969..3685155) Escherichia coli LY180 16981193 YP_008566576.1 CDS LY180_17620 NC_022364.1 3685428 3686531 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate-semialdehyde dehydrogenase complement(3685428..3686531) Escherichia coli LY180 16981194 YP_008566577.1 CDS LY180_17625 NC_022364.1 3686723 3687316 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3686723..3687316 Escherichia coli LY180 16981195 YP_008566578.1 CDS LY180_17630 NC_022364.1 3687373 3688713 R Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate transporter complement(3687373..3688713) Escherichia coli LY180 16981196 YP_008566579.1 CDS gntK NC_022364.1 3688717 3689244 R thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate kinase 1 complement(3688717..3689244) Escherichia coli LY180 16981197 YP_008566580.1 CDS LY180_17640 NC_022364.1 3689383 3690378 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3689383..3690378) Escherichia coli LY180 16981198 YP_008566581.1 CDS LY180_17645 NC_022364.1 3690602 3691297 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quercetin 2,3-dioxygenase complement(3690602..3691297) Escherichia coli LY180 16981199 YP_008566582.1 CDS LY180_17650 NC_022364.1 3691420 3692457 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(3691420..3692457) Escherichia coli LY180 16981200 YP_008566583.1 CDS LY180_17655 NC_022364.1 3692789 3693277 D YhhY; regulated by the fur regulator; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 3692789..3693277 Escherichia coli LY180 16981201 YP_008566584.1 CDS LY180_17660 NC_022364.1 3693514 3694692 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3693514..3694692 Escherichia coli LY180 16981202 YP_008566585.1 CDS LY180_17665 NC_022364.1 3694689 3695183 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3694689..3695183 Escherichia coli LY180 16981203 YP_008566586.1 CDS LY180_17670 NC_022364.1 3695633 3695917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3695633..3695917 Escherichia coli LY180 16981204 YP_008566587.1 CDS ggt NC_022364.1 3695955 3697697 R periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamyltranspeptidase complement(3695955..3697697) Escherichia coli LY180 16981205 YP_008566588.1 CDS LY180_17680 NC_022364.1 3697817 3698257 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3697817..3698257 Escherichia coli LY180 16981206 YP_008566589.1 CDS ugpQ NC_022364.1 3698244 3698987 R hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytoplasmic glycerophosphodiester phosphodiesterase complement(3698244..3698987) Escherichia coli LY180 16981207 YP_008566590.1 CDS ugpC NC_022364.1 3698984 3700054 R part of the UgpABCE glycerol-3-phosphate uptake system; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter ATP-binding protein complement(3698984..3700054) Escherichia coli LY180 16981208 YP_008566591.1 CDS LY180_17695 NC_022364.1 3700056 3700901 R with UgpABC is involved in uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter membrane protein complement(3700056..3700901) Escherichia coli LY180 16981209 YP_008566592.1 CDS LY180_17700 NC_022364.1 3700898 3701785 R with UgpEC is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate transporter permease complement(3700898..3701785) Escherichia coli LY180 16981210 YP_008566593.1 CDS LY180_17705 NC_022364.1 3701883 3703199 R with UgpACE is involved in the uptake of glycerol-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate ABC transporter substrate-binding protein complement(3701883..3703199) Escherichia coli LY180 16981211 YP_008566594.1 CDS livF NC_022364.1 3703596 3704297 R with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3703596..3704297) Escherichia coli LY180 16981212 YP_008566595.1 CDS livG NC_022364.1 3704311 3705078 R Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; amino acid ABC transporter ATP-binding protein complement(3704311..3705078) Escherichia coli LY180 16981213 YP_008566596.1 CDS livM NC_022364.1 3705075 3706352 R Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; Derived by automated computational analysis using gene prediction method: Protein Homology.; leucine/isoleucine/valine transporter permease subunit complement(3705075..3706352) Escherichia coli LY180 16981214 YP_008566597.1 CDS LY180_17725 NC_022364.1 3706349 3707275 R LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid transporter permease subunit LivH complement(3706349..3707275) Escherichia coli LY180 16981215 YP_008566598.1 CDS LY180_17730 NC_022364.1 3707323 3708432 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3707323..3708432) Escherichia coli LY180 16981216 YP_008566599.1 CDS LY180_17735 NC_022364.1 3708856 3709239 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3708856..3709239 Escherichia coli LY180 16981217 YP_008566600.1 CDS LY180_17740 NC_022364.1 3709236 3709763 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(3709236..3709763) Escherichia coli LY180 16981218 YP_008566601.1 CDS LY180_17745 NC_022364.1 3709770 3710036 R Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin-antitoxin system protein complement(3709770..3710036) Escherichia coli LY180 16981219 YP_008566602.1 CDS LY180_17750 NC_022364.1 3710186 3711289 R with LivFGHM is involved in the high affinity leucine transport; Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter substrate-binding protein complement(3710186..3711289) Escherichia coli LY180 16981220 YP_008566603.1 CDS LY180_17755 NC_022364.1 3711560 3712414 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA polymerase factor sigma-32 complement(3711560..3712414) Escherichia coli LY180 16981221 YP_008566604.1 CDS ftsX NC_022364.1 3712659 3713717 R ABC transporter, membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsX complement(3712659..3713717) Escherichia coli LY180 16981222 YP_008566605.1 CDS tauB NC_022364.1 3713710 3714378 R Part of the ABC transporter complex tauABC involved in taurine import; Derived by automated computational analysis using gene prediction method: Protein Homology.; taurine ABC transporter ATP-binding protein complement(3713710..3714378) Escherichia coli LY180 16981223 YP_008566606.1 CDS LY180_17770 NC_022364.1 3714381 3715874 R cell division protein; signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsY complement(3714381..3715874) Escherichia coli LY180 16981224 YP_008566607.1 CDS rsmD NC_022364.1 3716024 3716620 D catalyzes the methylation of 16S rRNA at position G966; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase 3716024..3716620 Escherichia coli LY180 16981225 YP_008566608.1 CDS LY180_17780 NC_022364.1 3716610 3716879 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3716610..3716879 Escherichia coli LY180 16981226 YP_008566609.1 CDS LY180_17785 NC_022364.1 3716882 3717241 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3716882..3717241) Escherichia coli LY180 16981227 YP_008566610.1 CDS LY180_17790 NC_022364.1 3717382 3718008 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3717382..3718008 Escherichia coli LY180 16981228 YP_008566611.1 CDS zntA NC_022364.1 3718082 3720280 D P-type ATPase involved in the export of lead, cadmium, zinc and mercury; Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc/cadmium/mercury/lead-transporting ATPase 3718082..3720280 Escherichia coli LY180 16981229 YP_008566612.1 CDS LY180_17800 NC_022364.1 3720382 3720627 R TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfurtransferase complement(3720382..3720627) Escherichia coli LY180 16981230 YP_008566613.1 CDS LY180_17805 NC_022364.1 3720848 3721513 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3720848..3721513 Escherichia coli LY180 16981231 YP_008566614.1 CDS LY180_17810 NC_022364.1 3721586 3722143 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3721586..3722143 Escherichia coli LY180 16981232 YP_008566615.1 CDS LY180_17815 NC_022364.1 3722147 3723364 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(3722147..3723364) Escherichia coli LY180 16981233 YP_008566616.1 CDS tqsA NC_022364.1 3723496 3724545 D transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; Derived by automated computational analysis using gene prediction method: Protein Homology.; pheromone autoinducer 2 transporter 3723496..3724545 Escherichia coli LY180 16981234 YP_008566617.1 CDS LY180_17825 NC_022364.1 3724600 3725187 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ACP synthase 3724600..3725187 Escherichia coli LY180 16981235 YP_008566618.1 CDS LY180_17830 NC_022364.1 3725298 3726872 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter substrate-binding protein 3725298..3726872 Escherichia coli LY180 16981236 YP_008566619.1 CDS LY180_17835 NC_022364.1 3726872 3727816 D with NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter permease 3726872..3727816 Escherichia coli LY180 16981237 YP_008566620.1 CDS nikC NC_022364.1 3727813 3728646 D with NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel ABC transporter permease 3727813..3728646 Escherichia coli LY180 16981238 YP_008566621.1 CDS LY180_17850 NC_022364.1 3730219 3730620 D Inhibits transcription at high concentrations of nickel; Derived by automated computational analysis using gene prediction method: Protein Homology.; nickel responsive regulator 3730219..3730620 Escherichia coli LY180 16981240 YP_008566622.1 CDS LY180_17855 NC_022364.1 3730740 3731099 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein HhH-GPD complement(3730740..3731099) Escherichia coli LY180 16981241 YP_008566623.1 CDS LY180_17860 NC_022364.1 3731430 3732554 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3731430..3732554) Escherichia coli LY180 16981242 YP_008566624.1 CDS LY180_17865 NC_022364.1 3732554 3735289 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; multidrug ABC transporter ATP-binding protein complement(3732554..3735289) Escherichia coli LY180 16981243 YP_008566625.1 CDS LY180_17870 NC_022364.1 3735286 3736353 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3735286..3736353) Escherichia coli LY180 16981244 YP_008566626.1 CDS LY180_17875 NC_022364.1 3738603 3740192 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3738603..3740192) Escherichia coli LY180 16982290 YP_008566627.1 CDS LY180_17880 NC_022364.1 3740576 3741628 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3740576..3741628 Escherichia coli LY180 16981246 YP_008566628.1 CDS LY180_17885 NC_022364.1 3741708 3741809 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3741708..3741809) Escherichia coli LY180 16981247 YP_008566629.1 CDS LY180_17890 NC_022364.1 3741944 3743146 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3741944..3743146) Escherichia coli LY180 16981248 YP_008566630.1 CDS LY180_17895 NC_022364.1 3743378 3744877 D involved in the transport of inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter PitA 3743378..3744877 Escherichia coli LY180 16981249 YP_008566631.1 CDS LY180_17900 NC_022364.1 3744948 3745283 R ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein B complement(3744948..3745283) Escherichia coli LY180 16981250 YP_008566632.1 CDS LY180_17905 NC_022364.1 3745674 3746108 D involved in resistance to DNA-damaging agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein A 3745674..3746108 Escherichia coli LY180 16981251 YP_008566633.1 CDS LY180_17910 NC_022364.1 3746426 3747895 D Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter 3746426..3747895 Escherichia coli LY180 16981252 YP_008566634.1 CDS LY180_17915 NC_022364.1 3747944 3748696 R predicted SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyltransferase complement(3747944..3748696) Escherichia coli LY180 16981253 YP_008566635.1 CDS LY180_17920 NC_022364.1 3748704 3750746 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oligopeptidase A complement(3748704..3750746) Escherichia coli LY180 16981254 YP_008566636.1 CDS LY180_17925 NC_022364.1 3750949 3751791 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3750949..3751791 Escherichia coli LY180 16981255 YP_008566637.1 CDS LY180_17930 NC_022364.1 3751863 3753215 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione reductase 3751863..3753215 Escherichia coli LY180 16981256 YP_008566638.1 CDS LY180_17935 NC_022364.1 3753269 3753352 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3753269..3753352) Escherichia coli LY180 16981257 YP_008566639.1 CDS LY180_17940 NC_022364.1 3754092 3754445 D regulates the expression of of the arsRBC involved in resistance to arsenic; Derived by automated computational analysis using gene prediction method: Protein Homology.; ArsR family transcriptional regulator 3754092..3754445 Escherichia coli LY180 16981258 YP_008566640.1 CDS LY180_17945 NC_022364.1 3754499 3755788 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 3754499..3755788 Escherichia coli LY180 16981259 YP_008566641.1 CDS LY180_17950 NC_022364.1 3755801 3756241 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arsenate reductase 3755801..3756241 Escherichia coli LY180 16981260 YP_008566642.1 CDS LY180_17955 NC_022364.1 3756369 3756665 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ArsR family transcriptional regulator complement(3756369..3756665) Escherichia coli LY180 16981261 YP_008566643.1 CDS LY180_17960 NC_022364.1 3756773 3757774 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3756773..3757774 Escherichia coli LY180 16981262 YP_008566644.1 CDS LY180_17970 NC_022364.1 3759824 3760390 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3759824..3760390 Escherichia coli LY180 16981264 YP_008566645.1 CDS LY180_17975 NC_022364.1 3760546 3761076 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 3760546..3761076 Escherichia coli LY180 16981265 YP_008566646.1 CDS LY180_17980 NC_022364.1 3761118 3761777 R inner membrane protein involved in cell density-dependent acid resistance; part of the acid fitness island (AFI) of E. coli; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium transporter ATPase complement(3761118..3761777) Escherichia coli LY180 16981266 YP_008566647.1 CDS hdeB NC_022364.1 3761829 3762167 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeB complement(3761829..3762167) Escherichia coli LY180 16981267 YP_008566648.1 CDS LY180_17990 NC_022364.1 3762271 3762603 R inactive form; Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeA complement(3762271..3762603) Escherichia coli LY180 16981268 YP_008566649.1 CDS LY180_17995 NC_022364.1 3762858 3763430 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acid-resistance protein HdeD 3762858..3763430 Escherichia coli LY180 16981269 YP_008566650.1 CDS LY180_18000 NC_022364.1 3764229 3764756 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 3764229..3764756 Escherichia coli LY180 16981270 YP_008566651.1 CDS LY180_18005 NC_022364.1 3764757 3765035 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3764757..3765035) Escherichia coli LY180 16981271 YP_008566652.1 CDS LY180_18010 NC_022364.1 3765095 3766252 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3765095..3766252 Escherichia coli LY180 16981272 YP_008566653.1 CDS LY180_18015 NC_022364.1 3766277 3769390 D Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 3766277..3769390 Escherichia coli LY180 16981273 YP_008566654.1 CDS LY180_18020 NC_022364.1 3769753 3770481 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3769753..3770481) Escherichia coli LY180 16981274 YP_008566655.1 CDS LY180_18025 NC_022364.1 3770849 3771673 R regulates genes in response to acid and/or during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3770849..3771673) Escherichia coli LY180 16981275 YP_008566656.1 CDS LY180_18030 NC_022364.1 3772043 3773443 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamate decarboxylase complement(3772043..3773443) Escherichia coli LY180 16981276 YP_008566657.1 CDS LY180_18035 NC_022364.1 3773654 3775051 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C peroxidase complement(3773654..3775051) Escherichia coli LY180 16981277 YP_008566658.1 CDS treF NC_022364.1 3775456 3777105 D cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalase 3775456..3777105 Escherichia coli LY180 16981278 YP_008566659.1 CDS LY180_18045 NC_022364.1 3777156 3777758 R Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator complement(3777156..3777758) Escherichia coli LY180 16981279 YP_008566660.1 CDS LY180_18050 NC_022364.1 3778206 3779177 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcripitonal regulator 3778206..3779177 Escherichia coli LY180 16981280 YP_008566661.1 CDS LY180_18055 NC_022364.1 3779226 3780239 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3779226..3780239 Escherichia coli LY180 16981281 YP_008566662.1 CDS LY180_18060 NC_022364.1 3780650 3781972 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3780650..3781972 Escherichia coli LY180 16981282 YP_008566663.1 CDS LY180_18065 NC_022364.1 3782206 3784266 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3782206..3784266) Escherichia coli LY180 16981283 YP_008566664.1 CDS LY180_18070 NC_022364.1 3784336 3785103 R in Escherichia coli this protein is involved in flagellar function; Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP phosphodiesterase complement(3784336..3785103) Escherichia coli LY180 16981284 YP_008566665.1 CDS LY180_18075 NC_022364.1 3785251 3786264 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketodeoxygluconokinase 3785251..3786264 Escherichia coli LY180 16981285 YP_008566666.1 CDS LY180_18080 NC_022364.1 3786360 3787856 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3786360..3787856) Escherichia coli LY180 16981286 YP_008566667.1 CDS LY180_18085 NC_022364.1 3788077 3789363 R involved in the transport of C4-dicarboxylates across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(3788077..3789363) Escherichia coli LY180 16981287 YP_008566668.1 CDS LY180_18090 NC_022364.1 3789546 3791534 R HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm formation regulator HmsP complement(3789546..3791534) Escherichia coli LY180 16981288 YP_008566669.1 CDS LY180_18095 NC_022364.1 3791616 3795089 R cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase subunit BcsC complement(3791616..3795089) Escherichia coli LY180 16981289 YP_008566670.1 CDS LY180_18100 NC_022364.1 3795071 3796177 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease III complement(3795071..3796177) Escherichia coli LY180 16981290 YP_008566671.1 CDS LY180_18105 NC_022364.1 3796184 3798460 R binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Derived by automated computational analysis using gene prediction method: Protein Homology.; cyclic di-GMP regulator CdgR complement(3796184..3798460) Escherichia coli LY180 16981291 YP_008566672.1 CDS bcsA NC_022364.1 3798534 3801152 R polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose synthase catalytic subunit complement(3798534..3801152) Escherichia coli LY180 16981292 YP_008566673.1 CDS LY180_18115 NC_022364.1 3801149 3801901 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein complement(3801149..3801901) Escherichia coli LY180 16981293 YP_008566674.1 CDS LY180_18120 NC_022364.1 3801913 3802101 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3801913..3802101) Escherichia coli LY180 16981294 YP_008566675.1 CDS LY180_18125 NC_022364.1 3802374 3803945 D required for cellulose biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; cellulose biosynthesis protein BcsE 3802374..3803945 Escherichia coli LY180 16981295 YP_008566676.1 CDS LY180_18130 NC_022364.1 3803942 3804133 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3803942..3804133 Escherichia coli LY180 16981296 YP_008566677.1 CDS LY180_18135 NC_022364.1 3804130 3805809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3804130..3805809 Escherichia coli LY180 16981297 YP_008566678.1 CDS LY180_18140 NC_022364.1 3805896 3806003 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3805896..3806003) Escherichia coli LY180 16981298 YP_008566679.1 CDS LY180_18145 NC_022364.1 3806379 3806486 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3806379..3806486) Escherichia coli LY180 16981299 YP_008566680.1 CDS LY180_18150 NC_022364.1 3806862 3806969 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3806862..3806969) Escherichia coli LY180 16981300 YP_008566681.1 CDS LY180_18155 NC_022364.1 3807445 3808716 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter 3807445..3808716 Escherichia coli LY180 16981301 YP_008566682.1 CDS LY180_18165 NC_022364.1 3810741 3811643 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter complement(3810741..3811643) Escherichia coli LY180 16981303 YP_008566683.1 CDS LY180_18170 NC_022364.1 3811653 3812672 R transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter permease complement(3811653..3812672) Escherichia coli LY180 16981304 YP_008566684.1 CDS LY180_18180 NC_022364.1 3812980 3814587 R DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide ABC transporter substrate-binding protein complement(3812980..3814587) Escherichia coli LY180 16981306 YP_008566685.1 CDS LY180_18190 NC_022364.1 3815668 3817359 R catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoethanolamine transferase complement(3815668..3817359) Escherichia coli LY180 16981308 YP_008566686.1 CDS LY180_18195 NC_022364.1 3817612 3818136 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; long polar fimbrial protein LpfE complement(3817612..3818136) Escherichia coli LY180 16981309 YP_008566687.1 CDS LY180_18200 NC_022364.1 3818142 3819197 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; long polar fimbrial protein LpfD complement(3818142..3819197) Escherichia coli LY180 16981310 YP_008566688.1 CDS LY180_18205 NC_022364.1 3819208 3821739 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD complement(3819208..3821739) Escherichia coli LY180 16981311 YP_008566689.1 CDS LY180_18210 NC_022364.1 3821763 3822449 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein StfD complement(3821763..3822449) Escherichia coli LY180 16981312 YP_008566690.1 CDS LY180_18215 NC_022364.1 3822533 3823057 R Derived by automated computational analysis using gene prediction method: Protein Homology.; long polar fimbrial protein LpfA complement(3822533..3823057) Escherichia coli LY180 16981313 YP_008566691.1 CDS LY180_18220 NC_022364.1 3823381 3824583 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3823381..3824583) Escherichia coli LY180 16981314 YP_008566692.1 CDS LY180_18225 NC_022364.1 3824812 3825510 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3824812..3825510) Escherichia coli LY180 16981315 YP_008566693.1 CDS LY180_18230 NC_022364.1 3825668 3826231 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-3-methyladenine glycosylase 3825668..3826231 Escherichia coli LY180 16981316 YP_008566694.1 CDS LY180_18235 NC_022364.1 3826228 3826668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase 3826228..3826668 Escherichia coli LY180 16981317 YP_008566695.1 CDS bisC NC_022364.1 3826637 3828970 R catalyzes the formation of biotin from biotin sulfoxide; Derived by automated computational analysis using gene prediction method: Protein Homology.; biotin sulfoxide reductase complement(3826637..3828970) Escherichia coli LY180 16981318 YP_008566696.1 CDS LY180_18245 NC_022364.1 3829123 3829782 D Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein 3829123..3829782 Escherichia coli LY180 16981319 YP_008566697.1 CDS LY180_18250 NC_022364.1 3829886 3830860 D catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional glyoxylate/hydroxypyruvate reductase B 3829886..3830860 Escherichia coli LY180 16981320 YP_008566698.1 CDS LY180_18255 NC_022364.1 3830910 3831620 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3830910..3831620) Escherichia coli LY180 16981321 YP_008566699.1 CDS LY180_18260 NC_022364.1 3832054 3832344 D Derived by automated computational analysis using gene prediction method: Protein Homology.; XRE family transcriptional regulator 3832054..3832344 Escherichia coli LY180 16981322 YP_008566700.1 CDS LY180_18265 NC_022364.1 3832625 3832837 D Derived by automated computational analysis using gene prediction method: Protein Homology.; cold-shock protein 3832625..3832837 Escherichia coli LY180 16981323 YP_008566701.1 CDS LY180_18270 NC_022364.1 3832941 3833177 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3832941..3833177) Escherichia coli LY180 16981324 YP_008566702.1 CDS LY180_18275 NC_022364.1 3833279 3834130 R Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(3833279..3834130) Escherichia coli LY180 16981325 YP_008566703.1 CDS LY180_18280 NC_022364.1 3834127 3834648 R Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-binding protein complement(3834127..3834648) Escherichia coli LY180 16981326 YP_008566704.1 CDS glyS NC_022364.1 3834949 3837018 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase complement(3834949..3837018) Escherichia coli LY180 16981327 YP_008566705.1 CDS LY180_18290 NC_022364.1 3837028 3837939 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycyl-tRNA synthetase complement(3837028..3837939) Escherichia coli LY180 16981328 YP_008566706.1 CDS LY180_18295 NC_022364.1 3838034 3838333 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3838034..3838333) Escherichia coli LY180 16981329 YP_008566707.1 CDS LY180_18300 NC_022364.1 3838508 3839221 D involved in enterobacterial common antigen biosynthesis; catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.; O-acetyltransferase 3838508..3839221 Escherichia coli LY180 16981330 YP_008566708.1 CDS LY180_18305 NC_022364.1 3839325 3840533 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3839325..3840533 Escherichia coli LY180 16981331 YP_008566709.1 CDS LY180_18310 NC_022364.1 3840572 3840841 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3840572..3840841 Escherichia coli LY180 16981332 YP_008566710.1 CDS LY180_18315 NC_022364.1 3840883 3841320 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3840883..3841320) Escherichia coli LY180 16981333 YP_008566711.1 CDS LY180_18320 NC_022364.1 3841366 3841707 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3841366..3841707) Escherichia coli LY180 16981334 YP_008566712.1 CDS LY180_18325 NC_022364.1 3841876 3843330 R catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylulokinase complement(3841876..3843330) Escherichia coli LY180 16981335 YP_008566713.1 CDS LY180_18330 NC_022364.1 3843402 3844724 R catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose isomerase complement(3843402..3844724) Escherichia coli LY180 16981336 YP_008566714.1 CDS xylF NC_022364.1 3845090 3846082 D periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter substrate-binding protein 3845090..3846082 Escherichia coli LY180 16981337 YP_008566715.1 CDS LY180_18340 NC_022364.1 3846160 3847701 D with XylFH is part of the high affinity xylose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter ATP-binding protein 3846160..3847701 Escherichia coli LY180 16981338 YP_008566716.1 CDS LY180_18345 NC_022364.1 3847679 3848860 D Derived by automated computational analysis using gene prediction method: Protein Homology.; xylose ABC transporter permease 3847679..3848860 Escherichia coli LY180 16981339 YP_008566717.1 CDS LY180_18350 NC_022364.1 3848938 3850116 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3848938..3850116 Escherichia coli LY180 16981340 YP_008566718.1 CDS LY180_18355 NC_022364.1 3850224 3851048 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3850224..3851048) Escherichia coli LY180 16981341 YP_008566719.1 CDS malS NC_022364.1 3851368 3853398 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-amylase 3851368..3853398 Escherichia coli LY180 16981342 YP_008566720.1 CDS avtA NC_022364.1 3853576 3854829 D transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; valine--pyruvate aminotransferase 3853576..3854829 Escherichia coli LY180 16981343 YP_008566721.1 CDS LY180_18375 NC_022364.1 3854980 3855453 R Derived by automated computational analysis using gene prediction method: Protein Homology.; electron transporter complement(3854980..3855453) Escherichia coli LY180 16981344 YP_008566722.1 CDS LY180_18380 NC_022364.1 3855555 3856403 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3855555..3856403) Escherichia coli LY180 16981345 YP_008566723.1 CDS LY180_18385 NC_022364.1 3856604 3857602 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate reductase 3856604..3857602 Escherichia coli LY180 16981346 YP_008566724.1 CDS LY180_18390 NC_022364.1 3857614 3858081 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3857614..3858081 Escherichia coli LY180 16981347 YP_008566725.1 CDS LY180_18395 NC_022364.1 3858199 3858672 D membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2,3-diketo-L-gulonate TRAP transporter permease 3858199..3858672 Escherichia coli LY180 16981348 YP_008566726.1 CDS LY180_18400 NC_022364.1 3858675 3859952 D TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.; dehydroascorbate transporter 3858675..3859952 Escherichia coli LY180 16981349 YP_008566727.1 CDS LY180_18405 NC_022364.1 3859965 3860951 D involved in the transport of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter substrate-binding protein 3859965..3860951 Escherichia coli LY180 16981350 YP_008566728.1 CDS LY180_18410 NC_022364.1 3860955 3862451 D catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate, respectively; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose/3-keto-L-gulonate kinase 3860955..3862451 Escherichia coli LY180 16981351 YP_008566729.1 CDS ulaD NC_022364.1 3862448 3863110 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 3862448..3863110 Escherichia coli LY180 16981352 YP_008566730.1 CDS LY180_18420 NC_022364.1 3863103 3863963 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose 5-phosphate 3-epimerase 3863103..3863963 Escherichia coli LY180 16981353 YP_008566731.1 CDS araD NC_022364.1 3863957 3864652 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 3863957..3864652 Escherichia coli LY180 16981354 YP_008566732.1 CDS LY180_18430 NC_022364.1 3864819 3864959 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3864819..3864959) Escherichia coli LY180 16981355 YP_008566733.1 CDS LY180_18435 NC_022364.1 3864999 3865739 R scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA; Derived by automated computational analysis using gene prediction method: Protein Homology.; MltA-interacting protein MipA complement(3864999..3865739) Escherichia coli LY180 16981356 YP_008566734.1 CDS LY180_18440 NC_022364.1 3865863 3866837 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LysR family transcriptional regulator 3865863..3866837 Escherichia coli LY180 16981357 YP_008566735.1 CDS LY180_18445 NC_022364.1 3866834 3867970 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3866834..3867970) Escherichia coli LY180 16981358 YP_008566736.1 CDS LY180_18450 NC_022364.1 3867976 3868299 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3867976..3868299) Escherichia coli LY180 16981359 YP_008566737.1 CDS LY180_18455 NC_022364.1 3868482 3868625 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 3868482..3868625 Escherichia coli LY180 16981360 YP_008566738.1 CDS LY180_18460 NC_022364.1 3868844 3870382 R catalyzes the oxidation of acetaldehyde, benzaldehyde, propionaldehyde and other aldehydes; Derived by automated computational analysis using gene prediction method: Protein Homology.; aldehyde dehydrogenase complement(3868844..3870382) Escherichia coli LY180 16981361 YP_008566739.1 CDS LY180_18465 NC_022364.1 3870547 3871698 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(3870547..3871698) Escherichia coli LY180 16981362 YP_008566740.1 CDS LY180_18470 NC_022364.1 3871888 3873732 R Derived by automated computational analysis using gene prediction method: Protein Homology.; translation elongation factor complement(3871888..3873732) Escherichia coli LY180 16981363 YP_008566741.1 CDS LY180_18475 NC_022364.1 3873729 3875120 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; selenocysteine synthase complement(3873729..3875120) Escherichia coli LY180 16981364 YP_008566742.1 CDS LY180_18480 NC_022364.1 3875218 3875826 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutathione S-transferase complement(3875218..3875826) Escherichia coli LY180 16981365 YP_008566743.1 CDS LY180_18485 NC_022364.1 3876055 3880278 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3876055..3880278 Escherichia coli LY180 16981366 YP_008566744.1 CDS LY180_18490 NC_022364.1 3880250 3880633 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3880250..3880633 Escherichia coli LY180 16981367 YP_008566745.1 CDS LY180_18495 NC_022364.1 3880738 3881580 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lyase 3880738..3881580 Escherichia coli LY180 16981368 YP_008566746.1 CDS LY180_18500 NC_022364.1 3881628 3882566 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; type IV secretion protein Rhs 3881628..3882566 Escherichia coli LY180 16981369 YP_008566747.1 CDS LY180_18505 NC_022364.1 3882578 3883039 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3882578..3883039 Escherichia coli LY180 16981370 YP_008566748.1 CDS LY180_18510 NC_022364.1 3883746 3884183 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3883746..3884183 Escherichia coli LY180 16981371 YP_008566749.1 CDS LY180_18515 NC_022364.1 3884643 3885779 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3884643..3885779) Escherichia coli LY180 16981372 YP_008566750.1 CDS LY180_18520 NC_022364.1 3885782 3886144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3885782..3886144) Escherichia coli LY180 16981373 YP_008566751.1 CDS LY180_18525 NC_022364.1 3886681 3888594 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; subunit IIC forms the translocation channel and contains the specific substrate-binding site; subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit; subunit IIB transfers the phosphoryl group to the substrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS mannitol transporter subunit IIABC 3886681..3888594 Escherichia coli LY180 16981374 YP_008566752.1 CDS LY180_18530 NC_022364.1 3888824 3889972 D Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol-1-phosphate 5-dehydrogenase 3888824..3889972 Escherichia coli LY180 16981375 YP_008566753.1 CDS mtlR NC_022364.1 3889972 3890559 D Acts as a repressor of the mtlAD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannitol repressor protein 3889972..3890559 Escherichia coli LY180 16981376 YP_008566754.1 CDS LY180_18540 NC_022364.1 3890571 3890780 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3890571..3890780) Escherichia coli LY180 16981377 YP_008566755.1 CDS LY180_18545 NC_022364.1 3891065 3891427 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3891065..3891427 Escherichia coli LY180 16981378 YP_008566756.1 CDS LY180_18550 NC_022364.1 3891971 3892654 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3891971..3892654 Escherichia coli LY180 16981379 YP_008566757.1 CDS LY180_18555 NC_022364.1 3892705 3893913 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3892705..3893913) Escherichia coli LY180 16981380 YP_008566758.1 CDS LY180_18560 NC_022364.1 3894036 3898886 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; adhesin 3894036..3898886 Escherichia coli LY180 16981381 YP_008566759.1 CDS LY180_18565 NC_022364.1 3899255 3900910 D Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate permease 3899255..3900910 Escherichia coli LY180 16981382 YP_008566760.1 CDS LY180_18570 NC_022364.1 3900910 3901686 D represses the lctPRD operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 3900910..3901686 Escherichia coli LY180 16981383 YP_008566761.1 CDS lldD NC_022364.1 3901683 3902873 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-lactate dehydrogenase 3901683..3902873 Escherichia coli LY180 16981384 YP_008566762.1 CDS LY180_18580 NC_022364.1 3903028 3903501 D member of the SPOUT superfamily of RNA methyltransferases; Derived by automated computational analysis using gene prediction method: Protein Homology.; rRNA methyltransferase 3903028..3903501 Escherichia coli LY180 16981385 YP_008566763.1 CDS cysE NC_022364.1 3903554 3904375 R catalyzes the O-acetylation of serine; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine acetyltransferase complement(3903554..3904375) Escherichia coli LY180 16981386 YP_008566764.1 CDS LY180_18590 NC_022364.1 3904455 3905474 R Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3904455..3905474) Escherichia coli LY180 16981387 YP_008566765.1 CDS LY180_18595 NC_022364.1 3905474 3905941 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecB complement(3905474..3905941) Escherichia coli LY180 16981388 YP_008566766.1 CDS LY180_18600 NC_022364.1 3906004 3906255 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glutaredoxin complement(3906004..3906255) Escherichia coli LY180 16981389 YP_008566767.1 CDS LY180_18605 NC_022364.1 3906397 3906828 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3906397..3906828) Escherichia coli LY180 16981390 YP_008566768.1 CDS LY180_18610 NC_022364.1 3907073 3908617 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglyceromutase 3907073..3908617 Escherichia coli LY180 16981391 YP_008566769.1 CDS LY180_18615 NC_022364.1 3908627 3909910 D Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase M37 3908627..3909910 Escherichia coli LY180 16981392 YP_008566770.1 CDS LY180_18620 NC_022364.1 3909914 3910873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3909914..3910873 Escherichia coli LY180 16981393 YP_008566771.1 CDS LY180_18625 NC_022364.1 3910860 3911327 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3910860..3911327) Escherichia coli LY180 16981394 YP_008566772.1 CDS LY180_18630 NC_022364.1 3911400 3912608 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3911400..3912608 Escherichia coli LY180 16981395 YP_008566773.1 CDS LY180_18635 NC_022364.1 3912618 3913232 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glycosyl transferase complement(3912618..3913232) Escherichia coli LY180 16981396 YP_008566774.1 CDS tdh NC_022364.1 3913471 3914496 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-threonine 3-dehydrogenase complement(3913471..3914496) Escherichia coli LY180 16981397 YP_008566775.1 CDS LY180_18645 NC_022364.1 3914506 3915702 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-amino-3-ketobutyrate CoA ligase complement(3914506..3915702) Escherichia coli LY180 16981398 YP_008566776.1 CDS rfaD NC_022364.1 3915916 3916848 D catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-L-glycero-D-mannoheptose-6-epimerase 3915916..3916848 Escherichia coli LY180 16981399 YP_008566777.1 CDS LY180_18655 NC_022364.1 3916858 3917904 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 3916858..3917904 Escherichia coli LY180 16981400 YP_008566778.1 CDS LY180_18660 NC_022364.1 3917908 3918879 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-heptose:LPS heptosyl transferase 3917908..3918879 Escherichia coli LY180 16981401 YP_008566779.1 CDS LY180_18665 NC_022364.1 3918949 3919911 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; polymerase complement(3918949..3919911) Escherichia coli LY180 16981402 YP_008566780.1 CDS LY180_18670 NC_022364.1 3920248 3921231 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; beta1,3-glucosyltransferase complement(3920248..3921231) Escherichia coli LY180 16981403 YP_008566781.1 CDS LY180_18675 NC_022364.1 3921313 3922341 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(3921313..3922341) Escherichia coli LY180 16981404 YP_008566782.1 CDS LY180_18680 NC_022364.1 3922367 3923059 R catalyzes the phosphorylation of heptose(II) of the outer membrane lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(II) kinase RfaY complement(3922367..3923059) Escherichia coli LY180 16981405 YP_008566783.1 CDS LY180_18685 NC_022364.1 3923069 3924064 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(3923069..3924064) Escherichia coli LY180 16981406 YP_008566784.1 CDS LY180_18690 NC_022364.1 3924081 3925097 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide 1,3-galactosyltransferase complement(3924081..3925097) Escherichia coli LY180 16981407 YP_008566785.1 CDS LY180_18695 NC_022364.1 3925113 3925910 R catalyzes the phosphorylation of heptose I in the lipopolysaccharide core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptose(I) kinase RfaP complement(3925113..3925910) Escherichia coli LY180 16981408 YP_008566786.1 CDS LY180_18700 NC_022364.1 3925903 3927027 R catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosyltransferase complement(3925903..3927027) Escherichia coli LY180 16981409 YP_008566787.1 CDS LY180_18705 NC_022364.1 3927024 3928082 R catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide core heptosyltransferase RfaQ complement(3927024..3928082) Escherichia coli LY180 16981410 YP_008566788.1 CDS LY180_18710 NC_022364.1 3928495 3929772 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-deoxy-D-manno-octulosonic acid transferase 3928495..3929772 Escherichia coli LY180 16981411 YP_008566789.1 CDS coaD NC_022364.1 3929780 3930259 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantetheine adenylyltransferase 3929780..3930259 Escherichia coli LY180 16981412 YP_008566790.1 CDS LY180_18720 NC_022364.1 3930298 3931107 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-hydroxymethyluracil DNA glycosylase complement(3930298..3931107) Escherichia coli LY180 16981413 YP_008566791.1 CDS rpmG NC_022364.1 3931205 3931372 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L33 complement(3931205..3931372) Escherichia coli LY180 16981414 YP_008566792.1 CDS rpmB NC_022364.1 3931393 3931629 R required for 70S ribosome assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L28 complement(3931393..3931629) Escherichia coli LY180 16981415 YP_008566793.1 CDS LY180_18735 NC_022364.1 3931846 3932514 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3931846..3932514) Escherichia coli LY180 16981416 YP_008566794.1 CDS LY180_18740 NC_022364.1 3932686 3933906 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopantothenoylcysteine decarboxylase 3932686..3933906 Escherichia coli LY180 16981417 YP_008566795.1 CDS LY180_18745 NC_022364.1 3933884 3934342 D catalyzes the formation of dUMP from dUTP; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyuridine 5'-triphosphate nucleotidohydrolase 3933884..3934342 Escherichia coli LY180 16981418 YP_008566796.1 CDS slmA NC_022364.1 3934449 3935045 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; division inhibitor protein 3934449..3935045 Escherichia coli LY180 16981419 YP_008566797.1 CDS pyrE NC_022364.1 3935082 3935723 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; orotate phosphoribosyltransferase complement(3935082..3935723) Escherichia coli LY180 16981420 YP_008566798.1 CDS rph NC_022364.1 3935789 3936505 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease PH complement(3935789..3936505) Escherichia coli LY180 16981421 YP_008566799.1 CDS LY180_18765 NC_022364.1 3936632 3937495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3936632..3937495 Escherichia coli LY180 16981422 YP_008566800.1 CDS dinD NC_022364.1 3937716 3938540 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA damage-inducible protein D 3937716..3938540 Escherichia coli LY180 16981423 YP_008566801.1 CDS LY180_18775 NC_022364.1 3938832 3939449 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3938832..3939449 Escherichia coli LY180 16981424 YP_008566802.1 CDS ligB NC_022364.1 3939446 3941128 R this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; Derived by automated computational analysis using gene prediction method: Protein Homology.; NAD-dependent DNA ligase LigB complement(3939446..3941128) Escherichia coli LY180 16981425 YP_008566803.1 CDS gmk NC_022364.1 3941386 3942009 D Essential for recycling GMP and indirectly, cGMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanylate kinase 3941386..3942009 Escherichia coli LY180 16981426 YP_008566804.1 CDS rpoZ NC_022364.1 3942064 3942339 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit omega 3942064..3942339 Escherichia coli LY180 16981427 YP_008566805.1 CDS LY180_18795 NC_022364.1 3942358 3944466 D Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3942358..3944466 Escherichia coli LY180 16981428 YP_008566806.1 CDS LY180_18800 NC_022364.1 3944473 3945162 D specifically modifies tRNA at position G18; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA methyltransferase 3944473..3945162 Escherichia coli LY180 16981429 YP_008566807.1 CDS LY180_18805 NC_022364.1 3945168 3947249 D catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecG 3945168..3947249 Escherichia coli LY180 16981430 YP_008566808.1 CDS LY180_18810 NC_022364.1 3947234 3948100 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3947234..3948100) Escherichia coli LY180 16981431 YP_008566809.1 CDS LY180_18815 NC_022364.1 3948103 3949308 R is involved with the sodium-dependent uptake of glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium/glutamate symport carrier protein GltS complement(3948103..3949308) Escherichia coli LY180 16981432 YP_008566810.1 CDS LY180_18820 NC_022364.1 3949588 3950979 D high-affinity transporter for xanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.; xanthine permease 3949588..3950979 Escherichia coli LY180 16981433 YP_008566811.1 CDS LY180_18825 NC_022364.1 3951100 3952809 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3951100..3952809 Escherichia coli LY180 16981434 YP_008566812.1 CDS LY180_18830 NC_022364.1 3952861 3955179 R catalyzes the transfer of alpha-xylosyl residue; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase complement(3952861..3955179) Escherichia coli LY180 16981435 YP_008566813.1 CDS LY180_18835 NC_022364.1 3955189 3956571 R may be involved in the transport of galactosides-pentoses-hexuronides; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(3955189..3956571) Escherichia coli LY180 16981436 YP_008566814.1 CDS LY180_18845 NC_022364.1 3957121 3958344 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 3957121..3958344 Escherichia coli LY180 16981438 YP_008566815.1 CDS LY180_18850 NC_022364.1 3958440 3960065 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA helicase UvrD complement(3958440..3960065) Escherichia coli LY180 16981439 YP_008566816.1 CDS LY180_18855 NC_022364.1 3960067 3961767 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; chromosome segregation protein SMC complement(3960067..3961767) Escherichia coli LY180 16981440 YP_008566817.1 CDS LY180_18860 NC_022364.1 3962175 3962558 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3962175..3962558) Escherichia coli LY180 16981441 YP_008566818.1 CDS LY180_18865 NC_022364.1 3963303 3963803 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3963303..3963803) Escherichia coli LY180 16981442 YP_008566819.1 CDS LY180_18870 NC_022364.1 3963910 3965118 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3963910..3965118 Escherichia coli LY180 16981443 YP_008566820.1 CDS LY180_18875 NC_022364.1 3965097 3965672 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3965097..3965672) Escherichia coli LY180 16981444 YP_008566821.1 CDS LY180_18880 NC_022364.1 3966008 3966211 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator complement(3966008..3966211) Escherichia coli LY180 16981445 YP_008566822.1 CDS LY180_18885 NC_022364.1 3966592 3967740 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3966592..3967740 Escherichia coli LY180 16981446 YP_008566823.1 CDS LY180_18890 NC_022364.1 3968143 3968436 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3968143..3968436 Escherichia coli LY180 16981447 YP_008566824.1 CDS LY180_18895 NC_022364.1 3968464 3969330 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase complement(3968464..3969330) Escherichia coli LY180 16981448 YP_008566825.1 CDS LY180_18900 NC_022364.1 3969327 3969626 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transposase IS3 complement(3969327..3969626) Escherichia coli LY180 16981449 YP_008566826.1 CDS LY180_18905 NC_022364.1 3969858 3970661 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3969858..3970661 Escherichia coli LY180 16981450 YP_008566827.1 CDS LY180_18910 NC_022364.1 3970878 3971354 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3970878..3971354 Escherichia coli LY180 16981451 YP_008566828.1 CDS LY180_18915 NC_022364.1 3971426 3972247 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3971426..3972247 Escherichia coli LY180 16981452 YP_008566829.1 CDS LY180_18920 NC_022364.1 3972317 3972787 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3972317..3972787 Escherichia coli LY180 16981453 YP_008566830.1 CDS LY180_18925 NC_022364.1 3972796 3973017 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3972796..3973017 Escherichia coli LY180 16981454 YP_008566831.1 CDS LY180_18930 NC_022364.1 3973049 3973414 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 3973049..3973414 Escherichia coli LY180 16981455 YP_008566832.1 CDS LY180_18935 NC_022364.1 3973448 3973768 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 3973448..3973768 Escherichia coli LY180 16981456 YP_008566833.1 CDS LY180_18940 NC_022364.1 3974535 3975719 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar transporter 3974535..3975719 Escherichia coli LY180 16981457 YP_008566834.1 CDS LY180_18945 NC_022364.1 3975830 3976753 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3975830..3976753 Escherichia coli LY180 16981458 YP_008566835.1 CDS LY180_18950 NC_022364.1 3976757 3977038 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transporter complement(3976757..3977038) Escherichia coli LY180 16981459 YP_008566836.1 CDS LY180_18955 NC_022364.1 3977035 3978243 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(3977035..3978243) Escherichia coli LY180 16981460 YP_008566837.1 CDS metQ NC_022364.1 3978347 3978913 R Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine ABC transporter substrate-binding protein complement(3978347..3978913) Escherichia coli LY180 16981461 YP_008566838.1 CDS LY180_18965 NC_022364.1 3979011 3979130 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3979011..3979130 Escherichia coli LY180 16981462 YP_008566839.1 CDS LY180_18970 NC_022364.1 3979135 3979428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 3979135..3979428 Escherichia coli LY180 16981463 YP_008566840.1 CDS nepI NC_022364.1 3979469 3980824 R experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside transporter complement(3979469..3980824) Escherichia coli LY180 16981464 YP_008566841.1 CDS LY180_18980 NC_022364.1 3980870 3981322 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3980870..3981322) Escherichia coli LY180 16981465 YP_008566842.1 CDS LY180_18985 NC_022364.1 3981375 3982721 R involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease complement(3981375..3982721) Escherichia coli LY180 16981466 YP_008566843.1 CDS LY180_18990 NC_022364.1 3982884 3984650 D catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine deaminase 3982884..3984650 Escherichia coli LY180 16981467 YP_008566844.1 CDS uhpT NC_022364.1 3984695 3986086 R cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; antiporter complement(3984695..3986086) Escherichia coli LY180 16981468 YP_008566845.1 CDS LY180_19000 NC_022364.1 3986224 3987543 R membrane protein regulates uhpT expression; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein complement(3986224..3987543) Escherichia coli LY180 16981469 YP_008566846.1 CDS LY180_19005 NC_022364.1 3987553 3989055 R Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(3987553..3989055) Escherichia coli LY180 16981470 YP_008566847.1 CDS LY180_19010 NC_022364.1 3989055 3989645 R response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(3989055..3989645) Escherichia coli LY180 16981471 YP_008566848.1 CDS LY180_19015 NC_022364.1 3989720 3990010 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(3989720..3990010) Escherichia coli LY180 16981472 YP_008566849.1 CDS LY180_19020 NC_022364.1 3990014 3991702 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase complement(3990014..3991702) Escherichia coli LY180 16981473 YP_008566850.1 CDS LY180_19025 NC_022364.1 3991893 3992183 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 3991893..3992183 Escherichia coli LY180 16981474 YP_008566851.1 CDS LY180_19030 NC_022364.1 3992471 3992560 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; toxic peptide TisB 3992471..3992560 Escherichia coli LY180 16981475 YP_008566852.1 CDS emrD NC_022364.1 3992979 3994163 D multidrug efflux protein involved in adaptation to low energy shock; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein D 3992979..3994163 Escherichia coli LY180 16981476 YP_008566853.1 CDS LY180_19040 NC_022364.1 3994171 3994668 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3994171..3994668) Escherichia coli LY180 16981477 YP_008566854.1 CDS LY180_19045 NC_022364.1 3994665 3995027 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3994665..3995027) Escherichia coli LY180 16981478 YP_008566855.1 CDS LY180_19050 NC_022364.1 3995017 3995364 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(3995017..3995364) Escherichia coli LY180 16981479 YP_008566856.1 CDS LY180_19055 NC_022364.1 3995474 3995923 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 3995474..3995923 Escherichia coli LY180 16981480 YP_008566857.1 CDS LY180_19060 NC_022364.1 3995970 3997463 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(3995970..3997463) Escherichia coli LY180 16981481 YP_008566858.1 CDS LY180_19065 NC_022364.1 3997460 3999175 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(3997460..3999175) Escherichia coli LY180 16981482 YP_008566859.1 CDS LY180_19070 NC_022364.1 3999342 4000235 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 3999342..4000235 Escherichia coli LY180 16981483 YP_008566860.1 CDS LY180_19075 NC_022364.1 4001046 4002662 R involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS alpha-glucoside transporter subunit IIBC complement(4001046..4002662) Escherichia coli LY180 16982294 YP_008566861.1 CDS LY180_19080 NC_022364.1 4002958 4003674 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 4002958..4003674 Escherichia coli LY180 16981485 YP_008566862.1 CDS LY180_19085 NC_022364.1 4003671 4005332 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4003671..4005332) Escherichia coli LY180 16981486 YP_008566863.1 CDS LY180_19090 NC_022364.1 4005375 4005524 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide ABC transporter ATP-binding protein 4005375..4005524 Escherichia coli LY180 16981487 YP_008566864.1 CDS LY180_19095 NC_022364.1 4005529 4005957 R 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock chaperone IbpB complement(4005529..4005957) Escherichia coli LY180 16981488 YP_008566865.1 CDS LY180_19100 NC_022364.1 4006069 4006482 R with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; heat shock protein IbpA complement(4006069..4006482) Escherichia coli LY180 16981489 YP_008566866.1 CDS LY180_19105 NC_022364.1 4006788 4007120 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4006788..4007120 Escherichia coli LY180 16981490 YP_008566867.1 CDS LY180_19110 NC_022364.1 4007122 4008369 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4007122..4008369) Escherichia coli LY180 16981491 YP_008566868.1 CDS LY180_19115 NC_022364.1 4008419 4009501 D FAD/NAD(P)-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase 4008419..4009501 Escherichia coli LY180 16981492 YP_008566869.1 CDS LY180_19120 NC_022364.1 4009498 4010790 R Derived by automated computational analysis using gene prediction method: Protein Homology.; glucarate transporter complement(4009498..4010790) Escherichia coli LY180 16981493 YP_008566870.1 CDS LY180_19125 NC_022364.1 4010910 4012058 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate dehydratase complement(4010910..4012058) Escherichia coli LY180 16981494 YP_008566871.1 CDS LY180_19130 NC_022364.1 4012055 4012672 R catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase complement(4012055..4012672) Escherichia coli LY180 16981495 YP_008566872.1 CDS LY180_19135 NC_022364.1 4012656 4013534 R catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-oxo-3-deoxygalactonate kinase complement(4012656..4013534) Escherichia coli LY180 16981496 YP_008566873.1 CDS LY180_19140 NC_022364.1 4013531 4014220 R Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate operon transcriptional repressor complement(4013531..4014220) Escherichia coli LY180 16981497 YP_008566874.1 CDS LY180_19145 NC_022364.1 4014498 4015154 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4014498..4015154 Escherichia coli LY180 16981498 YP_008566875.1 CDS LY180_19150 NC_022364.1 4015200 4016012 R YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar phosphate phosphatase complement(4015200..4016012) Escherichia coli LY180 16981499 YP_008566876.1 CDS LY180_19155 NC_022364.1 4016127 4016525 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4016127..4016525) Escherichia coli LY180 16981500 YP_008566877.1 CDS LY180_19160 NC_022364.1 4016659 4016745 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4016659..4016745) Escherichia coli LY180 16981501 YP_008566878.1 CDS gyrB NC_022364.1 4016765 4019179 R negatively supercoils closed circular double-stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA gyrase subunit B complement(4016765..4019179) Escherichia coli LY180 16981502 YP_008566879.1 CDS recF NC_022364.1 4019208 4020281 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; recombinase F complement(4019208..4020281) Escherichia coli LY180 16981503 YP_008566880.1 CDS LY180_19175 NC_022364.1 4020281 4021381 R binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit beta complement(4020281..4021381) Escherichia coli LY180 16981504 YP_008566881.1 CDS dnaA NC_022364.1 4021386 4022789 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; Derived by automated computational analysis using gene prediction method: Protein Homology.; chromosomal replication initiation protein complement(4021386..4022789) Escherichia coli LY180 16981505 YP_008566882.1 CDS rpmH NC_022364.1 4023396 4023536 D in Escherichia coli transcription of this gene is enhanced by polyamines; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L34 4023396..4023536 Escherichia coli LY180 16981506 YP_008566883.1 CDS rnpA NC_022364.1 4023553 4023912 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease P 4023553..4023912 Escherichia coli LY180 16981507 YP_008566884.1 CDS LY180_19195 NC_022364.1 4024136 4025782 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein insertase 4024136..4025782 Escherichia coli LY180 16981508 YP_008566885.1 CDS trmE NC_022364.1 4025888 4027252 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA modification GTPase TrmE 4025888..4027252 Escherichia coli LY180 16981509 YP_008566886.1 CDS tnaA NC_022364.1 4027790 4029205 D tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; also has xysteine desulfhydrase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-cysteine desulfhydrase 4027790..4029205 Escherichia coli LY180 16981510 YP_008566887.1 CDS LY180_19210 NC_022364.1 4029296 4030543 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tryptophan permease 4029296..4030543 Escherichia coli LY180 16981511 YP_008566888.1 CDS LY180_19215 NC_022364.1 4030675 4031850 D Confers resistance to chloramphenicol; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter 4030675..4031850 Escherichia coli LY180 16981512 YP_008566889.1 CDS LY180_19220 NC_022364.1 4031825 4032784 D Involved in anaerobic NO protection; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4031825..4032784 Escherichia coli LY180 16981513 YP_008566890.1 CDS LY180_19225 NC_022364.1 4032941 4033690 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4032941..4033690 Escherichia coli LY180 16981514 YP_008566891.1 CDS LY180_19230 NC_022364.1 4033712 4034278 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4033712..4034278 Escherichia coli LY180 16981515 YP_008566892.1 CDS LY180_19235 NC_022364.1 4034332 4035669 R involved in the transport or adenine; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenine permease complement(4034332..4035669) Escherichia coli LY180 16981516 YP_008566893.1 CDS LY180_19240 NC_022364.1 4035836 4036501 D YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconate phosphatase 4035836..4036501 Escherichia coli LY180 16981517 YP_008566894.1 CDS LY180_19245 NC_022364.1 4036568 4037041 D might be involved in hypersensitivity to nitrofurzone; Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4036568..4037041 Escherichia coli LY180 16981518 YP_008566895.1 CDS LY180_19250 NC_022364.1 4037090 4037677 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4037090..4037677 Escherichia coli LY180 16981519 YP_008566896.1 CDS LY180_19255 NC_022364.1 4037739 4038461 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphogluconolactonase complement(4037739..4038461) Escherichia coli LY180 16981520 YP_008566897.1 CDS LY180_19260 NC_022364.1 4038476 4039645 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4038476..4039645) Escherichia coli LY180 16981521 YP_008566898.1 CDS LY180_19265 NC_022364.1 4039672 4041288 R Derived by automated computational analysis using gene prediction method: Protein Homology.; porin complement(4039672..4041288) Escherichia coli LY180 16981522 YP_008566899.1 CDS LY180_19270 NC_022364.1 4041374 4042768 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phospho-beta-glucosidase complement(4041374..4042768) Escherichia coli LY180 16981523 YP_008566900.1 CDS LY180_19275 NC_022364.1 4042787 4044601 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS glucose transporter subunit IIA complement(4042787..4044601) Escherichia coli LY180 16981524 YP_008566901.1 CDS LY180_19280 NC_022364.1 4044798 4045634 R positive regulator of the beta-glucoside operon; transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein BlgG complement(4044798..4045634) Escherichia coli LY180 16981525 YP_008566902.1 CDS LY180_19285 NC_022364.1 4045920 4046645 R regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4045920..4046645) Escherichia coli LY180 16981526 YP_008566903.1 CDS LY180_19290 NC_022364.1 4046660 4047433 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphate ABC transporter ATP-binding protein complement(4046660..4047433) Escherichia coli LY180 16981527 YP_008566904.1 CDS pstA NC_022364.1 4047524 4048414 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PtsA complement(4047524..4048414) Escherichia coli LY180 16981528 YP_008566905.1 CDS pstC NC_022364.1 4048414 4049373 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate transporter permease subunit PstC complement(4048414..4049373) Escherichia coli LY180 16981529 YP_008566906.1 CDS LY180_19305 NC_022364.1 4049460 4050500 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate ABC transporter substrate-binding protein complement(4049460..4050500) Escherichia coli LY180 16981530 YP_008566907.1 CDS LY180_19310 NC_022364.1 4050748 4051821 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(4050748..4051821) Escherichia coli LY180 16981531 YP_008566908.1 CDS LY180_19315 NC_022364.1 4051832 4054354 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD complement(4051832..4054354) Escherichia coli LY180 16981532 YP_008566909.1 CDS lpfA NC_022364.1 4055158 4055730 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein complement(4055158..4055730) Escherichia coli LY180 16981533 YP_008566910.1 CDS LY180_19335 NC_022364.1 4056032 4057861 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucosamine--fructose-6-phosphate aminotransferase complement(4056032..4057861) Escherichia coli LY180 16981534 YP_008566911.1 CDS glmU NC_022364.1 4058023 4059393 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(4058023..4059393) Escherichia coli LY180 16981535 YP_008566912.1 CDS LY180_19345 NC_022364.1 4059448 4059534 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4059448..4059534) Escherichia coli LY180 16981536 YP_008566913.1 CDS atpC NC_022364.1 4059744 4060163 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit epsilon complement(4059744..4060163) Escherichia coli LY180 16981537 YP_008566914.1 CDS LY180_19355 NC_022364.1 4060184 4061566 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit beta complement(4060184..4061566) Escherichia coli LY180 16981538 YP_008566915.1 CDS LY180_19360 NC_022364.1 4061593 4062456 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit gamma complement(4061593..4062456) Escherichia coli LY180 16981539 YP_008566916.1 CDS LY180_19365 NC_022364.1 4062507 4064048 R Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit alpha complement(4062507..4064048) Escherichia coli LY180 16981540 YP_008566917.1 CDS LY180_19370 NC_022364.1 4064061 4064594 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit delta complement(4064061..4064594) Escherichia coli LY180 16981541 YP_008566918.1 CDS LY180_19375 NC_022364.1 4064609 4065079 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit B complement(4064609..4065079) Escherichia coli LY180 16981542 YP_008566919.1 CDS LY180_19380 NC_022364.1 4065141 4065380 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit C complement(4065141..4065380) Escherichia coli LY180 16981543 YP_008566920.1 CDS LY180_19385 NC_022364.1 4065427 4066242 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit A complement(4065427..4066242) Escherichia coli LY180 16981544 YP_008566921.1 CDS LY180_19390 NC_022364.1 4066251 4066631 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; Derived by automated computational analysis using gene prediction method: Protein Homology.; F0F1 ATP synthase subunit I complement(4066251..4066631) Escherichia coli LY180 16981545 YP_008566922.1 CDS gidB NC_022364.1 4067248 4067871 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(4067248..4067871) Escherichia coli LY180 16981546 YP_008566923.1 CDS gidA NC_022364.1 4067935 4069824 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA uridine 5-carboxymethylaminomethyl modification protein complement(4067935..4069824) Escherichia coli LY180 16981547 YP_008566924.1 CDS LY180_19405 NC_022364.1 4070203 4070646 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN-binding protein MioC complement(4070203..4070646) Escherichia coli LY180 16981548 YP_008566925.1 CDS LY180_19410 NC_022364.1 4070736 4071194 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4070736..4071194) Escherichia coli LY180 16981549 YP_008566926.1 CDS LY180_19415 NC_022364.1 4071346 4072338 D catalyzes the formation of asparagine from aspartate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; asparagine synthetase AsnA 4071346..4072338 Escherichia coli LY180 16981550 YP_008566927.1 CDS yieM NC_022364.1 4072343 4073794 R contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX farnesyltransferase complement(4072343..4073794) Escherichia coli LY180 16981551 YP_008566928.1 CDS LY180_19425 NC_022364.1 4073788 4075284 R interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory ATPase RavA complement(4073788..4075284) Escherichia coli LY180 16981552 YP_008566929.1 CDS trkD NC_022364.1 4075507 4077375 D Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter Kup 4075507..4077375 Escherichia coli LY180 16981553 YP_008566930.1 CDS LY180_19435 NC_022364.1 4077542 4077961 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose pyranase 4077542..4077961 Escherichia coli LY180 16981554 YP_008566931.1 CDS LY180_19440 NC_022364.1 4077969 4079474 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein 4077969..4079474 Escherichia coli LY180 16981555 YP_008566932.1 CDS LY180_19445 NC_022364.1 4079479 4079814 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; ABC transporter permease 4079479..4079814 Escherichia coli LY180 16981556 YP_008566933.1 CDS LY180_19450 NC_022364.1 4079765 4080412 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4079765..4080412 Escherichia coli LY180 16981557 YP_008566934.1 CDS LY180_19455 NC_022364.1 4080378 4081805 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4080378..4081805) Escherichia coli LY180 16981558 YP_008566935.1 CDS LY180_19460 NC_022364.1 4081828 4082520 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(4081828..4082520) Escherichia coli LY180 16981559 YP_008566936.1 CDS LY180_19495 NC_022364.1 4088321 4089160 R Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4088321..4089160) Escherichia coli LY180 16981566 YP_008566937.1 CDS LY180_19500 NC_022364.1 4089279 4089617 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4089279..4089617 Escherichia coli LY180 16981567 YP_008566938.1 CDS LY180_19505 NC_022364.1 4089642 4091162 R among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4089642..4091162) Escherichia coli LY180 16981568 YP_008566939.1 CDS LY180_19510 NC_022364.1 4091317 4091406 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4091317..4091406 Escherichia coli LY180 16981569 YP_008566940.1 CDS LY180_19515 NC_022364.1 4091753 4093399 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 4091753..4093399 Escherichia coli LY180 16981570 YP_008566941.1 CDS ilvM NC_022364.1 4093396 4093659 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetolactate synthase 4093396..4093659 Escherichia coli LY180 16981571 YP_008566942.1 CDS LY180_19525 NC_022364.1 4093679 4094608 D Derived by automated computational analysis using gene prediction method: Protein Homology.; branched-chain amino acid aminotransferase 4093679..4094608 Escherichia coli LY180 16981572 YP_008566943.1 CDS LY180_19530 NC_022364.1 4094673 4096523 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; dihydroxy-acid dehydratase 4094673..4096523 Escherichia coli LY180 16981573 YP_008566944.1 CDS LY180_19535 NC_022364.1 4096526 4098070 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine dehydratase 4096526..4098070 Escherichia coli LY180 16981574 YP_008566945.1 CDS LY180_19540 NC_022364.1 4098122 4099015 R participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4098122..4099015) Escherichia coli LY180 16981575 YP_008566946.1 CDS LY180_19545 NC_022364.1 4099165 4100640 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ketol-acid reductoisomerase 4099165..4100640 Escherichia coli LY180 16981576 YP_008566947.1 CDS LY180_19550 NC_022364.1 4100727 4101008 R rotamase C; accelerates isomerization of the peptidyl prolyl bond; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase complement(4100727..4101008) Escherichia coli LY180 16981577 YP_008566948.1 CDS LY180_19555 NC_022364.1 4101207 4101656 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4101207..4101656) Escherichia coli LY180 16981578 YP_008566949.1 CDS LY180_19560 NC_022364.1 4101873 4103894 D single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase Rep 4101873..4103894 Escherichia coli LY180 16981579 YP_008566950.1 CDS LY180_19565 NC_022364.1 4103941 4105425 R catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; Derived by automated computational analysis using gene prediction method: Protein Homology.; guanosine pentaphosphate phosphohydrolase complement(4103941..4105425) Escherichia coli LY180 16981580 YP_008566951.1 CDS LY180_19570 NC_022364.1 4105559 4106824 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA helicase complement(4105559..4106824) Escherichia coli LY180 16981581 YP_008566952.1 CDS trxA NC_022364.1 4106955 4107284 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thioredoxin 4106955..4107284 Escherichia coli LY180 16981582 YP_008566953.1 CDS LY180_19580 NC_022364.1 4107425 4107526 D Derived by automated computational analysis using gene prediction method: Protein Homology.; rho operon leader peptide 4107425..4107526 Escherichia coli LY180 16981583 YP_008566954.1 CDS rho NC_022364.1 4107611 4108870 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription termination factor Rho 4107611..4108870 Escherichia coli LY180 16981584 YP_008566955.1 CDS LY180_19590 NC_022364.1 4108880 4109098 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4108880..4109098 Escherichia coli LY180 16981585 YP_008566956.1 CDS LY180_19595 NC_022364.1 4109110 4110213 D catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4109110..4110213 Escherichia coli LY180 16981586 YP_008566957.1 CDS LY180_19600 NC_022364.1 4110225 4111271 D Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide biosynthesis protein WzzE 4110225..4111271 Escherichia coli LY180 16981587 YP_008566958.1 CDS LY180_19605 NC_022364.1 4111327 4112457 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylglucosamine 2-epimerase 4111327..4112457 Escherichia coli LY180 16981588 YP_008566959.1 CDS wecC NC_022364.1 4112454 4113716 D catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosamine dehydrogenase 4112454..4113716 Escherichia coli LY180 16981589 YP_008566960.1 CDS LY180_19615 NC_022364.1 4113716 4114783 D Derived by automated computational analysis using gene prediction method: Protein Homology.; dTDP-glucose 4,6-dehydratase 4113716..4114783 Escherichia coli LY180 16981590 YP_008566961.1 CDS LY180_19620 NC_022364.1 4114802 4115683 D Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-1-phosphate thymidylyltransferase 4114802..4115683 Escherichia coli LY180 16981591 YP_008566962.1 CDS LY180_19625 NC_022364.1 4115661 4116335 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-fucosamine acetyltransferase 4115661..4116335 Escherichia coli LY180 16981592 YP_008566963.1 CDS LY180_19630 NC_022364.1 4116340 4117470 D catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; TDP-4-oxo-6-deoxy-D-glucose aminotransferase 4116340..4117470 Escherichia coli LY180 16981593 YP_008566964.1 CDS LY180_19635 NC_022364.1 4117472 4118722 D involved in the movement of lipid III across the membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4117472..4118722 Escherichia coli LY180 16981594 YP_008566965.1 CDS LY180_19640 NC_022364.1 4118719 4119798 D catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-alpha-L-fucosyltransferase 4118719..4119798 Escherichia coli LY180 16981595 YP_008566966.1 CDS LY180_19645 NC_022364.1 4119795 4121147 D enterobacterial common antigen polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.; polymerase 4119795..4121147 Escherichia coli LY180 16981596 YP_008566967.1 CDS LY180_19650 NC_022364.1 4121150 4121890 D Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetyl-D-mannosaminuronic acid transferase 4121150..4121890 Escherichia coli LY180 16981597 YP_008566968.1 CDS proY NC_022364.1 4122081 4123466 D cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4122081..4123466 Escherichia coli LY180 16981598 YP_008566969.1 CDS LY180_19680 NC_022364.1 4124152 4125387 D Derived by automated computational analysis using gene prediction method: Protein Homology.; arylsulfatase 4124152..4125387 Escherichia coli LY180 16981603 YP_008566970.1 CDS LY180_19685 NC_022364.1 4125471 4125632 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; arylsulfatase complement(4125471..4125632) Escherichia coli LY180 16981604 YP_008566971.1 CDS LY180_19690 NC_022364.1 4126311 4127507 R Derived by automated computational analysis using gene prediction method: Protein Homology.; protoheme IX biogenesis protein complement(4126311..4127507) Escherichia coli LY180 16981605 YP_008566972.1 CDS LY180_19695 NC_022364.1 4127510 4128709 R Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen III C-methyltransferase complement(4127510..4128709) Escherichia coli LY180 16981606 YP_008566973.1 CDS hemD NC_022364.1 4128731 4129471 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen-III synthase complement(4128731..4129471) Escherichia coli LY180 16981607 YP_008566974.1 CDS hemC NC_022364.1 4129468 4130409 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; porphobilinogen deaminase complement(4129468..4130409) Escherichia coli LY180 16981608 YP_008566975.1 CDS cyaA NC_022364.1 4130796 4133342 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylate cyclase 4130796..4133342 Escherichia coli LY180 16981609 YP_008566976.1 CDS cyaY NC_022364.1 4133382 4133702 R iron-dependent inhibitor of iron-sulfur cluster formation; iron-binding and oxidizing protein; defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.; frataxin complement(4133382..4133702) Escherichia coli LY180 16981610 YP_008566977.1 CDS LY180_19720 NC_022364.1 4134165 4134368 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4134165..4134368 Escherichia coli LY180 16981611 YP_008566978.1 CDS dapF NC_022364.1 4134405 4135229 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diaminopimelate epimerase 4134405..4135229 Escherichia coli LY180 16981612 YP_008566979.1 CDS LY180_19730 NC_022364.1 4135226 4135933 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4135226..4135933 Escherichia coli LY180 16981613 YP_008566980.1 CDS xerC NC_022364.1 4135930 4136826 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase XerC 4135930..4136826 Escherichia coli LY180 16981614 YP_008566981.1 CDS LY180_19740 NC_022364.1 4136826 4137542 D YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; flavin mononucleotide phosphatase 4136826..4137542 Escherichia coli LY180 16981615 YP_008566982.1 CDS uvrD NC_022364.1 4137626 4139788 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-dependent helicase 4137626..4139788 Escherichia coli LY180 16981616 YP_008566983.1 CDS LY180_19750 NC_022364.1 4139935 4140699 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4139935..4140699) Escherichia coli LY180 16981617 YP_008566984.1 CDS LY180_19755 NC_022364.1 4140920 4141054 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4140920..4141054) Escherichia coli LY180 16981618 YP_008566985.1 CDS LY180_19760 NC_022364.1 4141069 4142019 D responsible for the influx of magnesium ions; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium/nickel/cobalt transporter CorA 4141069..4142019 Escherichia coli LY180 16981619 YP_008566986.1 CDS LY180_19770 NC_022364.1 4142549 4142884 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4142549..4142884) Escherichia coli LY180 16981621 YP_008566987.1 CDS LY180_19775 NC_022364.1 4142897 4144105 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4142897..4144105) Escherichia coli LY180 16981622 YP_008566988.1 CDS LY180_19780 NC_022364.1 4144175 4144735 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4144175..4144735) Escherichia coli LY180 16981623 YP_008566989.1 CDS LY180_19785 NC_022364.1 4144949 4145068 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; magnesium transporter 4144949..4145068 Escherichia coli LY180 16981624 YP_008566990.1 CDS LY180_19790 NC_022364.1 4145690 4145989 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4145690..4145989 Escherichia coli LY180 16981625 YP_008566991.1 CDS LY180_19795 NC_022364.1 4146036 4146923 R Derived by automated computational analysis using gene prediction method: Protein Homology.; chloramphenical resistance permease RarD complement(4146036..4146923) Escherichia coli LY180 16981626 YP_008566992.1 CDS LY180_19800 NC_022364.1 4146975 4147442 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4146975..4147442) Escherichia coli LY180 16981627 YP_008566993.1 CDS LY180_19805 NC_022364.1 4147607 4148476 D catalyzes the hydrolysis of phosphatidylcholine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phospholipase A 4147607..4148476 Escherichia coli LY180 16981628 YP_008566994.1 CDS LY180_19810 NC_022364.1 4148603 4150438 D functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent DNA helicase RecQ 4148603..4150438 Escherichia coli LY180 16981629 YP_008566995.1 CDS LY180_19815 NC_022364.1 4150502 4151122 D Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB 4150502..4151122 Escherichia coli LY180 16981630 YP_008566996.1 CDS rhtB NC_022364.1 4151184 4151804 R Derived by automated computational analysis using gene prediction method: Protein Homology.; threonine transporter RhtB complement(4151184..4151804) Escherichia coli LY180 16981631 YP_008566997.1 CDS LY180_19825 NC_022364.1 4151915 4152937 D lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysophospholipase L2 4151915..4152937 Escherichia coli LY180 16981632 YP_008566998.1 CDS LY180_19830 NC_022364.1 4152945 4153745 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hydrolase 4152945..4153745 Escherichia coli LY180 16981633 YP_008566999.1 CDS LY180_19835 NC_022364.1 4153821 4154720 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4153821..4154720 Escherichia coli LY180 16981634 YP_008567000.1 CDS LY180_19840 NC_022364.1 4154608 4155561 R homocysteine-binding ; positive regulator of metA, metE and metH; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4154608..4155561) Escherichia coli LY180 16981635 YP_008567001.1 CDS LY180_19845 NC_022364.1 4155684 4157945 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 4155684..4157945 Escherichia coli LY180 16981636 YP_008567002.1 CDS LY180_19850 NC_022364.1 4157984 4158799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carboxymethylenebutenolidase complement(4157984..4158799) Escherichia coli LY180 16981637 YP_008567003.1 CDS LY180_19855 NC_022364.1 4159061 4159822 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; uridine phosphorylase 4159061..4159822 Escherichia coli LY180 16981638 YP_008567004.1 CDS LY180_19860 NC_022364.1 4159963 4161390 D YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA recombination protein RmuC 4159963..4161390 Escherichia coli LY180 16981639 YP_008567005.1 CDS ubiE NC_022364.1 4161485 4162240 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone/menaquinone biosynthesis methyltransferase 4161485..4162240 Escherichia coli LY180 16981640 YP_008567006.1 CDS LY180_19870 NC_022364.1 4162254 4162859 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4162254..4162859 Escherichia coli LY180 16981641 YP_008567007.1 CDS ubiB NC_022364.1 4162856 4164496 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; Derived by automated computational analysis using gene prediction method: Protein Homology.; ubiquinone biosynthesis protein UbiB 4162856..4164496 Escherichia coli LY180 16981642 YP_008567008.1 CDS tatA NC_022364.1 4164575 4164844 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit TatA 4164575..4164844 Escherichia coli LY180 16981643 YP_008567009.1 CDS LY180_19885 NC_022364.1 4164848 4165363 D mediates the export of protein precursors bearing twin-arginine signal peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; translocase 4164848..4165363 Escherichia coli LY180 16981644 YP_008567010.1 CDS LY180_19890 NC_022364.1 4165366 4166142 D with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; twin-arginine protein translocation system subunit TatC 4165366..4166142 Escherichia coli LY180 16981645 YP_008567011.1 CDS rfaH NC_022364.1 4166963 4167451 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4166963..4167451) Escherichia coli LY180 16981647 YP_008567012.1 CDS LY180_19905 NC_022364.1 4167618 4169111 D catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-polyprenyl-4-hydroxybenzoate decarboxylase 4167618..4169111 Escherichia coli LY180 16981648 YP_008567013.1 CDS fre NC_022364.1 4169157 4169858 D NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase 4169157..4169858 Escherichia coli LY180 16981649 YP_008567014.1 CDS fadA NC_022364.1 4170050 4171213 R FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-ketoacyl-CoA thiolase complement(4170050..4171213) Escherichia coli LY180 16981650 YP_008567015.1 CDS fadB NC_022364.1 4171223 4173412 R includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional fatty acid oxidation complex subunit alpha complement(4171223..4173412) Escherichia coli LY180 16981651 YP_008567016.1 CDS LY180_19925 NC_022364.1 4173602 4174933 D catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; Derived by automated computational analysis using gene prediction method: Protein Homology.; proline dipeptidase 4173602..4174933 Escherichia coli LY180 16981652 YP_008567017.1 CDS LY180_19930 NC_022364.1 4174933 4175547 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4174933..4175547 Escherichia coli LY180 16981653 YP_008567018.1 CDS LY180_19935 NC_022364.1 4175586 4177037 D Derived by automated computational analysis using gene prediction method: Protein Homology.; potassium transporter 4175586..4177037 Escherichia coli LY180 16981654 YP_008567019.1 CDS hemG NC_022364.1 4177049 4177594 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; Derived by automated computational analysis using gene prediction method: Protein Homology.; protoporphyrinogen oxidase 4177049..4177594 Escherichia coli LY180 16981655 YP_008567020.1 CDS LY180_19970 NC_022364.1 4183176 4183703 R in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4183176..4183703) Escherichia coli LY180 16981661 YP_008567021.1 CDS mobA NC_022364.1 4183685 4184269 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(4183685..4184269) Escherichia coli LY180 16981662 YP_008567022.1 CDS LY180_19980 NC_022364.1 4184339 4184608 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4184339..4184608 Escherichia coli LY180 16981663 YP_008567023.1 CDS LY180_19985 NC_022364.1 4184685 4185671 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; Derived by automated computational analysis using gene prediction method: Protein Homology.; serine/threonine protein kinase 4184685..4185671 Escherichia coli LY180 16981664 YP_008567024.1 CDS LY180_19990 NC_022364.1 4185688 4186314 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol-disulfide isomerase 4185688..4186314 Escherichia coli LY180 16981665 YP_008567025.1 CDS LY180_19995 NC_022364.1 4186468 4186761 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4186468..4186761 Escherichia coli LY180 16981666 YP_008567026.1 CDS LY180_20000 NC_022364.1 4186865 4188073 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4186865..4188073 Escherichia coli LY180 16981667 YP_008567027.1 CDS LY180_20005 NC_022364.1 4188070 4189236 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4188070..4189236 Escherichia coli LY180 16981668 YP_008567028.1 CDS LY180_20010 NC_022364.1 4189277 4190209 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acyltransferase complement(4189277..4190209) Escherichia coli LY180 16981669 YP_008567029.1 CDS LY180_20015 NC_022364.1 4190329 4190571 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4190329..4190571) Escherichia coli LY180 16981670 YP_008567030.1 CDS LY180_20020 NC_022364.1 4190573 4193359 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase I 4190573..4193359 Escherichia coli LY180 16981671 YP_008567031.1 CDS LY180_20025 NC_022364.1 4193741 4194373 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YsxC complement(4193741..4194373) Escherichia coli LY180 16981672 YP_008567032.1 CDS LY180_20030 NC_022364.1 4194955 4195464 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase activator 4194955..4195464 Escherichia coli LY180 16981673 YP_008567033.1 CDS LY180_20035 NC_022364.1 4195653 4197026 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.; coproporphyrinogen III oxidase 4195653..4197026 Escherichia coli LY180 16981674 YP_008567034.1 CDS glnG NC_022364.1 4197438 4198856 R response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(I) complement(4197438..4198856) Escherichia coli LY180 16981675 YP_008567035.1 CDS glnL NC_022364.1 4198859 4199908 R sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrogen regulation protein NR(II) complement(4198859..4199908) Escherichia coli LY180 16981676 YP_008567036.1 CDS LY180_20050 NC_022364.1 4200007 4200186 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4200007..4200186 Escherichia coli LY180 16981677 YP_008567037.1 CDS glnA NC_022364.1 4200227 4201636 R forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine synthetase complement(4200227..4201636) Escherichia coli LY180 16981678 YP_008567038.1 CDS LY180_20060 NC_022364.1 4202009 4203832 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein TypA 4202009..4203832 Escherichia coli LY180 16981679 YP_008567039.1 CDS LY180_20065 NC_022364.1 4204049 4204759 D Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator 4204049..4204759 Escherichia coli LY180 16981680 YP_008567040.1 CDS LY180_20070 NC_022364.1 4204767 4205747 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4204767..4205747 Escherichia coli LY180 16981681 YP_008567041.1 CDS LY180_20075 NC_022364.1 4205849 4207114 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4205849..4207114 Escherichia coli LY180 16981682 YP_008567042.1 CDS ompL NC_022364.1 4207205 4207897 R porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane porin L complement(4207205..4207897) Escherichia coli LY180 16981683 YP_008567043.1 CDS LY180_20085 NC_022364.1 4207965 4209368 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4207965..4209368) Escherichia coli LY180 16981684 YP_008567044.1 CDS LY180_20090 NC_022364.1 4209411 4210796 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4209411..4210796) Escherichia coli LY180 16981685 YP_008567045.1 CDS LY180_20095 NC_022364.1 4210842 4212878 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-glucosidase complement(4210842..4212878) Escherichia coli LY180 16981686 YP_008567046.1 CDS LY180_20100 NC_022364.1 4213077 4214003 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldose-1-epimerase complement(4213077..4214003) Escherichia coli LY180 16981687 YP_008567047.1 CDS LY180_20105 NC_022364.1 4214117 4215358 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar isomerase complement(4214117..4215358) Escherichia coli LY180 16981688 YP_008567048.1 CDS LY180_20110 NC_022364.1 4215375 4216253 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aldolase complement(4215375..4216253) Escherichia coli LY180 16981689 YP_008567049.1 CDS LY180_20115 NC_022364.1 4216277 4217173 R catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH-dependent gamma-hydroxybutyrate dehydrogenase complement(4216277..4217173) Escherichia coli LY180 16981690 YP_008567050.1 CDS LY180_20120 NC_022364.1 4217341 4218237 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar kinase 4217341..4218237 Escherichia coli LY180 16981691 YP_008567051.1 CDS LY180_20125 NC_022364.1 4218271 4219056 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DeoR family transcriptional regulator 4218271..4219056 Escherichia coli LY180 16981692 YP_008567052.1 CDS LY180_20130 NC_022364.1 4219155 4219754 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-D-glucose-1-phosphatase 4219155..4219754 Escherichia coli LY180 16981693 YP_008567053.1 CDS LY180_20135 NC_022364.1 4219748 4220620 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4219748..4220620 Escherichia coli LY180 16981694 YP_008567054.1 CDS LY180_20140 NC_022364.1 4220617 4221054 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-tyrosyl-tRNA(Tyr) deacylase 4220617..4221054 Escherichia coli LY180 16981695 YP_008567055.1 CDS LY180_20145 NC_022364.1 4221051 4222040 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4221051..4222040 Escherichia coli LY180 16981696 YP_008567056.1 CDS LY180_20150 NC_022364.1 4222104 4223012 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lipase complement(4222104..4223012) Escherichia coli LY180 16981697 YP_008567057.1 CDS LY180_20155 NC_022364.1 4223241 4223552 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; transcription elongation factor GreB 4223241..4223552 Escherichia coli LY180 16981698 YP_008567058.1 CDS LY180_20160 NC_022364.1 4223553 4223843 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Cro/Cl family transcriptional regulator 4223553..4223843 Escherichia coli LY180 16981699 YP_008567059.1 CDS LY180_20165 NC_022364.1 4223929 4224021 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4223929..4224021 Escherichia coli LY180 16981700 YP_008567060.1 CDS LY180_20170 NC_022364.1 4224448 4224666 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4224448..4224666 Escherichia coli LY180 16981701 YP_008567061.1 CDS LY180_20175 NC_022364.1 4224885 4225127 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4224885..4225127 Escherichia coli LY180 16981702 YP_008567062.1 CDS LY180_20185 NC_022364.1 4225457 4226386 R required for the formation of active formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein FdhE complement(4225457..4226386) Escherichia coli LY180 16981704 YP_008567063.1 CDS LY180_20190 NC_022364.1 4226383 4227018 R cytochrome b556(FDO) component; heme containing; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit gamma complement(4226383..4227018) Escherichia coli LY180 16981705 YP_008567064.1 CDS LY180_20195 NC_022364.1 4227015 4227917 R beta subunit; involved in the use of formate as an electron donor during aerobic respiration; acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit); Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase-N subunit beta complement(4227015..4227917) Escherichia coli LY180 16981706 YP_008567065.1 CDS LY180_20200 NC_022364.1 4227930 4230344 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; formate dehydrogenase subunit alpha complement(4227930..4230344) Escherichia coli LY180 16981707 YP_008567066.1 CDS LY180_20205 NC_022364.1 4230393 4230980 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sulfate ABC transporter substrate-binding protein complement(4230393..4230980) Escherichia coli LY180 16981708 YP_008567067.1 CDS LY180_20210 NC_022364.1 4231174 4232007 D involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate dehydrogenase accessory protein 4231174..4232007 Escherichia coli LY180 16981709 YP_008567068.1 CDS LY180_20215 NC_022364.1 4232160 4233200 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4232160..4233200 Escherichia coli LY180 16981710 YP_008567069.1 CDS LY180_20220 NC_022364.1 4233250 4234998 R repressor of the frv operon, involved in phosphoenolpyruvate:sugar phosphotransferase system; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(4233250..4234998) Escherichia coli LY180 16981711 YP_008567070.1 CDS LY180_20225 NC_022364.1 4234998 4236068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase complement(4234998..4236068) Escherichia coli LY180 16981712 YP_008567071.1 CDS LY180_20230 NC_022364.1 4236058 4237509 R Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIBC complement(4236058..4237509) Escherichia coli LY180 16981713 YP_008567072.1 CDS LY180_20235 NC_022364.1 4237520 4237966 R with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars; possibly responsible for the sugar specificity of the system; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit EIIA complement(4237520..4237966) Escherichia coli LY180 16981714 YP_008567073.1 CDS LY180_20240 NC_022364.1 4238267 4238581 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-rhamnose mutarotase complement(4238267..4238581) Escherichia coli LY180 16981715 YP_008567074.1 CDS LY180_20245 NC_022364.1 4238591 4239415 R Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulose-1-phosphate aldolase complement(4238591..4239415) Escherichia coli LY180 16981716 YP_008567075.1 CDS LY180_20250 NC_022364.1 4239657 4240916 R catalyzes the formation of L-rhamnulose from L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnose isomerase complement(4239657..4240916) Escherichia coli LY180 16981717 YP_008567076.1 CDS rhaB NC_022364.1 4240913 4242382 R catalyzes the ATP-dependent phosphorylation of rhamnulose; Derived by automated computational analysis using gene prediction method: Protein Homology.; rhamnulokinase complement(4240913..4242382) Escherichia coli LY180 16981718 YP_008567077.1 CDS LY180_20260 NC_022364.1 4242461 4242610 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4242461..4242610 Escherichia coli LY180 16981719 YP_008567078.1 CDS LY180_20265 NC_022364.1 4242670 4243506 D Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator 4242670..4243506 Escherichia coli LY180 16981720 YP_008567079.1 CDS LY180_20270 NC_022364.1 4243490 4244428 D activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4243490..4244428 Escherichia coli LY180 16981721 YP_008567080.1 CDS LY180_20275 NC_022364.1 4244425 4245459 R transports L-rhamnose and L-lyxose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:proton symporter complement(4244425..4245459) Escherichia coli LY180 16981722 YP_008567081.1 CDS LY180_20280 NC_022364.1 4245744 4246364 D SodA; manganese binding; only present under aerobic conditions; destroys free radicals; Derived by automated computational analysis using gene prediction method: Protein Homology.; superoxide dismutase 4245744..4246364 Escherichia coli LY180 16981723 YP_008567082.1 CDS LY180_20285 NC_022364.1 4246405 4246521 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4246405..4246521) Escherichia coli LY180 16981724 YP_008567083.1 CDS LY180_20290 NC_022364.1 4246624 4247607 D transports degraded pectin products into the bacterial cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; 2-keto-3-deoxygluconate permease 4246624..4247607 Escherichia coli LY180 16981725 YP_008567084.1 CDS LY180_20295 NC_022364.1 4247756 4248430 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-N-hydroxylaminopurine resistance protein 4247756..4248430 Escherichia coli LY180 16981726 YP_008567085.1 CDS cpxA NC_022364.1 4248536 4249909 R part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; Derived by automated computational analysis using gene prediction method: Protein Homology.; histidine kinase complement(4248536..4249909) Escherichia coli LY180 16981727 YP_008567086.1 CDS LY180_20305 NC_022364.1 4249906 4250604 R response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4249906..4250604) Escherichia coli LY180 16981728 YP_008567087.1 CDS cpxP NC_022364.1 4250751 4251254 D repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor CpxP 4250751..4251254 Escherichia coli LY180 16981729 YP_008567088.1 CDS LY180_20315 NC_022364.1 4251440 4252420 R Int; binds dsDNA; cleaves and religates DNA through a covalent phosphotyrosine intermediate; bacteriophage P2 Int mediates the site-specific recombination event leading to integration or excision of the phage genome into or out of the Escherichia coli chromosome; integrative recombination occurs between the phage attachment site attP and the bacterial attachment site attB, integrative recombination also requires E. coli IHF; excision requires IHF and the phage-encoded Cox protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase complement(4251440..4252420) Escherichia coli LY180 16981730 YP_008567089.1 CDS LY180_20320 NC_022364.1 4252490 4252783 R Derived by automated computational analysis using gene prediction method: Protein Homology.; repressor complement(4252490..4252783) Escherichia coli LY180 16981731 YP_008567090.1 CDS LY180_20325 NC_022364.1 4252936 4253208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; regulatory protein 4252936..4253208 Escherichia coli LY180 16981732 YP_008567091.1 CDS LY180_20330 NC_022364.1 4253211 4253381 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4253211..4253381 Escherichia coli LY180 16981733 YP_008567092.1 CDS LY180_20335 NC_022364.1 4253378 4253878 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4253378..4253878 Escherichia coli LY180 16981734 YP_008567093.1 CDS LY180_20340 NC_022364.1 4253942 4254166 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4253942..4254166 Escherichia coli LY180 16981735 YP_008567094.1 CDS LY180_20345 NC_022364.1 4254166 4254468 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4254166..4254468 Escherichia coli LY180 16981736 YP_008567095.1 CDS LY180_20350 NC_022364.1 4254468 4254692 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4254468..4254692 Escherichia coli LY180 16981737 YP_008567096.1 CDS LY180_20355 NC_022364.1 4254689 4254964 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4254689..4254964 Escherichia coli LY180 16981738 YP_008567097.1 CDS LY180_20360 NC_022364.1 4254954 4257239 D Derived by automated computational analysis using gene prediction method: Protein Homology.; replication protein 4254954..4257239 Escherichia coli LY180 16981739 YP_008567098.1 CDS LY180_20365 NC_022364.1 4257236 4257691 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein 4257236..4257691 Escherichia coli LY180 16981740 YP_008567099.1 CDS LY180_20370 NC_022364.1 4257691 4257897 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4257691..4257897 Escherichia coli LY180 16981741 YP_008567100.1 CDS LY180_20375 NC_022364.1 4258218 4259078 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; HsdRM 4258218..4259078 Escherichia coli LY180 16981742 YP_008567101.1 CDS LY180_20380 NC_022364.1 4259075 4260112 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4259075..4260112) Escherichia coli LY180 16981743 YP_008567102.1 CDS LY180_20385 NC_022364.1 4260105 4261178 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4260105..4261178) Escherichia coli LY180 16981744 YP_008567103.1 CDS LY180_20390 NC_022364.1 4261594 4262628 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Presumed portal vertex protein complement(4261594..4262628) Escherichia coli LY180 16981745 YP_008567104.1 CDS LY180_20395 NC_022364.1 4262628 4264400 R Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase complement(4262628..4264400) Escherichia coli LY180 16981746 YP_008567105.1 CDS LY180_20400 NC_022364.1 4264574 4265428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; precorrin-8W decarboxylase 4264574..4265428 Escherichia coli LY180 16981747 YP_008567106.1 CDS LY180_20405 NC_022364.1 4266565 4267308 D Derived by automated computational analysis using gene prediction method: Protein Homology.; terminase 4266565..4267308 Escherichia coli LY180 16981748 YP_008567107.1 CDS LY180_20410 NC_022364.1 4267408 4267917 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Head completion/stabilization protein 4267408..4267917 Escherichia coli LY180 16981749 YP_008567108.1 CDS LY180_20415 NC_022364.1 4267917 4268120 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4267917..4268120 Escherichia coli LY180 16981750 YP_008567109.1 CDS LY180_20420 NC_022364.1 4268124 4268405 D Derived by automated computational analysis using gene prediction method: Protein Homology.; holin 4268124..4268405 Escherichia coli LY180 16981751 YP_008567110.1 CDS LY180_20425 NC_022364.1 4268405 4268902 D Derived by automated computational analysis using gene prediction method: Protein Homology.; lysozyme 4268405..4268902 Escherichia coli LY180 16981752 YP_008567111.1 CDS LY180_20430 NC_022364.1 4268917 4269342 D Derived by automated computational analysis using gene prediction method: Protein Homology.; protein lysA 4268917..4269342 Escherichia coli LY180 16981753 YP_008567112.1 CDS LY180_20435 NC_022364.1 4269330 4269755 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4269330..4269755 Escherichia coli LY180 16981754 YP_008567113.1 CDS LY180_20440 NC_022364.1 4269742 4269900 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysC 4269742..4269900 Escherichia coli LY180 16981755 YP_008567114.1 CDS LY180_20445 NC_022364.1 4269863 4270330 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber protein 4269863..4270330 Escherichia coli LY180 16981756 YP_008567115.1 CDS LY180_20450 NC_022364.1 4270323 4270775 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4270323..4270775 Escherichia coli LY180 16981757 YP_008567116.1 CDS LY180_20455 NC_022364.1 4270842 4271477 D Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein 4270842..4271477 Escherichia coli LY180 16981758 YP_008567117.1 CDS LY180_20460 NC_022364.1 4271474 4271821 D Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein 4271474..4271821 Escherichia coli LY180 16981759 YP_008567118.1 CDS LY180_20465 NC_022364.1 4271826 4272734 D Derived by automated computational analysis using gene prediction method: Protein Homology.; baseplate assembly protein 4271826..4272734 Escherichia coli LY180 16981760 YP_008567119.1 CDS LY180_20470 NC_022364.1 4272727 4273257 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4272727..4273257 Escherichia coli LY180 16981761 YP_008567120.1 CDS LY180_20475 NC_022364.1 4273268 4275277 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phage tail protein 4273268..4275277 Escherichia coli LY180 16981762 YP_008567121.1 CDS LY180_20480 NC_022364.1 4275281 4275808 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail fiber assembly protein 4275281..4275808 Escherichia coli LY180 16981763 YP_008567122.1 CDS LY180_20485 NC_022364.1 4276024 4276923 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4276024..4276923 Escherichia coli LY180 16981764 YP_008567123.1 CDS LY180_20490 NC_022364.1 4277243 4278433 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail sheath protein 4277243..4278433 Escherichia coli LY180 16981765 YP_008567124.1 CDS LY180_20495 NC_022364.1 4278446 4278964 D Derived by automated computational analysis using gene prediction method: Protein Homology.; major tail tube protein 4278446..4278964 Escherichia coli LY180 16981766 YP_008567125.1 CDS LY180_20500 NC_022364.1 4279021 4279296 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4279021..4279296 Escherichia coli LY180 16981767 YP_008567126.1 CDS LY180_20505 NC_022364.1 4279293 4279448 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4279293..4279448 Escherichia coli LY180 16981768 YP_008567127.1 CDS LY180_20510 NC_022364.1 4279441 4281888 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail protein 4279441..4281888 Escherichia coli LY180 16981769 YP_008567128.1 CDS LY180_20515 NC_022364.1 4281903 4282382 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tail assembly protein 4281903..4282382 Escherichia coli LY180 16981770 YP_008567129.1 CDS LY180_20520 NC_022364.1 4282382 4283545 D Derived by automated computational analysis using gene prediction method: Protein Homology.; late control protein D 4282382..4283545 Escherichia coli LY180 16981771 YP_008567130.1 CDS LY180_20525 NC_022364.1 4283564 4283845 D in E. coli K-12 this is in prophage P2 remnant; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4283564..4283845 Escherichia coli LY180 16981772 YP_008567131.1 CDS fieF NC_022364.1 4284082 4284984 D member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron transporter 4284082..4284984 Escherichia coli LY180 16981773 YP_008567132.1 CDS LY180_20535 NC_022364.1 4285165 4286127 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; 6-phosphofructokinase 4285165..4286127 Escherichia coli LY180 16981774 YP_008567133.1 CDS LY180_20545 NC_022364.1 4286447 4287436 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfate transporter subunit 4286447..4287436 Escherichia coli LY180 16981776 YP_008567134.1 CDS LY180_20550 NC_022364.1 4287543 4288298 D Derived by automated computational analysis using gene prediction method: Protein Homology.; CDP-diacylglycerol pyrophosphatase 4287543..4288298 Escherichia coli LY180 16981777 YP_008567135.1 CDS LY180_20555 NC_022364.1 4288353 4289120 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; triosephosphate isomerase complement(4288353..4289120) Escherichia coli LY180 16981778 YP_008567136.1 CDS LY180_20560 NC_022364.1 4289228 4289827 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4289228..4289827) Escherichia coli LY180 16981779 YP_008567137.1 CDS LY180_20565 NC_022364.1 4289928 4290368 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4289928..4290368 Escherichia coli LY180 16981780 YP_008567138.1 CDS LY180_20570 NC_022364.1 4290580 4290879 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4290580..4290879 Escherichia coli LY180 16981781 YP_008567139.1 CDS LY180_20575 NC_022364.1 4290906 4291334 D with UspC and Usp E is involved in resistance to UV radiation; Derived by automated computational analysis using gene prediction method: Protein Homology.; universal stress protein D 4290906..4291334 Escherichia coli LY180 16981782 YP_008567140.1 CDS LY180_20580 NC_022364.1 4291339 4292085 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferredoxin-NADP reductase complement(4291339..4292085) Escherichia coli LY180 16981783 YP_008567141.1 CDS LY180_20585 NC_022364.1 4292182 4293192 R Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose 1,6-bisphosphatase complement(4292182..4293192) Escherichia coli LY180 16981784 YP_008567142.1 CDS glpK NC_022364.1 4293328 4294836 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol kinase complement(4293328..4294836) Escherichia coli LY180 16981785 YP_008567143.1 CDS LY180_20595 NC_022364.1 4294859 4295704 R involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol uptake facilitator GlpF complement(4294859..4295704) Escherichia coli LY180 16981786 YP_008567144.1 CDS LY180_20600 NC_022364.1 4296129 4296374 D interacts with FisZ and is necessary for Z-ring formation; Derived by automated computational analysis using gene prediction method: Protein Homology.; septal ring assembly protein ZapB 4296129..4296374 Escherichia coli LY180 16981787 YP_008567145.1 CDS LY180_20605 NC_022364.1 4296459 4296944 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonuclease activity regulator protein RraA complement(4296459..4296944) Escherichia coli LY180 16981788 YP_008567146.1 CDS LY180_20610 NC_022364.1 4297037 4297963 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 1,4-dihydroxy-2-naphthoate prenyltransferase complement(4297037..4297963) Escherichia coli LY180 16981789 YP_008567147.1 CDS hslU NC_022364.1 4298030 4299361 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4298030..4299361) Escherichia coli LY180 16981790 YP_008567148.1 CDS LY180_20620 NC_022364.1 4299371 4299901 R heat shock protein involved in degradation of misfolded proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; ATP-dependent protease complement(4299371..4299901) Escherichia coli LY180 16981791 YP_008567149.1 CDS LY180_20625 NC_022364.1 4299994 4300953 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsN complement(4299994..4300953) Escherichia coli LY180 16981792 YP_008567150.1 CDS LY180_20630 NC_022364.1 4301045 4302070 R negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4301045..4302070) Escherichia coli LY180 16981793 YP_008567151.1 CDS LY180_20635 NC_022364.1 4302226 4304424 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosome assembly protein PriA complement(4302226..4304424) Escherichia coli LY180 16981794 YP_008567152.1 CDS rpmE NC_022364.1 4304627 4304839 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L31 4304627..4304839 Escherichia coli LY180 16981795 YP_008567153.1 CDS LY180_20645 NC_022364.1 4304999 4309171 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; rhsA 4304999..4309171 Escherichia coli LY180 16981796 YP_008567154.1 CDS LY180_20650 NC_022364.1 4309463 4309741 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4309463..4309741 Escherichia coli LY180 16981797 YP_008567155.1 CDS LY180_20655 NC_022364.1 4310403 4311011 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4310403..4311011) Escherichia coli LY180 16981798 YP_008567156.1 CDS LY180_20660 NC_022364.1 4311246 4312226 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4311246..4312226) Escherichia coli LY180 16981799 YP_008567157.1 CDS LY180_20665 NC_022364.1 4312474 4312791 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4312474..4312791) Escherichia coli LY180 16981800 YP_008567158.1 CDS LY180_20670 NC_022364.1 4313068 4314228 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; cystathionine gamma-synthase 4313068..4314228 Escherichia coli LY180 16981801 YP_008567159.1 CDS metL NC_022364.1 4314231 4316663 D multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional aspartate kinase II/homoserine dehydrogenase II 4314231..4316663 Escherichia coli LY180 16981802 YP_008567160.1 CDS LY180_20680 NC_022364.1 4316802 4316936 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4316802..4316936) Escherichia coli LY180 16981803 YP_008567161.1 CDS metF NC_022364.1 4317012 4317902 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Derived by automated computational analysis using gene prediction method: Protein Homology.; 5,10-methylenetetrahydrofolate reductase 4317012..4317902 Escherichia coli LY180 16981804 YP_008567162.1 CDS LY180_20690 NC_022364.1 4318231 4320411 D has catalase and peroxidase activities; Derived by automated computational analysis using gene prediction method: Protein Homology.; catalase/hydroperoxidase HPI(I) 4318231..4320411 Escherichia coli LY180 16981805 YP_008567163.1 CDS LY180_20695 NC_022364.1 4320505 4321410 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permease 4320505..4321410 Escherichia coli LY180 16981806 YP_008567164.1 CDS LY180_20700 NC_022364.1 4321437 4322054 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4321437..4322054) Escherichia coli LY180 16981807 YP_008567165.1 CDS gldA NC_022364.1 4322329 4323432 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol dehydrogenase complement(4322329..4323432) Escherichia coli LY180 16981809 YP_008567166.1 CDS LY180_20715 NC_022364.1 4323443 4324105 R similar to transaldolase from Escherichia coli; many organisms have multiple copies; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-bisphosphate aldolase complement(4323443..4324105) Escherichia coli LY180 16981810 YP_008567167.1 CDS LY180_20720 NC_022364.1 4324117 4326618 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr; HPr transfers the phosphoryl group to subunit A; subunit IIA transfers a phosphoryl group to subunit IIB; subunit IIB transfers the phosphoryl group to the substrate; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIA complement(4324117..4326618) Escherichia coli LY180 16981811 YP_008567168.1 CDS LY180_20725 NC_022364.1 4326927 4328006 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIC 4326927..4328006 Escherichia coli LY180 16981812 YP_008567169.1 CDS LY180_20730 NC_022364.1 4328021 4328341 D FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4328021..4328341 Escherichia coli LY180 16981813 YP_008567170.1 CDS pflD NC_022364.1 4328392 4330689 D involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate acetyltransferase 4328392..4330689 Escherichia coli LY180 16981814 YP_008567171.1 CDS LY180_20740 NC_022364.1 4330655 4331533 D Derived by automated computational analysis using gene prediction method: Protein Homology.; pyruvate formate lyase II activase 4330655..4331533 Escherichia coli LY180 16981815 YP_008567172.1 CDS LY180_20745 NC_022364.1 4331535 4331876 D FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS fructose transporter subunit IIB 4331535..4331876 Escherichia coli LY180 16981816 YP_008567173.1 CDS LY180_20750 NC_022364.1 4331863 4332714 R Derived by automated computational analysis using gene prediction method: Protein Homology.; AraC family transcriptional regulator complement(4331863..4332714) Escherichia coli LY180 16981817 YP_008567174.1 CDS LY180_20755 NC_022364.1 4332863 4334596 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4332863..4334596) Escherichia coli LY180 16981818 YP_008567175.1 CDS LY180_20760 NC_022364.1 4334779 4337430 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoenolpyruvate carboxylase complement(4334779..4337430) Escherichia coli LY180 16981819 YP_008567176.1 CDS LY180_20765 NC_022364.1 4337782 4338933 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylornithine deacetylase complement(4337782..4338933) Escherichia coli LY180 16981820 YP_008567177.1 CDS LY180_20770 NC_022364.1 4339087 4340091 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyl-gamma-glutamyl-phosphate reductase 4339087..4340091 Escherichia coli LY180 16981821 YP_008567178.1 CDS LY180_20775 NC_022364.1 4340102 4340875 D Derived by automated computational analysis using gene prediction method: Protein Homology.; acetylglutamate kinase 4340102..4340875 Escherichia coli LY180 16981822 YP_008567179.1 CDS LY180_20780 NC_022364.1 4340936 4342309 D catalyzes the formation of arginine from (N-L-arginino)succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.; argininosuccinate lyase 4340936..4342309 Escherichia coli LY180 16981823 YP_008567180.1 CDS LY180_20785 NC_022364.1 4342576 4343493 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4342576..4343493 Escherichia coli LY180 16981824 YP_008567181.1 CDS LY180_20790 NC_022364.1 4343476 4344876 R catalyzes the conversion of NADPH to NADH; Derived by automated computational analysis using gene prediction method: Protein Homology.; soluble pyridine nucleotide transhydrogenase complement(4343476..4344876) Escherichia coli LY180 16981825 YP_008567182.1 CDS LY180_20795 NC_022364.1 4345153 4345857 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4345153..4345857 Escherichia coli LY180 16981826 YP_008567183.1 CDS LY180_20800 NC_022364.1 4345857 4346216 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4345857..4346216 Escherichia coli LY180 16981827 YP_008567184.1 CDS LY180_20805 NC_022364.1 4346256 4347356 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA (uracil-5-)-methyltransferase complement(4346256..4347356) Escherichia coli LY180 16981828 YP_008567185.1 CDS btuB NC_022364.1 4347725 4349569 D involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; Derived by automated computational analysis using gene prediction method: Protein Homology.; vitamin B12/cobalamin outer membrane transporter 4347725..4349569 Escherichia coli LY180 16981829 YP_008567186.1 CDS LY180_20815 NC_022364.1 4349583 4350371 D converts L-glutamate to D-glutamate, a component of peptidoglycan; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; glutamate racemase 4349583..4350371 Escherichia coli LY180 16981830 YP_008567187.1 CDS murB NC_022364.1 4356142 4357170 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylenolpyruvoylglucosamine reductase 4356142..4357170 Escherichia coli LY180 16981835 YP_008567188.1 CDS LY180_20845 NC_022364.1 4357167 4358132 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 4357167..4358132 Escherichia coli LY180 16981836 YP_008567189.1 CDS LY180_20850 NC_022364.1 4358161 4359111 R Derived by automated computational analysis using gene prediction method: Protein Homology.; pantothenate kinase complement(4358161..4359111) Escherichia coli LY180 16981837 YP_008567190.1 CDS tuf NC_022364.1 4360029 4361213 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; elongation factor Tu 4360029..4361213 Escherichia coli LY180 16981842 YP_008567191.1 CDS secE NC_022364.1 4361443 4361826 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; Derived by automated computational analysis using gene prediction method: Protein Homology.; preprotein translocase subunit SecE 4361443..4361826 Escherichia coli LY180 16981843 YP_008567192.1 CDS nusG NC_022364.1 4361828 4362373 D Modulates Rho-dependent transcription termination; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcription antitermination protein NusG 4361828..4362373 Escherichia coli LY180 16981844 YP_008567193.1 CDS LY180_20890 NC_022364.1 4362532 4362960 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L11 4362532..4362960 Escherichia coli LY180 16981845 YP_008567194.1 CDS LY180_20895 NC_022364.1 4362964 4363668 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L1 4362964..4363668 Escherichia coli LY180 16981846 YP_008567195.1 CDS rplJ NC_022364.1 4364081 4364578 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L10 4364081..4364578 Escherichia coli LY180 16981847 YP_008567196.1 CDS LY180_20905 NC_022364.1 4364645 4365010 D Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L7/L12 4364645..4365010 Escherichia coli LY180 16981848 YP_008567197.1 CDS rpoB NC_022364.1 4365330 4369358 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta 4365330..4369358 Escherichia coli LY180 16981849 YP_008567198.1 CDS LY180_20915 NC_022364.1 4369435 4373658 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-directed RNA polymerase subunit beta' 4369435..4373658 Escherichia coli LY180 16981850 YP_008567199.1 CDS thiH NC_022364.1 4373899 4375032 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine biosynthesis protein ThiH complement(4373899..4375032) Escherichia coli LY180 16981851 YP_008567200.1 CDS LY180_20925 NC_022364.1 4375029 4375799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; thiazole synthase complement(4375029..4375799) Escherichia coli LY180 16981852 YP_008567201.1 CDS LY180_20930 NC_022364.1 4375801 4376001 R with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; sulfur carrier protein ThiS complement(4375801..4376001) Escherichia coli LY180 16981853 YP_008567202.1 CDS LY180_20935 NC_022364.1 4375985 4376740 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.; molybdopterin biosynthesis protein MoeB complement(4375985..4376740) Escherichia coli LY180 16981854 YP_008567203.1 CDS LY180_20940 NC_022364.1 4376733 4377368 R catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamine-phosphate pyrophosphorylase complement(4376733..4377368) Escherichia coli LY180 16981855 YP_008567204.1 CDS LY180_20945 NC_022364.1 4377368 4379263 R catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphomethylpyrimidine synthase ThiC complement(4377368..4379263) Escherichia coli LY180 16981856 YP_008567205.1 CDS LY180_20950 NC_022364.1 4379496 4379972 R binds specifically to the major sigma factor sigma 70; active in stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology.; anti-RNA polymerase sigma 70 factor complement(4379496..4379972) Escherichia coli LY180 16981857 YP_008567206.1 CDS nudC NC_022364.1 4380067 4380840 D can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; NADH pyrophosphatase 4380067..4380840 Escherichia coli LY180 16981858 YP_008567207.1 CDS hemE NC_022364.1 4380880 4381944 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; Derived by automated computational analysis using gene prediction method: Protein Homology.; uroporphyrinogen decarboxylase 4380880..4381944 Escherichia coli LY180 16981859 YP_008567208.1 CDS LY180_20965 NC_022364.1 4381954 4382625 D Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; Derived by automated computational analysis using gene prediction method: Protein Homology.; endonuclease VIII 4381954..4382625 Escherichia coli LY180 16981860 YP_008567209.1 CDS LY180_20970 NC_022364.1 4382668 4383258 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4382668..4383258 Escherichia coli LY180 16981861 YP_008567210.1 CDS LY180_20975 NC_022364.1 4383445 4383717 D histone-like DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4383445..4383717 Escherichia coli LY180 16981862 YP_008567211.1 CDS LY180_20980 NC_022364.1 4383724 4384425 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4383724..4384425 Escherichia coli LY180 16981863 YP_008567212.1 CDS zraP NC_022364.1 4384427 4384852 R Derived by automated computational analysis using gene prediction method: Protein Homology.; zinc resistance protein complement(4384427..4384852) Escherichia coli LY180 16981864 YP_008567213.1 CDS LY180_20990 NC_022364.1 4385090 4386466 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein ZraS 4385090..4386466 Escherichia coli LY180 16981865 YP_008567214.1 CDS LY180_20995 NC_022364.1 4386463 4387788 D DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetoacetate metabolism regulatory protein AtoC 4386463..4387788 Escherichia coli LY180 16981866 YP_008567215.1 CDS LY180_21000 NC_022364.1 4387785 4389074 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoribosylamine--glycine ligase complement(4387785..4389074) Escherichia coli LY180 16981867 YP_008567216.1 CDS purH NC_022364.1 4389086 4390675 R involved in de novo purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine biosynthesis protein purH complement(4389086..4390675) Escherichia coli LY180 16981868 YP_008567217.1 CDS LY180_21020 NC_022364.1 4394929 4396635 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; pyruvate decarboxylase 4394929..4396635 Escherichia coli LY180 16981871 YP_008567218.1 CDS adhP NC_022364.1 4396785 4397798 D similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetaldehyde reductase 4396785..4397798 Escherichia coli LY180 16981872 YP_008567219.1 CDS LY180_21030 NC_022364.1 4397852 4399003 D Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase 4397852..4399003 Escherichia coli LY180 16981873 YP_008567220.1 CDS LY180_21035 NC_022364.1 4399525 4399644 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4399525..4399644 Escherichia coli LY180 16981874 YP_008567221.1 CDS LY180_21040 NC_022364.1 4399648 4399743 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4399648..4399743 Escherichia coli LY180 16981875 YP_008567222.1 CDS LY180_21050 NC_022364.1 4401022 4401465 R Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyltransferase complement(4401022..4401465) Escherichia coli LY180 16981877 YP_008567223.1 CDS LY180_21055 NC_022364.1 4401622 4402551 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; homoserine O-succinyltransferase 4401622..4402551 Escherichia coli LY180 16981878 YP_008567224.1 CDS LY180_21060 NC_022364.1 4402820 4404421 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; Derived by automated computational analysis using gene prediction method: Protein Homology.; malate synthase 4402820..4404421 Escherichia coli LY180 16981879 YP_008567225.1 CDS LY180_21065 NC_022364.1 4404451 4405755 D Derived by automated computational analysis using gene prediction method: Protein Homology.; isocitrate lyase 4404451..4405755 Escherichia coli LY180 16981880 YP_008567226.1 CDS aceK NC_022364.1 4405938 4407674 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; Derived by automated computational analysis using gene prediction method: Protein Homology.; bifunctional isocitrate dehydrogenase kinase/phosphatase 4405938..4407674 Escherichia coli LY180 16981881 YP_008567227.1 CDS LY180_21075 NC_022364.1 4407643 4409217 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ankyrin complement(4407643..4409217) Escherichia coli LY180 16981882 YP_008567228.1 CDS LY180_21080 NC_022364.1 4409534 4410358 R regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; IclR family transcriptional regulator complement(4409534..4410358) Escherichia coli LY180 16981883 YP_008567229.1 CDS metH NC_022364.1 4410558 4414241 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; B12-dependent methionine synthase 4410558..4414241 Escherichia coli LY180 16981884 YP_008567230.1 CDS LY180_21090 NC_022364.1 4414461 4416092 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4414461..4416092 Escherichia coli LY180 16981885 YP_008567231.1 CDS LY180_21095 NC_022364.1 4416183 4416872 R peptidase E; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; Derived by automated computational analysis using gene prediction method: Protein Homology.; (alpha)-aspartyl dipeptidase complement(4416183..4416872) Escherichia coli LY180 16981886 YP_008567232.1 CDS LY180_21100 NC_022364.1 4417084 4417956 D catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA pseudouridine synthase F 4417084..4417956 Escherichia coli LY180 16981887 YP_008567233.1 CDS LY180_21105 NC_022364.1 4417957 4418229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4417957..4418229) Escherichia coli LY180 16981888 YP_008567234.1 CDS LY180_21110 NC_022364.1 4418759 4419886 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4418759..4419886 Escherichia coli LY180 16981889 YP_008567235.1 CDS LY180_21115 NC_022364.1 4419892 4420683 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nucleotidyltransferase 4419892..4420683 Escherichia coli LY180 16981890 YP_008567236.1 CDS LY180_21120 NC_022364.1 4420719 4421645 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; zeta toxin; poison-antidote element complement(4420719..4421645) Escherichia coli LY180 16981891 YP_008567237.1 CDS LY180_21125 NC_022364.1 4421790 4423139 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate kinase complement(4421790..4423139) Escherichia coli LY180 16981892 YP_008567238.1 CDS pgi NC_022364.1 4423664 4425313 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: Protein Homology.; glucose-6-phosphate isomerase 4423664..4425313 Escherichia coli LY180 16981893 YP_008567239.1 CDS LY180_21135 NC_022364.1 4425668 4425910 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4425668..4425910 Escherichia coli LY180 16981894 YP_008567240.1 CDS LY180_21140 NC_022364.1 4426024 4426662 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4426024..4426662 Escherichia coli LY180 16981895 YP_008567241.1 CDS LY180_21145 NC_022364.1 4426659 4427396 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4426659..4427396 Escherichia coli LY180 16981896 YP_008567242.1 CDS LY180_21150 NC_022364.1 4427396 4429492 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4427396..4429492 Escherichia coli LY180 16981897 YP_008567243.1 CDS LY180_21155 NC_022364.1 4429539 4429817 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4429539..4429817) Escherichia coli LY180 16981898 YP_008567244.1 CDS LY180_21160 NC_022364.1 4429818 4429961 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4429818..4429961 Escherichia coli LY180 16981899 YP_008567245.1 CDS LY180_21165 NC_022364.1 4430087 4430497 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphate-starvation-inducible protein PsiE 4430087..4430497 Escherichia coli LY180 16981900 YP_008567246.1 CDS xylE NC_022364.1 4430541 4432016 R xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-xylose transporter complement(4430541..4432016) Escherichia coli LY180 16981901 YP_008567247.1 CDS malG NC_022364.1 4432388 4433278 R with MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter permease complement(4432388..4433278) Escherichia coli LY180 16981902 YP_008567248.1 CDS malF NC_022364.1 4433293 4434837 R with MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose transporter membrane protein complement(4433293..4434837) Escherichia coli LY180 16981903 YP_008567249.1 CDS malE NC_022364.1 4434991 4436181 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein complement(4434991..4436181) Escherichia coli LY180 16981904 YP_008567250.1 CDS LY180_21190 NC_022364.1 4436274 4436369 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; sugar ABC transporter complement(4436274..4436369) Escherichia coli LY180 16981905 YP_008567251.1 CDS LY180_21195 NC_022364.1 4436546 4437661 D with malEFG is involved in import of maltose/maltodextrin; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4436546..4437661 Escherichia coli LY180 16981906 YP_008567252.1 CDS lamB NC_022364.1 4437733 4439073 D porin involved in the transport of maltose and maltodextrins; Derived by automated computational analysis using gene prediction method: Protein Homology.; maltoporin 4437733..4439073 Escherichia coli LY180 16981907 YP_008567253.1 CDS LY180_21205 NC_022364.1 4439316 4440236 D Derived by automated computational analysis using gene prediction method: Protein Homology.; maltose operon protein 4439316..4440236 Escherichia coli LY180 16981908 YP_008567254.1 CDS LY180_21210 NC_022364.1 4440465 4440659 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4440465..4440659 Escherichia coli LY180 16981909 YP_008567255.1 CDS LY180_21215 NC_022364.1 4440750 4442045 D in E. coli, some yjbl mutations have been reported as suppressors of dnaG mutations; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4440750..4442045 Escherichia coli LY180 16981910 YP_008567256.1 CDS ubiC NC_022364.1 4442268 4442765 D catalyzes the formation of 4-hydroxybenzoate from chorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.; chorismate pyruvate lyase 4442268..4442765 Escherichia coli LY180 16981911 YP_008567257.1 CDS ubiA NC_022364.1 4442778 4443650 D catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; 4-hydroxybenzoate polyprenyltransferase 4442778..4443650 Escherichia coli LY180 16981912 YP_008567258.1 CDS LY180_21230 NC_022364.1 4443805 4446228 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; glycerol-3-phosphate acyltransferase complement(4443805..4446228) Escherichia coli LY180 16981913 YP_008567259.1 CDS LY180_21235 NC_022364.1 4446399 4446767 D catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; diacylglycerol kinase 4446399..4446767 Escherichia coli LY180 16981914 YP_008567260.1 CDS LY180_21240 NC_022364.1 4446877 4447485 D Represses a number of genes involved in the response to DNA damage; Derived by automated computational analysis using gene prediction method: Protein Homology.; LexA repressor 4446877..4447485 Escherichia coli LY180 16981915 YP_008567261.1 CDS LY180_21245 NC_022364.1 4447558 4448883 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA-damage-inducible protein 4447558..4448883 Escherichia coli LY180 16981916 YP_008567262.1 CDS LY180_21250 NC_022364.1 4448999 4449208 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4448999..4449208 Escherichia coli LY180 16981917 YP_008567263.1 CDS LY180_21255 NC_022364.1 4449250 4449765 R Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4449250..4449765) Escherichia coli LY180 16981918 YP_008567264.1 CDS LY180_21270 NC_022364.1 4451487 4452506 D Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA-dihydrouridine synthase A 4451487..4452506 Escherichia coli LY180 16981919 YP_008567265.1 CDS pspG NC_022364.1 4452640 4452882 D coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; Derived by automated computational analysis using gene prediction method: Protein Homology.; phage-shock protein 4452640..4452882 Escherichia coli LY180 16981920 YP_008567266.1 CDS LY180_21280 NC_022364.1 4453048 4454031 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4453048..4454031) Escherichia coli LY180 16981921 YP_008567267.1 CDS LY180_21285 NC_022364.1 4454114 4455529 D unwinds double stranded DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA helicase 4454114..4455529 Escherichia coli LY180 16981922 YP_008567268.1 CDS alr NC_022364.1 4455582 4456661 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine racemase 4455582..4456661 Escherichia coli LY180 16981923 YP_008567269.1 CDS LY180_21295 NC_022364.1 4456914 4458107 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aromatic amino acid aminotransferase 4456914..4458107 Escherichia coli LY180 16981924 YP_008567270.1 CDS aphA NC_022364.1 4459213 4459926 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphotransferase 4459213..4459926 Escherichia coli LY180 16982297 YP_008567271.1 CDS LY180_21305 NC_022364.1 4460037 4460453 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thiamin phosphate synthase 4460037..4460453 Escherichia coli LY180 16981926 YP_008567272.1 CDS LY180_21310 NC_022364.1 4460457 4460813 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4460457..4460813 Escherichia coli LY180 16981927 YP_008567273.1 CDS LY180_21315 NC_022364.1 4460848 4463670 R Derived by automated computational analysis using gene prediction method: Protein Homology.; excinuclease ABC subunit A complement(4460848..4463670) Escherichia coli LY180 16981928 YP_008567274.1 CDS LY180_21320 NC_022364.1 4463924 4464460 D binds to single stranded DNA and PriA helcase facilitate replication restart; Derived by automated computational analysis using gene prediction method: Protein Homology.; single-stranded DNA-binding protein 4463924..4464460 Escherichia coli LY180 16981929 YP_008567275.1 CDS LY180_21325 NC_022364.1 4464559 4464840 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4464559..4464840) Escherichia coli LY180 16981930 YP_008567276.1 CDS LY180_21330 NC_022364.1 4465270 4466856 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4465270..4466856 Escherichia coli LY180 16981931 YP_008567277.1 CDS LY180_21335 NC_022364.1 4466859 4467182 R regulates genes involved in response to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4466859..4467182) Escherichia coli LY180 16981932 YP_008567278.1 CDS LY180_21340 NC_022364.1 4467268 4467732 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4467268..4467732 Escherichia coli LY180 16981933 YP_008567279.1 CDS LY180_21345 NC_022364.1 4468278 4469627 D Derived by automated computational analysis using gene prediction method: Protein Homology.; permase 4468278..4469627 Escherichia coli LY180 16981934 YP_008567280.1 CDS LY180_21350 NC_022364.1 4469779 4471428 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sodium:proton antiporter 4469779..4471428 Escherichia coli LY180 16981935 YP_008567281.1 CDS LY180_21355 NC_022364.1 4471582 4472874 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4471582..4472874) Escherichia coli LY180 16981936 YP_008567282.1 CDS actP NC_022364.1 4473052 4474701 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; actetate permease complement(4473052..4474701) Escherichia coli LY180 16981937 YP_008567283.1 CDS LY180_21365 NC_022364.1 4474698 4475012 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4474698..4475012) Escherichia coli LY180 16981938 YP_008567284.1 CDS LY180_21370 NC_022364.1 4475212 4477170 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; acetyl-CoA synthetase complement(4475212..4477170) Escherichia coli LY180 16981939 YP_008567285.1 CDS nrfA NC_022364.1 4477563 4478999 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase subunit c552 4477563..4478999 Escherichia coli LY180 16981940 YP_008567286.1 CDS LY180_21380 NC_022364.1 4479044 4479610 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C nitrite reductase pentaheme subunit 4479044..4479610 Escherichia coli LY180 16981941 YP_008567287.1 CDS LY180_21385 NC_022364.1 4479607 4480278 D 4Fe4S subunit; may be involved in the transfer of electrons from quinones to the c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfC 4479607..4480278 Escherichia coli LY180 16981942 YP_008567288.1 CDS LY180_21390 NC_022364.1 4480275 4481231 D membrane protein, may be involved in the transfer of electrons from quinones to c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase subunit NrfD 4480275..4481231 Escherichia coli LY180 16981943 YP_008567289.1 CDS LY180_21395 NC_022364.1 4481311 4482969 D with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme lyase subunit NrfE 4481311..4482969 Escherichia coli LY180 16981944 YP_008567290.1 CDS LY180_21400 NC_022364.1 4482962 4483345 D Derived by automated computational analysis using gene prediction method: Protein Homology.; nitrite reductase subunit F 4482962..4483345 Escherichia coli LY180 16981945 YP_008567291.1 CDS LY180_21405 NC_022364.1 4483342 4483938 D Derived by automated computational analysis using gene prediction method: Protein Homology.; formate-dependent nitrite reductase complex subunit NrfG 4483342..4483938 Escherichia coli LY180 16981946 YP_008567292.1 CDS LY180_21410 NC_022364.1 4484280 4485593 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proton glutamate symport protein 4484280..4485593 Escherichia coli LY180 16981947 YP_008567293.1 CDS LY180_21415 NC_022364.1 4486124 4486813 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4486124..4486813) Escherichia coli LY180 16981948 YP_008567294.1 CDS LY180_21420 NC_022364.1 4486907 4488586 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4486907..4488586) Escherichia coli LY180 16981949 YP_008567295.1 CDS LY180_21425 NC_022364.1 4488635 4489054 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; spermidine/putrescine ABC transporter substrate-binding protein complement(4488635..4489054) Escherichia coli LY180 16981950 YP_008567296.1 CDS LY180_21430 NC_022364.1 4489252 4490718 R part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug RND transporter complement(4489252..4490718) Escherichia coli LY180 16981951 YP_008567297.1 CDS LY180_21435 NC_022364.1 4490715 4492766 R possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(4490715..4492766) Escherichia coli LY180 16981952 YP_008567298.1 CDS LY180_21440 NC_022364.1 4492766 4493797 R with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug resistance protein MdtN complement(4492766..4493797) Escherichia coli LY180 16981953 YP_008567299.1 CDS LY180_21445 NC_022364.1 4493816 4494091 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4493816..4494091) Escherichia coli LY180 16981954 YP_008567300.1 CDS LY180_21450 NC_022364.1 4496211 4497419 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4496211..4497419 Escherichia coli LY180 16982289 YP_008567301.1 CDS LY180_21455 NC_022364.1 4497896 4498825 R Derived by automated computational analysis using gene prediction method: Protein Homology.; D-allose kinase complement(4497896..4498825) Escherichia coli LY180 16981956 YP_008567302.1 CDS LY180_21460 NC_022364.1 4498809 4499504 R Derived by automated computational analysis using gene prediction method: Protein Homology.; allulose-6-phosphate 3-epimerase complement(4498809..4499504) Escherichia coli LY180 16981957 YP_008567303.1 CDS rbsC NC_022364.1 4499515 4500495 R functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose ABC transporter permease complement(4499515..4500495) Escherichia coli LY180 16981958 YP_008567304.1 CDS LY180_21470 NC_022364.1 4500474 4502006 R with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.; D-ribose transporter ATP binding protein complement(4500474..4502006) Escherichia coli LY180 16981959 YP_008567305.1 CDS LY180_21475 NC_022364.1 4502133 4503068 R Derived by automated computational analysis using gene prediction method: Protein Homology.; cytochrome C complement(4502133..4503068) Escherichia coli LY180 16981960 YP_008567306.1 CDS LY180_21480 NC_022364.1 4503127 4504017 R involved in rpiB and als operon repression; Derived by automated computational analysis using gene prediction method: Protein Homology.; RpiR family transcriptional regulator complement(4503127..4504017) Escherichia coli LY180 16981961 YP_008567307.1 CDS LY180_21485 NC_022364.1 4504078 4504182 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4504078..4504182 Escherichia coli LY180 16981962 YP_008567308.1 CDS LY180_21490 NC_022364.1 4504376 4504825 D Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 5-phosphate isomerase 4504376..4504825 Escherichia coli LY180 16981963 YP_008567309.1 CDS LY180_21495 NC_022364.1 4504894 4505223 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4504894..4505223 Escherichia coli LY180 16981964 YP_008567310.1 CDS phnP NC_022364.1 4505370 4506128 R required for the use of phosphonates and phosphite as phosphorus sources; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate metabolism protein PhnP complement(4505370..4506128) Escherichia coli LY180 16981965 YP_008567311.1 CDS LY180_21505 NC_022364.1 4506130 4506564 R PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; Derived by automated computational analysis using gene prediction method: Protein Homology.; aminoalkylphosphonic acid N-acetyltransferase complement(4506130..4506564) Escherichia coli LY180 16981966 YP_008567312.1 CDS LY180_21510 NC_022364.1 4506551 4507108 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ribose 1,5-bisphosphokinase complement(4506551..4507108) Escherichia coli LY180 16981967 YP_008567313.1 CDS LY180_21515 NC_022364.1 4507108 4508244 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate metabolism protein PhnM complement(4507108..4508244) Escherichia coli LY180 16981968 YP_008567314.1 CDS LY180_21520 NC_022364.1 4508241 4508921 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonate ABC transporter ATP-binding protein complement(4508241..4508921) Escherichia coli LY180 16981969 YP_008567315.1 CDS phnK NC_022364.1 4509032 4509790 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; phosphonate C-P lyase complement(4509032..4509790) Escherichia coli LY180 16981970 YP_008567316.1 CDS LY180_21530 NC_022364.1 4509787 4510632 R required for use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-phosphorus lyase complex subunit PhnJ complement(4509787..4510632) Escherichia coli LY180 16981971 YP_008567317.1 CDS LY180_21535 NC_022364.1 4510625 4511689 R required for the use of phosphonate and phosphite; Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon-phosphorus lyase complex subunit PhnI complement(4510625..4511689) Escherichia coli LY180 16981972 YP_008567318.1 CDS phnH NC_022364.1 4511689 4512273 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate C-P lyase system protein PhnH complement(4511689..4512273) Escherichia coli LY180 16981973 YP_008567319.1 CDS LY180_21545 NC_022364.1 4512270 4512722 R Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate C-P lyase system protein PhnG complement(4512270..4512722) Escherichia coli LY180 16981974 YP_008567320.1 CDS LY180_21550 NC_022364.1 4512723 4513448 R may be involved in phosphonate uptake and biodegradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(4512723..4513448) Escherichia coli LY180 16981975 YP_008567321.1 CDS LY180_21560 NC_022364.1 4514362 4515378 R with PhnCE is involved in the transport of phosphonates; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphonate ABC transporter substrate-binding protein complement(4514362..4515378) Escherichia coli LY180 16981977 YP_008567322.1 CDS glnQ NC_022364.1 4515403 4516191 R similar to ATP-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; glutamine ABC transporter ATP-binding protein complement(4515403..4516191) Escherichia coli LY180 16981978 YP_008567323.1 CDS LY180_21570 NC_022364.1 4516324 4516767 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4516324..4516767) Escherichia coli LY180 16981979 YP_008567324.1 CDS LY180_21575 NC_022364.1 4517425 4517838 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4517425..4517838) Escherichia coli LY180 16981980 YP_008567325.1 CDS LY180_21580 NC_022364.1 4518161 4520389 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4518161..4520389 Escherichia coli LY180 16981981 YP_008567326.1 CDS LY180_21585 NC_022364.1 4520386 4521264 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4520386..4521264 Escherichia coli LY180 16981982 YP_008567327.1 CDS LY180_21590 NC_022364.1 4521528 4523030 D Derived by automated computational analysis using gene prediction method: Protein Homology.; proline/glycine betaine transporter 4521528..4523030 Escherichia coli LY180 16981983 YP_008567328.1 CDS LY180_21595 NC_022364.1 4523142 4523231 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4523142..4523231 Escherichia coli LY180 16981984 YP_008567329.1 CDS LY180_21600 NC_022364.1 4523207 4524307 R Derived by automated computational analysis using gene prediction method: Protein Homology.; sensor protein BasS/PmrB complement(4523207..4524307) Escherichia coli LY180 16981985 YP_008567330.1 CDS LY180_21605 NC_022364.1 4524308 4524976 R response regulator in two-component regulatory system with BasS; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4524308..4524976) Escherichia coli LY180 16981986 YP_008567331.1 CDS LY180_21610 NC_022364.1 4524973 4526616 R Derived by automated computational analysis using gene prediction method: Protein Homology.; metal dependent hydrolase complement(4524973..4526616) Escherichia coli LY180 16981987 YP_008567332.1 CDS LY180_21615 NC_022364.1 4526720 4528057 R Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter complement(4526720..4528057) Escherichia coli LY180 16981988 YP_008567333.1 CDS LY180_21620 NC_022364.1 4528194 4528955 R regulates genes involved in arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4528194..4528955) Escherichia coli LY180 16981989 YP_008567334.1 CDS LY180_21625 NC_022364.1 4529280 4531550 R biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine decarboxylase complement(4529280..4531550) Escherichia coli LY180 16981990 YP_008567335.1 CDS LY180_21630 NC_022364.1 4531746 4532654 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4531746..4532654) Escherichia coli LY180 16981991 YP_008567336.1 CDS LY180_21635 NC_022364.1 4532937 4534292 D catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-galactosidase 4532937..4534292 Escherichia coli LY180 16981992 YP_008567337.1 CDS LY180_21640 NC_022364.1 4534395 4535816 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar:sodium symporter 4534395..4535816 Escherichia coli LY180 16981993 YP_008567338.1 CDS LY180_21645 NC_022364.1 4535955 4536584 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4535955..4536584) Escherichia coli LY180 16981994 YP_008567339.1 CDS LY180_21650 NC_022364.1 4536706 4538352 R catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate hydratase complement(4536706..4538352) Escherichia coli LY180 16981995 YP_008567340.1 CDS LY180_21655 NC_022364.1 4538430 4539770 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4538430..4539770) Escherichia coli LY180 16981996 YP_008567341.1 CDS LY180_21660 NC_022364.1 4540341 4541060 R response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4540341..4541060) Escherichia coli LY180 16981997 YP_008567342.1 CDS LY180_21665 NC_022364.1 4541057 4542688 R C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase complement(4541057..4542688) Escherichia coli LY180 16981998 YP_008567343.1 CDS LY180_21670 NC_022364.1 4542869 4543099 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4542869..4543099 Escherichia coli LY180 16981999 YP_008567344.1 CDS LY180_21675 NC_022364.1 4543111 4543383 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4543111..4543383 Escherichia coli LY180 16982000 YP_008567345.1 CDS LY180_21680 NC_022364.1 4543610 4543906 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4543610..4543906 Escherichia coli LY180 16982001 YP_008567346.1 CDS LY180_21685 NC_022364.1 4543934 4544107 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4543934..4544107 Escherichia coli LY180 16982002 YP_008567347.1 CDS lysS NC_022364.1 4544226 4545743 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysyl-tRNA synthetase complement(4544226..4545743) Escherichia coli LY180 16982003 YP_008567348.1 CDS LY180_21695 NC_022364.1 4545980 4547437 R Derived by automated computational analysis using gene prediction method: Protein Homology.; peptide permease complement(4545980..4547437) Escherichia coli LY180 16982004 YP_008567349.1 CDS LY180_21700 NC_022364.1 4547496 4549643 R constitutive; catalyzes the formation of cadaverine from lysine; Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine decarboxylase CadA complement(4547496..4549643) Escherichia coli LY180 16982005 YP_008567350.1 CDS cadB NC_022364.1 4549723 4551057 R antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; arginine:agmatine antiporter complement(4549723..4551057) Escherichia coli LY180 16982006 YP_008567351.1 CDS LY180_21710 NC_022364.1 4551422 4552960 R regulates the cadBA operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4551422..4552960) Escherichia coli LY180 16982007 YP_008567352.1 CDS LY180_21715 NC_022364.1 4553247 4553465 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4553247..4553465 Escherichia coli LY180 16982008 YP_008567353.1 CDS LY180_21725 NC_022364.1 4553759 4554334 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4553759..4554334) Escherichia coli LY180 16982010 YP_008567354.1 CDS dipZ NC_022364.1 4554371 4556068 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology.; thiol:disulfide interchange protein complement(4554371..4556068) Escherichia coli LY180 16982011 YP_008567355.1 CDS LY180_21735 NC_022364.1 4556044 4556382 R copper binding protein required for copper tolerance; involved in resistance toward heavy metals; Derived by automated computational analysis using gene prediction method: Protein Homology.; divalent ion tolerance protein CutA complement(4556044..4556382) Escherichia coli LY180 16982012 YP_008567356.1 CDS LY180_21740 NC_022364.1 4556498 4557799 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; Derived by automated computational analysis using gene prediction method: Protein Homology.; C4-dicarboxylate ABC transporter complement(4556498..4557799) Escherichia coli LY180 16982013 YP_008567357.1 CDS aspA NC_022364.1 4557917 4559353 R catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate ammonia-lyase complement(4557917..4559353) Escherichia coli LY180 16982014 YP_008567358.1 CDS fxsA NC_022364.1 4559690 4560166 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; exclusion suppressor FxsA 4559690..4560166 Escherichia coli LY180 16982015 YP_008567359.1 CDS LY180_21755 NC_022364.1 4560182 4561438 R uncharacterized member of the APC superfamily of amino acid transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transporter complement(4560182..4561438) Escherichia coli LY180 16982016 YP_008567360.1 CDS groES NC_022364.1 4561714 4562007 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; Derived by automated computational analysis using gene prediction method: Protein Homology.; co-chaperonin GroES 4561714..4562007 Escherichia coli LY180 16982017 YP_008567361.1 CDS groEL NC_022364.1 4562051 4563697 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone GroEL 4562051..4563697 Escherichia coli LY180 16982018 YP_008567362.1 CDS LY180_21770 NC_022364.1 4563835 4564188 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4563835..4564188 Escherichia coli LY180 16982019 YP_008567363.1 CDS LY180_21775 NC_022364.1 4564391 4565260 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4564391..4565260) Escherichia coli LY180 16982020 YP_008567364.1 CDS LY180_21780 NC_022364.1 4565714 4566742 R Derived by automated computational analysis using gene prediction method: Protein Homology.; lysine 2,3-aminomutase complement(4565714..4566742) Escherichia coli LY180 16982021 YP_008567365.1 CDS LY180_21785 NC_022364.1 4566784 4567350 D Derived by automated computational analysis using gene prediction method: Protein Homology.; elongation factor P 4566784..4567350 Escherichia coli LY180 16982022 YP_008567366.1 CDS LY180_21790 NC_022364.1 4567402 4567527 D Derived by automated computational analysis using gene prediction method: Protein Homology.; entericidin B membrane lipoprotein 4567402..4567527 Escherichia coli LY180 16982023 YP_008567367.1 CDS LY180_21795 NC_022364.1 4567638 4567784 D Derived by automated computational analysis using gene prediction method: Protein Homology.; entericidin B membrane lipoprotein 4567638..4567784 Escherichia coli LY180 16982024 YP_008567368.1 CDS LY180_21800 NC_022364.1 4567960 4568277 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4567960..4568277 Escherichia coli LY180 16982025 YP_008567369.1 CDS LY180_21805 NC_022364.1 4568274 4568807 R lipocalin; globomycin-sensitive outer membrane lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.; outer membrane lipoprotein Blc complement(4568274..4568807) Escherichia coli LY180 16982026 YP_008567370.1 CDS LY180_21810 NC_022364.1 4568896 4570029 R Derived by automated computational analysis using gene prediction method: Protein Homology.; beta-lactamase complement(4568896..4570029) Escherichia coli LY180 16982027 YP_008567371.1 CDS LY180_21815 NC_022364.1 4570092 4570451 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit D complement(4570092..4570451) Escherichia coli LY180 16982028 YP_008567372.1 CDS LY180_21820 NC_022364.1 4570462 4570779 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase subunit C complement(4570462..4570779) Escherichia coli LY180 16982029 YP_008567373.1 CDS LY180_21825 NC_022364.1 4571147 4572133 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; endoglucanase complement(4571147..4572133) Escherichia coli LY180 16982030 YP_008567374.1 CDS LY180_21830 NC_022364.1 4572422 4574230 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; Derived by automated computational analysis using gene prediction method: Protein Homology.; fumarate reductase flavoprotein subunit complement(4572422..4574230) Escherichia coli LY180 16982031 YP_008567375.1 CDS LY180_21835 NC_022364.1 4574555 4575532 D poxA; regulates pyruvate oxidase poxB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; lysyl-tRNA synthetase 4574555..4575532 Escherichia coli LY180 16982032 YP_008567376.1 CDS LY180_21840 NC_022364.1 4575751 4577253 D Derived by automated computational analysis using gene prediction method: Protein Homology.; amino acid ABC transporter permease 4575751..4577253 Escherichia coli LY180 16982033 YP_008567377.1 CDS LY180_21845 NC_022364.1 4577305 4577619 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4577305..4577619 Escherichia coli LY180 16982034 YP_008567378.1 CDS LY180_21850 NC_022364.1 4577616 4577930 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4577616..4577930 Escherichia coli LY180 16982035 YP_008567379.1 CDS LY180_21855 NC_022364.1 4577959 4581282 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mechanosensitive channel protein complement(4577959..4581282) Escherichia coli LY180 16982036 YP_008567380.1 CDS psd NC_022364.1 4581304 4582272 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphatidylserine decarboxylase complement(4581304..4582272) Escherichia coli LY180 16982037 YP_008567381.1 CDS LY180_21865 NC_022364.1 4582369 4583421 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase RsgA complement(4582369..4583421) Escherichia coli LY180 16982038 YP_008567382.1 CDS LY180_21870 NC_022364.1 4583516 4584061 D 3'-5' exoribonuclease specific for small oligoribonuclotides; Derived by automated computational analysis using gene prediction method: Protein Homology.; oligoribonuclease 4583516..4584061 Escherichia coli LY180 16982039 YP_008567383.1 CDS LY180_21890 NC_022364.1 4584840 4585979 R Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster binding protein complement(4584840..4585979) Escherichia coli LY180 16982043 YP_008567384.1 CDS LY180_21895 NC_022364.1 4585978 4587525 D Derived by automated computational analysis using gene prediction method: Protein Homology.; carbohydrate kinase 4585978..4587525 Escherichia coli LY180 16982044 YP_008567385.1 CDS LY180_21900 NC_022364.1 4587497 4587958 D needed for nucleoid integrity; possibly involved in cell wall synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; ADP-binding protein 4587497..4587958 Escherichia coli LY180 16982045 YP_008567386.1 CDS LY180_21905 NC_022364.1 4587977 4589314 D Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylmuramoyl-L-alanine amidase 4587977..4589314 Escherichia coli LY180 16982046 YP_008567387.1 CDS LY180_21910 NC_022364.1 4589324 4591171 D Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA mismatch repair protein 4589324..4591171 Escherichia coli LY180 16982047 YP_008567388.1 CDS miaA NC_022364.1 4591164 4592114 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; Derived by automated computational analysis using gene prediction method: Protein Homology.; tRNA delta(2)-isopentenylpyrophosphate transferase 4591164..4592114 Escherichia coli LY180 16982048 YP_008567389.1 CDS hfq NC_022364.1 4592200 4592508 D HF-I, host factor for RNA phage Q beta replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; RNA-binding protein Hfq 4592200..4592508 Escherichia coli LY180 16982049 YP_008567390.1 CDS LY180_21925 NC_022364.1 4592584 4593864 D involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; Derived by automated computational analysis using gene prediction method: Protein Homology.; GTPase HflX 4592584..4593864 Escherichia coli LY180 16982050 YP_008567391.1 CDS LY180_21930 NC_022364.1 4593950 4595209 D with HflC inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4593950..4595209 Escherichia coli LY180 16982051 YP_008567392.1 CDS LY180_21935 NC_022364.1 4595212 4596216 D with HflK inhibits proteolysis of lambda cII protein by FtsH; Derived by automated computational analysis using gene prediction method: Protein Homology.; cell division protein FtsH 4595212..4596216 Escherichia coli LY180 16982052 YP_008567393.1 CDS LY180_21940 NC_022364.1 4596298 4596495 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4596298..4596495 Escherichia coli LY180 16982053 YP_008567394.1 CDS LY180_21945 NC_022364.1 4596599 4597897 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.; adenylosuccinate synthetase 4596599..4597897 Escherichia coli LY180 16982054 YP_008567395.1 CDS LY180_21950 NC_022364.1 4598102 4598527 D negatively regulates the transcription of genes upregulated by nitrosative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4598102..4598527 Escherichia coli LY180 16982055 YP_008567396.1 CDS LY180_21955 NC_022364.1 4598566 4601007 D 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.; exoribonuclease R 4598566..4601007 Escherichia coli LY180 16982056 YP_008567397.1 CDS LY180_21965 NC_022364.1 4601187 4601918 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; 23S rRNA (guanosine-2'-O-)-methyltransferase 4601187..4601918 Escherichia coli LY180 16982058 YP_008567398.1 CDS LY180_21970 NC_022364.1 4602045 4602446 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4602045..4602446 Escherichia coli LY180 16982059 YP_008567399.1 CDS LY180_21975 NC_022364.1 4602465 4603163 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4602465..4603163 Escherichia coli LY180 16982060 YP_008567400.1 CDS LY180_21980 NC_022364.1 4603214 4603873 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4603214..4603873 Escherichia coli LY180 16982061 YP_008567401.1 CDS LY180_21985 NC_022364.1 4603891 4604289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4603891..4604289 Escherichia coli LY180 16982062 YP_008567402.1 CDS LY180_21990 NC_022364.1 4604299 4604937 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4604299..4604937 Escherichia coli LY180 16982063 YP_008567403.1 CDS LY180_21995 NC_022364.1 4604961 4606103 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4604961..4606103 Escherichia coli LY180 16982064 YP_008567404.1 CDS LY180_22000 NC_022364.1 4606187 4607812 D catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.; isovaleryl CoA dehydrogenase 4606187..4607812 Escherichia coli LY180 16982065 YP_008567405.1 CDS LY180_22005 NC_022364.1 4607929 4608204 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4607929..4608204) Escherichia coli LY180 16982066 YP_008567406.1 CDS LY180_22010 NC_022364.1 4608353 4608682 R in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; Derived by automated computational analysis using gene prediction method: Protein Homology.; biofilm stress and motility protein A complement(4608353..4608682) Escherichia coli LY180 16982067 YP_008567407.1 CDS LY180_22015 NC_022364.1 4608864 4609613 D YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; Derived by automated computational analysis using gene prediction method: Protein Homology.; esterase 4608864..4609613 Escherichia coli LY180 16982068 YP_008567408.1 CDS LY180_22020 NC_022364.1 4609610 4610365 R negative regulator of ulaG and ulaABCDEF; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4609610..4610365) Escherichia coli LY180 16982069 YP_008567409.1 CDS LY180_22025 NC_022364.1 4610473 4611537 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ascorbate 6-phosphate lactonase complement(4610473..4611537) Escherichia coli LY180 16982070 YP_008567410.1 CDS LY180_22030 NC_022364.1 4611892 4613289 D Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIC 4611892..4613289 Escherichia coli LY180 16982071 YP_008567411.1 CDS LY180_22040 NC_022364.1 4613620 4614084 D involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS ascorbate transporter subunit IIA 4613620..4614084 Escherichia coli LY180 16982073 YP_008567412.1 CDS ulaD NC_022364.1 4614098 4614748 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3-keto-L-gulonate-6-phosphate decarboxylase 4614098..4614748 Escherichia coli LY180 16982074 YP_008567413.1 CDS LY180_22050 NC_022364.1 4614758 4615612 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-xylulose 5-phosphate 3-epimerase 4614758..4615612 Escherichia coli LY180 16982075 YP_008567414.1 CDS sgaE NC_022364.1 4615612 4616298 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-ribulose-5-phosphate 4-epimerase 4615612..4616298 Escherichia coli LY180 16982076 YP_008567415.1 CDS LY180_22060 NC_022364.1 4616393 4616944 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4616393..4616944 Escherichia coli LY180 16982077 YP_008567416.1 CDS LY180_22065 NC_022364.1 4617019 4617294 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4617019..4617294) Escherichia coli LY180 16982078 YP_008567417.1 CDS rpsF NC_022364.1 4617621 4618016 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S6 4617621..4618016 Escherichia coli LY180 16982079 YP_008567418.1 CDS LY180_22075 NC_022364.1 4618170 4618337 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; primosomal replication protein N 4618170..4618337 Escherichia coli LY180 16982080 YP_008567419.1 CDS rpsR NC_022364.1 4618342 4618569 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 30S ribosomal protein S18 4618342..4618569 Escherichia coli LY180 16982081 YP_008567420.1 CDS rplI NC_022364.1 4618611 4619060 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.; 50S ribosomal protein L9 4618611..4619060 Escherichia coli LY180 16982082 YP_008567421.1 CDS LY180_22090 NC_022364.1 4619131 4619925 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4619131..4619925) Escherichia coli LY180 16982083 YP_008567422.1 CDS LY180_22095 NC_022364.1 4620365 4620916 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase TnA complement(4620365..4620916) Escherichia coli LY180 16982084 YP_008567423.1 CDS LY180_22100 NC_022364.1 4620929 4622194 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase IS609 4620929..4622194 Escherichia coli LY180 16982085 YP_008567424.1 CDS LY180_22105 NC_022364.1 4622329 4622967 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4622329..4622967) Escherichia coli LY180 16982086 YP_008567425.1 CDS LY180_22110 NC_022364.1 4623185 4623805 D FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidyl-prolyl cis-trans isomerase 4623185..4623805 Escherichia coli LY180 16982087 YP_008567426.1 CDS LY180_22115 NC_022364.1 4624114 4625526 D involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine glycine permease 4624114..4625526 Escherichia coli LY180 16982088 YP_008567427.1 CDS LY180_22120 NC_022364.1 4625571 4626233 R Involved in anaerobic NO protection and iron metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.; iron-sulfur cluster repair di-iron protein complement(4625571..4626233) Escherichia coli LY180 16982089 YP_008567428.1 CDS LY180_22125 NC_022364.1 4626341 4627306 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4626341..4627306) Escherichia coli LY180 16982090 YP_008567429.1 CDS LY180_22130 NC_022364.1 4627415 4628275 R Derived by automated computational analysis using gene prediction method: Protein Homology.; quinone oxidoreductase complement(4627415..4628275) Escherichia coli LY180 16982091 YP_008567430.1 CDS LY180_22135 NC_022364.1 4628364 4628744 D Derived by automated computational analysis using gene prediction method: Protein Homology.; HxlR family transcriptional regulator 4628364..4628744 Escherichia coli LY180 16982092 YP_008567431.1 CDS cpdB NC_022364.1 4628873 4630816 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-nucleotidase complement(4628873..4630816) Escherichia coli LY180 16982093 YP_008567432.1 CDS LY180_22145 NC_022364.1 4631006 4631746 D catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; 3'-5'-bisphosphate nucleotidase 4631006..4631746 Escherichia coli LY180 16982094 YP_008567433.1 CDS LY180_22150 NC_022364.1 4631736 4632293 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4631736..4632293) Escherichia coli LY180 16982095 YP_008567434.1 CDS LY180_22155 NC_022364.1 4632618 4632824 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4632618..4632824 Escherichia coli LY180 16982096 YP_008567435.1 CDS LY180_22160 NC_022364.1 4632886 4634229 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4632886..4634229) Escherichia coli LY180 16982097 YP_008567436.1 CDS LY180_22165 NC_022364.1 4634552 4635190 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.; methionine sulfoxide reductase A complement(4634552..4635190) Escherichia coli LY180 16982098 YP_008567437.1 CDS LY180_22170 NC_022364.1 4635396 4637129 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4635396..4637129 Escherichia coli LY180 16982099 YP_008567438.1 CDS LY180_22175 NC_022364.1 4637126 4640905 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4637126..4640905 Escherichia coli LY180 16982100 YP_008567439.1 CDS LY180_22180 NC_022364.1 4640908 4641249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-glutamylcyclotransferase 4640908..4641249 Escherichia coli LY180 16982101 YP_008567440.1 CDS LY180_22190 NC_022364.1 4641462 4641713 D part of the toxin-antitoxin ChpB-ChpS system; Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 4641462..4641713 Escherichia coli LY180 16982102 YP_008567441.1 CDS LY180_22195 NC_022364.1 4641707 4642057 D toxin of the ChpB-ChpS toxin-antitoxin system; Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin B 4641707..4642057 Escherichia coli LY180 16982103 YP_008567442.1 CDS LY180_22200 NC_022364.1 4642137 4642667 R catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; inorganic pyrophosphatase complement(4642137..4642667) Escherichia coli LY180 16982104 YP_008567443.1 CDS LY180_22205 NC_022364.1 4642977 4643933 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter substrate-binding protein 4642977..4643933 Escherichia coli LY180 16982105 YP_008567444.1 CDS LY180_22210 NC_022364.1 4644073 4645575 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter ATP-binding protein 4644073..4645575 Escherichia coli LY180 16982106 YP_008567445.1 CDS LY180_22215 NC_022364.1 4645589 4646611 D Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 4645589..4646611 Escherichia coli LY180 16982107 YP_008567446.1 CDS LY180_22220 NC_022364.1 4646598 4647593 D membrane component of a putative sugar ABC transporter system; Derived by automated computational analysis using gene prediction method: Protein Homology.; sugar ABC transporter permease 4646598..4647593 Escherichia coli LY180 16982108 YP_008567447.1 CDS LY180_22225 NC_022364.1 4647626 4648624 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; fructose-1,6-bisphosphatase complement(4647626..4648624) Escherichia coli LY180 16982109 YP_008567448.1 CDS LY180_22230 NC_022364.1 4648800 4650173 D ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4648800..4650173 Escherichia coli LY180 16982110 YP_008567449.1 CDS LY180_22235 NC_022364.1 4650329 4650880 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4650329..4650880) Escherichia coli LY180 16982111 YP_008567450.1 CDS pmbA NC_022364.1 4650974 4652326 D protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; Derived by automated computational analysis using gene prediction method: Protein Homology.; peptidase PmbA 4650974..4652326 Escherichia coli LY180 16982112 YP_008567451.1 CDS LY180_22245 NC_022364.1 4652509 4652895 D electron transport protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; cytochrome B562 4652509..4652895 Escherichia coli LY180 16982113 YP_008567452.1 CDS LY180_22250 NC_022364.1 4652940 4653404 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; Derived by automated computational analysis using gene prediction method: Protein Homology.; anaerobic ribonucleotide reductase-activating protein complement(4652940..4653404) Escherichia coli LY180 16982114 YP_008567453.1 CDS LY180_22255 NC_022364.1 4653562 4655700 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; Derived by automated computational analysis using gene prediction method: Protein Homology.; ribonucleoside triphosphate reductase complement(4653562..4655700) Escherichia coli LY180 16982115 YP_008567454.1 CDS LY180_22260 NC_022364.1 4656094 4657749 R Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose-6-phosphate hydrolase complement(4656094..4657749) Escherichia coli LY180 16982116 YP_008567455.1 CDS LY180_22265 NC_022364.1 4657799 4659217 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.; PTS maltose transporter subunit IIBC complement(4657799..4659217) Escherichia coli LY180 16982117 YP_008567456.1 CDS treR NC_022364.1 4659339 4660286 R regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; Derived by automated computational analysis using gene prediction method: Protein Homology.; trehalose repressor complement(4659339..4660286) Escherichia coli LY180 16982118 YP_008567457.1 CDS LY180_22275 NC_022364.1 4660665 4663361 D P-type ATPase involved in magnesium influx; Derived by automated computational analysis using gene prediction method: Protein Homology.; magnesium-transporting ATPase 4660665..4663361 Escherichia coli LY180 16982119 YP_008567458.1 CDS LY180_22280 NC_022364.1 4663442 4663543 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4663442..4663543) Escherichia coli LY180 16982120 YP_008567459.1 CDS LY180_22285 NC_022364.1 4663567 4663953 R has endoribonuclease activity on mRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.; endoribonuclease L-PSP complement(4663567..4663953) Escherichia coli LY180 16982121 YP_008567460.1 CDS LY180_22290 NC_022364.1 4664026 4664487 R involved in the allosteric regulation of aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase regulatory subunit complement(4664026..4664487) Escherichia coli LY180 16982122 YP_008567461.1 CDS LY180_22295 NC_022364.1 4664500 4665435 R Derived by automated computational analysis using gene prediction method: Protein Homology.; aspartate carbamoyltransferase catalytic subunit complement(4664500..4665435) Escherichia coli LY180 16982123 YP_008567462.1 CDS LY180_22300 NC_022364.1 4665854 4666249 R Derived by automated computational analysis using gene prediction method: Protein Homology.; mRNA endoribonuclease complement(4665854..4666249) Escherichia coli LY180 16982124 YP_008567463.1 CDS LY180_22305 NC_022364.1 4666380 4667093 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(4666380..4667093) Escherichia coli LY180 16982125 YP_008567464.1 CDS LY180_22310 NC_022364.1 4667164 4667757 D Derived by automated computational analysis using gene prediction method: Protein Homology.; TetR family transcriptional regulator 4667164..4667757 Escherichia coli LY180 16982126 YP_008567465.1 CDS LY180_22315 NC_022364.1 4667757 4667885 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4667757..4667885 Escherichia coli LY180 16982127 YP_008567466.1 CDS LY180_22320 NC_022364.1 4667902 4668354 D Derived by automated computational analysis using gene prediction method: Protein Homology.; Toxin-antitoxin biofilm protein TabA 4667902..4668354 Escherichia coli LY180 16982128 YP_008567467.1 CDS LY180_22325 NC_022364.1 4668477 4669451 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA-binding protein 4668477..4669451 Escherichia coli LY180 16982129 YP_008567468.1 CDS LY180_22330 NC_022364.1 4669807 4670037 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4669807..4670037 Escherichia coli LY180 16982130 YP_008567469.1 CDS LY180_22335 NC_022364.1 4670138 4671142 R catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.; ornithine carbamoyltransferase complement(4670138..4671142) Escherichia coli LY180 16982131 YP_008567470.1 CDS LY180_22340 NC_022364.1 4671304 4671720 D Derived by automated computational analysis using gene prediction method: Protein Homology.; RNase E inhibitor protein 4671304..4671720 Escherichia coli LY180 16982132 YP_008567471.1 CDS LY180_22345 NC_022364.1 4671766 4672269 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetyltransferase complement(4671766..4672269) Escherichia coli LY180 16982133 YP_008567472.1 CDS LY180_22350 NC_022364.1 4672462 4673658 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4672462..4673658 Escherichia coli LY180 16982134 YP_008567473.1 CDS LY180_22355 NC_022364.1 4673714 4676569 R Derived by automated computational analysis using gene prediction method: Protein Homology.; valyl-tRNA synthase complement(4673714..4676569) Escherichia coli LY180 16982135 YP_008567474.1 CDS LY180_22360 NC_022364.1 4676569 4677012 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit chi complement(4676569..4677012) Escherichia coli LY180 16982136 YP_008567475.1 CDS LY180_22365 NC_022364.1 4677146 4678657 R catalyzes the removal of N-terminal amino acids preferably from various peptides; a cyteinylglycinase, transcription regulator and site-specific recombination factor; Derived by automated computational analysis using gene prediction method: Protein Homology.; multifunctional aminopeptidase A complement(4677146..4678657) Escherichia coli LY180 16982137 YP_008567476.1 CDS LY180_22370 NC_022364.1 4678924 4680024 D with LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease LptF 4678924..4680024 Escherichia coli LY180 16982138 YP_008567477.1 CDS LY180_22375 NC_022364.1 4680024 4681106 D with LptABCF is involved in the transport of lipopolysaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipopolysaccharide ABC transporter permease 4680024..4681106 Escherichia coli LY180 16982139 YP_008567478.1 CDS LY180_22380 NC_022364.1 4681225 4682727 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4681225..4682727) Escherichia coli LY180 16982140 YP_008567479.1 CDS LY180_22385 NC_022364.1 4682805 4683803 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4682805..4683803) Escherichia coli LY180 16982141 YP_008567480.1 CDS LY180_22390 NC_022364.1 4683870 4685189 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT complement(4683870..4685189) Escherichia coli LY180 16982142 YP_008567481.1 CDS LY180_22395 NC_022364.1 4685254 4686018 R Derived by automated computational analysis using gene prediction method: Protein Homology.; oxidoreductase complement(4685254..4686018) Escherichia coli LY180 16982143 YP_008567482.1 CDS LY180_22400 NC_022364.1 4686042 4687073 R NAD-binding; Derived by automated computational analysis using gene prediction method: Protein Homology.; L-idonate 5-dehydrogenase complement(4686042..4687073) Escherichia coli LY180 16982144 YP_008567483.1 CDS gntK NC_022364.1 4687290 4687853 D thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.; gluconate kinase 1 4687290..4687853 Escherichia coli LY180 16982145 YP_008567484.1 CDS LY180_22410 NC_022364.1 4687857 4688876 R Derived by automated computational analysis using gene prediction method: Protein Homology.; alcohol dehydrogenase complement(4687857..4688876) Escherichia coli LY180 16982146 YP_008567485.1 CDS LY180_22420 NC_022364.1 4689357 4690625 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 4689357..4690625 Escherichia coli LY180 16982148 YP_008567486.1 CDS LY180_22425 NC_022364.1 4690841 4691716 D Derived by automated computational analysis using gene prediction method: Protein Homology.; restriction endonuclease 4690841..4691716 Escherichia coli LY180 16982149 YP_008567487.1 CDS LY180_22430 NC_022364.1 4691794 4692759 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5'-nucleotidase complement(4691794..4692759) Escherichia coli LY180 16982150 YP_008567488.1 CDS LY180_22435 NC_022364.1 4692901 4693167 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; helicase complement(4692901..4693167) Escherichia coli LY180 16982151 YP_008567489.1 CDS LY180_22440 NC_022364.1 4693160 4694908 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4693160..4694908) Escherichia coli LY180 16982152 YP_008567490.1 CDS LY180_22445 NC_022364.1 4695103 4696170 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(4695103..4696170) Escherichia coli LY180 16982153 YP_008567491.1 CDS LY180_22450 NC_022364.1 4696278 4697912 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DNA methyltransferase complement(4696278..4697912) Escherichia coli LY180 16982154 YP_008567492.1 CDS LY180_22455 NC_022364.1 4697976 4701389 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; DEAD/DEAH box helicase complement(4697976..4701389) Escherichia coli LY180 16982155 YP_008567493.1 CDS LY180_22460 NC_022364.1 4701833 4701967 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4701833..4701967) Escherichia coli LY180 16982156 YP_008567494.1 CDS LY180_22465 NC_022364.1 4701966 4702649 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4701966..4702649 Escherichia coli LY180 16982157 YP_008567495.1 CDS LY180_22470 NC_022364.1 4702688 4703701 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4702688..4703701 Escherichia coli LY180 16982158 YP_008567496.1 CDS LY180_22475 NC_022364.1 4703714 4704478 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4703714..4704478 Escherichia coli LY180 16982159 YP_008567497.1 CDS LY180_22480 NC_022364.1 4704699 4704917 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Rha family transcriptional regulator complement(4704699..4704917) Escherichia coli LY180 16982160 YP_008567498.1 CDS LY180_22485 NC_022364.1 4705035 4705649 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; malate transporter complement(4705035..4705649) Escherichia coli LY180 16982161 YP_008567499.1 CDS LY180_22490 NC_022364.1 4706242 4707195 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4706242..4707195 Escherichia coli LY180 16982162 YP_008567500.1 CDS LY180_22495 NC_022364.1 4707431 4708249 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4707431..4708249 Escherichia coli LY180 16982163 YP_008567501.1 CDS LY180_22500 NC_022364.1 4708279 4708752 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4708279..4708752 Escherichia coli LY180 16982164 YP_008567502.1 CDS LY180_22505 NC_022364.1 4708752 4709087 D Derived by automated computational analysis using gene prediction method: Protein Homology.; antitoxin 4708752..4709087 Escherichia coli LY180 16982165 YP_008567503.1 CDS LY180_22510 NC_022364.1 4709118 4709459 D Derived by automated computational analysis using gene prediction method: Protein Homology.; toxin 4709118..4709459 Escherichia coli LY180 16982166 YP_008567504.1 CDS LY180_22515 NC_022364.1 4709574 4710407 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction methylase 4709574..4710407 Escherichia coli LY180 16982167 YP_008567505.1 CDS LY180_22520 NC_022364.1 4710477 4710872 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; S-adenosylhomocysteine hydrolase 4710477..4710872 Escherichia coli LY180 16982168 YP_008567506.1 CDS LY180_22525 NC_022364.1 4710865 4711812 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4710865..4711812 Escherichia coli LY180 16982169 YP_008567507.1 CDS LY180_22530 NC_022364.1 4712205 4713470 D Derived by automated computational analysis using gene prediction method: Protein Homology.; integrase 4712205..4713470 Escherichia coli LY180 16982170 YP_008567508.1 CDS LY180_22535 NC_022364.1 4713671 4715140 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; protein kinase complement(4713671..4715140) Escherichia coli LY180 16982171 YP_008567509.1 CDS LY180_22540 NC_022364.1 4715137 4715679 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4715137..4715679) Escherichia coli LY180 16982172 YP_008567510.1 CDS LY180_22545 NC_022364.1 4715687 4717372 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; nucleoside triphosphate hydrolase complement(4715687..4717372) Escherichia coli LY180 16982173 YP_008567511.1 CDS LY180_22550 NC_022364.1 4717362 4718519 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4717362..4718519) Escherichia coli LY180 16982174 YP_008567512.1 CDS LY180_22555 NC_022364.1 4718522 4719370 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4718522..4719370) Escherichia coli LY180 16982175 YP_008567513.1 CDS LY180_22560 NC_022364.1 4719381 4723667 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4719381..4723667) Escherichia coli LY180 16982176 YP_008567514.1 CDS LY180_22565 NC_022364.1 4723664 4724950 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein complement(4723664..4724950) Escherichia coli LY180 16982177 YP_008567515.1 CDS LY180_22570 NC_022364.1 4724968 4726494 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(4724968..4726494) Escherichia coli LY180 16982178 YP_008567516.1 CDS LY180_22575 NC_022364.1 4726494 4727987 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4726494..4727987) Escherichia coli LY180 16982179 YP_008567517.1 CDS LY180_22580 NC_022364.1 4728078 4728641 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4728078..4728641) Escherichia coli LY180 16982180 YP_008567518.1 CDS LY180_22585 NC_022364.1 4728692 4729078 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4728692..4729078) Escherichia coli LY180 16982181 YP_008567519.1 CDS LY180_22590 NC_022364.1 4729075 4730418 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(4729075..4730418) Escherichia coli LY180 16982182 YP_008567520.1 CDS LY180_22595 NC_022364.1 4730411 4732486 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; restriction endonuclease complement(4730411..4732486) Escherichia coli LY180 16982183 YP_008567521.1 CDS LY180_22600 NC_022364.1 4732656 4733528 R Derived by automated computational analysis using gene prediction method: Protein Homology.; restriction endonuclease complement(4732656..4733528) Escherichia coli LY180 16982184 YP_008567522.1 CDS LY180_22605 NC_022364.1 4733740 4734720 R Derived by automated computational analysis using gene prediction method: Protein Homology.; 9-O-acetyl-N-acetylneuraminic acid deacetylase complement(4733740..4734720) Escherichia coli LY180 16982185 YP_008567523.1 CDS LY180_22610 NC_022364.1 4734785 4735891 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid mutarotase complement(4734785..4735891) Escherichia coli LY180 16982186 YP_008567524.1 CDS LY180_22615 NC_022364.1 4735911 4736627 R Derived by automated computational analysis using gene prediction method: Protein Homology.; N-acetylneuraminic acid channel protein complement(4735911..4736627) Escherichia coli LY180 16982187 YP_008567525.1 CDS LY180_22620 NC_022364.1 4738083 4738685 D inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase 4738083..4738685 Escherichia coli LY180 16982188 YP_008567526.1 CDS LY180_22625 NC_022364.1 4739163 4739759 D inversion of on/off regulator of fimA; Derived by automated computational analysis using gene prediction method: Protein Homology.; tyrosine recombinase 4739163..4739759 Escherichia coli LY180 16982189 YP_008567527.1 CDS fimA NC_022364.1 4740239 4740787 D Derived by automated computational analysis using gene prediction method: Protein Homology.; type-1 fimbrial protein subunit A 4740239..4740787 Escherichia coli LY180 16982190 YP_008567528.1 CDS LY180_22635 NC_022364.1 4740852 4741391 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrin fimI 4740852..4741391 Escherichia coli LY180 16982191 YP_008567529.1 CDS LY180_22640 NC_022364.1 4741428 4742153 D Derived by automated computational analysis using gene prediction method: Protein Homology.; molecular chaperone FimC 4741428..4742153 Escherichia coli LY180 16982192 YP_008567530.1 CDS LY180_22645 NC_022364.1 4742220 4744856 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimD 4742220..4744856 Escherichia coli LY180 16982193 YP_008567531.1 CDS LY180_22650 NC_022364.1 4744866 4745396 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimF 4744866..4745396 Escherichia coli LY180 16982194 YP_008567532.1 CDS LY180_22655 NC_022364.1 4745409 4745912 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimG 4745409..4745912 Escherichia coli LY180 16982195 YP_008567533.1 CDS LY180_22660 NC_022364.1 4745932 4746834 D Derived by automated computational analysis using gene prediction method: Protein Homology.; fimbrial protein FimH 4745932..4746834 Escherichia coli LY180 16982196 YP_008567534.1 CDS LY180_22665 NC_022364.1 4747077 4748420 R Derived by automated computational analysis using gene prediction method: Protein Homology.; Gnt-II system L-idonate transporter IdnT complement(4747077..4748420) Escherichia coli LY180 16982197 YP_008567535.1 CDS LY180_22670 NC_022364.1 4748760 4749944 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; Derived by automated computational analysis using gene prediction method: Protein Homology.; mannonate dehydratase 4748760..4749944 Escherichia coli LY180 16982198 YP_008567536.1 CDS LY180_22675 NC_022364.1 4750025 4751485 D Derived by automated computational analysis using gene prediction method: Protein Homology.; D-mannonate oxidoreductase 4750025..4751485 Escherichia coli LY180 16982199 YP_008567537.1 CDS LY180_22680 NC_022364.1 4751507 4751701 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4751507..4751701) Escherichia coli LY180 16982200 YP_008567538.1 CDS LY180_22685 NC_022364.1 4751700 4752473 D regulates the expression of uxuBA; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4751700..4752473 Escherichia coli LY180 16982201 YP_008567539.1 CDS LY180_22690 NC_022364.1 4752614 4753444 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4752614..4753444) Escherichia coli LY180 16982202 YP_008567540.1 CDS iraD NC_022364.1 4754117 4754509 D inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein 4754117..4754509 Escherichia coli LY180 16982203 YP_008567541.1 CDS LY180_22700 NC_022364.1 4754502 4755413 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4754502..4755413) Escherichia coli LY180 16982204 YP_008567542.1 CDS LY180_22705 NC_022364.1 4755478 4756650 R Derived by automated computational analysis using gene prediction method: Protein Homology.; isoaspartyl dipeptidase complement(4755478..4756650) Escherichia coli LY180 16982205 YP_008567543.1 CDS LY180_22710 NC_022364.1 4756663 4757124 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4756663..4757124) Escherichia coli LY180 16982206 YP_008567544.1 CDS LY180_22715 NC_022364.1 4757121 4757804 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein complement(4757121..4757804) Escherichia coli LY180 16982207 YP_008567545.1 CDS LY180_22720 NC_022364.1 4758054 4758608 D in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; RNA 2'-phosphotransferase 4758054..4758608 Escherichia coli LY180 16982208 YP_008567546.1 CDS LY180_22725 NC_022364.1 4758621 4759799 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4758621..4759799) Escherichia coli LY180 16982209 YP_008567547.1 CDS LY180_22730 NC_022364.1 4759867 4760727 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4759867..4760727) Escherichia coli LY180 16982210 YP_008567548.1 CDS LY180_22735 NC_022364.1 4760792 4761049 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4760792..4761049) Escherichia coli LY180 16982211 YP_008567549.1 CDS LY180_22740 NC_022364.1 4761046 4761813 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4761046..4761813) Escherichia coli LY180 16982212 YP_008567550.1 CDS LY180_22745 NC_022364.1 4761823 4762974 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4761823..4762974) Escherichia coli LY180 16982213 YP_008567551.1 CDS LY180_22750 NC_022364.1 4763090 4764370 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4763090..4764370) Escherichia coli LY180 16982214 YP_008567552.1 CDS LY180_22755 NC_022364.1 4764411 4765643 R is involved in resistance to acriflavine, chloramphenicol, norfloxacin, ethidium bromide and TPP; Derived by automated computational analysis using gene prediction method: Protein Homology.; multidrug transporter complement(4764411..4765643) Escherichia coli LY180 16982215 YP_008567553.1 CDS LY180_22760 NC_022364.1 4766110 4767054 D Derived by automated computational analysis using gene prediction method: Protein Homology.; transposase 4766110..4767054 Escherichia coli LY180 16982216 YP_008567554.1 CDS LY180_22765 NC_022364.1 4767296 4768708 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; GntR family transcriptional regulator complement(4767296..4768708) Escherichia coli LY180 16982217 YP_008567555.1 CDS LY180_22770 NC_022364.1 4768840 4769004 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4768840..4769004 Escherichia coli LY180 16982218 YP_008567556.1 CDS LY180_22775 NC_022364.1 4769356 4771896 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; penicillin G acylase subunit beta 4769356..4771896 Escherichia coli LY180 16982219 YP_008567557.1 CDS LY180_22780 NC_022364.1 4771974 4772930 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GTP-binding protein YjiA complement(4771974..4772930) Escherichia coli LY180 16982220 YP_008567558.1 CDS LY180_22785 NC_022364.1 4772941 4773144 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4772941..4773144) Escherichia coli LY180 16982221 YP_008567559.1 CDS LY180_22790 NC_022364.1 4773194 4775344 R Derived by automated computational analysis using gene prediction method: Protein Homology.; carbon starvation protein CstA complement(4773194..4775344) Escherichia coli LY180 16982222 YP_008567560.1 CDS LY180_22795 NC_022364.1 4775737 4776249 R Derived by automated computational analysis using gene prediction method: Protein Homology.; FMN reductase complement(4775737..4776249) Escherichia coli LY180 16982223 YP_008567561.1 CDS LY180_22800 NC_022364.1 4776267 4777829 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; Pyoverdin chromophore biosynthetic protein pvcC complement(4776267..4777829) Escherichia coli LY180 16982224 YP_008567562.1 CDS LY180_22805 NC_022364.1 4778080 4778970 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 4-hydroxyphenylacetate catabolism protein complement(4778080..4778970) Escherichia coli LY180 16982225 YP_008567563.1 CDS LY180_22810 NC_022364.1 4778980 4780356 R Derived by automated computational analysis using gene prediction method: Protein Homology.; MFS transporter complement(4778980..4780356) Escherichia coli LY180 16982226 YP_008567564.1 CDS LY180_22815 NC_022364.1 4780531 4781319 R cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; Derived by automated computational analysis using gene prediction method: Protein Homology.; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(4780531..4781319) Escherichia coli LY180 16982227 YP_008567565.1 CDS LY180_22820 NC_022364.1 4781330 4782133 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-oxo-hept-3-ene-1,7-dioate hydratase complement(4781330..4782133) Escherichia coli LY180 16982228 YP_008567566.1 CDS LY180_22825 NC_022364.1 4782244 4782624 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 5-carboxymethyl-2-hydroxymuconate isomerase complement(4782244..4782624) Escherichia coli LY180 16982229 YP_008567567.1 CDS LY180_22830 NC_022364.1 4782634 4783485 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 3,4-dihydroxyphenylacetate 2,3-dioxygenase complement(4782634..4783485) Escherichia coli LY180 16982230 YP_008567568.1 CDS LY180_22835 NC_022364.1 4783487 4784953 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.; gamma-aminobutyraldehyde dehydrogenase complement(4783487..4784953) Escherichia coli LY180 16982231 YP_008567569.1 CDS LY180_22840 NC_022364.1 4784950 4786239 R Derived by automated computational analysis using gene prediction method: GeneMarkS+.; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase complement(4784950..4786239) Escherichia coli LY180 16982232 YP_008567570.1 CDS LY180_22845 NC_022364.1 4786511 4786957 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; homoprotocatechuate degradative operon repressor 4786511..4786957 Escherichia coli LY180 16982233 YP_008567571.1 CDS LY180_22850 NC_022364.1 4787076 4788740 D serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.; methyl-accepting chemotaxis protein 4787076..4788740 Escherichia coli LY180 16982234 YP_008567572.1 CDS LY180_22855 NC_022364.1 4788789 4790150 R Derived by automated computational analysis using gene prediction method: Protein Homology.; L-galactonate transporter complement(4788789..4790150) Escherichia coli LY180 16982235 YP_008567573.1 CDS LY180_22860 NC_022364.1 4790365 4791279 R Derived by automated computational analysis using gene prediction method: Protein Homology.; GntR family transcriptional regulator complement(4790365..4791279) Escherichia coli LY180 16982236 YP_008567574.1 CDS LY180_22865 NC_022364.1 4791418 4792440 D Derived by automated computational analysis using gene prediction method: Protein Homology.; galactonate oxidoreductase 4791418..4792440 Escherichia coli LY180 16982237 YP_008567575.1 CDS LY180_22870 NC_022364.1 4792579 4794870 R catalyzes the transfer of phosphoglycerol to the glucan backbone; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerol transferase complement(4792579..4794870) Escherichia coli LY180 16982238 YP_008567576.1 CDS LY180_22875 NC_022364.1 4795124 4795621 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4795124..4795621) Escherichia coli LY180 16982239 YP_008567577.1 CDS LY180_22880 NC_022364.1 4795667 4796404 R acts to load the DnaB helicase onto the initiation site during DNA replication; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA replication protein DnaC complement(4795667..4796404) Escherichia coli LY180 16982240 YP_008567578.1 CDS LY180_22885 NC_022364.1 4796407 4796946 R This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; Derived by automated computational analysis using gene prediction method: Protein Homology.; primosomal protein DnaI complement(4796407..4796946) Escherichia coli LY180 16982241 YP_008567579.1 CDS LY180_22890 NC_022364.1 4797053 4797526 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4797053..4797526) Escherichia coli LY180 16982242 YP_008567580.1 CDS LY180_22895 NC_022364.1 4797517 4798287 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4797517..4798287) Escherichia coli LY180 16982243 YP_008567581.1 CDS LY180_22900 NC_022364.1 4798906 4799631 D Derived by automated computational analysis using gene prediction method: Protein Homology.; LuxR family transcriptional regulator 4798906..4799631 Escherichia coli LY180 16982244 YP_008567582.1 CDS LY180_22905 NC_022364.1 4799643 4800266 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4799643..4800266 Escherichia coli LY180 16982245 YP_008567583.1 CDS LY180_22910 NC_022364.1 4800304 4801092 R Derived by automated computational analysis using gene prediction method: Protein Homology.; ferric iron reductase involved in ferric hydroximate transport complement(4800304..4801092) Escherichia coli LY180 16982246 YP_008567584.1 CDS LY180_22915 NC_022364.1 4801194 4801469 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4801194..4801469 Escherichia coli LY180 16982247 YP_008567585.1 CDS rsmC NC_022364.1 4802098 4803129 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.; 16S rRNA methyltransferase complement(4802098..4803129) Escherichia coli LY180 16982251 YP_008567586.1 CDS LY180_22940 NC_022364.1 4803232 4803645 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA polymerase III subunit psi 4803232..4803645 Escherichia coli LY180 16982254 YP_008567587.1 CDS rimI NC_022364.1 4803614 4804060 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.; alanine acetyltransferase 4803614..4804060 Escherichia coli LY180 16982255 YP_008567588.1 CDS LY180_22950 NC_022364.1 4804075 4804752 D manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.; dUMP phosphatase 4804075..4804752 Escherichia coli LY180 16982256 YP_008567589.1 CDS prfC NC_022364.1 4804843 4806432 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.; peptide chain release factor 3 4804843..4806432 Escherichia coli LY180 16982257 YP_008567590.1 CDS LY180_22960 NC_022364.1 4806825 4807430 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4806825..4807430 Escherichia coli LY180 16982258 YP_008567591.1 CDS LY180_22965 NC_022364.1 4807557 4807718 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; membrane protein 4807557..4807718 Escherichia coli LY180 16982259 YP_008567592.1 CDS LY180_22970 NC_022364.1 4807840 4808913 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4807840..4808913 Escherichia coli LY180 16982260 YP_008567593.1 CDS LY180_22975 NC_022364.1 4808910 4809692 D Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribonuclease 4808910..4809692 Escherichia coli LY180 16982261 YP_008567594.1 CDS LY180_22980 NC_022364.1 4809805 4810668 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4809805..4810668) Escherichia coli LY180 16982262 YP_008567595.1 CDS LY180_22985 NC_022364.1 4810640 4812190 R Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein complement(4810640..4812190) Escherichia coli LY180 16982263 YP_008567596.1 CDS LY180_22990 NC_022364.1 4812242 4812343 D Derived by automated computational analysis using gene prediction method: GeneMarkS+.; hypothetical protein 4812242..4812343 Escherichia coli LY180 16982264 YP_008567597.1 CDS LY180_22995 NC_022364.1 4812448 4813227 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; deoxyribose-phosphate aldolase 4812448..4813227 Escherichia coli LY180 16982265 YP_008567598.1 CDS LY180_23000 NC_022364.1 4813354 4814676 D Derived by automated computational analysis using gene prediction method: Protein Homology.; thymidine phosphorylase 4813354..4814676 Escherichia coli LY180 16982266 YP_008567599.1 CDS LY180_23005 NC_022364.1 4814728 4815951 D Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphopentomutase 4814728..4815951 Escherichia coli LY180 16982267 YP_008567600.1 CDS deoD NC_022364.1 4816031 4816750 D catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.; purine nucleoside phosphorylase 4816031..4816750 Escherichia coli LY180 16982268 YP_008567601.1 CDS lplA NC_022364.1 4817206 4818222 R Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.; lipoate-protein ligase A complement(4817206..4818222) Escherichia coli LY180 16982270 YP_008567602.1 CDS LY180_23025 NC_022364.1 4818250 4818894 R Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein complement(4818250..4818894) Escherichia coli LY180 16982271 YP_008567603.1 CDS serB NC_022364.1 4819000 4819968 D catalyzes the formation of serine from O-phosphoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoserine phosphatase 4819000..4819968 Escherichia coli LY180 16982272 YP_008567604.1 CDS LY180_23035 NC_022364.1 4820017 4821399 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; Derived by automated computational analysis using gene prediction method: Protein Homology.; DNA repair protein RadA 4820017..4821399 Escherichia coli LY180 16982273 YP_008567605.1 CDS LY180_23040 NC_022364.1 4821420 4822652 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4821420..4822652 Escherichia coli LY180 16982274 YP_008567606.1 CDS LY180_23045 NC_022364.1 4822959 4824626 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; Derived by automated computational analysis using gene prediction method: Protein Homology.; heme ABC transporter ATP-binding protein complement(4822959..4824626) Escherichia coli LY180 16982275 YP_008567607.1 CDS LY180_23050 NC_022364.1 4824837 4826774 D catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; Derived by automated computational analysis using gene prediction method: Protein Homology.; lytic murein transglycosylase 4824837..4826774 Escherichia coli LY180 16982276 YP_008567608.1 CDS LY180_23055 NC_022364.1 4826864 4827190 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Derived by automated computational analysis using gene prediction method: Protein Homology.; Trp operon repressor 4826864..4827190 Escherichia coli LY180 16982277 YP_008567609.1 CDS yjjX NC_022364.1 4827232 4827753 R pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; Derived by automated computational analysis using gene prediction method: Protein Homology.; inosine/xanthosine triphosphatase complement(4827232..4827753) Escherichia coli LY180 16982278 YP_008567610.1 CDS LY180_23065 NC_022364.1 4827796 4828443 D catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; Derived by automated computational analysis using gene prediction method: Protein Homology.; phosphoglycerate mutase 4827796..4828443 Escherichia coli LY180 16982279 YP_008567611.1 CDS LY180_23070 NC_022364.1 4828440 4829309 R AraC family; binds to the right arm of the replication origin oriC; Derived by automated computational analysis using gene prediction method: Protein Homology.; right origin-binding protein complement(4828440..4829309) Escherichia coli LY180 16982280 YP_008567612.1 CDS LY180_23075 NC_022364.1 4829520 4829993 D Derived by automated computational analysis using gene prediction method: Protein Homology.; hypothetical protein 4829520..4829993 Escherichia coli LY180 16982281 YP_008567613.1 CDS LY180_23080 NC_022364.1 4830006 4830695 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator 4830006..4830695 Escherichia coli LY180 16982282 YP_008567614.1 CDS LY180_23085 NC_022364.1 4830695 4832119 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; Derived by automated computational analysis using gene prediction method: Protein Homology.; sensory histidine kinase 4830695..4832119 Escherichia coli LY180 16982283 YP_008567615.1 CDS LY180_23090 NC_022364.1 4832177 4833529 D Derived by automated computational analysis using gene prediction method: Protein Homology.; membrane protein 4832177..4833529 Escherichia coli LY180 16982284 YP_008567616.1 CDS LY180_23095 NC_022364.1 4833589 4834305 R Derived by automated computational analysis using gene prediction method: Protein Homology.; transcriptional regulator complement(4833589..4834305) Escherichia coli LY180 16982285 LY180_00985 tRNA LY180_00985 NC_022364.1 225853 225929 D tRNA-Ile 225853..225929 Escherichia coli LY180 16977872 LY180_00990 tRNA LY180_00990 NC_022364.1 225972 226047 D tRNA-Ala 225972..226047 Escherichia coli LY180 16977873 LY180_01005 tRNA LY180_01005 NC_022364.1 229399 229475 D tRNA-Asp 229399..229475 Escherichia coli LY180 16977876 LY180_01055 tRNA LY180_01055 NC_022364.1 237623 237699 D tRNA-Asp 237623..237699 Escherichia coli LY180 16977886 LY180_01785 tRNA LY180_01785 NC_022364.1 366544 366619 D tRNA-Thr 366544..366619 Escherichia coli LY180 16978032 LY180_03005 tRNA LY180_03005 NC_022364.1 636218 636294 D tRNA-Arg 636218..636294 Escherichia coli LY180 16978275 LY180_03570 tRNA LY180_03570 NC_022364.1 761631 761705 R tRNA-Gln complement(761631..761705) Escherichia coli LY180 16978387 LY180_03575 tRNA LY180_03575 NC_022364.1 761743 761817 R tRNA-Gln complement(761743..761817) Escherichia coli LY180 16978388 LY180_03580 tRNA LY180_03580 NC_022364.1 761866 761942 R tRNA-Met complement(761866..761942) Escherichia coli LY180 16978389 LY180_03585 tRNA LY180_03585 NC_022364.1 761958 762032 R tRNA-Gln complement(761958..762032) Escherichia coli LY180 16978390 LY180_03590 tRNA LY180_03590 NC_022364.1 762056 762140 R tRNA-Leu complement(762056..762140) Escherichia coli LY180 16978391 LY180_03595 tRNA LY180_03595 NC_022364.1 762149 762225 R tRNA-Met complement(762149..762225) Escherichia coli LY180 16978392 LY180_03920 tRNA LY180_03920 NC_022364.1 840257 840332 D tRNA-Lys 840257..840332 Escherichia coli LY180 16978457 LY180_03925 tRNA LY180_03925 NC_022364.1 840468 840543 D tRNA-Val 840468..840543 Escherichia coli LY180 16978458 LY180_03930 tRNA LY180_03930 NC_022364.1 840546 840621 D tRNA-Lys 840546..840621 Escherichia coli LY180 16978459 LY180_03935 tRNA LY180_03935 NC_022364.1 840771 840846 D tRNA-Val 840771..840846 Escherichia coli LY180 16978460 LY180_03940 tRNA LY180_03940 NC_022364.1 840850 840925 D tRNA-Lys 840850..840925 Escherichia coli LY180 16978461 LY180_03945 tRNA LY180_03945 NC_022364.1 841072 841147 D tRNA-Lys 841072..841147 Escherichia coli LY180 16978462 LY180_03950 tRNA LY180_03950 NC_022364.1 841181 841256 D tRNA-Lys 841181..841256 Escherichia coli LY180 16978463 LY180_04645 tRNA LY180_04645 NC_022364.1 986572 986659 R tRNA-Ser complement(986572..986659) Escherichia coli LY180 16978602 LY180_05095 tRNA LY180_05095 NC_022364.1 1092892 1092979 R tRNA-Ser complement(1092892..1092979) Escherichia coli LY180 16978692 LY180_06255 tRNA LY180_06255 NC_022364.1 1328962 1329046 R tRNA-Tyr complement(1328962..1329046) Escherichia coli LY180 16978924 LY180_06260 tRNA LY180_06260 NC_022364.1 1329081 1329165 R tRNA-Tyr complement(1329081..1329165) Escherichia coli LY180 16978925 LY180_06980 tRNA LY180_06980 NC_022364.1 1467377 1467452 D tRNA-Thr 1467377..1467452 Escherichia coli LY180 16979069 LY180_06985 tRNA LY180_06985 NC_022364.1 1467456 1467530 D tRNA-Gly 1467456..1467530 Escherichia coli LY180 16979070 LY180_08680 tRNA LY180_08680 NC_022364.1 1829841 1829917 D tRNA-Val 1829841..1829917 Escherichia coli LY180 16979409 LY180_08685 tRNA LY180_08685 NC_022364.1 1829922 1829998 D tRNA-Val 1829922..1829998 Escherichia coli LY180 16979410 LY180_09910 tRNA LY180_09910 NC_022364.1 2078838 2078924 R tRNA-Leu complement(2078838..2078924) Escherichia coli LY180 16979653 LY180_09915 tRNA LY180_09915 NC_022364.1 2078937 2079010 R tRNA-Cys complement(2078937..2079010) Escherichia coli LY180 16979654 LY180_09920 tRNA LY180_09920 NC_022364.1 2079064 2079139 R tRNA-Gly complement(2079064..2079139) Escherichia coli LY180 16979655 LY180_10225 tRNA LY180_10225 NC_022364.1 2133261 2133350 R tRNA-Ser complement(2133261..2133350) Escherichia coli LY180 16979716 LY180_10235 tRNA LY180_10235 NC_022364.1 2134342 2134417 D tRNA-Asn 2134342..2134417 Escherichia coli LY180 16979718 LY180_10280 tRNA LY180_10280 NC_022364.1 2149163 2149238 R tRNA-Asn complement(2149163..2149238) Escherichia coli LY180 16979727 LY180_10290 tRNA LY180_10290 NC_022364.1 2150987 2151062 D tRNA-Asn 2150987..2151062 Escherichia coli LY180 16979729 LY180_10305 tRNA LY180_10305 NC_022364.1 2153396 2153471 D tRNA-Asn 2153396..2153471 Escherichia coli LY180 16979732 LY180_11440 tRNA LY180_11440 NC_022364.1 2395264 2395340 D tRNA-Pro 2395264..2395340 Escherichia coli LY180 16979959 LY180_12155 tRNA LY180_12155 NC_022364.1 2557818 2557892 D tRNA-Arg 2557818..2557892 Escherichia coli LY180 16980101 LY180_12345 tRNA LY180_12345 NC_022364.1 2603850 2603925 R tRNA-Ala complement(2603850..2603925) Escherichia coli LY180 16980139 LY180_12350 tRNA LY180_12350 NC_022364.1 2603965 2604040 R tRNA-Ala complement(2603965..2604040) Escherichia coli LY180 16980140 LY180_12370 tRNA LY180_12370 NC_022364.1 2606740 2606815 D tRNA-Val 2606740..2606815 Escherichia coli LY180 16980144 LY180_12375 tRNA LY180_12375 NC_022364.1 2606860 2606935 D tRNA-Val 2606860..2606935 Escherichia coli LY180 16980145 LY180_12380 tRNA LY180_12380 NC_022364.1 2606982 2607057 D tRNA-Val 2606982..2607057 Escherichia coli LY180 16980146 LY180_12385 tRNA LY180_12385 NC_022364.1 2607062 2607137 D tRNA-Lys 2607062..2607137 Escherichia coli LY180 16980147 LY180_13290 tRNA LY180_13290 NC_022364.1 2804339 2804414 R tRNA-Glu complement(2804339..2804414) Escherichia coli LY180 16980328 LY180_13635 tRNA LY180_13635 NC_022364.1 2870104 2870180 R tRNA-Arg complement(2870104..2870180) Escherichia coli LY180 16980397 LY180_13640 tRNA LY180_13640 NC_022364.1 2870379 2870455 R tRNA-Arg complement(2870379..2870455) Escherichia coli LY180 16980398 LY180_13645 tRNA LY180_13645 NC_022364.1 2870519 2870595 R tRNA-Arg complement(2870519..2870595) Escherichia coli LY180 16980399 LY180_13650 tRNA LY180_13650 NC_022364.1 2870793 2870869 R tRNA-Arg complement(2870793..2870869) Escherichia coli LY180 16980400 LY180_13655 tRNA LY180_13655 NC_022364.1 2870873 2870965 R tRNA-Ser complement(2870873..2870965) Escherichia coli LY180 16980401 LY180_14300 tRNA LY180_14300 NC_022364.1 3005841 3005917 D tRNA-Met 3005841..3005917 Escherichia coli LY180 16980530 LY180_14305 tRNA LY180_14305 NC_022364.1 3005951 3006027 D tRNA-Met 3005951..3006027 Escherichia coli LY180 16980531 LY180_14310 tRNA LY180_14310 NC_022364.1 3006061 3006137 D tRNA-Met 3006061..3006137 Escherichia coli LY180 16980532 LY180_14740 tRNA LY180_14740 NC_022364.1 3101413 3101486 R tRNA-Gly complement(3101413..3101486) Escherichia coli LY180 16980618 LY180_15295 tRNA LY180_15295 NC_022364.1 3217675 3217750 D tRNA-Phe 3217675..3217750 Escherichia coli LY180 16980729 LY180_15840 tRNA LY180_15840 NC_022364.1 3334469 3334544 D tRNA-Met 3334469..3334544 Escherichia coli LY180 16980838 LY180_16380 tRNA LY180_16380 NC_022364.1 3447182 3447258 R tRNA-Met complement(3447182..3447258) Escherichia coli LY180 16980946 LY180_16395 tRNA LY180_16395 NC_022364.1 3451041 3451127 R tRNA-Leu complement(3451041..3451127) Escherichia coli LY180 16980949 LY180_16860 tRNA LY180_16860 NC_022364.1 3545287 3545362 R tRNA-Thr complement(3545287..3545362) Escherichia coli LY180 16981042 LY180_16875 tRNA LY180_16875 NC_022364.1 3548674 3548749 R tRNA-Ala complement(3548674..3548749) Escherichia coli LY180 16981045 LY180_16880 tRNA LY180_16880 NC_022364.1 3548792 3548868 R tRNA-Ile complement(3548792..3548868) Escherichia coli LY180 16981046 LY180_18185 tRNA LY180_18185 NC_022364.1 3815500 3815576 R tRNA-Pro complement(3815500..3815576) Escherichia coli LY180 16981307 LY180_18840 tRNA LY180_18840 NC_022364.1 3956864 3956958 D tRNA-Sec 3956864..3956958 Escherichia coli LY180 16981437 LY180_19470 tRNA LY180_19470 NC_022364.1 4084628 4084703 D tRNA-Glu 4084628..4084703 Escherichia coli LY180 16981561 LY180_19485 tRNA LY180_19485 NC_022364.1 4088065 4088141 D tRNA-Asp 4088065..4088141 Escherichia coli LY180 16981564 LY180_19490 tRNA LY180_19490 NC_022364.1 4088150 4088225 D tRNA-Trp 4088150..4088225 Escherichia coli LY180 16981565 LY180_19660 tRNA LY180_19660 NC_022364.1 4123569 4123645 D tRNA-Arg 4123569..4123645 Escherichia coli LY180 16981599 LY180_19665 tRNA LY180_19665 NC_022364.1 4123704 4123779 D tRNA-His 4123704..4123779 Escherichia coli LY180 16981600 LY180_19670 tRNA LY180_19670 NC_022364.1 4123800 4123886 D tRNA-Leu 4123800..4123886 Escherichia coli LY180 16981601 LY180_19675 tRNA LY180_19675 NC_022364.1 4123929 4124005 D tRNA-Pro 4123929..4124005 Escherichia coli LY180 16981602 LY180_19950 tRNA LY180_19950 NC_022364.1 4179580 4179656 D tRNA-Ile 4179580..4179656 Escherichia coli LY180 16981657 LY180_19955 tRNA LY180_19955 NC_022364.1 4179699 4179774 D tRNA-Ala 4179699..4179774 Escherichia coli LY180 16981658 LY180_20825 tRNA LY180_20825 NC_022364.1 4352458 4352533 D tRNA-Glu 4352458..4352533 Escherichia coli LY180 16981832 LY180_20855 tRNA LY180_20855 NC_022364.1 4359473 4359548 D tRNA-Thr 4359473..4359548 Escherichia coli LY180 16981838 LY180_20860 tRNA LY180_20860 NC_022364.1 4359557 4359641 D tRNA-Tyr 4359557..4359641 Escherichia coli LY180 16981839 LY180_20865 tRNA LY180_20865 NC_022364.1 4359758 4359832 D tRNA-Gly 4359758..4359832 Escherichia coli LY180 16981840 LY180_20870 tRNA LY180_20870 NC_022364.1 4359839 4359914 D tRNA-Thr 4359839..4359914 Escherichia coli LY180 16981841 LY180_21015 tRNA LY180_21015 NC_022364.1 4392917 4392992 D tRNA-Glu 4392917..4392992 Escherichia coli LY180 16981870 LY180_21720 tRNA LY180_21720 NC_022364.1 4553577 4553652 R tRNA-Phe complement(4553577..4553652) Escherichia coli LY180 16982009 LY180_21875 tRNA LY180_21875 NC_022364.1 4584272 4584347 D tRNA-Gly 4584272..4584347 Escherichia coli LY180 16982040 LY180_21880 tRNA LY180_21880 NC_022364.1 4584384 4584459 D tRNA-Gly 4584384..4584459 Escherichia coli LY180 16982041 LY180_21885 tRNA LY180_21885 NC_022364.1 4584495 4584570 D tRNA-Gly 4584495..4584570 Escherichia coli LY180 16982042 LY180_22415 tRNA LY180_22415 NC_022364.1 4689072 4689156 D tRNA-Leu 4689072..4689156 Escherichia coli LY180 16982147 LY180_22920 tRNA LY180_22920 NC_022364.1 4801508 4801594 R tRNA-Leu complement(4801508..4801594) Escherichia coli LY180 16982248 LY180_22925 tRNA LY180_22925 NC_022364.1 4801629 4801715 R tRNA-Leu complement(4801629..4801715) Escherichia coli LY180 16982249 LY180_22930 tRNA LY180_22930 NC_022364.1 4801744 4801830 R tRNA-Leu complement(4801744..4801830) Escherichia coli LY180 16982250 LY180_00980 rRNA LY180_00980 NC_022364.1 224244 225784 D 16S ribosomal RNA 224244..225784 Escherichia coli LY180 16977871 LY180_00995 rRNA LY180_00995 NC_022364.1 226222 229152 D 23S ribosomal RNA 226222..229152 Escherichia coli LY180 16977874 LY180_01000 rRNA LY180_01000 NC_022364.1 229229 229344 D 5S ribosomal RNA 229229..229344 Escherichia coli LY180 16977875 LY180_13280 rRNA LY180_13280 NC_022364.1 2801032 2801147 R 5S ribosomal RNA complement(2801032..2801147) Escherichia coli LY180 16980326 LY180_13285 rRNA LY180_13285 NC_022364.1 2801224 2804154 R 23S ribosomal RNA complement(2801224..2804154) Escherichia coli LY180 16980327 LY180_13295 rRNA LY180_13295 NC_022364.1 2804586 2806126 R 16S ribosomal RNA complement(2804586..2806126) Escherichia coli LY180 16980329 LY180_16855 rRNA LY180_16855 NC_022364.1 3545132 3545247 R 5S ribosomal RNA complement(3545132..3545247) Escherichia coli LY180 16981041 LY180_16865 rRNA LY180_16865 NC_022364.1 3545377 3545492 R 5S ribosomal RNA complement(3545377..3545492) Escherichia coli LY180 16981043 LY180_16870 rRNA LY180_16870 NC_022364.1 3545569 3548499 R 23S ribosomal RNA complement(3545569..3548499) Escherichia coli LY180 16981044 LY180_16885 rRNA LY180_16885 NC_022364.1 3548937 3550477 R 16S ribosomal RNA complement(3548937..3550477) Escherichia coli LY180 16981047 LY180_19465 rRNA LY180_19465 NC_022364.1 4083002 4084542 D 16S ribosomal RNA 4083002..4084542 Escherichia coli LY180 16981560 LY180_19475 rRNA LY180_19475 NC_022364.1 4084888 4087817 D 23S ribosomal RNA 4084888..4087817 Escherichia coli LY180 16981562 LY180_19480 rRNA LY180_19480 NC_022364.1 4087895 4088010 D 5S ribosomal RNA 4087895..4088010 Escherichia coli LY180 16981563 LY180_19945 rRNA LY180_19945 NC_022364.1 4177971 4179511 D 16S ribosomal RNA 4177971..4179511 Escherichia coli LY180 16981656 LY180_19960 rRNA LY180_19960 NC_022364.1 4179949 4182877 D 23S ribosomal RNA 4179949..4182877 Escherichia coli LY180 16981659 LY180_19965 rRNA LY180_19965 NC_022364.1 4182956 4183071 D 5S ribosomal RNA 4182956..4183071 Escherichia coli LY180 16981660 LY180_20820 rRNA LY180_20820 NC_022364.1 4350746 4352286 D 16S ribosomal RNA 4350746..4352286 Escherichia coli LY180 16981831 LY180_20830 rRNA LY180_20830 NC_022364.1 4352718 4355646 D 23S ribosomal RNA 4352718..4355646 Escherichia coli LY180 16981833 LY180_20835 rRNA LY180_20835 NC_022364.1 4355724 4355839 D 5S ribosomal RNA 4355724..4355839 Escherichia coli LY180 16981834 LY180_21010 rRNA LY180_21010 NC_022364.1 4391291 4392831 D 16S ribosomal RNA 4391291..4392831 Escherichia coli LY180 16981869 LY180_21045 rRNA LY180_21045 NC_022364.1 4400789 4400904 D 5S ribosomal RNA 4400789..4400904 Escherichia coli LY180 16981876