-- dump date 20140619_090740 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002290998.1 209916807 6998234 1..309 1 NC_011407.1 hypothetical protein 309 6998234 ECSE_P4-0001 Escherichia coli SE11 hypothetical protein YP_002290998.1 1 D 409438 CDS YP_002290999.1 209916808 6998225 complement(488..1180) 1 NC_011407.1 hypothetical protein 1180 6998225 ECSE_P4-0002 Escherichia coli SE11 hypothetical protein YP_002290999.1 488 R 409438 CDS YP_002291000.1 209916809 6998226 complement(1294..1491) 1 NC_011407.1 hypothetical protein 1491 6998226 ECSE_P4-0003 Escherichia coli SE11 hypothetical protein YP_002291000.1 1294 R 409438 CDS YP_002291001.1 209916810 6998227 complement(1616..3169) 1 NC_011407.1 mobilization protein MobA 3169 6998227 ECSE_P4-0005 Escherichia coli SE11 mobilization protein MobA YP_002291001.1 1616 R 409438 CDS YP_002291002.1 209916811 6998229 complement(1963..2481) 1 NC_011407.1 mobilization protein MobB 2481 6998229 ECSE_P4-0004 Escherichia coli SE11 mobilization protein MobB YP_002291002.1 1963 R 409438 CDS YP_002291003.1 209916812 6998228 complement(3159..3482) 1 NC_011407.1 mobilization protein MobC 3482 6998228 ECSE_P4-0006 Escherichia coli SE11 mobilization protein MobC YP_002291003.1 3159 R 409438 CDS YP_002291004.1 209916813 6998230 3548..3739 1 NC_011407.1 RNA I inhibition modulator protein Rom 3739 6998230 ECSE_P4-0007 Escherichia coli SE11 RNA I inhibition modulator protein Rom YP_002291004.1 3548 D 409438 CDS YP_002291005.1 209916814 6998231 complement(4040..4195) 1 NC_011407.1 hypothetical protein 4195 6998231 ECSE_P4-0008 Escherichia coli SE11 hypothetical protein YP_002291005.1 4040 R 409438 CDS YP_002291006.1 209916815 6998232 complement(4749..5423) 1 NC_011407.1 hypothetical protein 5423 6998232 ECSE_P4-0009 Escherichia coli SE11 hypothetical protein YP_002291006.1 4749 R 409438 CDS YP_002291007.1 209916816 6998233 5771..6187 1 NC_011407.1 hypothetical protein 6187 6998233 ECSE_P4-0010 Escherichia coli SE11 hypothetical protein YP_002291007.1 5771 D 409438 CDS YP_002291008.1 209916818 6998242 1..1554 1 NC_011408.1 mobilization protein MobA 1554 6998242 ECSE_P5-0001 Escherichia coli SE11 mobilization protein MobA YP_002291008.1 1 D 409438 CDS YP_002291009.1 209916819 6998236 689..1207 1 NC_011408.1 mobilization protein MobB 1207 6998236 ECSE_P5-0002 Escherichia coli SE11 mobilization protein MobB YP_002291009.1 689 D 409438 CDS YP_002291010.1 209916820 6998237 1636..1782 1 NC_011408.1 hypothetical protein 1782 6998237 ECSE_P5-0003 Escherichia coli SE11 hypothetical protein YP_002291010.1 1636 D 409438 CDS YP_002291011.1 209916821 6998238 complement(1819..2799) 1 NC_011408.1 hypothetical protein 2799 6998238 ECSE_P5-0004 Escherichia coli SE11 hypothetical protein YP_002291011.1 1819 R 409438 CDS YP_002291012.1 209916822 6998239 complement(2801..3448) 1 NC_011408.1 hypothetical protein 3448 6998239 ECSE_P5-0005 Escherichia coli SE11 hypothetical protein YP_002291012.1 2801 R 409438 CDS YP_002291013.1 209916823 6998240 4367..4621 1 NC_011408.1 hypothetical protein 4621 6998240 ECSE_P5-0006 Escherichia coli SE11 hypothetical protein YP_002291013.1 4367 D 409438 CDS YP_002291014.1 209916824 6998241 complement(4798..4989) 1 NC_011408.1 hypothetical protein 4989 6998241 ECSE_P5-0007 Escherichia coli SE11 hypothetical protein YP_002291014.1 4798 R 409438 CDS YP_002291084.1 209916826 6998253 1..702 1 NC_011411.1 replication protein 702 6998253 ECSE_P6-0001 Escherichia coli SE11 replication protein YP_002291084.1 1 D 409438 CDS YP_002291085.1 209916827 6998251 complement(958..3117) 1 NC_011411.1 hypothetical protein 3117 6998251 ECSE_P6-0002 Escherichia coli SE11 hypothetical protein YP_002291085.1 958 R 409438 CDS YP_002291086.1 209916828 6998252 3296..3550 1 NC_011411.1 hypothetical protein 3550 6998252 ECSE_P6-0003 Escherichia coli SE11 hypothetical protein YP_002291086.1 3296 D 409438 CDS YP_002291150.1 209916830 6998366 1..765 1 NC_011413.1 putative fimbrial chaperone 765 6998366 ECSE_P2-0001 Escherichia coli SE11 putative fimbrial chaperone YP_002291150.1 1 D 409438 CDS YP_002291151.1 209916831 6998255 795..3302 1 NC_011413.1 putative fimbrial usher protein 3302 6998255 ECSE_P2-0002 Escherichia coli SE11 putative fimbrial usher protein YP_002291151.1 795 D 409438 CDS YP_002291152.1 209916832 6998256 3434..3913 1 NC_011413.1 putative fimbrial protein 3913 6998256 ECSE_P2-0003 Escherichia coli SE11 putative fimbrial protein YP_002291152.1 3434 D 409438 CDS YP_002291153.1 209916833 6998257 3941..4420 1 NC_011413.1 putative fimbrial protein 4420 6998257 ECSE_P2-0004 Escherichia coli SE11 putative fimbrial protein YP_002291153.1 3941 D 409438 CDS YP_002291154.1 209916834 6998258 4518..4970 1 NC_011413.1 putative fimbrial protein 4970 6998258 ECSE_P2-0005 Escherichia coli SE11 putative fimbrial protein YP_002291154.1 4518 D 409438 CDS YP_002291155.1 209916835 6998259 complement(5101..5691) 1 NC_011413.1 hypothetical protein 5691 6998259 ECSE_P2-0006 Escherichia coli SE11 hypothetical protein YP_002291155.1 5101 R 409438 CDS YP_002291156.1 209916836 6998260 complement(5691..5948) 1 NC_011413.1 hypothetical protein 5948 6998260 ECSE_P2-0008 Escherichia coli SE11 hypothetical protein YP_002291156.1 5691 R 409438 CDS YP_002291157.1 209916837 6998262 5924..6070 1 NC_011413.1 hypothetical protein 6070 6998262 ECSE_P2-0007 Escherichia coli SE11 hypothetical protein YP_002291157.1 5924 D 409438 CDS YP_002291158.1 209916838 6998261 6051..6221 1 NC_011413.1 hypothetical protein 6221 6998261 ECSE_P2-0009 Escherichia coli SE11 hypothetical protein YP_002291158.1 6051 D 409438 CDS YP_002291159.1 209916839 6998263 6543..6761 1 NC_011413.1 plasmid maintenance protein CcdA 6761 6998263 ECSE_P2-0010 Escherichia coli SE11 plasmid maintenance protein CcdA YP_002291159.1 6543 D 409438 CDS YP_002291160.1 209916840 6998264 6736..7068 1 NC_011413.1 controlled cell death protein; post-segregation toxin; toxin addiction system; plasmid maintenance protein CcdB 7068 6998264 ECSE_P2-0011 Escherichia coli SE11 plasmid maintenance protein CcdB YP_002291160.1 6736 D 409438 CDS YP_002291161.1 209916841 6998265 7069..7875 1 NC_011413.1 resolvase 7875 6998265 ECSE_P2-0012 Escherichia coli SE11 resolvase YP_002291161.1 7069 D 409438 CDS YP_002291162.1 209916842 6998266 complement(8562..9320) 1 NC_011413.1 replication protein RepB 9320 6998266 ECSE_P2-0013 Escherichia coli SE11 replication protein RepB YP_002291162.1 8562 R 409438 CDS YP_002291163.1 209916843 6998267 9914..11119 1 NC_011413.1 partitioning protein ParA 11119 6998267 ECSE_P2-0014 Escherichia coli SE11 partitioning protein ParA YP_002291163.1 9914 D 409438 CDS YP_002291164.1 209916844 6998268 11116..12087 1 NC_011413.1 partitioning protein ParB 12087 6998268 ECSE_P2-0015 Escherichia coli SE11 partitioning protein ParB YP_002291164.1 11116 D 409438 CDS YP_002291165.1 209916845 6998269 complement(12224..13345) 1 NC_011413.1 truncated UV protection protein ImpB 13345 6998269 ECSE_P2-0016 Escherichia coli SE11 truncated UV protection protein ImpB YP_002291165.1 12224 R 409438 CDS YP_002291166.1 209916846 6998270 13432..14430 1 NC_011413.1 phage integrase 14430 6998270 ECSE_P2-0017 Escherichia coli SE11 phage integrase YP_002291166.1 13432 D 409438 CDS YP_002291167.1 209916847 6998271 14388..15338 1 NC_011413.1 hypothetical protein 15338 6998271 ECSE_P2-0018 Escherichia coli SE11 hypothetical protein YP_002291167.1 14388 D 409438 CDS YP_002291168.1 209916848 6998272 15319..16638 1 NC_011413.1 phage integrase 16638 6998272 ECSE_P2-0019 Escherichia coli SE11 phage integrase YP_002291168.1 15319 D 409438 CDS YP_002291169.1 209916849 6998273 complement(17216..18070) 1 NC_011413.1 hypothetical protein 18070 6998273 ECSE_P2-0020 Escherichia coli SE11 hypothetical protein YP_002291169.1 17216 R 409438 CDS YP_002291170.1 209916850 6998274 18205..19386 1 NC_011413.1 hypothetical protein 19386 6998274 ECSE_P2-0021 Escherichia coli SE11 hypothetical protein YP_002291170.1 18205 D 409438 CDS YP_002291171.1 209916851 6998275 19383..21611 1 NC_011413.1 hypothetical protein 21611 6998275 ECSE_P2-0022 Escherichia coli SE11 hypothetical protein YP_002291171.1 19383 D 409438 CDS YP_002291172.1 209916852 6998276 complement(21629..21784) 1 NC_011413.1 truncated UV protection protein ImpB 21784 6998276 ECSE_P2-0023 Escherichia coli SE11 truncated UV protection protein ImpB YP_002291172.1 21629 R 409438 CDS YP_002291173.1 209916853 6998277 complement(21784..22221) 1 NC_011413.1 UV protection protein ImpA 22221 6998277 ECSE_P2-0024 Escherichia coli SE11 UV protection protein ImpA YP_002291173.1 21784 R 409438 CDS YP_002291174.1 209916854 6998278 22815..23786 1 NC_011413.1 hypothetical protein 23786 6998278 ECSE_P2-0025 Escherichia coli SE11 hypothetical protein YP_002291174.1 22815 D 409438 CDS YP_002291175.1 209916855 6998279 23783..24094 1 NC_011413.1 hypothetical protein 24094 6998279 ECSE_P2-0026 Escherichia coli SE11 hypothetical protein YP_002291175.1 23783 D 409438 CDS YP_002291176.1 209916856 6998280 24170..24853 1 NC_011413.1 putative methylase 24853 6998280 ECSE_P2-0027 Escherichia coli SE11 putative methylase YP_002291176.1 24170 D 409438 CDS YP_002291177.1 209916857 6998281 24854..25075 1 NC_011413.1 hypothetical protein 25075 6998281 ECSE_P2-0028 Escherichia coli SE11 hypothetical protein YP_002291177.1 24854 D 409438 CDS YP_002291178.1 209916858 6998282 25089..25523 1 NC_011413.1 hypothetical protein 25523 6998282 ECSE_P2-0029 Escherichia coli SE11 hypothetical protein YP_002291178.1 25089 D 409438 CDS YP_002291179.1 209916859 6998283 25569..26345 1 NC_011413.1 hypothetical protein 26345 6998283 ECSE_P2-0030 Escherichia coli SE11 hypothetical protein YP_002291179.1 25569 D 409438 CDS YP_002291180.1 209916860 6998284 26760..27185 1 NC_011413.1 hypothetical protein 27185 6998284 ECSE_P2-0031 Escherichia coli SE11 hypothetical protein YP_002291180.1 26760 D 409438 CDS YP_002291181.1 209916861 6998285 27232..27654 1 NC_011413.1 hypothetical protein 27654 6998285 ECSE_P2-0032 Escherichia coli SE11 hypothetical protein YP_002291181.1 27232 D 409438 CDS YP_002291182.1 209916862 6998286 27651..27842 1 NC_011413.1 hypothetical protein 27842 6998286 ECSE_P2-0033 Escherichia coli SE11 hypothetical protein YP_002291182.1 27651 D 409438 CDS YP_002291183.1 209916863 6998287 27856..27993 1 NC_011413.1 hypothetical protein 27993 6998287 ECSE_P2-0034 Escherichia coli SE11 hypothetical protein YP_002291183.1 27856 D 409438 CDS YP_002291184.1 209916864 6998288 complement(28107..28373) 1 NC_011413.1 hypothetical protein 28373 6998288 ECSE_P2-0035 Escherichia coli SE11 hypothetical protein YP_002291184.1 28107 R 409438 CDS YP_002291185.1 209916865 6998289 complement(28896..29147) 1 NC_011413.1 hypothetical protein 29147 6998289 ECSE_P2-0036 Escherichia coli SE11 hypothetical protein YP_002291185.1 28896 R 409438 CDS YP_002291186.1 209916866 6998290 29151..30512 1 NC_011413.1 hypothetical protein 30512 6998290 ECSE_P2-0037 Escherichia coli SE11 hypothetical protein YP_002291186.1 29151 D 409438 CDS YP_002291187.1 209916867 6998291 30560..31123 1 NC_011413.1 hypothetical protein 31123 6998291 ECSE_P2-0038 Escherichia coli SE11 hypothetical protein YP_002291187.1 30560 D 409438 CDS YP_002291188.1 209916868 6998292 31123..31347 1 NC_011413.1 hypothetical protein 31347 6998292 ECSE_P2-0039 Escherichia coli SE11 hypothetical protein YP_002291188.1 31123 D 409438 CDS YP_002291189.1 209916869 6998293 31362..31613 1 NC_011413.1 hypothetical protein 31613 6998293 ECSE_P2-0040 Escherichia coli SE11 hypothetical protein YP_002291189.1 31362 D 409438 CDS YP_002291190.1 209916870 6998294 31989..32528 1 NC_011413.1 single-stranded DNA-binding protein 32528 6998294 ECSE_P2-0041 Escherichia coli SE11 single-stranded DNA-binding protein YP_002291190.1 31989 D 409438 CDS YP_002291191.1 209916871 6998295 32539..32823 1 NC_011413.1 hypothetical protein 32823 6998295 ECSE_P2-0042 Escherichia coli SE11 hypothetical protein YP_002291191.1 32539 D 409438 CDS YP_002291192.1 209916872 6998296 32889..34853 1 NC_011413.1 hypothetical protein 34853 6998296 ECSE_P2-0043 Escherichia coli SE11 hypothetical protein YP_002291192.1 32889 D 409438 CDS YP_002291193.1 209916873 6998297 34922..35356 1 NC_011413.1 plasmid SOS inhibition protein B 35356 psiB 6998297 psiB Escherichia coli SE11 plasmid SOS inhibition protein B YP_002291193.1 34922 D 409438 CDS YP_002291194.1 209916874 6998298 35353..36072 1 NC_011413.1 PsiA; plasmid SOS inhibition protein A 36072 6998298 ECSE_P2-0045 Escherichia coli SE11 plasmid SOS inhibition protein A YP_002291194.1 35353 D 409438 CDS YP_002291195.1 209916875 6998299 36036..36383 1 NC_011413.1 hypothetical protein 36383 6998299 ECSE_P2-0046 Escherichia coli SE11 hypothetical protein YP_002291195.1 36036 D 409438 CDS YP_002291196.1 209916876 6998300 complement(36627..36755) 1 NC_011413.1 hypothetical protein 36755 6998300 ECSE_P2-0047 Escherichia coli SE11 hypothetical protein YP_002291196.1 36627 R 409438 CDS YP_002291197.1 209916877 6998301 36845..37009 1 NC_011413.1 hypothetical protein 37009 6998301 ECSE_P2-0048 Escherichia coli SE11 hypothetical protein YP_002291197.1 36845 D 409438 CDS YP_002291198.1 209916878 6998302 complement(36990..37349) 1 NC_011413.1 hypothetical protein 37349 6998302 ECSE_P2-0049 Escherichia coli SE11 hypothetical protein YP_002291198.1 36990 R 409438 CDS YP_002291199.1 209916879 6998303 37649..37945 1 NC_011413.1 hypothetical protein 37945 6998303 ECSE_P2-0050 Escherichia coli SE11 hypothetical protein YP_002291199.1 37649 D 409438 CDS YP_002291200.1 209916880 6998304 38051..38872 1 NC_011413.1 hypothetical protein 38872 6998304 ECSE_P2-0051 Escherichia coli SE11 hypothetical protein YP_002291200.1 38051 D 409438 CDS YP_002291201.1 209916881 6998305 38995..39144 1 NC_011413.1 hypothetical protein 39144 6998305 ECSE_P2-0052 Escherichia coli SE11 hypothetical protein YP_002291201.1 38995 D 409438 CDS YP_002291202.1 209916882 6998306 complement(39151..39603) 1 NC_011413.1 hypothetical protein 39603 6998306 ECSE_P2-0053 Escherichia coli SE11 hypothetical protein YP_002291202.1 39151 R 409438 CDS YP_002291203.1 209916883 6998307 complement(39916..40152) 1 NC_011413.1 hypothetical protein 40152 6998307 ECSE_P2-0055 Escherichia coli SE11 hypothetical protein YP_002291203.1 39916 R 409438 CDS YP_002291204.1 209916884 6998309 40137..40511 1 NC_011413.1 conjugal transfer protein TraM 40511 6998309 ECSE_P2-0054 Escherichia coli SE11 conjugal transfer protein TraM YP_002291204.1 40137 D 409438 CDS YP_002291205.1 209916885 6998308 41158..41406 1 NC_011413.1 hypothetical protein 41406 6998308 ECSE_P2-0056 Escherichia coli SE11 hypothetical protein YP_002291205.1 41158 D 409438 CDS YP_002291206.1 209916886 6998310 41490..41696 1 NC_011413.1 hypothetical protein 41696 6998310 ECSE_P2-0057 Escherichia coli SE11 hypothetical protein YP_002291206.1 41490 D 409438 CDS YP_002291207.1 209916887 6998311 41997..42368 1 NC_011413.1 putative TraA protein 42368 6998311 ECSE_P2-0058 Escherichia coli SE11 putative TraA protein YP_002291207.1 41997 D 409438 CDS YP_002291208.1 209916888 6998312 42387..42686 1 NC_011413.1 conjugal transfer pilus assembly protein TraL 42686 6998312 ECSE_P2-0059 Escherichia coli SE11 conjugal transfer pilus assembly protein TraL YP_002291208.1 42387 D 409438 CDS YP_002291209.1 209916889 6998313 42701..43279 1 NC_011413.1 conjugal transfer pilus assembly protein TraE 43279 6998313 ECSE_P2-0060 Escherichia coli SE11 conjugal transfer pilus assembly protein TraE YP_002291209.1 42701 D 409438 CDS YP_002291210.1 209916890 6998314 43254..44033 1 NC_011413.1 conjugal transfer protein TraK 44033 6998314 ECSE_P2-0061 Escherichia coli SE11 conjugal transfer protein TraK YP_002291210.1 43254 D 409438 CDS YP_002291211.1 209916891 6998315 44026..45372 1 NC_011413.1 conjugal transfer pilus assembly protein TraB 45372 6998315 ECSE_P2-0062 Escherichia coli SE11 conjugal transfer pilus assembly protein TraB YP_002291211.1 44026 D 409438 CDS YP_002291212.1 209916892 6998316 45369..45902 1 NC_011413.1 conjugal transfer protein TraV 45902 6998316 ECSE_P2-0063 Escherichia coli SE11 conjugal transfer protein TraV YP_002291212.1 45369 D 409438 CDS YP_002291213.1 209916893 6998317 45932..48538 1 NC_011413.1 similar to VirB4; conjugal transfer ATP-binding protein TraC 48538 6998317 ECSE_P2-0064 Escherichia coli SE11 conjugal transfer ATP-binding protein TraC YP_002291213.1 45932 D 409438 CDS YP_002291214.1 209916894 6998318 48517..48933 1 NC_011413.1 TrbI protein 48933 6998318 ECSE_P2-0065 Escherichia coli SE11 TrbI protein YP_002291214.1 48517 D 409438 CDS YP_002291215.1 209916895 6998319 48936..49160 1 NC_011413.1 TraR protein 49160 6998319 ECSE_P2-0066 Escherichia coli SE11 TraR protein YP_002291215.1 48936 D 409438 CDS YP_002291216.1 209916896 6998320 49166..49774 1 NC_011413.1 TraW protein 49774 6998320 ECSE_P2-0067 Escherichia coli SE11 TraW protein YP_002291216.1 49166 D 409438 CDS YP_002291217.1 209916897 6998321 49771..50769 1 NC_011413.1 conjugal transfer pilus assembly protein TraU 50769 6998321 ECSE_P2-0068 Escherichia coli SE11 conjugal transfer pilus assembly protein TraU YP_002291217.1 49771 D 409438 CDS YP_002291218.1 209916898 6998322 50766..51263 1 NC_011413.1 hypothetical protein 51263 6998322 ECSE_P2-0069 Escherichia coli SE11 hypothetical protein YP_002291218.1 50766 D 409438 CDS YP_002291219.1 209916899 6998323 51690..51998 1 NC_011413.1 conjugal transfer protein TrbD 51998 6998323 ECSE_P2-0070 Escherichia coli SE11 conjugal transfer protein TrbD YP_002291219.1 51690 D 409438 CDS YP_002291220.1 209916900 6998324 52166..52771 1 NC_011413.1 TrbC protein 52771 6998324 ECSE_P2-0071 Escherichia coli SE11 TrbC protein YP_002291220.1 52166 D 409438 CDS YP_002291221.1 209916901 6998325 52768..54702 1 NC_011413.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 54702 6998325 ECSE_P2-0072 Escherichia coli SE11 conjugal transfer mating pair stabilization protein TraN YP_002291221.1 52768 D 409438 CDS YP_002291222.1 209916902 6998326 54716..55489 1 NC_011413.1 TraF protein 55489 6998326 ECSE_P2-0073 Escherichia coli SE11 TraF protein YP_002291222.1 54716 D 409438 CDS YP_002291223.1 209916903 6998327 55486..55779 1 NC_011413.1 hypothetical protein 55779 6998327 ECSE_P2-0074 Escherichia coli SE11 hypothetical protein YP_002291223.1 55486 D 409438 CDS YP_002291224.1 209916904 6998328 55781..56356 1 NC_011413.1 conjugal transfer protein TrbB 56356 6998328 ECSE_P2-0075 Escherichia coli SE11 conjugal transfer protein TrbB YP_002291224.1 55781 D 409438 CDS YP_002291225.1 209916905 6998329 56808..58214 1 NC_011413.1 conjugal transfer pilus assembly protein TraH 58214 6998329 ECSE_P2-0076 Escherichia coli SE11 conjugal transfer pilus assembly protein TraH YP_002291225.1 56808 D 409438 CDS YP_002291226.1 209916906 6998330 58214..61102 1 NC_011413.1 conjugal transfer mating pair stabilization protein TraG 61102 6998330 ECSE_P2-0077 Escherichia coli SE11 conjugal transfer mating pair stabilization protein TraG YP_002291226.1 58214 D 409438 CDS YP_002291227.1 209916907 6998331 61077..61766 1 NC_011413.1 hypothetical protein 61766 6998331 ECSE_P2-0078 Escherichia coli SE11 hypothetical protein YP_002291227.1 61077 D 409438 CDS YP_002291228.1 209916908 6998332 61838..62575 1 NC_011413.1 TraT protein 62575 6998332 ECSE_P2-0079 Escherichia coli SE11 TraT protein YP_002291228.1 61838 D 409438 CDS YP_002291229.1 209916909 6998333 62705..63397 1 NC_011413.1 hypothetical protein 63397 6998333 ECSE_P2-0080 Escherichia coli SE11 hypothetical protein YP_002291229.1 62705 D 409438 CDS YP_002291230.1 209916910 6998334 63404..63907 1 NC_011413.1 hypothetical protein 63907 6998334 ECSE_P2-0081 Escherichia coli SE11 hypothetical protein YP_002291230.1 63404 D 409438 CDS YP_002291231.1 209916911 6998335 63948..66134 1 NC_011413.1 TraD protein 66134 6998335 ECSE_P2-0082 Escherichia coli SE11 TraD protein YP_002291231.1 63948 D 409438 CDS YP_002291232.1 209916912 6998336 66134..71350 1 NC_011413.1 TraI protein 71350 6998336 ECSE_P2-0083 Escherichia coli SE11 TraI protein YP_002291232.1 66134 D 409438 CDS YP_002291233.1 209916913 6998337 71350..72102 1 NC_011413.1 TraX protein 72102 6998337 ECSE_P2-0084 Escherichia coli SE11 TraX protein YP_002291233.1 71350 D 409438 CDS YP_002291234.1 209916914 6998338 72176..72733 1 NC_011413.1 conjugal transfer fertility inhibition protein FinO 72733 6998338 ECSE_P2-0085 Escherichia coli SE11 conjugal transfer fertility inhibition protein FinO YP_002291234.1 72176 D 409438 CDS YP_002291235.1 209916915 6998339 72873..73085 1 NC_011413.1 hypothetical protein 73085 6998339 ECSE_P2-0086 Escherichia coli SE11 hypothetical protein YP_002291235.1 72873 D 409438 CDS YP_002291236.1 209916916 6998340 73499..74068 1 NC_011413.1 hypothetical protein 74068 6998340 ECSE_P2-0087 Escherichia coli SE11 hypothetical protein YP_002291236.1 73499 D 409438 CDS YP_002291237.1 209916917 6998341 74489..74611 1 NC_011413.1 hypothetical protein 74611 6998341 ECSE_P2-0088 Escherichia coli SE11 hypothetical protein YP_002291237.1 74489 D 409438 CDS YP_002291238.1 209916918 6998342 74781..75041 1 NC_011413.1 replication protein 75041 6998342 ECSE_P2-0089 Escherichia coli SE11 replication protein YP_002291238.1 74781 D 409438 CDS YP_002291239.1 209916919 6998343 75145..75333 1 NC_011413.1 hypothetical protein 75333 6998343 ECSE_P2-0090 Escherichia coli SE11 hypothetical protein YP_002291239.1 75145 D 409438 CDS YP_002291240.1 209916920 6998344 75334..76368 1 NC_011413.1 replication initiation protein 76368 6998344 ECSE_P2-0091 Escherichia coli SE11 replication initiation protein YP_002291240.1 75334 D 409438 CDS YP_002291241.1 209916921 6998345 77277..77546 1 NC_011413.1 hypothetical protein 77546 6998345 ECSE_P2-0092 Escherichia coli SE11 hypothetical protein YP_002291241.1 77277 D 409438 CDS YP_002291242.1 209916922 6998346 77543..77857 1 NC_011413.1 hypothetical protein 77857 6998346 ECSE_P2-0093 Escherichia coli SE11 hypothetical protein YP_002291242.1 77543 D 409438 CDS YP_002291243.1 209916923 6998347 78001..78126 1 NC_011413.1 hypothetical protein 78126 6998347 ECSE_P2-0094 Escherichia coli SE11 hypothetical protein YP_002291243.1 78001 D 409438 CDS YP_002291244.1 209916924 6998348 78269..78562 1 NC_011413.1 hypothetical protein 78562 6998348 ECSE_P2-0095 Escherichia coli SE11 hypothetical protein YP_002291244.1 78269 D 409438 CDS YP_002291245.1 209916925 6998349 complement(78744..78917) 1 NC_011413.1 hypothetical protein 78917 6998349 ECSE_P2-0096 Escherichia coli SE11 hypothetical protein YP_002291245.1 78744 R 409438 CDS YP_002291246.1 209916926 6998350 complement(79283..79498) 1 NC_011413.1 truncated transposase 79498 6998350 ECSE_P2-0097 Escherichia coli SE11 truncated transposase YP_002291246.1 79283 R 409438 CDS YP_002291247.1 209916927 6998351 complement(79437..80144) 1 NC_011413.1 truncated transposase 80144 6998351 ECSE_P2-0098 Escherichia coli SE11 truncated transposase YP_002291247.1 79437 R 409438 CDS YP_002291248.1 209916928 6998352 80727..82478 1 NC_011413.1 hypothetical protein 82478 6998352 ECSE_P2-0099 Escherichia coli SE11 hypothetical protein YP_002291248.1 80727 D 409438 CDS YP_002291249.1 209916929 6998353 complement(82680..82886) 1 NC_011413.1 hypothetical protein 82886 6998353 ECSE_P2-0100 Escherichia coli SE11 hypothetical protein YP_002291249.1 82680 R 409438 CDS YP_002291250.1 209916930 6998354 complement(82879..83352) 1 NC_011413.1 hypothetical protein 83352 6998354 ECSE_P2-0101 Escherichia coli SE11 hypothetical protein YP_002291250.1 82879 R 409438 CDS YP_002291251.1 209916931 6998355 complement(83641..84042) 1 NC_011413.1 truncated transposase 84042 6998355 ECSE_P2-0102 Escherichia coli SE11 truncated transposase YP_002291251.1 83641 R 409438 CDS YP_002291252.1 209916932 6998356 complement(84023..85540) 1 NC_011413.1 truncated transposase 85540 6998356 ECSE_P2-0103 Escherichia coli SE11 truncated transposase YP_002291252.1 84023 R 409438 CDS YP_002291253.1 209916933 6998357 complement(85614..85964) 1 NC_011413.1 truncated transposase 85964 6998357 ECSE_P2-0104 Escherichia coli SE11 truncated transposase YP_002291253.1 85614 R 409438 CDS YP_002291254.1 209916934 6998358 86251..86655 1 NC_011413.1 hypothetical protein 86655 6998358 ECSE_P2-0105 Escherichia coli SE11 hypothetical protein YP_002291254.1 86251 D 409438 CDS YP_002291255.1 209916935 6998359 86675..87628 1 NC_011413.1 putative transcriptional regulator 87628 6998359 ECSE_P2-0106 Escherichia coli SE11 putative transcriptional regulator YP_002291255.1 86675 D 409438 CDS YP_002291256.1 209916936 6998360 87699..88475 1 NC_011413.1 hypothetical protein 88475 6998360 ECSE_P2-0107 Escherichia coli SE11 hypothetical protein YP_002291256.1 87699 D 409438 CDS YP_002291257.1 209916937 6998361 88689..88994 1 NC_011413.1 truncated transposase 88994 6998361 ECSE_P2-0108 Escherichia coli SE11 truncated transposase YP_002291257.1 88689 D 409438 CDS YP_002291258.1 209916938 6998362 89352..89618 1 NC_011413.1 hypothetical protein 89618 6998362 ECSE_P2-0109 Escherichia coli SE11 hypothetical protein YP_002291258.1 89352 D 409438 CDS YP_002291259.1 209916939 6998363 89666..89989 1 NC_011413.1 hypothetical protein 89989 6998363 ECSE_P2-0110 Escherichia coli SE11 hypothetical protein YP_002291259.1 89666 D 409438 CDS YP_002291260.1 209916940 6998364 90546..90722 1 NC_011413.1 hypothetical protein 90722 6998364 ECSE_P2-0111 Escherichia coli SE11 hypothetical protein YP_002291260.1 90546 D 409438 CDS YP_002291261.1 209916941 6998365 90800..91129 1 NC_011413.1 hypothetical protein 91129 6998365 ECSE_P2-0112 Escherichia coli SE11 hypothetical protein YP_002291261.1 90800 D 409438 CDS YP_002291276.1 209917192 7003158 190..255 1 NC_011415.1 involved in threonine biosynthesis; controls the expression of the thrLABC operon; thr operon leader peptide 255 thrL 7003158 thrL Escherichia coli SE11 thr operon leader peptide YP_002291276.1 190 D 409438 CDS YP_002291277.1 209917193 6998373 336..2798 1 NC_011415.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2798 thrA 6998373 thrA Escherichia coli SE11 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002291277.1 336 D 409438 CDS YP_002291278.1 209917194 6998374 2800..3732 1 NC_011415.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 3732 6998374 ECSE_0003 Escherichia coli SE11 homoserine kinase YP_002291278.1 2800 D 409438 CDS YP_002291279.1 209917195 6998375 3733..5019 1 NC_011415.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 5019 6998375 ECSE_0004 Escherichia coli SE11 threonine synthase YP_002291279.1 3733 D 409438 CDS YP_002291280.1 209917196 6998376 5233..5529 1 NC_011415.1 hypothetical protein 5529 6998376 ECSE_0005 Escherichia coli SE11 hypothetical protein YP_002291280.1 5233 D 409438 CDS YP_002291281.1 209917197 6998377 complement(5682..6458) 1 NC_011415.1 hypothetical protein 6458 6998377 ECSE_0006 Escherichia coli SE11 hypothetical protein YP_002291281.1 5682 R 409438 CDS YP_002291282.1 209917198 6998378 complement(6528..7958) 1 NC_011415.1 putative transport protein 7958 6998378 ECSE_0007 Escherichia coli SE11 putative transport protein YP_002291282.1 6528 R 409438 CDS YP_002291283.1 209917199 6998379 8237..9190 1 NC_011415.1 transaldolase B 9190 6998379 ECSE_0008 Escherichia coli SE11 transaldolase B YP_002291283.1 8237 D 409438 CDS YP_002291284.1 209917200 6998380 9305..9892 1 NC_011415.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 9892 mogA 6998380 mogA Escherichia coli SE11 molybdenum cofactor biosynthesis protein MogA YP_002291284.1 9305 D 409438 CDS YP_002291285.1 209917201 6998381 complement(9927..10493) 1 NC_011415.1 hypothetical protein 10493 6998381 ECSE_0010 Escherichia coli SE11 hypothetical protein YP_002291285.1 9927 R 409438 CDS YP_002291286.1 209917202 6998382 complement(10642..11355) 1 NC_011415.1 hypothetical protein 11355 6998382 ECSE_0011 Escherichia coli SE11 hypothetical protein YP_002291286.1 10642 R 409438 CDS YP_002291287.1 209917203 6998383 complement(11381..11785) 1 NC_011415.1 hypothetical protein 11785 6998383 ECSE_0012 Escherichia coli SE11 hypothetical protein YP_002291287.1 11381 R 409438 CDS YP_002291288.1 209917204 6998384 12162..14078 1 NC_011415.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 14078 dnaK 6998384 dnaK Escherichia coli SE11 molecular chaperone DnaK YP_002291288.1 12162 D 409438 CDS YP_002291289.1 209917205 6998385 14167..15297 1 NC_011415.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 15297 6998385 ECSE_0014 Escherichia coli SE11 chaperone protein DnaJ YP_002291289.1 14167 D 409438 CDS YP_002291290.1 209917206 6998386 complement(15401..15610) 1 NC_011415.1 phage maintenance protein 15610 6998386 ECSE_0015 Escherichia coli SE11 phage maintenance protein YP_002291290.1 15401 R 409438 CDS YP_002291291.1 209917207 6998387 16139..17305 1 NC_011415.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 17305 nhaA 6998387 nhaA Escherichia coli SE11 pH-dependent sodium/proton antiporter YP_002291291.1 16139 D 409438 CDS YP_002291292.1 209917208 6998388 17371..18270 1 NC_011415.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC; transcriptional activator NhaR 18270 nhaR 6998388 nhaR Escherichia coli SE11 transcriptional activator NhaR YP_002291292.1 17371 D 409438 CDS YP_002291293.1 209917209 6998389 complement(18309..18734) 1 NC_011415.1 hypothetical protein 18734 6998389 ECSE_0018 Escherichia coli SE11 hypothetical protein YP_002291293.1 18309 R 409438 CDS YP_002291294.1 209917210 6998390 complement(19279..20424) 1 NC_011415.1 hypothetical protein 20424 6998390 ECSE_0019 Escherichia coli SE11 hypothetical protein YP_002291294.1 19279 R 409438 CDS YP_002291295.1 209917211 6998391 complement(20857..22278) 1 NC_011415.1 hypothetical protein 22278 6998391 ECSE_0020 Escherichia coli SE11 hypothetical protein YP_002291295.1 20857 R 409438 CDS YP_002291296.1 209917212 6998392 complement(22762..23025) 1 NC_011415.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 23025 rpsT 6998392 rpsT Escherichia coli SE11 30S ribosomal protein S20 YP_002291296.1 22762 R 409438 CDS YP_002291297.1 209917213 6998393 23128..23346 1 NC_011415.1 hypothetical protein 23346 6998393 ECSE_0022 Escherichia coli SE11 hypothetical protein YP_002291297.1 23128 D 409438 CDS YP_002291298.1 209917214 6998394 23354..24295 1 NC_011415.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 24295 6998394 ECSE_0023 Escherichia coli SE11 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002291298.1 23354 D 409438 CDS YP_002291299.1 209917215 6998395 24338..27154 1 NC_011415.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 27154 ileS 6998395 ileS Escherichia coli SE11 isoleucyl-tRNA synthetase YP_002291299.1 24338 D 409438 CDS YP_002291300.1 209917216 6998396 27154..27648 1 NC_011415.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 27648 lspA 6998396 lspA Escherichia coli SE11 lipoprotein signal peptidase YP_002291300.1 27154 D 409438 CDS YP_002291301.1 209917217 6998397 27736..28185 1 NC_011415.1 peptidyl-prolyl cis-trans isomerase 28185 6998397 ECSE_0026 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase YP_002291301.1 27736 D 409438 CDS YP_002291302.1 209917218 6998398 28187..29137 1 NC_011415.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 29137 ispH 6998398 ispH Escherichia coli SE11 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002291302.1 28187 D 409438 CDS YP_002291303.1 209917219 6998399 29203..30117 1 NC_011415.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC 30117 6998399 ECSE_0028 Escherichia coli SE11 ribonucleoside hydrolase RihC YP_002291303.1 29203 D 409438 CDS YP_002291304.1 209917220 6998400 30284..31105 1 NC_011415.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 31105 6998400 ECSE_0029 Escherichia coli SE11 dihydrodipicolinate reductase YP_002291304.1 30284 D 409438 CDS YP_002291305.1 209917221 6998401 complement(31147..31314) 1 NC_011415.1 hypothetical protein 31314 6998401 ECSE_0030 Escherichia coli SE11 hypothetical protein YP_002291305.1 31147 R 409438 CDS YP_002291306.1 209917222 6998402 31384..31521 1 NC_011415.1 hypothetical protein 31521 6998402 ECSE_0031 Escherichia coli SE11 hypothetical protein YP_002291306.1 31384 D 409438 CDS YP_002291307.1 209917223 6998403 31534..32709 1 NC_011415.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 32709 6998403 ECSE_0032 Escherichia coli SE11 carbamoyl phosphate synthase small subunit YP_002291307.1 31534 D 409438 CDS YP_002291308.1 209917224 6998404 32727..35948 1 NC_011415.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 35948 carB 6998404 carB Escherichia coli SE11 carbamoyl phosphate synthase large subunit YP_002291308.1 32727 D 409438 CDS YP_002291309.1 209917225 6998405 complement(35956..36174) 1 NC_011415.1 hypothetical protein 36174 6998405 ECSE_0034 Escherichia coli SE11 hypothetical protein YP_002291309.1 35956 R 409438 CDS YP_002291310.1 209917226 6998406 36209..36604 1 NC_011415.1 regulator of carnitine metabolism; induces the caiTABCDE and fixABCX operons; DNA-binding transcriptional activator CaiF 36604 6998406 ECSE_0035 Escherichia coli SE11 DNA-binding transcriptional activator CaiF YP_002291310.1 36209 D 409438 CDS YP_002291311.1 209917227 6998407 complement(36690..37301) 1 NC_011415.1 involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities; carnitine operon protein CaiE 37301 6998407 ECSE_0036 Escherichia coli SE11 carnitine operon protein CaiE YP_002291311.1 36690 R 409438 CDS YP_002291312.2 229598028 6998408 complement(37286..38071) 1 NC_011415.1 catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA; carnitinyl-CoA dehydratase 38071 6998408 ECSE_0037 Escherichia coli SE11 carnitinyl-CoA dehydratase YP_002291312.2 37286 R 409438 CDS YP_002291313.1 209917229 6998409 complement(38180..39748) 1 NC_011415.1 putative crotonobetaine/carnitine-CoA ligase 39748 caiC 6998409 caiC Escherichia coli SE11 putative crotonobetaine/carnitine-CoA ligase YP_002291313.1 38180 R 409438 CDS YP_002291314.1 209917230 6998410 complement(39807..41024) 1 NC_011415.1 catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA, also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine; crotonobetainyl-CoA:carnitine CoA-transferase 41024 6998410 ECSE_0039 Escherichia coli SE11 crotonobetainyl-CoA:carnitine CoA-transferase YP_002291314.1 39807 R 409438 CDS YP_002291315.1 209917231 6998411 complement(41153..42295) 1 NC_011415.1 catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA; crotonobetainyl-CoA dehydrogenase 42295 6998411 ECSE_0040 Escherichia coli SE11 crotonobetainyl-CoA dehydrogenase YP_002291315.1 41153 R 409438 CDS YP_002291316.1 209917232 6998412 complement(42326..43840) 1 NC_011415.1 catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism; L-carnitine/gamma-butyrobetaine antiporter 43840 6998412 ECSE_0041 Escherichia coli SE11 L-carnitine/gamma-butyrobetaine antiporter YP_002291316.1 42326 R 409438 CDS YP_002291317.1 209917233 6998413 44314..45084 1 NC_011415.1 required for anaerobic carnitine reduction, may act to transfer electrons to crotonobetaine reductase; putative electron transfer flavoprotein FixA 45084 6998413 ECSE_0042 Escherichia coli SE11 putative electron transfer flavoprotein FixA YP_002291317.1 44314 D 409438 CDS YP_002291318.1 209917234 6998414 45099..46040 1 NC_011415.1 involved in electron transfer during carnitine metabolism; putative electron transfer flavoprotein FixB 46040 fixB 6998414 fixB Escherichia coli SE11 putative electron transfer flavoprotein FixB YP_002291318.1 45099 D 409438 CDS YP_002291319.1 209917235 6998415 46091..47377 1 NC_011415.1 FAD/NAD(P)-binding domain; possibly part of an electron transfer system required for anaerobic carnitine reduction; putative oxidoreductase FixC 47377 6998415 ECSE_0044 Escherichia coli SE11 putative oxidoreductase FixC YP_002291319.1 46091 D 409438 CDS YP_002291320.1 209917236 6998416 47374..47661 1 NC_011415.1 putative ferredoxin 47661 6998416 ECSE_0045 Escherichia coli SE11 putative ferredoxin YP_002291320.1 47374 D 409438 CDS YP_002291321.1 209917237 6998417 47719..49050 1 NC_011415.1 putative transport protein 49050 6998417 ECSE_0046 Escherichia coli SE11 putative transport protein YP_002291321.1 47719 D 409438 CDS YP_002291322.1 209917238 6998418 49158..49688 1 NC_011415.1 Required for full activity of KefC, a potassium-proton antiporter; glutathione-regulated potassium-efflux system ancillary protein KefF 49688 6998418 ECSE_0047 Escherichia coli SE11 glutathione-regulated potassium-efflux system ancillary protein KefF YP_002291322.1 49158 D 409438 CDS YP_002291323.1 209917239 6998419 49681..51543 1 NC_011415.1 transport system that facilitates potassium-efflux; glutathione-regulated potassium-efflux system protein KefC 51543 6998419 ECSE_0048 Escherichia coli SE11 glutathione-regulated potassium-efflux system protein KefC YP_002291323.1 49681 D 409438 CDS YP_002291324.1 209917240 6998420 51735..52214 1 NC_011415.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate; dihydrofolate reductase 52214 folA 6998420 folA Escherichia coli SE11 dihydrofolate reductase YP_002291324.1 51735 D 409438 CDS YP_002291325.1 209917241 6998421 complement(52292..53134) 1 NC_011415.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 53134 apaH 6998421 apaH Escherichia coli SE11 diadenosine tetraphosphatase YP_002291325.1 52292 R 409438 CDS YP_002291326.1 209917242 6998422 complement(53141..53518) 1 NC_011415.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 53518 apaG 6998422 apaG Escherichia coli SE11 ApaG protein YP_002291326.1 53141 R 409438 CDS YP_002291327.1 209917243 6998423 complement(53521..54342) 1 NC_011415.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 54342 ksgA 6998423 ksgA Escherichia coli SE11 dimethyladenosine transferase YP_002291327.1 53521 R 409438 CDS YP_002291328.1 209917244 6998424 complement(54339..55328) 1 NC_011415.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 55328 pdxA 6998424 pdxA Escherichia coli SE11 4-hydroxythreonine-4-phosphate dehydrogenase YP_002291328.1 54339 R 409438 CDS YP_002291329.1 209917245 6998425 complement(55328..56614) 1 NC_011415.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB; peptidyl-prolyl cis-trans isomerase SurA 56614 6998425 ECSE_0054 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase SurA YP_002291329.1 55328 R 409438 CDS YP_002291330.1 209917246 6998426 complement(56667..59021) 1 NC_011415.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 59021 6998426 ECSE_0055 Escherichia coli SE11 organic solvent tolerance protein YP_002291330.1 56667 R 409438 CDS YP_002291331.1 209917247 6998427 59276..60091 1 NC_011415.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 60091 djlA 6998427 djlA Escherichia coli SE11 Dna-J like membrane chaperone protein YP_002291331.1 59276 D 409438 CDS YP_002291332.1 209917248 6998428 complement(60211..61191) 1 NC_011415.1 transposase 61191 6998428 ECSE_0057 Escherichia coli SE11 transposase YP_002291332.1 60211 R 409438 CDS YP_002291333.1 209917249 6998429 complement(61487..62146) 1 NC_011415.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs; 23S rRNA/tRNA pseudouridine synthase A 62146 6998429 ECSE_0058 Escherichia coli SE11 23S rRNA/tRNA pseudouridine synthase A YP_002291333.1 61487 R 409438 CDS YP_002291334.1 209917250 6998430 complement(62158..65064) 1 NC_011415.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 65064 6998430 ECSE_0059 Escherichia coli SE11 ATP-dependent helicase HepA YP_002291334.1 62158 R 409438 CDS YP_002291335.1 209917251 6998431 complement(65229..67580) 1 NC_011415.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 67580 6998431 ECSE_0060 Escherichia coli SE11 DNA polymerase II YP_002291335.1 65229 R 409438 CDS YP_002291336.1 209917252 6998432 complement(67655..68350) 1 NC_011415.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 68350 araD 6998432 araD Escherichia coli SE11 L-ribulose-5-phosphate 4-epimerase YP_002291336.1 67655 R 409438 CDS YP_002291337.1 209917253 6998433 complement(68519..70021) 1 NC_011415.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 70021 6998433 ECSE_0062 Escherichia coli SE11 L-arabinose isomerase YP_002291337.1 68519 R 409438 CDS YP_002291338.1 209917254 6998434 complement(70032..71732) 1 NC_011415.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; ribulokinase 71732 6998434 ECSE_0063 Escherichia coli SE11 ribulokinase YP_002291338.1 70032 R 409438 CDS YP_002291339.1 209917255 6998435 72071..72949 1 NC_011415.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 72949 6998435 ECSE_0064 Escherichia coli SE11 DNA-binding transcriptional regulator AraC YP_002291339.1 72071 D 409438 CDS YP_002291340.1 209917256 6998436 73035..73799 1 NC_011415.1 hypothetical protein 73799 6998436 ECSE_0065 Escherichia coli SE11 hypothetical protein YP_002291340.1 73035 D 409438 CDS YP_002291341.1 209917257 6998437 complement(73913..74611) 1 NC_011415.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 74611 thiQ 6998437 thiQ Escherichia coli SE11 thiamine transporter ATP-binding subunit YP_002291341.1 73913 R 409438 CDS YP_002291342.1 209917258 6998438 complement(74595..76205) 1 NC_011415.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 76205 thiP 6998438 thiP Escherichia coli SE11 thiamine transporter membrane protein YP_002291342.1 74595 R 409438 CDS YP_002291343.1 209917259 6998439 complement(76181..77164) 1 NC_011415.1 part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 77164 tbpA 6998439 tbpA Escherichia coli SE11 thiamine transporter substrate binding subunit YP_002291343.1 76181 R 409438 CDS YP_002291344.1 209917260 6998440 complement(77328..78983) 1 NC_011415.1 activates sgrS under glucose-phosphate stress conditions; transcriptional regulator SgrR 78983 6998440 ECSE_0069 Escherichia coli SE11 transcriptional regulator SgrR YP_002291344.1 77328 R 409438 CDS YP_002291345.1 209917261 6998441 79305..80483 1 NC_011415.1 putative transport protein 80483 6998441 ECSE_0070 Escherichia coli SE11 putative transport protein YP_002291345.1 79305 D 409438 CDS YP_002291346.1 209917262 6998442 complement(80532..81137) 1 NC_011415.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 81137 leuD 6998442 leuD Escherichia coli SE11 isopropylmalate isomerase small subunit YP_002291346.1 80532 R 409438 CDS YP_002291347.1 209917263 6998443 complement(81148..82548) 1 NC_011415.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 82548 6998443 ECSE_0072 Escherichia coli SE11 isopropylmalate isomerase large subunit YP_002291347.1 81148 R 409438 CDS YP_002291348.1 209917264 6998444 complement(82551..83642) 1 NC_011415.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 83642 6998444 ECSE_0073 Escherichia coli SE11 3-isopropylmalate dehydrogenase YP_002291348.1 82551 R 409438 CDS YP_002291349.1 209917265 6998445 complement(83642..85213) 1 NC_011415.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 85213 6998445 ECSE_0074 Escherichia coli SE11 2-isopropylmalate synthase YP_002291349.1 83642 R 409438 CDS YP_002291350.1 209917266 6998446 complement(85306..85392) 1 NC_011415.1 involved in attenuation control of the leuABCD operon in leucine biosynthesis; leu operon leader peptide 85392 6998446 ECSE_0075 Escherichia coli SE11 leu operon leader peptide YP_002291350.1 85306 R 409438 CDS YP_002291351.1 209917267 6998447 85853..85975 1 NC_011415.1 hypothetical protein 85975 6998447 ECSE_0076 Escherichia coli SE11 hypothetical protein YP_002291351.1 85853 D 409438 CDS YP_002291352.1 209917268 6998448 86052..86996 1 NC_011415.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 86996 leuO 6998448 leuO Escherichia coli SE11 leucine transcriptional activator YP_002291352.1 86052 D 409438 CDS YP_002291353.1 209917269 6998449 87129..87254 1 NC_011415.1 hypothetical protein 87254 6998449 ECSE_0078 Escherichia coli SE11 hypothetical protein YP_002291353.1 87129 D 409438 CDS YP_002291354.1 209917270 6998450 87314..89038 1 NC_011415.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit 89038 6998450 ECSE_0079 Escherichia coli SE11 acetolactate synthase 3 catalytic subunit YP_002291354.1 87314 D 409438 CDS YP_002291355.1 209917271 6998451 89041..89532 1 NC_011415.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 89532 ilvH 6998451 ilvH Escherichia coli SE11 acetolactate synthase 3 regulatory subunit YP_002291355.1 89041 D 409438 CDS YP_002291356.1 209917272 6998452 89584..89715 1 NC_011415.1 hypothetical protein 89715 6998452 ECSE_0081 Escherichia coli SE11 hypothetical protein YP_002291356.1 89584 D 409438 CDS YP_002291357.1 209917273 6998453 89712..90716 1 NC_011415.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 90716 6998453 ECSE_0082 Escherichia coli SE11 DNA-binding transcriptional regulator FruR YP_002291357.1 89712 D 409438 CDS YP_002291358.1 209917274 6998454 91318..91776 1 NC_011415.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 91776 6998454 ECSE_0083 Escherichia coli SE11 cell division protein MraZ YP_002291358.1 91318 D 409438 CDS YP_002291359.1 209917275 6998455 91778..92719 1 NC_011415.1 S-adenosyl-methyltransferase MraW 92719 mraW 6998455 mraW Escherichia coli SE11 S-adenosyl-methyltransferase MraW YP_002291359.1 91778 D 409438 CDS YP_002291360.1 209917276 6998456 92716..93081 1 NC_011415.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 93081 6998456 ECSE_0085 Escherichia coli SE11 cell division protein FtsL YP_002291360.1 92716 D 409438 CDS YP_002291361.1 209917277 6998457 93097..94863 1 NC_011415.1 penicillin-binding protein 3 94863 6998457 ECSE_0086 Escherichia coli SE11 penicillin-binding protein 3 YP_002291361.1 93097 D 409438 CDS YP_002291362.1 209917278 6998458 94850..96337 1 NC_011415.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 96337 murE 6998458 murE Escherichia coli SE11 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002291362.1 94850 D 409438 CDS YP_002291363.1 209917279 6998459 96334..97692 1 NC_011415.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 97692 murF 6998459 murF Escherichia coli SE11 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_002291363.1 96334 D 409438 CDS YP_002291364.1 209917280 6998460 97686..98768 1 NC_011415.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 98768 mraY 6998460 mraY Escherichia coli SE11 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002291364.1 97686 D 409438 CDS YP_002291365.1 209917281 6998461 98771..100087 1 NC_011415.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 100087 murD 6998461 murD Escherichia coli SE11 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002291365.1 98771 D 409438 CDS YP_002291366.1 209917282 6998462 100087..101331 1 NC_011415.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 101331 6998462 ECSE_0091 Escherichia coli SE11 cell division protein FtsW YP_002291366.1 100087 D 409438 CDS YP_002291367.1 209917283 6998463 101328..102395 1 NC_011415.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 102395 murG 6998463 murG Escherichia coli SE11 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002291367.1 101328 D 409438 CDS YP_002291368.1 209917284 6998464 102449..103924 1 NC_011415.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 103924 murC 6998464 murC Escherichia coli SE11 UDP-N-acetylmuramate--L-alanine ligase YP_002291368.1 102449 D 409438 CDS YP_002291369.1 209917285 6998465 103917..104837 1 NC_011415.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 104837 ddl 6998465 ddl Escherichia coli SE11 D-alanine--D-alanine ligase YP_002291369.1 103917 D 409438 CDS YP_002291370.1 209917286 6998466 104839..105669 1 NC_011415.1 involved in septum formation; cell division protein FtsQ 105669 6998466 ECSE_0095 Escherichia coli SE11 cell division protein FtsQ YP_002291370.1 104839 D 409438 CDS YP_002291371.1 209917287 6998467 105666..106928 1 NC_011415.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane; cell division protein FtsA 106928 ftsA 6998467 ftsA Escherichia coli SE11 cell division protein FtsA YP_002291371.1 105666 D 409438 CDS YP_002291372.1 209917288 6998468 106989..108140 1 NC_011415.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 108140 6998468 ECSE_0097 Escherichia coli SE11 cell division protein FtsZ YP_002291372.1 106989 D 409438 CDS YP_002291373.1 209917289 6998469 108241..109158 1 NC_011415.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 109158 lpxC 6998469 lpxC Escherichia coli SE11 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002291373.1 108241 D 409438 CDS YP_002291374.1 209917290 6998470 109314..109901 1 NC_011415.1 secM translational pause allows for the initiation of secA translation; SecA regulator SecM 109901 6998470 ECSE_0099 Escherichia coli SE11 SecA regulator SecM YP_002291374.1 109314 D 409438 CDS YP_002291375.1 209917291 6998471 109963..112668 1 NC_011415.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 112668 6998471 ECSE_0100 Escherichia coli SE11 preprotein translocase subunit SecA YP_002291375.1 109963 D 409438 CDS YP_002291376.1 209917292 6998472 112728..113117 1 NC_011415.1 nucleoside triphosphate pyrophosphohydrolase 113117 6998472 ECSE_0101 Escherichia coli SE11 nucleoside triphosphate pyrophosphohydrolase YP_002291376.1 112728 D 409438 CDS YP_002291377.1 209917293 6998473 complement(113217..113414) 1 NC_011415.1 zinc-binding protein 113414 6998473 ECSE_0102 Escherichia coli SE11 zinc-binding protein YP_002291377.1 113217 R 409438 CDS YP_002291378.1 209917294 6998474 complement(113424..114167) 1 NC_011415.1 hypothetical protein 114167 6998474 ECSE_0103 Escherichia coli SE11 hypothetical protein YP_002291378.1 113424 R 409438 CDS YP_002291379.1 209917295 6998475 complement(114167..114787) 1 NC_011415.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 114787 coaE 6998475 coaE Escherichia coli SE11 dephospho-CoA kinase YP_002291379.1 114167 R 409438 CDS YP_002291380.1 209917296 6998476 115012..116055 1 NC_011415.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate; guanosine 5'-monophosphate oxidoreductase 116055 6998476 ECSE_0105 Escherichia coli SE11 guanosine 5'-monophosphate oxidoreductase YP_002291380.1 115012 D 409438 CDS YP_002291381.1 209917297 6998477 complement(116090..117292) 1 NC_011415.1 type IV pilin biogenesis protein 117292 6998477 ECSE_0106 Escherichia coli SE11 type IV pilin biogenesis protein YP_002291381.1 116090 R 409438 CDS YP_002291382.1 209917298 6998478 complement(117282..118667) 1 NC_011415.1 hypothetical protein 118667 6998478 ECSE_0107 Escherichia coli SE11 hypothetical protein YP_002291382.1 117282 R 409438 CDS YP_002291383.1 209917299 6998479 complement(118677..119117) 1 NC_011415.1 putative major pilin subunit 119117 6998479 ECSE_0108 Escherichia coli SE11 putative major pilin subunit YP_002291383.1 118677 R 409438 CDS YP_002291384.1 209917300 6998480 complement(119320..120213) 1 NC_011415.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; quinolinate phosphoribosyltransferase 120213 6998480 ECSE_0109 Escherichia coli SE11 quinolinate phosphoribosyltransferase YP_002291384.1 119320 R 409438 CDS YP_002291385.1 209917301 6998481 120301..120852 1 NC_011415.1 N-acetyl-anhydromuranmyl-L-alanine amidase 120852 6998481 ECSE_0110 Escherichia coli SE11 N-acetyl-anhydromuranmyl-L-alanine amidase YP_002291385.1 120301 D 409438 CDS YP_002291386.1 209917302 6998482 120849..121703 1 NC_011415.1 involved in regulation of beta-lactamase; putative signaling protein; regulatory protein AmpE 121703 6998482 ECSE_0111 Escherichia coli SE11 regulatory protein AmpE YP_002291386.1 120849 D 409438 CDS YP_002291387.1 209917303 6998483 complement(121746..123119) 1 NC_011415.1 aromatic amino acid transporter 123119 6998483 ECSE_0112 Escherichia coli SE11 aromatic amino acid transporter YP_002291387.1 121746 R 409438 CDS YP_002291388.1 209917304 6998484 123660..124424 1 NC_011415.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex; transcriptional regulator PdhR 124424 pdhR 6998484 pdhR Escherichia coli SE11 transcriptional regulator PdhR YP_002291388.1 123660 D 409438 CDS YP_002291389.1 209917305 6998485 124585..127248 1 NC_011415.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 127248 aceE 6998485 aceE Escherichia coli SE11 pyruvate dehydrogenase subunit E1 YP_002291389.1 124585 D 409438 CDS YP_002291390.1 209917306 6998486 127263..129155 1 NC_011415.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 129155 aceF 6998486 aceF Escherichia coli SE11 dihydrolipoamide acetyltransferase YP_002291390.1 127263 D 409438 CDS YP_002291391.1 209917307 6998487 129480..130904 1 NC_011415.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 130904 6998487 ECSE_0116 Escherichia coli SE11 dihydrolipoamide dehydrogenase YP_002291391.1 129480 D 409438 CDS YP_002291392.1 209917308 6998488 complement(130975..132726) 1 NC_011415.1 hypothetical protein 132726 6998488 ECSE_0117 Escherichia coli SE11 hypothetical protein YP_002291392.1 130975 R 409438 CDS YP_002291393.1 209917309 6998489 133087..135684 1 NC_011415.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 135684 6998489 ECSE_0118 Escherichia coli SE11 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002291393.1 133087 D 409438 CDS YP_002291394.1 209917310 6998490 135859..136221 1 NC_011415.1 hypothetical protein 136221 6998490 ECSE_0119 Escherichia coli SE11 hypothetical protein YP_002291394.1 135859 D 409438 CDS YP_002291395.1 209917311 6998491 complement(136259..137053) 1 NC_011415.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 137053 6998491 ECSE_0120 Escherichia coli SE11 S-adenosylmethionine decarboxylase YP_002291395.1 136259 R 409438 CDS YP_002291396.1 209917312 6998492 complement(137069..137935) 1 NC_011415.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 137935 6998492 ECSE_0121 Escherichia coli SE11 spermidine synthase YP_002291396.1 137069 R 409438 CDS YP_002291397.1 209917313 6998493 complement(138041..138511) 1 NC_011415.1 hypothetical protein 138511 6998493 ECSE_0122 Escherichia coli SE11 hypothetical protein YP_002291397.1 138041 R 409438 CDS YP_002291398.1 209917314 6998494 138554..140104 1 NC_011415.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification; multicopper oxidase 140104 6998494 ECSE_0123 Escherichia coli SE11 multicopper oxidase YP_002291398.1 138554 D 409438 CDS YP_002291399.1 209917315 6998495 complement(140151..142541) 1 NC_011415.1 glucose dehydrogenase 142541 6998495 ECSE_0124 Escherichia coli SE11 glucose dehydrogenase YP_002291399.1 140151 R 409438 CDS YP_002291400.1 209917316 6998496 142735..143283 1 NC_011415.1 hypoxanthine phosphoribosyltransferase 143283 6998496 ECSE_0125 Escherichia coli SE11 hypoxanthine phosphoribosyltransferase YP_002291400.1 142735 D 409438 CDS YP_002291401.1 209917317 6998497 complement(143324..143986) 1 NC_011415.1 catalyzes the interconversion of bicarbonate and carbon dioxide; carbonic anhydrase 143986 6998497 ECSE_0126 Escherichia coli SE11 carbonic anhydrase YP_002291401.1 143324 R 409438 CDS YP_002291402.1 209917318 6998498 144095..145021 1 NC_011415.1 ABC transporter ATP-binding protein 145021 6998498 ECSE_0127 Escherichia coli SE11 ABC transporter ATP-binding protein YP_002291402.1 144095 D 409438 CDS YP_002291403.1 209917319 6998499 145018..145788 1 NC_011415.1 ABC transporter permease 145788 6998499 ECSE_0128 Escherichia coli SE11 ABC transporter permease YP_002291403.1 145018 D 409438 CDS YP_002291404.1 209917320 6998500 145893..146333 1 NC_011415.1 putative PTS system IIB component 146333 6998500 ECSE_0129 Escherichia coli SE11 putative PTS system IIB component YP_002291404.1 145893 D 409438 CDS YP_002291405.1 209917321 6998501 146397..147626 1 NC_011415.1 hypothetical protein 147626 6998501 ECSE_0130 Escherichia coli SE11 hypothetical protein YP_002291405.1 146397 D 409438 CDS YP_002291406.1 209917322 6998502 complement(147630..148010) 1 NC_011415.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 148010 6998502 ECSE_0131 Escherichia coli SE11 aspartate alpha-decarboxylase YP_002291406.1 147630 R 409438 CDS YP_002291407.1 209917323 6998503 148284..149186 1 NC_011415.1 hypothetical protein 149186 6998503 ECSE_0132 Escherichia coli SE11 hypothetical protein YP_002291407.1 148284 D 409438 CDS YP_002291408.1 209917324 6998504 complement(149260..150111) 1 NC_011415.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 150111 panC 6998504 panC Escherichia coli SE11 pantoate--beta-alanine ligase YP_002291408.1 149260 R 409438 CDS YP_002291409.1 209917325 6998505 complement(150123..150917) 1 NC_011415.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 150917 panB 6998505 panB Escherichia coli SE11 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002291409.1 150123 R 409438 CDS YP_002291410.1 209917326 6998506 complement(151030..152304) 1 NC_011415.1 putative fimbrial-like adhesin protein 152304 6998506 ECSE_0135 Escherichia coli SE11 putative fimbrial-like adhesin protein YP_002291410.1 151030 R 409438 CDS YP_002291411.1 209917327 6998507 complement(152357..152953) 1 NC_011415.1 putative fimbrial protein 152953 6998507 ECSE_0136 Escherichia coli SE11 putative fimbrial protein YP_002291411.1 152357 R 409438 CDS YP_002291412.1 209917328 6998508 complement(152980..153582) 1 NC_011415.1 putative fimbrial protein 153582 6998508 ECSE_0137 Escherichia coli SE11 putative fimbrial protein YP_002291412.1 152980 R 409438 CDS YP_002291413.1 209917329 6998509 complement(153597..154166) 1 NC_011415.1 putative fimbrial protein 154166 6998509 ECSE_0138 Escherichia coli SE11 putative fimbrial protein YP_002291413.1 153597 R 409438 CDS YP_002291414.1 209917330 6998510 complement(154183..156783) 1 NC_011415.1 similar to the fimbrial usher protein PapC; putative outer membrane usher protein 156783 6998510 ECSE_0139 Escherichia coli SE11 putative outer membrane usher protein YP_002291414.1 154183 R 409438 CDS YP_002291415.1 209917331 6998511 complement(156818..157558) 1 NC_011415.1 putative chaperone protein EcpD 157558 6998511 ECSE_0140 Escherichia coli SE11 putative chaperone protein EcpD YP_002291415.1 156818 R 409438 CDS YP_002291416.1 209917332 6998512 complement(157663..158247) 1 NC_011415.1 putative fimbrial protein 158247 6998512 ECSE_0141 Escherichia coli SE11 putative fimbrial protein YP_002291416.1 157663 R 409438 CDS YP_002291417.1 209917333 6998513 complement(158617..159096) 1 NC_011415.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 159096 6998513 ECSE_0142 Escherichia coli SE11 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase YP_002291417.1 158617 R 409438 CDS YP_002291418.1 209917334 6998514 complement(159093..160511) 1 NC_011415.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's; poly(A) polymerase I 160511 pcnB 6998514 pcnB Escherichia coli SE11 poly(A) polymerase I YP_002291418.1 159093 R 409438 CDS YP_002291419.1 209917335 6998515 complement(160550..161476) 1 NC_011415.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 161476 6998515 ECSE_0144 Escherichia coli SE11 glutamyl-Q tRNA(Asp) synthetase YP_002291419.1 160550 R 409438 CDS YP_002291420.1 209917336 6998516 complement(161513..161968) 1 NC_011415.1 RNA polymerase-binding transcription factor 161968 dksA 6998516 dksA Escherichia coli SE11 RNA polymerase-binding transcription factor YP_002291420.1 161513 R 409438 CDS YP_002291421.1 209917337 6998517 complement(162146..162850) 1 NC_011415.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 162850 6998517 ECSE_0146 Escherichia coli SE11 sugar fermentation stimulation protein A YP_002291421.1 162146 R 409438 CDS YP_002291422.1 209917338 6998518 complement(162865..163395) 1 NC_011415.1 2'-5' RNA ligase 163395 6998518 ECSE_0147 Escherichia coli SE11 2'-5' RNA ligase YP_002291422.1 162865 R 409438 CDS YP_002291423.1 209917339 6998519 163424..165898 1 NC_011415.1 similar in sequence to the ATP-dependent RNA helicase HrpA; ATP-dependent RNA helicase HrpB 165898 6998519 ECSE_0148 Escherichia coli SE11 ATP-dependent RNA helicase HrpB YP_002291423.1 163424 D 409438 CDS YP_002291424.1 209917340 6998520 166094..168628 1 NC_011415.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 168628 mrcB 6998520 mrcB Escherichia coli SE11 penicillin-binding protein 1b YP_002291424.1 166094 D 409438 CDS YP_002291425.1 209917341 6998521 complement(168693..168827) 1 NC_011415.1 hypothetical protein 168827 6998521 ECSE_0150 Escherichia coli SE11 hypothetical protein YP_002291425.1 168693 R 409438 CDS YP_002291426.1 209917342 6998522 168848..171091 1 NC_011415.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein; ferrichrome outer membrane transporter 171091 6998522 ECSE_0151 Escherichia coli SE11 ferrichrome outer membrane transporter YP_002291426.1 168848 D 409438 CDS YP_002291427.1 209917343 6998523 171142..171939 1 NC_011415.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; iron-hydroxamate transporter ATP-binding subunit 171939 6998523 ECSE_0152 Escherichia coli SE11 iron-hydroxamate transporter ATP-binding subunit YP_002291427.1 171142 D 409438 CDS YP_002291428.1 209917344 6998524 171939..172829 1 NC_011415.1 Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores; iron-hydroxamate transporter substrate-binding subunit 172829 6998524 ECSE_0153 Escherichia coli SE11 iron-hydroxamate transporter substrate-binding subunit YP_002291428.1 171939 D 409438 CDS YP_002291429.1 209917345 6998525 172826..174808 1 NC_011415.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit 174808 6998525 ECSE_0154 Escherichia coli SE11 iron-hydroxamate transporter permease subunit YP_002291429.1 172826 D 409438 CDS YP_002291430.1 209917346 6998526 complement(174843..176123) 1 NC_011415.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 176123 6998526 ECSE_0155 Escherichia coli SE11 glutamate-1-semialdehyde aminotransferase YP_002291430.1 174843 R 409438 CDS YP_002291431.1 209917347 6998527 176348..177769 1 NC_011415.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation; chloride channel protein 177769 6998527 ECSE_0156 Escherichia coli SE11 chloride channel protein YP_002291431.1 176348 D 409438 CDS YP_002291432.1 209917348 6998528 177851..178195 1 NC_011415.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 178195 6998528 ECSE_0157 Escherichia coli SE11 iron-sulfur cluster insertion protein ErpA YP_002291432.1 177851 D 409438 CDS YP_002291433.1 209917349 6998529 complement(178242..178865) 1 NC_011415.1 hypothetical protein 178865 6998529 ECSE_0158 Escherichia coli SE11 hypothetical protein YP_002291433.1 178242 R 409438 CDS YP_002291434.1 209917350 6998530 complement(178903..179703) 1 NC_011415.1 solute binding component of the vitamin B12 transport system BtuCDF; vitamin B12-transporter protein BtuF 179703 6998530 ECSE_0159 Escherichia coli SE11 vitamin B12-transporter protein BtuF YP_002291434.1 178903 R 409438 CDS YP_002291435.1 209917351 6998531 complement(179696..180394) 1 NC_011415.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 180394 6998531 ECSE_0160 Escherichia coli SE11 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002291435.1 179696 R 409438 CDS YP_002291436.1 209917352 6998532 180478..181995 1 NC_011415.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 181995 dgt 6998532 dgt Escherichia coli SE11 deoxyguanosinetriphosphate triphosphohydrolase YP_002291436.1 180478 D 409438 CDS YP_002291437.1 209917353 6998533 182125..183549 1 NC_011415.1 protease Do; required at high temperature; degrades damaged proteins; serine endoprotease 183549 6998533 ECSE_0162 Escherichia coli SE11 serine endoprotease YP_002291437.1 182125 D 409438 CDS YP_002291438.1 209917354 6998534 183704..184861 1 NC_011415.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization; carbohydrate diacid transcriptional activator CdaR 184861 6998534 ECSE_0163 Escherichia coli SE11 carbohydrate diacid transcriptional activator CdaR YP_002291438.1 183704 D 409438 CDS YP_002291439.1 209917355 6998535 complement(184950..185336) 1 NC_011415.1 hypothetical protein 185336 6998535 ECSE_0164 Escherichia coli SE11 hypothetical protein YP_002291439.1 184950 R 409438 CDS YP_002291440.1 209917356 6998536 complement(185648..186472) 1 NC_011415.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 186472 dapD 6998536 dapD Escherichia coli SE11 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002291440.1 185648 R 409438 CDS YP_002291441.1 209917357 6998537 complement(186503..189175) 1 NC_011415.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 189175 6998537 ECSE_0166 Escherichia coli SE11 PII uridylyl-transferase YP_002291441.1 186503 R 409438 CDS YP_002291442.1 209917358 6998538 complement(189237..190031) 1 NC_011415.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 190031 6998538 ECSE_0167 Escherichia coli SE11 methionine aminopeptidase YP_002291442.1 189237 R 409438 CDS YP_002291443.1 209917359 6998539 190399..191124 1 NC_011415.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 191124 rpsB 6998539 rpsB Escherichia coli SE11 30S ribosomal protein S2 YP_002291443.1 190399 D 409438 CDS YP_002291444.1 209917360 6998540 191382..192233 1 NC_011415.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 192233 tsf 6998540 tsf Escherichia coli SE11 elongation factor Ts YP_002291444.1 191382 D 409438 CDS YP_002291445.1 209917361 6998541 192380..193105 1 NC_011415.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 193105 pyrH 6998541 pyrH Escherichia coli SE11 uridylate kinase YP_002291445.1 192380 D 409438 CDS YP_002291446.1 209917362 6998542 193397..193954 1 NC_011415.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 193954 frr 6998542 frr Escherichia coli SE11 ribosome recycling factor YP_002291446.1 193397 D 409438 CDS YP_002291447.1 209917363 6998543 194046..195242 1 NC_011415.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 195242 6998543 ECSE_0172 Escherichia coli SE11 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002291447.1 194046 D 409438 CDS YP_002291448.1 209917364 6998544 195431..196189 1 NC_011415.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 196189 6998544 ECSE_0173 Escherichia coli SE11 undecaprenyl pyrophosphate synthase YP_002291448.1 195431 D 409438 CDS YP_002291449.1 209917365 6998545 196202..197059 1 NC_011415.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate; CDP-diglyceride synthase 197059 cdsA 6998545 cdsA Escherichia coli SE11 CDP-diglyceride synthase YP_002291449.1 196202 D 409438 CDS YP_002291450.1 209917366 6998546 197071..198423 1 NC_011415.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response; zinc metallopeptidase RseP 198423 6998546 ECSE_0175 Escherichia coli SE11 zinc metallopeptidase RseP YP_002291450.1 197071 D 409438 CDS YP_002291451.1 209917367 6998547 198453..200885 1 NC_011415.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 200885 6998547 ECSE_0176 Escherichia coli SE11 outer membrane protein assembly factor YaeT YP_002291451.1 198453 D 409438 CDS YP_002291452.1 209917368 6998548 201007..201492 1 NC_011415.1 periplasmic chaperone 201492 6998548 ECSE_0177 Escherichia coli SE11 periplasmic chaperone YP_002291452.1 201007 D 409438 CDS YP_002291453.1 209917369 6998549 201496..202521 1 NC_011415.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 202521 lpxD 6998549 lpxD Escherichia coli SE11 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002291453.1 201496 D 409438 CDS YP_002291454.1 209917370 6998550 202626..203081 1 NC_011415.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 203081 fabZ 6998550 fabZ Escherichia coli SE11 (3R)-hydroxymyristoyl-ACP dehydratase YP_002291454.1 202626 D 409438 CDS YP_002291455.1 209917371 6998551 203085..203873 1 NC_011415.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 203873 6998551 ECSE_0180 Escherichia coli SE11 UDP-N-acetylglucosamine acyltransferase YP_002291455.1 203085 D 409438 CDS YP_002291456.1 209917372 6998552 203873..205021 1 NC_011415.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 205021 lpxB 6998552 lpxB Escherichia coli SE11 lipid-A-disaccharide synthase YP_002291456.1 203873 D 409438 CDS YP_002291457.1 209917373 6998553 205018..205614 1 NC_011415.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 205614 rnhB 6998553 rnhB Escherichia coli SE11 ribonuclease HII YP_002291457.1 205018 D 409438 CDS YP_002291458.1 209917374 6998554 205651..209133 1 NC_011415.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 209133 dnaE 6998554 dnaE Escherichia coli SE11 DNA polymerase III subunit alpha YP_002291458.1 205651 D 409438 CDS YP_002291459.1 209917375 6998555 209146..210105 1 NC_011415.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 210105 6998555 ECSE_0184 Escherichia coli SE11 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002291459.1 209146 D 409438 CDS YP_002291460.1 209917376 6998556 210204..212345 1 NC_011415.1 lysine decarboxylase 212345 6998556 ECSE_0185 Escherichia coli SE11 lysine decarboxylase YP_002291460.1 210204 D 409438 CDS YP_002291461.1 209917377 6998557 212402..212791 1 NC_011415.1 hypothetical protein 212791 6998557 ECSE_0186 Escherichia coli SE11 hypothetical protein YP_002291461.1 212402 D 409438 CDS YP_002291462.1 209917378 6998558 212856..214154 1 NC_011415.1 Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase; tRNA(Ile)-lysidine synthetase 214154 tilS 6998558 tilS Escherichia coli SE11 tRNA(Ile)-lysidine synthetase YP_002291462.1 212856 D 409438 CDS YP_002291463.1 209917379 6998559 complement(214203..214457) 1 NC_011415.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination; Rho-binding antiterminator 214457 6998559 ECSE_0188 Escherichia coli SE11 Rho-binding antiterminator YP_002291463.1 214203 R 409438 CDS YP_002291464.1 209917380 6998560 complement(214450..214650) 1 NC_011415.1 hypothetical protein 214650 6998560 ECSE_0189 Escherichia coli SE11 hypothetical protein YP_002291464.1 214450 R 409438 CDS YP_002291465.1 209917381 6998561 214816..215361 1 NC_011415.1 hypothetical protein 215361 6998561 ECSE_0190 Escherichia coli SE11 hypothetical protein YP_002291465.1 214816 D 409438 CDS YP_002291466.1 209917382 6998562 215358..215780 1 NC_011415.1 peptidyl-tRNA hydrolase domain protein 215780 6998562 ECSE_0191 Escherichia coli SE11 peptidyl-tRNA hydrolase domain protein YP_002291466.1 215358 D 409438 CDS YP_002291467.1 209917383 6998563 215794..216504 1 NC_011415.1 lipoprotein involved with copper homeostasis and adhesion 216504 6998563 ECSE_0192 Escherichia coli SE11 lipoprotein involved with copper homeostasis and adhesion YP_002291467.1 215794 D 409438 CDS YP_002291468.1 209917384 6998564 216754..217734 1 NC_011415.1 transposase 217734 6998564 ECSE_0193 Escherichia coli SE11 transposase YP_002291468.1 216754 D 409438 CDS YP_002291469.1 209917385 6998565 complement(217938..218249) 1 NC_011415.1 hypothetical protein 218249 6998565 ECSE_0194 Escherichia coli SE11 hypothetical protein YP_002291469.1 217938 R 409438 CDS YP_002291470.1 209917386 6998566 complement(218180..218761) 1 NC_011415.1 hypothetical protein 218761 6998566 ECSE_0195 Escherichia coli SE11 hypothetical protein YP_002291470.1 218180 R 409438 CDS YP_002291471.1 209917387 6998567 complement(218815..220533) 1 NC_011415.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 220533 6998567 ECSE_0196 Escherichia coli SE11 prolyl-tRNA synthetase YP_002291471.1 218815 R 409438 CDS YP_002291472.1 209917388 6998568 complement(220645..221352) 1 NC_011415.1 hypothetical protein 221352 6998568 ECSE_0197 Escherichia coli SE11 hypothetical protein YP_002291472.1 220645 R 409438 CDS YP_002291473.1 209917389 6998569 complement(221349..221753) 1 NC_011415.1 outer membrane lipoprotein 221753 rcsF 6998569 rcsF Escherichia coli SE11 outer membrane lipoprotein YP_002291473.1 221349 R 409438 CDS YP_002291474.1 209917390 6998570 complement(221871..222686) 1 NC_011415.1 DL-methionine transporter substrate-binding subunit 222686 metQ 6998570 metQ Escherichia coli SE11 DL-methionine transporter substrate-binding subunit YP_002291474.1 221871 R 409438 CDS YP_002291475.1 209917391 6998571 complement(222726..223379) 1 NC_011415.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit 223379 6998571 ECSE_0200 Escherichia coli SE11 DL-methionine transporter permease subunit YP_002291475.1 222726 R 409438 CDS YP_002291476.1 209917392 6998572 complement(223372..224403) 1 NC_011415.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 224403 metN 6998572 metN Escherichia coli SE11 DL-methionine transporter ATP-binding subunit YP_002291476.1 223372 R 409438 CDS YP_002291477.1 209917393 6998573 224591..225163 1 NC_011415.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 225163 6998573 ECSE_0202 Escherichia coli SE11 D,D-heptose 1,7-bisphosphate phosphatase YP_002291477.1 224591 D 409438 CDS YP_002291478.1 209917394 7003074 230922..231725 1 NC_011415.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; 2,5-diketo-D-gluconate reductase B 231725 dkgB 7003074 dkgB Escherichia coli SE11 2,5-diketo-D-gluconate reductase B YP_002291478.1 230922 D 409438 CDS YP_002291479.1 209917395 6998575 complement(231722..232636) 1 NC_011415.1 putative transcriptional regulator 232636 6998575 ECSE_0204 Escherichia coli SE11 putative transcriptional regulator YP_002291479.1 231722 R 409438 CDS YP_002291480.1 209917396 6998576 232898..233677 1 NC_011415.1 hypothetical protein 233677 6998576 ECSE_0205 Escherichia coli SE11 hypothetical protein YP_002291480.1 232898 D 409438 CDS YP_002291481.1 209917397 6998577 233755..234525 1 NC_011415.1 putative biotin synthesis protein 234525 6998577 ECSE_0206 Escherichia coli SE11 putative biotin synthesis protein YP_002291481.1 233755 D 409438 CDS YP_002291482.1 209917398 6998578 complement(234573..235931) 1 NC_011415.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall; membrane-bound lytic murein transglycosylase D 235931 mltD 6998578 mltD Escherichia coli SE11 membrane-bound lytic murein transglycosylase D YP_002291482.1 234573 R 409438 CDS YP_002291483.1 209917399 6998579 complement(236003..236758) 1 NC_011415.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione; hydroxyacylglutathione hydrolase 236758 6998579 ECSE_0208 Escherichia coli SE11 hydroxyacylglutathione hydrolase YP_002291483.1 236003 R 409438 CDS YP_002291484.1 209917400 6998580 236792..237514 1 NC_011415.1 hypothetical protein 237514 6998580 ECSE_0209 Escherichia coli SE11 hypothetical protein YP_002291484.1 236792 D 409438 CDS YP_002291485.1 209917401 6998581 complement(237511..237978) 1 NC_011415.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 237978 rnhA 6998581 rnhA Escherichia coli SE11 ribonuclease H YP_002291485.1 237511 R 409438 CDS YP_002291486.1 209917402 6998582 238043..238774 1 NC_011415.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 238774 6998582 ECSE_0211 Escherichia coli SE11 DNA polymerase III subunit epsilon YP_002291486.1 238043 D 409438 CDS YP_002291487.1 209917403 7003075 239314..240099 1 NC_011415.1 putative aminopeptidase 240099 7003075 ECSE_0212 Escherichia coli SE11 putative aminopeptidase YP_002291487.1 239314 D 409438 CDS YP_002291488.1 209917404 6998584 complement(240725..241639) 1 NC_011415.1 hypothetical protein 241639 6998584 ECSE_0213 Escherichia coli SE11 hypothetical protein YP_002291488.1 240725 R 409438 CDS YP_002291489.1 209917405 6998585 complement(241683..242165) 1 NC_011415.1 hypothetical protein 242165 6998585 ECSE_0214 Escherichia coli SE11 hypothetical protein YP_002291489.1 241683 R 409438 CDS YP_002291490.1 209917406 6998586 complement(242189..243541) 1 NC_011415.1 hypothetical protein 243541 6998586 ECSE_0215 Escherichia coli SE11 hypothetical protein YP_002291490.1 242189 R 409438 CDS YP_002291491.1 209917407 6998587 complement(243552..247076) 1 NC_011415.1 hypothetical protein 247076 6998587 ECSE_0216 Escherichia coli SE11 hypothetical protein YP_002291491.1 243552 R 409438 CDS YP_002291492.1 209917408 6998588 complement(247095..248507) 1 NC_011415.1 hypothetical protein 248507 6998588 ECSE_0217 Escherichia coli SE11 hypothetical protein YP_002291492.1 247095 R 409438 CDS YP_002291493.1 209917409 6998589 complement(248512..249204) 1 NC_011415.1 hypothetical protein 249204 6998589 ECSE_0218 Escherichia coli SE11 hypothetical protein YP_002291493.1 248512 R 409438 CDS YP_002291494.1 209917410 6998590 complement(249252..252215) 1 NC_011415.1 ATP-dependent chaperone protein ClpB 252215 6998590 ECSE_0219 Escherichia coli SE11 ATP-dependent chaperone protein ClpB YP_002291494.1 249252 R 409438 CDS YP_002291495.1 209917411 6998591 complement(252224..252985) 1 NC_011415.1 hypothetical protein 252985 6998591 ECSE_0220 Escherichia coli SE11 hypothetical protein YP_002291495.1 252224 R 409438 CDS YP_002291496.1 209917412 6998592 complement(252990..254321) 1 NC_011415.1 hypothetical protein 254321 6998592 ECSE_0221 Escherichia coli SE11 hypothetical protein YP_002291496.1 252990 R 409438 CDS YP_002291497.1 209917413 6998593 complement(254324..254848) 1 NC_011415.1 putative lipoprotein 254848 6998593 ECSE_0222 Escherichia coli SE11 putative lipoprotein YP_002291497.1 254324 R 409438 CDS YP_002291498.1 209917414 6998594 complement(254845..256125) 1 NC_011415.1 hypothetical protein 256125 6998594 ECSE_0223 Escherichia coli SE11 hypothetical protein YP_002291498.1 254845 R 409438 CDS YP_002291499.1 209917415 6998595 complement(256150..257232) 1 NC_011415.1 hypothetical protein 257232 6998595 ECSE_0224 Escherichia coli SE11 hypothetical protein YP_002291499.1 256150 R 409438 CDS YP_002291500.1 209917416 6998596 complement(257196..259046) 1 NC_011415.1 hypothetical protein 259046 6998596 ECSE_0225 Escherichia coli SE11 hypothetical protein YP_002291500.1 257196 R 409438 CDS YP_002291501.1 209917417 6998597 complement(259050..259463) 1 NC_011415.1 hypothetical protein 259463 6998597 ECSE_0226 Escherichia coli SE11 hypothetical protein YP_002291501.1 259050 R 409438 CDS YP_002291502.1 209917418 6998598 complement(259470..260945) 1 NC_011415.1 hypothetical protein 260945 6998598 ECSE_0227 Escherichia coli SE11 hypothetical protein YP_002291502.1 259470 R 409438 CDS YP_002291503.1 209917419 6998599 complement(260996..261220) 1 NC_011415.1 hypothetical protein 261220 6998599 ECSE_0228 Escherichia coli SE11 hypothetical protein YP_002291503.1 260996 R 409438 CDS YP_002291504.1 209917420 6998600 complement(261255..261755) 1 NC_011415.1 hypothetical protein 261755 6998600 ECSE_0229 Escherichia coli SE11 hypothetical protein YP_002291504.1 261255 R 409438 CDS YP_002291505.1 209917421 6998601 261770..261898 1 NC_011415.1 hypothetical protein 261898 6998601 ECSE_0230 Escherichia coli SE11 hypothetical protein YP_002291505.1 261770 D 409438 CDS YP_002291506.1 209917422 6998602 262182..262325 1 NC_011415.1 hypothetical protein 262325 6998602 ECSE_0231 Escherichia coli SE11 hypothetical protein YP_002291506.1 262182 D 409438 CDS YP_002291507.1 209917423 6998603 262452..262970 1 NC_011415.1 hypothetical protein 262970 6998603 ECSE_0232 Escherichia coli SE11 hypothetical protein YP_002291507.1 262452 D 409438 CDS YP_002291508.1 209917424 6998604 263180..265321 1 NC_011415.1 hypothetical protein 265321 6998604 ECSE_0233 Escherichia coli SE11 hypothetical protein YP_002291508.1 263180 D 409438 CDS YP_002291509.1 209917425 6998605 265397..269632 1 NC_011415.1 Rhs core protein 269632 6998605 ECSE_0234 Escherichia coli SE11 Rhs core protein YP_002291509.1 265397 D 409438 CDS YP_002291510.1 209917426 6998606 269616..270098 1 NC_011415.1 hypothetical protein 270098 6998606 ECSE_0235 Escherichia coli SE11 hypothetical protein YP_002291510.1 269616 D 409438 CDS YP_002291511.1 209917427 6998607 270279..270749 1 NC_011415.1 hypothetical protein 270749 6998607 ECSE_0236 Escherichia coli SE11 hypothetical protein YP_002291511.1 270279 D 409438 CDS YP_002291512.1 209917428 6998608 270750..271025 1 NC_011415.1 hypothetical protein 271025 6998608 ECSE_0237 Escherichia coli SE11 hypothetical protein YP_002291512.1 270750 D 409438 CDS YP_002291513.1 209917429 6998609 271069..271269 1 NC_011415.1 hypothetical protein 271269 6998609 ECSE_0238 Escherichia coli SE11 hypothetical protein YP_002291513.1 271069 D 409438 CDS YP_002291514.1 209917430 6998610 271583..272644 1 NC_011415.1 hypothetical protein 272644 6998610 ECSE_0239 Escherichia coli SE11 hypothetical protein YP_002291514.1 271583 D 409438 CDS YP_002291515.1 209917431 6998611 complement(272686..273456) 1 NC_011415.1 hypothetical protein 273456 6998611 ECSE_0240 Escherichia coli SE11 hypothetical protein YP_002291515.1 272686 R 409438 CDS YP_002291516.1 209917432 6998612 273610..274083 1 NC_011415.1 inactivates vertebrate C-type lysozyme; C-lysozyme inhibitor 274083 6998612 ECSE_0241 Escherichia coli SE11 C-lysozyme inhibitor YP_002291516.1 273610 D 409438 CDS YP_002291517.1 209917433 6998613 complement(274126..276606) 1 NC_011415.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 276606 fadE 6998613 fadE Escherichia coli SE11 acyl-CoA dehydrogenase YP_002291517.1 274126 R 409438 CDS YP_002291518.1 209917434 6998614 276810..277388 1 NC_011415.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 277388 gmhA 6998614 gmhA Escherichia coli SE11 phosphoheptose isomerase YP_002291518.1 276810 D 409438 CDS YP_002291519.1 209917435 6998615 277594..278361 1 NC_011415.1 putative amidotransferase 278361 6998615 ECSE_0244 Escherichia coli SE11 putative amidotransferase YP_002291519.1 277594 D 409438 CDS YP_002291520.1 209917436 6998616 complement(278332..279072) 1 NC_011415.1 hypothetical protein 279072 6998616 ECSE_0245 Escherichia coli SE11 hypothetical protein YP_002291520.1 278332 R 409438 CDS YP_002291521.1 209917437 6998617 complement(279228..279506) 1 NC_011415.1 hypothetical protein 279506 6998617 ECSE_0246 Escherichia coli SE11 hypothetical protein YP_002291521.1 279228 R 409438 CDS YP_002291522.1 209917438 6998618 complement(279509..279769) 1 NC_011415.1 DNA-damage-inducible protein J 279769 6998618 ECSE_0247 Escherichia coli SE11 DNA-damage-inducible protein J YP_002291522.1 279509 R 409438 CDS YP_002291523.1 209917439 6998619 279979..280728 1 NC_011415.1 putative lipoprotein 280728 6998619 ECSE_0248 Escherichia coli SE11 putative lipoprotein YP_002291523.1 279979 D 409438 CDS YP_002291524.1 209917440 6998620 complement(280785..281141) 1 NC_011415.1 hypothetical protein 281141 6998620 ECSE_0249 Escherichia coli SE11 hypothetical protein YP_002291524.1 280785 R 409438 CDS YP_002291525.1 209917441 6998621 complement(281134..281433) 1 NC_011415.1 hypothetical protein 281433 6998621 ECSE_0250 Escherichia coli SE11 hypothetical protein YP_002291525.1 281134 R 409438 CDS YP_002291526.1 209917442 6998622 complement(281517..283256) 1 NC_011415.1 flagellar biosynthetic protein 283256 6998622 ECSE_0252 Escherichia coli SE11 flagellar biosynthetic protein YP_002291526.1 281517 R 409438 CDS YP_002291527.1 209917443 6998624 283198..283986 1 NC_011415.1 hypothetical protein 283986 6998624 ECSE_0251 Escherichia coli SE11 hypothetical protein YP_002291527.1 283198 D 409438 CDS YP_002291528.1 209917444 6998623 284057..285112 1 NC_011415.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 285112 6998623 ECSE_0253 Escherichia coli SE11 DNA polymerase IV YP_002291528.1 284057 D 409438 CDS YP_002291529.1 209917445 6998625 285109..285561 1 NC_011415.1 hypothetical protein 285561 6998625 ECSE_0254 Escherichia coli SE11 hypothetical protein YP_002291529.1 285109 D 409438 CDS YP_002291530.1 209917446 6998626 285807..286946 1 NC_011415.1 mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY; hypothetical protein 286946 6998626 ECSE_0255 Escherichia coli SE11 hypothetical protein YP_002291530.1 285807 D 409438 CDS YP_002291531.1 209917447 6998627 286949..287557 1 NC_011415.1 similar to release factor 1 and 2; peptide chain release factor-like protein 287557 prfH 6998627 prfH Escherichia coli SE11 peptide chain release factor-like protein YP_002291531.1 286949 D 409438 CDS YP_002291532.1 209917448 6998628 complement(287614..289071) 1 NC_011415.1 aminoacyl-histidine dipeptidase 289071 6998628 ECSE_0257 Escherichia coli SE11 aminoacyl-histidine dipeptidase YP_002291532.1 287614 R 409438 CDS YP_002291533.1 209917449 6998629 289332..289790 1 NC_011415.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 289790 6998629 ECSE_0258 Escherichia coli SE11 xanthine-guanine phosphoribosyltransferase YP_002291533.1 289332 D 409438 CDS YP_002291534.1 209917450 6998630 289882..291126 1 NC_011415.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation; fermentation/respiration switch protein 291126 frsA 6998630 frsA Escherichia coli SE11 fermentation/respiration switch protein YP_002291534.1 289882 D 409438 CDS YP_002291535.1 209917451 6998631 291184..291585 1 NC_011415.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 291585 6998631 ECSE_0260 Escherichia coli SE11 DNA-binding transcriptional regulator Crl YP_002291535.1 291184 D 409438 CDS YP_002291536.1 209917452 6998632 complement(291624..292679) 1 NC_011415.1 outer membrane phosphoporin protein E 292679 6998632 ECSE_0261 Escherichia coli SE11 outer membrane phosphoporin protein E YP_002291536.1 291624 R 409438 CDS YP_002291537.1 209917453 6998633 292967..294070 1 NC_011415.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 294070 6998633 ECSE_0262 Escherichia coli SE11 gamma-glutamyl kinase YP_002291537.1 292967 D 409438 CDS YP_002291538.1 209917454 6998634 294082..295335 1 NC_011415.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 295335 proA 6998634 proA Escherichia coli SE11 gamma-glutamyl phosphate reductase YP_002291538.1 294082 D 409438 CDS YP_002291539.1 209917455 7003076 295689..296879 1 NC_011415.1 putative phage integrase 296879 7003076 ECSE_0264 Escherichia coli SE11 putative phage integrase YP_002291539.1 295689 D 409438 CDS YP_002291540.1 209917456 6998636 297308..298582 1 NC_011415.1 hypothetical protein 298582 6998636 ECSE_0265 Escherichia coli SE11 hypothetical protein YP_002291540.1 297308 D 409438 CDS YP_002291541.1 209917457 6998637 299064..301025 1 NC_011415.1 hypothetical protein 301025 6998637 ECSE_0266 Escherichia coli SE11 hypothetical protein YP_002291541.1 299064 D 409438 CDS YP_002291542.1 209917458 6998638 complement(301806..302057) 1 NC_011415.1 hypothetical protein 302057 6998638 ECSE_0267 Escherichia coli SE11 hypothetical protein YP_002291542.1 301806 R 409438 CDS YP_002291543.1 209917459 6998639 complement(302185..302931) 1 NC_011415.1 hypothetical protein 302931 6998639 ECSE_0268 Escherichia coli SE11 hypothetical protein YP_002291543.1 302185 R 409438 CDS YP_002291544.1 209917460 6998640 complement(302983..303534) 1 NC_011415.1 hypothetical protein 303534 6998640 ECSE_0269 Escherichia coli SE11 hypothetical protein YP_002291544.1 302983 R 409438 CDS YP_002291545.1 209917461 6998641 complement(303546..303803) 1 NC_011415.1 hypothetical protein 303803 6998641 ECSE_0270 Escherichia coli SE11 hypothetical protein YP_002291545.1 303546 R 409438 CDS YP_002291546.1 209917462 6998642 complement(304130..305392) 1 NC_011415.1 putative PTS system IIC component 305392 6998642 ECSE_0271 Escherichia coli SE11 putative PTS system IIC component YP_002291546.1 304130 R 409438 CDS YP_002291547.1 209917463 6998643 complement(305481..306476) 1 NC_011415.1 putative phosphoglycerate dehydrogenase 306476 6998643 ECSE_0272 Escherichia coli SE11 putative phosphoglycerate dehydrogenase YP_002291547.1 305481 R 409438 CDS YP_002291548.1 209917464 6998644 complement(306493..307254) 1 NC_011415.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase 307254 6998644 ECSE_0273 Escherichia coli SE11 putative 3-oxoacyl-[acyl-carrier-protein] reductase YP_002291548.1 306493 R 409438 CDS YP_002291549.1 209917465 6998645 complement(307266..308804) 1 NC_011415.1 putative L-xylulose kinase 308804 6998645 ECSE_0274 Escherichia coli SE11 putative L-xylulose kinase YP_002291549.1 307266 R 409438 CDS YP_002291550.1 209917466 6998646 complement(308825..309376) 1 NC_011415.1 putative glycerol uptake operon antiterminator 309376 6998646 ECSE_0275 Escherichia coli SE11 putative glycerol uptake operon antiterminator YP_002291550.1 308825 R 409438 CDS YP_002291551.1 209917467 6998647 complement(309391..310182) 1 NC_011415.1 hypothetical protein 310182 6998647 ECSE_0276 Escherichia coli SE11 hypothetical protein YP_002291551.1 309391 R 409438 CDS YP_002291552.1 209917468 6998648 complement(310572..310964) 1 NC_011415.1 hypothetical protein 310964 6998648 ECSE_0277 Escherichia coli SE11 hypothetical protein YP_002291552.1 310572 R 409438 CDS YP_002291553.1 209917469 6998649 complement(310989..312245) 1 NC_011415.1 putative transport protein 312245 6998649 ECSE_0278 Escherichia coli SE11 putative transport protein YP_002291553.1 310989 R 409438 CDS YP_002291554.1 209917470 6998650 complement(312284..312859) 1 NC_011415.1 hypothetical protein 312859 6998650 ECSE_0279 Escherichia coli SE11 hypothetical protein YP_002291554.1 312284 R 409438 CDS YP_002291555.1 209917471 6998651 complement(312897..313715) 1 NC_011415.1 putative N-acetyltransferase 313715 6998651 ECSE_0280 Escherichia coli SE11 putative N-acetyltransferase YP_002291555.1 312897 R 409438 CDS YP_002291556.1 209917472 6998652 complement(313776..314210) 1 NC_011415.1 hypothetical protein 314210 6998652 ECSE_0281 Escherichia coli SE11 hypothetical protein YP_002291556.1 313776 R 409438 CDS YP_002291557.1 209917473 6998653 315173..315781 1 NC_011415.1 hypothetical protein 315781 6998653 ECSE_0282 Escherichia coli SE11 hypothetical protein YP_002291557.1 315173 D 409438 CDS YP_002291558.1 209917474 6998654 complement(315998..316264) 1 NC_011415.1 hypothetical protein 316264 6998654 ECSE_0283 Escherichia coli SE11 hypothetical protein YP_002291558.1 315998 R 409438 CDS YP_002291559.1 209917475 6998655 complement(316315..316893) 1 NC_011415.1 hypothetical protein 316893 6998655 ECSE_0284 Escherichia coli SE11 hypothetical protein YP_002291559.1 316315 R 409438 CDS YP_002291560.1 209917476 6998656 317309..318226 1 NC_011415.1 hypothetical protein 318226 6998656 ECSE_0285 Escherichia coli SE11 hypothetical protein YP_002291560.1 317309 D 409438 CDS YP_002291561.1 209917477 6998657 complement(318605..319333) 1 NC_011415.1 hypothetical protein 319333 6998657 ECSE_0286 Escherichia coli SE11 hypothetical protein YP_002291561.1 318605 R 409438 CDS YP_002291562.1 209917478 6998658 complement(319507..320124) 1 NC_011415.1 hypothetical protein 320124 6998658 ECSE_0287 Escherichia coli SE11 hypothetical protein YP_002291562.1 319507 R 409438 CDS YP_002291563.1 209917479 6998659 complement(320385..321068) 1 NC_011415.1 hypothetical protein 321068 6998659 ECSE_0288 Escherichia coli SE11 hypothetical protein YP_002291563.1 320385 R 409438 CDS YP_002291564.1 209917480 6998660 321721..322596 1 NC_011415.1 hypothetical protein 322596 6998660 ECSE_0289 Escherichia coli SE11 hypothetical protein YP_002291564.1 321721 D 409438 CDS YP_002291565.1 209917481 6998661 322797..323501 1 NC_011415.1 hypothetical protein 323501 6998661 ECSE_0290 Escherichia coli SE11 hypothetical protein YP_002291565.1 322797 D 409438 CDS YP_002291566.1 209917482 6998662 323498..324070 1 NC_011415.1 hypothetical protein 324070 6998662 ECSE_0291 Escherichia coli SE11 hypothetical protein YP_002291566.1 323498 D 409438 CDS YP_002291567.1 209917483 6998663 324107..324559 1 NC_011415.1 hypothetical protein 324559 6998663 ECSE_0292 Escherichia coli SE11 hypothetical protein YP_002291567.1 324107 D 409438 CDS YP_002291568.1 209917484 6998664 324556..325005 1 NC_011415.1 hypothetical protein 325005 6998664 ECSE_0293 Escherichia coli SE11 hypothetical protein YP_002291568.1 324556 D 409438 CDS YP_002291569.1 209917485 6998665 325077..325307 1 NC_011415.1 hypothetical protein 325307 6998665 ECSE_0294 Escherichia coli SE11 hypothetical protein YP_002291569.1 325077 D 409438 CDS YP_002291570.1 209917486 6998666 325406..326227 1 NC_011415.1 hypothetical protein 326227 6998666 ECSE_0295 Escherichia coli SE11 hypothetical protein YP_002291570.1 325406 D 409438 CDS YP_002291571.1 209917487 6998667 326258..326701 1 NC_011415.1 hypothetical protein 326701 6998667 ECSE_0296 Escherichia coli SE11 hypothetical protein YP_002291571.1 326258 D 409438 CDS YP_002291572.1 209917488 6998668 326714..327256 1 NC_011415.1 hypothetical protein 327256 6998668 ECSE_0297 Escherichia coli SE11 hypothetical protein YP_002291572.1 326714 D 409438 CDS YP_002291573.1 209917489 6998669 327267..327608 1 NC_011415.1 hypothetical protein 327608 6998669 ECSE_0298 Escherichia coli SE11 hypothetical protein YP_002291573.1 327267 D 409438 CDS YP_002291574.1 209917490 6998670 327629..327994 1 NC_011415.1 hypothetical protein 327994 6998670 ECSE_0299 Escherichia coli SE11 hypothetical protein YP_002291574.1 327629 D 409438 CDS YP_002291575.1 209917491 6998671 complement(328321..328731) 1 NC_011415.1 putative transcriptional regulator 328731 6998671 ECSE_0300 Escherichia coli SE11 putative transcriptional regulator YP_002291575.1 328321 R 409438 CDS YP_002291576.1 209917492 6998672 complement(328710..329666) 1 NC_011415.1 hypothetical protein 329666 6998672 ECSE_0301 Escherichia coli SE11 hypothetical protein YP_002291576.1 328710 R 409438 CDS YP_002291577.1 209917493 6998673 complement(329676..331874) 1 NC_011415.1 putative oxidoreductase 331874 6998673 ECSE_0302 Escherichia coli SE11 putative oxidoreductase YP_002291577.1 329676 R 409438 CDS YP_002291578.1 209917494 6998674 complement(331871..332827) 1 NC_011415.1 putative oxidoreductase 332827 6998674 ECSE_0303 Escherichia coli SE11 putative oxidoreductase YP_002291578.1 331871 R 409438 CDS YP_002291579.1 209917495 6998675 complement(332824..333513) 1 NC_011415.1 putative xanthine dehydrogenase iron-sulfur-binding subunit 333513 6998675 ECSE_0304 Escherichia coli SE11 putative xanthine dehydrogenase iron-sulfur-binding subunit YP_002291579.1 332824 R 409438 CDS YP_002291580.1 209917496 6998676 333931..334545 1 NC_011415.1 hypothetical protein 334545 6998676 ECSE_0305 Escherichia coli SE11 hypothetical protein YP_002291580.1 333931 D 409438 CDS YP_002291581.1 209917497 6998677 complement(334793..335122) 1 NC_011415.1 hypothetical protein 335122 6998677 ECSE_0306 Escherichia coli SE11 hypothetical protein YP_002291581.1 334793 R 409438 CDS YP_002291582.1 209917498 6998678 complement(335435..336190) 1 NC_011415.1 hypothetical protein 336190 6998678 ECSE_0307 Escherichia coli SE11 hypothetical protein YP_002291582.1 335435 R 409438 CDS YP_002291583.1 209917499 6998679 complement(336114..337757) 1 NC_011415.1 hypothetical protein 337757 6998679 ECSE_0308 Escherichia coli SE11 hypothetical protein YP_002291583.1 336114 R 409438 CDS YP_002291584.1 209917500 6998680 complement(337747..340272) 1 NC_011415.1 hypothetical protein 340272 6998680 ECSE_0309 Escherichia coli SE11 hypothetical protein YP_002291584.1 337747 R 409438 CDS YP_002291585.1 209917501 6998681 complement(340298..340966) 1 NC_011415.1 hypothetical protein 340966 6998681 ECSE_0310 Escherichia coli SE11 hypothetical protein YP_002291585.1 340298 R 409438 CDS YP_002291586.1 209917502 6998682 complement(341024..341611) 1 NC_011415.1 hypothetical protein 341611 6998682 ECSE_0311 Escherichia coli SE11 hypothetical protein YP_002291586.1 341024 R 409438 CDS YP_002291587.1 209917503 6998683 complement(341686..342276) 1 NC_011415.1 putative regulator 342276 6998683 ECSE_0312 Escherichia coli SE11 putative regulator YP_002291587.1 341686 R 409438 CDS YP_002291588.1 209917504 6998684 complement(343313..343453) 1 NC_011415.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 343453 rpmJ 6998684 rpmJ Escherichia coli SE11 50S ribosomal protein L36 YP_002291588.1 343313 R 409438 CDS YP_002291589.1 209917505 6998685 complement(343453..343716) 1 NC_011415.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 343716 rpmE2 6998685 rpmE2 Escherichia coli SE11 50S ribosomal protein L31 type B YP_002291589.1 343453 R 409438 CDS YP_002291590.1 209917506 6998686 complement(343840..344001) 1 NC_011415.1 hypothetical protein 344001 6998686 ECSE_0315 Escherichia coli SE11 hypothetical protein YP_002291590.1 343840 R 409438 CDS YP_002291591.1 209917507 6998687 345296..349549 1 NC_011415.1 putative invasin 349549 6998687 ECSE_0316 Escherichia coli SE11 putative invasin YP_002291591.1 345296 D 409438 CDS YP_002291592.1 209917508 6998688 complement(349670..350527) 1 NC_011415.1 putative transcription regulator 350527 6998688 ECSE_0317 Escherichia coli SE11 putative transcription regulator YP_002291592.1 349670 R 409438 CDS YP_002291593.1 209917509 6998689 350776..351645 1 NC_011415.1 putative dehydrogenase 351645 6998689 ECSE_0318 Escherichia coli SE11 putative dehydrogenase YP_002291593.1 350776 D 409438 CDS YP_002291594.1 209917510 6998690 complement(351810..352409) 1 NC_011415.1 hypothetical protein 352409 6998690 ECSE_0319 Escherichia coli SE11 hypothetical protein YP_002291594.1 351810 R 409438 CDS YP_002291595.1 209917511 6998691 complement(352412..352663) 1 NC_011415.1 hypothetical protein 352663 6998691 ECSE_0320 Escherichia coli SE11 hypothetical protein YP_002291595.1 352412 R 409438 CDS YP_002291596.1 209917512 6998692 complement(352757..354082) 1 NC_011415.1 Involved in disulfide oxidoreductase activity and electron transport; pyridine nucleotide-disulfide oxidoreductase 354082 6998692 ECSE_0321 Escherichia coli SE11 pyridine nucleotide-disulfide oxidoreductase YP_002291596.1 352757 R 409438 CDS YP_002291597.1 209917513 6998693 354308..355162 1 NC_011415.1 putative transcriptional regulator 355162 6998693 ECSE_0322 Escherichia coli SE11 putative transcriptional regulator YP_002291597.1 354308 D 409438 CDS YP_002291598.1 209917514 6998694 355690..356409 1 NC_011415.1 hypothetical protein 356409 6998694 ECSE_0323 Escherichia coli SE11 hypothetical protein YP_002291598.1 355690 D 409438 CDS YP_002291599.1 209917515 6998695 356420..357847 1 NC_011415.1 hypothetical protein 357847 6998695 ECSE_0324 Escherichia coli SE11 hypothetical protein YP_002291599.1 356420 D 409438 CDS YP_002291600.1 209917516 6998696 357840..358535 1 NC_011415.1 putative transport protein 358535 6998696 ECSE_0325 Escherichia coli SE11 putative transport protein YP_002291600.1 357840 D 409438 CDS YP_002291601.1 209917517 6998697 complement(358778..359446) 1 NC_011415.1 hypothetical protein 359446 6998697 ECSE_0326 Escherichia coli SE11 hypothetical protein YP_002291601.1 358778 R 409438 CDS YP_002291602.1 209917518 6998698 complement(359630..361927) 1 NC_011415.1 putative autotransporter 361927 6998698 ECSE_0327 Escherichia coli SE11 putative autotransporter YP_002291602.1 359630 R 409438 CDS YP_002291603.1 209917519 6998699 complement(361969..362730) 1 NC_011415.1 hypothetical protein 362730 6998699 ECSE_0328 Escherichia coli SE11 hypothetical protein YP_002291603.1 361969 R 409438 CDS YP_002291604.1 209917520 6998700 complement(362884..363588) 1 NC_011415.1 hypothetical protein 363588 6998700 ECSE_0329 Escherichia coli SE11 hypothetical protein YP_002291604.1 362884 R 409438 CDS YP_002291605.1 209917521 6998701 complement(363560..363715) 1 NC_011415.1 hypothetical protein 363715 6998701 ECSE_0330 Escherichia coli SE11 hypothetical protein YP_002291605.1 363560 R 409438 CDS YP_002291606.1 209917522 6998702 complement(364008..364571) 1 NC_011415.1 putative phage integrase 364571 6998702 ECSE_0331 Escherichia coli SE11 putative phage integrase YP_002291606.1 364008 R 409438 CDS YP_002291607.1 209917523 6998703 complement(365646..367316) 1 NC_011415.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 367316 6998703 ECSE_0332 Escherichia coli SE11 choline dehydrogenase YP_002291607.1 365646 R 409438 CDS YP_002291608.1 209917524 6998704 complement(367330..368802) 1 NC_011415.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 368802 6998704 ECSE_0333 Escherichia coli SE11 betaine aldehyde dehydrogenase YP_002291608.1 367330 R 409438 CDS YP_002291609.1 209917525 6998705 complement(368816..369403) 1 NC_011415.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 369403 6998705 ECSE_0334 Escherichia coli SE11 transcriptional regulator BetI YP_002291609.1 368816 R 409438 CDS YP_002291610.1 209917526 6998706 369532..371565 1 NC_011415.1 proton-motive-force-driven choline transporter; choline transport protein BetT 371565 6998706 ECSE_0335 Escherichia coli SE11 choline transport protein BetT YP_002291610.1 369532 D 409438 CDS YP_002291611.1 209917527 6998707 372440..373528 1 NC_011415.1 hypothetical protein 373528 6998707 ECSE_0336 Escherichia coli SE11 hypothetical protein YP_002291611.1 372440 D 409438 CDS YP_002291612.1 209917528 6998708 complement(373570..374502) 1 NC_011415.1 putative transcriptional regulator 374502 6998708 ECSE_0337 Escherichia coli SE11 putative transcriptional regulator YP_002291612.1 373570 R 409438 CDS YP_002291613.1 209917529 6998709 complement(374594..375091) 1 NC_011415.1 hypothetical protein 375091 6998709 ECSE_0338 Escherichia coli SE11 hypothetical protein YP_002291613.1 374594 R 409438 CDS YP_002291614.1 209917530 6998710 375349..375954 1 NC_011415.1 hypothetical protein 375954 6998710 ECSE_0339 Escherichia coli SE11 hypothetical protein YP_002291614.1 375349 D 409438 CDS YP_002291615.1 209917531 6998711 375994..376857 1 NC_011415.1 hypothetical protein 376857 6998711 ECSE_0340 Escherichia coli SE11 hypothetical protein YP_002291615.1 375994 D 409438 CDS YP_002291616.1 209917532 6998712 376847..378394 1 NC_011415.1 hypothetical protein 378394 6998712 ECSE_0341 Escherichia coli SE11 hypothetical protein YP_002291616.1 376847 D 409438 CDS YP_002291617.1 209917533 6998713 378394..379812 1 NC_011415.1 hypothetical protein 379812 6998713 ECSE_0342 Escherichia coli SE11 hypothetical protein YP_002291617.1 378394 D 409438 CDS YP_002291618.1 209917534 6998714 379955..380905 1 NC_011415.1 putative carbamate kinase 380905 6998714 ECSE_0343 Escherichia coli SE11 putative carbamate kinase YP_002291618.1 379955 D 409438 CDS YP_002291619.1 209917535 6998715 380915..382297 1 NC_011415.1 metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; putative deaminase 382297 6998715 ECSE_0344 Escherichia coli SE11 putative deaminase YP_002291619.1 380915 D 409438 CDS YP_002291620.1 209917536 6998716 382596..383006 1 NC_011415.1 hypothetical protein 383006 6998716 ECSE_0345 Escherichia coli SE11 hypothetical protein YP_002291620.1 382596 D 409438 CDS YP_002291621.1 209917537 6998717 383257..384243 1 NC_011415.1 putative sugar ABC transporter substrate binding component 384243 6998717 ECSE_0346 Escherichia coli SE11 putative sugar ABC transporter substrate binding component YP_002291621.1 383257 D 409438 CDS YP_002291622.1 209917538 6998718 384292..385776 1 NC_011415.1 putative sugar ABC transporter ATP-binding protein 385776 6998718 ECSE_0347 Escherichia coli SE11 putative sugar ABC transporter ATP-binding protein YP_002291622.1 384292 D 409438 CDS YP_002291623.1 209917539 6998719 385769..386740 1 NC_011415.1 putative sugar ABC transporter permease 386740 6998719 ECSE_0348 Escherichia coli SE11 putative sugar ABC transporter permease YP_002291623.1 385769 D 409438 CDS YP_002291624.1 209917540 6998720 386737..387693 1 NC_011415.1 putative sugar ABC transporter permease 387693 6998720 ECSE_0349 Escherichia coli SE11 putative sugar ABC transporter permease YP_002291624.1 386737 D 409438 CDS YP_002291625.1 209917541 6998721 387780..388829 1 NC_011415.1 putative oxidoreductase 388829 6998721 ECSE_0350 Escherichia coli SE11 putative oxidoreductase YP_002291625.1 387780 D 409438 CDS YP_002291626.1 209917542 6998722 389072..389887 1 NC_011415.1 hypothetical protein 389887 6998722 ECSE_0351 Escherichia coli SE11 hypothetical protein YP_002291626.1 389072 D 409438 CDS YP_002291627.1 209917543 6998723 390270..390545 1 NC_011415.1 hypothetical protein 390545 6998723 ECSE_0352 Escherichia coli SE11 hypothetical protein YP_002291627.1 390270 D 409438 CDS YP_002291628.1 209917544 6998724 complement(390562..391194) 1 NC_011415.1 putative dehydrogenase cytochrome subunit 391194 6998724 ECSE_0353 Escherichia coli SE11 putative dehydrogenase cytochrome subunit YP_002291628.1 390562 R 409438 CDS YP_002291629.1 209917545 6998725 391380..391655 1 NC_011415.1 hypothetical protein 391655 6998725 ECSE_0354 Escherichia coli SE11 hypothetical protein YP_002291629.1 391380 D 409438 CDS YP_002291630.1 209917546 6998726 complement(391756..393342) 1 NC_011415.1 propionate catabolism operon regulator 393342 6998726 ECSE_0355 Escherichia coli SE11 propionate catabolism operon regulator YP_002291630.1 391756 R 409438 CDS YP_002291631.1 209917547 6998727 393581..394471 1 NC_011415.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 394471 prpB 6998727 prpB Escherichia coli SE11 2-methylisocitrate lyase YP_002291631.1 393581 D 409438 CDS YP_002291632.1 209917548 6998728 394516..395685 1 NC_011415.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 395685 6998728 ECSE_0357 Escherichia coli SE11 methylcitrate synthase YP_002291632.1 394516 D 409438 CDS YP_002291633.1 209917549 6998729 395719..397170 1 NC_011415.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 397170 prpD 6998729 prpD Escherichia coli SE11 2-methylcitrate dehydratase YP_002291633.1 395719 D 409438 CDS YP_002291634.1 209917550 6998730 397210..399096 1 NC_011415.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 399096 prpE 6998730 prpE Escherichia coli SE11 propionyl-CoA synthetase YP_002291634.1 397210 D 409438 CDS YP_002291635.1 209917551 6998731 399464..400444 1 NC_011415.1 transposase 400444 6998731 ECSE_0360 Escherichia coli SE11 transposase YP_002291635.1 399464 D 409438 CDS YP_002291636.1 209917552 6998732 400713..401972 1 NC_011415.1 cytosine permease 401972 codB 6998732 codB Escherichia coli SE11 cytosine permease YP_002291636.1 400713 D 409438 CDS YP_002291637.1 209917553 6998733 401962..403245 1 NC_011415.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 403245 6998733 ECSE_0362 Escherichia coli SE11 cytosine deaminase YP_002291637.1 401962 D 409438 CDS YP_002291638.1 209917554 6998734 complement(403285..404184) 1 NC_011415.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source; DNA-binding transcriptional regulator CynR 404184 6998734 ECSE_0363 Escherichia coli SE11 DNA-binding transcriptional regulator CynR YP_002291638.1 403285 R 409438 CDS YP_002291639.1 209917555 6998735 404294..404953 1 NC_011415.1 carbonic anhydrase 404953 6998735 ECSE_0364 Escherichia coli SE11 carbonic anhydrase YP_002291639.1 404294 D 409438 CDS YP_002291640.1 209917556 6998736 404984..405454 1 NC_011415.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 405454 6998736 ECSE_0365 Escherichia coli SE11 cyanate hydratase YP_002291640.1 404984 D 409438 CDS YP_002291641.1 209917557 6998737 405487..405726 1 NC_011415.1 putative cyanate transport protein 405726 6998737 ECSE_0366 Escherichia coli SE11 putative cyanate transport protein YP_002291641.1 405487 D 409438 CDS YP_002291642.1 209917558 6998738 405723..406640 1 NC_011415.1 putative cyanate transport protein 406640 6998738 ECSE_0367 Escherichia coli SE11 putative cyanate transport protein YP_002291642.1 405723 D 409438 CDS YP_002291643.1 209917559 6998739 complement(406719..407972) 1 NC_011415.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease 407972 lacY 6998739 lacY Escherichia coli SE11 galactoside permease YP_002291643.1 406719 R 409438 CDS YP_002291644.1 209917560 6998740 complement(408024..411098) 1 NC_011415.1 forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon; beta-D-galactosidase 411098 lacZ 6998740 lacZ Escherichia coli SE11 beta-D-galactosidase YP_002291644.1 408024 R 409438 CDS YP_002291645.1 209917561 6998741 complement(411221..412303) 1 NC_011415.1 transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer; lac repressor 412303 lacI 6998741 lacI Escherichia coli SE11 lac repressor YP_002291645.1 411221 R 409438 CDS YP_002291646.1 209917562 6998742 complement(412380..413327) 1 NC_011415.1 activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional activator MhpR 413327 6998742 ECSE_0371 Escherichia coli SE11 DNA-binding transcriptional activator MhpR YP_002291646.1 412380 R 409438 CDS YP_002291647.1 209917563 6998743 413404..415068 1 NC_011415.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase 415068 mhpA 6998743 mhpA Escherichia coli SE11 3-(3-hydroxyphenyl)propionate hydroxylase YP_002291647.1 413404 D 409438 CDS YP_002291648.1 209917564 6998744 415070..416014 1 NC_011415.1 catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family; 3-(2,3-dihydroxyphenyl)propionate dioxygenase 416014 mhpB 6998744 mhpB Escherichia coli SE11 3-(2,3-dihydroxyphenyl)propionate dioxygenase YP_002291648.1 415070 D 409438 CDS YP_002291649.1 209917565 6998745 416017..416898 1 NC_011415.1 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 416898 6998745 ECSE_0374 Escherichia coli SE11 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase YP_002291649.1 416017 D 409438 CDS YP_002291650.1 209917566 6998746 416902..417717 1 NC_011415.1 catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid; 2-keto-4-pentenoate hydratase 417717 mhpD 6998746 mhpD Escherichia coli SE11 2-keto-4-pentenoate hydratase YP_002291650.1 416902 D 409438 CDS YP_002291651.1 209917567 6998747 417714..418664 1 NC_011415.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 418664 6998747 ECSE_0376 Escherichia coli SE11 acetaldehyde dehydrogenase YP_002291651.1 417714 D 409438 CDS YP_002291652.1 209917568 6998748 418661..419674 1 NC_011415.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 419674 6998748 ECSE_0377 Escherichia coli SE11 4-hydroxy-2-ketovalerate aldolase YP_002291652.1 418661 D 409438 CDS YP_002291653.1 209917569 6998749 419805..421061 1 NC_011415.1 putative 3-hydroxyphenylpropionic transporter MhpT 421061 6998749 ECSE_0378 Escherichia coli SE11 putative 3-hydroxyphenylpropionic transporter MhpT YP_002291653.1 419805 D 409438 CDS YP_002291654.1 209917570 6998750 421163..421702 1 NC_011415.1 hypothetical protein 421702 6998750 ECSE_0379 Escherichia coli SE11 hypothetical protein YP_002291654.1 421163 D 409438 CDS YP_002291655.1 209917571 6998751 complement(421927..422760) 1 NC_011415.1 putative esterase 422760 6998751 ECSE_0380 Escherichia coli SE11 putative esterase YP_002291655.1 421927 R 409438 CDS YP_002291656.1 209917572 6998752 complement(422853..423962) 1 NC_011415.1 alcohol dehydrogenase 423962 6998752 ECSE_0381 Escherichia coli SE11 alcohol dehydrogenase YP_002291656.1 422853 R 409438 CDS YP_002291657.1 209917573 6998753 complement(423997..424272) 1 NC_011415.1 formaldehyde-induced negative regulator of the frmRAB operon; regulator protein FrmR 424272 6998753 ECSE_0382 Escherichia coli SE11 regulator protein FrmR YP_002291657.1 423997 R 409438 CDS YP_002291658.1 209917574 6998754 complement(424457..425230) 1 NC_011415.1 hypothetical protein 425230 6998754 ECSE_0383 Escherichia coli SE11 hypothetical protein YP_002291658.1 424457 R 409438 CDS YP_002291659.1 209917575 6998755 complement(425232..425672) 1 NC_011415.1 putative transferase 425672 6998755 ECSE_0384 Escherichia coli SE11 putative transferase YP_002291659.1 425232 R 409438 CDS YP_002291660.1 209917576 6998756 complement(425791..426987) 1 NC_011415.1 hypothetical protein 426987 6998756 ECSE_0385 Escherichia coli SE11 hypothetical protein YP_002291660.1 425791 R 409438 CDS YP_002291661.1 209917577 6998757 complement(426997..427668) 1 NC_011415.1 hypothetical protein 427668 6998757 ECSE_0386 Escherichia coli SE11 hypothetical protein YP_002291661.1 426997 R 409438 CDS YP_002291662.1 209917578 6998758 428284..429246 1 NC_011415.1 with TauB and TauC is responsible for taurine uptake.; taurine transporter substrate binding subunit 429246 tauA 6998758 tauA Escherichia coli SE11 taurine transporter substrate binding subunit YP_002291662.1 428284 D 409438 CDS YP_002291663.1 209917579 6998759 429259..430026 1 NC_011415.1 Part of the ABC transporter complex tauABC involved in taurine import; taurine transporter ATP-binding subunit 430026 tauB 6998759 tauB Escherichia coli SE11 taurine transporter ATP-binding subunit YP_002291663.1 429259 D 409438 CDS YP_002291664.1 209917580 6998760 430023..430850 1 NC_011415.1 taurine transporter subunit 430850 6998760 ECSE_0389 Escherichia coli SE11 taurine transporter subunit YP_002291664.1 430023 D 409438 CDS YP_002291665.1 209917581 6998761 430847..431698 1 NC_011415.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers; taurine dioxygenase 431698 tauD 6998761 tauD Escherichia coli SE11 taurine dioxygenase YP_002291665.1 430847 D 409438 CDS YP_002291666.1 209917582 6998762 complement(431804..432778) 1 NC_011415.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 432778 6998762 ECSE_0391 Escherichia coli SE11 delta-aminolevulinic acid dehydratase YP_002291666.1 431804 R 409438 CDS YP_002291667.1 209917583 6998763 complement(432948..433217) 1 NC_011415.1 hypothetical protein 433217 6998763 ECSE_0392 Escherichia coli SE11 hypothetical protein YP_002291667.1 432948 R 409438 CDS YP_002291668.1 209917584 6998764 433302..436208 1 NC_011415.1 putative autotransporter 436208 6998764 ECSE_0393 Escherichia coli SE11 putative autotransporter YP_002291668.1 433302 D 409438 CDS YP_002291669.1 209917585 6998765 436251..436919 1 NC_011415.1 putative DNA-binding transcriptional regulator 436919 6998765 ECSE_0394 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002291669.1 436251 D 409438 CDS YP_002291670.1 209917586 6998766 complement(436920..438077) 1 NC_011415.1 this protein has no known enzymatic function; beta-lactam binding protein AmpH 438077 6998766 ECSE_0395 Escherichia coli SE11 beta-lactam binding protein AmpH YP_002291670.1 436920 R 409438 CDS YP_002291671.1 209917587 6998767 438215..438409 1 NC_011415.1 hypothetical protein 438409 6998767 ECSE_0396 Escherichia coli SE11 hypothetical protein YP_002291671.1 438215 D 409438 CDS YP_002291672.1 209917588 6998768 438429..439649 1 NC_011415.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transport protein 439649 6998768 ECSE_0397 Escherichia coli SE11 transport protein YP_002291672.1 438429 D 409438 CDS YP_002291673.1 209917589 6998769 439662..440756 1 NC_011415.1 hypothetical protein 440756 6998769 ECSE_0398 Escherichia coli SE11 hypothetical protein YP_002291673.1 439662 D 409438 CDS YP_002291674.1 209917590 6998770 complement(440815..441123) 1 NC_011415.1 hypothetical protein 441123 6998770 ECSE_0399 Escherichia coli SE11 hypothetical protein YP_002291674.1 440815 R 409438 CDS YP_002291675.1 209917591 6998771 441251..441595 1 NC_011415.1 hypothetical protein 441595 6998771 ECSE_0400 Escherichia coli SE11 hypothetical protein YP_002291675.1 441251 D 409438 CDS YP_002291676.1 209917592 6998772 complement(441619..442713) 1 NC_011415.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 442713 ddl 6998772 ddl Escherichia coli SE11 D-alanyl-alanine synthetase A YP_002291676.1 441619 R 409438 CDS YP_002291677.1 209917593 6998773 442791..442994 1 NC_011415.1 hypothetical protein 442994 6998773 ECSE_0402 Escherichia coli SE11 hypothetical protein YP_002291677.1 442791 D 409438 CDS YP_002291678.1 209917594 6998774 443176..443436 1 NC_011415.1 hypothetical protein 443436 6998774 ECSE_0403 Escherichia coli SE11 hypothetical protein YP_002291678.1 443176 D 409438 CDS YP_002291679.1 209917595 6998775 443468..444952 1 NC_011415.1 alkaline phosphatase 444952 6998775 ECSE_0404 Escherichia coli SE11 alkaline phosphatase YP_002291679.1 443468 D 409438 CDS YP_002291680.1 209917596 6998776 445071..445391 1 NC_011415.1 hypothetical protein 445391 6998776 ECSE_0405 Escherichia coli SE11 hypothetical protein YP_002291680.1 445071 D 409438 CDS YP_002291681.1 209917597 6998777 445493..446608 1 NC_011415.1 catalyzes the conversion of 2 GTP into c-di-GMP; adrA overexpression induces cellulose biosynthesis, cell adherence to abiotic surfaces and swimming and swarming motility; AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis; diguanylate cyclase AdrA 446608 adrA 6998777 adrA Escherichia coli SE11 diguanylate cyclase AdrA YP_002291681.1 445493 D 409438 CDS YP_002291682.1 209917598 6998778 complement(446625..447434) 1 NC_011415.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 447434 6998778 ECSE_0407 Escherichia coli SE11 pyrroline-5-carboxylate reductase YP_002291682.1 446625 R 409438 CDS YP_002291683.1 209917599 6998779 447554..448012 1 NC_011415.1 hypothetical protein 448012 6998779 ECSE_0408 Escherichia coli SE11 hypothetical protein YP_002291683.1 447554 D 409438 CDS YP_002291684.1 209917600 6998780 448195..448719 1 NC_011415.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase II 448719 aroL 6998780 aroL Escherichia coli SE11 shikimate kinase II YP_002291684.1 448195 D 409438 CDS YP_002291685.1 209917601 6998781 448769..448960 1 NC_011415.1 hypothetical protein 448960 6998781 ECSE_0410 Escherichia coli SE11 hypothetical protein YP_002291685.1 448769 D 409438 CDS YP_002291686.1 209917602 6998782 449218..449895 1 NC_011415.1 hypothetical protein 449895 6998782 ECSE_0411 Escherichia coli SE11 hypothetical protein YP_002291686.1 449218 D 409438 CDS YP_002291687.1 209917603 6998783 449967..450251 1 NC_011415.1 hypothetical protein 450251 6998783 ECSE_0412 Escherichia coli SE11 hypothetical protein YP_002291687.1 449967 D 409438 CDS YP_002291688.1 209917604 6998784 450459..450740 1 NC_011415.1 hypothetical protein 450740 6998784 ECSE_0413 Escherichia coli SE11 hypothetical protein YP_002291688.1 450459 D 409438 CDS YP_002291689.1 209917605 6998785 complement(450898..451809) 1 NC_011415.1 Required for efficient pilin antigenic variation; recombination associated protein 451809 rdgC 6998785 rdgC Escherichia coli SE11 recombination associated protein YP_002291689.1 450898 R 409438 CDS YP_002291690.1 209917606 6998786 451934..452842 1 NC_011415.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 452842 6998786 ECSE_0415 Escherichia coli SE11 fructokinase YP_002291690.1 451934 D 409438 CDS YP_002291691.1 209917607 6998787 complement(452985..454169) 1 NC_011415.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers; MFS transport protein AraJ 454169 6998787 ECSE_0416 Escherichia coli SE11 MFS transport protein AraJ YP_002291691.1 452985 R 409438 CDS YP_002291692.1 209917608 6998788 complement(454295..457438) 1 NC_011415.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity; exonuclease subunit SbcC 457438 6998788 ECSE_0417 Escherichia coli SE11 exonuclease subunit SbcC YP_002291692.1 454295 R 409438 CDS YP_002291693.1 209917609 6998789 complement(457435..458637) 1 NC_011415.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 458637 6998789 ECSE_0418 Escherichia coli SE11 exonuclease subunit SbcD YP_002291693.1 457435 R 409438 CDS YP_002291694.1 209917610 6998790 458827..459516 1 NC_011415.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; transcriptional regulator PhoB 459516 6998790 ECSE_0419 Escherichia coli SE11 transcriptional regulator PhoB YP_002291694.1 458827 D 409438 CDS YP_002291695.1 209917611 6998791 459574..460869 1 NC_011415.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; phosphate regulon sensor protein 460869 phoR 6998791 phoR Escherichia coli SE11 phosphate regulon sensor protein YP_002291695.1 459574 D 409438 CDS YP_002291696.1 209917612 6998792 complement(461082..461231) 1 NC_011415.1 hypothetical protein 461231 6998792 ECSE_0421 Escherichia coli SE11 hypothetical protein YP_002291696.1 461082 R 409438 CDS YP_002291697.1 209917613 6998793 461276..462595 1 NC_011415.1 branched-chain amino acid transport protein 462595 6998793 ECSE_0422 Escherichia coli SE11 branched-chain amino acid transport protein YP_002291697.1 461276 D 409438 CDS YP_002291698.1 209917614 6998794 462671..464044 1 NC_011415.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; putative proline-specific permease 464044 proY 6998794 proY Escherichia coli SE11 putative proline-specific permease YP_002291698.1 462671 D 409438 CDS YP_002291699.1 209917615 6998795 464200..466017 1 NC_011415.1 maltodextrin glucosidase 466017 6998795 ECSE_0424 Escherichia coli SE11 maltodextrin glucosidase YP_002291699.1 464200 D 409438 CDS YP_002291700.1 209917616 6998796 complement(466022..466603) 1 NC_011415.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP; acyl carrier protein phosphodiesterase 466603 6998796 ECSE_0425 Escherichia coli SE11 acyl carrier protein phosphodiesterase YP_002291700.1 466022 R 409438 CDS YP_002291701.1 209917617 6998797 466696..467766 1 NC_011415.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 467766 queA 6998797 queA Escherichia coli SE11 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_002291701.1 466696 D 409438 CDS YP_002291702.1 209917618 6998798 467822..468949 1 NC_011415.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 468949 tgt 6998798 tgt Escherichia coli SE11 queuine tRNA-ribosyltransferase YP_002291702.1 467822 D 409438 CDS YP_002291703.1 209917619 6998799 468972..469304 1 NC_011415.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 469304 yajC 6998799 yajC Escherichia coli SE11 preprotein translocase subunit YajC YP_002291703.1 468972 D 409438 CDS YP_002291704.1 209917620 6998800 469332..471179 1 NC_011415.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 471179 secD 6998800 secD Escherichia coli SE11 preprotein translocase subunit SecD YP_002291704.1 469332 D 409438 CDS YP_002291705.1 209917621 6998801 471190..472161 1 NC_011415.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 472161 secF 6998801 secF Escherichia coli SE11 preprotein translocase subunit SecF YP_002291705.1 471190 D 409438 CDS YP_002291706.1 209917622 6998802 472290..472637 1 NC_011415.1 hypothetical protein 472637 6998802 ECSE_0431 Escherichia coli SE11 hypothetical protein YP_002291706.1 472290 D 409438 CDS YP_002291707.1 209917623 6998803 472651..472773 1 NC_011415.1 hypothetical protein 472773 6998803 ECSE_0432 Escherichia coli SE11 hypothetical protein YP_002291707.1 472651 D 409438 CDS YP_002291708.1 209917624 6998804 complement(472814..473698) 1 NC_011415.1 nucleoside channel protein 473698 6998804 ECSE_0433 Escherichia coli SE11 nucleoside channel protein YP_002291708.1 472814 R 409438 CDS YP_002291709.1 209917625 6998805 complement(473997..474536) 1 NC_011415.1 hypothetical protein 474536 6998805 ECSE_0434 Escherichia coli SE11 hypothetical protein YP_002291709.1 473997 R 409438 CDS YP_002291710.1 209917626 6998806 474687..475136 1 NC_011415.1 transcriptional regulator NrdR 475136 nrdR 6998806 nrdR Escherichia coli SE11 transcriptional regulator NrdR YP_002291710.1 474687 D 409438 CDS YP_002291711.1 209917627 6998807 475140..476243 1 NC_011415.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 476243 ribD 6998807 ribD Escherichia coli SE11 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_002291711.1 475140 D 409438 CDS YP_002291712.1 209917628 6998808 476332..476802 1 NC_011415.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 476802 ribH 6998808 ribH Escherichia coli SE11 6,7-dimethyl-8-ribityllumazine synthase YP_002291712.1 476332 D 409438 CDS YP_002291713.1 209917629 6998809 476822..477241 1 NC_011415.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 477241 nusB 6998809 nusB Escherichia coli SE11 transcription antitermination protein NusB YP_002291713.1 476822 D 409438 CDS YP_002291714.1 209917630 6998810 477319..478296 1 NC_011415.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 478296 6998810 ECSE_0439 Escherichia coli SE11 thiamine monophosphate kinase YP_002291714.1 477319 D 409438 CDS YP_002291715.1 209917631 6998811 478274..478792 1 NC_011415.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate; phosphatidylglycerophosphatase A 478792 6998811 ECSE_0440 Escherichia coli SE11 phosphatidylglycerophosphatase A YP_002291715.1 478274 D 409438 CDS YP_002291716.1 209917632 6998812 complement(478846..479820) 1 NC_011415.1 putative oxidoreductase 479820 6998812 ECSE_0441 Escherichia coli SE11 putative oxidoreductase YP_002291716.1 478846 R 409438 CDS YP_002291717.1 209917633 6998813 complement(479875..481737) 1 NC_011415.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 481737 6998813 ECSE_0442 Escherichia coli SE11 1-deoxy-D-xylulose-5-phosphate synthase YP_002291717.1 479875 R 409438 CDS YP_002291718.1 209917634 6998814 complement(481762..482661) 1 NC_011415.1 geranyltranstransferase 482661 6998814 ECSE_0443 Escherichia coli SE11 geranyltranstransferase YP_002291718.1 481762 R 409438 CDS YP_002291719.1 209917635 6998815 complement(482661..482903) 1 NC_011415.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 482903 6998815 ECSE_0444 Escherichia coli SE11 exodeoxyribonuclease VII small subunit YP_002291719.1 482661 R 409438 CDS YP_002291720.1 209917636 6998816 483109..484557 1 NC_011415.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 484557 6998816 ECSE_0445 Escherichia coli SE11 thiamine biosynthesis protein ThiI YP_002291720.1 483109 D 409438 CDS YP_002291721.1 209917637 6998817 complement(484611..485201) 1 NC_011415.1 DJ-1 family protein 485201 6998817 ECSE_0446 Escherichia coli SE11 DJ-1 family protein YP_002291721.1 484611 R 409438 CDS YP_002291722.1 209917638 6998818 complement(485164..486075) 1 NC_011415.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 486075 6998818 ECSE_0447 Escherichia coli SE11 2-dehydropantoate 2-reductase YP_002291722.1 485164 R 409438 CDS YP_002291723.1 209917639 6998819 486243..486734 1 NC_011415.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 486734 6998819 ECSE_0448 Escherichia coli SE11 putative nucleotide-binding protein YP_002291723.1 486243 D 409438 CDS YP_002291724.1 209917640 6998820 complement(486862..488226) 1 NC_011415.1 putative transport protein 488226 6998820 ECSE_0449 Escherichia coli SE11 putative transport protein YP_002291724.1 486862 R 409438 CDS YP_002291725.1 209917641 6998821 488574..489569 1 NC_011415.1 hypothetical protein 489569 6998821 ECSE_0450 Escherichia coli SE11 hypothetical protein YP_002291725.1 488574 D 409438 CDS YP_002291726.1 209917642 6998822 complement(489625..490167) 1 NC_011415.1 hypothetical protein 490167 6998822 ECSE_0451 Escherichia coli SE11 hypothetical protein YP_002291726.1 489625 R 409438 CDS YP_002291727.1 209917643 6998823 complement(490151..490462) 1 NC_011415.1 hypothetical protein 490462 6998823 ECSE_0452 Escherichia coli SE11 hypothetical protein YP_002291727.1 490151 R 409438 CDS YP_002291728.1 209917644 6998824 complement(490647..491534) 1 NC_011415.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 491534 6998824 ECSE_0453 Escherichia coli SE11 protoheme IX farnesyltransferase YP_002291728.1 490647 R 409438 CDS YP_002291729.1 209917645 6998825 complement(491549..491878) 1 NC_011415.1 cytochrome o ubiquinol oxidase subunit IV 491878 6998825 ECSE_0454 Escherichia coli SE11 cytochrome o ubiquinol oxidase subunit IV YP_002291729.1 491549 R 409438 CDS YP_002291730.1 209917646 6998826 complement(491878..492492) 1 NC_011415.1 cytochrome o ubiquinol oxidase subunit III 492492 6998826 ECSE_0455 Escherichia coli SE11 cytochrome o ubiquinol oxidase subunit III YP_002291730.1 491878 R 409438 CDS YP_002291731.1 209917647 6998827 complement(492482..494473) 1 NC_011415.1 cytochrome O ubiquinol oxidase subunit I 494473 6998827 ECSE_0456 Escherichia coli SE11 cytochrome O ubiquinol oxidase subunit I YP_002291731.1 492482 R 409438 CDS YP_002291732.1 209917648 6998828 complement(494495..495442) 1 NC_011415.1 cytochrome o ubiquinol oxidase subunit II 495442 6998828 ECSE_0457 Escherichia coli SE11 cytochrome o ubiquinol oxidase subunit II YP_002291732.1 494495 R 409438 CDS YP_002291733.1 209917649 6998829 complement(495902..497377) 1 NC_011415.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein; muropeptide transporter 497377 ampG 6998829 ampG Escherichia coli SE11 muropeptide transporter YP_002291733.1 495902 R 409438 CDS YP_002291734.1 209917650 6998830 complement(497421..497999) 1 NC_011415.1 hypothetical protein 497999 6998830 ECSE_0459 Escherichia coli SE11 hypothetical protein YP_002291734.1 497421 R 409438 CDS YP_002291735.1 209917651 6998831 498307..498621 1 NC_011415.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress; transcriptional regulator BolA 498621 6998831 ECSE_0460 Escherichia coli SE11 transcriptional regulator BolA YP_002291735.1 498307 D 409438 CDS YP_002291736.1 209917652 6998832 498630..498818 1 NC_011415.1 hypothetical protein 498818 6998832 ECSE_0461 Escherichia coli SE11 hypothetical protein YP_002291736.1 498630 D 409438 CDS YP_002291737.1 209917653 6998833 498965..500263 1 NC_011415.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 500263 tig 6998833 tig Escherichia coli SE11 trigger factor YP_002291737.1 498965 D 409438 CDS YP_002291738.1 209917654 6998834 500509..501132 1 NC_011415.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 501132 clpP 6998834 clpP Escherichia coli SE11 ATP-dependent Clp protease proteolytic subunit YP_002291738.1 500509 D 409438 CDS YP_002291739.1 209917655 6998835 501258..502532 1 NC_011415.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 502532 clpX 6998835 clpX Escherichia coli SE11 ATP-dependent protease ATP-binding subunit ClpX YP_002291739.1 501258 D 409438 CDS YP_002291740.1 209917656 6998836 502720..505074 1 NC_011415.1 DNA-binding ATP-dependent protease La 505074 6998836 ECSE_0465 Escherichia coli SE11 DNA-binding ATP-dependent protease La YP_002291740.1 502720 D 409438 CDS YP_002291741.1 209917657 6998837 505283..505555 1 NC_011415.1 histone-like DNA-binding protein; transcriptional regulator HU subunit beta 505555 6998837 ECSE_0466 Escherichia coli SE11 transcriptional regulator HU subunit beta YP_002291741.1 505283 D 409438 CDS YP_002291742.1 209917658 6998838 505747..507618 1 NC_011415.1 peptidyl-prolyl cis-trans isomerase (rotamase D) 507618 6998838 ECSE_0467 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase (rotamase D) YP_002291742.1 505747 D 409438 CDS YP_002291743.1 209917659 6998839 507769..508140 1 NC_011415.1 hypothetical protein 508140 6998839 ECSE_0468 Escherichia coli SE11 hypothetical protein YP_002291743.1 507769 D 409438 CDS YP_002291744.1 209917660 6998840 508234..508632 1 NC_011415.1 hypothetical protein 508632 6998840 ECSE_0469 Escherichia coli SE11 hypothetical protein YP_002291744.1 508234 D 409438 CDS YP_002291745.1 209917661 6998841 complement(508684..509379) 1 NC_011415.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His; queuosine biosynthesis protein QueC 509379 6998841 ECSE_0470 Escherichia coli SE11 queuosine biosynthesis protein QueC YP_002291745.1 508684 R 409438 CDS YP_002291746.1 209917662 6998842 complement(509444..511144) 1 NC_011415.1 hypothetical protein 511144 6998842 ECSE_0471 Escherichia coli SE11 hypothetical protein YP_002291746.1 509444 R 409438 CDS YP_002291747.1 209917663 6998843 511244..512062 1 NC_011415.1 hypothetical protein 512062 6998843 ECSE_0472 Escherichia coli SE11 hypothetical protein YP_002291747.1 511244 D 409438 CDS YP_002291748.1 209917664 6998844 512215..512673 1 NC_011415.1 putative transcriptional regulator 512673 6998844 ECSE_0473 Escherichia coli SE11 putative transcriptional regulator YP_002291748.1 512215 D 409438 CDS YP_002291749.1 209917665 6998845 512703..514475 1 NC_011415.1 putative multidrug transporter membrane\ATP-binding components 514475 6998845 ECSE_0474 Escherichia coli SE11 putative multidrug transporter membrane\ATP-binding components YP_002291749.1 512703 D 409438 CDS YP_002291750.1 209917666 6998846 514468..516249 1 NC_011415.1 putative multidrug transporter membrane\ATP-binding components 516249 6998846 ECSE_0475 Escherichia coli SE11 putative multidrug transporter membrane\ATP-binding components YP_002291750.1 514468 D 409438 CDS YP_002291751.1 209917667 6998847 516430..516768 1 NC_011415.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.; nitrogen regulatory protein P-II 2 516768 6998847 ECSE_0476 Escherichia coli SE11 nitrogen regulatory protein P-II 2 YP_002291751.1 516430 D 409438 CDS YP_002291752.1 209917668 6998848 516798..518084 1 NC_011415.1 ammonium transporter 518084 6998848 ECSE_0477 Escherichia coli SE11 ammonium transporter YP_002291752.1 516798 D 409438 CDS YP_002291753.1 209917669 6998849 complement(518132..518992) 1 NC_011415.1 acyl-CoA thioesterase II 518992 6998849 ECSE_0478 Escherichia coli SE11 acyl-CoA thioesterase II YP_002291753.1 518132 R 409438 CDS YP_002291754.1 209917670 6998850 519210..519782 1 NC_011415.1 putative lipoprotein 519782 6998850 ECSE_0479 Escherichia coli SE11 putative lipoprotein YP_002291754.1 519210 D 409438 CDS YP_002291755.1 209917671 6998851 complement(519813..520124) 1 NC_011415.1 hypothetical protein 520124 6998851 ECSE_0480 Escherichia coli SE11 hypothetical protein YP_002291755.1 519813 R 409438 CDS YP_002291756.1 209917672 6998852 520503..520856 1 NC_011415.1 hypothetical protein 520856 6998852 ECSE_0481 Escherichia coli SE11 hypothetical protein YP_002291756.1 520503 D 409438 CDS YP_002291757.1 209917673 6998853 complement(520898..522454) 1 NC_011415.1 hypothetical protein 522454 6998853 ECSE_0482 Escherichia coli SE11 hypothetical protein YP_002291757.1 520898 R 409438 CDS YP_002291758.1 209917674 6998854 complement(522612..523082) 1 NC_011415.1 hypothetical protein 523082 6998854 ECSE_0483 Escherichia coli SE11 hypothetical protein YP_002291758.1 522612 R 409438 CDS YP_002291759.1 209917675 6998855 complement(523198..523749) 1 NC_011415.1 maltose O-acetyltransferase 523749 6998855 ECSE_0484 Escherichia coli SE11 maltose O-acetyltransferase YP_002291759.1 523198 R 409438 CDS YP_002291760.1 209917676 6998856 complement(523920..524138) 1 NC_011415.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins; hemolysin expression-modulating protein 524138 6998856 ECSE_0485 Escherichia coli SE11 hemolysin expression-modulating protein YP_002291760.1 523920 R 409438 CDS YP_002291761.1 209917677 6998857 complement(524164..524538) 1 NC_011415.1 hypothetical protein 524538 6998857 ECSE_0486 Escherichia coli SE11 hypothetical protein YP_002291761.1 524164 R 409438 CDS YP_002291762.1 209917678 6998858 complement(525084..528233) 1 NC_011415.1 acridine efflux pump protein AcrB 528233 6998858 ECSE_0487 Escherichia coli SE11 acridine efflux pump protein AcrB YP_002291762.1 525084 R 409438 CDS YP_002291763.1 209917679 6998859 complement(528256..529449) 1 NC_011415.1 acridine efflux pump protein AcrA 529449 6998859 ECSE_0488 Escherichia coli SE11 acridine efflux pump protein AcrA YP_002291763.1 528256 R 409438 CDS YP_002291764.1 209917680 6998860 529591..530238 1 NC_011415.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine; DNA-binding transcriptional repressor AcrR 530238 6998860 ECSE_0489 Escherichia coli SE11 DNA-binding transcriptional repressor AcrR YP_002291764.1 529591 D 409438 CDS YP_002291765.1 209917681 6998861 530366..533728 1 NC_011415.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 533728 6998861 ECSE_0490 Escherichia coli SE11 potassium efflux protein KefA YP_002291765.1 530366 D 409438 CDS YP_002291766.1 209917682 6998862 complement(533940..534101) 1 NC_011415.1 hypothetical protein 534101 6998862 ECSE_0491 Escherichia coli SE11 hypothetical protein YP_002291766.1 533940 R 409438 CDS YP_002291767.1 209917683 6998863 complement(534115..534642) 1 NC_011415.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks; primosomal replication protein N'' 534642 6998863 ECSE_0492 Escherichia coli SE11 primosomal replication protein N'' YP_002291767.1 534115 R 409438 CDS YP_002291768.1 209917684 6998864 534712..535089 1 NC_011415.1 hypothetical protein 535089 6998864 ECSE_0493 Escherichia coli SE11 hypothetical protein YP_002291768.1 534712 D 409438 CDS YP_002291769.1 209917685 6998865 535242..535793 1 NC_011415.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 535793 6998865 ECSE_0494 Escherichia coli SE11 adenine phosphoribosyltransferase YP_002291769.1 535242 D 409438 CDS YP_002291770.1 209917686 6998866 535922..537853 1 NC_011415.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 537853 6998866 ECSE_0495 Escherichia coli SE11 DNA polymerase III subunits gamma and tau YP_002291770.1 535922 D 409438 CDS YP_002291771.1 209917687 6998867 537906..538235 1 NC_011415.1 hypothetical protein 538235 6998867 ECSE_0496 Escherichia coli SE11 hypothetical protein YP_002291771.1 537906 D 409438 CDS YP_002291772.1 209917688 6998868 538235..538840 1 NC_011415.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 538840 recR 6998868 recR Escherichia coli SE11 recombination protein RecR YP_002291772.1 538235 D 409438 CDS YP_002291773.1 209917689 6998869 538950..540824 1 NC_011415.1 molecular chaperone; heat shock protein 90 540824 6998869 ECSE_0498 Escherichia coli SE11 heat shock protein 90 YP_002291773.1 538950 D 409438 CDS YP_002291774.1 209917690 6998870 541005..541649 1 NC_011415.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 541649 adk 6998870 adk Escherichia coli SE11 adenylate kinase YP_002291774.1 541005 D 409438 CDS YP_002291775.1 209917691 6998871 541885..542847 1 NC_011415.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 542847 hemH 6998871 hemH Escherichia coli SE11 ferrochelatase YP_002291775.1 541885 D 409438 CDS YP_002291776.1 209917692 6998872 complement(542844..543803) 1 NC_011415.1 acetyl esterase 543803 6998872 ECSE_0501 Escherichia coli SE11 acetyl esterase YP_002291776.1 542844 R 409438 CDS YP_002291777.1 209917693 6998873 543955..545259 1 NC_011415.1 inosine-guanosine kinase 545259 6998873 ECSE_0502 Escherichia coli SE11 inosine-guanosine kinase YP_002291777.1 543955 D 409438 CDS YP_002291778.1 209917694 6998874 complement(545342..547018) 1 NC_011415.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein; putative cation:proton antiport protein 547018 6998874 ECSE_0503 Escherichia coli SE11 putative cation:proton antiport protein YP_002291778.1 545342 R 409438 CDS YP_002291779.1 209917695 6998875 complement(547256..548476) 1 NC_011415.1 fosmidomycin resistance protein 548476 6998875 ECSE_0504 Escherichia coli SE11 fosmidomycin resistance protein YP_002291779.1 547256 R 409438 CDS YP_002291780.1 209917696 6998876 548694..550346 1 NC_011415.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides; bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 550346 ushA 6998876 ushA Escherichia coli SE11 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor YP_002291780.1 548694 D 409438 CDS YP_002291781.1 209917697 6998877 complement(550383..550862) 1 NC_011415.1 hypothetical protein 550862 6998877 ECSE_0506 Escherichia coli SE11 hypothetical protein YP_002291781.1 550383 R 409438 CDS YP_002291782.1 209917698 6998878 complement(551066..551860) 1 NC_011415.1 putative ligase 551860 6998878 ECSE_0507 Escherichia coli SE11 putative ligase YP_002291782.1 551066 R 409438 CDS YP_002291783.1 209917699 6998879 551944..552339 1 NC_011415.1 hypothetical protein 552339 6998879 ECSE_0508 Escherichia coli SE11 hypothetical protein YP_002291783.1 551944 D 409438 CDS YP_002291784.1 209917700 6998880 complement(552453..554957) 1 NC_011415.1 copper exporting ATPase 554957 copA 6998880 copA Escherichia coli SE11 copper exporting ATPase YP_002291784.1 552453 R 409438 CDS YP_002291785.1 209917701 6998881 555219..556151 1 NC_011415.1 catalyzes the formation of glutamate from glutamine; glutaminase 556151 6998881 ECSE_0510 Escherichia coli SE11 glutaminase YP_002291785.1 555219 D 409438 CDS YP_002291786.1 209917702 6998882 556154..557446 1 NC_011415.1 amino acid transport protein 557446 6998882 ECSE_0511 Escherichia coli SE11 amino acid transport protein YP_002291786.1 556154 D 409438 CDS YP_002291787.1 209917703 6998883 557571..557978 1 NC_011415.1 activator of copper-responsive regulon genes; DNA-binding transcriptional regulator CueR 557978 6998883 ECSE_0512 Escherichia coli SE11 DNA-binding transcriptional regulator CueR YP_002291787.1 557571 D 409438 CDS YP_002291788.1 209917704 6998884 complement(557979..558437) 1 NC_011415.1 hypothetical protein 558437 6998884 ECSE_0513 Escherichia coli SE11 hypothetical protein YP_002291788.1 557979 R 409438 CDS YP_002291789.1 209917705 6998885 complement(558434..559351) 1 NC_011415.1 hypothetical protein 559351 6998885 ECSE_0514 Escherichia coli SE11 hypothetical protein YP_002291789.1 558434 R 409438 CDS YP_002291790.1 209917706 6998886 559497..560174 1 NC_011415.1 putative ABC transporter ATP-binding protein YbbL 560174 6998886 ECSE_0515 Escherichia coli SE11 putative ABC transporter ATP-binding protein YbbL YP_002291790.1 559497 D 409438 CDS YP_002291791.1 209917707 6998887 560161..560940 1 NC_011415.1 hypothetical protein 560940 6998887 ECSE_0516 Escherichia coli SE11 hypothetical protein YP_002291791.1 560161 D 409438 CDS YP_002291792.1 209917708 6998888 complement(561003..561857) 1 NC_011415.1 putative thioredoxin protein 561857 6998888 ECSE_0517 Escherichia coli SE11 putative thioredoxin protein YP_002291792.1 561003 R 409438 CDS YP_002291793.1 209917709 6998889 complement(561918..562688) 1 NC_011415.1 short chain dehydrogenase 562688 6998889 ECSE_0518 Escherichia coli SE11 short chain dehydrogenase YP_002291793.1 561918 R 409438 CDS YP_002291794.1 209917710 6998890 complement(562717..563340) 1 NC_011415.1 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 563340 6998890 ECSE_0520 Escherichia coli SE11 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 YP_002291794.1 562717 R 409438 CDS YP_002291795.1 209917711 6998892 563311..563997 1 NC_011415.1 putative ABC transporter ATP-binding protein YbbA 563997 6998892 ECSE_0519 Escherichia coli SE11 putative ABC transporter ATP-binding protein YbbA YP_002291795.1 563311 D 409438 CDS YP_002291796.1 209917712 6998891 563994..566408 1 NC_011415.1 putative oxidoreductase 566408 6998891 ECSE_0521 Escherichia coli SE11 putative oxidoreductase YP_002291796.1 563994 D 409438 CDS YP_002291797.1 209917713 6998893 complement(566506..566628) 1 NC_011415.1 hypothetical protein 566628 6998893 ECSE_0522 Escherichia coli SE11 hypothetical protein YP_002291797.1 566506 R 409438 CDS YP_002291798.1 209917714 6998894 566838..571127 1 NC_011415.1 Rhs core protein 571127 6998894 ECSE_0523 Escherichia coli SE11 Rhs core protein YP_002291798.1 566838 D 409438 CDS YP_002291799.1 209917715 6998895 571167..571535 1 NC_011415.1 hypothetical protein 571535 6998895 ECSE_0524 Escherichia coli SE11 hypothetical protein YP_002291799.1 571167 D 409438 CDS YP_002291800.1 209917716 6998896 571535..571804 1 NC_011415.1 putative truncated Rhs core protein 571804 6998896 ECSE_0525 Escherichia coli SE11 putative truncated Rhs core protein YP_002291800.1 571535 D 409438 CDS YP_002291801.1 209917717 6998897 571791..572246 1 NC_011415.1 putative truncated Rhs core protein 572246 6998897 ECSE_0526 Escherichia coli SE11 putative truncated Rhs core protein YP_002291801.1 571791 D 409438 CDS YP_002291802.1 209917718 6998898 572227..572718 1 NC_011415.1 hypothetical protein 572718 6998898 ECSE_0527 Escherichia coli SE11 hypothetical protein YP_002291802.1 572227 D 409438 CDS YP_002291803.1 209917719 6998899 complement(573233..573604) 1 NC_011415.1 hypothetical protein 573604 6998899 ECSE_0528 Escherichia coli SE11 hypothetical protein YP_002291803.1 573233 R 409438 CDS YP_002291804.1 209917720 6998900 complement(573720..574814) 1 NC_011415.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 574814 6998900 ECSE_0529 Escherichia coli SE11 tRNA 2-selenouridine synthase YP_002291804.1 573720 R 409438 CDS YP_002291805.1 209917721 6998901 complement(574883..575809) 1 NC_011415.1 activator of the allDC-ylbA operon involved in allantoin utilization; DNA-binding transcriptional activator AllS 575809 6998901 ECSE_0530 Escherichia coli SE11 DNA-binding transcriptional activator AllS YP_002291805.1 574883 R 409438 CDS YP_002291806.1 209917722 6998902 576039..576521 1 NC_011415.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 576521 6998902 ECSE_0531 Escherichia coli SE11 ureidoglycolate hydrolase YP_002291806.1 576039 D 409438 CDS YP_002291807.1 209917723 6998903 576599..577414 1 NC_011415.1 regulates operons involved in the utilization of allantoin; DNA-binding transcriptional repressor AllR 577414 6998903 ECSE_0532 Escherichia coli SE11 DNA-binding transcriptional repressor AllR YP_002291807.1 576599 D 409438 CDS YP_002291808.1 209917724 6998904 577504..579285 1 NC_011415.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 579285 6998904 ECSE_0533 Escherichia coli SE11 glyoxylate carboligase YP_002291808.1 577504 D 409438 CDS YP_002291809.1 209917725 6998905 579298..580074 1 NC_011415.1 hydroxypyruvate isomerase 580074 6998905 ECSE_0534 Escherichia coli SE11 hydroxypyruvate isomerase YP_002291809.1 579298 D 409438 CDS YP_002291810.1 209917726 6998906 580174..581052 1 NC_011415.1 tartronic semialdehyde reductase 581052 6998906 ECSE_0535 Escherichia coli SE11 tartronic semialdehyde reductase YP_002291810.1 580174 D 409438 CDS YP_002291811.1 209917727 6998907 581222..582676 1 NC_011415.1 allantoin permease 582676 6998907 ECSE_0536 Escherichia coli SE11 allantoin permease YP_002291811.1 581222 D 409438 CDS YP_002291812.1 209917728 6998908 582736..584097 1 NC_011415.1 Plays a crucial role on both purine and pyrimidine metabolism; allantoinase 584097 6998908 ECSE_0537 Escherichia coli SE11 allantoinase YP_002291812.1 582736 D 409438 CDS YP_002291813.1 209917729 6998909 584154..585455 1 NC_011415.1 putative purine permease YbbY 585455 6998909 ECSE_0538 Escherichia coli SE11 putative purine permease YbbY YP_002291813.1 584154 D 409438 CDS YP_002291814.1 209917730 6998910 585477..586622 1 NC_011415.1 glycerate kinase II 586622 6998910 ECSE_0539 Escherichia coli SE11 glycerate kinase II YP_002291814.1 585477 D 409438 CDS YP_002291815.1 209917731 6998911 complement(586751..587536) 1 NC_011415.1 hypothetical protein 587536 6998911 ECSE_0540 Escherichia coli SE11 hypothetical protein YP_002291815.1 586751 R 409438 CDS YP_002291816.1 209917732 6998912 complement(587547..588782) 1 NC_011415.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 588782 6998912 ECSE_0541 Escherichia coli SE11 allantoate amidohydrolase YP_002291816.1 587547 R 409438 CDS YP_002291817.1 209917733 6998913 complement(588804..589853) 1 NC_011415.1 ureidoglycolate dehydrogenase 589853 6998913 ECSE_0542 Escherichia coli SE11 ureidoglycolate dehydrogenase YP_002291817.1 588804 R 409438 CDS YP_002291818.1 209917734 6998914 590170..591837 1 NC_011415.1 multicopy suppressor of dominant negative ftsH mutations; membrane protein FdrA 591837 6998914 ECSE_0543 Escherichia coli SE11 membrane protein FdrA YP_002291818.1 590170 D 409438 CDS YP_002291819.1 209917735 6998915 591847..593106 1 NC_011415.1 hypothetical protein 593106 6998915 ECSE_0544 Escherichia coli SE11 hypothetical protein YP_002291819.1 591847 D 409438 CDS YP_002291820.1 209917736 6998916 593117..593932 1 NC_011415.1 hypothetical protein 593932 6998916 ECSE_0545 Escherichia coli SE11 hypothetical protein YP_002291820.1 593117 D 409438 CDS YP_002291821.1 209917737 6998917 593929..594822 1 NC_011415.1 carbamate kinase 594822 6998917 ECSE_0546 Escherichia coli SE11 carbamate kinase YP_002291821.1 593929 D 409438 CDS YP_002291822.1 209917738 6998918 complement(595027..596094) 1 NC_011415.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 596094 6998918 ECSE_0547 Escherichia coli SE11 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002291822.1 595027 R 409438 CDS YP_002291823.1 209917739 6998919 complement(596091..596600) 1 NC_011415.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 596600 6998919 ECSE_0548 Escherichia coli SE11 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002291823.1 596091 R 409438 CDS YP_002291824.1 209917740 6998920 complement(596718..597440) 1 NC_011415.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 597440 6998920 ECSE_0549 Escherichia coli SE11 UDP-2,3-diacylglucosamine hydrolase YP_002291824.1 596718 R 409438 CDS YP_002291825.1 209917741 6998921 complement(597443..597937) 1 NC_011415.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) 597937 6998921 ECSE_0550 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase B (rotamase B) YP_002291825.1 597443 R 409438 CDS YP_002291826.1 209917742 6998922 598111..599496 1 NC_011415.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 599496 cysS 6998922 cysS Escherichia coli SE11 cysteinyl-tRNA synthetase YP_002291826.1 598111 D 409438 CDS YP_002291827.1 209917743 6998923 complement(599532..600053) 1 NC_011415.1 hypothetical protein 600053 6998923 ECSE_0552 Escherichia coli SE11 hypothetical protein YP_002291827.1 599532 R 409438 CDS YP_002291828.1 209917744 6998924 complement(600161..600394) 1 NC_011415.1 hypothetical protein 600394 6998924 ECSE_0553 Escherichia coli SE11 hypothetical protein YP_002291828.1 600161 R 409438 CDS YP_002291829.1 209917745 6998925 complement(600375..601241) 1 NC_011415.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 601241 6998925 ECSE_0554 Escherichia coli SE11 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002291829.1 600375 R 409438 CDS YP_002291830.1 209917746 6998926 601722..602264 1 NC_011415.1 putative fimbrial protein 602264 6998926 ECSE_0555 Escherichia coli SE11 putative fimbrial protein YP_002291830.1 601722 D 409438 CDS YP_002291831.1 209917747 6998927 602484..603176 1 NC_011415.1 putative fimbrial chaperone 603176 6998927 ECSE_0556 Escherichia coli SE11 putative fimbrial chaperone YP_002291831.1 602484 D 409438 CDS YP_002291832.1 209917748 6998928 603207..605816 1 NC_011415.1 putative fimbrial usher protein 605816 6998928 ECSE_0557 Escherichia coli SE11 putative fimbrial usher protein YP_002291832.1 603207 D 409438 CDS YP_002291833.1 209917749 6998929 605829..606836 1 NC_011415.1 putative fimbrial protein 606836 6998929 ECSE_0558 Escherichia coli SE11 putative fimbrial protein YP_002291833.1 605829 D 409438 CDS YP_002291834.1 209917750 6998930 606847..607362 1 NC_011415.1 putative fimbrial protein 607362 6998930 ECSE_0559 Escherichia coli SE11 putative fimbrial protein YP_002291834.1 606847 D 409438 CDS YP_002291835.1 209917751 6998931 complement(607365..608012) 1 NC_011415.1 activates the production of the major fimbrae protein FimA; transcriptional regulator FimZ 608012 6998931 ECSE_0560 Escherichia coli SE11 transcriptional regulator FimZ YP_002291835.1 607365 R 409438 CDS YP_002291836.1 209917752 7003077 complement(608332..609495) 1 NC_011415.1 phage integrase 609495 7003077 ECSE_0561 Escherichia coli SE11 phage integrase YP_002291836.1 608332 R 409438 CDS YP_002291837.1 209917753 6998933 complement(609694..609972) 1 NC_011415.1 hypothetical protein 609972 6998933 ECSE_0562 Escherichia coli SE11 hypothetical protein YP_002291837.1 609694 R 409438 CDS YP_002291838.1 209917754 6998934 610552..611184 1 NC_011415.1 hypothetical protein 611184 6998934 ECSE_0563 Escherichia coli SE11 hypothetical protein YP_002291838.1 610552 D 409438 CDS YP_002291839.1 209917755 6998935 611181..611783 1 NC_011415.1 hypothetical protein 611783 6998935 ECSE_0564 Escherichia coli SE11 hypothetical protein YP_002291839.1 611181 D 409438 CDS YP_002291840.1 209917756 6998936 complement(611795..613039) 1 NC_011415.1 hypothetical protein 613039 6998936 ECSE_0565 Escherichia coli SE11 hypothetical protein YP_002291840.1 611795 R 409438 CDS YP_002291841.1 209917757 6998937 complement(613036..613200) 1 NC_011415.1 hypothetical protein 613200 6998937 ECSE_0566 Escherichia coli SE11 hypothetical protein YP_002291841.1 613036 R 409438 CDS YP_002291842.1 209917758 6998938 complement(613191..613871) 1 NC_011415.1 phage exonuclease 613871 6998938 ECSE_0567 Escherichia coli SE11 phage exonuclease YP_002291842.1 613191 R 409438 CDS YP_002291843.1 209917759 6998939 complement(613868..614653) 1 NC_011415.1 phage recombination protein 614653 6998939 ECSE_0568 Escherichia coli SE11 phage recombination protein YP_002291843.1 613868 R 409438 CDS YP_002291844.1 209917760 6998940 complement(614659..614955) 1 NC_011415.1 phage host-nuclease inhibitor protein 614955 6998940 ECSE_0569 Escherichia coli SE11 phage host-nuclease inhibitor protein YP_002291844.1 614659 R 409438 CDS YP_002291845.1 209917761 6998941 complement(615787..616230) 1 NC_011415.1 hypothetical protein 616230 6998941 ECSE_0570 Escherichia coli SE11 hypothetical protein YP_002291845.1 615787 R 409438 CDS YP_002291846.1 209917762 6998942 complement(616243..616506) 1 NC_011415.1 hypothetical protein 616506 6998942 ECSE_0571 Escherichia coli SE11 hypothetical protein YP_002291846.1 616243 R 409438 CDS YP_002291847.1 209917763 6998943 complement(616589..617281) 1 NC_011415.1 phage transcriptional regulator 617281 6998943 ECSE_0572 Escherichia coli SE11 phage transcriptional regulator YP_002291847.1 616589 R 409438 CDS YP_002291848.1 209917764 6998944 617392..617619 1 NC_011415.1 hypothetical protein 617619 6998944 ECSE_0573 Escherichia coli SE11 hypothetical protein YP_002291848.1 617392 D 409438 CDS YP_002291849.1 209917765 6998945 617644..618189 1 NC_011415.1 hypothetical protein 618189 6998945 ECSE_0574 Escherichia coli SE11 hypothetical protein YP_002291849.1 617644 D 409438 CDS YP_002291850.1 209917766 6998946 618276..619205 1 NC_011415.1 putative phage replication protein 619205 6998946 ECSE_0575 Escherichia coli SE11 putative phage replication protein YP_002291850.1 618276 D 409438 CDS YP_002291851.1 209917767 6998947 619202..619903 1 NC_011415.1 phage replication protein P 619903 6998947 ECSE_0576 Escherichia coli SE11 phage replication protein P YP_002291851.1 619202 D 409438 CDS YP_002291852.1 209917768 6998948 619900..620202 1 NC_011415.1 phage exclusion protein 620202 6998948 ECSE_0577 Escherichia coli SE11 phage exclusion protein YP_002291852.1 619900 D 409438 CDS YP_002291853.1 209917769 6998949 620270..620602 1 NC_011415.1 member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; multidrug efflux protein 620602 emrE 6998949 emrE Escherichia coli SE11 multidrug efflux protein YP_002291853.1 620270 D 409438 CDS YP_002291854.1 209917770 6998950 620859..622385 1 NC_011415.1 putative phage recombinase 622385 6998950 ECSE_0579 Escherichia coli SE11 putative phage recombinase YP_002291854.1 620859 D 409438 CDS YP_002291855.1 209917771 6998951 complement(622608..622820) 1 NC_011415.1 hypothetical protein 622820 6998951 ECSE_0580 Escherichia coli SE11 hypothetical protein YP_002291855.1 622608 R 409438 CDS YP_002291856.1 209917772 6998952 623308..623763 1 NC_011415.1 DLP12 prophage; hypothetical protein 623763 6998952 ECSE_0581 Escherichia coli SE11 hypothetical protein YP_002291856.1 623308 D 409438 CDS YP_002291857.1 209917773 6998953 623763..623933 1 NC_011415.1 DLP12 prophage; conserved protein similar to phage 82 and lambda proteins; prophage protein NinE 623933 6998953 ECSE_0582 Escherichia coli SE11 prophage protein NinE YP_002291857.1 623763 D 409438 CDS YP_002291858.1 209917774 6998954 623926..624216 1 NC_011415.1 hypothetical protein 624216 6998954 ECSE_0583 Escherichia coli SE11 hypothetical protein YP_002291858.1 623926 D 409438 CDS YP_002291859.1 209917775 6998955 624213..624575 1 NC_011415.1 DLP12 prophage; Holliday junction resolvase; endodeoxyribonuclease RUS 624575 6998955 ECSE_0584 Escherichia coli SE11 endodeoxyribonuclease RUS YP_002291859.1 624213 D 409438 CDS YP_002291860.1 209917776 6998956 624572..624712 1 NC_011415.1 hypothetical protein 624712 6998956 ECSE_0585 Escherichia coli SE11 hypothetical protein YP_002291860.1 624572 D 409438 CDS YP_002291861.1 209917777 6998957 624798..625181 1 NC_011415.1 putative phage antitermination protein 625181 6998957 ECSE_0586 Escherichia coli SE11 putative phage antitermination protein YP_002291861.1 624798 D 409438 CDS YP_002291862.1 209917778 6998958 complement(625371..626468) 1 NC_011415.1 putative outer membrane porin protein 626468 6998958 ECSE_0587 Escherichia coli SE11 putative outer membrane porin protein YP_002291862.1 625371 R 409438 CDS YP_002291863.1 209917779 6998959 627057..627272 1 NC_011415.1 putative phage lysis protein 627272 6998959 ECSE_0588 Escherichia coli SE11 putative phage lysis protein YP_002291863.1 627057 D 409438 CDS YP_002291864.1 209917780 6998960 627272..627769 1 NC_011415.1 putative phage lysozyme 627769 6998960 ECSE_0589 Escherichia coli SE11 putative phage lysozyme YP_002291864.1 627272 D 409438 CDS YP_002291865.1 209917781 6998961 627766..628227 1 NC_011415.1 putative phage endopeptidase 628227 6998961 ECSE_0590 Escherichia coli SE11 putative phage endopeptidase YP_002291865.1 627766 D 409438 CDS YP_002291866.1 209917782 6998962 complement(628259..628552) 1 NC_011415.1 hypothetical protein 628552 6998962 ECSE_0591 Escherichia coli SE11 hypothetical protein YP_002291866.1 628259 R 409438 CDS YP_002291867.1 209917783 6998963 complement(628915..629109) 1 NC_011415.1 hypothetical protein 629109 6998963 ECSE_0592 Escherichia coli SE11 hypothetical protein YP_002291867.1 628915 R 409438 CDS YP_002291868.1 209917784 6998964 629499..630044 1 NC_011415.1 phage DNA packaging protein small subunit 630044 6998964 ECSE_0593 Escherichia coli SE11 phage DNA packaging protein small subunit YP_002291868.1 629499 D 409438 CDS YP_002291869.1 209917785 6998965 630019..631944 1 NC_011415.1 phage DNA packaging protein large subunit 631944 6998965 ECSE_0594 Escherichia coli SE11 phage DNA packaging protein large subunit YP_002291869.1 630019 D 409438 CDS YP_002291870.1 209917786 6998966 631941..632147 1 NC_011415.1 putative phage head-tail joining protein 632147 6998966 ECSE_0595 Escherichia coli SE11 putative phage head-tail joining protein YP_002291870.1 631941 D 409438 CDS YP_002291871.1 209917787 6998967 632144..633745 1 NC_011415.1 putative phage capsid structural protein 633745 6998967 ECSE_0596 Escherichia coli SE11 putative phage capsid structural protein YP_002291871.1 632144 D 409438 CDS YP_002291872.1 209917788 6998968 633726..635045 1 NC_011415.1 putative phage minor capsid protein 635045 6998968 ECSE_0597 Escherichia coli SE11 putative phage minor capsid protein YP_002291872.1 633726 D 409438 CDS YP_002291873.1 209917789 6998969 635055..635387 1 NC_011415.1 phage major capsid protein 635387 6998969 ECSE_0598 Escherichia coli SE11 phage major capsid protein YP_002291873.1 635055 D 409438 CDS YP_002291874.1 209917790 6998970 635443..636468 1 NC_011415.1 phage major capsid protein 636468 6998970 ECSE_0599 Escherichia coli SE11 phage major capsid protein YP_002291874.1 635443 D 409438 CDS YP_002291875.1 209917791 6998971 636510..636905 1 NC_011415.1 putative phage DNA packaging protein 636905 6998971 ECSE_0600 Escherichia coli SE11 putative phage DNA packaging protein YP_002291875.1 636510 D 409438 CDS YP_002291876.1 209917792 6998972 636917..637270 1 NC_011415.1 putative phage head-tail joining protein 637270 6998972 ECSE_0601 Escherichia coli SE11 putative phage head-tail joining protein YP_002291876.1 636917 D 409438 CDS YP_002291877.1 209917793 6998973 637282..637860 1 NC_011415.1 putative phage tail fiber component 637860 6998973 ECSE_0602 Escherichia coli SE11 putative phage tail fiber component YP_002291877.1 637282 D 409438 CDS YP_002291878.1 209917794 6998974 637857..638252 1 NC_011415.1 putative phage tail fiber component 638252 6998974 ECSE_0603 Escherichia coli SE11 putative phage tail fiber component YP_002291878.1 637857 D 409438 CDS YP_002291879.1 209917795 6998975 638260..639000 1 NC_011415.1 putative phage tail fiber component 639000 6998975 ECSE_0604 Escherichia coli SE11 putative phage tail fiber component YP_002291879.1 638260 D 409438 CDS YP_002291880.1 209917796 6998976 639016..639438 1 NC_011415.1 putative phage tail fiber component 639438 6998976 ECSE_0605 Escherichia coli SE11 putative phage tail fiber component YP_002291880.1 639016 D 409438 CDS YP_002291881.1 209917797 6998977 639420..639854 1 NC_011415.1 putative phage tail fiber component 639854 6998977 ECSE_0606 Escherichia coli SE11 putative phage tail fiber component YP_002291881.1 639420 D 409438 CDS YP_002291882.1 209917798 6998978 639847..642408 1 NC_011415.1 putative phage tail length tape measure protein 642408 6998978 ECSE_0607 Escherichia coli SE11 putative phage tail length tape measure protein YP_002291882.1 639847 D 409438 CDS YP_002291883.1 209917799 6998979 642405..642734 1 NC_011415.1 putative phage tail fiber component 642734 6998979 ECSE_0608 Escherichia coli SE11 putative phage tail fiber component YP_002291883.1 642405 D 409438 CDS YP_002291884.1 209917800 6998980 642734..643432 1 NC_011415.1 putative phage tail fiber component 643432 6998980 ECSE_0609 Escherichia coli SE11 putative phage tail fiber component YP_002291884.1 642734 D 409438 CDS YP_002291885.1 209917801 6998981 643438..644181 1 NC_011415.1 putative phage tail fiber component 644181 6998981 ECSE_0610 Escherichia coli SE11 putative phage tail fiber component YP_002291885.1 643438 D 409438 CDS YP_002291886.1 209917802 6998982 644079..644750 1 NC_011415.1 putative phage tail fiber component 644750 6998982 ECSE_0611 Escherichia coli SE11 putative phage tail fiber component YP_002291886.1 644079 D 409438 CDS YP_002291887.1 209917803 6998983 644811..648308 1 NC_011415.1 putative phage host specificity protein 648308 6998983 ECSE_0612 Escherichia coli SE11 putative phage host specificity protein YP_002291887.1 644811 D 409438 CDS YP_002291888.1 209917804 6998984 648379..648978 1 NC_011415.1 putative phage outer membrane protein 648978 6998984 ECSE_0613 Escherichia coli SE11 putative phage outer membrane protein YP_002291888.1 648379 D 409438 CDS YP_002291889.1 209917805 6998985 649037..652003 1 NC_011415.1 hypothetical protein 652003 6998985 ECSE_0614 Escherichia coli SE11 hypothetical protein YP_002291889.1 649037 D 409438 CDS YP_002291890.1 209917806 6998986 652003..652578 1 NC_011415.1 putative phage tail assembly protein 652578 6998986 ECSE_0615 Escherichia coli SE11 putative phage tail assembly protein YP_002291890.1 652003 D 409438 CDS YP_002291891.1 209917807 6998987 complement(652676..653266) 1 NC_011415.1 putative phage resolvase 653266 6998987 ECSE_0616 Escherichia coli SE11 putative phage resolvase YP_002291891.1 652676 R 409438 CDS YP_002291892.1 209917808 6998988 complement(653583..653849) 1 NC_011415.1 hypothetical protein 653849 6998988 ECSE_0617 Escherichia coli SE11 hypothetical protein YP_002291892.1 653583 R 409438 CDS YP_002291893.1 209917809 6998989 complement(654364..655032) 1 NC_011415.1 hypothetical protein 655032 6998989 ECSE_0618 Escherichia coli SE11 hypothetical protein YP_002291893.1 654364 R 409438 CDS YP_002291894.1 209917810 6998990 655089..655394 1 NC_011415.1 hypothetical protein 655394 6998990 ECSE_0619 Escherichia coli SE11 hypothetical protein YP_002291894.1 655089 D 409438 CDS YP_002291895.1 209917811 6998991 complement(655577..657061) 1 NC_011415.1 hypothetical protein 657061 6998991 ECSE_0620 Escherichia coli SE11 hypothetical protein YP_002291895.1 655577 R 409438 CDS YP_002291896.1 209917812 6998992 complement(657248..658201) 1 NC_011415.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA; outer membrane protease 658201 6998992 ECSE_0621 Escherichia coli SE11 outer membrane protease YP_002291896.1 657248 R 409438 CDS YP_002291897.1 209917813 6998993 complement(658714..659475) 1 NC_011415.1 putative phage envelope protein 659475 6998993 ECSE_0622 Escherichia coli SE11 putative phage envelope protein YP_002291897.1 658714 R 409438 CDS YP_002291898.1 209917814 6998994 complement(659658..660548) 1 NC_011415.1 hypothetical protein 660548 6998994 ECSE_0623 Escherichia coli SE11 hypothetical protein YP_002291898.1 659658 R 409438 CDS YP_002291899.1 209917815 6998995 complement(660549..663521) 1 NC_011415.1 bacteriophage N4 receptor, outer membrane subunit 663521 6998995 ECSE_0624 Escherichia coli SE11 bacteriophage N4 receptor, outer membrane subunit YP_002291899.1 660549 R 409438 CDS YP_002291900.1 209917816 6998996 complement(663508..665745) 1 NC_011415.1 bacteriophage N4 adsorption protein B 665745 nfrB 6998996 nfrB Escherichia coli SE11 bacteriophage N4 adsorption protein B YP_002291900.1 663508 R 409438 CDS YP_002291901.1 209917817 6998997 complement(666014..667150) 1 NC_011415.1 H repeat-associated protein 667150 6998997 ECSE_0626 Escherichia coli SE11 H repeat-associated protein YP_002291901.1 666014 R 409438 CDS YP_002291902.1 209917818 6998998 complement(667254..667565) 1 NC_011415.1 hypothetical protein 667565 6998998 ECSE_0627 Escherichia coli SE11 hypothetical protein YP_002291902.1 667254 R 409438 CDS YP_002291903.1 209917819 6998999 complement(667680..667931) 1 NC_011415.1 hypothetical protein 667931 6998999 ECSE_0628 Escherichia coli SE11 hypothetical protein YP_002291903.1 667680 R 409438 CDS YP_002291904.1 209917820 6999000 complement(667928..670855) 1 NC_011415.1 putative truncated Rhs core protein 670855 6999000 ECSE_0629 Escherichia coli SE11 putative truncated Rhs core protein YP_002291904.1 667928 R 409438 CDS YP_002291905.1 209917821 6999001 complement(670982..671503) 1 NC_011415.1 hypothetical protein 671503 6999001 ECSE_0630 Escherichia coli SE11 hypothetical protein YP_002291905.1 670982 R 409438 CDS YP_002291906.1 209917822 6999002 complement(671503..676362) 1 NC_011415.1 Rhs core protein 676362 6999002 ECSE_0631 Escherichia coli SE11 Rhs core protein YP_002291906.1 671503 R 409438 CDS YP_002291907.1 209917823 6999003 complement(676382..676843) 1 NC_011415.1 hypothetical protein 676843 6999003 ECSE_0632 Escherichia coli SE11 hypothetical protein YP_002291907.1 676382 R 409438 CDS YP_002291908.1 209917824 6999004 complement(676871..678772) 1 NC_011415.1 hypothetical protein 678772 6999004 ECSE_0633 Escherichia coli SE11 hypothetical protein YP_002291908.1 676871 R 409438 CDS YP_002291909.1 209917825 6999005 complement(679509..680957) 1 NC_011415.1 sensor kinase CusS 680957 6999005 ECSE_0634 Escherichia coli SE11 sensor kinase CusS YP_002291909.1 679509 R 409438 CDS YP_002291910.1 209917826 6999006 complement(680947..681630) 1 NC_011415.1 response regulator in two-component regulatory system with CusS; regulates the copper efflux system; DNA-binding transcriptional activator CusR 681630 6999006 ECSE_0635 Escherichia coli SE11 DNA-binding transcriptional activator CusR YP_002291910.1 680947 R 409438 CDS YP_002291911.1 209917827 6999007 681787..683169 1 NC_011415.1 with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system outer membrane protein CusC 683169 6999007 ECSE_0636 Escherichia coli SE11 copper/silver efflux system outer membrane protein CusC YP_002291911.1 681787 D 409438 CDS YP_002291912.1 209917828 6999008 683193..683525 1 NC_011415.1 periplasmic copper-binding protein 683525 6999008 ECSE_0637 Escherichia coli SE11 periplasmic copper-binding protein YP_002291912.1 683193 D 409438 CDS YP_002291913.1 209917829 6999009 683541..684764 1 NC_011415.1 with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver; copper/silver efflux system membrane fusion protein CusB 684764 6999009 ECSE_0638 Escherichia coli SE11 copper/silver efflux system membrane fusion protein CusB YP_002291913.1 683541 D 409438 CDS YP_002291914.1 209917830 6999010 684776..687919 1 NC_011415.1 putative cation efflux system protein CusA 687919 6999010 ECSE_0639 Escherichia coli SE11 putative cation efflux system protein CusA YP_002291914.1 684776 D 409438 CDS YP_002291915.1 209917831 6999011 688021..689397 1 NC_011415.1 phenylalanine transporter 689397 6999011 ECSE_0640 Escherichia coli SE11 phenylalanine transporter YP_002291915.1 688021 D 409438 CDS YP_002291916.1 209917832 6999012 complement(689465..690712) 1 NC_011415.1 putative transport protein 690712 6999012 ECSE_0641 Escherichia coli SE11 putative transport protein YP_002291916.1 689465 R 409438 CDS YP_002291917.1 209917833 6999013 complement(690820..691473) 1 NC_011415.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 691473 6999013 ECSE_0642 Escherichia coli SE11 dihydropteridine reductase YP_002291917.1 690820 R 409438 CDS YP_002291918.1 209917834 6999014 complement(691567..691935) 1 NC_011415.1 hypothetical protein 691935 6999014 ECSE_0643 Escherichia coli SE11 hypothetical protein YP_002291918.1 691567 R 409438 CDS YP_002291919.1 209917835 6999015 complement(692000..692248) 1 NC_011415.1 hypothetical protein 692248 6999015 ECSE_0644 Escherichia coli SE11 hypothetical protein YP_002291919.1 692000 R 409438 CDS YP_002291920.1 209917836 6999016 complement(692314..693432) 1 NC_011415.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 693432 6999016 ECSE_0645 Escherichia coli SE11 carboxylate-amine ligase YP_002291920.1 692314 R 409438 CDS YP_002291921.1 209917837 6999017 693838..694026 1 NC_011415.1 hypothetical protein 694026 6999017 ECSE_0646 Escherichia coli SE11 hypothetical protein YP_002291921.1 693838 D 409438 CDS YP_002291922.1 209917838 6999018 694278..694529 1 NC_011415.1 hypothetical protein 694529 6999018 ECSE_0647 Escherichia coli SE11 hypothetical protein YP_002291922.1 694278 D 409438 CDS YP_002291923.1 209917839 6999019 complement(694651..695280) 1 NC_011415.1 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 695280 6999019 ECSE_0648 Escherichia coli SE11 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex YP_002291923.1 694651 R 409438 CDS YP_002291924.1 209917840 6999020 complement(695446..697686) 1 NC_011415.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space; outer membrane receptor FepA 697686 6999020 ECSE_0649 Escherichia coli SE11 outer membrane receptor FepA YP_002291924.1 695446 R 409438 CDS YP_002291925.1 209917841 6999021 697730..697954 1 NC_011415.1 hypothetical protein 697954 6999021 ECSE_0650 Escherichia coli SE11 hypothetical protein YP_002291925.1 697730 D 409438 CDS YP_002291926.1 209917842 6999022 698007..699131 1 NC_011415.1 enterobactin/ferric enterobactin esterase 699131 6999022 ECSE_0651 Escherichia coli SE11 enterobactin/ferric enterobactin esterase YP_002291926.1 698007 D 409438 CDS YP_002291927.1 209917843 6999023 699134..699352 1 NC_011415.1 hypothetical protein 699352 6999023 ECSE_0652 Escherichia coli SE11 hypothetical protein YP_002291927.1 699134 D 409438 CDS YP_002291928.1 209917844 6999024 699349..703230 1 NC_011415.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin; enterobactin synthase subunit F 703230 entF 6999024 entF Escherichia coli SE11 enterobactin synthase subunit F YP_002291928.1 699349 D 409438 CDS YP_002291929.1 209917845 6999025 703446..704579 1 NC_011415.1 part of the ferric enterobactin transport system; necessary for enetrobactin uptake; ferric enterobactin transport protein FepE 704579 6999025 ECSE_0654 Escherichia coli SE11 ferric enterobactin transport protein FepE YP_002291929.1 703446 D 409438 CDS YP_002291930.1 209917846 6999026 complement(704576..705391) 1 NC_011415.1 with FepBDE is involved in the transport of ferric enterobactin; iron-enterobactin transporter ATP-binding protein 705391 6999026 ECSE_0655 Escherichia coli SE11 iron-enterobactin transporter ATP-binding protein YP_002291930.1 704576 R 409438 CDS YP_002291931.1 209917847 6999027 complement(705388..706380) 1 NC_011415.1 with FepBCD is involved in the transport of ferric enterobactin; iron-enterobactin transporter permease 706380 6999027 ECSE_0656 Escherichia coli SE11 iron-enterobactin transporter permease YP_002291931.1 705388 R 409438 CDS YP_002291932.1 209917848 6999028 complement(706377..707393) 1 NC_011415.1 with FepBCG is involved in the transport of ferric enterobactin; iron-enterobactin transporter membrane protein 707393 6999028 ECSE_0657 Escherichia coli SE11 iron-enterobactin transporter membrane protein YP_002291932.1 706377 R 409438 CDS YP_002291933.1 209917849 6999029 707492..708742 1 NC_011415.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters; enterobactin exporter EntS 708742 6999029 ECSE_0658 Escherichia coli SE11 enterobactin exporter EntS YP_002291933.1 707492 D 409438 CDS YP_002291934.1 209917850 6999030 complement(708746..709702) 1 NC_011415.1 with FepCDG is involved in the transport of ferric enterobactin; iron-enterobactin transporter periplasmic binding protein 709702 6999030 ECSE_0659 Escherichia coli SE11 iron-enterobactin transporter periplasmic binding protein YP_002291934.1 708746 R 409438 CDS YP_002291935.1 209917851 6999031 709891..711066 1 NC_011415.1 isochorismate synthase 711066 6999031 ECSE_0660 Escherichia coli SE11 isochorismate synthase YP_002291935.1 709891 D 409438 CDS YP_002291936.1 209917852 6999032 711076..712686 1 NC_011415.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate; enterobactin synthase subunit E 712686 entE 6999032 entE Escherichia coli SE11 enterobactin synthase subunit E YP_002291936.1 711076 D 409438 CDS YP_002291937.1 209917853 6999033 712700..713557 1 NC_011415.1 2,3-dihydro-2,3-dihydroxybenzoate synthase 713557 6999033 ECSE_0662 Escherichia coli SE11 2,3-dihydro-2,3-dihydroxybenzoate synthase YP_002291937.1 712700 D 409438 CDS YP_002291938.1 209917854 6999034 713557..714303 1 NC_011415.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin; 2,3-dihydroxybenzoate-2,3-dehydrogenase 714303 6999034 ECSE_0663 Escherichia coli SE11 2,3-dihydroxybenzoate-2,3-dehydrogenase YP_002291938.1 713557 D 409438 CDS YP_002291939.1 209917855 6999035 714306..714719 1 NC_011415.1 hypothetical protein 714719 6999035 ECSE_0664 Escherichia coli SE11 hypothetical protein YP_002291939.1 714306 D 409438 CDS YP_002291940.1 209917856 6999036 714900..717005 1 NC_011415.1 carbon starvation protein 717005 6999036 ECSE_0665 Escherichia coli SE11 carbon starvation protein YP_002291940.1 714900 D 409438 CDS YP_002291941.1 209917857 6999037 717187..717384 1 NC_011415.1 hypothetical protein 717384 6999037 ECSE_0666 Escherichia coli SE11 hypothetical protein YP_002291941.1 717187 D 409438 CDS YP_002291942.1 209917858 6999038 complement(717394..718482) 1 NC_011415.1 member of the iron-containing alcohol dehydrogenase family; unknown function; hypothetical protein 718482 6999038 ECSE_0667 Escherichia coli SE11 hypothetical protein YP_002291942.1 717394 R 409438 CDS YP_002291943.1 209917859 6999039 718591..719751 1 NC_011415.1 catalyzes the transfer of an amino moiety; putative aminotransferase 719751 6999039 ECSE_0668 Escherichia coli SE11 putative aminotransferase YP_002291943.1 718591 D 409438 CDS YP_002291944.1 209917860 6999040 complement(719752..720369) 1 NC_011415.1 hypothetical protein 720369 6999040 ECSE_0669 Escherichia coli SE11 hypothetical protein YP_002291944.1 719752 R 409438 CDS YP_002291945.1 209917861 6999041 complement(720354..721574) 1 NC_011415.1 hypothetical protein 721574 6999041 ECSE_0670 Escherichia coli SE11 hypothetical protein YP_002291945.1 720354 R 409438 CDS YP_002291946.1 209917862 6999042 complement(721721..722623) 1 NC_011415.1 putative transcriptional regulator 722623 6999042 ECSE_0671 Escherichia coli SE11 putative transcriptional regulator YP_002291946.1 721721 R 409438 CDS YP_002291947.1 209917863 6999043 complement(722832..723638) 1 NC_011415.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 723638 dsbG 6999043 dsbG Escherichia coli SE11 disulfide isomerase/thiol-disulfide oxidase YP_002291947.1 722832 R 409438 CDS YP_002291948.1 209917864 6999044 723950..724513 1 NC_011415.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 724513 6999044 ECSE_0673 Escherichia coli SE11 alkyl hydroperoxide reductase subunit C YP_002291948.1 723950 D 409438 CDS YP_002291949.1 209917865 6999045 724612..726207 1 NC_011415.1 alkyl hydroperoxide reductase subunit F 726207 6999045 ECSE_0674 Escherichia coli SE11 alkyl hydroperoxide reductase subunit F YP_002291949.1 724612 D 409438 CDS YP_002291950.1 209917866 6999046 complement(726328..726756) 1 NC_011415.1 hypothetical protein 726756 6999046 ECSE_0675 Escherichia coli SE11 hypothetical protein YP_002291950.1 726328 R 409438 CDS YP_002291951.1 209917867 6999047 726977..728215 1 NC_011415.1 putative oxidoreductase 728215 6999047 ECSE_0676 Escherichia coli SE11 putative oxidoreductase YP_002291951.1 726977 D 409438 CDS YP_002291952.1 209917868 6999048 complement(728219..728347) 1 NC_011415.1 hypothetical protein 728347 6999048 ECSE_0677 Escherichia coli SE11 hypothetical protein YP_002291952.1 728219 R 409438 CDS YP_002291953.1 209917869 6999049 complement(728446..728856) 1 NC_011415.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 728856 6999049 ECSE_0678 Escherichia coli SE11 nucleoside diphosphate kinase regulator YP_002291953.1 728446 R 409438 CDS YP_002291954.1 209917870 6999050 complement(729086..729892) 1 NC_011415.1 ribonuclease I 729892 6999050 ECSE_0679 Escherichia coli SE11 ribonuclease I YP_002291954.1 729086 R 409438 CDS YP_002291955.1 209917871 6999051 complement(730006..731469) 1 NC_011415.1 citrate:succinate transport protein 731469 6999051 ECSE_0680 Escherichia coli SE11 citrate:succinate transport protein YP_002291955.1 730006 R 409438 CDS YP_002291956.1 209917872 6999052 complement(731520..732398) 1 NC_011415.1 catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA; triphosphoribosyl-dephospho-CoA synthase 732398 citG 6999052 citG Escherichia coli SE11 triphosphoribosyl-dephospho-CoA synthase YP_002291956.1 731520 R 409438 CDS YP_002291957.1 209917873 6999053 complement(732373..732924) 1 NC_011415.1 2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase; holo-citrate lyase synthase; CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate; 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 732924 citX 6999053 citX Escherichia coli SE11 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase YP_002291957.1 732373 R 409438 CDS YP_002291958.1 209917874 6999054 complement(732928..734460) 1 NC_011415.1 citrate lyase alpha subunit 734460 6999054 ECSE_0683 Escherichia coli SE11 citrate lyase alpha subunit YP_002291958.1 732928 R 409438 CDS YP_002291959.1 209917875 6999055 complement(734471..735379) 1 NC_011415.1 citrate lyase beta subunit 735379 6999055 ECSE_0684 Escherichia coli SE11 citrate lyase beta subunit YP_002291959.1 734471 R 409438 CDS YP_002291960.1 209917876 6999056 complement(735376..735672) 1 NC_011415.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 735672 6999056 ECSE_0685 Escherichia coli SE11 citrate lyase subunit gamma YP_002291960.1 735376 R 409438 CDS YP_002291961.1 209917877 6999057 complement(735687..736832) 1 NC_011415.1 citrate lyase synthase 736832 6999057 ECSE_0686 Escherichia coli SE11 citrate lyase synthase YP_002291961.1 735687 R 409438 CDS YP_002291962.1 209917878 6999058 737125..738783 1 NC_011415.1 two-component sensor kinase 738783 6999058 ECSE_0687 Escherichia coli SE11 two-component sensor kinase YP_002291962.1 737125 D 409438 CDS YP_002291963.1 209917879 6999059 738752..739432 1 NC_011415.1 regulates the expression of citAB in citrate fermentation; two-component response regulator DpiA 739432 dpiA 6999059 dpiA Escherichia coli SE11 two-component response regulator DpiA YP_002291963.1 738752 D 409438 CDS YP_002291964.1 209917880 6999060 complement(739473..740858) 1 NC_011415.1 responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC 740858 dcuC 6999060 dcuC Escherichia coli SE11 C4-dicarboxylate transporter DcuC YP_002291964.1 739473 R 409438 CDS YP_002291965.1 209917881 6999061 741446..742006 1 NC_011415.1 catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 742006 pagP 6999061 pagP Escherichia coli SE11 palmitoyl transferase YP_002291965.1 741446 D 409438 CDS YP_002291966.1 209917882 6999062 742181..742390 1 NC_011415.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator; cold shock protein CspE 742390 cspE 6999062 cspE Escherichia coli SE11 cold shock protein CspE YP_002291966.1 742181 D 409438 CDS YP_002291967.1 209917883 6999063 complement(742445..742828) 1 NC_011415.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 742828 6999063 ECSE_0692 Escherichia coli SE11 camphor resistance protein CrcB YP_002291967.1 742445 R 409438 CDS YP_002291968.1 209917884 6999064 742921..743709 1 NC_011415.1 hypothetical protein 743709 6999064 ECSE_0693 Escherichia coli SE11 hypothetical protein YP_002291968.1 742921 D 409438 CDS YP_002291969.1 209917885 6999065 743838..744041 1 NC_011415.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein E 744041 tatE 6999065 tatE Escherichia coli SE11 twin arginine translocase protein E YP_002291969.1 743838 D 409438 CDS YP_002291970.1 209917886 6999066 complement(744142..745107) 1 NC_011415.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 745107 6999066 ECSE_0695 Escherichia coli SE11 lipoyl synthase YP_002291970.1 744142 R 409438 CDS YP_002291971.1 209917887 6999067 complement(745316..746269) 1 NC_011415.1 putative DNA-binding transcriptional regulator 746269 6999067 ECSE_0696 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002291971.1 745316 R 409438 CDS YP_002291972.1 209917888 6999068 complement(746528..747169) 1 NC_011415.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 747169 lipB 6999068 lipB Escherichia coli SE11 lipoate-protein ligase B YP_002291972.1 746528 R 409438 CDS YP_002291973.1 209917889 6999069 complement(747270..747533) 1 NC_011415.1 hypothetical protein 747533 6999069 ECSE_0698 Escherichia coli SE11 hypothetical protein YP_002291973.1 747270 R 409438 CDS YP_002291974.1 209917890 6999070 complement(747644..748855) 1 NC_011415.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; D-alanyl-D-alanine carboxypeptidase fraction A 748855 6999070 ECSE_0699 Escherichia coli SE11 D-alanyl-D-alanine carboxypeptidase fraction A YP_002291974.1 747644 R 409438 CDS YP_002291975.1 209917891 6999071 748875..749018 1 NC_011415.1 hypothetical protein 749018 6999071 ECSE_0700 Escherichia coli SE11 hypothetical protein YP_002291975.1 748875 D 409438 CDS YP_002291976.1 209917892 6999072 complement(748995..750083) 1 NC_011415.1 rare lipoprotein A 750083 6999072 ECSE_0701 Escherichia coli SE11 rare lipoprotein A YP_002291976.1 748995 R 409438 CDS YP_002291977.1 209917893 6999073 complement(750094..751206) 1 NC_011415.1 cell wall shape-determining protein 751206 6999073 ECSE_0702 Escherichia coli SE11 cell wall shape-determining protein YP_002291977.1 750094 R 409438 CDS YP_002291978.1 209917894 6999074 complement(751209..753110) 1 NC_011415.1 penicillin-binding protein 2 753110 6999074 ECSE_0703 Escherichia coli SE11 penicillin-binding protein 2 YP_002291978.1 751209 R 409438 CDS YP_002291979.1 209917895 6999075 complement(753141..753608) 1 NC_011415.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 753608 6999075 ECSE_0704 Escherichia coli SE11 rRNA large subunit methyltransferase YP_002291979.1 753141 R 409438 CDS YP_002291980.1 209917896 6999076 complement(753612..753929) 1 NC_011415.1 hypothetical protein 753929 6999076 ECSE_0705 Escherichia coli SE11 hypothetical protein YP_002291980.1 753612 R 409438 CDS YP_002291981.1 209917897 6999077 754005..754175 1 NC_011415.1 hypothetical protein 754175 6999077 ECSE_0706 Escherichia coli SE11 hypothetical protein YP_002291981.1 754005 D 409438 CDS YP_002291982.1 209917898 6999078 complement(754189..754800) 1 NC_011415.1 alpha-ribazole-5'-phosphate phosphatase 754800 6999078 ECSE_0707 Escherichia coli SE11 alpha-ribazole-5'-phosphate phosphatase YP_002291982.1 754189 R 409438 CDS YP_002291983.1 209917899 6999079 complement(754824..755465) 1 NC_011415.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 755465 nadD 6999079 nadD Escherichia coli SE11 nicotinic acid mononucleotide adenylyltransferase YP_002291983.1 754824 R 409438 CDS YP_002291984.1 209917900 6999080 complement(755467..756498) 1 NC_011415.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 756498 holA 6999080 holA Escherichia coli SE11 DNA polymerase III subunit delta YP_002291984.1 755467 R 409438 CDS YP_002291985.1 209917901 6999081 complement(756498..757079) 1 NC_011415.1 rare lipoprotein B; involved in the assembly of LPS in the outer membrane; LPS-assembly lipoprotein RlpB 757079 6999081 ECSE_0710 Escherichia coli SE11 LPS-assembly lipoprotein RlpB YP_002291985.1 756498 R 409438 CDS YP_002291986.1 209917902 6999082 complement(757094..759676) 1 NC_011415.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 759676 leuS 6999082 leuS Escherichia coli SE11 leucyl-tRNA synthetase YP_002291986.1 757094 R 409438 CDS YP_002291987.1 209917903 6999083 759911..760393 1 NC_011415.1 hypothetical protein 760393 6999083 ECSE_0712 Escherichia coli SE11 hypothetical protein YP_002291987.1 759911 D 409438 CDS YP_002291988.1 209917904 6999084 complement(760463..761446) 1 NC_011415.1 hypothetical protein 761446 6999084 ECSE_0713 Escherichia coli SE11 hypothetical protein YP_002291988.1 760463 R 409438 CDS YP_002291989.1 209917905 6999085 761604..762311 1 NC_011415.1 hypothetical protein 762311 6999085 ECSE_0714 Escherichia coli SE11 hypothetical protein YP_002291989.1 761604 D 409438 CDS YP_002291990.1 209917906 6999086 762308..763735 1 NC_011415.1 hypothetical protein 763735 6999086 ECSE_0715 Escherichia coli SE11 hypothetical protein YP_002291990.1 762308 D 409438 CDS YP_002291991.1 209917907 6999087 complement(763745..764299) 1 NC_011415.1 hypothetical protein 764299 6999087 ECSE_0716 Escherichia coli SE11 hypothetical protein YP_002291991.1 763745 R 409438 CDS YP_002291992.1 209917908 6999088 764400..765107 1 NC_011415.1 putative tRNA ligase 765107 6999088 ECSE_0717 Escherichia coli SE11 putative tRNA ligase YP_002291992.1 764400 D 409438 CDS YP_002291993.1 209917909 6999089 765104..766555 1 NC_011415.1 hypothetical protein 766555 6999089 ECSE_0718 Escherichia coli SE11 hypothetical protein YP_002291993.1 765104 D 409438 CDS YP_002291994.1 209917910 6999090 complement(766615..767019) 1 NC_011415.1 putative truncated dnaK protein 767019 6999090 ECSE_0719 Escherichia coli SE11 putative truncated dnaK protein YP_002291994.1 766615 R 409438 CDS YP_002291995.1 209917911 6999091 complement(766995..768284) 1 NC_011415.1 putative truncated dnaK protein 768284 6999091 ECSE_0720 Escherichia coli SE11 putative truncated dnaK protein YP_002291995.1 766995 R 409438 CDS YP_002291996.1 209917912 6999092 complement(768368..769303) 1 NC_011415.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 769303 rihA 6999092 rihA Escherichia coli SE11 ribonucleoside hydrolase 1 YP_002291996.1 768368 R 409438 CDS YP_002291997.1 209917913 6999093 complement(769421..770146) 1 NC_011415.1 glutamate/aspartate ABC transporter ATP-binding protein 770146 6999093 ECSE_0722 Escherichia coli SE11 glutamate/aspartate ABC transporter ATP-binding protein YP_002291997.1 769421 R 409438 CDS YP_002291998.1 209917914 6999094 complement(770146..770820) 1 NC_011415.1 glutamate/aspartate ABC transporter permease 770820 6999094 ECSE_0723 Escherichia coli SE11 glutamate/aspartate ABC transporter permease YP_002291998.1 770146 R 409438 CDS YP_002291999.1 209917915 6999095 complement(770820..771560) 1 NC_011415.1 glutamate/aspartate ABC transporter permease 771560 6999095 ECSE_0724 Escherichia coli SE11 glutamate/aspartate ABC transporter permease YP_002291999.1 770820 R 409438 CDS YP_002292000.1 209917916 6999096 complement(771730..772638) 1 NC_011415.1 glutamate and aspartate transporter subunit 772638 6999096 ECSE_0725 Escherichia coli SE11 glutamate and aspartate transporter subunit YP_002292000.1 771730 R 409438 CDS YP_002292001.1 209917917 6999097 772773..772895 1 NC_011415.1 hypothetical protein 772895 6999097 ECSE_0726 Escherichia coli SE11 hypothetical protein YP_002292001.1 772773 D 409438 CDS YP_002292002.1 209917918 6999098 773093..774970 1 NC_011415.1 hypothetical protein 774970 6999098 ECSE_0727 Escherichia coli SE11 hypothetical protein YP_002292002.1 773093 D 409438 CDS YP_002292003.1 209917919 6999099 complement(775048..776586) 1 NC_011415.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 776586 lnt 6999099 lnt Escherichia coli SE11 apolipoprotein N-acyltransferase YP_002292003.1 775048 R 409438 CDS YP_002292004.1 209917920 6999100 complement(776611..777489) 1 NC_011415.1 hypothetical protein 777489 6999100 ECSE_0729 Escherichia coli SE11 hypothetical protein YP_002292004.1 776611 R 409438 CDS YP_002292005.1 209917921 6999101 complement(777579..778046) 1 NC_011415.1 putative metalloprotease 778046 6999101 ECSE_0730 Escherichia coli SE11 putative metalloprotease YP_002292005.1 777579 R 409438 CDS YP_002292006.1 209917922 6999102 complement(778043..779083) 1 NC_011415.1 hypothetical protein 779083 6999102 ECSE_0731 Escherichia coli SE11 hypothetical protein YP_002292006.1 778043 R 409438 CDS YP_002292007.1 209917923 6999103 complement(779236..780660) 1 NC_011415.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 780660 6999103 ECSE_0732 Escherichia coli SE11 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002292007.1 779236 R 409438 CDS YP_002292008.1 209917924 6999104 780806..781981 1 NC_011415.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 781981 ubiF 6999104 ubiF Escherichia coli SE11 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002292008.1 780806 D 409438 CDS YP_002292009.1 209917925 7003151 complement(783219..784883) 1 NC_011415.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 784883 asnB 7003151 asnB Escherichia coli SE11 asparagine synthetase B YP_002292009.1 783219 R 409438 CDS YP_002292010.1 209917926 6999106 complement(785140..785892) 1 NC_011415.1 UMP phosphatase 785892 6999106 ECSE_0735 Escherichia coli SE11 UMP phosphatase YP_002292010.1 785140 R 409438 CDS YP_002292011.1 209917927 6999107 complement(785940..787160) 1 NC_011415.1 N-acetylglucosamine repressor 787160 6999107 ECSE_0736 Escherichia coli SE11 N-acetylglucosamine repressor YP_002292011.1 785940 R 409438 CDS YP_002292012.1 209917928 6999108 complement(787169..788317) 1 NC_011415.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 788317 nagA 6999108 nagA Escherichia coli SE11 N-acetylglucosamine-6-phosphate deacetylase YP_002292012.1 787169 R 409438 CDS YP_002292013.1 209917929 6999109 complement(788377..789177) 1 NC_011415.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 789177 nagB 6999109 nagB Escherichia coli SE11 glucosamine-6-phosphate deaminase YP_002292013.1 788377 R 409438 CDS YP_002292014.1 209917930 6999110 complement(789226..789360) 1 NC_011415.1 hypothetical protein 789360 6999110 ECSE_0739 Escherichia coli SE11 hypothetical protein YP_002292014.1 789226 R 409438 CDS YP_002292015.1 209917931 6999111 789510..791456 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system N-acetyl glucosamine specific transporter subunits IIABC 791456 6999111 ECSE_0740 Escherichia coli SE11 PTS system N-acetyl glucosamine specific transporter subunits IIABC YP_002292015.1 789510 D 409438 CDS YP_002292016.1 209917932 6999112 791659..793323 1 NC_011415.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 793323 6999112 ECSE_0741 Escherichia coli SE11 glutaminyl-tRNA synthetase YP_002292016.1 791659 D 409438 CDS YP_002292017.1 209917933 6999113 complement(793326..793511) 1 NC_011415.1 hypothetical protein 793511 6999113 ECSE_0742 Escherichia coli SE11 hypothetical protein YP_002292017.1 793326 R 409438 CDS YP_002292018.1 209917934 6999114 793769..795175 1 NC_011415.1 hypothetical protein 795175 6999114 ECSE_0743 Escherichia coli SE11 hypothetical protein YP_002292018.1 793769 D 409438 CDS YP_002292019.1 209917935 6999115 795225..795551 1 NC_011415.1 hypothetical protein 795551 6999115 ECSE_0744 Escherichia coli SE11 hypothetical protein YP_002292019.1 795225 D 409438 CDS YP_002292020.1 209917936 6999116 complement(795635..796081) 1 NC_011415.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer; ferric uptake regulator 796081 fur 6999116 fur Escherichia coli SE11 ferric uptake regulator YP_002292020.1 795635 R 409438 CDS YP_002292021.1 209917937 6999117 complement(796370..796900) 1 NC_011415.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 796900 6999117 ECSE_0746 Escherichia coli SE11 flavodoxin FldA YP_002292021.1 796370 R 409438 CDS YP_002292022.1 209917938 6999118 complement(797040..797333) 1 NC_011415.1 LexA regulated protein 797333 6999118 ECSE_0747 Escherichia coli SE11 LexA regulated protein YP_002292022.1 797040 R 409438 CDS YP_002292023.1 209917939 6999119 complement(797473..798237) 1 NC_011415.1 hypothetical protein 798237 6999119 ECSE_0748 Escherichia coli SE11 hypothetical protein YP_002292023.1 797473 R 409438 CDS YP_002292024.1 209917940 6999120 798422..798967 1 NC_011415.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 798967 6999120 ECSE_0749 Escherichia coli SE11 replication initiation regulator SeqA YP_002292024.1 798422 D 409438 CDS YP_002292025.1 209917941 6999121 798993..800633 1 NC_011415.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 800633 6999121 ECSE_0750 Escherichia coli SE11 phosphoglucomutase YP_002292025.1 798993 D 409438 CDS YP_002292026.1 209917942 6999122 complement(800689..802008) 1 NC_011415.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 802008 potE 6999122 potE Escherichia coli SE11 putrescine transporter YP_002292026.1 800689 R 409438 CDS YP_002292027.1 209917943 6999123 complement(802005..804203) 1 NC_011415.1 ornithine decarboxylase 804203 6999123 ECSE_0752 Escherichia coli SE11 ornithine decarboxylase YP_002292027.1 802005 R 409438 CDS YP_002292028.1 209917944 6999124 804737..804871 1 NC_011415.1 hypothetical protein 804871 6999124 ECSE_0753 Escherichia coli SE11 hypothetical protein YP_002292028.1 804737 D 409438 CDS YP_002292029.1 209917945 6999125 complement(804893..805570) 1 NC_011415.1 response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport; DNA-binding transcriptional activator KdpE 805570 6999125 ECSE_0754 Escherichia coli SE11 DNA-binding transcriptional activator KdpE YP_002292029.1 804893 R 409438 CDS YP_002292030.1 209917946 6999126 complement(805567..808251) 1 NC_011415.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein; sensor protein KdpD 808251 6999126 ECSE_0755 Escherichia coli SE11 sensor protein KdpD YP_002292030.1 805567 R 409438 CDS YP_002292031.1 209917947 6999127 complement(808244..808816) 1 NC_011415.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C 808816 6999127 ECSE_0756 Escherichia coli SE11 potassium-transporting ATPase subunit C YP_002292031.1 808244 R 409438 CDS YP_002292032.1 209917948 6999128 complement(808825..810873) 1 NC_011415.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B 810873 6999128 ECSE_0757 Escherichia coli SE11 potassium-transporting ATPase subunit B YP_002292032.1 808825 R 409438 CDS YP_002292033.1 209917949 6999129 complement(810896..812569) 1 NC_011415.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A 812569 6999129 ECSE_0758 Escherichia coli SE11 potassium-transporting ATPase subunit A YP_002292033.1 810896 R 409438 CDS YP_002292034.1 209917950 6999130 812971..813177 1 NC_011415.1 hypothetical protein 813177 6999130 ECSE_0759 Escherichia coli SE11 hypothetical protein YP_002292034.1 812971 D 409438 CDS YP_002292035.1 209917951 6999131 813178..813333 1 NC_011415.1 hypothetical protein 813333 6999131 ECSE_0760 Escherichia coli SE11 hypothetical protein YP_002292035.1 813178 D 409438 CDS YP_002292036.1 209917952 6999132 813420..817613 1 NC_011415.1 Rhs core protein 817613 6999132 ECSE_0761 Escherichia coli SE11 Rhs core protein YP_002292036.1 813420 D 409438 CDS YP_002292037.1 209917953 6999133 818057..819490 1 NC_011415.1 putative truncated Rhs core protein 819490 6999133 ECSE_0762 Escherichia coli SE11 putative truncated Rhs core protein YP_002292037.1 818057 D 409438 CDS YP_002292038.1 209917954 6999134 819487..820056 1 NC_011415.1 hypothetical protein 820056 6999134 ECSE_0763 Escherichia coli SE11 hypothetical protein YP_002292038.1 819487 D 409438 CDS YP_002292039.1 209917955 6999135 820282..820536 1 NC_011415.1 hypothetical protein 820536 6999135 ECSE_0764 Escherichia coli SE11 hypothetical protein YP_002292039.1 820282 D 409438 CDS YP_002292040.1 209917956 6999136 820737..821423 1 NC_011415.1 hypothetical protein 821423 6999136 ECSE_0765 Escherichia coli SE11 hypothetical protein YP_002292040.1 820737 D 409438 CDS YP_002292041.1 209917957 6999137 821571..822080 1 NC_011415.1 hypothetical protein 822080 6999137 ECSE_0766 Escherichia coli SE11 hypothetical protein YP_002292041.1 821571 D 409438 CDS YP_002292042.1 209917958 6999138 822077..823495 1 NC_011415.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent; deoxyribodipyrimidine photolyase 823495 6999138 ECSE_0767 Escherichia coli SE11 deoxyribodipyrimidine photolyase YP_002292042.1 822077 D 409438 CDS YP_002292043.1 209917959 6999139 complement(823537..825018) 1 NC_011415.1 putative transport protein 825018 6999139 ECSE_0768 Escherichia coli SE11 putative transport protein YP_002292043.1 823537 R 409438 CDS YP_002292044.1 209917960 6999140 825289..826032 1 NC_011415.1 putative hydrolase-oxidase 826032 6999140 ECSE_0769 Escherichia coli SE11 putative hydrolase-oxidase YP_002292044.1 825289 D 409438 CDS YP_002292045.1 209917961 6999141 826055..826711 1 NC_011415.1 putative carboxylase 826711 6999141 ECSE_0770 Escherichia coli SE11 putative carboxylase YP_002292045.1 826055 D 409438 CDS YP_002292046.1 209917962 6999142 826705..827637 1 NC_011415.1 putative carboxylase 827637 6999142 ECSE_0771 Escherichia coli SE11 putative carboxylase YP_002292046.1 826705 D 409438 CDS YP_002292047.1 209917963 6999143 827627..828361 1 NC_011415.1 LamB/YcsF family protein 828361 6999143 ECSE_0772 Escherichia coli SE11 LamB/YcsF family protein YP_002292047.1 827627 D 409438 CDS YP_002292048.1 209917964 6999144 828397..829188 1 NC_011415.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity; endonuclease VIII 829188 6999144 ECSE_0773 Escherichia coli SE11 endonuclease VIII YP_002292048.1 828397 D 409438 CDS YP_002292049.1 209917965 6999145 complement(829185..830276) 1 NC_011415.1 putative transport protein 830276 6999145 ECSE_0774 Escherichia coli SE11 putative transport protein YP_002292049.1 829185 R 409438 CDS YP_002292050.1 209917966 6999146 complement(830383..831444) 1 NC_011415.1 putative fimbrial protein 831444 6999146 ECSE_0775 Escherichia coli SE11 putative fimbrial protein YP_002292050.1 830383 R 409438 CDS YP_002292051.1 209917967 6999147 complement(831441..832172) 1 NC_011415.1 putative fimbrial chaperone 832172 6999147 ECSE_0776 Escherichia coli SE11 putative fimbrial chaperone YP_002292051.1 831441 R 409438 CDS YP_002292052.1 209917968 6999148 complement(832187..834646) 1 NC_011415.1 putative fimbrial usher protein 834646 6999148 ECSE_0777 Escherichia coli SE11 putative fimbrial usher protein YP_002292052.1 832187 R 409438 CDS YP_002292053.1 209917969 6999149 complement(834697..835263) 1 NC_011415.1 putative fimbrial protein 835263 6999149 ECSE_0778 Escherichia coli SE11 putative fimbrial protein YP_002292053.1 834697 R 409438 CDS YP_002292054.1 209917970 6999150 complement(835654..836937) 1 NC_011415.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 836937 gltA 6999150 gltA Escherichia coli SE11 type II citrate synthase YP_002292054.1 835654 R 409438 CDS YP_002292055.1 209917971 6999152 836919..837110 1 NC_011415.1 hypothetical protein 837110 6999152 ECSE_0779 Escherichia coli SE11 hypothetical protein YP_002292055.1 836919 D 409438 CDS YP_002292056.1 209917972 6999151 837645..838034 1 NC_011415.1 succinate dehydrogenase cytochrome b556 large membrane subunit 838034 sdhC 6999151 sdhC Escherichia coli SE11 succinate dehydrogenase cytochrome b556 large membrane subunit YP_002292056.1 837645 D 409438 CDS YP_002292057.1 209917973 6999153 838028..838375 1 NC_011415.1 succinate dehydrogenase cytochrome b556 small membrane subunit 838375 sdhD 6999153 sdhD Escherichia coli SE11 succinate dehydrogenase cytochrome b556 small membrane subunit YP_002292057.1 838028 D 409438 CDS YP_002292058.1 209917974 6999154 838375..840141 1 NC_011415.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 840141 sdhA 6999154 sdhA Escherichia coli SE11 succinate dehydrogenase flavoprotein subunit YP_002292058.1 838375 D 409438 CDS YP_002292059.1 209917975 6999155 840157..840873 1 NC_011415.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 840873 sdhB 6999155 sdhB Escherichia coli SE11 succinate dehydrogenase iron-sulfur subunit YP_002292059.1 840157 D 409438 CDS YP_002292060.1 209917976 6999156 841074..843875 1 NC_011415.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 843875 sucA 6999156 sucA Escherichia coli SE11 2-oxoglutarate dehydrogenase E1 component YP_002292060.1 841074 D 409438 CDS YP_002292061.1 209917977 6999157 843890..845107 1 NC_011415.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 845107 6999157 ECSE_0786 Escherichia coli SE11 dihydrolipoamide succinyltransferase YP_002292061.1 843890 D 409438 CDS YP_002292062.1 209917978 6999158 845201..846367 1 NC_011415.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 846367 sucC 6999158 sucC Escherichia coli SE11 succinyl-CoA synthetase subunit beta YP_002292062.1 845201 D 409438 CDS YP_002292063.1 209917979 6999159 846367..847236 1 NC_011415.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 847236 6999159 ECSE_0788 Escherichia coli SE11 succinyl-CoA synthetase subunit alpha YP_002292063.1 846367 D 409438 CDS YP_002292064.1 209917980 6999160 complement(847340..848062) 1 NC_011415.1 regulates the succiny-lCoA synthetase operon; DNA-binding transcriptional repressor MngR 848062 6999160 ECSE_0789 Escherichia coli SE11 DNA-binding transcriptional repressor MngR YP_002292064.1 847340 R 409438 CDS YP_002292065.1 209917981 6999161 848171..850147 1 NC_011415.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC 850147 6999161 ECSE_0790 Escherichia coli SE11 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC YP_002292065.1 848171 D 409438 CDS YP_002292066.1 209917982 6999162 850165..852798 1 NC_011415.1 alpha-mannosidase 852798 6999162 ECSE_0791 Escherichia coli SE11 alpha-mannosidase YP_002292066.1 850165 D 409438 CDS YP_002292067.1 209917983 6999163 852823..853050 1 NC_011415.1 hypothetical protein 853050 6999163 ECSE_0792 Escherichia coli SE11 hypothetical protein YP_002292067.1 852823 D 409438 CDS YP_002292068.1 209917984 6999164 853645..855213 1 NC_011415.1 cytochrome d ubiquinol oxidase subunit I 855213 6999164 ECSE_0793 Escherichia coli SE11 cytochrome d ubiquinol oxidase subunit I YP_002292068.1 853645 D 409438 CDS YP_002292069.1 209917985 6999165 855229..856368 1 NC_011415.1 cytochrome d ubiquinol oxidase subunit II 856368 6999165 ECSE_0794 Escherichia coli SE11 cytochrome d ubiquinol oxidase subunit II YP_002292069.1 855229 D 409438 CDS YP_002292070.1 209917986 6999166 856496..856789 1 NC_011415.1 hypothetical protein 856789 6999166 ECSE_0795 Escherichia coli SE11 hypothetical protein YP_002292070.1 856496 D 409438 CDS YP_002292071.1 209917987 6999167 856939..857343 1 NC_011415.1 catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components; acyl-CoA thioester hydrolase YbgC 857343 6999167 ECSE_0796 Escherichia coli SE11 acyl-CoA thioester hydrolase YbgC YP_002292071.1 856939 D 409438 CDS YP_002292072.1 209917988 6999168 857340..858032 1 NC_011415.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 858032 6999168 ECSE_0797 Escherichia coli SE11 colicin uptake protein TolQ YP_002292072.1 857340 D 409438 CDS YP_002292073.1 209917989 6999169 858036..858464 1 NC_011415.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 858464 6999169 ECSE_0798 Escherichia coli SE11 colicin uptake protein TolR YP_002292073.1 858036 D 409438 CDS YP_002292074.1 209917990 6999170 858529..859794 1 NC_011415.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 859794 tolA 6999170 tolA Escherichia coli SE11 cell envelope integrity inner membrane protein TolA YP_002292074.1 858529 D 409438 CDS YP_002292075.1 209917991 6999171 859924..861219 1 NC_011415.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 861219 tolB 6999171 tolB Escherichia coli SE11 translocation protein TolB YP_002292075.1 859924 D 409438 CDS YP_002292076.1 209917992 6999172 861254..861775 1 NC_011415.1 peptidoglycan-associated outer membrane lipoprotein 861775 6999172 ECSE_0801 Escherichia coli SE11 peptidoglycan-associated outer membrane lipoprotein YP_002292076.1 861254 D 409438 CDS YP_002292077.1 209917993 6999173 861785..862576 1 NC_011415.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity; tol-pal system protein YbgF 862576 6999173 ECSE_0802 Escherichia coli SE11 tol-pal system protein YbgF YP_002292077.1 861785 D 409438 CDS YP_002292078.1 209917994 7003084 864145..865188 1 NC_011415.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 865188 7003084 ECSE_0803 Escherichia coli SE11 quinolinate synthetase YP_002292078.1 864145 D 409438 CDS YP_002292079.1 209917995 6999175 865226..865945 1 NC_011415.1 nucleoside/purine/pyrimidine transport protein 865945 6999175 ECSE_0804 Escherichia coli SE11 nucleoside/purine/pyrimidine transport protein YP_002292079.1 865226 D 409438 CDS YP_002292080.1 209917996 6999176 complement(865942..866883) 1 NC_011415.1 involved in zinc efflux across the cytoplasmic membrane; zinc transporter ZitB 866883 6999176 ECSE_0805 Escherichia coli SE11 zinc transporter ZitB YP_002292080.1 865942 R 409438 CDS YP_002292081.1 209917997 6999177 complement(866997..867377) 1 NC_011415.1 hypothetical protein 867377 6999177 ECSE_0806 Escherichia coli SE11 hypothetical protein YP_002292081.1 866997 R 409438 CDS YP_002292082.1 209917998 6999178 867693..868745 1 NC_011415.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 868745 6999178 ECSE_0807 Escherichia coli SE11 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002292082.1 867693 D 409438 CDS YP_002292083.1 209917999 6999179 complement(868903..869655) 1 NC_011415.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 869655 gpmA 6999179 gpmA Escherichia coli SE11 phosphoglyceromutase YP_002292083.1 868903 R 409438 CDS YP_002292084.1 209918000 6999180 complement(869860..870900) 1 NC_011415.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 870900 galM 6999180 galM Escherichia coli SE11 aldose 1-epimerase YP_002292084.1 869860 R 409438 CDS YP_002292085.1 209918001 6999181 complement(870894..872042) 1 NC_011415.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 872042 6999181 ECSE_0810 Escherichia coli SE11 galactokinase YP_002292085.1 870894 R 409438 CDS YP_002292086.1 209918002 6999182 complement(872046..873092) 1 NC_011415.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 873092 6999182 ECSE_0811 Escherichia coli SE11 galactose-1-phosphate uridylyltransferase YP_002292086.1 872046 R 409438 CDS YP_002292087.1 209918003 6999183 complement(873102..874118) 1 NC_011415.1 UDP-galactose-4-epimerase 874118 6999183 ECSE_0812 Escherichia coli SE11 UDP-galactose-4-epimerase YP_002292087.1 873102 R 409438 CDS YP_002292088.1 209918004 6999184 complement(874379..875851) 1 NC_011415.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum; putative molybdenum transport ATP-binding protein ModF 875851 6999184 ECSE_0813 Escherichia coli SE11 putative molybdenum transport ATP-binding protein ModF YP_002292088.1 874379 R 409438 CDS YP_002292089.1 209918005 6999185 complement(875919..876707) 1 NC_011415.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons; DNA-binding transcriptional regulator ModE 876707 6999185 ECSE_0814 Escherichia coli SE11 DNA-binding transcriptional regulator ModE YP_002292089.1 875919 R 409438 CDS YP_002292090.1 209918006 6999186 876830..876985 1 NC_011415.1 hypothetical protein 876985 6999186 ECSE_0815 Escherichia coli SE11 hypothetical protein YP_002292090.1 876830 D 409438 CDS YP_002292091.1 209918007 6999187 877151..877924 1 NC_011415.1 with ModCB is involved in the high-affinity transport of molybdate; molybdate transporter periplasmic protein 877924 modA 6999187 modA Escherichia coli SE11 molybdate transporter periplasmic protein YP_002292091.1 877151 D 409438 CDS YP_002292092.1 209918008 6999188 877924..878613 1 NC_011415.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 878613 modB 6999188 modB Escherichia coli SE11 molybdate ABC transporter permease YP_002292092.1 877924 D 409438 CDS YP_002292093.1 209918009 6999189 878616..879674 1 NC_011415.1 Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein 879674 modC 6999189 modC Escherichia coli SE11 molybdate transporter ATP-binding protein YP_002292093.1 878616 D 409438 CDS YP_002292094.1 209918010 6999190 complement(879675..880493) 1 NC_011415.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily; phosphotransferase 880493 6999190 ECSE_0819 Escherichia coli SE11 phosphotransferase YP_002292094.1 879675 R 409438 CDS YP_002292095.1 209918011 6999191 880648..881643 1 NC_011415.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate; 6-phosphogluconolactonase 881643 6999191 ECSE_0820 Escherichia coli SE11 6-phosphogluconolactonase YP_002292095.1 880648 D 409438 CDS YP_002292096.1 209918012 6999192 complement(881684..882637) 1 NC_011415.1 putative transcriptional regulator 882637 6999192 ECSE_0821 Escherichia coli SE11 putative transcriptional regulator YP_002292096.1 881684 R 409438 CDS YP_002292097.1 209918013 6999193 882821..883873 1 NC_011415.1 hypothetical protein 883873 6999193 ECSE_0822 Escherichia coli SE11 hypothetical protein YP_002292097.1 882821 D 409438 CDS YP_002292098.1 209918014 6999194 883949..885382 1 NC_011415.1 hypothetical protein 885382 6999194 ECSE_0823 Escherichia coli SE11 hypothetical protein YP_002292098.1 883949 D 409438 CDS YP_002292099.1 209918015 6999195 885541..887826 1 NC_011415.1 hypothetical protein 887826 6999195 ECSE_0824 Escherichia coli SE11 hypothetical protein YP_002292099.1 885541 D 409438 CDS YP_002292100.1 209918016 6999196 complement(888060..889343) 1 NC_011415.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family; putative pectinesterase 889343 6999196 ECSE_0825 Escherichia coli SE11 putative pectinesterase YP_002292100.1 888060 R 409438 CDS YP_002292101.1 209918017 6999197 complement(889495..889971) 1 NC_011415.1 YbhB; similar to rat and human kinase inhibitory proteins; putative kinase inhibitor protein 889971 6999197 ECSE_0826 Escherichia coli SE11 putative kinase inhibitor protein YP_002292101.1 889495 R 409438 CDS YP_002292102.1 209918018 6999198 complement(890030..891319) 1 NC_011415.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 891319 6999198 ECSE_0827 Escherichia coli SE11 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_002292102.1 890030 R 409438 CDS YP_002292103.1 209918019 6999199 891406..892446 1 NC_011415.1 biotin synthase BioB 892446 6999199 ECSE_0828 Escherichia coli SE11 biotin synthase BioB YP_002292103.1 891406 D 409438 CDS YP_002292104.1 209918020 6999200 892443..893597 1 NC_011415.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 893597 6999200 ECSE_0829 Escherichia coli SE11 8-amino-7-oxononanoate synthase YP_002292104.1 892443 D 409438 CDS YP_002292105.1 209918021 6999201 893584..894339 1 NC_011415.1 putative methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth; biotin biosynthesis protein BioC 894339 6999201 ECSE_0830 Escherichia coli SE11 biotin biosynthesis protein BioC YP_002292105.1 893584 D 409438 CDS YP_002292106.1 209918022 6999202 894332..895009 1 NC_011415.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 895009 bioD 6999202 bioD Escherichia coli SE11 dithiobiotin synthetase YP_002292106.1 894332 D 409438 CDS YP_002292107.1 209918023 6999203 complement(895176..895313) 1 NC_011415.1 hypothetical protein 895313 6999203 ECSE_0832 Escherichia coli SE11 hypothetical protein YP_002292107.1 895176 R 409438 CDS YP_002292108.1 209918024 6999204 895588..897609 1 NC_011415.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 897609 6999204 ECSE_0833 Escherichia coli SE11 excinuclease ABC subunit B YP_002292108.1 895588 D 409438 CDS YP_002292109.1 209918025 6999205 complement(897801..898751) 1 NC_011415.1 hypothetical protein 898751 6999205 ECSE_0834 Escherichia coli SE11 hypothetical protein YP_002292109.1 897801 R 409438 CDS YP_002292110.1 209918026 6999206 899106..900095 1 NC_011415.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 900095 moaA 6999206 moaA Escherichia coli SE11 molybdenum cofactor biosynthesis protein A YP_002292110.1 899106 D 409438 CDS YP_002292111.1 209918027 6999207 900117..900629 1 NC_011415.1 molybdopterin biosynthesis protein B 900629 6999207 ECSE_0836 Escherichia coli SE11 molybdopterin biosynthesis protein B YP_002292111.1 900117 D 409438 CDS YP_002292112.1 209918028 6999208 900632..901117 1 NC_011415.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 901117 moaC 6999208 moaC Escherichia coli SE11 molybdenum cofactor biosynthesis protein MoaC YP_002292112.1 900632 D 409438 CDS YP_002292113.1 209918029 6999209 901110..901355 1 NC_011415.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 901355 moaD 6999209 moaD Escherichia coli SE11 molybdopterin synthase small subunit YP_002292113.1 901110 D 409438 CDS YP_002292114.1 209918030 6999210 901357..901809 1 NC_011415.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin guanine dinucleotide biosynthesis protein MoaE 901809 moaE 6999210 moaE Escherichia coli SE11 molybdopterin guanine dinucleotide biosynthesis protein MoaE YP_002292114.1 901357 D 409438 CDS YP_002292115.1 209918031 6999211 901946..902650 1 NC_011415.1 hypothetical protein 902650 6999211 ECSE_0840 Escherichia coli SE11 hypothetical protein YP_002292115.1 901946 D 409438 CDS YP_002292116.1 209918032 6999212 902795..903499 1 NC_011415.1 hypothetical protein 903499 6999212 ECSE_0841 Escherichia coli SE11 hypothetical protein YP_002292116.1 902795 D 409438 CDS YP_002292117.1 209918033 6999213 903569..904282 1 NC_011415.1 hypothetical protein 904282 6999213 ECSE_0842 Escherichia coli SE11 hypothetical protein YP_002292117.1 903569 D 409438 CDS YP_002292118.1 209918034 6999214 complement(904318..905274) 1 NC_011415.1 hypothetical protein 905274 6999214 ECSE_0843 Escherichia coli SE11 hypothetical protein YP_002292118.1 904318 R 409438 CDS YP_002292119.1 209918035 6999215 complement(905274..906515) 1 NC_011415.1 cardiolipin synthase 2 906515 6999215 ECSE_0844 Escherichia coli SE11 cardiolipin synthase 2 YP_002292119.1 905274 R 409438 CDS YP_002292120.1 209918036 6999216 complement(906512..907273) 1 NC_011415.1 endonuclease/exonuclease/phosphatase 907273 6999216 ECSE_0845 Escherichia coli SE11 endonuclease/exonuclease/phosphatase YP_002292120.1 906512 R 409438 CDS YP_002292121.1 209918037 6999217 907406..907816 1 NC_011415.1 hypothetical protein 907816 6999217 ECSE_0846 Escherichia coli SE11 hypothetical protein YP_002292121.1 907406 D 409438 CDS YP_002292122.1 209918038 6999218 complement(907778..908884) 1 NC_011415.1 hypothetical protein 908884 6999218 ECSE_0847 Escherichia coli SE11 hypothetical protein YP_002292122.1 907778 R 409438 CDS YP_002292123.1 209918039 6999219 complement(908895..910028) 1 NC_011415.1 hypothetical protein 910028 6999219 ECSE_0848 Escherichia coli SE11 hypothetical protein YP_002292123.1 908895 R 409438 CDS YP_002292124.1 209918040 6999220 complement(910021..911757) 1 NC_011415.1 putative ABC transporter ATP-binding protein 911757 6999220 ECSE_0849 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002292124.1 910021 R 409438 CDS YP_002292125.1 209918041 6999221 complement(911750..912748) 1 NC_011415.1 hypothetical protein 912748 6999221 ECSE_0850 Escherichia coli SE11 hypothetical protein YP_002292125.1 911750 R 409438 CDS YP_002292126.1 209918042 6999222 complement(912748..913431) 1 NC_011415.1 putative DNA-binding transcriptional regulator 913431 6999222 ECSE_0851 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002292126.1 912748 R 409438 CDS YP_002292127.1 209918043 6999223 913648..915012 1 NC_011415.1 this helicase is not essential cell growth; ATP-dependent RNA helicase RhlE 915012 6999223 ECSE_0852 Escherichia coli SE11 ATP-dependent RNA helicase RhlE YP_002292127.1 913648 D 409438 CDS YP_002292128.1 209918044 6999224 complement(915017..915178) 1 NC_011415.1 hypothetical protein 915178 6999224 ECSE_0853 Escherichia coli SE11 hypothetical protein YP_002292128.1 915017 R 409438 CDS YP_002292129.1 209918045 6999225 complement(915244..915726) 1 NC_011415.1 hypothetical protein 915726 6999225 ECSE_0854 Escherichia coli SE11 hypothetical protein YP_002292129.1 915244 R 409438 CDS YP_002292130.1 209918046 6999226 915846..917996 1 NC_011415.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 917996 dinG 6999226 dinG Escherichia coli SE11 ATP-dependent DNA helicase DinG YP_002292130.1 915846 D 409438 CDS YP_002292131.1 209918047 6999227 918024..918986 1 NC_011415.1 glycosyl transferase family protein 918986 6999227 ECSE_0856 Escherichia coli SE11 glycosyl transferase family protein YP_002292131.1 918024 D 409438 CDS YP_002292132.1 209918048 6999228 919127..920212 1 NC_011415.1 hypothetical protein 920212 6999228 ECSE_0857 Escherichia coli SE11 hypothetical protein YP_002292132.1 919127 D 409438 CDS YP_002292133.1 209918049 6999229 complement(920441..920701) 1 NC_011415.1 hypothetical protein 920701 6999229 ECSE_0858 Escherichia coli SE11 hypothetical protein YP_002292133.1 920441 R 409438 CDS YP_002292134.1 209918050 6999230 complement(920966..921232) 1 NC_011415.1 hypothetical protein 921232 6999230 ECSE_0859 Escherichia coli SE11 hypothetical protein YP_002292134.1 920966 R 409438 CDS YP_002292135.1 209918051 6999231 complement(921306..922019) 1 NC_011415.1 putative hydroxylase 922019 6999231 ECSE_0860 Escherichia coli SE11 putative hydroxylase YP_002292135.1 921306 R 409438 CDS YP_002292136.1 209918052 6999232 complement(922025..924307) 1 NC_011415.1 Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein; catecholate siderophore receptor Fiu 924307 6999232 ECSE_0861 Escherichia coli SE11 catecholate siderophore receptor Fiu YP_002292136.1 922025 R 409438 CDS YP_002292137.1 209918053 6999233 complement(924572..924976) 1 NC_011415.1 hypothetical protein 924976 6999233 ECSE_0862 Escherichia coli SE11 hypothetical protein YP_002292137.1 924572 R 409438 CDS YP_002292138.1 209918054 6999234 925027..926034 1 NC_011415.1 putative SAM-dependent methyltransferase 926034 6999234 ECSE_0863 Escherichia coli SE11 putative SAM-dependent methyltransferase YP_002292138.1 925027 D 409438 CDS YP_002292139.1 209918055 6999235 complement(926031..928244) 1 NC_011415.1 hypothetical protein 928244 6999235 ECSE_0864 Escherichia coli SE11 hypothetical protein YP_002292139.1 926031 R 409438 CDS YP_002292140.1 209918056 6999236 complement(928361..929083) 1 NC_011415.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 929083 glnQ 6999236 glnQ Escherichia coli SE11 glutamine ABC transporter ATP-binding protein YP_002292140.1 928361 R 409438 CDS YP_002292141.1 209918057 6999237 complement(929080..929739) 1 NC_011415.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 929739 glnP 6999237 glnP Escherichia coli SE11 glutamine ABC transporter permease YP_002292141.1 929080 R 409438 CDS YP_002292142.1 209918058 6999238 complement(929878..930624) 1 NC_011415.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 930624 glnH 6999238 glnH Escherichia coli SE11 glutamine ABC transporter periplasmic protein YP_002292142.1 929878 R 409438 CDS YP_002292143.1 209918059 6999239 complement(931028..931531) 1 NC_011415.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage; DNA starvation/stationary phase protection protein Dps 931531 6999239 ECSE_0868 Escherichia coli SE11 DNA starvation/stationary phase protection protein Dps YP_002292143.1 931028 R 409438 CDS YP_002292144.1 209918060 6999240 complement(931830..932717) 1 NC_011415.1 threonine and homoserine efflux system 932717 6999240 ECSE_0869 Escherichia coli SE11 threonine and homoserine efflux system YP_002292144.1 931830 R 409438 CDS YP_002292145.1 209918061 6999241 933070..933585 1 NC_011415.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains; outer membrane protein X 933585 ompX 6999241 ompX Escherichia coli SE11 outer membrane protein X YP_002292145.1 933070 D 409438 CDS YP_002292146.1 209918062 6999242 complement(933634..934176) 1 NC_011415.1 hypothetical protein 934176 6999242 ECSE_0871 Escherichia coli SE11 hypothetical protein YP_002292146.1 933634 R 409438 CDS YP_002292147.1 209918063 6999243 complement(934143..935219) 1 NC_011415.1 hypothetical protein 935219 6999243 ECSE_0872 Escherichia coli SE11 hypothetical protein YP_002292147.1 934143 R 409438 CDS YP_002292148.1 209918064 6999244 complement(935491..935619) 1 NC_011415.1 hypothetical protein 935619 6999244 ECSE_0873 Escherichia coli SE11 hypothetical protein YP_002292148.1 935491 R 409438 CDS YP_002292149.1 209918065 6999245 935805..936272 1 NC_011415.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 936272 6999245 ECSE_0874 Escherichia coli SE11 manganese transport regulator MntR YP_002292149.1 935805 D 409438 CDS YP_002292150.1 209918066 6999246 936269..937387 1 NC_011415.1 putative transcriptional regulator 937387 6999246 ECSE_0875 Escherichia coli SE11 putative transcriptional regulator YP_002292150.1 936269 D 409438 CDS YP_002292151.1 209918067 6999247 complement(937446..938366) 1 NC_011415.1 hypothetical protein 938366 6999247 ECSE_0876 Escherichia coli SE11 hypothetical protein YP_002292151.1 937446 R 409438 CDS YP_002292152.1 209918068 6999248 938585..940177 1 NC_011415.1 ABC transporter ATP-binding protein 940177 6999248 ECSE_0877 Escherichia coli SE11 ABC transporter ATP-binding protein YP_002292152.1 938585 D 409438 CDS YP_002292153.1 209918069 6999249 940456..941436 1 NC_011415.1 transposase 941436 6999249 ECSE_0878 Escherichia coli SE11 transposase YP_002292153.1 940456 D 409438 CDS YP_002292154.1 209918070 6999250 complement(941692..942957) 1 NC_011415.1 hypothetical protein 942957 6999250 ECSE_0879 Escherichia coli SE11 hypothetical protein YP_002292154.1 941692 R 409438 CDS YP_002292155.1 209918071 6999251 complement(943109..943924) 1 NC_011415.1 hypothetical protein 943924 6999251 ECSE_0880 Escherichia coli SE11 hypothetical protein YP_002292155.1 943109 R 409438 CDS YP_002292156.1 209918072 6999252 complement(944070..946502) 1 NC_011415.1 putative formate acetyltransferase 946502 6999252 ECSE_0881 Escherichia coli SE11 putative formate acetyltransferase YP_002292156.1 944070 R 409438 CDS YP_002292157.1 209918073 6999253 complement(946508..947434) 1 NC_011415.1 putative pyruvate formate-lyase 2 activating enzyme 947434 6999253 ECSE_0882 Escherichia coli SE11 putative pyruvate formate-lyase 2 activating enzyme YP_002292157.1 946508 R 409438 CDS YP_002292158.1 209918074 6999254 947466..948200 1 NC_011415.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 948200 6999254 ECSE_0883 Escherichia coli SE11 fructose-6-phosphate aldolase YP_002292158.1 947466 D 409438 CDS YP_002292159.1 209918075 6999255 complement(948276..949025) 1 NC_011415.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 949025 6999255 ECSE_0884 Escherichia coli SE11 molybdopterin biosynthesis protein MoeB YP_002292159.1 948276 R 409438 CDS YP_002292160.1 209918076 6999256 complement(949025..950260) 1 NC_011415.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum; molybdopterin biosynthesis protein MoeA 950260 6999256 ECSE_0885 Escherichia coli SE11 molybdopterin biosynthesis protein MoeA YP_002292160.1 949025 R 409438 CDS YP_002292161.1 209918077 6999257 950464..951429 1 NC_011415.1 L-asparaginase 951429 6999257 ECSE_0886 Escherichia coli SE11 L-asparaginase YP_002292161.1 950464 D 409438 CDS YP_002292162.1 209918078 6999258 951449..953287 1 NC_011415.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains; glutathione transporter ATP-binding protein 953287 6999258 ECSE_0887 Escherichia coli SE11 glutathione transporter ATP-binding protein YP_002292162.1 951449 D 409438 CDS YP_002292163.1 209918079 6999259 953307..954845 1 NC_011415.1 putative oligopeptide ABC transporter substrate binding component 954845 6999259 ECSE_0888 Escherichia coli SE11 putative oligopeptide ABC transporter substrate binding component YP_002292163.1 953307 D 409438 CDS YP_002292164.1 209918080 6999260 954863..955783 1 NC_011415.1 putative oligopeptide ABC transporter permease 955783 6999260 ECSE_0889 Escherichia coli SE11 putative oligopeptide ABC transporter permease YP_002292164.1 954863 D 409438 CDS YP_002292165.1 209918081 6999261 955786..956697 1 NC_011415.1 putative oligopeptide ABC transporter permease 956697 6999261 ECSE_0890 Escherichia coli SE11 putative oligopeptide ABC transporter permease YP_002292165.1 955786 D 409438 CDS YP_002292166.1 209918082 6999262 956875..959223 1 NC_011415.1 hypothetical protein 959223 6999262 ECSE_0891 Escherichia coli SE11 hypothetical protein YP_002292166.1 956875 D 409438 CDS YP_002292167.1 209918083 6999263 959231..960559 1 NC_011415.1 hypothetical protein 960559 6999263 ECSE_0892 Escherichia coli SE11 hypothetical protein YP_002292167.1 959231 D 409438 CDS YP_002292168.1 209918084 6999264 complement(960606..961931) 1 NC_011415.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 961931 rimO 6999264 rimO Escherichia coli SE11 ribosomal protein S12 methylthiotransferase YP_002292168.1 960606 R 409438 CDS YP_002292169.1 209918085 6999265 962111..962527 1 NC_011415.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssR 962527 bssR 6999265 bssR Escherichia coli SE11 biofilm formation regulatory protein BssR YP_002292169.1 962111 D 409438 CDS YP_002292170.1 209918086 6999266 962638..963753 1 NC_011415.1 putative dehydrogenase 963753 6999266 ECSE_0895 Escherichia coli SE11 putative dehydrogenase YP_002292170.1 962638 D 409438 CDS YP_002292171.1 209918087 6999267 complement(963750..964376) 1 NC_011415.1 putative transferase 964376 6999267 ECSE_0896 Escherichia coli SE11 putative transferase YP_002292171.1 963750 R 409438 CDS YP_002292172.1 209918088 6999268 964623..965825 1 NC_011415.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase fraction C 965825 6999268 ECSE_0897 Escherichia coli SE11 D-alanyl-D-alanine carboxypeptidase fraction C YP_002292172.1 964623 D 409438 CDS YP_002292173.1 209918089 6999269 complement(965872..966630) 1 NC_011415.1 DNA-binding transcriptional repressor DeoR 966630 6999269 ECSE_0898 Escherichia coli SE11 DNA-binding transcriptional repressor DeoR YP_002292173.1 965872 R 409438 CDS YP_002292174.1 209918090 6999270 complement(966688..967284) 1 NC_011415.1 undecaprenyl pyrophosphate phosphatase 967284 6999270 ECSE_0899 Escherichia coli SE11 undecaprenyl pyrophosphate phosphatase YP_002292174.1 966688 R 409438 CDS YP_002292175.1 209918091 6999271 967569..968801 1 NC_011415.1 multidrug efflux transport protein 968801 6999271 ECSE_0900 Escherichia coli SE11 multidrug efflux transport protein YP_002292175.1 967569 D 409438 CDS YP_002292176.1 209918092 6999272 complement(968842..969126) 1 NC_011415.1 hypothetical protein 969126 6999272 ECSE_0901 Escherichia coli SE11 hypothetical protein YP_002292176.1 968842 R 409438 CDS YP_002292177.1 209918093 6999273 complement(969212..970027) 1 NC_011415.1 hypothetical protein 970027 6999273 ECSE_0902 Escherichia coli SE11 hypothetical protein YP_002292177.1 969212 R 409438 CDS YP_002292178.1 209918094 6999274 complement(970027..971235) 1 NC_011415.1 putative transcriptional regulator 971235 6999274 ECSE_0903 Escherichia coli SE11 putative transcriptional regulator YP_002292178.1 970027 R 409438 CDS YP_002292179.1 209918095 6999275 971319..971855 1 NC_011415.1 putative transcriptional regulator 971855 6999275 ECSE_0904 Escherichia coli SE11 putative transcriptional regulator YP_002292179.1 971319 D 409438 CDS YP_002292180.1 209918096 6999276 complement(972030..973715) 1 NC_011415.1 hypothetical protein 973715 6999276 ECSE_0905 Escherichia coli SE11 hypothetical protein YP_002292180.1 972030 R 409438 CDS YP_002292181.1 209918097 6999277 973985..974362 1 NC_011415.1 hypothetical protein 974362 6999277 ECSE_0906 Escherichia coli SE11 hypothetical protein YP_002292181.1 973985 D 409438 CDS YP_002292182.1 209918098 6999278 complement(974392..974649) 1 NC_011415.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 974649 grxA 6999278 grxA Escherichia coli SE11 glutaredoxin 1 YP_002292182.1 974392 R 409438 CDS YP_002292183.1 209918099 6999279 974809..975096 1 NC_011415.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function; hypothetical protein 975096 6999279 ECSE_0908 Escherichia coli SE11 hypothetical protein YP_002292183.1 974809 D 409438 CDS YP_002292184.1 209918100 6999280 975080..975802 1 NC_011415.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 975802 6999280 ECSE_0909 Escherichia coli SE11 nitroreductase A YP_002292184.1 975080 D 409438 CDS YP_002292185.1 209918101 6999281 975863..976765 1 NC_011415.1 responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; ribosomal protein S6 modification protein 976765 6999281 ECSE_0910 Escherichia coli SE11 ribosomal protein S6 modification protein YP_002292185.1 975863 D 409438 CDS YP_002292186.1 209918102 6999282 976853..977329 1 NC_011415.1 hypothetical protein 977329 6999282 ECSE_0911 Escherichia coli SE11 hypothetical protein YP_002292186.1 976853 D 409438 CDS YP_002292187.1 209918103 6999283 977681..978793 1 NC_011415.1 putrescine transporter subunit: periplasmic-binding component of ABC superfamily 978793 6999283 ECSE_0912 Escherichia coli SE11 putrescine transporter subunit: periplasmic-binding component of ABC superfamily YP_002292187.1 977681 D 409438 CDS YP_002292188.1 209918104 6999284 978888..980021 1 NC_011415.1 part of the PotFGHI ATP-dependent putrescine transporter; putrescine transporter ATP-binding subunit 980021 potG 6999284 potG Escherichia coli SE11 putrescine transporter ATP-binding subunit YP_002292188.1 978888 D 409438 CDS YP_002292189.1 209918105 6999285 980031..980984 1 NC_011415.1 putrescine transporter subunit: membrane component of ABC superfamily 980984 6999285 ECSE_0914 Escherichia coli SE11 putrescine transporter subunit: membrane component of ABC superfamily YP_002292189.1 980031 D 409438 CDS YP_002292190.1 209918106 6999286 980981..981826 1 NC_011415.1 putrescine transporter subunit: membrane component of ABC superfamily 981826 6999286 ECSE_0915 Escherichia coli SE11 putrescine transporter subunit: membrane component of ABC superfamily YP_002292190.1 980981 D 409438 CDS YP_002292191.1 209918107 6999287 981901..982374 1 NC_011415.1 hypothetical protein 982374 6999287 ECSE_0916 Escherichia coli SE11 hypothetical protein YP_002292191.1 981901 D 409438 CDS YP_002292192.1 209918108 6999288 982415..983542 1 NC_011415.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 983542 rumB 6999288 rumB Escherichia coli SE11 23S rRNA methyluridine methyltransferase YP_002292192.1 982415 D 409438 CDS YP_002292193.1 209918109 6999289 complement(983717..984448) 1 NC_011415.1 arginine ABC transporter substrate binding component 984448 6999289 ECSE_0918 Escherichia coli SE11 arginine ABC transporter substrate binding component YP_002292193.1 983717 R 409438 CDS YP_002292194.1 209918110 6999290 complement(984740..985408) 1 NC_011415.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 985408 artM 6999290 artM Escherichia coli SE11 arginine transporter permease subunit ArtM YP_002292194.1 984740 R 409438 CDS YP_002292195.1 209918111 6999291 complement(985408..986124) 1 NC_011415.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 986124 6999291 ECSE_0920 Escherichia coli SE11 arginine transporter permease subunit ArtQ YP_002292195.1 985408 R 409438 CDS YP_002292196.1 209918112 6999292 complement(986131..986862) 1 NC_011415.1 arginine ABC transporter substrate binding component 986862 6999292 ECSE_0921 Escherichia coli SE11 arginine ABC transporter substrate binding component YP_002292196.1 986131 R 409438 CDS YP_002292197.1 209918113 6999293 complement(986880..987608) 1 NC_011415.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 987608 artP 6999293 artP Escherichia coli SE11 arginine transporter ATP-binding subunit YP_002292197.1 986880 R 409438 CDS YP_002292198.1 209918114 6999294 complement(987826..988341) 1 NC_011415.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS; putative lipoprotein 988341 6999294 ECSE_0923 Escherichia coli SE11 putative lipoprotein YP_002292198.1 987826 R 409438 CDS YP_002292199.1 209918115 6999295 988467..988790 1 NC_011415.1 hypothetical protein 988790 6999295 ECSE_0924 Escherichia coli SE11 hypothetical protein YP_002292199.1 988467 D 409438 CDS YP_002292200.1 209918116 6999296 988787..989617 1 NC_011415.1 putative regulator 989617 6999296 ECSE_0925 Escherichia coli SE11 putative regulator YP_002292200.1 988787 D 409438 CDS YP_002292201.1 209918117 6999297 complement(989614..990663) 1 NC_011415.1 putative nucleoside-diphosphate-sugar epimerase 990663 6999297 ECSE_0926 Escherichia coli SE11 putative nucleoside-diphosphate-sugar epimerase YP_002292201.1 989614 R 409438 CDS YP_002292202.1 209918118 6999298 complement(990726..992156) 1 NC_011415.1 hypothetical protein 992156 6999298 ECSE_0927 Escherichia coli SE11 hypothetical protein YP_002292202.1 990726 R 409438 CDS YP_002292203.1 209918119 6999299 complement(992167..993168) 1 NC_011415.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine; L-threonine aldolase 993168 6999299 ECSE_0928 Escherichia coli SE11 L-threonine aldolase YP_002292203.1 992167 R 409438 CDS YP_002292204.1 209918120 6999300 complement(993205..994923) 1 NC_011415.1 catalyzes the formation of acetate from pyruvate; pyruvate dehydrogenase 994923 6999300 ECSE_0929 Escherichia coli SE11 pyruvate dehydrogenase YP_002292204.1 993205 R 409438 CDS YP_002292205.1 209918121 6999301 complement(995056..996024) 1 NC_011415.1 HCP oxidoreductase, NADH-dependent 996024 6999301 ECSE_0930 Escherichia coli SE11 HCP oxidoreductase, NADH-dependent YP_002292205.1 995056 R 409438 CDS YP_002292206.1 209918122 6999302 complement(996036..997688) 1 NC_011415.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 997688 6999302 ECSE_0931 Escherichia coli SE11 hydroxylamine reductase YP_002292206.1 996036 R 409438 CDS YP_002292207.1 209918123 6999303 complement(997832..998731) 1 NC_011415.1 hypothetical protein 998731 6999303 ECSE_0932 Escherichia coli SE11 hypothetical protein YP_002292207.1 997832 R 409438 CDS YP_002292208.1 209918124 6999304 complement(999226..999921) 1 NC_011415.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 999921 6999304 ECSE_0933 Escherichia coli SE11 aquaporin Z YP_002292208.1 999226 R 409438 CDS YP_002292209.1 209918125 6999305 1000347..1002005 1 NC_011415.1 hypothetical protein 1002005 6999305 ECSE_0934 Escherichia coli SE11 hypothetical protein YP_002292209.1 1000347 D 409438 CDS YP_002292210.1 209918126 6999306 complement(1002002..1002994) 1 NC_011415.1 hypothetical protein 1002994 6999306 ECSE_0935 Escherichia coli SE11 hypothetical protein YP_002292210.1 1002002 R 409438 CDS YP_002292211.1 209918127 6999307 1003109..1004224 1 NC_011415.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 1004224 6999307 ECSE_0936 Escherichia coli SE11 macrolide transporter subunit MacA YP_002292211.1 1003109 D 409438 CDS YP_002292212.1 209918128 6999308 1004221..1006167 1 NC_011415.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 1006167 6999308 ECSE_0937 Escherichia coli SE11 macrolide transporter ATP-binding /permease YP_002292212.1 1004221 D 409438 CDS YP_002292213.1 209918129 6999309 complement(1006240..1006464) 1 NC_011415.1 inhibits DNA replication at both initiation and elongation steps; stationary phase and starvation inducible; stationary phase/starvation inducible regulatory protein CspD 1006464 6999309 ECSE_0938 Escherichia coli SE11 stationary phase/starvation inducible regulatory protein CspD YP_002292213.1 1006240 R 409438 CDS YP_002292214.1 209918130 6999310 1006787..1007107 1 NC_011415.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1007107 clpS 6999310 clpS Escherichia coli SE11 ATP-dependent Clp protease adaptor protein ClpS YP_002292214.1 1006787 D 409438 CDS YP_002292215.1 209918131 6999311 1007138..1009414 1 NC_011415.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; ATP-dependent Clp protease ATP-binding subunit 1009414 clpA 6999311 clpA Escherichia coli SE11 ATP-dependent Clp protease ATP-binding subunit YP_002292215.1 1007138 D 409438 CDS YP_002292216.1 209918132 6999312 complement(1009493..1009732) 1 NC_011415.1 hypothetical protein 1009732 6999312 ECSE_0941 Escherichia coli SE11 hypothetical protein YP_002292216.1 1009493 R 409438 CDS YP_002292217.1 209918133 7003150 complement(1010099..1010317) 1 NC_011415.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1010317 infA 7003150 infA Escherichia coli SE11 translation initiation factor IF-1 YP_002292217.1 1010099 R 409438 CDS YP_002292218.1 209918134 6999314 complement(1010602..1011306) 1 NC_011415.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1011306 aat 6999314 aat Escherichia coli SE11 leucyl/phenylalanyl-tRNA--protein transferase YP_002292218.1 1010602 R 409438 CDS YP_002292219.1 209918135 6999315 complement(1011348..1013069) 1 NC_011415.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1013069 6999315 ECSE_0944 Escherichia coli SE11 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_002292219.1 1011348 R 409438 CDS YP_002292220.1 209918136 6999316 complement(1013070..1014836) 1 NC_011415.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1014836 6999316 ECSE_0945 Escherichia coli SE11 cysteine/glutathione ABC transporter membrane/ATP-binding component YP_002292220.1 1013070 R 409438 CDS YP_002292221.1 209918137 6999317 complement(1014959..1015924) 1 NC_011415.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; thioredoxin reductase 1015924 6999317 ECSE_0946 Escherichia coli SE11 thioredoxin reductase YP_002292221.1 1014959 R 409438 CDS YP_002292222.1 209918138 6999318 1016469..1016963 1 NC_011415.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1016963 6999318 ECSE_0947 Escherichia coli SE11 leucine-responsive transcriptional regulator YP_002292222.1 1016469 D 409438 CDS YP_002292223.1 209918139 6999319 1017098..1021165 1 NC_011415.1 DNA-binding membrane protein required for chromosome resolution and partitioning; DNA translocase FtsK 1021165 6999319 ECSE_0948 Escherichia coli SE11 DNA translocase FtsK YP_002292223.1 1017098 D 409438 CDS YP_002292224.1 209918140 6999320 1021317..1021931 1 NC_011415.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 1021931 lolA 6999320 lolA Escherichia coli SE11 outer-membrane lipoprotein carrier protein YP_002292224.1 1021317 D 409438 CDS YP_002292225.1 209918141 6999321 1021942..1023285 1 NC_011415.1 recombination factor protein RarA 1023285 6999321 ECSE_0950 Escherichia coli SE11 recombination factor protein RarA YP_002292225.1 1021942 D 409438 CDS YP_002292226.1 209918142 6999322 1023376..1024668 1 NC_011415.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1024668 6999322 ECSE_0951 Escherichia coli SE11 seryl-tRNA synthetase YP_002292226.1 1023376 D 409438 CDS YP_002292227.1 209918143 6999323 1024907..1027351 1 NC_011415.1 anaerobic dimethyl sulfoxide reductase subunit A 1027351 6999323 ECSE_0952 Escherichia coli SE11 anaerobic dimethyl sulfoxide reductase subunit A YP_002292227.1 1024907 D 409438 CDS YP_002292228.1 209918144 6999324 1027362..1027979 1 NC_011415.1 anaerobic dimethyl sulfoxide reductase subunit B 1027979 6999324 ECSE_0953 Escherichia coli SE11 anaerobic dimethyl sulfoxide reductase subunit B YP_002292228.1 1027362 D 409438 CDS YP_002292229.1 209918145 6999325 1027981..1028844 1 NC_011415.1 anaerobic dimethyl sulfoxide reductase subunit C 1028844 6999325 ECSE_0954 Escherichia coli SE11 anaerobic dimethyl sulfoxide reductase subunit C YP_002292229.1 1027981 D 409438 CDS YP_002292230.1 209918146 6999326 complement(1028880..1029506) 1 NC_011415.1 hypothetical protein 1029506 6999326 ECSE_0955 Escherichia coli SE11 hypothetical protein YP_002292230.1 1028880 R 409438 CDS YP_002292231.1 209918147 6999327 complement(1029662..1029790) 1 NC_011415.1 hypothetical protein 1029790 6999327 ECSE_0956 Escherichia coli SE11 hypothetical protein YP_002292231.1 1029662 R 409438 CDS YP_002292232.1 209918148 6999328 1029821..1030969 1 NC_011415.1 putative MFS family transporter protein 1030969 6999328 ECSE_0957 Escherichia coli SE11 putative MFS family transporter protein YP_002292232.1 1029821 D 409438 CDS YP_002292233.1 209918149 6999329 1030987..1032609 1 NC_011415.1 putative transport protein 1032609 6999329 ECSE_0958 Escherichia coli SE11 putative transport protein YP_002292233.1 1030987 D 409438 CDS YP_002292234.1 209918150 6999330 complement(1032610..1033518) 1 NC_011415.1 putative transcriptional regulator 1033518 6999330 ECSE_0959 Escherichia coli SE11 putative transcriptional regulator YP_002292234.1 1032610 R 409438 CDS YP_002292235.1 209918151 6999331 1033618..1034208 1 NC_011415.1 hypothetical protein 1034208 6999331 ECSE_0960 Escherichia coli SE11 hypothetical protein YP_002292235.1 1033618 D 409438 CDS YP_002292236.1 209918152 6999332 complement(1034290..1035030) 1 NC_011415.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1035030 pflA 6999332 pflA Escherichia coli SE11 pyruvate formate lyase-activating enzyme 1 YP_002292236.1 1034290 R 409438 CDS YP_002292237.1 209918153 6999333 complement(1035222..1037504) 1 NC_011415.1 formate acetyltransferase 1 1037504 6999333 ECSE_0962 Escherichia coli SE11 formate acetyltransferase 1 YP_002292237.1 1035222 R 409438 CDS YP_002292238.1 209918154 6999334 complement(1037559..1038416) 1 NC_011415.1 formate transporter 1038416 6999334 ECSE_0963 Escherichia coli SE11 formate transporter YP_002292238.1 1037559 R 409438 CDS YP_002292239.1 209918155 6999335 complement(1038822..1040591) 1 NC_011415.1 hypothetical protein 1040591 6999335 ECSE_0964 Escherichia coli SE11 hypothetical protein YP_002292239.1 1038822 R 409438 CDS YP_002292240.1 209918156 6999336 1040712..1041404 1 NC_011415.1 hypothetical protein 1041404 6999336 ECSE_0965 Escherichia coli SE11 hypothetical protein YP_002292240.1 1040712 D 409438 CDS YP_002292241.1 209918157 6999337 1041603..1042691 1 NC_011415.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1042691 6999337 ECSE_0966 Escherichia coli SE11 phosphoserine aminotransferase YP_002292241.1 1041603 D 409438 CDS YP_002292242.1 209918158 6999338 1042762..1044045 1 NC_011415.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1044045 6999338 ECSE_0967 Escherichia coli SE11 3-phosphoshikimate 1-carboxyvinyltransferase YP_002292242.1 1042762 D 409438 CDS YP_002292243.1 209918159 6999339 1044214..1044978 1 NC_011415.1 putative heat shock protein 1044978 6999339 ECSE_0968 Escherichia coli SE11 putative heat shock protein YP_002292243.1 1044214 D 409438 CDS YP_002292244.1 209918160 6999340 1045151..1045834 1 NC_011415.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1045834 cmk 6999340 cmk Escherichia coli SE11 cytidylate kinase YP_002292244.1 1045151 D 409438 CDS YP_002292245.1 209918161 6999341 1045945..1047618 1 NC_011415.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1047618 rpsA 6999341 rpsA Escherichia coli SE11 30S ribosomal protein S1 YP_002292245.1 1045945 D 409438 CDS YP_002292246.1 209918162 6999342 1047778..1048062 1 NC_011415.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1048062 ihfB 6999342 ihfB Escherichia coli SE11 integration host factor subunit beta YP_002292246.1 1047778 D 409438 CDS YP_002292247.1 209918163 6999343 1048269..1050533 1 NC_011415.1 hypothetical protein 1050533 6999343 ECSE_0972 Escherichia coli SE11 hypothetical protein YP_002292247.1 1048269 D 409438 CDS YP_002292248.1 209918164 6999344 1050570..1052318 1 NC_011415.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1052318 6999344 ECSE_0973 Escherichia coli SE11 lipid transporter ATP-binding/permease YP_002292248.1 1050570 D 409438 CDS YP_002292249.1 209918165 6999345 1052315..1053301 1 NC_011415.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1053301 lpxK 6999345 lpxK Escherichia coli SE11 tetraacyldisaccharide 4'-kinase YP_002292249.1 1052315 D 409438 CDS YP_002292250.1 209918166 6999346 1053338..1054570 1 NC_011415.1 hypothetical protein 1054570 6999346 ECSE_0975 Escherichia coli SE11 hypothetical protein YP_002292250.1 1053338 D 409438 CDS YP_002292251.1 209918167 6999347 1054622..1054804 1 NC_011415.1 hypothetical protein 1054804 6999347 ECSE_0976 Escherichia coli SE11 hypothetical protein YP_002292251.1 1054622 D 409438 CDS YP_002292252.1 209918168 6999348 1054801..1055547 1 NC_011415.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1055547 6999348 ECSE_0977 Escherichia coli SE11 3-deoxy-manno-octulosonate cytidylyltransferase YP_002292252.1 1054801 D 409438 CDS YP_002292253.1 209918169 6999349 1055701..1056594 1 NC_011415.1 hypothetical protein 1056594 6999349 ECSE_0978 Escherichia coli SE11 hypothetical protein YP_002292253.1 1055701 D 409438 CDS YP_002292254.1 209918170 6999350 complement(1056571..1057350) 1 NC_011415.1 hypothetical protein 1057350 6999350 ECSE_0979 Escherichia coli SE11 hypothetical protein YP_002292254.1 1056571 R 409438 CDS YP_002292255.1 209918171 6999351 1057486..1058271 1 NC_011415.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA; putative metallothionein SmtA 1058271 6999351 ECSE_0980 Escherichia coli SE11 putative metallothionein SmtA YP_002292255.1 1057486 D 409438 CDS YP_002292256.1 209918172 6999352 1058268..1059590 1 NC_011415.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1059590 6999352 ECSE_0981 Escherichia coli SE11 condesin subunit F YP_002292256.1 1058268 D 409438 CDS YP_002292257.1 209918173 6999353 1059598..1060275 1 NC_011415.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1060275 6999353 ECSE_0982 Escherichia coli SE11 condesin subunit E YP_002292257.1 1059598 D 409438 CDS YP_002292258.1 209918174 6999354 1060275..1064735 1 NC_011415.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1064735 mukB 6999354 mukB Escherichia coli SE11 cell division protein MukB YP_002292258.1 1060275 D 409438 CDS YP_002292259.1 209918175 6999355 1064996..1066843 1 NC_011415.1 hypothetical protein 1066843 6999355 ECSE_0984 Escherichia coli SE11 hypothetical protein YP_002292259.1 1064996 D 409438 CDS YP_002292260.1 209918176 6999356 1067024..1067572 1 NC_011415.1 hypothetical protein 1067572 6999356 ECSE_0985 Escherichia coli SE11 hypothetical protein YP_002292260.1 1067024 D 409438 CDS YP_002292261.1 209918177 6999357 1067599..1068246 1 NC_011415.1 hypothetical protein 1068246 6999357 ECSE_0986 Escherichia coli SE11 hypothetical protein YP_002292261.1 1067599 D 409438 CDS YP_002292262.1 209918178 6999358 complement(1068468..1069658) 1 NC_011415.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1069658 6999358 ECSE_0987 Escherichia coli SE11 aromatic amino acid aminotransferase YP_002292262.1 1068468 R 409438 CDS YP_002292263.1 209918179 6999359 complement(1069843..1070931) 1 NC_011415.1 outer membrane porin F; 1a; Ia; b; outer membrane protein F 1070931 6999359 ECSE_0988 Escherichia coli SE11 outer membrane protein F YP_002292263.1 1069843 R 409438 CDS YP_002292264.1 209918180 6999360 1071255..1071410 1 NC_011415.1 hypothetical protein 1071410 6999360 ECSE_0989 Escherichia coli SE11 hypothetical protein YP_002292264.1 1071255 D 409438 CDS YP_002292265.1 209918181 6999361 complement(1071533..1072933) 1 NC_011415.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1072933 asnC 6999361 asnC Escherichia coli SE11 asparaginyl-tRNA synthetase YP_002292265.1 1071533 R 409438 CDS YP_002292266.1 209918182 6999362 complement(1073102..1074304) 1 NC_011415.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1074304 6999362 ECSE_0991 Escherichia coli SE11 nicotinate phosphoribosyltransferase YP_002292266.1 1073102 R 409438 CDS YP_002292267.1 209918183 6999363 1074412..1074534 1 NC_011415.1 hypothetical protein 1074534 6999363 ECSE_0992 Escherichia coli SE11 hypothetical protein YP_002292267.1 1074412 D 409438 CDS YP_002292268.1 209918184 6999364 1074570..1077182 1 NC_011415.1 aminopeptidase N 1077182 pepN 6999364 pepN Escherichia coli SE11 aminopeptidase N YP_002292268.1 1074570 D 409438 CDS YP_002292269.1 209918185 6999365 complement(1077389..1078156) 1 NC_011415.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 1078156 ssuB 6999365 ssuB Escherichia coli SE11 aliphatic sulfonates transport ATP-binding subunit YP_002292269.1 1077389 R 409438 CDS YP_002292270.1 209918186 6999366 complement(1078153..1078944) 1 NC_011415.1 part of the ABC type transport system for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease; alkanesulfonate transporter permease subunit 1078944 ssuC 6999366 ssuC Escherichia coli SE11 alkanesulfonate transporter permease subunit YP_002292270.1 1078153 R 409438 CDS YP_002292271.1 209918187 6999367 complement(1078955..1080100) 1 NC_011415.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 1080100 6999367 ECSE_0996 Escherichia coli SE11 alkanesulfonate monooxygenase YP_002292271.1 1078955 R 409438 CDS YP_002292272.1 209918188 6999368 complement(1080097..1081056) 1 NC_011415.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease; alkanesulfonate transporter substrate-binding subunit 1081056 6999368 ECSE_0997 Escherichia coli SE11 alkanesulfonate transporter substrate-binding subunit YP_002292272.1 1080097 R 409438 CDS YP_002292273.1 209918189 6999369 complement(1081049..1081624) 1 NC_011415.1 NAD(P)H-dependent FMN reductase 1081624 6999369 ECSE_0998 Escherichia coli SE11 NAD(P)H-dependent FMN reductase YP_002292273.1 1081049 R 409438 CDS YP_002292274.1 209918190 6999370 1081980..1082522 1 NC_011415.1 putative fimbrial protein 1082522 6999370 ECSE_0999 Escherichia coli SE11 putative fimbrial protein YP_002292274.1 1081980 D 409438 CDS YP_002292275.1 209918191 6999371 1082605..1083306 1 NC_011415.1 putative fimbrial chaperone 1083306 6999371 ECSE_1000 Escherichia coli SE11 putative fimbrial chaperone YP_002292275.1 1082605 D 409438 CDS YP_002292276.1 209918192 6999372 1083331..1085931 1 NC_011415.1 putative fimbrial usher protein 1085931 6999372 ECSE_1001 Escherichia coli SE11 putative fimbrial usher protein YP_002292276.1 1083331 D 409438 CDS YP_002292277.1 209918193 6999373 1085922..1086992 1 NC_011415.1 putative fimbrial protein 1086992 6999373 ECSE_1002 Escherichia coli SE11 putative fimbrial protein YP_002292277.1 1085922 D 409438 CDS YP_002292278.1 209918194 6999374 1087004..1087546 1 NC_011415.1 putative fimbrial protein 1087546 6999374 ECSE_1003 Escherichia coli SE11 putative fimbrial protein YP_002292278.1 1087004 D 409438 CDS YP_002292279.1 209918195 6999375 1087506..1088069 1 NC_011415.1 putative fimbrial protein 1088069 6999375 ECSE_1004 Escherichia coli SE11 putative fimbrial protein YP_002292279.1 1087506 D 409438 CDS YP_002292280.1 209918196 6999376 1088035..1088772 1 NC_011415.1 putativi pili assembly chaperone 1088772 6999376 ECSE_1005 Escherichia coli SE11 putativi pili assembly chaperone YP_002292280.1 1088035 D 409438 CDS YP_002292281.1 209918197 6999377 1088883..1089893 1 NC_011415.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 1089893 6999377 ECSE_1006 Escherichia coli SE11 dihydroorotate dehydrogenase 2 YP_002292281.1 1088883 D 409438 CDS YP_002292282.1 209918198 6999378 1090067..1090609 1 NC_011415.1 hypothetical protein 1090609 6999378 ECSE_1007 Escherichia coli SE11 hypothetical protein YP_002292282.1 1090067 D 409438 CDS YP_002292283.1 209918199 6999379 complement(1090606..1091715) 1 NC_011415.1 hypothetical protein 1091715 6999379 ECSE_1008 Escherichia coli SE11 hypothetical protein YP_002292283.1 1090606 R 409438 CDS YP_002292284.1 209918200 6999380 1091959..1094067 1 NC_011415.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1094067 rlmL 6999380 rlmL Escherichia coli SE11 23S rRNA m(2)G2445 methyltransferase YP_002292284.1 1091959 D 409438 CDS YP_002292285.1 209918201 6999381 1094078..1095985 1 NC_011415.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 1095985 6999381 ECSE_1010 Escherichia coli SE11 ABC transporter ATPase YP_002292285.1 1094078 D 409438 CDS YP_002292286.1 209918202 6999382 1096115..1097368 1 NC_011415.1 paraquat-inducible protein A 1097368 6999382 ECSE_1011 Escherichia coli SE11 paraquat-inducible protein A YP_002292286.1 1096115 D 409438 CDS YP_002292287.1 209918203 6999383 1097373..1099013 1 NC_011415.1 paraquat-inducible protein B 1099013 6999383 ECSE_1012 Escherichia coli SE11 paraquat-inducible protein B YP_002292287.1 1097373 D 409438 CDS YP_002292288.1 209918204 6999384 1099010..1099573 1 NC_011415.1 hypothetical protein 1099573 6999384 ECSE_1013 Escherichia coli SE11 hypothetical protein YP_002292288.1 1099010 D 409438 CDS YP_002292289.1 209918205 6999385 1099829..1099996 1 NC_011415.1 ribosome modulation factor 1099996 6999385 ECSE_1014 Escherichia coli SE11 ribosome modulation factor YP_002292289.1 1099829 D 409438 CDS YP_002292290.1 209918206 6999386 complement(1100066..1100584) 1 NC_011415.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 1100584 6999386 ECSE_1015 Escherichia coli SE11 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_002292290.1 1100066 R 409438 CDS YP_002292291.1 209918207 6999387 complement(1100653..1102413) 1 NC_011415.1 putative ATP-dependent protease 1102413 6999387 ECSE_1016 Escherichia coli SE11 putative ATP-dependent protease YP_002292291.1 1100653 R 409438 CDS YP_002292292.1 209918208 6999388 1102599..1103051 1 NC_011415.1 hypothetical protein 1103051 6999388 ECSE_1017 Escherichia coli SE11 hypothetical protein YP_002292292.1 1102599 D 409438 CDS YP_002292293.1 209918209 6999389 complement(1103127..1104167) 1 NC_011415.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 1104167 6999389 ECSE_1018 Escherichia coli SE11 outer membrane protein A YP_002292293.1 1103127 R 409438 CDS YP_002292294.1 209918210 6999390 1104322..1104540 1 NC_011415.1 hypothetical protein 1104540 6999390 ECSE_1019 Escherichia coli SE11 hypothetical protein YP_002292294.1 1104322 D 409438 CDS YP_002292295.1 209918211 6999391 complement(1104524..1105033) 1 NC_011415.1 SOS cell division inhibitor 1105033 6999391 ECSE_1020 Escherichia coli SE11 SOS cell division inhibitor YP_002292295.1 1104524 R 409438 CDS YP_002292296.1 209918212 6999392 1105252..1105881 1 NC_011415.1 hypothetical protein 1105881 6999392 ECSE_1021 Escherichia coli SE11 hypothetical protein YP_002292296.1 1105252 D 409438 CDS YP_002292297.1 209918213 6999393 complement(1105844..1108006) 1 NC_011415.1 hypothetical protein 1108006 6999393 ECSE_1022 Escherichia coli SE11 hypothetical protein YP_002292297.1 1105844 R 409438 CDS YP_002292298.1 209918214 6999394 complement(1108016..1108462) 1 NC_011415.1 hypothetical protein 1108462 6999394 ECSE_1023 Escherichia coli SE11 hypothetical protein YP_002292298.1 1108016 R 409438 CDS YP_002292299.1 209918215 6999395 1108585..1110639 1 NC_011415.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand; DNA helicase IV 1110639 helD 6999395 helD Escherichia coli SE11 DNA helicase IV YP_002292299.1 1108585 D 409438 CDS YP_002292300.1 209918216 6999396 complement(1110671..1111129) 1 NC_011415.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1111129 mgsA 6999396 mgsA Escherichia coli SE11 methylglyoxal synthase YP_002292300.1 1110671 R 409438 CDS YP_002292301.1 209918217 6999397 complement(1111225..1111887) 1 NC_011415.1 hypothetical protein 1111887 6999397 ECSE_1026 Escherichia coli SE11 hypothetical protein YP_002292301.1 1111225 R 409438 CDS YP_002292302.1 209918218 6999398 1112060..1112473 1 NC_011415.1 hypothetical protein 1112473 6999398 ECSE_1027 Escherichia coli SE11 hypothetical protein YP_002292302.1 1112060 D 409438 CDS YP_002292303.1 209918219 6999399 complement(1112518..1112835) 1 NC_011415.1 heat shock protein HspQ 1112835 6999399 ECSE_1028 Escherichia coli SE11 heat shock protein HspQ YP_002292303.1 1112518 R 409438 CDS YP_002292304.1 209918220 6999400 complement(1112893..1114083) 1 NC_011415.1 hypothetical protein 1114083 6999400 ECSE_1029 Escherichia coli SE11 hypothetical protein YP_002292304.1 1112893 R 409438 CDS YP_002292305.1 209918221 6999401 1114178..1114456 1 NC_011415.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 1114456 6999401 ECSE_1030 Escherichia coli SE11 acylphosphatase YP_002292305.1 1114178 D 409438 CDS YP_002292306.1 209918222 6999402 complement(1114453..1114782) 1 NC_011415.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein TusE 1114782 6999402 ECSE_1031 Escherichia coli SE11 sulfur transfer protein TusE YP_002292306.1 1114453 R 409438 CDS YP_002292307.1 209918223 6999403 complement(1114873..1115532) 1 NC_011415.1 hypothetical protein 1115532 6999403 ECSE_1032 Escherichia coli SE11 hypothetical protein YP_002292307.1 1114873 R 409438 CDS YP_002292308.1 209918224 7003149 complement(1116094..1116234) 1 NC_011415.1 hypothetical protein 1116234 7003149 ECSE_1033 Escherichia coli SE11 hypothetical protein YP_002292308.1 1116094 R 409438 CDS YP_002292309.1 209918225 6999405 1116253..1117371 1 NC_011415.1 hydrogenase-1 small subunit 1117371 6999405 ECSE_1034 Escherichia coli SE11 hydrogenase-1 small subunit YP_002292309.1 1116253 D 409438 CDS YP_002292310.1 209918226 6999406 1117368..1119161 1 NC_011415.1 involved in hydrogen cycling during fermentative growth; hydrogenase 1 large subunit 1119161 6999406 ECSE_1035 Escherichia coli SE11 hydrogenase 1 large subunit YP_002292310.1 1117368 D 409438 CDS YP_002292311.1 209918227 6999407 1119180..1119887 1 NC_011415.1 hydrogenase 1 b-type cytochrome subunit 1119887 6999407 ECSE_1036 Escherichia coli SE11 hydrogenase 1 b-type cytochrome subunit YP_002292311.1 1119180 D 409438 CDS YP_002292312.1 209918228 6999408 1119884..1120471 1 NC_011415.1 HyaD; endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1); hydrogenase 1 maturation protease 1120471 6999408 ECSE_1037 Escherichia coli SE11 hydrogenase 1 maturation protease YP_002292312.1 1119884 D 409438 CDS YP_002292313.1 209918229 6999409 1120468..1120866 1 NC_011415.1 involved in processing hydrogenase proteins HyaA and HyaB; hydrogenase-1 operon protein HyaE 1120866 6999409 ECSE_1038 Escherichia coli SE11 hydrogenase-1 operon protein HyaE YP_002292313.1 1120468 D 409438 CDS YP_002292314.1 209918230 6999410 1120863..1121720 1 NC_011415.1 hydrogenase 1 maturation protease HyaF 1121720 6999410 ECSE_1039 Escherichia coli SE11 hydrogenase 1 maturation protease HyaF YP_002292314.1 1120863 D 409438 CDS YP_002292315.1 209918231 6999411 1121854..1123398 1 NC_011415.1 cytochrome D ubiquinol oxidase subunit I 1123398 6999411 ECSE_1040 Escherichia coli SE11 cytochrome D ubiquinol oxidase subunit I YP_002292315.1 1121854 D 409438 CDS YP_002292316.1 209918232 6999412 1123410..1124546 1 NC_011415.1 cytochrome D ubiquinol oxidase subunit II 1124546 6999412 ECSE_1041 Escherichia coli SE11 cytochrome D ubiquinol oxidase subunit II YP_002292316.1 1123410 D 409438 CDS YP_002292317.1 209918233 6999413 1124731..1126029 1 NC_011415.1 phosphoanhydride phosphorylase 1126029 6999413 ECSE_1042 Escherichia coli SE11 phosphoanhydride phosphorylase YP_002292317.1 1124731 D 409438 CDS YP_002292318.1 209918234 6999414 complement(1126144..1128324) 1 NC_011415.1 cryptic autophosphorylating protein tyrosine kinase Etk 1128324 6999414 ECSE_1043 Escherichia coli SE11 cryptic autophosphorylating protein tyrosine kinase Etk YP_002292318.1 1126144 R 409438 CDS YP_002292319.1 209918235 6999415 complement(1128344..1128802) 1 NC_011415.1 Etk and Etp are a tyrosine kinase-tyrosine phosphatase pair, etp dephosphorylates etk; phosphotyrosine-protein phosphatase 1128802 etp 6999415 etp Escherichia coli SE11 phosphotyrosine-protein phosphatase YP_002292319.1 1128344 R 409438 CDS YP_002292320.1 209918236 6999416 complement(1128778..1129917) 1 NC_011415.1 putative capsule polysaccharide export protein 1129917 6999416 ECSE_1045 Escherichia coli SE11 putative capsule polysaccharide export protein YP_002292320.1 1128778 R 409438 CDS YP_002292321.1 209918237 6999417 complement(1129963..1132059) 1 NC_011415.1 hypothetical protein 1132059 6999417 ECSE_1046 Escherichia coli SE11 hypothetical protein YP_002292321.1 1129963 R 409438 CDS YP_002292322.1 209918238 6999418 complement(1132059..1132805) 1 NC_011415.1 hypothetical protein 1132805 6999418 ECSE_1047 Escherichia coli SE11 hypothetical protein YP_002292322.1 1132059 R 409438 CDS YP_002292323.1 209918239 6999419 complement(1132802..1133446) 1 NC_011415.1 putative regulator 1133446 6999419 ECSE_1048 Escherichia coli SE11 putative regulator YP_002292323.1 1132802 R 409438 CDS YP_002292324.1 209918240 6999420 complement(1133553..1133876) 1 NC_011415.1 hypothetical protein 1133876 6999420 ECSE_1049 Escherichia coli SE11 hypothetical protein YP_002292324.1 1133553 R 409438 CDS YP_002292325.1 209918241 6999421 complement(1134300..1134512) 1 NC_011415.1 cold shock-like protein 1134512 6999421 ECSE_1050 Escherichia coli SE11 cold shock-like protein YP_002292325.1 1134300 R 409438 CDS YP_002292326.1 209918242 6999422 1134798..1135010 1 NC_011415.1 cold shock protein CspG 1135010 6999422 ECSE_1051 Escherichia coli SE11 cold shock protein CspG YP_002292326.1 1134798 D 409438 CDS YP_002292327.1 209918243 6999423 1135151..1135414 1 NC_011415.1 cold shock gene 1135414 6999423 ECSE_1052 Escherichia coli SE11 cold shock gene YP_002292327.1 1135151 D 409438 CDS YP_002292328.1 209918244 6999424 1135404..1135577 1 NC_011415.1 hypothetical protein 1135577 6999424 ECSE_1053 Escherichia coli SE11 hypothetical protein YP_002292328.1 1135404 D 409438 CDS YP_002292329.1 209918245 6999425 complement(1135625..1136698) 1 NC_011415.1 hypothetical protein 1136698 6999425 ECSE_1054 Escherichia coli SE11 hypothetical protein YP_002292329.1 1135625 R 409438 CDS YP_002292330.1 209918246 6999426 complement(1136770..1139484) 1 NC_011415.1 Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide; hybrid sensory histidine kinase TorS 1139484 6999426 ECSE_1055 Escherichia coli SE11 hybrid sensory histidine kinase TorS YP_002292330.1 1136770 R 409438 CDS YP_002292331.1 209918247 6999427 1139597..1140625 1 NC_011415.1 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT 1140625 6999427 ECSE_1056 Escherichia coli SE11 TMAO reductase system periplasmic protein TorT YP_002292331.1 1139597 D 409438 CDS YP_002292332.1 209918248 6999428 complement(1140598..1141290) 1 NC_011415.1 response regulator in two-component regulatory system with TorS; involved in regulation of trimethylamine N-oxide reductase genes; DNA-binding transcriptional regulator TorR 1141290 6999428 ECSE_1057 Escherichia coli SE11 DNA-binding transcriptional regulator TorR YP_002292332.1 1140598 R 409438 CDS YP_002292333.1 209918249 6999429 1141420..1142592 1 NC_011415.1 cytochrome c-type protein 1142592 6999429 ECSE_1058 Escherichia coli SE11 cytochrome c-type protein YP_002292333.1 1141420 D 409438 CDS YP_002292334.1 209918250 6999430 1142592..1145138 1 NC_011415.1 trimethylamine N-oxide reductase subunit 1145138 6999430 ECSE_1059 Escherichia coli SE11 trimethylamine N-oxide reductase subunit YP_002292334.1 1142592 D 409438 CDS YP_002292335.1 209918251 6999431 1145135..1145734 1 NC_011415.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1145734 torD 6999431 torD Escherichia coli SE11 chaperone protein TorD YP_002292335.1 1145135 D 409438 CDS YP_002292336.1 209918252 6999432 complement(1145827..1146132) 1 NC_011415.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA; chaperone-modulator protein CbpM 1146132 6999432 ECSE_1061 Escherichia coli SE11 chaperone-modulator protein CbpM YP_002292336.1 1145827 R 409438 CDS YP_002292337.1 209918253 6999433 complement(1146132..1147052) 1 NC_011415.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock; curved DNA-binding protein CbpA 1147052 6999433 ECSE_1062 Escherichia coli SE11 curved DNA-binding protein CbpA YP_002292337.1 1146132 R 409438 CDS YP_002292338.1 209918254 6999434 1147313..1148572 1 NC_011415.1 hypothetical protein 1148572 6999434 ECSE_1063 Escherichia coli SE11 hypothetical protein YP_002292338.1 1147313 D 409438 CDS YP_002292339.1 209918255 6999435 1148861..1150102 1 NC_011415.1 glucose-1-phosphatase/inositol phosphatase 1150102 6999435 ECSE_1064 Escherichia coli SE11 glucose-1-phosphatase/inositol phosphatase YP_002292339.1 1148861 D 409438 CDS YP_002292340.1 209918256 6999436 complement(1150140..1150367) 1 NC_011415.1 hypothetical protein 1150367 6999436 ECSE_1065 Escherichia coli SE11 hypothetical protein YP_002292340.1 1150140 R 409438 CDS YP_002292341.1 209918257 6999437 complement(1150388..1150984) 1 NC_011415.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 1150984 6999437 ECSE_1066 Escherichia coli SE11 TrpR binding protein WrbA YP_002292341.1 1150388 R 409438 CDS YP_002292342.1 209918258 6999438 1151327..1151530 1 NC_011415.1 hypothetical protein 1151530 6999438 ECSE_1067 Escherichia coli SE11 hypothetical protein YP_002292342.1 1151327 D 409438 CDS YP_002292343.1 209918259 6999439 complement(1151613..1152941) 1 NC_011415.1 putative transport protein 1152941 6999439 ECSE_1068 Escherichia coli SE11 putative transport protein YP_002292343.1 1151613 R 409438 CDS YP_002292344.1 209918260 6999440 complement(1152962..1153420) 1 NC_011415.1 hypothetical protein 1153420 6999440 ECSE_1069 Escherichia coli SE11 hypothetical protein YP_002292344.1 1152962 R 409438 CDS YP_002292345.1 209918261 6999441 complement(1153467..1154057) 1 NC_011415.1 hypothetical protein 1154057 6999441 ECSE_1070 Escherichia coli SE11 hypothetical protein YP_002292345.1 1153467 R 409438 CDS YP_002292346.1 209918262 6999442 complement(1154067..1154867) 1 NC_011415.1 putative hydrolase 1154867 6999442 ECSE_1071 Escherichia coli SE11 putative hydrolase YP_002292346.1 1154067 R 409438 CDS YP_002292347.1 209918263 6999443 complement(1154875..1155261) 1 NC_011415.1 hypothetical protein 1155261 6999443 ECSE_1072 Escherichia coli SE11 hypothetical protein YP_002292347.1 1154875 R 409438 CDS YP_002292348.1 209918264 6999444 complement(1155273..1155965) 1 NC_011415.1 hypothetical protein 1155965 6999444 ECSE_1073 Escherichia coli SE11 hypothetical protein YP_002292348.1 1155273 R 409438 CDS YP_002292349.1 209918265 6999445 complement(1155965..1157113) 1 NC_011415.1 hypothetical protein 1157113 6999445 ECSE_1074 Escherichia coli SE11 hypothetical protein YP_002292349.1 1155965 R 409438 CDS YP_002292350.1 209918266 6999446 1157344..1157982 1 NC_011415.1 putative transcriptional regulator 1157982 6999446 ECSE_1075 Escherichia coli SE11 putative transcriptional regulator YP_002292350.1 1157344 D 409438 CDS YP_002292351.1 209918267 6999447 complement(1158022..1161984) 1 NC_011415.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1161984 putA 6999447 putA Escherichia coli SE11 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_002292351.1 1158022 R 409438 CDS YP_002292352.1 209918268 6999448 complement(1162136..1162327) 1 NC_011415.1 hypothetical protein 1162327 6999448 ECSE_1077 Escherichia coli SE11 hypothetical protein YP_002292352.1 1162136 R 409438 CDS YP_002292353.1 209918269 6999449 1162407..1163915 1 NC_011415.1 proline transport protein 1163915 6999449 ECSE_1078 Escherichia coli SE11 proline transport protein YP_002292353.1 1162407 D 409438 CDS YP_002292354.1 209918270 6999450 complement(1163921..1164043) 1 NC_011415.1 hypothetical protein 1164043 6999450 ECSE_1079 Escherichia coli SE11 hypothetical protein YP_002292354.1 1163921 R 409438 CDS YP_002292355.1 209918271 6999451 1164198..1164323 1 NC_011415.1 hypothetical protein 1164323 6999451 ECSE_1080 Escherichia coli SE11 hypothetical protein YP_002292355.1 1164198 D 409438 CDS YP_002292356.1 209918272 6999452 1164581..1165411 1 NC_011415.1 putative cytochrome 1165411 6999452 ECSE_1081 Escherichia coli SE11 putative cytochrome YP_002292356.1 1164581 D 409438 CDS YP_002292357.1 209918273 6999453 1165469..1166596 1 NC_011415.1 hypothetical protein 1166596 6999453 ECSE_1082 Escherichia coli SE11 hypothetical protein YP_002292357.1 1165469 D 409438 CDS YP_002292358.1 209918274 6999454 1166602..1167873 1 NC_011415.1 hypothetical protein 1167873 6999454 ECSE_1083 Escherichia coli SE11 hypothetical protein YP_002292358.1 1166602 D 409438 CDS YP_002292359.1 209918275 6999455 complement(1167940..1168137) 1 NC_011415.1 hypothetical protein 1168137 6999455 ECSE_1084 Escherichia coli SE11 hypothetical protein YP_002292359.1 1167940 R 409438 CDS YP_002292360.1 209918276 6999456 1168357..1169280 1 NC_011415.1 hypothetical protein 1169280 6999456 ECSE_1085 Escherichia coli SE11 hypothetical protein YP_002292360.1 1168357 D 409438 CDS YP_002292361.1 209918277 6999457 complement(1169330..1169743) 1 NC_011415.1 in Yersinia this gene is involved in biofilm formation and hemin adsorption; in Escherichia coli it is involved in PGA biosynthesis and export; putative PGA biosynthesis protein 1169743 pgaD 6999457 pgaD Escherichia coli SE11 putative PGA biosynthesis protein YP_002292361.1 1169330 R 409438 CDS YP_002292362.1 209918278 6999458 complement(1169745..1171070) 1 NC_011415.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 1171070 6999458 ECSE_1087 Escherichia coli SE11 N-glycosyltransferase YP_002292362.1 1169745 R 409438 CDS YP_002292363.1 209918279 6999459 complement(1171063..1173081) 1 NC_011415.1 in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export; outer membrane N-deacetylase 1173081 pgaB 6999459 pgaB Escherichia coli SE11 outer membrane N-deacetylase YP_002292363.1 1171063 R 409438 CDS YP_002292364.1 209918280 6999460 complement(1173090..1175513) 1 NC_011415.1 outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia; outer membrane protein PgaA 1175513 pgaA 6999460 pgaA Escherichia coli SE11 outer membrane protein PgaA YP_002292364.1 1173090 R 409438 CDS YP_002292365.1 209918281 6999461 1176028..1177458 1 NC_011415.1 hypothetical protein 1177458 6999461 ECSE_1090 Escherichia coli SE11 hypothetical protein YP_002292365.1 1176028 D 409438 CDS YP_002292366.1 209918282 6999462 complement(1177499..1178365) 1 NC_011415.1 transposase 1178365 6999462 ECSE_1091 Escherichia coli SE11 transposase YP_002292366.1 1177499 R 409438 CDS YP_002292367.1 209918283 6999463 complement(1178494..1178670) 1 NC_011415.1 truncated transposase 1178670 6999463 ECSE_1092 Escherichia coli SE11 truncated transposase YP_002292367.1 1178494 R 409438 CDS YP_002292368.1 209918284 6999464 1178932..1179255 1 NC_011415.1 hypothetical protein 1179255 6999464 ECSE_1093 Escherichia coli SE11 hypothetical protein YP_002292368.1 1178932 D 409438 CDS YP_002292369.1 209918285 6999465 1179252..1180238 1 NC_011415.1 hypothetical protein 1180238 6999465 ECSE_1094 Escherichia coli SE11 hypothetical protein YP_002292369.1 1179252 D 409438 CDS YP_002292370.1 209918286 7003148 1180752..1181690 1 NC_011415.1 hypothetical protein 1181690 7003148 ECSE_1095 Escherichia coli SE11 hypothetical protein YP_002292370.1 1180752 D 409438 CDS YP_002292371.1 209918287 6999467 1181745..1182482 1 NC_011415.1 putative hydrolase 1182482 6999467 ECSE_1096 Escherichia coli SE11 putative hydrolase YP_002292371.1 1181745 D 409438 CDS YP_002292372.1 209918288 6999468 1182506..1183060 1 NC_011415.1 hypothetical protein 1183060 6999468 ECSE_1097 Escherichia coli SE11 hypothetical protein YP_002292372.1 1182506 D 409438 CDS YP_002292373.1 209918289 6999469 1183114..1183653 1 NC_011415.1 hypothetical protein 1183653 6999469 ECSE_1098 Escherichia coli SE11 hypothetical protein YP_002292373.1 1183114 D 409438 CDS YP_002292374.1 209918290 6999470 complement(1183717..1184550) 1 NC_011415.1 curli production assembly/transport component 1184550 6999470 ECSE_1099 Escherichia coli SE11 curli production assembly/transport component YP_002292374.1 1183717 R 409438 CDS YP_002292375.1 209918291 6999471 complement(1184577..1184993) 1 NC_011415.1 nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgF 1184993 6999471 ECSE_1100 Escherichia coli SE11 curli assembly protein CsgF YP_002292375.1 1184577 R 409438 CDS YP_002292376.1 209918292 6999472 complement(1185018..1185407) 1 NC_011415.1 chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation); part of the curli secretion and assembly protein complex; curli assembly protein CsgE 1185407 6999472 ECSE_1101 Escherichia coli SE11 curli assembly protein CsgE YP_002292376.1 1185018 R 409438 CDS YP_002292377.1 209918293 6999473 complement(1185412..1186062) 1 NC_011415.1 activates the csgBA and csgDEFG operons involved in biofilm formation; DNA-binding transcriptional regulator CsgD 1186062 6999473 ECSE_1102 Escherichia coli SE11 DNA-binding transcriptional regulator CsgD YP_002292377.1 1185412 R 409438 CDS YP_002292378.1 209918294 6999474 complement(1186474..1186713) 1 NC_011415.1 hypothetical protein 1186713 6999474 ECSE_1103 Escherichia coli SE11 hypothetical protein YP_002292378.1 1186474 R 409438 CDS YP_002292379.1 209918295 6999475 1186816..1187271 1 NC_011415.1 CsgB; functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface; curlin minor subunit 1187271 6999475 ECSE_1104 Escherichia coli SE11 curlin minor subunit YP_002292379.1 1186816 D 409438 CDS YP_002292380.1 209918296 6999476 1187312..1187767 1 NC_011415.1 cryptic curlin major subunit 1187767 6999476 ECSE_1105 Escherichia coli SE11 cryptic curlin major subunit YP_002292380.1 1187312 D 409438 CDS YP_002292381.1 209918297 6999477 1187826..1188158 1 NC_011415.1 involved in autoagglutination of curliated cells; not involved in production of curli fibers; putative autoagglutination protein 1188158 csgC 6999477 csgC Escherichia coli SE11 putative autoagglutination protein YP_002292381.1 1187826 D 409438 CDS YP_002292382.1 209918298 6999478 1188279..1188590 1 NC_011415.1 hypothetical protein 1188590 6999478 ECSE_1107 Escherichia coli SE11 hypothetical protein YP_002292382.1 1188279 D 409438 CDS YP_002292383.1 209918299 6999479 1188685..1189218 1 NC_011415.1 hypothetical protein 1189218 6999479 ECSE_1108 Escherichia coli SE11 hypothetical protein YP_002292383.1 1188685 D 409438 CDS YP_002292384.1 209918300 6999480 1189160..1190641 1 NC_011415.1 hypothetical protein 1190641 6999480 ECSE_1109 Escherichia coli SE11 hypothetical protein YP_002292384.1 1189160 D 409438 CDS YP_002292385.1 209918301 6999481 complement(1190649..1191806) 1 NC_011415.1 required for the transfer of succinyl residues to the glucan backbone; glucans biosynthesis protein 1191806 mdoC 6999481 mdoC Escherichia coli SE11 glucans biosynthesis protein YP_002292385.1 1190649 R 409438 CDS YP_002292386.1 209918302 6999482 complement(1191851..1191994) 1 NC_011415.1 hypothetical protein 1191994 6999482 ECSE_1111 Escherichia coli SE11 hypothetical protein YP_002292386.1 1191851 R 409438 CDS YP_002292387.1 209918303 6999483 1192200..1193735 1 NC_011415.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 1193735 mdoG 6999483 mdoG Escherichia coli SE11 glucan biosynthesis protein G YP_002292387.1 1192200 D 409438 CDS YP_002292388.1 209918304 6999484 1193728..1196271 1 NC_011415.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 1196271 6999484 ECSE_1113 Escherichia coli SE11 glucosyltransferase MdoH YP_002292388.1 1193728 D 409438 CDS YP_002292389.1 209918305 6999485 1196443..1196670 1 NC_011415.1 hypothetical protein 1196670 6999485 ECSE_1114 Escherichia coli SE11 hypothetical protein YP_002292389.1 1196443 D 409438 CDS YP_002292390.1 209918306 6999486 complement(1196671..1197048) 1 NC_011415.1 hypothetical protein 1197048 6999486 ECSE_1115 Escherichia coli SE11 hypothetical protein YP_002292390.1 1196671 R 409438 CDS YP_002292391.1 209918307 6999487 complement(1197128..1198354) 1 NC_011415.1 Confers resistance to fosfomycin and deoxycholate; drug efflux system protein MdtG 1198354 6999487 ECSE_1116 Escherichia coli SE11 drug efflux system protein MdtG YP_002292391.1 1197128 R 409438 CDS YP_002292392.1 209918308 6999488 complement(1198526..1199446) 1 NC_011415.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1199446 6999488 ECSE_1117 Escherichia coli SE11 lipid A biosynthesis lauroyl acyltransferase YP_002292392.1 1198526 R 409438 CDS YP_002292393.1 209918309 6999489 1199671..1200723 1 NC_011415.1 hypothetical protein 1200723 6999489 ECSE_1118 Escherichia coli SE11 hypothetical protein YP_002292393.1 1199671 D 409438 CDS YP_002292394.1 209918310 6999490 complement(1200765..1201340) 1 NC_011415.1 hypothetical protein 1201340 6999490 ECSE_1119 Escherichia coli SE11 hypothetical protein YP_002292394.1 1200765 R 409438 CDS YP_002292395.1 209918311 6999491 complement(1201344..1201910) 1 NC_011415.1 putative cytochrome 1201910 6999491 ECSE_1120 Escherichia coli SE11 putative cytochrome YP_002292395.1 1201344 R 409438 CDS YP_002292396.1 209918312 6999492 complement(1202171..1202311) 1 NC_011415.1 hypothetical protein 1202311 6999492 ECSE_1121 Escherichia coli SE11 hypothetical protein YP_002292396.1 1202171 R 409438 CDS YP_002292397.1 209918313 6999493 complement(1202332..1203450) 1 NC_011415.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids; N-methyltryptophan oxidase 1203450 solA 6999493 solA Escherichia coli SE11 N-methyltryptophan oxidase YP_002292397.1 1202332 R 409438 CDS YP_002292398.1 209918314 6999494 complement(1203565..1203822) 1 NC_011415.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing; biofilm formation regulatory protein BssS 1203822 bssS 6999494 bssS Escherichia coli SE11 biofilm formation regulatory protein BssS YP_002292398.1 1203565 R 409438 CDS YP_002292399.1 209918315 6999495 complement(1204109..1204354) 1 NC_011415.1 DNA damage-inducible protein I 1204354 6999495 ECSE_1124 Escherichia coli SE11 DNA damage-inducible protein I YP_002292399.1 1204109 R 409438 CDS YP_002292400.1 209918316 6999496 complement(1204428..1205474) 1 NC_011415.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1205474 6999496 ECSE_1125 Escherichia coli SE11 dihydroorotase YP_002292400.1 1204428 R 409438 CDS YP_002292401.1 209918317 6999497 complement(1205580..1206140) 1 NC_011415.1 hypothetical protein 1206140 6999497 ECSE_1126 Escherichia coli SE11 hypothetical protein YP_002292401.1 1205580 R 409438 CDS YP_002292402.1 209918318 6999498 complement(1206274..1206921) 1 NC_011415.1 cofactor involved in the reduction of disulfides; glutaredoxin 2 1206921 6999498 ECSE_1127 Escherichia coli SE11 glutaredoxin 2 YP_002292402.1 1206274 R 409438 CDS YP_002292403.1 209918319 6999499 complement(1206985..1208193) 1 NC_011415.1 Confers resistance to norfloxacin and enoxacin; multidrug resistance protein MdtH 1208193 6999499 ECSE_1128 Escherichia coli SE11 multidrug resistance protein MdtH YP_002292403.1 1206985 R 409438 CDS YP_002292404.1 209918320 6999500 1208429..1209013 1 NC_011415.1 ribosomal-protein-S5-alanine N-acetyltransferase 1209013 6999500 ECSE_1129 Escherichia coli SE11 ribosomal-protein-S5-alanine N-acetyltransferase YP_002292404.1 1208429 D 409438 CDS YP_002292405.1 209918321 6999501 1209024..1209671 1 NC_011415.1 hypothetical protein 1209671 6999501 ECSE_1130 Escherichia coli SE11 hypothetical protein YP_002292405.1 1209024 D 409438 CDS YP_002292406.1 209918322 6999502 1209673..1210596 1 NC_011415.1 putative oxidoreductase 1210596 6999502 ECSE_1131 Escherichia coli SE11 putative oxidoreductase YP_002292406.1 1209673 D 409438 CDS YP_002292407.1 209918323 6999503 1210706..1212241 1 NC_011415.1 hypothetical protein 1212241 6999503 ECSE_1132 Escherichia coli SE11 hypothetical protein YP_002292407.1 1210706 D 409438 CDS YP_002292408.1 209918324 6999504 complement(1212281..1212697) 1 NC_011415.1 flagella synthesis protein FlgN 1212697 6999504 ECSE_1133 Escherichia coli SE11 flagella synthesis protein FlgN YP_002292408.1 1212281 R 409438 CDS YP_002292409.1 209918325 6999505 complement(1212702..1212995) 1 NC_011415.1 regulates the flagellar specific sigma28 transcription factor; anti-sigma28 factor FlgM 1212995 6999505 ECSE_1134 Escherichia coli SE11 anti-sigma28 factor FlgM YP_002292409.1 1212702 R 409438 CDS YP_002292410.1 209918326 6999506 complement(1213071..1213730) 1 NC_011415.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1213730 flgA 6999506 flgA Escherichia coli SE11 flagellar basal body P-ring biosynthesis protein FlgA YP_002292410.1 1213071 R 409438 CDS YP_002292411.1 209918327 6999507 1213885..1214301 1 NC_011415.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1214301 flgB 6999507 flgB Escherichia coli SE11 flagellar basal body rod protein FlgB YP_002292411.1 1213885 D 409438 CDS YP_002292412.1 209918328 6999508 1214305..1214709 1 NC_011415.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1214709 flgC 6999508 flgC Escherichia coli SE11 flagellar basal body rod protein FlgC YP_002292412.1 1214305 D 409438 CDS YP_002292413.1 209918329 6999509 1214721..1215416 1 NC_011415.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 1215416 flgD 6999509 flgD Escherichia coli SE11 flagellar basal body rod modification protein YP_002292413.1 1214721 D 409438 CDS YP_002292414.1 209918330 6999510 1215441..1216646 1 NC_011415.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 1216646 flgE 6999510 flgE Escherichia coli SE11 flagellar hook protein FlgE YP_002292414.1 1215441 D 409438 CDS YP_002292415.1 209918331 6999511 1216666..1217421 1 NC_011415.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 1217421 flgF 6999511 flgF Escherichia coli SE11 flagellar basal body rod protein FlgF YP_002292415.1 1216666 D 409438 CDS YP_002292416.1 209918332 6999512 1217559..1218341 1 NC_011415.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1218341 flgG 6999512 flgG Escherichia coli SE11 flagellar basal body rod protein FlgG YP_002292416.1 1217559 D 409438 CDS YP_002292417.1 209918333 6999513 1218394..1219092 1 NC_011415.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 1219092 flgH 6999513 flgH Escherichia coli SE11 flagellar basal body L-ring protein YP_002292417.1 1218394 D 409438 CDS YP_002292418.1 209918334 6999514 1219101..1220201 1 NC_011415.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 1220201 flgI 6999514 flgI Escherichia coli SE11 flagellar basal body P-ring protein YP_002292418.1 1219101 D 409438 CDS YP_002292419.1 209918335 6999515 1220201..1221142 1 NC_011415.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 1221142 flgJ 6999515 flgJ Escherichia coli SE11 flagellar rod assembly protein/muramidase FlgJ YP_002292419.1 1220201 D 409438 CDS YP_002292420.1 209918336 6999516 1221208..1222851 1 NC_011415.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1222851 flgK 6999516 flgK Escherichia coli SE11 flagellar hook-associated protein FlgK YP_002292420.1 1221208 D 409438 CDS YP_002292421.1 209918337 6999517 1222863..1223816 1 NC_011415.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes; flagellar hook-associated protein FlgL 1223816 flgL 6999517 flgL Escherichia coli SE11 flagellar hook-associated protein FlgL YP_002292421.1 1222863 D 409438 CDS YP_002292422.1 209918338 6999518 complement(1224013..1227198) 1 NC_011415.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase; ribonuclease E 1227198 rne 6999518 rne Escherichia coli SE11 ribonuclease E YP_002292422.1 1224013 R 409438 CDS YP_002292423.1 209918339 6999519 1227279..1227653 1 NC_011415.1 hypothetical protein 1227653 6999519 ECSE_1148 Escherichia coli SE11 hypothetical protein YP_002292423.1 1227279 D 409438 CDS YP_002292424.1 209918340 6999520 1227771..1228730 1 NC_011415.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1228730 6999520 ECSE_1149 Escherichia coli SE11 23S rRNA pseudouridylate synthase C YP_002292424.1 1227771 D 409438 CDS YP_002292425.1 209918341 6999521 complement(1228842..1229426) 1 NC_011415.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1229426 6999521 ECSE_1150 Escherichia coli SE11 Maf-like protein YP_002292425.1 1228842 R 409438 CDS YP_002292426.1 209918342 6999522 complement(1229438..1229560) 1 NC_011415.1 hypothetical protein 1229560 6999522 ECSE_1151 Escherichia coli SE11 hypothetical protein YP_002292426.1 1229438 R 409438 CDS YP_002292427.1 209918343 6999523 1229625..1230146 1 NC_011415.1 hypothetical protein 1230146 6999523 ECSE_1152 Escherichia coli SE11 hypothetical protein YP_002292427.1 1229625 D 409438 CDS YP_002292428.1 209918344 6999524 1230198..1230371 1 NC_011415.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1230371 rpmF 6999524 rpmF Escherichia coli SE11 50S ribosomal protein L32 YP_002292428.1 1230198 D 409438 CDS YP_002292429.1 209918345 6999525 1230482..1231522 1 NC_011415.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1231522 6999525 ECSE_1154 Escherichia coli SE11 putative glycerol-3-phosphate acyltransferase PlsX YP_002292429.1 1230482 D 409438 CDS YP_002292430.1 209918346 6999526 1231590..1232543 1 NC_011415.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1232543 6999526 ECSE_1155 Escherichia coli SE11 3-oxoacyl-(acyl carrier protein) synthase III YP_002292430.1 1231590 D 409438 CDS YP_002292431.1 209918347 6999527 1232559..1233488 1 NC_011415.1 malonyl-CoA-[acyl-carrier-protein] transacylase 1233488 6999527 ECSE_1156 Escherichia coli SE11 malonyl-CoA-[acyl-carrier-protein] transacylase YP_002292431.1 1232559 D 409438 CDS YP_002292432.1 209918348 6999528 1233501..1234235 1 NC_011415.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1234235 fabG 6999528 fabG Escherichia coli SE11 3-ketoacyl-(acyl-carrier-protein) reductase YP_002292432.1 1233501 D 409438 CDS YP_002292433.1 209918349 6999529 1234446..1234682 1 NC_011415.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1234682 acpP 6999529 acpP Escherichia coli SE11 acyl carrier protein YP_002292433.1 1234446 D 409438 CDS YP_002292434.1 209918350 6999530 1234770..1236011 1 NC_011415.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1236011 6999530 ECSE_1159 Escherichia coli SE11 3-oxoacyl-(acyl carrier protein) synthase II YP_002292434.1 1234770 D 409438 CDS YP_002292435.1 209918351 6999531 1236131..1236940 1 NC_011415.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1236940 6999531 ECSE_1160 Escherichia coli SE11 4-amino-4-deoxychorismate lyase YP_002292435.1 1236131 D 409438 CDS YP_002292436.1 209918352 6999532 1236943..1237965 1 NC_011415.1 hypothetical protein 1237965 6999532 ECSE_1161 Escherichia coli SE11 hypothetical protein YP_002292436.1 1236943 D 409438 CDS YP_002292437.1 209918353 6999533 1237955..1238596 1 NC_011415.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1238596 tmk 6999533 tmk Escherichia coli SE11 thymidylate kinase YP_002292437.1 1237955 D 409438 CDS YP_002292438.1 209918354 6999534 1238593..1239597 1 NC_011415.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1239597 6999534 ECSE_1163 Escherichia coli SE11 DNA polymerase III subunit delta' YP_002292438.1 1238593 D 409438 CDS YP_002292439.1 209918355 6999535 1239608..1240405 1 NC_011415.1 putative metallodependent hydrolase 1240405 6999535 ECSE_1164 Escherichia coli SE11 putative metallodependent hydrolase YP_002292439.1 1239608 D 409438 CDS YP_002292440.1 209918356 6999536 1240700..1242133 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 1242133 6999536 ECSE_1165 Escherichia coli SE11 PTS system glucose-specific transporter subunits IIBC YP_002292440.1 1240700 D 409438 CDS YP_002292441.1 209918357 6999537 complement(1242193..1244382) 1 NC_011415.1 ferric-rhodotorulic acid outer membrane transporter 1244382 6999537 ECSE_1166 Escherichia coli SE11 ferric-rhodotorulic acid outer membrane transporter YP_002292441.1 1242193 R 409438 CDS YP_002292442.1 209918358 6999538 complement(1244415..1244585) 1 NC_011415.1 hypothetical protein 1244585 6999538 ECSE_1167 Escherichia coli SE11 hypothetical protein YP_002292442.1 1244415 R 409438 CDS YP_002292443.1 209918359 6999539 1244716..1245075 1 NC_011415.1 purine nucleoside phosphoramidase 1245075 6999539 ECSE_1168 Escherichia coli SE11 purine nucleoside phosphoramidase YP_002292443.1 1244716 D 409438 CDS YP_002292444.1 209918360 6999540 1245078..1245455 1 NC_011415.1 hypothetical protein 1245455 6999540 ECSE_1169 Escherichia coli SE11 hypothetical protein YP_002292444.1 1245078 D 409438 CDS YP_002292445.1 209918361 6999541 1245469..1246110 1 NC_011415.1 hypothetical protein 1246110 6999541 ECSE_1170 Escherichia coli SE11 hypothetical protein YP_002292445.1 1245469 D 409438 CDS YP_002292446.1 209918362 6999542 1246091..1246915 1 NC_011415.1 catalyzes the phosphorylation of thiamine to thiamine phosphate; thiamine kinase 1246915 thiK 6999542 thiK Escherichia coli SE11 thiamine kinase YP_002292446.1 1246091 D 409438 CDS YP_002292447.1 209918363 6999543 1246926..1247951 1 NC_011415.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1247951 6999543 ECSE_1172 Escherichia coli SE11 beta-hexosaminidase YP_002292447.1 1246926 D 409438 CDS YP_002292448.1 209918364 6999544 1247974..1248516 1 NC_011415.1 hypothetical protein 1248516 6999544 ECSE_1173 Escherichia coli SE11 hypothetical protein YP_002292448.1 1247974 D 409438 CDS YP_002292449.1 209918365 6999545 1248924..1250228 1 NC_011415.1 NADH dehydrogenase 1250228 6999545 ECSE_1174 Escherichia coli SE11 NADH dehydrogenase YP_002292449.1 1248924 D 409438 CDS YP_002292450.1 209918366 6999546 1250438..1250977 1 NC_011415.1 hypothetical protein 1250977 6999546 ECSE_1175 Escherichia coli SE11 hypothetical protein YP_002292450.1 1250438 D 409438 CDS YP_002292451.1 209918367 6999547 complement(1251039..1251749) 1 NC_011415.1 hypothetical protein 1251749 6999547 ECSE_1176 Escherichia coli SE11 hypothetical protein YP_002292451.1 1251039 R 409438 CDS YP_002292452.1 209918368 6999548 1251911..1252168 1 NC_011415.1 hypothetical protein 1252168 6999548 ECSE_1177 Escherichia coli SE11 hypothetical protein YP_002292452.1 1251911 D 409438 CDS YP_002292453.1 209918369 6999549 complement(1252251..1253216) 1 NC_011415.1 hypothetical protein 1253216 6999549 ECSE_1178 Escherichia coli SE11 hypothetical protein YP_002292453.1 1252251 R 409438 CDS YP_002292454.1 209918370 6999550 complement(1253357..1256803) 1 NC_011415.1 transcription-repair coupling factor 1256803 6999550 ECSE_1179 Escherichia coli SE11 transcription-repair coupling factor YP_002292454.1 1253357 R 409438 CDS YP_002292455.1 209918371 6999551 complement(1256931..1258004) 1 NC_011415.1 hypothetical protein 1258004 6999551 ECSE_1180 Escherichia coli SE11 hypothetical protein YP_002292455.1 1256931 R 409438 CDS YP_002292456.1 209918372 6999552 1258266..1259465 1 NC_011415.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 1259465 6999552 ECSE_1181 Escherichia coli SE11 outer membrane-specific lipoprotein transporter subunit LolC YP_002292456.1 1258266 D 409438 CDS YP_002292457.1 209918373 6999553 1259473..1260159 1 NC_011415.1 outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone; lipoprotein transporter ATP-binding subunit 1260159 lolD 6999553 lolD Escherichia coli SE11 lipoprotein transporter ATP-binding subunit YP_002292457.1 1259473 D 409438 CDS YP_002292458.1 209918374 6999554 1260159..1261403 1 NC_011415.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1261403 6999554 ECSE_1183 Escherichia coli SE11 outer membrane-specific lipoprotein transporter subunit LolE YP_002292458.1 1260159 D 409438 CDS YP_002292459.1 209918375 6999555 1261432..1262343 1 NC_011415.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1262343 6999555 ECSE_1184 Escherichia coli SE11 N-acetyl-D-glucosamine kinase YP_002292459.1 1261432 D 409438 CDS YP_002292460.1 209918376 6999556 1262359..1263180 1 NC_011415.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1263180 6999556 ECSE_1185 Escherichia coli SE11 NAD-dependent deacetylase YP_002292460.1 1262359 D 409438 CDS YP_002292461.1 209918377 6999557 complement(1263319..1263846) 1 NC_011415.1 hypothetical protein 1263846 6999557 ECSE_1186 Escherichia coli SE11 hypothetical protein YP_002292461.1 1263319 R 409438 CDS YP_002292462.1 209918378 6999558 complement(1263843..1264103) 1 NC_011415.1 hypothetical protein 1264103 6999558 ECSE_1187 Escherichia coli SE11 hypothetical protein YP_002292462.1 1263843 R 409438 CDS YP_002292463.1 209918379 6999559 complement(1264100..1264570) 1 NC_011415.1 hypothetical protein 1264570 6999559 ECSE_1188 Escherichia coli SE11 hypothetical protein YP_002292463.1 1264100 R 409438 CDS YP_002292464.1 209918380 6999560 complement(1264619..1265665) 1 NC_011415.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate; spermidine/putrescine ABC transporter periplasmic substrate-binding protein 1265665 potD 6999560 potD Escherichia coli SE11 spermidine/putrescine ABC transporter periplasmic substrate-binding protein YP_002292464.1 1264619 R 409438 CDS YP_002292465.1 209918381 6999561 complement(1265662..1266456) 1 NC_011415.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1266456 potC 6999561 potC Escherichia coli SE11 spermidine/putrescine ABC transporter membrane protein YP_002292465.1 1265662 R 409438 CDS YP_002292466.1 209918382 6999562 complement(1266453..1267310) 1 NC_011415.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1267310 potB 6999562 potB Escherichia coli SE11 spermidine/putrescine ABC transporter membrane protein YP_002292466.1 1266453 R 409438 CDS YP_002292467.1 209918383 6999563 complement(1267294..1268430) 1 NC_011415.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 1268430 potA 6999563 potA Escherichia coli SE11 putrescine/spermidine ABC transporter ATPase protein YP_002292467.1 1267294 R 409438 CDS YP_002292468.1 209918384 6999564 1268680..1269909 1 NC_011415.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1269909 6999564 ECSE_1193 Escherichia coli SE11 peptidase T YP_002292468.1 1268680 D 409438 CDS YP_002292469.1 209918385 6999565 complement(1270055..1271176) 1 NC_011415.1 hypothetical protein 1271176 6999565 ECSE_1194 Escherichia coli SE11 hypothetical protein YP_002292469.1 1270055 R 409438 CDS YP_002292470.1 209918386 6999566 complement(1271252..1272712) 1 NC_011415.1 sensor protein PhoQ 1272712 6999566 ECSE_1195 Escherichia coli SE11 sensor protein PhoQ YP_002292470.1 1271252 R 409438 CDS YP_002292471.1 209918387 6999567 complement(1272712..1273383) 1 NC_011415.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; DNA-binding transcriptional regulator PhoP 1273383 6999567 ECSE_1196 Escherichia coli SE11 DNA-binding transcriptional regulator PhoP YP_002292471.1 1272712 R 409438 CDS YP_002292472.1 209918388 6999568 complement(1273551..1274921) 1 NC_011415.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1274921 6999568 ECSE_1197 Escherichia coli SE11 adenylosuccinate lyase YP_002292472.1 1273551 R 409438 CDS YP_002292473.1 209918389 6999569 complement(1274925..1275566) 1 NC_011415.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1275566 6999569 ECSE_1198 Escherichia coli SE11 hypothetical protein YP_002292473.1 1274925 R 409438 CDS YP_002292474.1 209918390 6999570 complement(1275602..1276708) 1 NC_011415.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1276708 mnmA 6999570 mnmA Escherichia coli SE11 tRNA-specific 2-thiouridylase MnmA YP_002292474.1 1275602 R 409438 CDS YP_002292475.1 209918391 6999571 complement(1276762..1277223) 1 NC_011415.1 hypothetical protein 1277223 6999571 ECSE_1200 Escherichia coli SE11 hypothetical protein YP_002292475.1 1276762 R 409438 CDS YP_002292476.1 209918392 6999572 complement(1277233..1277886) 1 NC_011415.1 catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase E 1277886 6999572 ECSE_1201 Escherichia coli SE11 23S rRNA pseudouridine synthase E YP_002292476.1 1277233 R 409438 CDS YP_002292477.1 209918393 6999573 1278058..1279308 1 NC_011415.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1279308 6999573 ECSE_1202 Escherichia coli SE11 isocitrate dehydrogenase YP_002292477.1 1278058 D 409438 CDS YP_002292478.1 209918394 6999574 complement(1279411..1279734) 1 NC_011415.1 hypothetical protein 1279734 6999574 ECSE_1203 Escherichia coli SE11 hypothetical protein YP_002292478.1 1279411 R 409438 CDS YP_002292479.1 209918395 6999575 complement(1280430..1280834) 1 NC_011415.1 hypothetical protein 1280834 6999575 ECSE_1204 Escherichia coli SE11 hypothetical protein YP_002292479.1 1280430 R 409438 CDS YP_002292480.1 209918396 6999576 complement(1281055..1281786) 1 NC_011415.1 putative transcriptional regulator 1281786 6999576 ECSE_1205 Escherichia coli SE11 putative transcriptional regulator YP_002292480.1 1281055 R 409438 CDS YP_002292481.1 209918397 6999577 complement(1281991..1283280) 1 NC_011415.1 hypothetical protein 1283280 6999577 ECSE_1206 Escherichia coli SE11 hypothetical protein YP_002292481.1 1281991 R 409438 CDS YP_002292482.1 209918398 6999578 1283516..1283764 1 NC_011415.1 hypothetical protein 1283764 6999578 ECSE_1207 Escherichia coli SE11 hypothetical protein YP_002292482.1 1283516 D 409438 CDS YP_002292483.1 209918399 6999579 1283794..1284066 1 NC_011415.1 hypothetical protein 1284066 6999579 ECSE_1208 Escherichia coli SE11 hypothetical protein YP_002292483.1 1283794 D 409438 CDS YP_002292484.1 209918400 6999580 1284095..1284361 1 NC_011415.1 hypothetical protein 1284361 6999580 ECSE_1209 Escherichia coli SE11 hypothetical protein YP_002292484.1 1284095 D 409438 CDS YP_002292485.1 209918401 6999581 1284474..1284722 1 NC_011415.1 hypothetical protein 1284722 6999581 ECSE_1210 Escherichia coli SE11 hypothetical protein YP_002292485.1 1284474 D 409438 CDS YP_002292486.1 209918402 6999582 1285054..1286577 1 NC_011415.1 hypothetical protein 1286577 6999582 ECSE_1211 Escherichia coli SE11 hypothetical protein YP_002292486.1 1285054 D 409438 CDS YP_002292487.1 209918403 6999583 1286673..1286927 1 NC_011415.1 hypothetical protein 1286927 6999583 ECSE_1212 Escherichia coli SE11 hypothetical protein YP_002292487.1 1286673 D 409438 CDS YP_002292488.1 209918404 6999584 1287020..1287163 1 NC_011415.1 hypothetical protein 1287163 6999584 ECSE_1213 Escherichia coli SE11 hypothetical protein YP_002292488.1 1287020 D 409438 CDS YP_002292489.1 209918405 6999585 1287327..1287536 1 NC_011415.1 hypothetical protein 1287536 6999585 ECSE_1214 Escherichia coli SE11 hypothetical protein YP_002292489.1 1287327 D 409438 CDS YP_002292490.1 209918406 6999586 1287653..1289974 1 NC_011415.1 putative autotransporter 1289974 6999586 ECSE_1215 Escherichia coli SE11 putative autotransporter YP_002292490.1 1287653 D 409438 CDS YP_002292491.1 209918407 6999587 complement(1290031..1290366) 1 NC_011415.1 hypothetical protein 1290366 6999587 ECSE_1216 Escherichia coli SE11 hypothetical protein YP_002292491.1 1290031 R 409438 CDS YP_002292492.1 209918408 6999588 complement(1290370..1290714) 1 NC_011415.1 hypothetical protein 1290714 6999588 ECSE_1217 Escherichia coli SE11 hypothetical protein YP_002292492.1 1290370 R 409438 CDS YP_002292493.1 209918409 6999589 complement(1290716..1290889) 1 NC_011415.1 hypothetical protein 1290889 6999589 ECSE_1218 Escherichia coli SE11 hypothetical protein YP_002292493.1 1290716 R 409438 CDS YP_002292494.1 209918410 6999590 1291191..1291634 1 NC_011415.1 putative autotransporter 1291634 6999590 ECSE_1219 Escherichia coli SE11 putative autotransporter YP_002292494.1 1291191 D 409438 CDS YP_002292495.1 209918411 6999591 complement(1292006..1292272) 1 NC_011415.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1292272 minE 6999591 minE Escherichia coli SE11 cell division topological specificity factor MinE YP_002292495.1 1292006 R 409438 CDS YP_002292496.1 209918412 6999592 complement(1292276..1293088) 1 NC_011415.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; cell division inhibitor MinD 1293088 6999592 ECSE_1221 Escherichia coli SE11 cell division inhibitor MinD YP_002292496.1 1292276 R 409438 CDS YP_002292497.1 209918413 6999593 complement(1293112..1293807) 1 NC_011415.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1293807 minC 6999593 minC Escherichia coli SE11 septum formation inhibitor YP_002292497.1 1293112 R 409438 CDS YP_002292498.1 209918414 6999594 1293947..1294174 1 NC_011415.1 hypothetical protein 1294174 6999594 ECSE_1223 Escherichia coli SE11 hypothetical protein YP_002292498.1 1293947 D 409438 CDS YP_002292499.1 209918415 6999595 1294327..1294695 1 NC_011415.1 hypothetical protein 1294695 6999595 ECSE_1224 Escherichia coli SE11 hypothetical protein YP_002292499.1 1294327 D 409438 CDS YP_002292500.1 209918416 6999596 complement(1294815..1295216) 1 NC_011415.1 hypothetical protein 1295216 6999596 ECSE_1225 Escherichia coli SE11 hypothetical protein YP_002292500.1 1294815 R 409438 CDS YP_002292501.1 209918417 6999597 1295424..1295750 1 NC_011415.1 hypothetical protein 1295750 6999597 ECSE_1226 Escherichia coli SE11 hypothetical protein YP_002292501.1 1295424 D 409438 CDS YP_002292502.1 209918418 6999598 1295822..1296481 1 NC_011415.1 hypothetical protein 1296481 6999598 ECSE_1227 Escherichia coli SE11 hypothetical protein YP_002292502.1 1295822 D 409438 CDS YP_002292503.1 209918419 6999599 1296543..1297019 1 NC_011415.1 hypothetical protein 1297019 6999599 ECSE_1228 Escherichia coli SE11 hypothetical protein YP_002292503.1 1296543 D 409438 CDS YP_002292504.1 209918420 6999600 complement(1297226..1297507) 1 NC_011415.1 Acts by forming a pore-like structure upon contact with mammalian cells; hemolysin E 1297507 hlyE 6999600 hlyE Escherichia coli SE11 hemolysin E YP_002292504.1 1297226 R 409438 CDS YP_002292505.1 209918421 6999601 complement(1297627..1298136) 1 NC_011415.1 Acts by forming a pore-like structure upon contact with mammalian cells; hemolysin E 1298136 hlyE 6999601 hlyE Escherichia coli SE11 hemolysin E YP_002292505.1 1297627 R 409438 CDS YP_002292506.1 209918422 6999602 1298509..1298928 1 NC_011415.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuD 1298928 6999602 ECSE_1231 Escherichia coli SE11 DNA polymerase V subunit UmuD YP_002292506.1 1298509 D 409438 CDS YP_002292507.1 209918423 6999603 1298928..1300196 1 NC_011415.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 1300196 umuC 6999603 umuC Escherichia coli SE11 DNA polymerase V subunit UmuC YP_002292507.1 1298928 D 409438 CDS YP_002292508.1 209918424 6999604 complement(1300242..1300772) 1 NC_011415.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 1300772 6999604 ECSE_1233 Escherichia coli SE11 disulfide bond formation protein B YP_002292508.1 1300242 R 409438 CDS YP_002292509.1 209918425 6999605 complement(1300918..1302459) 1 NC_011415.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1302459 nhaB 6999605 nhaB Escherichia coli SE11 sodium/proton antiporter YP_002292509.1 1300918 R 409438 CDS YP_002292510.1 209918426 6999606 1302681..1303400 1 NC_011415.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1303400 6999606 ECSE_1235 Escherichia coli SE11 fatty acid metabolism regulator YP_002292510.1 1302681 D 409438 CDS YP_002292511.1 209918427 6999607 complement(1303452..1304984) 1 NC_011415.1 SpoVR family protein 1304984 6999607 ECSE_1236 Escherichia coli SE11 SpoVR family protein YP_002292511.1 1303452 R 409438 CDS YP_002292512.1 209918428 6999608 1305314..1306612 1 NC_011415.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 1306612 6999608 ECSE_1237 Escherichia coli SE11 D-amino acid dehydrogenase small subunit YP_002292512.1 1305314 D 409438 CDS YP_002292513.1 209918429 6999609 1306622..1307692 1 NC_011415.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 1307692 dadX 6999609 dadX Escherichia coli SE11 alanine racemase YP_002292513.1 1306622 D 409438 CDS YP_002292514.1 209918430 6999610 complement(1308078..1309688) 1 NC_011415.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 1309688 6999610 ECSE_1239 Escherichia coli SE11 potassium/proton antiporter YP_002292514.1 1308078 R 409438 CDS YP_002292515.1 209918431 6999611 complement(1309909..1310823) 1 NC_011415.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine; L,D-carboxypeptidase A 1310823 ldcA 6999611 ldcA Escherichia coli SE11 L,D-carboxypeptidase A YP_002292515.1 1309909 R 409438 CDS YP_002292516.1 209918432 6999613 1310809..1311534 1 NC_011415.1 murein transglycosylase E 1311534 6999613 ECSE_1240 Escherichia coli SE11 murein transglycosylase E YP_002292516.1 1310809 D 409438 CDS YP_002292517.1 209918433 6999612 complement(1311536..1312270) 1 NC_011415.1 hypothetical protein 1312270 6999612 ECSE_1242 Escherichia coli SE11 hypothetical protein YP_002292517.1 1311536 R 409438 CDS YP_002292518.1 209918434 6999614 1312471..1312725 1 NC_011415.1 hypothetical protein 1312725 6999614 ECSE_1243 Escherichia coli SE11 hypothetical protein YP_002292518.1 1312471 D 409438 CDS YP_002292519.1 209918435 6999615 1312903..1313343 1 NC_011415.1 hypothetical protein 1313343 6999615 ECSE_1244 Escherichia coli SE11 hypothetical protein YP_002292519.1 1312903 D 409438 CDS YP_002292520.1 209918436 6999616 complement(1313422..1315119) 1 NC_011415.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell; trehalase 1315119 treA 6999616 treA Escherichia coli SE11 trehalase YP_002292520.1 1313422 R 409438 CDS YP_002292521.1 209918437 6999617 1315133..1315279 1 NC_011415.1 hypothetical protein 1315279 6999617 ECSE_1246 Escherichia coli SE11 hypothetical protein YP_002292521.1 1315133 D 409438 CDS YP_002292522.1 209918438 6999618 complement(1315439..1316857) 1 NC_011415.1 phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL; dihydroxyacetone kinase subunit M 1316857 6999618 ECSE_1247 Escherichia coli SE11 dihydroxyacetone kinase subunit M YP_002292522.1 1315439 R 409438 CDS YP_002292523.1 209918439 6999619 complement(1316868..1317500) 1 NC_011415.1 with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone; dihydroxyacetone kinase subunit DhaL 1317500 6999619 ECSE_1248 Escherichia coli SE11 dihydroxyacetone kinase subunit DhaL YP_002292523.1 1316868 R 409438 CDS YP_002292524.1 209918440 6999620 complement(1317511..1318581) 1 NC_011415.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1318581 6999620 ECSE_1249 Escherichia coli SE11 dihydroxyacetone kinase subunit DhaK YP_002292524.1 1317511 R 409438 CDS YP_002292525.1 209918441 6999621 1318800..1320728 1 NC_011415.1 Positively regulates the dhaKLM operon from a sigma-70 promoter; DNA-binding transcriptional regulator DhaR 1320728 6999621 ECSE_1250 Escherichia coli SE11 DNA-binding transcriptional regulator DhaR YP_002292525.1 1318800 D 409438 CDS YP_002292526.1 209918442 6999622 complement(1320828..1323713) 1 NC_011415.1 putative autotransporter 1323713 6999622 ECSE_1251 Escherichia coli SE11 putative autotransporter YP_002292526.1 1320828 R 409438 CDS YP_002292527.1 209918443 6999623 1324058..1324261 1 NC_011415.1 hypothetical protein 1324261 6999623 ECSE_1252 Escherichia coli SE11 hypothetical protein YP_002292527.1 1324058 D 409438 CDS YP_002292528.1 209918444 6999624 complement(1324554..1325645) 1 NC_011415.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1325645 6999624 ECSE_1253 Escherichia coli SE11 GTP-dependent nucleic acid-binding protein EngD YP_002292528.1 1324554 R 409438 CDS YP_002292529.1 209918445 6999625 complement(1325762..1326346) 1 NC_011415.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1326346 6999625 ECSE_1254 Escherichia coli SE11 peptidyl-tRNA hydrolase YP_002292529.1 1325762 R 409438 CDS YP_002292530.1 209918446 6999626 1326624..1326902 1 NC_011415.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function; hypothetical protein 1326902 6999626 ECSE_1255 Escherichia coli SE11 hypothetical protein YP_002292530.1 1326624 D 409438 CDS YP_002292531.1 209918447 6999627 complement(1326957..1328609) 1 NC_011415.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1328609 6999627 ECSE_1256 Escherichia coli SE11 putative sulfate transporter YchM YP_002292531.1 1326957 R 409438 CDS YP_002292532.1 209918448 6999628 complement(1328761..1329708) 1 NC_011415.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1329708 6999628 ECSE_1257 Escherichia coli SE11 ribose-phosphate pyrophosphokinase YP_002292532.1 1328761 R 409438 CDS YP_002292533.1 209918449 6999629 complement(1329859..1330710) 1 NC_011415.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1330710 ipk 6999629 ipk Escherichia coli SE11 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002292533.1 1329859 R 409438 CDS YP_002292534.1 209918450 6999630 complement(1330710..1331333) 1 NC_011415.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1331333 lolB 6999630 lolB Escherichia coli SE11 outer membrane lipoprotein LolB YP_002292534.1 1330710 R 409438 CDS YP_002292535.1 209918451 6999631 1331547..1332803 1 NC_011415.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1332803 hemA 6999631 hemA Escherichia coli SE11 glutamyl-tRNA reductase YP_002292535.1 1331547 D 409438 CDS YP_002292536.1 209918452 6999632 1332845..1333927 1 NC_011415.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1333927 prfA 6999632 prfA Escherichia coli SE11 peptide chain release factor 1 YP_002292536.1 1332845 D 409438 CDS YP_002292537.1 209918453 6999633 1333927..1334760 1 NC_011415.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1334760 6999633 ECSE_1262 Escherichia coli SE11 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002292537.1 1333927 D 409438 CDS YP_002292538.1 209918454 6999634 1334757..1335149 1 NC_011415.1 putative transcriptional regulator 1335149 6999634 ECSE_1263 Escherichia coli SE11 putative transcriptional regulator YP_002292538.1 1334757 D 409438 CDS YP_002292539.1 209918455 6999635 1335153..1335962 1 NC_011415.1 putative transcriptional regulator 1335962 6999635 ECSE_1264 Escherichia coli SE11 putative transcriptional regulator YP_002292539.1 1335153 D 409438 CDS YP_002292540.1 209918456 6999636 1335998..1336852 1 NC_011415.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1336852 6999636 ECSE_1265 Escherichia coli SE11 2-dehydro-3-deoxyphosphooctonate aldolase YP_002292540.1 1335998 D 409438 CDS YP_002292541.1 209918457 6999637 complement(1337001..1337135) 1 NC_011415.1 hypothetical protein 1337135 6999637 ECSE_1266 Escherichia coli SE11 hypothetical protein YP_002292541.1 1337001 R 409438 CDS YP_002292542.1 209918458 6999638 complement(1337536..1337667) 1 NC_011415.1 hypothetical protein 1337667 6999638 ECSE_1267 Escherichia coli SE11 hypothetical protein YP_002292542.1 1337536 R 409438 CDS YP_002292543.1 209918459 6999639 complement(1338072..1338206) 1 NC_011415.1 hypothetical protein 1338206 6999639 ECSE_1268 Escherichia coli SE11 hypothetical protein YP_002292543.1 1338072 R 409438 CDS YP_002292544.1 209918460 6999640 complement(1338584..1339684) 1 NC_011415.1 calcium/sodium:proton antiporter 1339684 6999640 ECSE_1269 Escherichia coli SE11 calcium/sodium:proton antiporter YP_002292544.1 1338584 R 409438 CDS YP_002292545.1 209918461 6999641 1339954..1340184 1 NC_011415.1 in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions; cation transport regulator 1340184 chaB 6999641 chaB Escherichia coli SE11 cation transport regulator YP_002292545.1 1339954 D 409438 CDS YP_002292546.1 209918462 6999642 1340321..1341037 1 NC_011415.1 cation transport regulator 1341037 6999642 ECSE_1271 Escherichia coli SE11 cation transport regulator YP_002292546.1 1340321 D 409438 CDS YP_002292547.1 209918463 6999643 complement(1341081..1341434) 1 NC_011415.1 hypothetical protein 1341434 6999643 ECSE_1272 Escherichia coli SE11 hypothetical protein YP_002292547.1 1341081 R 409438 CDS YP_002292548.1 209918464 6999644 1341760..1343013 1 NC_011415.1 hypothetical protein 1343013 6999644 ECSE_1273 Escherichia coli SE11 hypothetical protein YP_002292548.1 1341760 D 409438 CDS YP_002292549.1 209918465 6999645 complement(1343014..1343664) 1 NC_011415.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase; transcriptional regulator NarL 1343664 6999645 ECSE_1274 Escherichia coli SE11 transcriptional regulator NarL YP_002292549.1 1343014 R 409438 CDS YP_002292550.1 209918466 6999646 complement(1343657..1345453) 1 NC_011415.1 nitrate/nitrite sensor protein NarX 1345453 6999646 ECSE_1275 Escherichia coli SE11 nitrate/nitrite sensor protein NarX YP_002292550.1 1343657 R 409438 CDS YP_002292551.1 209918467 6999647 1345479..1345697 1 NC_011415.1 hypothetical protein 1345697 6999647 ECSE_1276 Escherichia coli SE11 hypothetical protein YP_002292551.1 1345479 D 409438 CDS YP_002292552.1 209918468 6999648 1345792..1347183 1 NC_011415.1 nitrite extrusion protein 1347183 6999648 ECSE_1277 Escherichia coli SE11 nitrite extrusion protein YP_002292552.1 1345792 D 409438 CDS YP_002292553.1 209918469 6999649 1347698..1351441 1 NC_011415.1 nitrate reductase 1 alpha subunit 1351441 6999649 ECSE_1278 Escherichia coli SE11 nitrate reductase 1 alpha subunit YP_002292553.1 1347698 D 409438 CDS YP_002292554.1 209918470 6999650 1351438..1352976 1 NC_011415.1 nitrate reductase 1 beta subunit 1352976 6999650 ECSE_1279 Escherichia coli SE11 nitrate reductase 1 beta subunit YP_002292554.1 1351438 D 409438 CDS YP_002292555.1 209918471 6999651 1352973..1353683 1 NC_011415.1 nitrate reductase 1 delta subunit 1353683 6999651 ECSE_1280 Escherichia coli SE11 nitrate reductase 1 delta subunit YP_002292555.1 1352973 D 409438 CDS YP_002292556.1 209918472 6999652 1353683..1354360 1 NC_011415.1 nitrate reductase 1 gamma subunit 1354360 6999652 ECSE_1281 Escherichia coli SE11 nitrate reductase 1 gamma subunit YP_002292556.1 1353683 D 409438 CDS YP_002292557.1 209918473 7003146 complement(1355086..1355928) 1 NC_011415.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1355928 purU 7003146 purU Escherichia coli SE11 formyltetrahydrofolate deformylase YP_002292557.1 1355086 R 409438 CDS YP_002292558.1 209918474 6999654 complement(1355978..1356436) 1 NC_011415.1 hypothetical protein 1356436 6999654 ECSE_1283 Escherichia coli SE11 hypothetical protein YP_002292558.1 1355978 R 409438 CDS YP_002292559.1 209918475 6999655 1356549..1357454 1 NC_011415.1 hypothetical protein 1357454 6999655 ECSE_1284 Escherichia coli SE11 hypothetical protein YP_002292559.1 1356549 D 409438 CDS YP_002292560.1 209918476 6999656 1357546..1358559 1 NC_011415.1 response regulator of RpoS 1358559 6999656 ECSE_1285 Escherichia coli SE11 response regulator of RpoS YP_002292560.1 1357546 D 409438 CDS YP_002292561.1 209918477 6999657 1358761..1359669 1 NC_011415.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalU 1359669 6999657 ECSE_1286 Escherichia coli SE11 UTP--glucose-1-phosphate uridylyltransferase subunit GalU YP_002292561.1 1358761 D 409438 CDS YP_002292562.1 209918478 6999658 complement(1359813..1360226) 1 NC_011415.1 global DNA-binding transcriptional dual regulator H-NS 1360226 6999658 ECSE_1287 Escherichia coli SE11 global DNA-binding transcriptional dual regulator H-NS YP_002292562.1 1359813 R 409438 CDS YP_002292563.1 209918479 6999659 1360831..1361448 1 NC_011415.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1361448 6999659 ECSE_1288 Escherichia coli SE11 thymidine kinase YP_002292563.1 1360831 D 409438 CDS YP_002292564.1 209918480 6999660 complement(1361750..1364425) 1 NC_011415.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1364425 6999660 ECSE_1289 Escherichia coli SE11 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_002292564.1 1361750 R 409438 CDS YP_002292565.1 209918481 6999661 1364902..1365549 1 NC_011415.1 hypothetical protein 1365549 6999661 ECSE_1290 Escherichia coli SE11 hypothetical protein YP_002292565.1 1364902 D 409438 CDS YP_002292566.1 209918482 6999662 1366287..1367918 1 NC_011415.1 oligopeptide ABC transporter substrate binding component 1367918 6999662 ECSE_1291 Escherichia coli SE11 oligopeptide ABC transporter substrate binding component YP_002292566.1 1366287 D 409438 CDS YP_002292567.1 209918483 6999663 1368004..1368924 1 NC_011415.1 oligopeptide transporter permease 1368924 oppB 6999663 oppB Escherichia coli SE11 oligopeptide transporter permease YP_002292567.1 1368004 D 409438 CDS YP_002292568.1 209918484 6999664 1368939..1369847 1 NC_011415.1 oligopeptide ABC transporter permease 1369847 6999664 ECSE_1293 Escherichia coli SE11 oligopeptide ABC transporter permease YP_002292568.1 1368939 D 409438 CDS YP_002292569.1 209918485 6999665 1369859..1370872 1 NC_011415.1 oligopeptide transporter ATP-binding component 1370872 oppD 6999665 oppD Escherichia coli SE11 oligopeptide transporter ATP-binding component YP_002292569.1 1369859 D 409438 CDS YP_002292570.1 209918486 6999666 1370869..1371873 1 NC_011415.1 oligopeptide ABC transporter ATP-binding protein 1371873 6999666 ECSE_1295 Escherichia coli SE11 oligopeptide ABC transporter ATP-binding protein YP_002292570.1 1370869 D 409438 CDS YP_002292571.1 209918487 6999667 complement(1371926..1372255) 1 NC_011415.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1372255 6999667 ECSE_1296 Escherichia coli SE11 dsDNA-mimic protein YP_002292571.1 1371926 R 409438 CDS YP_002292572.1 209918488 6999668 complement(1372290..1373750) 1 NC_011415.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1373750 cls 6999668 cls Escherichia coli SE11 cardiolipin synthetase YP_002292572.1 1372290 R 409438 CDS YP_002292573.1 209918489 6999669 1373782..1374066 1 NC_011415.1 hypothetical protein 1374066 6999669 ECSE_1298 Escherichia coli SE11 hypothetical protein YP_002292573.1 1373782 D 409438 CDS YP_002292574.1 209918490 6999670 complement(1374121..1375374) 1 NC_011415.1 voltage-gated potassium channel 1375374 6999670 ECSE_1299 Escherichia coli SE11 voltage-gated potassium channel YP_002292574.1 1374121 R 409438 CDS YP_002292575.1 209918491 6999671 complement(1375673..1375969) 1 NC_011415.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1375969 6999671 ECSE_1300 Escherichia coli SE11 YciI-like protein YP_002292575.1 1375673 R 409438 CDS YP_002292576.1 209918492 6999672 1376178..1376912 1 NC_011415.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; transport protein TonB 1376912 6999672 ECSE_1301 Escherichia coli SE11 transport protein TonB YP_002292576.1 1376178 D 409438 CDS YP_002292577.1 209918493 6999673 complement(1376952..1377350) 1 NC_011415.1 YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins; acyl-CoA thioester hydrolase 1377350 6999673 ECSE_1302 Escherichia coli SE11 acyl-CoA thioester hydrolase YP_002292577.1 1376952 R 409438 CDS YP_002292578.1 209918494 6999674 complement(1377455..1377994) 1 NC_011415.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1377994 6999674 ECSE_1303 Escherichia coli SE11 intracellular septation protein A YP_002292578.1 1377455 R 409438 CDS YP_002292579.1 209918495 6999675 complement(1378024..1378767) 1 NC_011415.1 hypothetical protein 1378767 6999675 ECSE_1304 Escherichia coli SE11 hypothetical protein YP_002292579.1 1378024 R 409438 CDS YP_002292580.1 209918496 6999676 1379124..1379762 1 NC_011415.1 receptor for colicin S4; outer membrane protein W 1379762 6999676 ECSE_1305 Escherichia coli SE11 outer membrane protein W YP_002292580.1 1379124 D 409438 CDS YP_002292581.1 209918497 6999677 complement(1379822..1380328) 1 NC_011415.1 hypothetical protein 1380328 6999677 ECSE_1306 Escherichia coli SE11 hypothetical protein YP_002292581.1 1379822 R 409438 CDS YP_002292582.1 209918498 6999678 complement(1380374..1380874) 1 NC_011415.1 hypothetical protein 1380874 6999678 ECSE_1307 Escherichia coli SE11 hypothetical protein YP_002292582.1 1380374 R 409438 CDS YP_002292583.1 209918499 6999679 complement(1380960..1381139) 1 NC_011415.1 hypothetical protein 1381139 6999679 ECSE_1308 Escherichia coli SE11 hypothetical protein YP_002292583.1 1380960 R 409438 CDS YP_002292584.1 209918500 6999680 complement(1381520..1382326) 1 NC_011415.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1382326 trpA 6999680 trpA Escherichia coli SE11 tryptophan synthase subunit alpha YP_002292584.1 1381520 R 409438 CDS YP_002292585.1 209918501 6999681 complement(1382326..1383519) 1 NC_011415.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1383519 6999681 ECSE_1310 Escherichia coli SE11 tryptophan synthase subunit beta YP_002292585.1 1382326 R 409438 CDS YP_002292586.1 209918502 6999682 complement(1383531..1384889) 1 NC_011415.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1384889 6999682 ECSE_1311 Escherichia coli SE11 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002292586.1 1383531 R 409438 CDS YP_002292587.1 209918503 6999683 complement(1384893..1386488) 1 NC_011415.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1386488 6999683 ECSE_1312 Escherichia coli SE11 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_002292587.1 1384893 R 409438 CDS YP_002292588.1 209918504 6999684 complement(1386488..1388050) 1 NC_011415.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1388050 6999684 ECSE_1313 Escherichia coli SE11 anthranilate synthase component I YP_002292588.1 1386488 R 409438 CDS YP_002292590.1 209918506 6999686 1388324..1389205 1 NC_011415.1 hypothetical protein 1389205 6999686 ECSE_1315 Escherichia coli SE11 hypothetical protein YP_002292590.1 1388324 D 409438 CDS YP_002292591.1 209918507 6999687 1389202..1389822 1 NC_011415.1 hypothetical protein 1389822 6999687 ECSE_1316 Escherichia coli SE11 hypothetical protein YP_002292591.1 1389202 D 409438 CDS YP_002292592.1 209918508 6999688 1389923..1390795 1 NC_011415.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA; 23S rRNA pseudouridylate synthase B 1390795 6999688 ECSE_1317 Escherichia coli SE11 23S rRNA pseudouridylate synthase B YP_002292592.1 1389923 D 409438 CDS YP_002292593.1 209918509 6999689 complement(1390835..1391425) 1 NC_011415.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1391425 6999689 ECSE_1318 Escherichia coli SE11 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_002292593.1 1390835 R 409438 CDS YP_002292594.1 209918510 6999690 complement(1391422..1392180) 1 NC_011415.1 short chain dehydrogenase 1392180 6999690 ECSE_1319 Escherichia coli SE11 short chain dehydrogenase YP_002292594.1 1391422 R 409438 CDS YP_002292595.1 209918511 6999691 1392400..1393449 1 NC_011415.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1393449 6999691 ECSE_1320 Escherichia coli SE11 putative periplasmic protease YP_002292595.1 1392400 D 409438 CDS YP_002292596.1 209918512 6999692 complement(1393485..1393736) 1 NC_011415.1 hypothetical protein 1393736 6999692 ECSE_1321 Escherichia coli SE11 hypothetical protein YP_002292596.1 1393485 R 409438 CDS YP_002292597.1 209918513 6999693 1394116..1396713 1 NC_011415.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1396713 6999693 ECSE_1322 Escherichia coli SE11 DNA topoisomerase I YP_002292597.1 1394116 D 409438 CDS YP_002292598.1 209918514 6999694 1396923..1397897 1 NC_011415.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1397897 cysB 6999694 cysB Escherichia coli SE11 transcriptional regulator CysB YP_002292598.1 1396923 D 409438 CDS YP_002292599.1 209918515 6999695 1398191..1398355 1 NC_011415.1 hypothetical protein 1398355 6999695 ECSE_1324 Escherichia coli SE11 hypothetical protein YP_002292599.1 1398191 D 409438 CDS YP_002292600.1 209918516 6999696 1398337..1398525 1 NC_011415.1 hypothetical protein 1398525 6999696 ECSE_1325 Escherichia coli SE11 hypothetical protein YP_002292600.1 1398337 D 409438 CDS YP_002292601.1 209918517 6999697 1398898..1401573 1 NC_011415.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1401573 6999697 ECSE_1326 Escherichia coli SE11 aconitate hydratase YP_002292601.1 1398898 D 409438 CDS YP_002292602.1 209918518 6999698 complement(1401637..1402227) 1 NC_011415.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1402227 ribA 6999698 ribA Escherichia coli SE11 GTP cyclohydrolase II YP_002292602.1 1401637 R 409438 CDS YP_002292603.1 209918519 6999699 1402397..1403161 1 NC_011415.1 phosphatidylglycerophosphatase B 1403161 6999699 ECSE_1328 Escherichia coli SE11 phosphatidylglycerophosphatase B YP_002292603.1 1402397 D 409438 CDS YP_002292604.1 209918520 6999700 1403310..1403618 1 NC_011415.1 hypothetical protein 1403618 6999700 ECSE_1329 Escherichia coli SE11 hypothetical protein YP_002292604.1 1403310 D 409438 CDS YP_002292605.1 209918521 6999701 1403625..1404794 1 NC_011415.1 tetratricopeptide repeat protein 1404794 6999701 ECSE_1330 Escherichia coli SE11 tetratricopeptide repeat protein YP_002292605.1 1403625 D 409438 CDS YP_002292606.1 209918522 6999702 complement(1404828..1404974) 1 NC_011415.1 hypothetical protein 1404974 6999702 ECSE_1331 Escherichia coli SE11 hypothetical protein YP_002292606.1 1404828 R 409438 CDS YP_002292607.1 209918523 6999703 1404987..1405724 1 NC_011415.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1405724 6999703 ECSE_1332 Escherichia coli SE11 orotidine 5'-phosphate decarboxylase YP_002292607.1 1404987 D 409438 CDS YP_002292608.1 209918524 6999704 1405724..1406050 1 NC_011415.1 involved in start site selection during the initiation of translation; translation initiation factor Sui1 1406050 6999704 ECSE_1333 Escherichia coli SE11 translation initiation factor Sui1 YP_002292608.1 1405724 D 409438 CDS YP_002292609.1 209918525 6999705 complement(1406176..1406394) 1 NC_011415.1 lipoprotein 1406394 6999705 ECSE_1334 Escherichia coli SE11 lipoprotein YP_002292609.1 1406176 R 409438 CDS YP_002292610.1 209918526 6999706 complement(1406663..1407412) 1 NC_011415.1 putative transcriptional regulator 1407412 6999706 ECSE_1335 Escherichia coli SE11 putative transcriptional regulator YP_002292610.1 1406663 R 409438 CDS YP_002292611.1 209918527 6999707 complement(1407502..1407675) 1 NC_011415.1 hypothetical protein 1407675 6999707 ECSE_1336 Escherichia coli SE11 hypothetical protein YP_002292611.1 1407502 R 409438 CDS YP_002292612.1 209918528 6999708 complement(1407822..1409807) 1 NC_011415.1 c-di-GMP phosphodiesterase; probably degrades signalling molecule c-di-GMP; RNase II stability modulator 1409807 6999708 ECSE_1337 Escherichia coli SE11 RNase II stability modulator YP_002292612.1 1407822 R 409438 CDS YP_002292613.1 209918529 6999709 complement(1410043..1411977) 1 NC_011415.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 1411977 6999709 ECSE_1338 Escherichia coli SE11 exoribonuclease II YP_002292613.1 1410043 R 409438 CDS YP_002292614.1 209918530 6999710 complement(1412045..1413172) 1 NC_011415.1 putative oxidoreductase 1413172 6999710 ECSE_1339 Escherichia coli SE11 putative oxidoreductase YP_002292614.1 1412045 R 409438 CDS YP_002292615.1 209918531 6999711 complement(1413316..1414104) 1 NC_011415.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1414104 6999711 ECSE_1340 Escherichia coli SE11 enoyl-(acyl carrier protein) reductase YP_002292615.1 1413316 R 409438 CDS YP_002292616.1 209918532 6999712 complement(1414472..1414825) 1 NC_011415.1 hypothetical protein 1414825 6999712 ECSE_1341 Escherichia coli SE11 hypothetical protein YP_002292616.1 1414472 R 409438 CDS YP_002292617.1 209918533 6999713 complement(1414893..1415699) 1 NC_011415.1 peptide ABC transporter ATP-binding protein 1415699 6999713 ECSE_1342 Escherichia coli SE11 peptide ABC transporter ATP-binding protein YP_002292617.1 1414893 R 409438 CDS YP_002292618.1 209918534 6999714 complement(1415701..1416693) 1 NC_011415.1 peptide ABC transporter ATP-binding protein 1416693 6999714 ECSE_1343 Escherichia coli SE11 peptide ABC transporter ATP-binding protein YP_002292618.1 1415701 R 409438 CDS YP_002292619.1 209918535 6999715 complement(1416693..1417583) 1 NC_011415.1 peptide ABC transporter permease 1417583 6999715 ECSE_1344 Escherichia coli SE11 peptide ABC transporter permease YP_002292619.1 1416693 R 409438 CDS YP_002292620.1 209918536 6999716 complement(1417570..1418535) 1 NC_011415.1 peptide ABC transporter permease 1418535 6999716 ECSE_1345 Escherichia coli SE11 peptide ABC transporter permease YP_002292620.1 1417570 R 409438 CDS YP_002292621.1 209918537 6999717 complement(1418532..1420175) 1 NC_011415.1 peptide ABC transporter substrate binding component 1420175 6999717 ECSE_1346 Escherichia coli SE11 peptide ABC transporter substrate binding component YP_002292621.1 1418532 R 409438 CDS YP_002292622.1 209918538 6999718 complement(1420488..1420733) 1 NC_011415.1 hypothetical protein 1420733 6999718 ECSE_1347 Escherichia coli SE11 hypothetical protein YP_002292622.1 1420488 R 409438 CDS YP_002292623.1 209918539 6999719 complement(1420867..1422252) 1 NC_011415.1 putative amino acid/amine transport protein 1422252 6999719 ECSE_1348 Escherichia coli SE11 putative amino acid/amine transport protein YP_002292623.1 1420867 R 409438 CDS YP_002292624.1 209918540 6999720 complement(1422555..1424051) 1 NC_011415.1 putative glutamine synthase 1424051 6999720 ECSE_1349 Escherichia coli SE11 putative glutamine synthase YP_002292624.1 1422555 R 409438 CDS YP_002292625.1 209918541 6999721 1424185..1424949 1 NC_011415.1 catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate; gamma-glutamyl-gamma-aminobutyrate hydrolase 1424949 puuD 6999721 puuD Escherichia coli SE11 gamma-glutamyl-gamma-aminobutyrate hydrolase YP_002292625.1 1424185 D 409438 CDS YP_002292626.1 209918542 6999722 1424976..1425533 1 NC_011415.1 regulates genes involved in putrescine degradation; DNA-binding transcriptional repressor PuuR 1425533 6999722 ECSE_1351 Escherichia coli SE11 DNA-binding transcriptional repressor PuuR YP_002292626.1 1424976 D 409438 CDS YP_002292627.1 209918543 6999723 1425808..1427295 1 NC_011415.1 catalyzes the formation of gamma-glutamyl-gamma-aminobutyrate from Gamma-glutamyl-gamma-aminobutyraldehyde; involved in putrescine degradation; gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase 1427295 6999723 ECSE_1352 Escherichia coli SE11 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase YP_002292627.1 1425808 D 409438 CDS YP_002292628.1 209918544 6999724 1427297..1428577 1 NC_011415.1 putative oxidoreductase 1428577 6999724 ECSE_1353 Escherichia coli SE11 putative oxidoreductase YP_002292628.1 1427297 D 409438 CDS YP_002292629.1 209918545 6999725 1428615..1429880 1 NC_011415.1 putrescine-inducible GABA aminotransferase; catalyzes the formation of glutamate and succinate semialdehyde from 4-aminobutyrate and 2-oxoglutarate; 4-aminobutyrate transaminase 1429880 6999725 ECSE_1354 Escherichia coli SE11 4-aminobutyrate transaminase YP_002292629.1 1428615 D 409438 CDS YP_002292630.1 209918546 6999726 complement(1430000..1430977) 1 NC_011415.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor; phage shock protein operon transcriptional activator 1430977 pspF 6999726 pspF Escherichia coli SE11 phage shock protein operon transcriptional activator YP_002292630.1 1430000 R 409438 CDS YP_002292631.1 209918547 6999727 1431144..1431812 1 NC_011415.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF; phage shock protein PspA 1431812 6999727 ECSE_1356 Escherichia coli SE11 phage shock protein PspA YP_002292631.1 1431144 D 409438 CDS YP_002292632.1 209918548 6999728 1431866..1432090 1 NC_011415.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding; phage shock protein B 1432090 pspB 6999728 pspB Escherichia coli SE11 phage shock protein B YP_002292632.1 1431866 D 409438 CDS YP_002292633.1 209918549 6999729 1432090..1432449 1 NC_011415.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock; DNA-binding transcriptional activator PspC 1432449 6999729 ECSE_1358 Escherichia coli SE11 DNA-binding transcriptional activator PspC YP_002292633.1 1432090 D 409438 CDS YP_002292634.1 209918550 6999730 1432458..1432679 1 NC_011415.1 peripheral inner membrane phage-shock protein 1432679 6999730 ECSE_1359 Escherichia coli SE11 peripheral inner membrane phage-shock protein YP_002292634.1 1432458 D 409438 CDS YP_002292635.1 209918551 6999731 1432754..1433068 1 NC_011415.1 rhodanese; catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide; thiosulfate:cyanide sulfurtransferase 1433068 6999731 ECSE_1360 Escherichia coli SE11 thiosulfate:cyanide sulfurtransferase YP_002292635.1 1432754 D 409438 CDS YP_002292636.1 209918552 6999732 1433281..1434960 1 NC_011415.1 putative sucrose phosphorylase 1434960 6999732 ECSE_1361 Escherichia coli SE11 putative sucrose phosphorylase YP_002292636.1 1433281 D 409438 CDS YP_002292637.1 209918553 6999733 1434974..1436266 1 NC_011415.1 putative ABC transporter substrate binding component 1436266 6999733 ECSE_1362 Escherichia coli SE11 putative ABC transporter substrate binding component YP_002292637.1 1434974 D 409438 CDS YP_002292638.1 209918554 6999734 1436287..1437168 1 NC_011415.1 putative ABC transporter permease 1437168 6999734 ECSE_1363 Escherichia coli SE11 putative ABC transporter permease YP_002292638.1 1436287 D 409438 CDS YP_002292639.1 209918555 6999735 1437155..1437997 1 NC_011415.1 putative ABC transporter permease 1437997 6999735 ECSE_1364 Escherichia coli SE11 putative ABC transporter permease YP_002292639.1 1437155 D 409438 CDS YP_002292640.1 209918556 6999736 1438028..1439080 1 NC_011415.1 putative dehydrogenase 1439080 6999736 ECSE_1365 Escherichia coli SE11 putative dehydrogenase YP_002292640.1 1438028 D 409438 CDS YP_002292641.1 209918557 6999737 1439098..1439886 1 NC_011415.1 hypothetical protein 1439886 6999737 ECSE_1366 Escherichia coli SE11 hypothetical protein YP_002292641.1 1439098 D 409438 CDS YP_002292642.1 209918558 6999738 1439896..1440951 1 NC_011415.1 putative dehydrogenase 1440951 6999738 ECSE_1367 Escherichia coli SE11 putative dehydrogenase YP_002292642.1 1439896 D 409438 CDS YP_002292643.1 209918559 6999739 1440948..1443215 1 NC_011415.1 hypothetical protein 1443215 6999739 ECSE_1368 Escherichia coli SE11 hypothetical protein YP_002292643.1 1440948 D 409438 CDS YP_002292644.1 209918560 6999740 1443212..1443871 1 NC_011415.1 putative beta-phosphoglucomutase 1443871 6999740 ECSE_1369 Escherichia coli SE11 putative beta-phosphoglucomutase YP_002292644.1 1443212 D 409438 CDS YP_002292645.1 209918561 6999741 1443885..1444967 1 NC_011415.1 putative ABC transporter ATP-binding protein 1444967 6999741 ECSE_1370 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002292645.1 1443885 D 409438 CDS YP_002292646.1 209918562 6999742 1445012..1445917 1 NC_011415.1 hypothetical protein 1445917 6999742 ECSE_1371 Escherichia coli SE11 hypothetical protein YP_002292646.1 1445012 D 409438 CDS YP_002292647.1 209918563 6999743 complement(1446028..1447026) 1 NC_011415.1 putative transcriptional regulator 1447026 6999743 ECSE_1372 Escherichia coli SE11 putative transcriptional regulator YP_002292647.1 1446028 R 409438 CDS YP_002292648.1 209918564 6999744 1447181..1448578 1 NC_011415.1 hypothetical protein 1448578 6999744 ECSE_1373 Escherichia coli SE11 hypothetical protein YP_002292648.1 1447181 D 409438 CDS YP_002292649.1 209918565 6999745 1448575..1449636 1 NC_011415.1 hypothetical protein 1449636 6999745 ECSE_1374 Escherichia coli SE11 hypothetical protein YP_002292649.1 1448575 D 409438 CDS YP_002292650.1 209918566 6999746 1449784..1451325 1 NC_011415.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids; DNA-binding transcriptional regulator TyrR 1451325 6999746 ECSE_1375 Escherichia coli SE11 DNA-binding transcriptional regulator TyrR YP_002292650.1 1449784 D 409438 CDS YP_002292651.1 209918567 6999747 complement(1451369..1451875) 1 NC_011415.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1451875 tpx 6999747 tpx Escherichia coli SE11 thiol peroxidase YP_002292651.1 1451369 R 409438 CDS YP_002292652.1 209918568 6999748 1451994..1452959 1 NC_011415.1 putative muconate cycloisomerase I 1452959 6999748 ECSE_1377 Escherichia coli SE11 putative muconate cycloisomerase I YP_002292652.1 1451994 D 409438 CDS YP_002292653.1 209918569 6999749 complement(1452934..1453662) 1 NC_011415.1 murein peptide amidase A 1453662 6999749 ECSE_1378 Escherichia coli SE11 murein peptide amidase A YP_002292653.1 1452934 R 409438 CDS YP_002292654.1 209918570 6999750 complement(1453972..1454610) 1 NC_011415.1 hypothetical protein 1454610 6999750 ECSE_1379 Escherichia coli SE11 hypothetical protein YP_002292654.1 1453972 R 409438 CDS YP_002292655.1 209918571 6999751 complement(1454628..1455560) 1 NC_011415.1 hypothetical protein 1455560 6999751 ECSE_1380 Escherichia coli SE11 hypothetical protein YP_002292655.1 1454628 R 409438 CDS YP_002292656.1 209918572 6999752 complement(1455560..1456492) 1 NC_011415.1 hypothetical protein 1456492 6999752 ECSE_1381 Escherichia coli SE11 hypothetical protein YP_002292656.1 1455560 R 409438 CDS YP_002292657.1 209918573 6999753 1456618..1457517 1 NC_011415.1 putative transcriptional regulator 1457517 6999753 ECSE_1382 Escherichia coli SE11 putative transcriptional regulator YP_002292657.1 1456618 D 409438 CDS YP_002292658.1 209918574 6999754 1457606..1457731 1 NC_011415.1 hypothetical protein 1457731 6999754 ECSE_1383 Escherichia coli SE11 hypothetical protein YP_002292658.1 1457606 D 409438 CDS YP_002292659.1 209918575 6999755 1457854..1459467 1 NC_011415.1 murein tripeptide transport protein 1459467 6999755 ECSE_1384 Escherichia coli SE11 murein tripeptide transport protein YP_002292659.1 1457854 D 409438 CDS YP_002292660.1 209918576 6999756 complement(1459518..1460549) 1 NC_011415.1 hypothetical protein 1460549 6999756 ECSE_1385 Escherichia coli SE11 hypothetical protein YP_002292660.1 1459518 R 409438 CDS YP_002292661.1 209918577 6999757 1460793..1461050 1 NC_011415.1 hypothetical protein 1461050 6999757 ECSE_1386 Escherichia coli SE11 hypothetical protein YP_002292661.1 1460793 D 409438 CDS YP_002292662.1 209918578 6999758 complement(1461100..1462050) 1 NC_011415.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1462050 6999758 ECSE_1387 Escherichia coli SE11 universal stress protein UspE YP_002292662.1 1461100 R 409438 CDS YP_002292663.1 209918579 6999759 complement(1462202..1462996) 1 NC_011415.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1462996 6999759 ECSE_1388 Escherichia coli SE11 fumarate/nitrate reduction transcriptional regulator YP_002292663.1 1462202 R 409438 CDS YP_002292664.1 209918580 6999760 complement(1463149..1463664) 1 NC_011415.1 O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1463664 6999760 ECSE_1389 Escherichia coli SE11 O-6-alkylguanine-DNA:cysteine-protein methyltransferase YP_002292664.1 1463149 R 409438 CDS YP_002292665.1 209918581 6999761 complement(1463675..1465201) 1 NC_011415.1 putative aminobenzoyl-glutamate transporter 1465201 abgT 6999761 abgT Escherichia coli SE11 putative aminobenzoyl-glutamate transporter YP_002292665.1 1463675 R 409438 CDS YP_002292666.1 209918582 6999762 complement(1465238..1466683) 1 NC_011415.1 aminobenzoyl-glutamate utilization protein 1466683 6999762 ECSE_1391 Escherichia coli SE11 aminobenzoyl-glutamate utilization protein YP_002292666.1 1465238 R 409438 CDS YP_002292667.1 209918583 6999763 complement(1466683..1467993) 1 NC_011415.1 putative aminohydrolase 1467993 6999763 ECSE_1392 Escherichia coli SE11 putative aminohydrolase YP_002292667.1 1466683 R 409438 CDS YP_002292668.1 209918584 6999764 1468169..1469077 1 NC_011415.1 putative DNA-binding transcriptional regulator 1469077 6999764 ECSE_1393 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002292668.1 1468169 D 409438 CDS YP_002292669.1 209918585 6999765 1469407..1469970 1 NC_011415.1 hypothetical protein 1469970 6999765 ECSE_1394 Escherichia coli SE11 hypothetical protein YP_002292669.1 1469407 D 409438 CDS YP_002292670.1 209918586 6999766 complement(1469991..1471283) 1 NC_011415.1 hypothetical protein 1471283 6999766 ECSE_1395 Escherichia coli SE11 hypothetical protein YP_002292670.1 1469991 R 409438 CDS YP_002292671.1 209918587 6999767 1471478..1472461 1 NC_011415.1 zinc transporter 1472461 zntB 6999767 zntB Escherichia coli SE11 zinc transporter YP_002292671.1 1471478 D 409438 CDS YP_002292672.1 209918588 6999768 1472939..1474312 1 NC_011415.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 1474312 6999768 ECSE_1397 Escherichia coli SE11 ATP-dependent RNA helicase DbpA YP_002292672.1 1472939 D 409438 CDS YP_002292673.1 209918589 6999769 complement(1474441..1475376) 1 NC_011415.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1475376 6999769 ECSE_1398 Escherichia coli SE11 C32 tRNA thiolase YP_002292673.1 1474441 R 409438 CDS YP_002292674.1 209918590 6999770 complement(1475428..1476663) 1 NC_011415.1 putative phage integrase 1476663 6999770 ECSE_1399 Escherichia coli SE11 putative phage integrase YP_002292674.1 1475428 R 409438 CDS YP_002292675.1 209918591 6999771 complement(1476665..1476904) 1 NC_011415.1 hypothetical protein 1476904 6999771 ECSE_1400 Escherichia coli SE11 hypothetical protein YP_002292675.1 1476665 R 409438 CDS YP_002292676.1 209918592 6999772 complement(1476959..1477240) 1 NC_011415.1 Rac prophage; hypothetical protein 1477240 6999772 ECSE_1401 Escherichia coli SE11 hypothetical protein YP_002292676.1 1476959 R 409438 CDS YP_002292677.1 209918593 6999773 complement(1477412..1478221) 1 NC_011415.1 recombination and repair protein RecT 1478221 recT 6999773 recT Escherichia coli SE11 recombination and repair protein RecT YP_002292677.1 1477412 R 409438 CDS YP_002292678.1 209918594 6999774 complement(1478214..1480814) 1 NC_011415.1 The RecE (also known as exonuclease VIII) pathway is an alternative pathway for the initiation of homologous recombination in Escherichia coli. The RecE pathway is activated in recB, recC sbcA (suppressors of recB and recC) mutants. Activation of the RecE pathway results in the production of at least two phage proteins relevant for recombinational repair. RecE is a duplex DNA-specific exonuclease which produces 3' overhangs in duplex DNA by preferentially degrading the 5'-ending strands. Recombinational repair of E.coli chromosomal DNA involves as well other proteins: RecA, RecF, RecJ, RecO, RecR, and RuvC.; exonuclease VIII 1480814 6999774 ECSE_1403 Escherichia coli SE11 exonuclease VIII YP_002292678.1 1478214 R 409438 CDS YP_002292679.1 209918595 6999775 complement(1480916..1481191) 1 NC_011415.1 Rac prophage hypothetical protein; hypothetical protein 1481191 6999775 ECSE_1404 Escherichia coli SE11 hypothetical protein YP_002292679.1 1480916 R 409438 CDS YP_002292680.1 209918596 6999776 complement(1481266..1481442) 1 NC_011415.1 hypothetical protein 1481442 6999776 ECSE_1405 Escherichia coli SE11 hypothetical protein YP_002292680.1 1481266 R 409438 CDS YP_002292681.1 209918597 6999777 complement(1481436..1481657) 1 NC_011415.1 Rac prophage Kil protein; Kil overexpression leads to morphological defects and inhibits cell division; FtsZ inhibitor protein 1481657 kil 6999777 kil Escherichia coli SE11 FtsZ inhibitor protein YP_002292681.1 1481436 R 409438 CDS YP_002292682.1 209918598 6999778 1482100..1482588 1 NC_011415.1 hypothetical protein 1482588 6999778 ECSE_1407 Escherichia coli SE11 hypothetical protein YP_002292682.1 1482100 D 409438 CDS YP_002292683.1 209918599 6999779 complement(1482585..1482740) 1 NC_011415.1 hypothetical protein 1482740 6999779 ECSE_1408 Escherichia coli SE11 hypothetical protein YP_002292683.1 1482585 R 409438 CDS YP_002292684.1 209918600 6999780 complement(1482751..1482930) 1 NC_011415.1 hypothetical protein 1482930 6999780 ECSE_1409 Escherichia coli SE11 hypothetical protein YP_002292684.1 1482751 R 409438 CDS YP_002292685.1 209918601 6999781 complement(1483173..1483484) 1 NC_011415.1 putative transcriptional regulator 1483484 6999781 ECSE_1410 Escherichia coli SE11 putative transcriptional regulator YP_002292685.1 1483173 R 409438 CDS YP_002292686.1 209918602 6999782 1483672..1483926 1 NC_011415.1 putative transcriptional regulator 1483926 6999782 ECSE_1411 Escherichia coli SE11 putative transcriptional regulator YP_002292686.1 1483672 D 409438 CDS YP_002292687.1 209918603 6999783 1483923..1484345 1 NC_011415.1 hypothetical protein 1484345 6999783 ECSE_1412 Escherichia coli SE11 hypothetical protein YP_002292687.1 1483923 D 409438 CDS YP_002292688.1 209918604 6999784 1484358..1485215 1 NC_011415.1 hypothetical protein 1485215 6999784 ECSE_1413 Escherichia coli SE11 hypothetical protein YP_002292688.1 1484358 D 409438 CDS YP_002292689.1 209918605 6999785 1485222..1485968 1 NC_011415.1 putative replication protein 1485968 6999785 ECSE_1414 Escherichia coli SE11 putative replication protein YP_002292689.1 1485222 D 409438 CDS YP_002292690.1 209918606 6999786 1485940..1486752 1 NC_011415.1 hypothetical protein 1486752 6999786 ECSE_1415 Escherichia coli SE11 hypothetical protein YP_002292690.1 1485940 D 409438 CDS YP_002292691.1 209918607 6999787 1486768..1487145 1 NC_011415.1 hypothetical protein 1487145 6999787 ECSE_1416 Escherichia coli SE11 hypothetical protein YP_002292691.1 1486768 D 409438 CDS YP_002292692.1 209918608 6999788 1487436..1489118 1 NC_011415.1 hypothetical protein 1489118 6999788 ECSE_1417 Escherichia coli SE11 hypothetical protein YP_002292692.1 1487436 D 409438 CDS YP_002292693.1 209918609 6999789 1489646..1490695 1 NC_011415.1 hypothetical protein 1490695 6999789 ECSE_1418 Escherichia coli SE11 hypothetical protein YP_002292693.1 1489646 D 409438 CDS YP_002292694.1 209918610 6999790 complement(1491180..1491833) 1 NC_011415.1 transposase 1491833 6999790 ECSE_1419 Escherichia coli SE11 transposase YP_002292694.1 1491180 R 409438 CDS YP_002292695.1 209918611 6999791 complement(1492046..1492393) 1 NC_011415.1 hypothetical protein 1492393 6999791 ECSE_1420 Escherichia coli SE11 hypothetical protein YP_002292695.1 1492046 R 409438 CDS YP_002292696.1 209918612 6999792 1492535..1492735 1 NC_011415.1 hypothetical protein 1492735 6999792 ECSE_1421 Escherichia coli SE11 hypothetical protein YP_002292696.1 1492535 D 409438 CDS YP_002292697.1 209918613 6999793 1492989..1493588 1 NC_011415.1 hypothetical protein 1493588 6999793 ECSE_1422 Escherichia coli SE11 hypothetical protein YP_002292697.1 1492989 D 409438 CDS YP_002292698.1 209918614 6999794 1493588..1493878 1 NC_011415.1 hypothetical protein 1493878 6999794 ECSE_1423 Escherichia coli SE11 hypothetical protein YP_002292698.1 1493588 D 409438 CDS YP_002292699.1 209918615 6999795 1493875..1494417 1 NC_011415.1 hypothetical protein 1494417 6999795 ECSE_1424 Escherichia coli SE11 hypothetical protein YP_002292699.1 1493875 D 409438 CDS YP_002292700.1 209918616 6999796 1495011..1495175 1 NC_011415.1 hypothetical protein 1495175 6999796 ECSE_1425 Escherichia coli SE11 hypothetical protein YP_002292700.1 1495011 D 409438 CDS YP_002292701.1 209918617 6999797 1495462..1495890 1 NC_011415.1 hypothetical protein 1495890 6999797 ECSE_1426 Escherichia coli SE11 hypothetical protein YP_002292701.1 1495462 D 409438 CDS YP_002292702.1 209918618 6999798 1496041..1496436 1 NC_011415.1 hypothetical protein 1496436 6999798 ECSE_1427 Escherichia coli SE11 hypothetical protein YP_002292702.1 1496041 D 409438 CDS YP_002292703.1 209918619 6999799 1496688..1496903 1 NC_011415.1 putative phage lysis protein 1496903 6999799 ECSE_1428 Escherichia coli SE11 putative phage lysis protein YP_002292703.1 1496688 D 409438 CDS YP_002292704.1 209918620 6999800 1496903..1497400 1 NC_011415.1 putative phage lysozyme 1497400 6999800 ECSE_1429 Escherichia coli SE11 putative phage lysozyme YP_002292704.1 1496903 D 409438 CDS YP_002292705.1 209918621 6999801 1497397..1497861 1 NC_011415.1 putative phage endopeptidase 1497861 6999801 ECSE_1430 Escherichia coli SE11 putative phage endopeptidase YP_002292705.1 1497397 D 409438 CDS YP_002292706.1 209918622 6999802 1497999..1499456 1 NC_011415.1 potassium uptake protein 1499456 6999802 ECSE_1431 Escherichia coli SE11 potassium uptake protein YP_002292706.1 1497999 D 409438 CDS YP_002292707.1 209918623 6999803 1499594..1500385 1 NC_011415.1 phage DNA methylase/nuclease 1500385 6999803 ECSE_1432 Escherichia coli SE11 phage DNA methylase/nuclease YP_002292707.1 1499594 D 409438 CDS YP_002292708.1 209918624 6999804 1500357..1501310 1 NC_011415.1 hypothetical protein 1501310 6999804 ECSE_1433 Escherichia coli SE11 hypothetical protein YP_002292708.1 1500357 D 409438 CDS YP_002292709.1 209918625 6999805 1501657..1502595 1 NC_011415.1 hypothetical protein 1502595 6999805 ECSE_1434 Escherichia coli SE11 hypothetical protein YP_002292709.1 1501657 D 409438 CDS YP_002292710.1 209918626 6999806 1502567..1503877 1 NC_011415.1 hypothetical protein 1503877 6999806 ECSE_1435 Escherichia coli SE11 hypothetical protein YP_002292710.1 1502567 D 409438 CDS YP_002292711.1 209918627 6999807 1503880..1505286 1 NC_011415.1 hypothetical protein 1505286 6999807 ECSE_1436 Escherichia coli SE11 hypothetical protein YP_002292711.1 1503880 D 409438 CDS YP_002292712.1 209918628 6999808 1505270..1506382 1 NC_011415.1 hypothetical protein 1506382 6999808 ECSE_1437 Escherichia coli SE11 hypothetical protein YP_002292712.1 1505270 D 409438 CDS YP_002292713.1 209918629 6999809 1506415..1507251 1 NC_011415.1 hypothetical protein 1507251 6999809 ECSE_1438 Escherichia coli SE11 hypothetical protein YP_002292713.1 1506415 D 409438 CDS YP_002292714.1 209918630 6999810 1507257..1508489 1 NC_011415.1 hypothetical protein 1508489 6999810 ECSE_1439 Escherichia coli SE11 hypothetical protein YP_002292714.1 1507257 D 409438 CDS YP_002292715.1 209918631 6999811 1508532..1508708 1 NC_011415.1 hypothetical protein 1508708 6999811 ECSE_1440 Escherichia coli SE11 hypothetical protein YP_002292715.1 1508532 D 409438 CDS YP_002292716.1 209918632 6999812 1508712..1509107 1 NC_011415.1 hypothetical protein 1509107 6999812 ECSE_1441 Escherichia coli SE11 hypothetical protein YP_002292716.1 1508712 D 409438 CDS YP_002292717.1 209918633 6999813 1509107..1509490 1 NC_011415.1 hypothetical protein 1509490 6999813 ECSE_1442 Escherichia coli SE11 hypothetical protein YP_002292717.1 1509107 D 409438 CDS YP_002292718.1 209918634 6999814 1509491..1509871 1 NC_011415.1 hypothetical protein 1509871 6999814 ECSE_1443 Escherichia coli SE11 hypothetical protein YP_002292718.1 1509491 D 409438 CDS YP_002292719.1 209918635 6999815 1509868..1510260 1 NC_011415.1 hypothetical protein 1510260 6999815 ECSE_1444 Escherichia coli SE11 hypothetical protein YP_002292719.1 1509868 D 409438 CDS YP_002292720.1 209918636 6999816 1510443..1511249 1 NC_011415.1 hypothetical protein 1511249 6999816 ECSE_1445 Escherichia coli SE11 hypothetical protein YP_002292720.1 1510443 D 409438 CDS YP_002292721.1 209918637 6999817 1511400..1511759 1 NC_011415.1 hypothetical protein 1511759 6999817 ECSE_1446 Escherichia coli SE11 hypothetical protein YP_002292721.1 1511400 D 409438 CDS YP_002292722.1 209918638 6999818 1511834..1512067 1 NC_011415.1 hypothetical protein 1512067 6999818 ECSE_1447 Escherichia coli SE11 hypothetical protein YP_002292722.1 1511834 D 409438 CDS YP_002292723.1 209918639 6999819 1512233..1515466 1 NC_011415.1 putative phage tail protein 1515466 6999819 ECSE_1448 Escherichia coli SE11 putative phage tail protein YP_002292723.1 1512233 D 409438 CDS YP_002292724.1 209918640 6999820 1515459..1515797 1 NC_011415.1 putative phage minor tail protein 1515797 6999820 ECSE_1449 Escherichia coli SE11 putative phage minor tail protein YP_002292724.1 1515459 D 409438 CDS YP_002292725.1 209918641 6999821 1515797..1516495 1 NC_011415.1 putative phage minor tail protein 1516495 6999821 ECSE_1450 Escherichia coli SE11 putative phage minor tail protein YP_002292725.1 1515797 D 409438 CDS YP_002292726.1 209918642 6999822 1516501..1517244 1 NC_011415.1 putative phage tail assembly protein 1517244 6999822 ECSE_1451 Escherichia coli SE11 putative phage tail assembly protein YP_002292726.1 1516501 D 409438 CDS YP_002292727.1 209918643 6999823 1517241..1517783 1 NC_011415.1 putative phage tail component 1517783 6999823 ECSE_1452 Escherichia coli SE11 putative phage tail component YP_002292727.1 1517241 D 409438 CDS YP_002292728.1 209918644 6999824 1517844..1521341 1 NC_011415.1 putative phage tail component 1521341 6999824 ECSE_1453 Escherichia coli SE11 putative phage tail component YP_002292728.1 1517844 D 409438 CDS YP_002292729.1 209918645 6999825 1521412..1522011 1 NC_011415.1 hypothetical protein 1522011 6999825 ECSE_1454 Escherichia coli SE11 hypothetical protein YP_002292729.1 1521412 D 409438 CDS YP_002292730.1 209918646 6999826 1522076..1525474 1 NC_011415.1 putative phage tail fiber protein 1525474 6999826 ECSE_1455 Escherichia coli SE11 putative phage tail fiber protein YP_002292730.1 1522076 D 409438 CDS YP_002292731.1 209918647 6999827 1525474..1526058 1 NC_011415.1 putative phage tail fiber protein 1526058 6999827 ECSE_1456 Escherichia coli SE11 putative phage tail fiber protein YP_002292731.1 1525474 D 409438 CDS YP_002292732.1 209918648 6999828 complement(1526132..1527463) 1 NC_011415.1 hypothetical protein 1527463 6999828 ECSE_1457 Escherichia coli SE11 hypothetical protein YP_002292732.1 1526132 R 409438 CDS YP_002292733.1 209918649 6999829 1527738..1527911 1 NC_011415.1 hypothetical protein 1527911 6999829 ECSE_1458 Escherichia coli SE11 hypothetical protein YP_002292733.1 1527738 D 409438 CDS YP_002292734.1 209918650 6999830 complement(1528176..1528610) 1 NC_011415.1 hypothetical protein 1528610 6999830 ECSE_1459 Escherichia coli SE11 hypothetical protein YP_002292734.1 1528176 R 409438 CDS YP_002292735.1 209918651 6999831 complement(1528751..1529884) 1 NC_011415.1 outer membrane protein porin OmpN 1529884 6999831 ECSE_1460 Escherichia coli SE11 outer membrane protein porin OmpN YP_002292735.1 1528751 R 409438 CDS YP_002292736.1 209918652 6999832 complement(1530251..1533775) 1 NC_011415.1 putative oxidoreductase Fe-S subunit 1533775 6999832 ECSE_1461 Escherichia coli SE11 putative oxidoreductase Fe-S subunit YP_002292736.1 1530251 R 409438 CDS YP_002292737.1 209918653 6999833 complement(1533785..1533916) 1 NC_011415.1 hypothetical protein 1533916 6999833 ECSE_1462 Escherichia coli SE11 hypothetical protein YP_002292737.1 1533785 R 409438 CDS YP_002292738.1 209918654 6999834 1534049..1534315 1 NC_011415.1 hypothetical protein 1534315 6999834 ECSE_1463 Escherichia coli SE11 hypothetical protein YP_002292738.1 1534049 D 409438 CDS YP_002292739.1 209918655 6999835 complement(1534312..1534734) 1 NC_011415.1 heat-inducible protein 1534734 6999835 ECSE_1464 Escherichia coli SE11 heat-inducible protein YP_002292739.1 1534312 R 409438 CDS YP_002292740.1 209918656 6999836 complement(1534845..1535834) 1 NC_011415.1 D-lactate dehydrogenase 1535834 6999836 ECSE_1465 Escherichia coli SE11 D-lactate dehydrogenase YP_002292740.1 1534845 R 409438 CDS YP_002292741.1 209918657 6999837 1536042..1538681 1 NC_011415.1 hypothetical protein 1538681 6999837 ECSE_1466 Escherichia coli SE11 hypothetical protein YP_002292741.1 1536042 D 409438 CDS YP_002292742.1 209918658 6999838 1538678..1538863 1 NC_011415.1 putative lipoprotein 1538863 6999838 ECSE_1467 Escherichia coli SE11 putative lipoprotein YP_002292742.1 1538678 D 409438 CDS YP_002292743.1 209918659 6999839 1538868..1539197 1 NC_011415.1 hypothetical protein 1539197 6999839 ECSE_1468 Escherichia coli SE11 hypothetical protein YP_002292743.1 1538868 D 409438 CDS YP_002292744.1 209918660 6999840 complement(1539369..1540274) 1 NC_011415.1 activator of genes involved in phenylacetic acid catabolism; DNA-binding transcriptional activator FeaR 1540274 6999840 ECSE_1469 Escherichia coli SE11 DNA-binding transcriptional activator FeaR YP_002292744.1 1539369 R 409438 CDS YP_002292745.1 209918661 6999841 1540510..1542009 1 NC_011415.1 phenylacetaldehyde dehydrogenase 1542009 6999841 ECSE_1470 Escherichia coli SE11 phenylacetaldehyde dehydrogenase YP_002292745.1 1540510 D 409438 CDS YP_002292746.1 209918662 6999842 complement(1542067..1544340) 1 NC_011415.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine; tyramine oxidase 1544340 tynA 6999842 tynA Escherichia coli SE11 tyramine oxidase YP_002292746.1 1542067 R 409438 CDS YP_002292747.1 209918663 6999843 complement(1544588..1546633) 1 NC_011415.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase 1546633 6999843 ECSE_1472 Escherichia coli SE11 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase YP_002292747.1 1544588 R 409438 CDS YP_002292748.1 209918664 6999844 1546918..1547847 1 NC_011415.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 1547847 paaA 6999844 paaA Escherichia coli SE11 phenylacetate-CoA oxygenase subunit PaaA YP_002292748.1 1546918 D 409438 CDS YP_002292749.1 209918665 6999845 1547859..1548146 1 NC_011415.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 1548146 paaB 6999845 paaB Escherichia coli SE11 phenylacetate-CoA oxygenase subunit PaaB YP_002292749.1 1547859 D 409438 CDS YP_002292750.1 209918666 6999846 1548155..1548901 1 NC_011415.1 phenylacetic acid degradation protein PaaC 1548901 6999846 ECSE_1475 Escherichia coli SE11 phenylacetic acid degradation protein PaaC YP_002292750.1 1548155 D 409438 CDS YP_002292751.1 209918667 6999847 1548910..1549413 1 NC_011415.1 phenylacetic acid degradation protein PaaD 1549413 6999847 ECSE_1476 Escherichia coli SE11 phenylacetic acid degradation protein PaaD YP_002292751.1 1548910 D 409438 CDS YP_002292752.1 209918668 6999848 1549421..1550491 1 NC_011415.1 phenylacetic acid degradation NADH oxidoreductase PaaE 1550491 6999848 ECSE_1477 Escherichia coli SE11 phenylacetic acid degradation NADH oxidoreductase PaaE YP_002292752.1 1549421 D 409438 CDS YP_002292753.1 209918669 6999849 1550488..1551255 1 NC_011415.1 enoyl-CoA hydratase-isomerase 1551255 6999849 ECSE_1478 Escherichia coli SE11 enoyl-CoA hydratase-isomerase YP_002292753.1 1550488 D 409438 CDS YP_002292754.1 209918670 6999850 1551255..1552043 1 NC_011415.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1552043 6999850 ECSE_1479 Escherichia coli SE11 enoyl-CoA hydratase YP_002292754.1 1551255 D 409438 CDS YP_002292755.1 209918671 6999851 1552045..1553472 1 NC_011415.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase 1553472 6999851 ECSE_1480 Escherichia coli SE11 3-hydroxy-acyl-CoA dehydrogenase YP_002292755.1 1552045 D 409438 CDS YP_002292756.1 209918672 6999852 1553462..1553884 1 NC_011415.1 phenylacetic acid degradation protein PaaI 1553884 6999852 ECSE_1481 Escherichia coli SE11 phenylacetic acid degradation protein PaaI YP_002292756.1 1553462 D 409438 CDS YP_002292757.1 209918673 6999853 1553884..1555089 1 NC_011415.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase 1555089 6999853 ECSE_1482 Escherichia coli SE11 beta-ketoadipyl CoA thiolase YP_002292757.1 1553884 D 409438 CDS YP_002292758.1 209918674 6999854 1555116..1556429 1 NC_011415.1 phenylacetate-CoA ligase PaaK 1556429 6999854 ECSE_1483 Escherichia coli SE11 phenylacetate-CoA ligase PaaK YP_002292758.1 1555116 D 409438 CDS YP_002292759.1 209918675 6999855 1556530..1557480 1 NC_011415.1 transcriptional repressor for phenylacetic acid degradation PaaX 1557480 6999855 ECSE_1484 Escherichia coli SE11 transcriptional repressor for phenylacetic acid degradation PaaX YP_002292759.1 1556530 D 409438 CDS YP_002292760.1 209918676 6999856 1557462..1558052 1 NC_011415.1 phenylacetic acid degradation protein PaaY 1558052 6999856 ECSE_1485 Escherichia coli SE11 phenylacetic acid degradation protein PaaY YP_002292760.1 1557462 D 409438 CDS YP_002292761.1 209918677 6999857 1558284..1559144 1 NC_011415.1 putative oxidoreductase 1559144 6999857 ECSE_1486 Escherichia coli SE11 putative oxidoreductase YP_002292761.1 1558284 D 409438 CDS YP_002292762.1 209918678 6999858 1559208..1561514 1 NC_011415.1 hypothetical protein 1561514 6999858 ECSE_1487 Escherichia coli SE11 hypothetical protein YP_002292762.1 1559208 D 409438 CDS YP_002292763.1 209918679 6999859 1561685..1562290 1 NC_011415.1 hypothetical protein 1562290 6999859 ECSE_1488 Escherichia coli SE11 hypothetical protein YP_002292763.1 1561685 D 409438 CDS YP_002292764.1 209918680 6999860 1562290..1562928 1 NC_011415.1 putative phosphatidate cytidylyltransferase 1562928 6999860 ECSE_1489 Escherichia coli SE11 putative phosphatidate cytidylyltransferase YP_002292764.1 1562290 D 409438 CDS YP_002292765.1 209918681 6999861 complement(1562863..1563240) 1 NC_011415.1 transposase 1563240 6999861 ECSE_1490 Escherichia coli SE11 transposase YP_002292765.1 1562863 R 409438 CDS YP_002292766.1 209918682 6999862 complement(1563285..1563560) 1 NC_011415.1 transposase 1563560 6999862 ECSE_1491 Escherichia coli SE11 transposase YP_002292766.1 1563285 R 409438 CDS YP_002292767.1 209918683 6999863 1563652..1563963 1 NC_011415.1 putative phosphatidate cytidylyltransferase 1563963 6999863 ECSE_1492 Escherichia coli SE11 putative phosphatidate cytidylyltransferase YP_002292767.1 1563652 D 409438 CDS YP_002292768.1 209918684 6999864 1564149..1565735 1 NC_011415.1 hypothetical protein 1565735 6999864 ECSE_1493 Escherichia coli SE11 hypothetical protein YP_002292768.1 1564149 D 409438 CDS YP_002292769.1 209918685 6999865 1565749..1567041 1 NC_011415.1 hypothetical protein 1567041 6999865 ECSE_1494 Escherichia coli SE11 hypothetical protein YP_002292769.1 1565749 D 409438 CDS YP_002292770.1 209918686 6999866 complement(1567092..1567697) 1 NC_011415.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 1567697 6999866 ECSE_1495 Escherichia coli SE11 azoreductase YP_002292770.1 1567092 R 409438 CDS YP_002292771.1 209918687 6999867 1567955..1571800 1 NC_011415.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1571800 6999867 ECSE_1496 Escherichia coli SE11 ATP-dependent RNA helicase HrpA YP_002292771.1 1567955 D 409438 CDS YP_002292772.1 209918688 6999868 1572072..1572872 1 NC_011415.1 hypothetical protein 1572872 6999868 ECSE_1497 Escherichia coli SE11 hypothetical protein YP_002292772.1 1572072 D 409438 CDS YP_002292773.1 209918689 6999869 1573069..1574508 1 NC_011415.1 NAD-linked; aldehyde dehydrogenase A 1574508 6999869 ECSE_1498 Escherichia coli SE11 aldehyde dehydrogenase A YP_002292773.1 1573069 D 409438 CDS YP_002292774.1 209918690 6999870 complement(1574550..1575551) 1 NC_011415.1 glyceraldehyde-3-phosphate dehydrogenase 1575551 6999870 ECSE_1499 Escherichia coli SE11 glyceraldehyde-3-phosphate dehydrogenase YP_002292774.1 1574550 R 409438 CDS YP_002292775.1 209918691 6999871 1575704..1576270 1 NC_011415.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm; cytochrome b561 1576270 6999871 ECSE_1500 Escherichia coli SE11 cytochrome b561 YP_002292775.1 1575704 D 409438 CDS YP_002292776.1 209918692 6999872 1576515..1576688 1 NC_011415.1 hypothetical protein 1576688 6999872 ECSE_1501 Escherichia coli SE11 hypothetical protein YP_002292776.1 1576515 D 409438 CDS YP_002292777.1 209918693 6999873 1576754..1576984 1 NC_011415.1 hypothetical protein 1576984 6999873 ECSE_1502 Escherichia coli SE11 hypothetical protein YP_002292777.1 1576754 D 409438 CDS YP_002292778.1 209918694 6999874 1577308..1578948 1 NC_011415.1 methyl-accepting chemotaxis protein III 1578948 6999874 ECSE_1503 Escherichia coli SE11 methyl-accepting chemotaxis protein III YP_002292778.1 1577308 D 409438 CDS YP_002292779.1 209918695 6999875 complement(1578986..1580050) 1 NC_011415.1 putative transcriptional regulator 1580050 6999875 ECSE_1504 Escherichia coli SE11 putative transcriptional regulator YP_002292779.1 1578986 R 409438 CDS YP_002292780.1 209918696 6999876 1580126..1581469 1 NC_011415.1 hypothetical protein 1581469 6999876 ECSE_1505 Escherichia coli SE11 hypothetical protein YP_002292780.1 1580126 D 409438 CDS YP_002292781.1 209918697 6999877 1581694..1583349 1 NC_011415.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 1583349 mdoD 6999877 mdoD Escherichia coli SE11 glucan biosynthesis protein D YP_002292781.1 1581694 D 409438 CDS YP_002292782.1 209918698 6999878 1583489..1583713 1 NC_011415.1 hypothetical protein 1583713 6999878 ECSE_1507 Escherichia coli SE11 hypothetical protein YP_002292782.1 1583489 D 409438 CDS YP_002292783.1 209918699 6999879 1583776..1584312 1 NC_011415.1 ribosomal-protein-L7/L12-serine acetyltransferase 1584312 6999879 ECSE_1508 Escherichia coli SE11 ribosomal-protein-L7/L12-serine acetyltransferase YP_002292783.1 1583776 D 409438 CDS YP_002292784.1 209918700 6999880 complement(1584307..1585287) 1 NC_011415.1 hypothetical protein 1585287 6999880 ECSE_1509 Escherichia coli SE11 hypothetical protein YP_002292784.1 1584307 R 409438 CDS YP_002292785.1 209918701 6999881 1585411..1586403 1 NC_011415.1 potassium-tellurite ethidium and proflavin transporter 1586403 6999881 ECSE_1510 Escherichia coli SE11 potassium-tellurite ethidium and proflavin transporter YP_002292785.1 1585411 D 409438 CDS YP_002292786.1 209918702 6999882 1586400..1586993 1 NC_011415.1 with TehA confers resistance to tellurite; tellurite resistance protein TehB 1586993 6999882 ECSE_1511 Escherichia coli SE11 tellurite resistance protein TehB YP_002292786.1 1586400 D 409438 CDS YP_002292787.1 209918703 6999883 1587296..1587964 1 NC_011415.1 hypothetical protein 1587964 6999883 ECSE_1512 Escherichia coli SE11 hypothetical protein YP_002292787.1 1587296 D 409438 CDS YP_002292788.1 209918704 6999884 1588491..1589699 1 NC_011415.1 transposase 1589699 6999884 ECSE_1513 Escherichia coli SE11 transposase YP_002292788.1 1588491 D 409438 CDS YP_002292789.1 209918705 6999885 complement(1589739..1590914) 1 NC_011415.1 putative transport protein 1590914 6999885 ECSE_1514 Escherichia coli SE11 putative transport protein YP_002292789.1 1589739 R 409438 CDS YP_002292790.1 209918706 6999886 1591006..1591542 1 NC_011415.1 hypothetical protein 1591542 6999886 ECSE_1515 Escherichia coli SE11 hypothetical protein YP_002292790.1 1591006 D 409438 CDS YP_002292791.1 209918707 6999887 1591573..1593576 1 NC_011415.1 putative protease 1593576 6999887 ECSE_1516 Escherichia coli SE11 putative protease YP_002292791.1 1591573 D 409438 CDS YP_002292792.1 209918708 6999888 complement(1593668..1593898) 1 NC_011415.1 hypothetical protein 1593898 6999888 ECSE_1517 Escherichia coli SE11 hypothetical protein YP_002292792.1 1593668 R 409438 CDS YP_002292793.1 209918709 6999889 complement(1593955..1594077) 1 NC_011415.1 hypothetical protein 1594077 6999889 ECSE_1518 Escherichia coli SE11 hypothetical protein YP_002292793.1 1593955 R 409438 CDS YP_002292794.1 209918710 6999890 complement(1594084..1594281) 1 NC_011415.1 hypothetical protein 1594281 6999890 ECSE_1519 Escherichia coli SE11 hypothetical protein YP_002292794.1 1594084 R 409438 CDS YP_002292795.1 209918711 6999891 1594321..1594758 1 NC_011415.1 hypothetical protein 1594758 6999891 ECSE_1520 Escherichia coli SE11 hypothetical protein YP_002292795.1 1594321 D 409438 CDS YP_002292796.1 209918712 6999892 1594837..1596243 1 NC_011415.1 putative transcriptional regulator 1596243 6999892 ECSE_1521 Escherichia coli SE11 putative transcriptional regulator YP_002292796.1 1594837 D 409438 CDS YP_002292797.1 209918713 6999893 1596488..1597633 1 NC_011415.1 putative ABC transporter substrate binding component 1597633 6999893 ECSE_1522 Escherichia coli SE11 putative ABC transporter substrate binding component YP_002292797.1 1596488 D 409438 CDS YP_002292798.1 209918714 6999894 1597651..1598664 1 NC_011415.1 putative ABC transporter ATP-binding protein 1598664 6999894 ECSE_1523 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002292798.1 1597651 D 409438 CDS YP_002292799.1 209918715 6999895 1598665..1599606 1 NC_011415.1 putative ABC transporter permease 1599606 6999895 ECSE_1524 Escherichia coli SE11 putative ABC transporter permease YP_002292799.1 1598665 D 409438 CDS YP_002292800.1 209918716 6999896 1599596..1600390 1 NC_011415.1 putative ABC transporter permease 1600390 6999896 ECSE_1525 Escherichia coli SE11 putative ABC transporter permease YP_002292800.1 1599596 D 409438 CDS YP_002292801.1 209918717 6999897 1600412..1601836 1 NC_011415.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 1601836 6999897 ECSE_1526 Escherichia coli SE11 gamma-aminobutyraldehyde dehydrogenase YP_002292801.1 1600412 D 409438 CDS YP_002292802.1 209918718 6999898 1602046..1602855 1 NC_011415.1 putative acetyltransferase 1602855 6999898 ECSE_1527 Escherichia coli SE11 putative acetyltransferase YP_002292802.1 1602046 D 409438 CDS YP_002292803.1 209918719 6999899 1603472..1603720 1 NC_011415.1 hypothetical protein 1603720 6999899 ECSE_1528 Escherichia coli SE11 hypothetical protein YP_002292803.1 1603472 D 409438 CDS YP_002292804.1 209918720 6999900 1603806..1604039 1 NC_011415.1 hypothetical protein 1604039 6999900 ECSE_1529 Escherichia coli SE11 hypothetical protein YP_002292804.1 1603806 D 409438 CDS YP_002292805.1 209918721 6999901 complement(1604040..1604489) 1 NC_011415.1 hypothetical protein 1604489 6999901 ECSE_1530 Escherichia coli SE11 hypothetical protein YP_002292805.1 1604040 R 409438 CDS YP_002292806.1 209918722 6999902 complement(1604486..1605004) 1 NC_011415.1 putative acetyltransferase 1605004 6999902 ECSE_1531 Escherichia coli SE11 putative acetyltransferase YP_002292806.1 1604486 R 409438 CDS YP_002292807.1 209918723 6999903 1605161..1606222 1 NC_011415.1 putative oxidoreductase 1606222 6999903 ECSE_1532 Escherichia coli SE11 putative oxidoreductase YP_002292807.1 1605161 D 409438 CDS YP_002292808.1 209918724 6999904 1606363..1607085 1 NC_011415.1 putative DNA-binding transcriptional regulator 1607085 6999904 ECSE_1533 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002292808.1 1606363 D 409438 CDS YP_002292809.1 209918725 6999905 complement(1607121..1609223) 1 NC_011415.1 putative TonB-dependent receptor 1609223 6999905 ECSE_1534 Escherichia coli SE11 putative TonB-dependent receptor YP_002292809.1 1607121 R 409438 CDS YP_002292810.1 209918726 6999906 1609465..1610526 1 NC_011415.1 hypothetical protein 1610526 6999906 ECSE_1535 Escherichia coli SE11 hypothetical protein YP_002292810.1 1609465 D 409438 CDS YP_002292811.1 209918727 6999907 complement(1610641..1612140) 1 NC_011415.1 L-asparagine transport protein 1612140 6999907 ECSE_1536 Escherichia coli SE11 L-asparagine transport protein YP_002292811.1 1610641 R 409438 CDS YP_002292812.1 209918728 6999908 1612407..1613024 1 NC_011415.1 putative transferase 1613024 6999908 ECSE_1537 Escherichia coli SE11 putative transferase YP_002292812.1 1612407 D 409438 CDS YP_002292813.1 209918729 6999909 1613100..1613312 1 NC_011415.1 hypothetical protein 1613312 6999909 ECSE_1538 Escherichia coli SE11 hypothetical protein YP_002292813.1 1613100 D 409438 CDS YP_002292814.1 209918730 6999910 complement(1613725..1613871) 1 NC_011415.1 hypothetical protein 1613871 6999910 ECSE_1539 Escherichia coli SE11 hypothetical protein YP_002292814.1 1613725 R 409438 CDS YP_002292815.1 209918731 6999911 1614133..1616241 1 NC_011415.1 hypothetical protein 1616241 6999911 ECSE_1540 Escherichia coli SE11 hypothetical protein YP_002292815.1 1614133 D 409438 CDS YP_002292816.1 209918732 6999912 1616309..1620517 1 NC_011415.1 Rhs core protein 1620517 6999912 ECSE_1541 Escherichia coli SE11 Rhs core protein YP_002292816.1 1616309 D 409438 CDS YP_002292817.1 209918733 6999913 1620529..1620924 1 NC_011415.1 hypothetical protein 1620924 6999913 ECSE_1542 Escherichia coli SE11 hypothetical protein YP_002292817.1 1620529 D 409438 CDS YP_002292818.1 209918734 6999914 1621511..1622647 1 NC_011415.1 H repeat-associated protein 1622647 6999914 ECSE_1543 Escherichia coli SE11 H repeat-associated protein YP_002292818.1 1621511 D 409438 CDS YP_002292819.1 209918735 6999915 1622747..1623640 1 NC_011415.1 H repeat-associated protein 1623640 6999915 ECSE_1544 Escherichia coli SE11 H repeat-associated protein YP_002292819.1 1622747 D 409438 CDS YP_002292820.1 209918736 6999916 1623670..1624122 1 NC_011415.1 hypothetical protein 1624122 6999916 ECSE_1545 Escherichia coli SE11 hypothetical protein YP_002292820.1 1623670 D 409438 CDS YP_002292821.1 209918737 6999917 1624388..1624582 1 NC_011415.1 hypothetical protein 1624582 6999917 ECSE_1546 Escherichia coli SE11 hypothetical protein YP_002292821.1 1624388 D 409438 CDS YP_002292822.1 209918738 6999918 1624663..1628928 1 NC_011415.1 Rhs core protein 1628928 6999918 ECSE_1547 Escherichia coli SE11 Rhs core protein YP_002292822.1 1624663 D 409438 CDS YP_002292823.1 209918739 6999919 1628940..1629389 1 NC_011415.1 hypothetical protein 1629389 6999919 ECSE_1548 Escherichia coli SE11 hypothetical protein YP_002292823.1 1628940 D 409438 CDS YP_002292824.1 209918740 6999920 1629725..1630441 1 NC_011415.1 H repeat-associated protein 1630441 6999920 ECSE_1549 Escherichia coli SE11 H repeat-associated protein YP_002292824.1 1629725 D 409438 CDS YP_002292825.1 209918741 6999921 1630474..1630701 1 NC_011415.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1630701 6999921 ECSE_1550 Escherichia coli SE11 4-oxalocrotonate tautomerase YP_002292825.1 1630474 D 409438 CDS YP_002292826.1 209918742 6999922 complement(1630705..1631274) 1 NC_011415.1 hypothetical protein 1631274 6999922 ECSE_1551 Escherichia coli SE11 hypothetical protein YP_002292826.1 1630705 R 409438 CDS YP_002292827.1 209918743 6999923 1631447..1632292 1 NC_011415.1 N-hydroxyarylamine O-acetyltransferase 1632292 6999923 ECSE_1552 Escherichia coli SE11 N-hydroxyarylamine O-acetyltransferase YP_002292827.1 1631447 D 409438 CDS YP_002292828.1 209918744 6999924 complement(1632388..1633281) 1 NC_011415.1 hypothetical protein 1633281 6999924 ECSE_1553 Escherichia coli SE11 hypothetical protein YP_002292828.1 1632388 R 409438 CDS YP_002292829.1 209918745 6999925 complement(1633360..1634040) 1 NC_011415.1 cryptic nitrate reductase 2 gamma subunit 1634040 6999925 ECSE_1554 Escherichia coli SE11 cryptic nitrate reductase 2 gamma subunit YP_002292829.1 1633360 R 409438 CDS YP_002292830.1 209918746 6999926 complement(1634037..1634732) 1 NC_011415.1 cryptic nitrate reductase 2 delta subunit 1634732 6999926 ECSE_1555 Escherichia coli SE11 cryptic nitrate reductase 2 delta subunit YP_002292830.1 1634037 R 409438 CDS YP_002292831.1 209918747 6999927 complement(1634732..1636276) 1 NC_011415.1 cryptic nitrate reductase 2 beta subunit 1636276 6999927 ECSE_1556 Escherichia coli SE11 cryptic nitrate reductase 2 beta subunit YP_002292831.1 1634732 R 409438 CDS YP_002292832.1 209918748 6999928 complement(1636273..1640013) 1 NC_011415.1 cryptic nitrate reductase 2 alpha subunit 1640013 6999928 ECSE_1557 Escherichia coli SE11 cryptic nitrate reductase 2 alpha subunit YP_002292832.1 1636273 R 409438 CDS YP_002292833.1 209918749 6999929 complement(1640095..1641483) 1 NC_011415.1 nitrate extrusion protein 1641483 6999929 ECSE_1558 Escherichia coli SE11 nitrate extrusion protein YP_002292833.1 1640095 R 409438 CDS YP_002292834.1 209918750 6999930 complement(1641807..1643102) 1 NC_011415.1 hypothetical protein 1643102 6999930 ECSE_1559 Escherichia coli SE11 hypothetical protein YP_002292834.1 1641807 R 409438 CDS YP_002292835.1 209918751 6999931 complement(1643161..1643451) 1 NC_011415.1 putative outer membrane porin protein 1643451 6999931 ECSE_1560 Escherichia coli SE11 putative outer membrane porin protein YP_002292835.1 1643161 R 409438 CDS YP_002292836.1 209918752 6999932 complement(1643710..1644591) 1 NC_011415.1 hypothetical protein 1644591 6999932 ECSE_1561 Escherichia coli SE11 hypothetical protein YP_002292836.1 1643710 R 409438 CDS YP_002292837.1 209918753 6999933 1644823..1645410 1 NC_011415.1 truncated formate dehydrogenase-N alpha subunit 1645410 6999933 ECSE_1562 Escherichia coli SE11 truncated formate dehydrogenase-N alpha subunit YP_002292837.1 1644823 D 409438 CDS YP_002292838.1 209918754 6999934 1645459..1647870 1 NC_011415.1 truncated formate dehydrogenase-N alpha subunit 1647870 6999934 ECSE_1563 Escherichia coli SE11 truncated formate dehydrogenase-N alpha subunit YP_002292838.1 1645459 D 409438 CDS YP_002292839.1 209918755 6999935 1647883..1648767 1 NC_011415.1 formate dehydrogenase-N beta subunit 1648767 6999935 ECSE_1564 Escherichia coli SE11 formate dehydrogenase-N beta subunit YP_002292839.1 1647883 D 409438 CDS YP_002292840.1 209918756 6999936 1648760..1649413 1 NC_011415.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase; formate dehydrogenase-N subunit gamma 1649413 6999936 ECSE_1565 Escherichia coli SE11 formate dehydrogenase-N subunit gamma YP_002292840.1 1648760 D 409438 CDS YP_002292841.1 209918757 6999937 complement(1649464..1649748) 1 NC_011415.1 hypothetical protein 1649748 6999937 ECSE_1566 Escherichia coli SE11 hypothetical protein YP_002292841.1 1649464 R 409438 CDS YP_002292842.1 209918758 6999938 complement(1649895..1650935) 1 NC_011415.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1650935 6999938 ECSE_1567 Escherichia coli SE11 alcohol dehydrogenase YP_002292842.1 1649895 R 409438 CDS YP_002292843.1 209918759 6999939 complement(1651039..1652763) 1 NC_011415.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1652763 6999939 ECSE_1568 Escherichia coli SE11 malate dehydrogenase YP_002292843.1 1651039 R 409438 CDS YP_002292844.1 209918760 6999940 complement(1652893..1653030) 1 NC_011415.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase; 30S ribosomal subunit S22 1653030 rpsV 6999940 rpsV Escherichia coli SE11 30S ribosomal subunit S22 YP_002292844.1 1652893 R 409438 CDS YP_002292845.1 209918761 6999941 complement(1653132..1653347) 1 NC_011415.1 biofilm-dependent modulation protein 1653347 6999941 ECSE_1570 Escherichia coli SE11 biofilm-dependent modulation protein YP_002292845.1 1653132 R 409438 CDS YP_002292846.1 209918762 6999942 1653514..1653696 1 NC_011415.1 hypothetical protein 1653696 6999942 ECSE_1571 Escherichia coli SE11 hypothetical protein YP_002292846.1 1653514 D 409438 CDS YP_002292847.1 209918763 6999943 1653693..1654124 1 NC_011415.1 osmotically inducible protein 1654124 6999943 ECSE_1572 Escherichia coli SE11 osmotically inducible protein YP_002292847.1 1653693 D 409438 CDS YP_002292848.1 209918764 6999944 complement(1654180..1655106) 1 NC_011415.1 peptide ABC transporter ATP-binding protein 1655106 6999944 ECSE_1573 Escherichia coli SE11 peptide ABC transporter ATP-binding protein YP_002292848.1 1654180 R 409438 CDS YP_002292849.1 209918765 6999945 complement(1655099..1656085) 1 NC_011415.1 peptide ABC transporter ATP-binding protein 1656085 6999945 ECSE_1574 Escherichia coli SE11 peptide ABC transporter ATP-binding protein YP_002292849.1 1655099 R 409438 CDS YP_002292850.1 209918766 6999946 complement(1656082..1656978) 1 NC_011415.1 ATP-dependent peptide transporter membrane subunit 1656978 6999946 ECSE_1575 Escherichia coli SE11 ATP-dependent peptide transporter membrane subunit YP_002292850.1 1656082 R 409438 CDS YP_002292851.1 209918767 6999947 complement(1656975..1657997) 1 NC_011415.1 peptide ABC transporter permease 1657997 6999947 ECSE_1576 Escherichia coli SE11 peptide ABC transporter permease YP_002292851.1 1656975 R 409438 CDS YP_002292852.1 209918768 6999948 complement(1657999..1659549) 1 NC_011415.1 peptide ABC transporter substrate binding component 1659549 6999948 ECSE_1577 Escherichia coli SE11 peptide ABC transporter substrate binding component YP_002292852.1 1657999 R 409438 CDS YP_002292853.1 209918769 6999949 complement(1659563..1660144) 1 NC_011415.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis; D-alanyl-D-alanine dipeptidase 1660144 6999949 ECSE_1578 Escherichia coli SE11 D-alanyl-D-alanine dipeptidase YP_002292853.1 1659563 R 409438 CDS YP_002292854.1 209918770 6999950 complement(1660402..1662825) 1 NC_011415.1 heme-regulated phosphodiesterase with phosphodiesterase activity with cAMP but not with cGMP, bis(p-nitrophenyl) phosphate or p-nitrophenyl phosphate; cAMP phosphodiesterase 1662825 6999950 ECSE_1579 Escherichia coli SE11 cAMP phosphodiesterase YP_002292854.1 1660402 R 409438 CDS YP_002292855.1 209918771 6999951 complement(1662826..1664208) 1 NC_011415.1 hypothetical protein 1664208 6999951 ECSE_1580 Escherichia coli SE11 hypothetical protein YP_002292855.1 1662826 R 409438 CDS YP_002292856.1 209918772 6999952 complement(1664581..1665900) 1 NC_011415.1 hypothetical protein 1665900 6999952 ECSE_1581 Escherichia coli SE11 hypothetical protein YP_002292856.1 1664581 R 409438 CDS YP_002292857.1 209918773 6999953 complement(1666031..1667566) 1 NC_011415.1 amino acid antiporter 1667566 6999953 ECSE_1582 Escherichia coli SE11 amino acid antiporter YP_002292857.1 1666031 R 409438 CDS YP_002292858.1 209918774 6999954 complement(1667722..1669122) 1 NC_011415.1 glutamate decarboxylase isozyme 1669122 6999954 ECSE_1583 Escherichia coli SE11 glutamate decarboxylase isozyme YP_002292858.1 1667722 R 409438 CDS YP_002292859.1 209918775 6999955 complement(1669484..1672279) 1 NC_011415.1 putative peptidase 1672279 6999955 ECSE_1584 Escherichia coli SE11 putative peptidase YP_002292859.1 1669484 R 409438 CDS YP_002292860.1 209918776 6999956 complement(1672324..1674696) 1 NC_011415.1 hypothetical protein 1674696 6999956 ECSE_1585 Escherichia coli SE11 hypothetical protein YP_002292860.1 1672324 R 409438 CDS YP_002292861.1 209918777 6999957 complement(1674734..1676419) 1 NC_011415.1 putative ABC transporter ATP-binding protein 1676419 6999957 ECSE_1586 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002292861.1 1674734 R 409438 CDS YP_002292862.1 209918778 6999958 complement(1676710..1677867) 1 NC_011415.1 hypothetical protein 1677867 6999958 ECSE_1587 Escherichia coli SE11 hypothetical protein YP_002292862.1 1676710 R 409438 CDS YP_002292863.1 209918779 6999959 complement(1677919..1679601) 1 NC_011415.1 putative sulfatase 1679601 6999959 ECSE_1588 Escherichia coli SE11 putative sulfatase YP_002292863.1 1677919 R 409438 CDS YP_002292864.1 209918780 6999960 complement(1680003..1680764) 1 NC_011415.1 regulates the cellular response to acid resistance; transcriptional regulator YdeO 1680764 6999960 ECSE_1589 Escherichia coli SE11 transcriptional regulator YdeO YP_002292864.1 1680003 R 409438 CDS YP_002292865.1 209918781 6999961 complement(1680839..1681036) 1 NC_011415.1 hypothetical protein 1681036 6999961 ECSE_1590 Escherichia coli SE11 hypothetical protein YP_002292865.1 1680839 R 409438 CDS YP_002292866.1 209918782 6999962 complement(1681284..1683563) 1 NC_011415.1 in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell; involved with increased resistance to low pH; member of the prokaryotic molybdopterin-containing oxidoreductase family; putative oxidoreductase 1683563 6999962 ECSE_1591 Escherichia coli SE11 putative oxidoreductase YP_002292866.1 1681284 R 409438 CDS YP_002292867.1 209918783 6999963 complement(1683897..1684811) 1 NC_011415.1 putative fimbrial protein 1684811 6999963 ECSE_1592 Escherichia coli SE11 putative fimbrial protein YP_002292867.1 1683897 R 409438 CDS YP_002292868.1 209918784 6999964 complement(1684870..1685373) 1 NC_011415.1 putative fimbrial protein 1685373 6999964 ECSE_1593 Escherichia coli SE11 putative fimbrial protein YP_002292868.1 1684870 R 409438 CDS YP_002292869.1 209918785 6999965 complement(1685386..1685916) 1 NC_011415.1 putative fimbrial protein 1685916 6999965 ECSE_1594 Escherichia coli SE11 putative fimbrial protein YP_002292869.1 1685386 R 409438 CDS YP_002292870.1 209918786 6999966 complement(1685930..1688581) 1 NC_011415.1 putative fimbrial usher protein 1688581 6999966 ECSE_1595 Escherichia coli SE11 putative fimbrial usher protein YP_002292870.1 1685930 R 409438 CDS YP_002292871.1 209918787 6999967 complement(1688623..1689333) 1 NC_011415.1 putative fimbrial chaperone 1689333 6999967 ECSE_1596 Escherichia coli SE11 putative fimbrial chaperone YP_002292871.1 1688623 R 409438 CDS YP_002292872.1 209918788 6999968 complement(1689694..1690257) 1 NC_011415.1 putative fimbrial protein 1690257 6999968 ECSE_1597 Escherichia coli SE11 putative fimbrial protein YP_002292872.1 1689694 R 409438 CDS YP_002292873.1 209918789 6999969 complement(1691211..1692533) 1 NC_011415.1 transcriptional repressor 1692533 6999969 ECSE_1598 Escherichia coli SE11 transcriptional repressor YP_002292873.1 1691211 R 409438 CDS YP_002292874.1 209918790 6999970 complement(1692533..1692799) 1 NC_011415.1 DNA-binding transcriptional regulator HipB 1692799 6999970 ECSE_1599 Escherichia coli SE11 DNA-binding transcriptional regulator HipB YP_002292874.1 1692533 R 409438 CDS YP_002292875.1 209918791 6999971 complement(1693008..1698428) 1 NC_011415.1 putative lipoprotein/autotransporter domain-containing protein 1698428 6999971 ECSE_1600 Escherichia coli SE11 putative lipoprotein/autotransporter domain-containing protein YP_002292875.1 1693008 R 409438 CDS YP_002292876.1 209918792 6999972 complement(1698959..1700551) 1 NC_011415.1 autoinducer-2 (AI-2) kinase 1700551 6999972 ECSE_1601 Escherichia coli SE11 autoinducer-2 (AI-2) kinase YP_002292876.1 1698959 R 409438 CDS YP_002292877.1 209918793 6999973 complement(1700630..1701583) 1 NC_011415.1 putative transcriptional regulator 1701583 6999973 ECSE_1602 Escherichia coli SE11 putative transcriptional regulator YP_002292877.1 1700630 R 409438 CDS YP_002292878.1 209918794 6999974 1701832..1703367 1 NC_011415.1 putative ABC transporter ATP-binding protein 1703367 6999974 ECSE_1603 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002292878.1 1701832 D 409438 CDS YP_002292879.1 209918795 6999975 1703361..1704389 1 NC_011415.1 putative ABC transporter permease 1704389 6999975 ECSE_1604 Escherichia coli SE11 putative ABC transporter permease YP_002292879.1 1703361 D 409438 CDS YP_002292880.1 209918796 6999976 1704389..1705381 1 NC_011415.1 putative ABC transporter permease 1705381 6999976 ECSE_1605 Escherichia coli SE11 putative ABC transporter permease YP_002292880.1 1704389 D 409438 CDS YP_002292881.1 209918797 6999977 1705393..1706415 1 NC_011415.1 putative transcriptional regulator 1706415 6999977 ECSE_1606 Escherichia coli SE11 putative transcriptional regulator YP_002292881.1 1705393 D 409438 CDS YP_002292882.1 209918798 6999978 1706442..1707317 1 NC_011415.1 aldolase 1707317 6999978 ECSE_1607 Escherichia coli SE11 aldolase YP_002292882.1 1706442 D 409438 CDS YP_002292883.1 209918799 6999979 1707341..1707631 1 NC_011415.1 autoinducer-2 (AI-2) modifying protein LsrG 1707631 6999979 ECSE_1608 Escherichia coli SE11 autoinducer-2 (AI-2) modifying protein LsrG YP_002292883.1 1707341 D 409438 CDS YP_002292884.1 209918800 6999980 1707688..1708446 1 NC_011415.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 1708446 6999980 ECSE_1609 Escherichia coli SE11 trans-aconitate 2-methyltransferase YP_002292884.1 1707688 D 409438 CDS YP_002292885.1 209918801 6999981 complement(1708450..1709415) 1 NC_011415.1 hypothetical protein 1709415 6999981 ECSE_1610 Escherichia coli SE11 hypothetical protein YP_002292885.1 1708450 R 409438 CDS YP_002292886.1 209918802 6999982 complement(1709571..1711022) 1 NC_011415.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 1711022 6999982 ECSE_1611 Escherichia coli SE11 altronate oxidoreductase YP_002292886.1 1709571 R 409438 CDS YP_002292887.1 209918803 6999983 complement(1711249..1712196) 1 NC_011415.1 hypothetical protein 1712196 6999983 ECSE_1612 Escherichia coli SE11 hypothetical protein YP_002292887.1 1711249 R 409438 CDS YP_002292888.1 209918804 6999984 complement(1712806..1713165) 1 NC_011415.1 hypothetical protein 1713165 6999984 ECSE_1613 Escherichia coli SE11 hypothetical protein YP_002292888.1 1712806 R 409438 CDS YP_002292889.1 209918805 6999985 complement(1713165..1714091) 1 NC_011415.1 catalyzes the formation of glutamate from glutamine; glutaminase 1714091 6999985 ECSE_1614 Escherichia coli SE11 glutaminase YP_002292889.1 1713165 R 409438 CDS YP_002292890.1 209918806 6999986 complement(1714155..1715543) 1 NC_011415.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase; putative succinate semialdehyde dehydrogenase 1715543 6999986 ECSE_1615 Escherichia coli SE11 putative succinate semialdehyde dehydrogenase YP_002292890.1 1714155 R 409438 CDS YP_002292891.1 209918807 6999987 1715644..1716525 1 NC_011415.1 putative transcriptional regulator 1716525 6999987 ECSE_1616 Escherichia coli SE11 putative transcriptional regulator YP_002292891.1 1715644 D 409438 CDS YP_002292892.1 209918808 6999988 1716602..1717717 1 NC_011415.1 hypothetical protein 1717717 6999988 ECSE_1617 Escherichia coli SE11 hypothetical protein YP_002292892.1 1716602 D 409438 CDS YP_002292893.1 209918809 6999989 1717867..1719057 1 NC_011415.1 sugar efflux transporter 1719057 6999989 ECSE_1618 Escherichia coli SE11 sugar efflux transporter YP_002292893.1 1717867 D 409438 CDS YP_002292894.1 209918810 6999990 complement(1719082..1719747) 1 NC_011415.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function; multiple drug resistance protein MarC 1719747 6999990 ECSE_1619 Escherichia coli SE11 multiple drug resistance protein MarC YP_002292894.1 1719082 R 409438 CDS YP_002292895.1 209918811 6999991 1719959..1720393 1 NC_011415.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes; DNA-binding transcriptional repressor MarR 1720393 6999991 ECSE_1620 Escherichia coli SE11 DNA-binding transcriptional repressor MarR YP_002292895.1 1719959 D 409438 CDS YP_002292896.1 209918812 6999992 1720413..1720796 1 NC_011415.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF; DNA-binding transcriptional activator MarA 1720796 6999992 ECSE_1621 Escherichia coli SE11 DNA-binding transcriptional activator MarA YP_002292896.1 1720413 D 409438 CDS YP_002292897.1 209918813 6999993 1720828..1721046 1 NC_011415.1 hypothetical protein 1721046 6999993 ECSE_1622 Escherichia coli SE11 hypothetical protein YP_002292897.1 1720828 D 409438 CDS YP_002292898.1 209918814 6999994 complement(1721103..1722542) 1 NC_011415.1 converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism; 6-phospho-beta-glucosidase 1722542 celA 6999994 celA Escherichia coli SE11 6-phospho-beta-glucosidase YP_002292898.1 1721103 R 409438 CDS YP_002292899.1 209918815 6999995 complement(1722567..1724240) 1 NC_011415.1 hypothetical protein 1724240 6999995 ECSE_1624 Escherichia coli SE11 hypothetical protein YP_002292899.1 1722567 R 409438 CDS YP_002292900.1 209918816 6999996 complement(1724296..1724610) 1 NC_011415.1 PTS system cellobiose-specific IIA component 1724610 6999996 ECSE_1625 Escherichia coli SE11 PTS system cellobiose-specific IIA component YP_002292900.1 1724296 R 409438 CDS YP_002292901.1 209918817 6999997 complement(1724635..1725957) 1 NC_011415.1 PTS system cellobiose-specific IIC component 1725957 6999997 ECSE_1626 Escherichia coli SE11 PTS system cellobiose-specific IIC component YP_002292901.1 1724635 R 409438 CDS YP_002292902.1 209918818 6999998 complement(1726072..1726383) 1 NC_011415.1 PTS system cellobiose-specific IIB component 1726383 6999998 ECSE_1627 Escherichia coli SE11 PTS system cellobiose-specific IIB component YP_002292902.1 1726072 R 409438 CDS YP_002292903.1 209918819 6999999 1726582..1727280 1 NC_011415.1 putative transcriptional regulator 1727280 6999999 ECSE_1628 Escherichia coli SE11 putative transcriptional regulator YP_002292903.1 1726582 D 409438 CDS YP_002292904.1 209918820 7000000 complement(1727325..1728224) 1 NC_011415.1 O-acetylserine/cysteine export protein 1728224 7000000 ECSE_1629 Escherichia coli SE11 O-acetylserine/cysteine export protein YP_002292904.1 1727325 R 409438 CDS YP_002292905.1 209918821 7000001 1728419..1729606 1 NC_011415.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters; putative MFS-type transporter YdeE 1729606 7000001 ECSE_1630 Escherichia coli SE11 putative MFS-type transporter YdeE YP_002292905.1 1728419 D 409438 CDS YP_002292906.1 209918822 7000002 complement(1730047..1730937) 1 NC_011415.1 hypothetical protein 1730937 7000002 ECSE_1631 Escherichia coli SE11 hypothetical protein YP_002292906.1 1730047 R 409438 CDS YP_002292907.1 209918823 7000003 complement(1731192..1731584) 1 NC_011415.1 hypothetical protein 1731584 7000003 ECSE_1632 Escherichia coli SE11 hypothetical protein YP_002292907.1 1731192 R 409438 CDS YP_002292908.1 209918824 7000004 1731860..1732378 1 NC_011415.1 competence damage-inducible protein A 1732378 7000004 ECSE_1633 Escherichia coli SE11 competence damage-inducible protein A YP_002292908.1 1731860 D 409438 CDS YP_002292909.1 209918825 7000005 complement(1732423..1734468) 1 NC_011415.1 dipeptidyl carboxypeptidase II 1734468 7000005 ECSE_1634 Escherichia coli SE11 dipeptidyl carboxypeptidase II YP_002292909.1 1732423 R 409438 CDS YP_002292910.1 209918826 7000006 1734605..1735351 1 NC_011415.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine; 3-hydroxy acid dehydrogenase 1735351 7000006 ECSE_1635 Escherichia coli SE11 3-hydroxy acid dehydrogenase YP_002292910.1 1734605 D 409438 CDS YP_002292911.1 209918827 7000007 1735440..1736126 1 NC_011415.1 putative transcriptional repressor 1736126 7000007 ECSE_1636 Escherichia coli SE11 putative transcriptional repressor YP_002292911.1 1735440 D 409438 CDS YP_002292912.1 209918828 7000008 1736304..1736507 1 NC_011415.1 hypothetical protein 1736507 7000008 ECSE_1637 Escherichia coli SE11 hypothetical protein YP_002292912.1 1736304 D 409438 CDS YP_002292913.1 209918829 7000009 complement(1736543..1738003) 1 NC_011415.1 putative oxidoreductase 1738003 7000009 ECSE_1638 Escherichia coli SE11 putative oxidoreductase YP_002292913.1 1736543 R 409438 CDS YP_002292914.1 209918830 7000010 complement(1738092..1739375) 1 NC_011415.1 putative transport protein 1739375 7000010 ECSE_1639 Escherichia coli SE11 putative transport protein YP_002292914.1 1738092 R 409438 CDS YP_002292915.1 209918831 7000011 complement(1739721..1740293) 1 NC_011415.1 hypothetical protein 1740293 7000011 ECSE_1640 Escherichia coli SE11 hypothetical protein YP_002292915.1 1739721 R 409438 CDS YP_002292916.1 209918832 7000012 complement(1740294..1742066) 1 NC_011415.1 putative phage tail fiber protein 1742066 7000012 ECSE_1641 Escherichia coli SE11 putative phage tail fiber protein YP_002292916.1 1740294 R 409438 CDS YP_002292917.1 209918833 7000013 complement(1742530..1745358) 1 NC_011415.1 putative phage tail fiber protein 1745358 7000013 ECSE_1642 Escherichia coli SE11 putative phage tail fiber protein YP_002292917.1 1742530 R 409438 CDS YP_002292918.1 209918834 7000014 complement(1745423..1746022) 1 NC_011415.1 putative phage outer membrane protein 1746022 7000014 ECSE_1643 Escherichia coli SE11 putative phage outer membrane protein YP_002292918.1 1745423 R 409438 CDS YP_002292919.1 209918835 7000015 complement(1746090..1749569) 1 NC_011415.1 putative phage tail component 1749569 7000015 ECSE_1644 Escherichia coli SE11 putative phage tail component YP_002292919.1 1746090 R 409438 CDS YP_002292920.1 209918836 7000016 complement(1749630..1750262) 1 NC_011415.1 putative phage tail component 1750262 7000016 ECSE_1645 Escherichia coli SE11 putative phage tail component YP_002292920.1 1749630 R 409438 CDS YP_002292921.1 209918837 7000017 complement(1750199..1750942) 1 NC_011415.1 putative phage tail assembly protein 1750942 7000017 ECSE_1646 Escherichia coli SE11 putative phage tail assembly protein YP_002292921.1 1750199 R 409438 CDS YP_002292922.1 209918838 7000018 complement(1750948..1751646) 1 NC_011415.1 putative phage minor tail protein 1751646 7000018 ECSE_1647 Escherichia coli SE11 putative phage minor tail protein YP_002292922.1 1750948 R 409438 CDS YP_002292923.1 209918839 7000019 complement(1751646..1751975) 1 NC_011415.1 putative phage minor tail protein 1751975 7000019 ECSE_1648 Escherichia coli SE11 putative phage minor tail protein YP_002292923.1 1751646 R 409438 CDS YP_002292924.1 209918840 7000020 complement(1751972..1754533) 1 NC_011415.1 putative phage tail component 1754533 7000020 ECSE_1649 Escherichia coli SE11 putative phage tail component YP_002292924.1 1751972 R 409438 CDS YP_002292925.1 209918841 7000021 complement(1754526..1754960) 1 NC_011415.1 putative phage tail component 1754960 7000021 ECSE_1650 Escherichia coli SE11 putative phage tail component YP_002292925.1 1754526 R 409438 CDS YP_002292926.1 209918842 7000022 complement(1754942..1755364) 1 NC_011415.1 putative phage tail component 1755364 7000022 ECSE_1651 Escherichia coli SE11 putative phage tail component YP_002292926.1 1754942 R 409438 CDS YP_002292927.1 209918843 7000023 complement(1755380..1756120) 1 NC_011415.1 putative phage tail component 1756120 7000023 ECSE_1652 Escherichia coli SE11 putative phage tail component YP_002292927.1 1755380 R 409438 CDS YP_002292928.1 209918844 7000024 complement(1756128..1756523) 1 NC_011415.1 putative phage tail component 1756523 7000024 ECSE_1653 Escherichia coli SE11 putative phage tail component YP_002292928.1 1756128 R 409438 CDS YP_002292929.1 209918845 7000025 complement(1756520..1757098) 1 NC_011415.1 putative phage minor tail protein 1757098 7000025 ECSE_1654 Escherichia coli SE11 putative phage minor tail protein YP_002292929.1 1756520 R 409438 CDS YP_002292930.1 209918846 7000026 complement(1757110..1757463) 1 NC_011415.1 putative phage head-tail joining protein 1757463 7000026 ECSE_1655 Escherichia coli SE11 putative phage head-tail joining protein YP_002292930.1 1757110 R 409438 CDS YP_002292931.1 209918847 7000027 complement(1757475..1757876) 1 NC_011415.1 putative phage DNA-packaging protein 1757876 7000027 ECSE_1656 Escherichia coli SE11 putative phage DNA-packaging protein YP_002292931.1 1757475 R 409438 CDS YP_002292932.1 209918848 7000028 complement(1757927..1758955) 1 NC_011415.1 putative phage major capsid protein 1758955 7000028 ECSE_1657 Escherichia coli SE11 putative phage major capsid protein YP_002292932.1 1757927 R 409438 CDS YP_002292933.1 209918849 7000029 complement(1759028..1759372) 1 NC_011415.1 putative phage head decoration protein 1759372 7000029 ECSE_1658 Escherichia coli SE11 putative phage head decoration protein YP_002292933.1 1759028 R 409438 CDS YP_002292934.1 209918850 7000030 complement(1759387..1760886) 1 NC_011415.1 putative phage capsid assembly protein 1760886 7000030 ECSE_1659 Escherichia coli SE11 putative phage capsid assembly protein YP_002292934.1 1759387 R 409438 CDS YP_002292935.1 209918851 7000031 complement(1760876..1762468) 1 NC_011415.1 putative phage capsid assembly protein 1762468 7000031 ECSE_1660 Escherichia coli SE11 putative phage capsid assembly protein YP_002292935.1 1760876 R 409438 CDS YP_002292936.1 209918852 7000032 complement(1762465..1762671) 1 NC_011415.1 putative phage head completion protein 1762671 7000032 ECSE_1661 Escherichia coli SE11 putative phage head completion protein YP_002292936.1 1762465 R 409438 CDS YP_002292937.1 209918853 7000033 complement(1762658..1764586) 1 NC_011415.1 putative phage DNA packaging protein 1764586 7000033 ECSE_1662 Escherichia coli SE11 putative phage DNA packaging protein YP_002292937.1 1762658 R 409438 CDS YP_002292938.1 209918854 7000034 complement(1764555..1765166) 1 NC_011415.1 putative phage DNA packaging protein 1765166 7000034 ECSE_1663 Escherichia coli SE11 putative phage DNA packaging protein YP_002292938.1 1764555 R 409438 CDS YP_002292939.1 209918855 7000035 complement(1765340..1765525) 1 NC_011415.1 hypothetical protein 1765525 7000035 ECSE_1664 Escherichia coli SE11 hypothetical protein YP_002292939.1 1765340 R 409438 CDS YP_002292940.1 209918856 7000036 complement(1765706..1766014) 1 NC_011415.1 hypothetical protein 1766014 7000036 ECSE_1665 Escherichia coli SE11 hypothetical protein YP_002292940.1 1765706 R 409438 CDS YP_002292941.1 209918857 7000037 complement(1766155..1766409) 1 NC_011415.1 hypothetical protein 1766409 7000037 ECSE_1666 Escherichia coli SE11 hypothetical protein YP_002292941.1 1766155 R 409438 CDS YP_002292942.1 209918858 7000038 complement(1766352..1766729) 1 NC_011415.1 putative phage endolysin 1766729 7000038 ECSE_1667 Escherichia coli SE11 putative phage endolysin YP_002292942.1 1766352 R 409438 CDS YP_002292943.1 209918859 7000039 complement(1766735..1767010) 1 NC_011415.1 putative phage holin 1767010 7000039 ECSE_1668 Escherichia coli SE11 putative phage holin YP_002292943.1 1766735 R 409438 CDS YP_002292944.1 209918860 7000040 complement(1767000..1767434) 1 NC_011415.1 putative phage holin 1767434 7000040 ECSE_1669 Escherichia coli SE11 putative phage holin YP_002292944.1 1767000 R 409438 CDS YP_002292945.1 209918861 7000041 complement(1767480..1767632) 1 NC_011415.1 hypothetical protein 1767632 7000041 ECSE_1670 Escherichia coli SE11 hypothetical protein YP_002292945.1 1767480 R 409438 CDS YP_002292946.1 209918862 7000042 complement(1767629..1768054) 1 NC_011415.1 hypothetical protein 1768054 7000042 ECSE_1671 Escherichia coli SE11 hypothetical protein YP_002292946.1 1767629 R 409438 CDS YP_002292947.1 209918863 7000043 complement(1768477..1768626) 1 NC_011415.1 hypothetical protein 1768626 7000043 ECSE_1672 Escherichia coli SE11 hypothetical protein YP_002292947.1 1768477 R 409438 CDS YP_002292948.1 209918864 7000044 complement(1769142..1769543) 1 NC_011415.1 hypothetical protein 1769543 7000044 ECSE_1673 Escherichia coli SE11 hypothetical protein YP_002292948.1 1769142 R 409438 CDS YP_002292949.1 209918865 7000045 complement(1769737..1770426) 1 NC_011415.1 putative phage antitermination protein 1770426 7000045 ECSE_1674 Escherichia coli SE11 putative phage antitermination protein YP_002292949.1 1769737 R 409438 CDS YP_002292950.1 209918866 7000046 complement(1770423..1770788) 1 NC_011415.1 putative phage crossover junction endodeoxyribonuclease 1770788 7000046 ECSE_1675 Escherichia coli SE11 putative phage crossover junction endodeoxyribonuclease YP_002292950.1 1770423 R 409438 CDS YP_002292951.1 209918867 7000047 complement(1770789..1771847) 1 NC_011415.1 hypothetical protein 1771847 7000047 ECSE_1676 Escherichia coli SE11 hypothetical protein YP_002292951.1 1770789 R 409438 CDS YP_002292952.1 209918868 7000048 complement(1771849..1772121) 1 NC_011415.1 hypothetical protein 1772121 7000048 ECSE_1677 Escherichia coli SE11 hypothetical protein YP_002292952.1 1771849 R 409438 CDS YP_002292953.1 209918869 7000049 complement(1772288..1772500) 1 NC_011415.1 hypothetical protein 1772500 7000049 ECSE_1678 Escherichia coli SE11 hypothetical protein YP_002292953.1 1772288 R 409438 CDS YP_002292954.1 209918870 7000050 complement(1772733..1773320) 1 NC_011415.1 hypothetical protein 1773320 7000050 ECSE_1679 Escherichia coli SE11 hypothetical protein YP_002292954.1 1772733 R 409438 CDS YP_002292955.1 209918871 7000051 complement(1773320..1773733) 1 NC_011415.1 hypothetical protein 1773733 7000051 ECSE_1680 Escherichia coli SE11 hypothetical protein YP_002292955.1 1773320 R 409438 CDS YP_002292956.1 209918872 7000052 complement(1774118..1774336) 1 NC_011415.1 hypothetical protein 1774336 7000052 ECSE_1681 Escherichia coli SE11 hypothetical protein YP_002292956.1 1774118 R 409438 CDS YP_002292957.1 209918873 7000053 complement(1774369..1774581) 1 NC_011415.1 hypothetical protein 1774581 7000053 ECSE_1682 Escherichia coli SE11 hypothetical protein YP_002292957.1 1774369 R 409438 CDS YP_002292958.1 209918874 7000054 complement(1774632..1775030) 1 NC_011415.1 hypothetical protein 1775030 7000054 ECSE_1683 Escherichia coli SE11 hypothetical protein YP_002292958.1 1774632 R 409438 CDS YP_002292959.1 209918875 7000055 complement(1774990..1775547) 1 NC_011415.1 hypothetical protein 1775547 7000055 ECSE_1684 Escherichia coli SE11 hypothetical protein YP_002292959.1 1774990 R 409438 CDS YP_002292960.1 209918876 7000056 complement(1775534..1775821) 1 NC_011415.1 hypothetical protein 1775821 7000056 ECSE_1685 Escherichia coli SE11 hypothetical protein YP_002292960.1 1775534 R 409438 CDS YP_002292961.1 209918877 7000057 complement(1775818..1776114) 1 NC_011415.1 hypothetical protein 1776114 7000057 ECSE_1686 Escherichia coli SE11 hypothetical protein YP_002292961.1 1775818 R 409438 CDS YP_002292962.1 209918878 7000058 complement(1776111..1776533) 1 NC_011415.1 hypothetical protein 1776533 7000058 ECSE_1687 Escherichia coli SE11 hypothetical protein YP_002292962.1 1776111 R 409438 CDS YP_002292963.1 209918879 7000059 complement(1776574..1777794) 1 NC_011415.1 hypothetical protein 1777794 7000059 ECSE_1688 Escherichia coli SE11 hypothetical protein YP_002292963.1 1776574 R 409438 CDS YP_002292964.1 209918880 7000060 complement(1777901..1778461) 1 NC_011415.1 hypothetical protein 1778461 7000060 ECSE_1689 Escherichia coli SE11 hypothetical protein YP_002292964.1 1777901 R 409438 CDS YP_002292965.1 209918881 7000061 complement(1778424..1778849) 1 NC_011415.1 hypothetical protein 1778849 7000061 ECSE_1690 Escherichia coli SE11 hypothetical protein YP_002292965.1 1778424 R 409438 CDS YP_002292966.1 209918882 7000062 1779170..1779817 1 NC_011415.1 putative phage repressor 1779817 7000062 ECSE_1691 Escherichia coli SE11 putative phage repressor YP_002292966.1 1779170 D 409438 CDS YP_002292967.1 209918883 7000063 1780014..1780250 1 NC_011415.1 hypothetical protein 1780250 7000063 ECSE_1692 Escherichia coli SE11 hypothetical protein YP_002292967.1 1780014 D 409438 CDS YP_002292968.1 209918884 7000064 1780243..1780380 1 NC_011415.1 hypothetical protein 1780380 7000064 ECSE_1693 Escherichia coli SE11 hypothetical protein YP_002292968.1 1780243 D 409438 CDS YP_002292969.1 209918885 7000065 1780410..1780628 1 NC_011415.1 hypothetical protein 1780628 7000065 ECSE_1694 Escherichia coli SE11 hypothetical protein YP_002292969.1 1780410 D 409438 CDS YP_002292970.1 209918886 7000066 complement(1780811..1781167) 1 NC_011415.1 hypothetical protein 1781167 7000066 ECSE_1695 Escherichia coli SE11 hypothetical protein YP_002292970.1 1780811 R 409438 CDS YP_002292971.1 209918887 7000067 1781553..1781837 1 NC_011415.1 hypothetical protein 1781837 7000067 ECSE_1696 Escherichia coli SE11 hypothetical protein YP_002292971.1 1781553 D 409438 CDS YP_002292972.1 209918888 7000068 1781834..1782037 1 NC_011415.1 hypothetical protein 1782037 7000068 ECSE_1697 Escherichia coli SE11 hypothetical protein YP_002292972.1 1781834 D 409438 CDS YP_002292973.1 209918889 7000069 1782115..1784574 1 NC_011415.1 phage exodeoxyribonuclease 1784574 7000069 ECSE_1698 Escherichia coli SE11 phage exodeoxyribonuclease YP_002292973.1 1782115 D 409438 CDS YP_002292974.1 209918890 7000070 1784644..1784895 1 NC_011415.1 phage excisionase 1784895 7000070 ECSE_1699 Escherichia coli SE11 phage excisionase YP_002292974.1 1784644 D 409438 CDS YP_002292975.1 209918891 7000071 1784915..1786210 1 NC_011415.1 putative phage integrase 1786210 7000071 ECSE_1700 Escherichia coli SE11 putative phage integrase YP_002292975.1 1784915 D 409438 CDS YP_002292976.1 209918892 7000079 complement(1786398..1787417) 1 NC_011415.1 putative dehydrogenase 1787417 7000079 ECSE_1701 Escherichia coli SE11 putative dehydrogenase YP_002292976.1 1786398 R 409438 CDS YP_002292977.1 209918893 7000080 complement(1787429..1788643) 1 NC_011415.1 starvation sensing protein 1788643 7000080 ECSE_1702 Escherichia coli SE11 starvation sensing protein YP_002292977.1 1787429 R 409438 CDS YP_002292978.1 209918894 7000081 complement(1788849..1789175) 1 NC_011415.1 hypothetical protein 1789175 7000081 ECSE_1703 Escherichia coli SE11 hypothetical protein YP_002292978.1 1788849 R 409438 CDS YP_002292979.1 209918895 7000082 1789310..1789651 1 NC_011415.1 hypothetical protein 1789651 7000082 ECSE_1704 Escherichia coli SE11 hypothetical protein YP_002292979.1 1789310 D 409438 CDS YP_002292980.1 209918896 7000083 1789686..1790246 1 NC_011415.1 spermidine N1-acetyltransferase 1790246 7000083 ECSE_1705 Escherichia coli SE11 spermidine N1-acetyltransferase YP_002292980.1 1789686 D 409438 CDS YP_002292981.1 209918897 7000084 complement(1790249..1790959) 1 NC_011415.1 hypothetical protein 1790959 7000084 ECSE_1706 Escherichia coli SE11 hypothetical protein YP_002292981.1 1790249 R 409438 CDS YP_002292982.1 209918898 7000085 1791064..1791372 1 NC_011415.1 hypothetical protein 1791372 7000085 ECSE_1707 Escherichia coli SE11 hypothetical protein YP_002292982.1 1791064 D 409438 CDS YP_002292983.1 209918899 7000086 1791571..1793997 1 NC_011415.1 putative dimethyl sulfoxide reductase major subunit 1793997 7000086 ECSE_1708 Escherichia coli SE11 putative dimethyl sulfoxide reductase major subunit YP_002292983.1 1791571 D 409438 CDS YP_002292984.1 209918900 7000087 1794055..1796481 1 NC_011415.1 putative dimethyl sulfoxide reductase major subunit 1796481 7000087 ECSE_1709 Escherichia coli SE11 putative dimethyl sulfoxide reductase major subunit YP_002292984.1 1794055 D 409438 CDS YP_002292985.1 209918901 7000088 1796492..1797109 1 NC_011415.1 putative dimethyl sulfoxide reductase Fe-S subunit 1797109 7000088 ECSE_1710 Escherichia coli SE11 putative dimethyl sulfoxide reductase Fe-S subunit YP_002292985.1 1796492 D 409438 CDS YP_002292986.1 209918902 7000089 1797111..1797965 1 NC_011415.1 putative dimethyl sulfoxide reductase anchor subunit 1797965 7000089 ECSE_1711 Escherichia coli SE11 putative dimethyl sulfoxide reductase anchor subunit YP_002292986.1 1797111 D 409438 CDS YP_002292987.1 209918903 7000090 1798008..1798622 1 NC_011415.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 1798622 7000090 ECSE_1712 Escherichia coli SE11 twin-argninine leader-binding protein DmsD YP_002292987.1 1798008 D 409438 CDS YP_002292988.1 209918904 7000091 1798757..1800073 1 NC_011415.1 putative voltage-gated ClC-type chloride channel ClcB 1800073 7000091 ECSE_1713 Escherichia coli SE11 putative voltage-gated ClC-type chloride channel ClcB YP_002292988.1 1798757 D 409438 CDS YP_002292989.1 209918905 7000092 complement(1800026..1800721) 1 NC_011415.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; putative dithiobiotin synthetase 1800721 7000092 ECSE_1714 Escherichia coli SE11 putative dithiobiotin synthetase YP_002292989.1 1800026 R 409438 CDS YP_002292990.1 209918906 7000093 complement(1800846..1802066) 1 NC_011415.1 putative transcriptional regulator 1802066 7000093 ECSE_1715 Escherichia coli SE11 putative transcriptional regulator YP_002292990.1 1800846 R 409438 CDS YP_002292991.1 209918907 7000094 complement(1802201..1803094) 1 NC_011415.1 putative transcriptional regulator 1803094 7000094 ECSE_1716 Escherichia coli SE11 putative transcriptional regulator YP_002292991.1 1802201 R 409438 CDS YP_002292992.1 209918908 7000095 1803201..1804454 1 NC_011415.1 putative transport protein 1804454 7000095 ECSE_1717 Escherichia coli SE11 putative transport protein YP_002292992.1 1803201 D 409438 CDS YP_002292993.1 209918909 7000096 1804878..1805186 1 NC_011415.1 required for growth and survival under moderately acid conditions; acid shock protein precursor 1805186 7000096 ECSE_1718 Escherichia coli SE11 acid shock protein precursor YP_002292993.1 1804878 D 409438 CDS YP_002292994.1 209918910 7000097 1805462..1806283 1 NC_011415.1 hypothetical protein 1806283 7000097 ECSE_1719 Escherichia coli SE11 hypothetical protein YP_002292994.1 1805462 D 409438 CDS YP_002292995.1 209918911 7000098 complement(1806322..1806651) 1 NC_011415.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtI 1806651 7000098 ECSE_1720 Escherichia coli SE11 multidrug efflux system protein MdtI YP_002292995.1 1806322 R 409438 CDS YP_002292996.1 209918912 7000099 complement(1806638..1807003) 1 NC_011415.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS; multidrug efflux system protein MdtJ 1807003 7000099 ECSE_1721 Escherichia coli SE11 multidrug efflux system protein MdtJ YP_002292996.1 1806638 R 409438 CDS YP_002292997.1 209918913 7000100 1807415..1808449 1 NC_011415.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes; putative transport protein 1808449 tqsA 7000100 tqsA Escherichia coli SE11 putative transport protein YP_002292997.1 1807415 D 409438 CDS YP_002292998.1 209918914 7000101 complement(1808474..1809862) 1 NC_011415.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1809862 pntB 7000101 pntB Escherichia coli SE11 pyridine nucleotide transhydrogenase YP_002292998.1 1808474 R 409438 CDS YP_002292999.1 209918915 7000102 complement(1809873..1811405) 1 NC_011415.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1811405 pntA 7000102 pntA Escherichia coli SE11 NAD(P) transhydrogenase subunit alpha YP_002292999.1 1809873 R 409438 CDS YP_002293000.1 209918916 7000103 1811929..1812840 1 NC_011415.1 hypothetical protein 1812840 7000103 ECSE_1725 Escherichia coli SE11 hypothetical protein YP_002293000.1 1811929 D 409438 CDS YP_002293001.1 209918917 7000104 1813060..1814442 1 NC_011415.1 putative arginine/ornithine transport protein 1814442 7000104 ECSE_1726 Escherichia coli SE11 putative arginine/ornithine transport protein YP_002293001.1 1813060 D 409438 CDS YP_002293002.1 209918918 7000105 1814479..1815201 1 NC_011415.1 short chain dehydrogenase 1815201 7000105 ECSE_1727 Escherichia coli SE11 short chain dehydrogenase YP_002293002.1 1814479 D 409438 CDS YP_002293003.1 209918919 7000106 complement(1815198..1815533) 1 NC_011415.1 hypothetical protein 1815533 7000106 ECSE_1728 Escherichia coli SE11 hypothetical protein YP_002293003.1 1815198 R 409438 CDS YP_002293004.1 209918920 7000107 1815662..1816381 1 NC_011415.1 response regulator in two-component regulatory system with RstB; DNA-binding transcriptional regulator RstA 1816381 7000107 ECSE_1729 Escherichia coli SE11 DNA-binding transcriptional regulator RstA YP_002293004.1 1815662 D 409438 CDS YP_002293005.1 209918921 7000108 1816385..1817686 1 NC_011415.1 sensor protein RstB 1817686 7000108 ECSE_1730 Escherichia coli SE11 sensor protein RstB YP_002293005.1 1816385 D 409438 CDS YP_002293006.1 209918922 7000109 1817762..1818691 1 NC_011415.1 binds to DNA replication terminator sequences to prevent passage of replication forks; DNA replication terminus site-binding protein 1818691 7000109 ECSE_1731 Escherichia coli SE11 DNA replication terminus site-binding protein YP_002293006.1 1817762 D 409438 CDS YP_002293007.1 209918923 7000110 complement(1818688..1820091) 1 NC_011415.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1820091 fumC 7000110 fumC Escherichia coli SE11 fumarate hydratase YP_002293007.1 1818688 R 409438 CDS YP_002293008.1 209918924 7000111 complement(1820233..1821879) 1 NC_011415.1 fumarase class I 1821879 7000111 ECSE_1733 Escherichia coli SE11 fumarase class I YP_002293008.1 1820233 R 409438 CDS YP_002293009.1 209918925 7000112 1822078..1823253 1 NC_011415.1 mannose-6-phosphate isomerase 1823253 7000112 ECSE_1734 Escherichia coli SE11 mannose-6-phosphate isomerase YP_002293009.1 1822078 D 409438 CDS YP_002293010.1 209918926 7000113 1823354..1824862 1 NC_011415.1 hypothetical protein 1824862 7000113 ECSE_1735 Escherichia coli SE11 hypothetical protein YP_002293010.1 1823354 D 409438 CDS YP_002293011.1 209918927 7000114 complement(1825088..1826353) 1 NC_011415.1 putative outer membrane porin protein 1826353 7000114 ECSE_1736 Escherichia coli SE11 putative outer membrane porin protein YP_002293011.1 1825088 R 409438 CDS YP_002293012.1 209918928 7000115 complement(1826392..1827765) 1 NC_011415.1 glucuronide transporter 1827765 7000115 ECSE_1737 Escherichia coli SE11 glucuronide transporter YP_002293012.1 1826392 R 409438 CDS YP_002293013.1 209918929 7000116 complement(1827762..1829573) 1 NC_011415.1 beta-D-glucuronidase 1829573 7000116 ECSE_1738 Escherichia coli SE11 beta-D-glucuronidase YP_002293013.1 1827762 R 409438 CDS YP_002293014.1 209918930 7000117 complement(1829962..1830552) 1 NC_011415.1 transcriptional regulator 1830552 7000117 ECSE_1739 Escherichia coli SE11 transcriptional regulator YP_002293014.1 1829962 R 409438 CDS YP_002293015.1 209918931 7000118 complement(1830781..1831548) 1 NC_011415.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 1831548 7000118 ECSE_1740 Escherichia coli SE11 7-alpha-hydroxysteroid dehydrogenase YP_002293015.1 1830781 R 409438 CDS YP_002293016.1 209918932 7000119 complement(1831660..1832688) 1 NC_011415.1 regulates malXY which are involved in maltose-glucose transport; DNA-binding transcriptional repressor MalI 1832688 7000119 ECSE_1741 Escherichia coli SE11 DNA-binding transcriptional repressor MalI YP_002293016.1 1831660 R 409438 CDS YP_002293017.1 209918933 7000120 1832863..1834455 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site; bifunctional PTS system maltose and glucose-specific transporter subunits IICB 1834455 7000120 ECSE_1742 Escherichia coli SE11 bifunctional PTS system maltose and glucose-specific transporter subunits IICB YP_002293017.1 1832863 D 409438 CDS YP_002293018.1 209918934 7000121 1834465..1835637 1 NC_011415.1 cystathionine beta-lyase 1835637 7000121 ECSE_1743 Escherichia coli SE11 cystathionine beta-lyase YP_002293018.1 1834465 D 409438 CDS YP_002293019.1 209918935 7000122 1835741..1836742 1 NC_011415.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1836742 7000122 ECSE_1744 Escherichia coli SE11 adenosine deaminase YP_002293019.1 1835741 D 409438 CDS YP_002293020.1 209918936 7000123 complement(1836777..1837856) 1 NC_011415.1 putative oxidoreductase 1837856 7000123 ECSE_1745 Escherichia coli SE11 putative oxidoreductase YP_002293020.1 1836777 R 409438 CDS YP_002293021.1 209918937 7000124 1838060..1838185 1 NC_011415.1 beta-lactam resistance protein 1838185 7000124 ECSE_1746 Escherichia coli SE11 beta-lactam resistance protein YP_002293021.1 1838060 D 409438 CDS YP_002293022.1 209918938 7000125 1838458..1838673 1 NC_011415.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes; oriC-binding nucleoid-associated protein 1838673 7000125 ECSE_1747 Escherichia coli SE11 oriC-binding nucleoid-associated protein YP_002293022.1 1838458 D 409438 CDS YP_002293023.1 209918939 7000126 1838759..1839199 1 NC_011415.1 hypothetical protein 1839199 7000126 ECSE_1748 Escherichia coli SE11 hypothetical protein YP_002293023.1 1838759 D 409438 CDS YP_002293024.1 209918940 7000127 1839276..1839857 1 NC_011415.1 Na(+)-translocating NADH-quinone reductase subunit E 1839857 7000127 ECSE_1749 Escherichia coli SE11 Na(+)-translocating NADH-quinone reductase subunit E YP_002293024.1 1839276 D 409438 CDS YP_002293025.1 209918941 7000128 1839857..1840435 1 NC_011415.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1840435 7000128 ECSE_1750 Escherichia coli SE11 electron transport complex protein RnfB YP_002293025.1 1839857 D 409438 CDS YP_002293026.1 209918942 7000129 1840428..1842650 1 NC_011415.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1842650 7000129 ECSE_1751 Escherichia coli SE11 electron transport complex protein RnfC YP_002293026.1 1840428 D 409438 CDS YP_002293027.1 209918943 7000130 1842651..1843709 1 NC_011415.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1843709 rnfD 7000130 rnfD Escherichia coli SE11 electron transport complex protein RnfD YP_002293027.1 1842651 D 409438 CDS YP_002293028.1 209918944 7000131 1843713..1844333 1 NC_011415.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1844333 7000131 ECSE_1753 Escherichia coli SE11 electron transport complex protein RnfG YP_002293028.1 1843713 D 409438 CDS YP_002293029.1 209918945 7000132 1844337..1845032 1 NC_011415.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 1845032 7000132 ECSE_1754 Escherichia coli SE11 electron transport complex RsxE subunit YP_002293029.1 1844337 D 409438 CDS YP_002293030.1 209918946 7000133 1845032..1845667 1 NC_011415.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; endonuclease III 1845667 7000133 ECSE_1755 Escherichia coli SE11 endonuclease III YP_002293030.1 1845032 D 409438 CDS YP_002293031.1 209918947 7000134 1845795..1845995 1 NC_011415.1 hypothetical protein 1845995 7000134 ECSE_1756 Escherichia coli SE11 hypothetical protein YP_002293031.1 1845795 D 409438 CDS YP_002293032.1 209918948 7000135 1846278..1847780 1 NC_011415.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation; putative tripeptide transporter permease 1847780 tppB 7000135 tppB Escherichia coli SE11 putative tripeptide transporter permease YP_002293032.1 1846278 D 409438 CDS YP_002293033.1 209918949 7000136 1847886..1848491 1 NC_011415.1 glutathionine S-transferase 1848491 7000136 ECSE_1758 Escherichia coli SE11 glutathionine S-transferase YP_002293033.1 1847886 D 409438 CDS YP_002293034.1 209918950 7000137 complement(1848535..1849395) 1 NC_011415.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1849395 7000137 ECSE_1759 Escherichia coli SE11 pyridoxamine kinase YP_002293034.1 1848535 R 409438 CDS YP_002293035.1 209918951 7000138 complement(1849457..1850731) 1 NC_011415.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1850731 7000138 ECSE_1760 Escherichia coli SE11 tyrosyl-tRNA synthetase YP_002293035.1 1849457 R 409438 CDS YP_002293036.1 209918952 7000139 complement(1850860..1851516) 1 NC_011415.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1851516 7000139 ECSE_1761 Escherichia coli SE11 pyridoxamine 5'-phosphate oxidase YP_002293036.1 1850860 R 409438 CDS YP_002293037.1 209918953 7000140 complement(1851575..1851904) 1 NC_011415.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1851904 7000140 ECSE_1762 Escherichia coli SE11 lysozyme inhibitor YP_002293037.1 1851575 R 409438 CDS YP_002293038.1 209918954 7000141 complement(1852002..1853111) 1 NC_011415.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1853111 anmK 7000141 anmK Escherichia coli SE11 anhydro-N-acetylmuramic acid kinase YP_002293038.1 1852002 R 409438 CDS YP_002293039.1 209918955 7000142 1853385..1853852 1 NC_011415.1 outer membrane lipoprotein 1853852 7000142 ECSE_1764 Escherichia coli SE11 outer membrane lipoprotein YP_002293039.1 1853385 D 409438 CDS YP_002293040.1 209918956 7000143 complement(1853899..1854339) 1 NC_011415.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 1854339 7000143 ECSE_1765 Escherichia coli SE11 transcriptional regulator SlyA YP_002293040.1 1853899 R 409438 CDS YP_002293041.1 209918957 7000144 1854534..1854770 1 NC_011415.1 hypothetical protein 1854770 7000144 ECSE_1766 Escherichia coli SE11 hypothetical protein YP_002293041.1 1854534 D 409438 CDS YP_002293042.1 209918958 7000145 1854773..1855630 1 NC_011415.1 hypothetical protein 1855630 7000145 ECSE_1767 Escherichia coli SE11 hypothetical protein YP_002293042.1 1854773 D 409438 CDS YP_002293043.1 209918959 7000146 1855630..1857642 1 NC_011415.1 hypothetical protein 1857642 7000146 ECSE_1768 Escherichia coli SE11 hypothetical protein YP_002293043.1 1855630 D 409438 CDS YP_002293044.1 209918960 7000147 complement(1857643..1858164) 1 NC_011415.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water; superoxide dismutase 1858164 7000147 ECSE_1769 Escherichia coli SE11 superoxide dismutase YP_002293044.1 1857643 R 409438 CDS YP_002293045.1 209918961 7000148 complement(1858245..1859141) 1 NC_011415.1 putative oxidoreductase 1859141 7000148 ECSE_1770 Escherichia coli SE11 putative oxidoreductase YP_002293045.1 1858245 R 409438 CDS YP_002293046.1 209918962 7000149 complement(1859190..1859567) 1 NC_011415.1 hypothetical protein 1859567 7000149 ECSE_1772 Escherichia coli SE11 hypothetical protein YP_002293046.1 1859190 R 409438 CDS YP_002293047.1 209918963 7000151 1859532..1860131 1 NC_011415.1 hypothetical protein 1860131 7000151 ECSE_1771 Escherichia coli SE11 hypothetical protein YP_002293047.1 1859532 D 409438 CDS YP_002293048.1 209918964 7000150 1860168..1861265 1 NC_011415.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide; N-ethylmaleimide reductase 1861265 7000150 ECSE_1773 Escherichia coli SE11 N-ethylmaleimide reductase YP_002293048.1 1860168 D 409438 CDS YP_002293049.1 209918965 7000152 1861346..1861753 1 NC_011415.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione; glyoxalase I 1861753 7000152 ECSE_1774 Escherichia coli SE11 glyoxalase I YP_002293049.1 1861346 D 409438 CDS YP_002293050.1 209918966 7000153 1861856..1862503 1 NC_011415.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1862503 7000153 ECSE_1775 Escherichia coli SE11 ribonuclease T YP_002293050.1 1861856 D 409438 CDS YP_002293051.1 209918967 7000154 1862596..1867212 1 NC_011415.1 similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli; putative ATP-dependent helicase Lhr 1867212 7000154 ECSE_1776 Escherichia coli SE11 putative ATP-dependent helicase Lhr YP_002293051.1 1862596 D 409438 CDS YP_002293052.1 209918968 7000155 complement(1867263..1867610) 1 NC_011415.1 hypothetical protein 1867610 7000155 ECSE_1777 Escherichia coli SE11 hypothetical protein YP_002293052.1 1867263 R 409438 CDS YP_002293053.1 209918969 7000156 complement(1867692..1867844) 1 NC_011415.1 hypothetical protein 1867844 7000156 ECSE_1778 Escherichia coli SE11 hypothetical protein YP_002293053.1 1867692 R 409438 CDS YP_002293054.1 209918970 7000157 1867944..1868759 1 NC_011415.1 putative lipoprotein 1868759 7000157 ECSE_1779 Escherichia coli SE11 putative lipoprotein YP_002293054.1 1867944 D 409438 CDS YP_002293055.1 209918971 7000158 1868887..1869468 1 NC_011415.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals; superoxide dismutase 1869468 7000158 ECSE_1780 Escherichia coli SE11 superoxide dismutase YP_002293055.1 1868887 D 409438 CDS YP_002293056.1 209918972 7000159 complement(1869614..1870783) 1 NC_011415.1 putative transport protein 1870783 7000159 ECSE_1781 Escherichia coli SE11 putative transport protein YP_002293056.1 1869614 R 409438 CDS YP_002293057.1 209918973 7000160 1871337..1872362 1 NC_011415.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1872362 7000160 ECSE_1782 Escherichia coli SE11 DNA-binding transcriptional repressor PurR YP_002293057.1 1871337 D 409438 CDS YP_002293058.1 209918974 7000161 complement(1872359..1873291) 1 NC_011415.1 putative DNA-binding transcriptional regulator 1873291 7000161 ECSE_1783 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002293058.1 1872359 R 409438 CDS YP_002293059.1 209918975 7000162 1873404..1874615 1 NC_011415.1 uncharacterized member of the major facilitator superfamily (MFS); inner membrane transport protein YdhC 1874615 7000162 ECSE_1784 Escherichia coli SE11 inner membrane transport protein YdhC YP_002293059.1 1873404 D 409438 CDS YP_002293060.1 209918976 7000163 1874906..1876054 1 NC_011415.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane fatty acyl phospholipid synthase 1876054 7000163 ECSE_1785 Escherichia coli SE11 cyclopropane fatty acyl phospholipid synthase YP_002293060.1 1874906 D 409438 CDS YP_002293061.1 209918977 7000164 complement(1876094..1876735) 1 NC_011415.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1876735 7000164 ECSE_1786 Escherichia coli SE11 riboflavin synthase subunit alpha YP_002293061.1 1876094 R 409438 CDS YP_002293062.1 209918978 7000165 1876950..1878323 1 NC_011415.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1878323 7000165 ECSE_1787 Escherichia coli SE11 multidrug efflux protein YP_002293062.1 1876950 D 409438 CDS YP_002293063.1 209918979 7000166 complement(1878364..1879620) 1 NC_011415.1 hypothetical protein 1879620 7000166 ECSE_1788 Escherichia coli SE11 hypothetical protein YP_002293063.1 1878364 R 409438 CDS YP_002293064.1 209918980 7003086 1880193..1880498 1 NC_011415.1 hypothetical protein 1880498 7003086 ECSE_1789 Escherichia coli SE11 hypothetical protein YP_002293064.1 1880193 D 409438 CDS YP_002293065.1 209918981 7000168 1880624..1882228 1 NC_011415.1 hypothetical protein 1882228 7000168 ECSE_1790 Escherichia coli SE11 hypothetical protein YP_002293065.1 1880624 D 409438 CDS YP_002293066.1 209918982 7000169 complement(1882240..1883052) 1 NC_011415.1 hypothetical protein 1883052 7000169 ECSE_1791 Escherichia coli SE11 hypothetical protein YP_002293066.1 1882240 R 409438 CDS YP_002293067.1 209918983 7000170 complement(1883056..1883841) 1 NC_011415.1 hypothetical protein 1883841 7000170 ECSE_1792 Escherichia coli SE11 hypothetical protein YP_002293067.1 1883056 R 409438 CDS YP_002293068.1 209918984 7000171 complement(1883838..1884506) 1 NC_011415.1 putative oxidoreductase Fe-S subunit 1884506 7000171 ECSE_1793 Escherichia coli SE11 putative oxidoreductase Fe-S subunit YP_002293068.1 1883838 R 409438 CDS YP_002293069.1 209918985 7000172 complement(1884570..1885217) 1 NC_011415.1 hypothetical protein 1885217 7000172 ECSE_1794 Escherichia coli SE11 hypothetical protein YP_002293069.1 1884570 R 409438 CDS YP_002293070.1 209918986 7000173 complement(1885221..1887323) 1 NC_011415.1 putative oxidoreductase 1887323 7000173 ECSE_1795 Escherichia coli SE11 putative oxidoreductase YP_002293070.1 1885221 R 409438 CDS YP_002293071.1 209918987 7000174 complement(1887344..1887970) 1 NC_011415.1 hypothetical protein 1887970 7000174 ECSE_1796 Escherichia coli SE11 hypothetical protein YP_002293071.1 1887344 R 409438 CDS YP_002293072.1 209918988 7000175 1887998..1888135 1 NC_011415.1 hypothetical protein 1888135 7000175 ECSE_1797 Escherichia coli SE11 hypothetical protein YP_002293072.1 1887998 D 409438 CDS YP_002293073.1 209918989 7000176 complement(1888426..1888635) 1 NC_011415.1 hypothetical protein 1888635 7000176 ECSE_1798 Escherichia coli SE11 hypothetical protein YP_002293073.1 1888426 R 409438 CDS YP_002293074.1 209918990 7000177 1889192..1890604 1 NC_011415.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1890604 7000177 ECSE_1799 Escherichia coli SE11 pyruvate kinase YP_002293074.1 1889192 D 409438 CDS YP_002293075.1 209918991 7000178 1890915..1891151 1 NC_011415.1 major outer membrane lipoprotein 1891151 7000178 ECSE_1800 Escherichia coli SE11 major outer membrane lipoprotein YP_002293075.1 1890915 D 409438 CDS YP_002293076.1 209918992 7000179 complement(1891215..1892219) 1 NC_011415.1 hypothetical protein 1892219 7000179 ECSE_1801 Escherichia coli SE11 hypothetical protein YP_002293076.1 1891215 R 409438 CDS YP_002293077.1 209918993 7000180 complement(1892368..1892784) 1 NC_011415.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine; cysteine desufuration protein SufE 1892784 7000180 ECSE_1802 Escherichia coli SE11 cysteine desufuration protein SufE YP_002293077.1 1892368 R 409438 CDS YP_002293078.1 209918994 7000181 complement(1892797..1894017) 1 NC_011415.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine; bifunctional cysteine desulfurase/selenocysteine lyase 1894017 7000181 ECSE_1803 Escherichia coli SE11 bifunctional cysteine desulfurase/selenocysteine lyase YP_002293078.1 1892797 R 409438 CDS YP_002293079.1 209918995 7000182 complement(1894014..1895285) 1 NC_011415.1 with SufBC activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufD 1895285 7000182 ECSE_1804 Escherichia coli SE11 cysteine desulfurase activator complex subunit SufD YP_002293079.1 1894014 R 409438 CDS YP_002293080.1 209918996 7000183 complement(1895260..1896006) 1 NC_011415.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase component 1896006 sufC 7000183 sufC Escherichia coli SE11 cysteine desulfurase ATPase component YP_002293080.1 1895260 R 409438 CDS YP_002293081.1 209918997 7000184 complement(1896016..1897503) 1 NC_011415.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 1897503 7000184 ECSE_1806 Escherichia coli SE11 cysteine desulfurase activator complex subunit SufB YP_002293081.1 1896016 R 409438 CDS YP_002293082.1 209918998 7000185 complement(1897512..1897880) 1 NC_011415.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein; iron-sulfur cluster assembly scaffold protein 1897880 sufA 7000185 sufA Escherichia coli SE11 iron-sulfur cluster assembly scaffold protein YP_002293082.1 1897512 R 409438 CDS YP_002293083.1 209918999 7000186 complement(1898429..1898698) 1 NC_011415.1 hypothetical protein 1898698 7000186 ECSE_1808 Escherichia coli SE11 hypothetical protein YP_002293083.1 1898429 R 409438 CDS YP_002293084.1 209919000 7000187 complement(1898717..1899127) 1 NC_011415.1 hypothetical protein 1899127 7000187 ECSE_1809 Escherichia coli SE11 hypothetical protein YP_002293084.1 1898717 R 409438 CDS YP_002293085.1 209919001 7000188 complement(1899124..1902180) 1 NC_011415.1 putative oxidase 1902180 7000188 ECSE_1810 Escherichia coli SE11 putative oxidase YP_002293085.1 1899124 R 409438 CDS YP_002293086.1 209919002 7000189 1902569..1903681 1 NC_011415.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function; putative inner membrane protein 1903681 7000189 ECSE_1811 Escherichia coli SE11 putative inner membrane protein YP_002293086.1 1902569 D 409438 CDS YP_002293087.1 209919003 7000190 1904110..1904466 1 NC_011415.1 hypothetical protein 1904466 7000190 ECSE_1812 Escherichia coli SE11 hypothetical protein YP_002293087.1 1904110 D 409438 CDS YP_002293088.1 209919004 7000191 1904566..1905780 1 NC_011415.1 putative transport protein 1905780 7000191 ECSE_1813 Escherichia coli SE11 putative transport protein YP_002293088.1 1904566 D 409438 CDS YP_002293089.1 209919005 7000192 1906007..1907272 1 NC_011415.1 putative amino acid/amine transport protein 1907272 7000192 ECSE_1814 Escherichia coli SE11 putative amino acid/amine transport protein YP_002293089.1 1906007 D 409438 CDS YP_002293090.1 209919006 7000193 1907284..1908150 1 NC_011415.1 YdiB; quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate; quinate/shikimate dehydrogenase 1908150 7000193 ECSE_1815 Escherichia coli SE11 quinate/shikimate dehydrogenase YP_002293090.1 1907284 D 409438 CDS YP_002293091.1 209919007 7000194 1908181..1908939 1 NC_011415.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 1908939 aroD 7000194 aroD Escherichia coli SE11 3-dehydroquinate dehydratase YP_002293091.1 1908181 D 409438 CDS YP_002293092.1 209919008 7000195 1909083..1910678 1 NC_011415.1 hypothetical protein 1910678 7000195 ECSE_1817 Escherichia coli SE11 hypothetical protein YP_002293092.1 1909083 D 409438 CDS YP_002293093.1 209919009 7000196 1910692..1911843 1 NC_011415.1 may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative acyl-CoA dehydrogenase 1911843 7000196 ECSE_1818 Escherichia coli SE11 putative acyl-CoA dehydrogenase YP_002293093.1 1910692 D 409438 CDS YP_002293094.1 209919010 7000197 complement(1911886..1912797) 1 NC_011415.1 putative transcription regulator 1912797 7000197 ECSE_1819 Escherichia coli SE11 putative transcription regulator YP_002293094.1 1911886 R 409438 CDS YP_002293095.1 209919011 7000198 complement(1912900..1913076) 1 NC_011415.1 hypothetical protein 1913076 7000198 ECSE_1820 Escherichia coli SE11 hypothetical protein YP_002293095.1 1912900 R 409438 CDS YP_002293096.1 209919012 7000199 1913113..1913877 1 NC_011415.1 YdiO, YdiQ, YdiR, YdiS, and YdiT may play a role in electron transport between the anaerobic fatty acid oxidation pathway and the respiratory chain; putative electron transfer flavoprotein YdiQ 1913877 7000199 ECSE_1821 Escherichia coli SE11 putative electron transfer flavoprotein YdiQ YP_002293096.1 1913113 D 409438 CDS YP_002293097.1 209919013 7000200 1913897..1914835 1 NC_011415.1 May play a role in a redox process; electron transfer flavoprotein subunit YdiR 1914835 7000200 ECSE_1822 Escherichia coli SE11 electron transfer flavoprotein subunit YdiR YP_002293097.1 1913897 D 409438 CDS YP_002293098.1 209919014 7000201 1914891..1916180 1 NC_011415.1 hypothetical protein 1916180 7000201 ECSE_1823 Escherichia coli SE11 hypothetical protein YP_002293098.1 1914891 D 409438 CDS YP_002293099.1 209919015 7000202 1916177..1916470 1 NC_011415.1 putative ferredoxin 1916470 7000202 ECSE_1824 Escherichia coli SE11 putative ferredoxin YP_002293099.1 1916177 D 409438 CDS YP_002293100.1 209919016 7000203 1916473..1918173 1 NC_011415.1 acts in anaerobic beta-oxidation of fatty acids; possible ligase/synthase involved in anaerobic growth on fatty acids; short chain acyl-CoA synthetase 1918173 7000203 ECSE_1825 Escherichia coli SE11 short chain acyl-CoA synthetase YP_002293100.1 1916473 D 409438 CDS YP_002293101.1 209919017 7000204 complement(1918230..1920608) 1 NC_011415.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1920608 7000204 ECSE_1826 Escherichia coli SE11 phosphoenolpyruvate synthase YP_002293101.1 1918230 R 409438 CDS YP_002293102.1 209919018 7000205 complement(1920662..1920829) 1 NC_011415.1 hypothetical protein 1920829 7000205 ECSE_1827 Escherichia coli SE11 hypothetical protein YP_002293102.1 1920662 R 409438 CDS YP_002293103.1 209919019 7000206 1920941..1921774 1 NC_011415.1 hypothetical protein 1921774 7000206 ECSE_1828 Escherichia coli SE11 hypothetical protein YP_002293103.1 1920941 D 409438 CDS YP_002293104.1 209919020 7000207 1921930..1922976 1 NC_011415.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 1922976 7000207 ECSE_1829 Escherichia coli SE11 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002293104.1 1921930 D 409438 CDS YP_002293105.1 209919021 7000208 1923108..1923299 1 NC_011415.1 hypothetical protein 1923299 7000208 ECSE_1830 Escherichia coli SE11 hypothetical protein YP_002293105.1 1923108 D 409438 CDS YP_002293106.1 209919022 7000209 complement(1923303..1924739) 1 NC_011415.1 hypothetical protein 1924739 7000209 ECSE_1831 Escherichia coli SE11 hypothetical protein YP_002293106.1 1923303 R 409438 CDS YP_002293107.1 209919023 7000210 complement(1924802..1925515) 1 NC_011415.1 hypothetical protein 1925515 7000210 ECSE_1832 Escherichia coli SE11 hypothetical protein YP_002293107.1 1924802 R 409438 CDS YP_002293108.1 209919024 7000211 complement(1925762..1926226) 1 NC_011415.1 putative lipoprotein 1926226 7000211 ECSE_1833 Escherichia coli SE11 putative lipoprotein YP_002293108.1 1925762 R 409438 CDS YP_002293109.1 209919025 7000212 complement(1926304..1927053) 1 NC_011415.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell; vitamin B12-transporter ATPase 1927053 7000212 ECSE_1834 Escherichia coli SE11 vitamin B12-transporter ATPase YP_002293109.1 1926304 R 409438 CDS YP_002293110.1 209919026 7000213 complement(1927053..1927604) 1 NC_011415.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; putative glutathione peroxidase 1927604 btuE 7000213 btuE Escherichia coli SE11 putative glutathione peroxidase YP_002293110.1 1927053 R 409438 CDS YP_002293111.1 209919027 7000214 complement(1927667..1928647) 1 NC_011415.1 with BtuD and BtuF transports vitamin B12 into the cell; vtamin B12-transporter permease 1928647 7000214 ECSE_1836 Escherichia coli SE11 vtamin B12-transporter permease YP_002293111.1 1927667 R 409438 CDS YP_002293112.1 209919028 7000215 complement(1928856..1929296) 1 NC_011415.1 hypothetical protein 1929296 7000215 ECSE_1837 Escherichia coli SE11 hypothetical protein YP_002293112.1 1928856 R 409438 CDS YP_002293113.1 209919029 7000216 complement(1929658..1930635) 1 NC_011415.1 phage integrase 1930635 7000216 ECSE_1838 Escherichia coli SE11 phage integrase YP_002293113.1 1929658 R 409438 CDS YP_002293114.1 209919030 7000217 complement(1930685..1930993) 1 NC_011415.1 hypothetical protein 1930993 7000217 ECSE_1839 Escherichia coli SE11 hypothetical protein YP_002293114.1 1930685 R 409438 CDS YP_002293115.1 209919031 7000218 1931383..1931721 1 NC_011415.1 hypothetical protein 1931721 7000218 ECSE_1840 Escherichia coli SE11 hypothetical protein YP_002293115.1 1931383 D 409438 CDS YP_002293116.1 209919032 7000219 1931732..1932019 1 NC_011415.1 hypothetical protein 1932019 7000219 ECSE_1841 Escherichia coli SE11 hypothetical protein YP_002293116.1 1931732 D 409438 CDS YP_002293117.1 209919033 7000220 1932031..1932273 1 NC_011415.1 hypothetical protein 1932273 7000220 ECSE_1842 Escherichia coli SE11 hypothetical protein YP_002293117.1 1932031 D 409438 CDS YP_002293118.1 209919034 7000221 1932470..1932673 1 NC_011415.1 hypothetical protein 1932673 7000221 ECSE_1843 Escherichia coli SE11 hypothetical protein YP_002293118.1 1932470 D 409438 CDS YP_002293119.1 209919035 7000222 1932670..1932915 1 NC_011415.1 hypothetical protein 1932915 7000222 ECSE_1844 Escherichia coli SE11 hypothetical protein YP_002293119.1 1932670 D 409438 CDS YP_002293120.1 209919036 7000223 1933057..1933422 1 NC_011415.1 hypothetical protein 1933422 7000223 ECSE_1845 Escherichia coli SE11 hypothetical protein YP_002293120.1 1933057 D 409438 CDS YP_002293121.1 209919037 7000224 1933429..1936194 1 NC_011415.1 putative phage replication protein 1936194 7000224 ECSE_1846 Escherichia coli SE11 putative phage replication protein YP_002293121.1 1933429 D 409438 CDS YP_002293122.1 209919038 7000225 complement(1936405..1937196) 1 NC_011415.1 hypothetical protein 1937196 7000225 ECSE_1847 Escherichia coli SE11 hypothetical protein YP_002293122.1 1936405 R 409438 CDS YP_002293123.1 209919039 7000226 complement(1937536..1938912) 1 NC_011415.1 hypothetical protein 1938912 7000226 ECSE_1848 Escherichia coli SE11 hypothetical protein YP_002293123.1 1937536 R 409438 CDS YP_002293124.1 209919040 7000227 1939029..1939181 1 NC_011415.1 hypothetical protein 1939181 7000227 ECSE_1849 Escherichia coli SE11 hypothetical protein YP_002293124.1 1939029 D 409438 CDS YP_002293125.1 209919041 7000228 1939264..1939392 1 NC_011415.1 hypothetical protein 1939392 7000228 ECSE_1850 Escherichia coli SE11 hypothetical protein YP_002293125.1 1939264 D 409438 CDS YP_002293126.1 209919042 7000229 complement(1939461..1940507) 1 NC_011415.1 phage capsid portal protein 1940507 7000229 ECSE_1851 Escherichia coli SE11 phage capsid portal protein YP_002293126.1 1939461 R 409438 CDS YP_002293127.1 209919043 7000230 complement(1940507..1942258) 1 NC_011415.1 phage terminase 1942258 7000230 ECSE_1852 Escherichia coli SE11 phage terminase YP_002293127.1 1940507 R 409438 CDS YP_002293128.1 209919044 7000231 1942413..1943249 1 NC_011415.1 phage capsid scaffolding protein 1943249 7000231 ECSE_1853 Escherichia coli SE11 phage capsid scaffolding protein YP_002293128.1 1942413 D 409438 CDS YP_002293129.1 209919045 7000232 1943284..1944324 1 NC_011415.1 phage major capsid protein 1944324 7000232 ECSE_1854 Escherichia coli SE11 phage major capsid protein YP_002293129.1 1943284 D 409438 CDS YP_002293130.1 209919046 7000233 1944370..1945170 1 NC_011415.1 phage terminase 1945170 7000233 ECSE_1855 Escherichia coli SE11 phage terminase YP_002293130.1 1944370 D 409438 CDS YP_002293131.1 209919047 7000234 1945273..1945767 1 NC_011415.1 phage head completion protein 1945767 7000234 ECSE_1856 Escherichia coli SE11 phage head completion protein YP_002293131.1 1945273 D 409438 CDS YP_002293132.1 209919048 7000235 1945767..1945967 1 NC_011415.1 phage tail protein 1945967 7000235 ECSE_1857 Escherichia coli SE11 phage tail protein YP_002293132.1 1945767 D 409438 CDS YP_002293133.1 209919049 7000236 1945955..1946293 1 NC_011415.1 putative phage holin 1946293 7000236 ECSE_1858 Escherichia coli SE11 putative phage holin YP_002293133.1 1945955 D 409438 CDS YP_002293134.1 209919050 7000237 1946290..1946682 1 NC_011415.1 putative phage endolysin 1946682 7000237 ECSE_1859 Escherichia coli SE11 putative phage endolysin YP_002293134.1 1946290 D 409438 CDS YP_002293135.1 209919051 7000238 1946679..1947086 1 NC_011415.1 hypothetical protein 1947086 7000238 ECSE_1860 Escherichia coli SE11 hypothetical protein YP_002293135.1 1946679 D 409438 CDS YP_002293136.1 209919052 7000239 1947224..1947691 1 NC_011415.1 phage tail completion protein 1947691 7000239 ECSE_1861 Escherichia coli SE11 phage tail completion protein YP_002293136.1 1947224 D 409438 CDS YP_002293137.1 209919053 7000240 1947675..1948319 1 NC_011415.1 putative phage tail completion protein 1948319 7000240 ECSE_1862 Escherichia coli SE11 putative phage tail completion protein YP_002293137.1 1947675 D 409438 CDS YP_002293138.1 209919054 7000241 1948316..1948897 1 NC_011415.1 putative phage baseplate assembly protein 1948897 7000241 ECSE_1863 Escherichia coli SE11 putative phage baseplate assembly protein YP_002293138.1 1948316 D 409438 CDS YP_002293139.1 209919055 7000242 1948894..1949244 1 NC_011415.1 phage baseplate assembly protein 1949244 7000242 ECSE_1864 Escherichia coli SE11 phage baseplate assembly protein YP_002293139.1 1948894 D 409438 CDS YP_002293140.1 209919056 7000243 1949248..1950144 1 NC_011415.1 phage baseplate assembly protein 1950144 7000243 ECSE_1865 Escherichia coli SE11 phage baseplate assembly protein YP_002293140.1 1949248 D 409438 CDS YP_002293141.1 209919057 7000244 1950137..1950667 1 NC_011415.1 putative phage tail protein 1950667 7000244 ECSE_1866 Escherichia coli SE11 putative phage tail protein YP_002293141.1 1950137 D 409438 CDS YP_002293142.1 209919058 7000245 1950670..1952655 1 NC_011415.1 hypothetical protein 1952655 7000245 ECSE_1867 Escherichia coli SE11 hypothetical protein YP_002293142.1 1950670 D 409438 CDS YP_002293143.1 209919059 7000246 1952658..1953191 1 NC_011415.1 putative phage tail fiber protein 1953191 7000246 ECSE_1868 Escherichia coli SE11 putative phage tail fiber protein YP_002293143.1 1952658 D 409438 CDS YP_002293144.1 209919060 7000247 complement(1953220..1953747) 1 NC_011415.1 putative phage tail fiber protein 1953747 7000247 ECSE_1869 Escherichia coli SE11 putative phage tail fiber protein YP_002293144.1 1953220 R 409438 CDS YP_002293145.1 209919061 7000248 complement(1953751..1954587) 1 NC_011415.1 hypothetical protein 1954587 7000248 ECSE_1870 Escherichia coli SE11 hypothetical protein YP_002293145.1 1953751 R 409438 CDS YP_002293146.1 209919062 7000249 1954674..1955291 1 NC_011415.1 phage recombinase 1955291 7000249 ECSE_1871 Escherichia coli SE11 phage recombinase YP_002293146.1 1954674 D 409438 CDS YP_002293147.1 209919063 7000250 complement(1955320..1955808) 1 NC_011415.1 putative phage tail fiber protein 1955808 7000250 ECSE_1872 Escherichia coli SE11 putative phage tail fiber protein YP_002293147.1 1955320 R 409438 CDS YP_002293148.1 209919064 7000251 complement(1955821..1958628) 1 NC_011415.1 putative phage tail fiber protein 1958628 7000251 ECSE_1873 Escherichia coli SE11 putative phage tail fiber protein YP_002293148.1 1955821 R 409438 CDS YP_002293149.1 209919065 7000252 complement(1958779..1959153) 1 NC_011415.1 putative phage tail protein 1959153 7000252 ECSE_1874 Escherichia coli SE11 putative phage tail protein YP_002293149.1 1958779 R 409438 CDS YP_002293150.1 209919066 7000253 complement(1959209..1959721) 1 NC_011415.1 putative phage tail tube protein 1959721 7000253 ECSE_1875 Escherichia coli SE11 putative phage tail tube protein YP_002293150.1 1959209 R 409438 CDS YP_002293151.1 209919067 7000254 complement(1959721..1960905) 1 NC_011415.1 putative phage tail sheath protein 1960905 7000254 ECSE_1876 Escherichia coli SE11 putative phage tail sheath protein YP_002293151.1 1959721 R 409438 CDS YP_002293152.1 209919068 7000255 1961063..1962160 1 NC_011415.1 hypothetical protein 1962160 7000255 ECSE_1877 Escherichia coli SE11 hypothetical protein YP_002293152.1 1961063 D 409438 CDS YP_002293153.1 209919069 7000256 complement(1962291..1963451) 1 NC_011415.1 hypothetical protein 1963451 7000256 ECSE_1878 Escherichia coli SE11 hypothetical protein YP_002293153.1 1962291 R 409438 CDS YP_002293154.1 209919070 7000257 1963653..1963913 1 NC_011415.1 putative phage regulator 1963913 7000257 ECSE_1879 Escherichia coli SE11 putative phage regulator YP_002293154.1 1963653 D 409438 CDS YP_002293155.1 209919071 7000258 1964104..1964244 1 NC_011415.1 hypothetical protein 1964244 7000258 ECSE_1880 Escherichia coli SE11 hypothetical protein YP_002293155.1 1964104 D 409438 CDS YP_002293156.1 209919072 7000259 complement(1964550..1964849) 1 NC_011415.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1964849 ihfA 7000259 ihfA Escherichia coli SE11 integration host factor subunit alpha YP_002293156.1 1964550 R 409438 CDS YP_002293157.1 209919073 7000260 complement(1964854..1967241) 1 NC_011415.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1967241 pheT 7000260 pheT Escherichia coli SE11 phenylalanyl-tRNA synthetase subunit beta YP_002293157.1 1964854 R 409438 CDS YP_002293158.1 209919074 7000261 complement(1967256..1968239) 1 NC_011415.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1968239 pheS 7000261 pheS Escherichia coli SE11 phenylalanyl-tRNA synthetase subunit alpha YP_002293158.1 1967256 R 409438 CDS YP_002293159.1 209919075 7000262 complement(1968689..1969045) 1 NC_011415.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1969045 rplT 7000262 rplT Escherichia coli SE11 50S ribosomal protein L20 YP_002293159.1 1968689 R 409438 CDS YP_002293160.1 209919076 7000263 complement(1969098..1969295) 1 NC_011415.1 50S ribosomal protein L35 1969295 rpmI 7000263 rpmI Escherichia coli SE11 50S ribosomal protein L35 YP_002293160.1 1969098 R 409438 CDS YP_002293161.1 209919077 7000264 complement(1969392..1969826) 1 NC_011415.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1969826 infC 7000264 infC Escherichia coli SE11 translation initiation factor IF-3 YP_002293161.1 1969392 R 409438 CDS YP_002293162.1 209919078 7000265 complement(1969938..1971866) 1 NC_011415.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1971866 7000265 ECSE_1887 Escherichia coli SE11 threonyl-tRNA synthetase YP_002293162.1 1969938 R 409438 CDS YP_002293163.1 209919079 7000266 1972390..1973505 1 NC_011415.1 hypothetical protein 1973505 7000266 ECSE_1888 Escherichia coli SE11 hypothetical protein YP_002293163.1 1972390 D 409438 CDS YP_002293164.1 209919080 7000267 1973527..1974288 1 NC_011415.1 hypothetical protein 1974288 7000267 ECSE_1889 Escherichia coli SE11 hypothetical protein YP_002293164.1 1973527 D 409438 CDS YP_002293165.1 209919081 7000268 1974353..1974571 1 NC_011415.1 hypothetical protein 1974571 7000268 ECSE_1890 Escherichia coli SE11 hypothetical protein YP_002293165.1 1974353 D 409438 CDS YP_002293166.1 209919082 7000269 complement(1974624..1975382) 1 NC_011415.1 hypothetical protein 1975382 7000269 ECSE_1891 Escherichia coli SE11 hypothetical protein YP_002293166.1 1974624 R 409438 CDS YP_002293167.1 209919083 7000270 1975666..1976598 1 NC_011415.1 6-phosphofructokinase 2 1976598 7000270 ECSE_1892 Escherichia coli SE11 6-phosphofructokinase 2 YP_002293167.1 1975666 D 409438 CDS YP_002293168.1 209919084 7000271 1976699..1976989 1 NC_011415.1 hypothetical protein 1976989 7000271 ECSE_1893 Escherichia coli SE11 hypothetical protein YP_002293168.1 1976699 D 409438 CDS YP_002293169.1 209919085 7000272 1977095..1977955 1 NC_011415.1 hypothetical protein 1977955 7000272 ECSE_1894 Escherichia coli SE11 hypothetical protein YP_002293169.1 1977095 D 409438 CDS YP_002293170.1 209919086 7000273 complement(1977996..1978532) 1 NC_011415.1 hypothetical protein 1978532 7000273 ECSE_1895 Escherichia coli SE11 hypothetical protein YP_002293170.1 1977996 R 409438 CDS YP_002293171.1 209919087 7000274 1978679..1979347 1 NC_011415.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate; 2-deoxyglucose-6-phosphatase 1979347 7000274 ECSE_1896 Escherichia coli SE11 2-deoxyglucose-6-phosphatase YP_002293171.1 1978679 D 409438 CDS YP_002293172.1 209919088 7000275 1979510..1980100 1 NC_011415.1 hypothetical protein 1980100 7000275 ECSE_1897 Escherichia coli SE11 hypothetical protein YP_002293172.1 1979510 D 409438 CDS YP_002293173.1 209919089 7000276 1980233..1981624 1 NC_011415.1 hypothetical protein 1981624 7000276 ECSE_1898 Escherichia coli SE11 hypothetical protein YP_002293173.1 1980233 D 409438 CDS YP_002293174.1 209919090 7000277 complement(1981628..1982065) 1 NC_011415.1 hypothetical protein 1982065 7000277 ECSE_1899 Escherichia coli SE11 hypothetical protein YP_002293174.1 1981628 R 409438 CDS YP_002293175.1 209919091 7000278 complement(1982075..1982443) 1 NC_011415.1 hypothetical protein 1982443 7000278 ECSE_1900 Escherichia coli SE11 hypothetical protein YP_002293175.1 1982075 R 409438 CDS YP_002293176.1 209919092 7000279 complement(1982720..1982962) 1 NC_011415.1 cell division modulator 1982962 7000279 ECSE_1901 Escherichia coli SE11 cell division modulator YP_002293176.1 1982720 R 409438 CDS YP_002293177.1 209919093 7000280 1983166..1985427 1 NC_011415.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 1985427 katE 7000280 katE Escherichia coli SE11 hydroperoxidase II YP_002293177.1 1983166 D 409438 CDS YP_002293178.1 209919094 7000281 complement(1985474..1986232) 1 NC_011415.1 hypothetical protein 1986232 7000281 ECSE_1903 Escherichia coli SE11 hypothetical protein YP_002293178.1 1985474 R 409438 CDS YP_002293179.1 209919095 7000282 complement(1986245..1987597) 1 NC_011415.1 phospho-beta-glucosidase 1987597 7000282 ECSE_1904 Escherichia coli SE11 phospho-beta-glucosidase YP_002293179.1 1986245 R 409438 CDS YP_002293180.1 209919096 7000283 complement(1987702..1988544) 1 NC_011415.1 represses the celABCDF-ydjC operon involved in carbon uptake; DNA-binding transcriptional regulator ChbR 1988544 7000283 ECSE_1905 Escherichia coli SE11 DNA-binding transcriptional regulator ChbR YP_002293180.1 1987702 R 409438 CDS YP_002293181.1 209919097 7000284 complement(1988552..1988902) 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA 1988902 7000284 ECSE_1906 Escherichia coli SE11 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA YP_002293181.1 1988552 R 409438 CDS YP_002293182.1 209919098 7000285 complement(1988953..1990311) 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC 1990311 7000285 ECSE_1907 Escherichia coli SE11 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC YP_002293182.1 1988953 R 409438 CDS YP_002293183.1 209919099 7000286 complement(1990396..1990716) 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB 1990716 7000286 ECSE_1908 Escherichia coli SE11 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB YP_002293183.1 1990396 R 409438 CDS YP_002293184.1 209919100 7000287 complement(1991015..1991353) 1 NC_011415.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 1991353 7000287 ECSE_1909 Escherichia coli SE11 DNA-binding transcriptional activator OsmE YP_002293184.1 1991015 R 409438 CDS YP_002293185.1 209919101 7000288 1991555..1992382 1 NC_011415.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1992382 nadE 7000288 nadE Escherichia coli SE11 NAD synthetase YP_002293185.1 1991555 D 409438 CDS YP_002293186.1 209919102 7000289 1992612..1993499 1 NC_011415.1 3' incision activity; acts with UvrC; nucleotide excision repair endonuclease 1993499 7000289 ECSE_1911 Escherichia coli SE11 nucleotide excision repair endonuclease YP_002293186.1 1992612 D 409438 CDS YP_002293187.1 209919103 7000290 complement(1993459..1994097) 1 NC_011415.1 hypothetical protein 1994097 7000290 ECSE_1912 Escherichia coli SE11 hypothetical protein YP_002293187.1 1993459 R 409438 CDS YP_002293188.1 209919104 7000291 complement(1994237..1994722) 1 NC_011415.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP; periplasmic protein 1994722 7000291 ECSE_1913 Escherichia coli SE11 periplasmic protein YP_002293188.1 1994237 R 409438 CDS YP_002293189.1 209919105 7000292 complement(1995052..1996020) 1 NC_011415.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 1996020 7000292 ECSE_1914 Escherichia coli SE11 succinylglutamate desuccinylase YP_002293189.1 1995052 R 409438 CDS YP_002293190.1 209919106 7000293 complement(1996013..1997356) 1 NC_011415.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 1997356 7000293 ECSE_1915 Escherichia coli SE11 succinylarginine dihydrolase YP_002293190.1 1996013 R 409438 CDS YP_002293191.1 209919107 7000294 complement(1997353..1998831) 1 NC_011415.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 1998831 astD 7000294 astD Escherichia coli SE11 succinylglutamic semialdehyde dehydrogenase YP_002293191.1 1997353 R 409438 CDS YP_002293192.1 209919108 7000295 complement(1998828..1999862) 1 NC_011415.1 arginine succinyltransferase 1999862 7000295 ECSE_1917 Escherichia coli SE11 arginine succinyltransferase YP_002293192.1 1998828 R 409438 CDS YP_002293193.1 209919109 7000296 complement(1999859..2001079) 1 NC_011415.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate; bifunctional succinylornithine transaminase/acetylornithine transaminase 2001079 7000296 ECSE_1918 Escherichia coli SE11 bifunctional succinylornithine transaminase/acetylornithine transaminase YP_002293193.1 1999859 R 409438 CDS YP_002293194.1 209919110 7000297 2001342..2001512 1 NC_011415.1 hypothetical protein 2001512 7000297 ECSE_1919 Escherichia coli SE11 hypothetical protein YP_002293194.1 2001342 D 409438 CDS YP_002293195.1 209919111 7000298 2001525..2002331 1 NC_011415.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2002331 7000298 ECSE_1920 Escherichia coli SE11 exonuclease III YP_002293195.1 2001525 D 409438 CDS YP_002293196.1 209919112 7000299 2002498..2003208 1 NC_011415.1 hypothetical protein 2003208 7000299 ECSE_1921 Escherichia coli SE11 hypothetical protein YP_002293196.1 2002498 D 409438 CDS YP_002293197.1 209919113 7000300 2003213..2003890 1 NC_011415.1 hypothetical protein 2003890 7000300 ECSE_1922 Escherichia coli SE11 hypothetical protein YP_002293197.1 2003213 D 409438 CDS YP_002293198.1 209919114 7000301 2003905..2004612 1 NC_011415.1 hypothetical protein 2004612 7000301 ECSE_1923 Escherichia coli SE11 hypothetical protein YP_002293198.1 2003905 D 409438 CDS YP_002293199.1 209919115 7000302 2004612..2005160 1 NC_011415.1 hypothetical protein 2005160 7000302 ECSE_1924 Escherichia coli SE11 hypothetical protein YP_002293199.1 2004612 D 409438 CDS YP_002293200.1 209919116 7000303 2005170..2006336 1 NC_011415.1 putative ABC transporter solute-binding protein 2006336 7000303 ECSE_1925 Escherichia coli SE11 putative ABC transporter solute-binding protein YP_002293200.1 2005170 D 409438 CDS YP_002293201.1 209919117 7000304 2006354..2007844 1 NC_011415.1 putative ABC transporter permease 2007844 7000304 ECSE_1926 Escherichia coli SE11 putative ABC transporter permease YP_002293201.1 2006354 D 409438 CDS YP_002293202.1 209919118 7000305 2007844..2008497 1 NC_011415.1 putative ABC transporter ATP-binding protein 2008497 7000305 ECSE_1927 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002293202.1 2007844 D 409438 CDS YP_002293203.1 209919119 7000306 2008564..2009871 1 NC_011415.1 putative thiosulfate sulfur transferase 2009871 7000306 ECSE_1928 Escherichia coli SE11 putative thiosulfate sulfur transferase YP_002293203.1 2008564 D 409438 CDS YP_002293204.1 209919120 7000307 complement(2009880..2010506) 1 NC_011415.1 putative cytochrome oxidase 2010506 7000307 ECSE_1929 Escherichia coli SE11 putative cytochrome oxidase YP_002293204.1 2009880 R 409438 CDS YP_002293205.1 209919121 7000308 2010587..2010994 1 NC_011415.1 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 2010994 7000308 ECSE_1930 Escherichia coli SE11 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase YP_002293205.1 2010587 D 409438 CDS YP_002293206.1 209919122 7000309 complement(2010960..2011232) 1 NC_011415.1 hypothetical protein 2011232 7000309 ECSE_1931 Escherichia coli SE11 hypothetical protein YP_002293206.1 2010960 R 409438 CDS YP_002293207.1 209919123 7000310 2011468..2012811 1 NC_011415.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 2012811 7000310 ECSE_1932 Escherichia coli SE11 glutamate dehydrogenase YP_002293207.1 2011468 D 409438 CDS YP_002293208.1 209919124 7000311 complement(2012928..2013848) 1 NC_011415.1 hypothetical protein 2013848 7000311 ECSE_1933 Escherichia coli SE11 hypothetical protein YP_002293208.1 2012928 R 409438 CDS YP_002293209.1 209919125 7000312 complement(2014098..2016059) 1 NC_011415.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2016059 7000312 ECSE_1934 Escherichia coli SE11 DNA topoisomerase III YP_002293209.1 2014098 R 409438 CDS YP_002293210.1 209919126 7000313 complement(2016064..2017107) 1 NC_011415.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 2017107 7000313 ECSE_1935 Escherichia coli SE11 selenophosphate synthetase YP_002293210.1 2016064 R 409438 CDS YP_002293211.1 209919127 7000314 complement(2017224..2017775) 1 NC_011415.1 hypothetical protein 2017775 7000314 ECSE_1936 Escherichia coli SE11 hypothetical protein YP_002293211.1 2017224 R 409438 CDS YP_002293212.1 209919128 7000315 2017936..2019792 1 NC_011415.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane; protease 4 2019792 7000315 ECSE_1937 Escherichia coli SE11 protease 4 YP_002293212.1 2017936 D 409438 CDS YP_002293213.1 209919129 7000316 2019959..2020975 1 NC_011415.1 converts asparagine to aspartate and ammonia; cytoplasmic asparaginase I 2020975 ansA 7000316 ansA Escherichia coli SE11 cytoplasmic asparaginase I YP_002293213.1 2019959 D 409438 CDS YP_002293214.1 209919130 7000317 2020986..2021627 1 NC_011415.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide; nicotinamidase/pyrazinamidase 2021627 7000317 ECSE_1939 Escherichia coli SE11 nicotinamidase/pyrazinamidase YP_002293214.1 2020986 D 409438 CDS YP_002293215.1 209919131 7000318 complement(2021720..2023078) 1 NC_011415.1 putative transport protein 2023078 7000318 ECSE_1940 Escherichia coli SE11 putative transport protein YP_002293215.1 2021720 R 409438 CDS YP_002293216.1 209919132 7000319 complement(2023195..2023953) 1 NC_011415.1 putative transcriptional regulator 2023953 7000319 ECSE_1941 Escherichia coli SE11 putative transcriptional regulator YP_002293216.1 2023195 R 409438 CDS YP_002293217.1 209919133 7000320 complement(2024090..2025070) 1 NC_011415.1 putative oxidoreductase 2025070 7000320 ECSE_1942 Escherichia coli SE11 putative oxidoreductase YP_002293217.1 2024090 R 409438 CDS YP_002293218.1 209919134 7000321 complement(2025080..2026027) 1 NC_011415.1 putative kinase 2026027 7000321 ECSE_1943 Escherichia coli SE11 putative kinase YP_002293218.1 2025080 R 409438 CDS YP_002293219.1 209919135 7000322 complement(2026032..2026868) 1 NC_011415.1 putative aldolase 2026868 7000322 ECSE_1944 Escherichia coli SE11 putative aldolase YP_002293219.1 2026032 R 409438 CDS YP_002293220.1 209919136 7000323 complement(2026889..2027932) 1 NC_011415.1 putative dehydrogenase 2027932 7000323 ECSE_1945 Escherichia coli SE11 putative dehydrogenase YP_002293220.1 2026889 R 409438 CDS YP_002293221.1 209919137 7000324 complement(2027949..2029328) 1 NC_011415.1 putative transport protein 2029328 7000324 ECSE_1946 Escherichia coli SE11 putative transport protein YP_002293221.1 2027949 R 409438 CDS YP_002293222.1 209919138 7000325 complement(2029355..2030431) 1 NC_011415.1 putative alcohol dehydrogenase 2030431 7000325 ECSE_1947 Escherichia coli SE11 putative alcohol dehydrogenase YP_002293222.1 2029355 R 409438 CDS YP_002293223.1 209919139 7000326 complement(2030801..2031118) 1 NC_011415.1 hypothetical protein 2031118 7000326 ECSE_1948 Escherichia coli SE11 hypothetical protein YP_002293223.1 2030801 R 409438 CDS YP_002293224.1 209919140 7000327 complement(2031115..2031528) 1 NC_011415.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2031528 7000327 ECSE_1949 Escherichia coli SE11 methionine sulfoxide reductase B YP_002293224.1 2031115 R 409438 CDS YP_002293225.1 209919141 7000328 2031870..2032865 1 NC_011415.1 glyceraldehyde-3-phosphate dehydrogenase 2032865 7000328 ECSE_1950 Escherichia coli SE11 glyceraldehyde-3-phosphate dehydrogenase YP_002293225.1 2031870 D 409438 CDS YP_002293226.1 209919142 7000329 2032949..2033833 1 NC_011415.1 hypothetical protein 2033833 7000329 ECSE_1951 Escherichia coli SE11 hypothetical protein YP_002293226.1 2032949 D 409438 CDS YP_002293227.1 209919143 7000330 complement(2033884..2034738) 1 NC_011415.1 putative aldehyde reductase 2034738 7000330 ECSE_1952 Escherichia coli SE11 putative aldehyde reductase YP_002293227.1 2033884 R 409438 CDS YP_002293228.1 209919144 7000331 complement(2034828..2035574) 1 NC_011415.1 scaffolding protein for murein-synthesizing holoenzyme 2035574 7000331 ECSE_1953 Escherichia coli SE11 scaffolding protein for murein-synthesizing holoenzyme YP_002293228.1 2034828 R 409438 CDS YP_002293229.1 209919145 7000332 2036009..2037943 1 NC_011415.1 hypothetical protein 2037943 7000332 ECSE_1954 Escherichia coli SE11 hypothetical protein YP_002293229.1 2036009 D 409438 CDS YP_002293230.1 209919146 7000333 2038056..2039339 1 NC_011415.1 hypothetical protein 2039339 7000333 ECSE_1955 Escherichia coli SE11 hypothetical protein YP_002293230.1 2038056 D 409438 CDS YP_002293231.1 209919147 7000334 2039486..2040961 1 NC_011415.1 hypothetical protein 2040961 7000334 ECSE_1956 Escherichia coli SE11 hypothetical protein YP_002293231.1 2039486 D 409438 CDS YP_002293232.1 209919148 7000335 2041142..2042632 1 NC_011415.1 hypothetical protein 2042632 7000335 ECSE_1957 Escherichia coli SE11 hypothetical protein YP_002293232.1 2041142 D 409438 CDS YP_002293233.1 209919149 7000336 2042675..2043178 1 NC_011415.1 hypothetical protein 2043178 7000336 ECSE_1958 Escherichia coli SE11 hypothetical protein YP_002293233.1 2042675 D 409438 CDS YP_002293234.1 209919150 7000337 complement(2043179..2043331) 1 NC_011415.1 hypothetical protein 2043331 7000337 ECSE_1959 Escherichia coli SE11 hypothetical protein YP_002293234.1 2043179 R 409438 CDS YP_002293235.1 209919151 7000338 2043453..2043899 1 NC_011415.1 hypothetical protein 2043899 7000338 ECSE_1960 Escherichia coli SE11 hypothetical protein YP_002293235.1 2043453 D 409438 CDS YP_002293236.1 209919152 7000339 complement(2043856..2044677) 1 NC_011415.1 putative regulator 2044677 7000339 ECSE_1961 Escherichia coli SE11 putative regulator YP_002293236.1 2043856 R 409438 CDS YP_002293237.1 209919153 7000340 2044774..2045955 1 NC_011415.1 putative amino acid/amine transport protein 2045955 7000340 ECSE_1962 Escherichia coli SE11 putative amino acid/amine transport protein YP_002293237.1 2044774 D 409438 CDS YP_002293238.1 209919154 7000341 2046010..2046357 1 NC_011415.1 hypothetical protein 2046357 7000341 ECSE_1963 Escherichia coli SE11 hypothetical protein YP_002293238.1 2046010 D 409438 CDS YP_002293239.1 209919155 7000342 complement(2046379..2046633) 1 NC_011415.1 hypothetical protein 2046633 7000342 ECSE_1964 Escherichia coli SE11 hypothetical protein YP_002293239.1 2046379 R 409438 CDS YP_002293240.1 209919156 7000343 2046687..2047841 1 NC_011415.1 hypothetical protein 2047841 7000343 ECSE_1965 Escherichia coli SE11 hypothetical protein YP_002293240.1 2046687 D 409438 CDS YP_002293241.1 209919157 7000344 complement(2048108..2048356) 1 NC_011415.1 hypothetical protein 2048356 7000344 ECSE_1966 Escherichia coli SE11 hypothetical protein YP_002293241.1 2048108 R 409438 CDS YP_002293242.1 209919158 7000345 complement(2048368..2048553) 1 NC_011415.1 hypothetical protein 2048553 7000345 ECSE_1967 Escherichia coli SE11 hypothetical protein YP_002293242.1 2048368 R 409438 CDS YP_002293243.1 209919159 7000346 complement(2048583..2049731) 1 NC_011415.1 putative transposase 2049731 7000346 ECSE_1968 Escherichia coli SE11 putative transposase YP_002293243.1 2048583 R 409438 CDS YP_002293244.1 209919160 7000347 complement(2049769..2049915) 1 NC_011415.1 hypothetical protein 2049915 7000347 ECSE_1969 Escherichia coli SE11 hypothetical protein YP_002293244.1 2049769 R 409438 CDS YP_002293245.1 209919161 7000348 complement(2050246..2050434) 1 NC_011415.1 hypothetical protein 2050434 7000348 ECSE_1970 Escherichia coli SE11 hypothetical protein YP_002293245.1 2050246 R 409438 CDS YP_002293246.1 209919162 7000349 complement(2050438..2050797) 1 NC_011415.1 hypothetical protein 2050797 7000349 ECSE_1971 Escherichia coli SE11 hypothetical protein YP_002293246.1 2050438 R 409438 CDS YP_002293247.1 209919163 7000350 complement(2050970..2051608) 1 NC_011415.1 leucine export protein LeuE 2051608 7000350 ECSE_1972 Escherichia coli SE11 leucine export protein LeuE YP_002293247.1 2050970 R 409438 CDS YP_002293248.1 209919164 7000351 complement(2051735..2052658) 1 NC_011415.1 putative transcriptional regulator 2052658 7000351 ECSE_1973 Escherichia coli SE11 putative transcriptional regulator YP_002293248.1 2051735 R 409438 CDS YP_002293249.1 209919165 7000352 2052761..2053846 1 NC_011415.1 putative tartrate dehydrogenase 2053846 7000352 ECSE_1974 Escherichia coli SE11 putative tartrate dehydrogenase YP_002293249.1 2052761 D 409438 CDS YP_002293250.1 209919166 7000353 2054097..2055707 1 NC_011415.1 member of the betaine, carnitine, choline transporter (BCCT) family; unknown function; putative transporter 2055707 7000353 ECSE_1975 Escherichia coli SE11 putative transporter YP_002293250.1 2054097 D 409438 CDS YP_002293251.1 209919167 7000354 2055739..2056863 1 NC_011415.1 putative dioxygenase alpha subunit 2056863 7000354 ECSE_1976 Escherichia coli SE11 putative dioxygenase alpha subunit YP_002293251.1 2055739 D 409438 CDS YP_002293252.1 209919168 7000355 2056919..2057884 1 NC_011415.1 putative dioxygenase beta subunit 2057884 7000355 ECSE_1977 Escherichia coli SE11 putative dioxygenase beta subunit YP_002293252.1 2056919 D 409438 CDS YP_002293253.1 209919169 7000356 complement(2057938..2059065) 1 NC_011415.1 ribonuclease D 2059065 7000356 ECSE_1978 Escherichia coli SE11 ribonuclease D YP_002293253.1 2057938 R 409438 CDS YP_002293254.1 209919170 7000357 complement(2059135..2060820) 1 NC_011415.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2060820 7000357 ECSE_1979 Escherichia coli SE11 long-chain-fatty-acid--CoA ligase YP_002293254.1 2059135 R 409438 CDS YP_002293255.1 209919171 7000358 complement(2061025..2061606) 1 NC_011415.1 hypothetical protein 2061606 7000358 ECSE_1980 Escherichia coli SE11 hypothetical protein YP_002293255.1 2061025 R 409438 CDS YP_002293256.1 209919172 7000359 complement(2061646..2062341) 1 NC_011415.1 hypothetical protein 2062341 7000359 ECSE_1981 Escherichia coli SE11 hypothetical protein YP_002293256.1 2061646 R 409438 CDS YP_002293257.1 209919173 7000360 complement(2062399..2064309) 1 NC_011415.1 putative ATP-dependent helicase 2064309 7000360 ECSE_1982 Escherichia coli SE11 putative ATP-dependent helicase YP_002293257.1 2062399 R 409438 CDS YP_002293258.1 209919174 7000361 2064441..2064785 1 NC_011415.1 hypothetical protein 2064785 7000361 ECSE_1983 Escherichia coli SE11 hypothetical protein YP_002293258.1 2064441 D 409438 CDS YP_002293259.1 209919175 7000362 2065148..2065507 1 NC_011415.1 hypothetical protein 2065507 7000362 ECSE_1984 Escherichia coli SE11 hypothetical protein YP_002293259.1 2065148 D 409438 CDS YP_002293260.1 209919176 7000363 complement(2065627..2065806) 1 NC_011415.1 hypothetical protein 2065806 7000363 ECSE_1985 Escherichia coli SE11 hypothetical protein YP_002293260.1 2065627 R 409438 CDS YP_002293261.1 209919177 7000364 2065880..2067241 1 NC_011415.1 p-aminobenzoate synthase component I 2067241 7000364 ECSE_1986 Escherichia coli SE11 p-aminobenzoate synthase component I YP_002293261.1 2065880 D 409438 CDS YP_002293262.1 209919178 7000365 2067245..2067823 1 NC_011415.1 hypothetical protein 2067823 7000365 ECSE_1987 Escherichia coli SE11 hypothetical protein YP_002293262.1 2067245 D 409438 CDS YP_002293263.1 209919179 7000366 2068007..2069371 1 NC_011415.1 L-serine deaminase 2069371 7000366 ECSE_1988 Escherichia coli SE11 L-serine deaminase YP_002293263.1 2068007 D 409438 CDS YP_002293264.1 209919180 7000367 2069502..2071100 1 NC_011415.1 hypothetical protein 2071100 7000367 ECSE_1989 Escherichia coli SE11 hypothetical protein YP_002293264.1 2069502 D 409438 CDS YP_002293265.1 209919181 7000368 complement(2071104..2072660) 1 NC_011415.1 putative transport protein 2072660 7000368 ECSE_1990 Escherichia coli SE11 putative transport protein YP_002293265.1 2071104 R 409438 CDS YP_002293266.1 209919182 7000369 2073123..2074094 1 NC_011415.1 PTS system mannose-specific IIAB components 2074094 7000369 ECSE_1991 Escherichia coli SE11 PTS system mannose-specific IIAB components YP_002293266.1 2073123 D 409438 CDS YP_002293267.1 209919183 7000370 2074157..2074957 1 NC_011415.1 PTS system mannose-specific IIC component 2074957 7000370 ECSE_1992 Escherichia coli SE11 PTS system mannose-specific IIC component YP_002293267.1 2074157 D 409438 CDS YP_002293268.1 209919184 7000371 2074970..2075821 1 NC_011415.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 2075821 7000371 ECSE_1993 Escherichia coli SE11 PTS system mannose-specific transporter subunit IID YP_002293268.1 2074970 D 409438 CDS YP_002293269.1 209919185 7000372 2075876..2076334 1 NC_011415.1 hypothetical protein 2076334 7000372 ECSE_1994 Escherichia coli SE11 hypothetical protein YP_002293269.1 2075876 D 409438 CDS YP_002293270.1 209919186 7000373 2076763..2077329 1 NC_011415.1 membrane protein YebN; hypothetical protein 2077329 7000373 ECSE_1995 Escherichia coli SE11 hypothetical protein YP_002293270.1 2076763 D 409438 CDS YP_002293271.1 209919187 7000374 complement(2077326..2078135) 1 NC_011415.1 methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth; 23S rRNA methyltransferase A 2078135 rrmA 7000374 rrmA Escherichia coli SE11 23S rRNA methyltransferase A YP_002293271.1 2077326 R 409438 CDS YP_002293272.1 209919188 7000375 complement(2078301..2078510) 1 NC_011415.1 cold shock-like protein CspC 2078510 7000375 ECSE_1997 Escherichia coli SE11 cold shock-like protein CspC YP_002293272.1 2078301 R 409438 CDS YP_002293273.1 209919189 7000376 complement(2078523..2078666) 1 NC_011415.1 hypothetical protein 2078666 7000376 ECSE_1998 Escherichia coli SE11 hypothetical protein YP_002293273.1 2078523 R 409438 CDS YP_002293274.1 209919190 7000377 complement(2079335..2079622) 1 NC_011415.1 hypothetical protein 2079622 7000377 ECSE_1999 Escherichia coli SE11 hypothetical protein YP_002293274.1 2079335 R 409438 CDS YP_002293275.1 209919191 7000378 complement(2079697..2079840) 1 NC_011415.1 hypothetical protein 2079840 7000378 ECSE_2000 Escherichia coli SE11 hypothetical protein YP_002293275.1 2079697 R 409438 CDS YP_002293276.1 209919192 7000379 2079999..2080238 1 NC_011415.1 hypothetical protein 2080238 7000379 ECSE_2001 Escherichia coli SE11 hypothetical protein YP_002293276.1 2079999 D 409438 CDS YP_002293277.1 209919193 7000380 complement(2080381..2081172) 1 NC_011415.1 putative transcriptional regulator 2081172 7000380 ECSE_2002 Escherichia coli SE11 putative transcriptional regulator YP_002293277.1 2080381 R 409438 CDS YP_002293278.1 209919194 7000381 2081349..2082722 1 NC_011415.1 putative transport protein 2082722 7000381 ECSE_2003 Escherichia coli SE11 putative transport protein YP_002293278.1 2081349 D 409438 CDS YP_002293279.1 209919195 7000382 complement(2082768..2083649) 1 NC_011415.1 putative metalloprotease; heat shock protein HtpX 2083649 7000382 ECSE_2004 Escherichia coli SE11 heat shock protein HtpX YP_002293279.1 2082768 R 409438 CDS YP_002293280.1 209919196 7000383 complement(2083841..2085889) 1 NC_011415.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 2085889 7000383 ECSE_2005 Escherichia coli SE11 carboxy-terminal protease YP_002293280.1 2083841 R 409438 CDS YP_002293281.1 209919197 7000384 complement(2085909..2086607) 1 NC_011415.1 affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 2086607 7000384 ECSE_2006 Escherichia coli SE11 putative solute/DNA competence effector YP_002293281.1 2085909 R 409438 CDS YP_002293282.1 209919198 7000385 complement(2086704..2087201) 1 NC_011415.1 hypothetical protein 2087201 7000385 ECSE_2007 Escherichia coli SE11 hypothetical protein YP_002293282.1 2086704 R 409438 CDS YP_002293283.1 209919199 7000386 2087331..2088614 1 NC_011415.1 hypothetical protein 2088614 7000386 ECSE_2008 Escherichia coli SE11 hypothetical protein YP_002293283.1 2087331 D 409438 CDS YP_002293284.1 209919200 7000387 2088577..2091216 1 NC_011415.1 hypothetical protein 2091216 7000387 ECSE_2009 Escherichia coli SE11 hypothetical protein YP_002293284.1 2088577 D 409438 CDS YP_002293285.1 209919201 7000388 2091290..2092735 1 NC_011415.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA; rRNA (cytosine-C(5)-)-methyltransferase RsmF 2092735 yebU 7000388 yebU Escherichia coli SE11 rRNA (cytosine-C(5)-)-methyltransferase RsmF YP_002293285.1 2091290 D 409438 CDS YP_002293286.1 209919202 7000389 2092838..2093089 1 NC_011415.1 hypothetical protein 2093089 7000389 ECSE_2011 Escherichia coli SE11 hypothetical protein YP_002293286.1 2092838 D 409438 CDS YP_002293287.1 209919203 7000390 2093110..2093385 1 NC_011415.1 hypothetical protein 2093385 7000390 ECSE_2012 Escherichia coli SE11 hypothetical protein YP_002293287.1 2093110 D 409438 CDS YP_002293288.1 209919204 7000391 complement(2093386..2094045) 1 NC_011415.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins; serine/threonine protein phosphatase 1 2094045 pphA 7000391 pphA Escherichia coli SE11 serine/threonine protein phosphatase 1 YP_002293288.1 2093386 R 409438 CDS YP_002293289.1 209919205 7000392 complement(2094438..2094779) 1 NC_011415.1 hypothetical protein 2094779 7000392 ECSE_2014 Escherichia coli SE11 hypothetical protein YP_002293289.1 2094438 R 409438 CDS YP_002293290.1 209919206 7000393 complement(2094792..2095664) 1 NC_011415.1 putative transport protein 2095664 7000393 ECSE_2015 Escherichia coli SE11 putative transport protein YP_002293290.1 2094792 R 409438 CDS YP_002293291.1 209919207 7000394 complement(2095668..2096042) 1 NC_011415.1 hypothetical protein 2096042 7000394 ECSE_2016 Escherichia coli SE11 hypothetical protein YP_002293291.1 2095668 R 409438 CDS YP_002293292.1 209919208 7000395 2096181..2096411 1 NC_011415.1 DNA polymerase III subunit theta 2096411 7000395 ECSE_2017 Escherichia coli SE11 DNA polymerase III subunit theta YP_002293292.1 2096181 D 409438 CDS YP_002293293.1 209919209 7000396 2096513..2097169 1 NC_011415.1 hypothetical protein 2097169 7000396 ECSE_2018 Escherichia coli SE11 hypothetical protein YP_002293293.1 2096513 D 409438 CDS YP_002293294.1 209919210 7000397 2097193..2097855 1 NC_011415.1 3'-5' exonuclease activity on single or double-strand DNA; exodeoxyribonuclease X 2097855 7000397 ECSE_2019 Escherichia coli SE11 exodeoxyribonuclease X YP_002293294.1 2097193 D 409438 CDS YP_002293295.1 209919211 7000398 complement(2097852..2099912) 1 NC_011415.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues; protease 2 2099912 7000398 ECSE_2020 Escherichia coli SE11 protease 2 YP_002293295.1 2097852 R 409438 CDS YP_002293296.1 209919212 7000399 complement(2100121..2100780) 1 NC_011415.1 hypothetical protein 2100780 7000399 ECSE_2021 Escherichia coli SE11 hypothetical protein YP_002293296.1 2100121 R 409438 CDS YP_002293297.1 209919213 7000400 complement(2101107..2101463) 1 NC_011415.1 secreted protein; unknown function; hypothetical protein 2101463 7000400 ECSE_2022 Escherichia coli SE11 hypothetical protein YP_002293297.1 2101107 R 409438 CDS YP_002293298.1 209919214 7000401 complement(2101530..2101820) 1 NC_011415.1 DNA damage-inducible protein YebG 2101820 7000401 ECSE_2023 Escherichia coli SE11 DNA damage-inducible protein YebG YP_002293298.1 2101530 R 409438 CDS YP_002293299.1 209919215 7000402 2101954..2103132 1 NC_011415.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 2103132 purT 7000402 purT Escherichia coli SE11 phosphoribosylglycinamide formyltransferase 2 YP_002293299.1 2101954 D 409438 CDS YP_002293300.1 209919216 7000403 complement(2103188..2103829) 1 NC_011415.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 2103829 7000403 ECSE_2025 Escherichia coli SE11 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_002293300.1 2103188 R 409438 CDS YP_002293301.1 209919217 7000404 complement(2103866..2105677) 1 NC_011415.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2105677 7000404 ECSE_2026 Escherichia coli SE11 phosphogluconate dehydratase YP_002293301.1 2103866 R 409438 CDS YP_002293302.1 209919218 7000405 complement(2105912..2107387) 1 NC_011415.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2107387 7000405 ECSE_2027 Escherichia coli SE11 glucose-6-phosphate 1-dehydrogenase YP_002293302.1 2105912 R 409438 CDS YP_002293303.1 209919219 7000406 complement(2107553..2107702) 1 NC_011415.1 hypothetical protein 2107702 7000406 ECSE_2028 Escherichia coli SE11 hypothetical protein YP_002293303.1 2107553 R 409438 CDS YP_002293304.1 209919220 7000407 2107725..2108594 1 NC_011415.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 2108594 7000407 ECSE_2029 Escherichia coli SE11 DNA-binding transcriptional regulator HexR YP_002293304.1 2107725 D 409438 CDS YP_002293305.1 209919221 7000408 2108722..2110164 1 NC_011415.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2110164 7000408 ECSE_2030 Escherichia coli SE11 pyruvate kinase YP_002293305.1 2108722 D 409438 CDS YP_002293306.1 209919222 7000409 complement(2110296..2111267) 1 NC_011415.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2111267 7000409 ECSE_2031 Escherichia coli SE11 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002293306.1 2110296 R 409438 CDS YP_002293307.1 209919223 7000410 complement(2111387..2112709) 1 NC_011415.1 hypothetical protein 2112709 7000410 ECSE_2032 Escherichia coli SE11 hypothetical protein YP_002293307.1 2111387 R 409438 CDS YP_002293308.1 209919224 7000411 complement(2112725..2113711) 1 NC_011415.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component 2113711 znuA 7000411 znuA Escherichia coli SE11 high-affinity zinc transporter periplasmic component YP_002293308.1 2112725 R 409438 CDS YP_002293309.1 209919225 7000412 2113736..2114491 1 NC_011415.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter ATPase 2114491 znuC 7000412 znuC Escherichia coli SE11 high-affinity zinc transporter ATPase YP_002293309.1 2113736 D 409438 CDS YP_002293310.1 209919226 7000413 2114488..2115273 1 NC_011415.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component 2115273 znuB 7000413 znuB Escherichia coli SE11 high-affinity zinc transporter membrane component YP_002293310.1 2114488 D 409438 CDS YP_002293311.1 209919227 7000414 complement(2115420..2116430) 1 NC_011415.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2116430 ruvB 7000414 ruvB Escherichia coli SE11 Holliday junction DNA helicase RuvB YP_002293311.1 2115420 R 409438 CDS YP_002293312.1 209919228 7000415 complement(2116439..2117050) 1 NC_011415.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2117050 ruvA 7000415 ruvA Escherichia coli SE11 Holliday junction DNA helicase RuvA YP_002293312.1 2116439 R 409438 CDS YP_002293313.1 209919229 7000416 2117226..2117927 1 NC_011415.1 hypothetical protein 2117927 7000416 ECSE_2038 Escherichia coli SE11 hypothetical protein YP_002293313.1 2117226 D 409438 CDS YP_002293314.1 209919230 7000417 complement(2117929..2118450) 1 NC_011415.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2118450 ruvC 7000417 ruvC Escherichia coli SE11 Holliday junction resolvase YP_002293314.1 2117929 R 409438 CDS YP_002293315.1 209919231 7000418 complement(2118485..2119225) 1 NC_011415.1 hypothetical protein 2119225 7000418 ECSE_2040 Escherichia coli SE11 hypothetical protein YP_002293315.1 2118485 R 409438 CDS YP_002293316.1 209919232 7000419 complement(2119254..2119706) 1 NC_011415.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 2119706 ntpA 7000419 ntpA Escherichia coli SE11 dATP pyrophosphohydrolase YP_002293316.1 2119254 R 409438 CDS YP_002293317.1 209919233 7000420 complement(2119824..2121596) 1 NC_011415.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2121596 aspS 7000420 aspS Escherichia coli SE11 aspartyl-tRNA synthetase YP_002293317.1 2119824 R 409438 CDS YP_002293318.1 209919234 7000421 2121906..2122472 1 NC_011415.1 hypothetical protein 2122472 7000421 ECSE_2043 Escherichia coli SE11 hypothetical protein YP_002293318.1 2121906 D 409438 CDS YP_002293319.1 209919235 7000422 complement(2122554..2122730) 1 NC_011415.1 hypothetical protein 2122730 7000422 ECSE_2044 Escherichia coli SE11 hypothetical protein YP_002293319.1 2122554 R 409438 CDS YP_002293320.1 209919236 7000423 complement(2122893..2123477) 1 NC_011415.1 putative phage tail fiber assembly protein 2123477 7000423 ECSE_2045 Escherichia coli SE11 putative phage tail fiber assembly protein YP_002293320.1 2122893 R 409438 CDS YP_002293321.1 209919237 7000424 complement(2123477..2126557) 1 NC_011415.1 putative phage tail fiber protein 2126557 7000424 ECSE_2046 Escherichia coli SE11 putative phage tail fiber protein YP_002293321.1 2123477 R 409438 CDS YP_002293322.1 209919238 7000425 complement(2126616..2127191) 1 NC_011415.1 hypothetical protein 2127191 7000425 ECSE_2047 Escherichia coli SE11 hypothetical protein YP_002293322.1 2126616 R 409438 CDS YP_002293323.1 209919239 7000426 complement(2127286..2130783) 1 NC_011415.1 putative phage host specificity protein 2130783 7000426 ECSE_2048 Escherichia coli SE11 putative phage host specificity protein YP_002293323.1 2127286 R 409438 CDS YP_002293324.1 209919240 7000427 complement(2130844..2131515) 1 NC_011415.1 putative phage tail component 2131515 7000427 ECSE_2049 Escherichia coli SE11 putative phage tail component YP_002293324.1 2130844 R 409438 CDS YP_002293325.1 209919241 7000428 complement(2131413..2132156) 1 NC_011415.1 putative phage tail assembly protein 2132156 7000428 ECSE_2050 Escherichia coli SE11 putative phage tail assembly protein YP_002293325.1 2131413 R 409438 CDS YP_002293326.1 209919242 7000429 complement(2132162..2132860) 1 NC_011415.1 putative phage tail component 2132860 7000429 ECSE_2051 Escherichia coli SE11 putative phage tail component YP_002293326.1 2132162 R 409438 CDS YP_002293327.1 209919243 7000430 complement(2132860..2133189) 1 NC_011415.1 putative phage tail component 2133189 7000430 ECSE_2052 Escherichia coli SE11 putative phage tail component YP_002293327.1 2132860 R 409438 CDS YP_002293328.1 209919244 7000431 complement(2133186..2135747) 1 NC_011415.1 putative phage tail component 2135747 7000431 ECSE_2053 Escherichia coli SE11 putative phage tail component YP_002293328.1 2133186 R 409438 CDS YP_002293329.1 209919245 7000432 complement(2135740..2136174) 1 NC_011415.1 putative phage tail component 2136174 7000432 ECSE_2054 Escherichia coli SE11 putative phage tail component YP_002293329.1 2135740 R 409438 CDS YP_002293330.1 209919246 7000433 complement(2136156..2136578) 1 NC_011415.1 putative phage tail component 2136578 7000433 ECSE_2055 Escherichia coli SE11 putative phage tail component YP_002293330.1 2136156 R 409438 CDS YP_002293331.1 209919247 7000434 complement(2136594..2137334) 1 NC_011415.1 putative phage tail component 2137334 7000434 ECSE_2056 Escherichia coli SE11 putative phage tail component YP_002293331.1 2136594 R 409438 CDS YP_002293332.1 209919248 7000435 complement(2137342..2137737) 1 NC_011415.1 putative phage tail component 2137737 7000435 ECSE_2057 Escherichia coli SE11 putative phage tail component YP_002293332.1 2137342 R 409438 CDS YP_002293333.1 209919249 7000436 complement(2137734..2138312) 1 NC_011415.1 putative phage tail component 2138312 7000436 ECSE_2058 Escherichia coli SE11 putative phage tail component YP_002293333.1 2137734 R 409438 CDS YP_002293334.1 209919250 7000437 complement(2138324..2138677) 1 NC_011415.1 putative phage head-tail joining protein 2138677 7000437 ECSE_2059 Escherichia coli SE11 putative phage head-tail joining protein YP_002293334.1 2138324 R 409438 CDS YP_002293335.1 209919251 7000438 complement(2138689..2139084) 1 NC_011415.1 putative phage DNA packaging protein 2139084 7000438 ECSE_2060 Escherichia coli SE11 putative phage DNA packaging protein YP_002293335.1 2138689 R 409438 CDS YP_002293336.1 209919252 7000439 complement(2139126..2140151) 1 NC_011415.1 phage major capsid protein 2140151 7000439 ECSE_2061 Escherichia coli SE11 phage major capsid protein YP_002293336.1 2139126 R 409438 CDS YP_002293337.1 209919253 7000440 complement(2140207..2140539) 1 NC_011415.1 phage major capsid protein 2140539 7000440 ECSE_2062 Escherichia coli SE11 phage major capsid protein YP_002293337.1 2140207 R 409438 CDS YP_002293338.1 209919254 7000441 complement(2140549..2141868) 1 NC_011415.1 putative phage capsid structural protein 2141868 7000441 ECSE_2063 Escherichia coli SE11 putative phage capsid structural protein YP_002293338.1 2140549 R 409438 CDS YP_002293339.1 209919255 7000442 complement(2141849..2143450) 1 NC_011415.1 putative phage capsid structural protein 2143450 7000442 ECSE_2064 Escherichia coli SE11 putative phage capsid structural protein YP_002293339.1 2141849 R 409438 CDS YP_002293340.1 209919256 7000443 complement(2143447..2143653) 1 NC_011415.1 putative phage head-tail joining protein 2143653 7000443 ECSE_2065 Escherichia coli SE11 putative phage head-tail joining protein YP_002293340.1 2143447 R 409438 CDS YP_002293341.1 209919257 7000444 complement(2143650..2145575) 1 NC_011415.1 phage DNA packaging protein 2145575 7000444 ECSE_2066 Escherichia coli SE11 phage DNA packaging protein YP_002293341.1 2143650 R 409438 CDS YP_002293342.1 209919258 7000445 complement(2145550..2146095) 1 NC_011415.1 phage DNA packaging protein 2146095 7000445 ECSE_2067 Escherichia coli SE11 phage DNA packaging protein YP_002293342.1 2145550 R 409438 CDS YP_002293343.1 209919259 7000446 complement(2146336..2146521) 1 NC_011415.1 hypothetical protein 2146521 7000446 ECSE_2068 Escherichia coli SE11 hypothetical protein YP_002293343.1 2146336 R 409438 CDS YP_002293344.1 209919260 7000447 complement(2146702..2146914) 1 NC_011415.1 hypothetical protein 2146914 7000447 ECSE_2069 Escherichia coli SE11 hypothetical protein YP_002293344.1 2146702 R 409438 CDS YP_002293345.1 209919261 7000448 complement(2147153..2147407) 1 NC_011415.1 hypothetical protein 2147407 7000448 ECSE_2070 Escherichia coli SE11 hypothetical protein YP_002293345.1 2147153 R 409438 CDS YP_002293346.1 209919262 7000449 complement(2147350..2147727) 1 NC_011415.1 putative phage endolysin 2147727 7000449 ECSE_2071 Escherichia coli SE11 putative phage endolysin YP_002293346.1 2147350 R 409438 CDS YP_002293347.1 209919263 7000450 complement(2147733..2148008) 1 NC_011415.1 putative phage holin 2148008 7000450 ECSE_2072 Escherichia coli SE11 putative phage holin YP_002293347.1 2147733 R 409438 CDS YP_002293348.1 209919264 7000451 complement(2147998..2148390) 1 NC_011415.1 hypothetical protein 2148390 7000451 ECSE_2073 Escherichia coli SE11 hypothetical protein YP_002293348.1 2147998 R 409438 CDS YP_002293349.1 209919265 7000452 complement(2148479..2148631) 1 NC_011415.1 hypothetical protein 2148631 7000452 ECSE_2074 Escherichia coli SE11 hypothetical protein YP_002293349.1 2148479 R 409438 CDS YP_002293350.1 209919266 7000453 complement(2148628..2149053) 1 NC_011415.1 hypothetical protein 2149053 7000453 ECSE_2075 Escherichia coli SE11 hypothetical protein YP_002293350.1 2148628 R 409438 CDS YP_002293351.1 209919267 7000454 complement(2149297..2149575) 1 NC_011415.1 hypothetical protein 2149575 7000454 ECSE_2076 Escherichia coli SE11 hypothetical protein YP_002293351.1 2149297 R 409438 CDS YP_002293352.1 209919268 7003145 complement(2150067..2151113) 1 NC_011415.1 putative phage DNA methylase 2151113 7003145 ECSE_2077 Escherichia coli SE11 putative phage DNA methylase YP_002293352.1 2150067 R 409438 CDS YP_002293353.1 209919269 7000456 complement(2151264..2151461) 1 NC_011415.1 hypothetical protein 2151461 7000456 ECSE_2078 Escherichia coli SE11 hypothetical protein YP_002293353.1 2151264 R 409438 CDS YP_002293354.1 209919270 7000457 complement(2151865..2152845) 1 NC_011415.1 transposase 2152845 7000457 ECSE_2079 Escherichia coli SE11 transposase YP_002293354.1 2151865 R 409438 CDS YP_002293355.1 209919271 7000458 2153243..2154325 1 NC_011415.1 putative outer membrane porin protein 2154325 7000458 ECSE_2080 Escherichia coli SE11 putative outer membrane porin protein YP_002293355.1 2153243 D 409438 CDS YP_002293356.1 209919272 7000459 complement(2154513..2154896) 1 NC_011415.1 putative phage antitermination protein 2154896 7000459 ECSE_2081 Escherichia coli SE11 putative phage antitermination protein YP_002293356.1 2154513 R 409438 CDS YP_002293357.1 209919273 7000460 complement(2154896..2155153) 1 NC_011415.1 hypothetical protein 2155153 7000460 ECSE_2082 Escherichia coli SE11 hypothetical protein YP_002293357.1 2154896 R 409438 CDS YP_002293358.1 209919274 7000461 complement(2155150..2156541) 1 NC_011415.1 putative phage helicase 2156541 7000461 ECSE_2083 Escherichia coli SE11 putative phage helicase YP_002293358.1 2155150 R 409438 CDS YP_002293359.1 209919275 7000462 complement(2156538..2157416) 1 NC_011415.1 putative phage replication protein 2157416 7000462 ECSE_2084 Escherichia coli SE11 putative phage replication protein YP_002293359.1 2156538 R 409438 CDS YP_002293360.1 209919276 7000463 complement(2157427..2158251) 1 NC_011415.1 putative phage replication protein 2158251 7000463 ECSE_2085 Escherichia coli SE11 putative phage replication protein YP_002293360.1 2157427 R 409438 CDS YP_002293361.1 209919277 7000464 complement(2158248..2158472) 1 NC_011415.1 hypothetical protein 2158472 7000464 ECSE_2086 Escherichia coli SE11 hypothetical protein YP_002293361.1 2158248 R 409438 CDS YP_002293362.1 209919278 7000465 complement(2158469..2158702) 1 NC_011415.1 hypothetical protein 2158702 7000465 ECSE_2087 Escherichia coli SE11 hypothetical protein YP_002293362.1 2158469 R 409438 CDS YP_002293363.1 209919279 7000466 complement(2158695..2159360) 1 NC_011415.1 hypothetical protein 2159360 7000466 ECSE_2088 Escherichia coli SE11 hypothetical protein YP_002293363.1 2158695 R 409438 CDS YP_002293364.1 209919280 7000467 complement(2159474..2160181) 1 NC_011415.1 hypothetical protein 2160181 7000467 ECSE_2089 Escherichia coli SE11 hypothetical protein YP_002293364.1 2159474 R 409438 CDS YP_002293365.1 209919281 7000468 2160301..2160594 1 NC_011415.1 hypothetical protein 2160594 7000468 ECSE_2090 Escherichia coli SE11 hypothetical protein YP_002293365.1 2160301 D 409438 CDS YP_002293366.1 209919282 7000469 complement(2160665..2160874) 1 NC_011415.1 hypothetical protein 2160874 7000469 ECSE_2091 Escherichia coli SE11 hypothetical protein YP_002293366.1 2160665 R 409438 CDS YP_002293367.1 209919283 7000470 2160986..2161642 1 NC_011415.1 putative phage repressor 2161642 7000470 ECSE_2092 Escherichia coli SE11 putative phage repressor YP_002293367.1 2160986 D 409438 CDS YP_002293368.1 209919284 7000471 2161746..2162249 1 NC_011415.1 hypothetical protein 2162249 7000471 ECSE_2093 Escherichia coli SE11 hypothetical protein YP_002293368.1 2161746 D 409438 CDS YP_002293369.1 209919285 7000472 2162378..2162743 1 NC_011415.1 hypothetical protein 2162743 7000472 ECSE_2094 Escherichia coli SE11 hypothetical protein YP_002293369.1 2162378 D 409438 CDS YP_002293370.1 209919286 7000473 2162940..2163128 1 NC_011415.1 hypothetical protein 2163128 7000473 ECSE_2095 Escherichia coli SE11 hypothetical protein YP_002293370.1 2162940 D 409438 CDS YP_002293371.1 209919287 7000474 2163125..2163706 1 NC_011415.1 hypothetical protein 2163706 7000474 ECSE_2096 Escherichia coli SE11 hypothetical protein YP_002293371.1 2163125 D 409438 CDS YP_002293372.1 209919288 7000475 2164069..2164896 1 NC_011415.1 putative phage serine protease 2164896 7000475 ECSE_2097 Escherichia coli SE11 putative phage serine protease YP_002293372.1 2164069 D 409438 CDS YP_002293373.1 209919289 7000476 2164865..2165308 1 NC_011415.1 hypothetical protein 2165308 7000476 ECSE_2098 Escherichia coli SE11 hypothetical protein YP_002293373.1 2164865 D 409438 CDS YP_002293374.1 209919290 7000477 2165280..2165582 1 NC_011415.1 hypothetical protein 2165582 7000477 ECSE_2099 Escherichia coli SE11 hypothetical protein YP_002293374.1 2165280 D 409438 CDS YP_002293375.1 209919291 7000478 2165586..2165732 1 NC_011415.1 hypothetical protein 2165732 7000478 ECSE_2100 Escherichia coli SE11 hypothetical protein YP_002293375.1 2165586 D 409438 CDS YP_002293376.1 209919292 7000479 2165741..2165977 1 NC_011415.1 putative phage excisionase 2165977 7000479 ECSE_2101 Escherichia coli SE11 putative phage excisionase YP_002293376.1 2165741 D 409438 CDS YP_002293377.1 209919293 7000480 2166033..2167346 1 NC_011415.1 phage integrase 2167346 7000480 ECSE_2102 Escherichia coli SE11 phage integrase YP_002293377.1 2166033 D 409438 CDS YP_002293378.1 209919294 7000481 2167373..2168098 1 NC_011415.1 hypothetical protein 2168098 7000481 ECSE_2103 Escherichia coli SE11 hypothetical protein YP_002293378.1 2167373 D 409438 CDS YP_002293379.1 209919295 7000482 2168151..2168546 1 NC_011415.1 hypothetical protein 2168546 7000482 ECSE_2104 Escherichia coli SE11 hypothetical protein YP_002293379.1 2168151 D 409438 CDS YP_002293380.1 209919296 7000483 2168587..2169330 1 NC_011415.1 hypothetical protein 2169330 7000483 ECSE_2105 Escherichia coli SE11 hypothetical protein YP_002293380.1 2168587 D 409438 CDS YP_002293381.1 209919297 7000484 2169327..2170298 1 NC_011415.1 hypothetical protein 2170298 7000484 ECSE_2106 Escherichia coli SE11 hypothetical protein YP_002293381.1 2169327 D 409438 CDS YP_002293382.1 209919298 7000485 complement(2170463..2172910) 1 NC_011415.1 biotin sulfoxide reductase 2172910 7000485 ECSE_2107 Escherichia coli SE11 biotin sulfoxide reductase YP_002293382.1 2170463 R 409438 CDS YP_002293383.1 209919299 7000486 complement(2172917..2174017) 1 NC_011415.1 cytochrome c-type protein 2174017 7000486 ECSE_2108 Escherichia coli SE11 cytochrome c-type protein YP_002293383.1 2172917 R 409438 CDS YP_002293384.1 209919300 7000487 complement(2174405..2175151) 1 NC_011415.1 copper homeostasis protein CutC 2175151 7000487 ECSE_2109 Escherichia coli SE11 copper homeostasis protein CutC YP_002293384.1 2174405 R 409438 CDS YP_002293385.1 209919301 7000488 complement(2175165..2175737) 1 NC_011415.1 hypothetical protein 2175737 7000488 ECSE_2110 Escherichia coli SE11 hypothetical protein YP_002293385.1 2175165 R 409438 CDS YP_002293386.1 209919302 7000489 2175947..2177680 1 NC_011415.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2177680 argS 7000489 argS Escherichia coli SE11 arginyl-tRNA synthetase YP_002293386.1 2175947 D 409438 CDS YP_002293387.1 209919303 7000490 2177836..2178345 1 NC_011415.1 hypothetical protein 2178345 7000490 ECSE_2112 Escherichia coli SE11 hypothetical protein YP_002293387.1 2177836 D 409438 CDS YP_002293388.1 209919304 7000491 complement(2178465..2178857) 1 NC_011415.1 flagellar protein FlhE 2178857 7000491 ECSE_2113 Escherichia coli SE11 flagellar protein FlhE YP_002293388.1 2178465 R 409438 CDS YP_002293389.1 209919305 7000492 complement(2178857..2180935) 1 NC_011415.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2180935 flhA 7000492 flhA Escherichia coli SE11 flagellar biosynthesis protein FlhA YP_002293389.1 2178857 R 409438 CDS YP_002293390.1 209919306 7000493 complement(2180928..2182076) 1 NC_011415.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 2182076 flhB 7000493 flhB Escherichia coli SE11 flagellar biosynthesis protein FlhB YP_002293390.1 2180928 R 409438 CDS YP_002293391.1 209919307 7000494 complement(2182278..2182952) 1 NC_011415.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation; chemotaxis regulator CheZ 2182952 7000494 ECSE_2116 Escherichia coli SE11 chemotaxis regulator CheZ YP_002293391.1 2182278 R 409438 CDS YP_002293392.1 209919308 7000495 complement(2182933..2183322) 1 NC_011415.1 chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; chemotaxis regulatory protein CheY 2183322 7000495 ECSE_2117 Escherichia coli SE11 chemotaxis regulatory protein CheY YP_002293392.1 2182933 R 409438 CDS YP_002293393.1 209919309 7000496 complement(2183337..2184386) 1 NC_011415.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2184386 7000496 ECSE_2118 Escherichia coli SE11 chemotaxis-specific methylesterase YP_002293393.1 2183337 R 409438 CDS YP_002293394.1 209919310 7000497 complement(2184389..2185249) 1 NC_011415.1 methylates the MCP; chemotaxis methyltransferase CheR 2185249 7000497 ECSE_2119 Escherichia coli SE11 chemotaxis methyltransferase CheR YP_002293394.1 2184389 R 409438 CDS YP_002293395.1 209919311 7000498 complement(2185268..2186869) 1 NC_011415.1 mediates taxis toward dipeptides; methyl-accepting protein IV 2186869 7000498 ECSE_2120 Escherichia coli SE11 methyl-accepting protein IV YP_002293395.1 2185268 R 409438 CDS YP_002293396.1 209919312 7000499 complement(2186915..2188576) 1 NC_011415.1 methyl-accepting chemotaxis protein II 2188576 7000499 ECSE_2121 Escherichia coli SE11 methyl-accepting chemotaxis protein II YP_002293396.1 2186915 R 409438 CDS YP_002293397.1 209919313 7000500 complement(2188721..2189224) 1 NC_011415.1 purine-binding chemotaxis protein 2189224 7000500 ECSE_2122 Escherichia coli SE11 purine-binding chemotaxis protein YP_002293397.1 2188721 R 409438 CDS YP_002293398.1 209919314 7000501 complement(2189245..2191209) 1 NC_011415.1 chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component; chemotaxis protein CheA 2191209 7000501 ECSE_2123 Escherichia coli SE11 chemotaxis protein CheA YP_002293398.1 2189245 R 409438 CDS YP_002293399.1 209919315 7000502 complement(2191214..2192140) 1 NC_011415.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 2192140 motB 7000502 motB Escherichia coli SE11 flagellar motor protein MotB YP_002293399.1 2191214 R 409438 CDS YP_002293400.1 209919316 7000503 complement(2192137..2193024) 1 NC_011415.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2193024 7000503 ECSE_2125 Escherichia coli SE11 flagellar motor protein MotA YP_002293400.1 2192137 R 409438 CDS YP_002293401.1 209919317 7000504 complement(2193151..2193729) 1 NC_011415.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 2193729 7000504 ECSE_2126 Escherichia coli SE11 transcriptional activator FlhC YP_002293401.1 2193151 R 409438 CDS YP_002293402.1 209919318 7000505 complement(2193732..2194091) 1 NC_011415.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems; transcriptional activator FlhD 2194091 7000505 ECSE_2127 Escherichia coli SE11 transcriptional activator FlhD YP_002293402.1 2193732 R 409438 CDS YP_002293403.1 209919319 7000506 2194862..2195290 1 NC_011415.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspC 2195290 7000506 ECSE_2128 Escherichia coli SE11 universal stress protein UspC YP_002293403.1 2194862 D 409438 CDS YP_002293404.1 209919320 7000507 complement(2195297..2196721) 1 NC_011415.1 trehalose-6-phosphate synthase 2196721 7000507 ECSE_2129 Escherichia coli SE11 trehalose-6-phosphate synthase YP_002293404.1 2195297 R 409438 CDS YP_002293405.1 209919321 7000508 complement(2196696..2197496) 1 NC_011415.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature; trehalose-6-phosphate phosphatase 2197496 7000508 ECSE_2130 Escherichia coli SE11 trehalose-6-phosphate phosphatase YP_002293405.1 2196696 R 409438 CDS YP_002293406.1 209919322 7000509 complement(2197663..2198652) 1 NC_011415.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter permease 2198652 araH 7000509 araH Escherichia coli SE11 L-arabinose transporter permease YP_002293406.1 2197663 R 409438 CDS YP_002293407.1 209919323 7000510 complement(2198664..2200178) 1 NC_011415.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose; L-arabinose transporter ATP-binding protein 2200178 araG 7000510 araG Escherichia coli SE11 L-arabinose transporter ATP-binding protein YP_002293407.1 2198664 R 409438 CDS YP_002293408.1 209919324 7000511 complement(2200248..2201288) 1 NC_011415.1 L-arabinose ABC transporter substrate binding component 2201288 7000511 ECSE_2133 Escherichia coli SE11 L-arabinose ABC transporter substrate binding component YP_002293408.1 2200248 R 409438 CDS YP_002293409.1 209919325 7000512 2202034..2202537 1 NC_011415.1 ferritin 2202537 7000512 ECSE_2134 Escherichia coli SE11 ferritin YP_002293409.1 2202034 D 409438 CDS YP_002293410.1 209919326 7000513 complement(2202616..2202867) 1 NC_011415.1 hypothetical protein 2202867 7000513 ECSE_2135 Escherichia coli SE11 hypothetical protein YP_002293410.1 2202616 R 409438 CDS YP_002293411.1 209919327 7000514 2203331..2203654 1 NC_011415.1 hypothetical protein 2203654 7000514 ECSE_2136 Escherichia coli SE11 hypothetical protein YP_002293411.1 2203331 D 409438 CDS YP_002293412.1 209919328 7000515 complement(2203660..2203800) 1 NC_011415.1 hypothetical protein 2203800 7000515 ECSE_2137 Escherichia coli SE11 hypothetical protein YP_002293412.1 2203660 R 409438 CDS YP_002293413.1 209919329 7000516 2203810..2204322 1 NC_011415.1 cytoplasmic iron storage protein; ferritin 2204322 7000516 ECSE_2138 Escherichia coli SE11 ferritin YP_002293413.1 2203810 D 409438 CDS YP_002293414.1 209919330 7000517 complement(2204360..2204599) 1 NC_011415.1 hypothetical protein 2204599 7000517 ECSE_2139 Escherichia coli SE11 hypothetical protein YP_002293414.1 2204360 R 409438 CDS YP_002293415.1 209919331 7000518 2204790..2206001 1 NC_011415.1 tyrosine-specific transport protein 2206001 7000518 ECSE_2140 Escherichia coli SE11 tyrosine-specific transport protein YP_002293415.1 2204790 D 409438 CDS YP_002293416.1 209919332 7000519 complement(2206063..2206728) 1 NC_011415.1 hypothetical protein 2206728 7000519 ECSE_2141 Escherichia coli SE11 hypothetical protein YP_002293416.1 2206063 R 409438 CDS YP_002293417.1 209919333 7003142 complement(2207377..2207925) 1 NC_011415.1 phosphatidylglycerophosphate synthetase 2207925 7003142 ECSE_2142 Escherichia coli SE11 phosphatidylglycerophosphate synthetase YP_002293417.1 2207377 R 409438 CDS YP_002293418.1 209919334 7000521 complement(2207982..2209814) 1 NC_011415.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2209814 uvrC 7000521 uvrC Escherichia coli SE11 excinuclease ABC subunit C YP_002293418.1 2207982 R 409438 CDS YP_002293419.1 209919335 7000522 complement(2209811..2210467) 1 NC_011415.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system; response regulator 2210467 7000522 ECSE_2144 Escherichia coli SE11 response regulator YP_002293419.1 2209811 R 409438 CDS YP_002293420.1 209919336 7000523 complement(2210706..2210834) 1 NC_011415.1 hypothetical protein 2210834 7000523 ECSE_2145 Escherichia coli SE11 hypothetical protein YP_002293420.1 2210706 R 409438 CDS YP_002293421.1 209919337 7000524 2210926..2211150 1 NC_011415.1 hypothetical protein 2211150 7000524 ECSE_2146 Escherichia coli SE11 hypothetical protein YP_002293421.1 2210926 D 409438 CDS YP_002293422.1 209919338 7000525 complement(2211217..2211951) 1 NC_011415.1 regulates genes involved in cell division; DNA-binding transcriptional activator SdiA 2211951 7000525 ECSE_2147 Escherichia coli SE11 DNA-binding transcriptional activator SdiA YP_002293422.1 2211217 R 409438 CDS YP_002293423.1 209919339 7000526 complement(2212169..2212921) 1 NC_011415.1 putative amino-acid ABC transporter ATP-binding protein YecC 2212921 7000526 ECSE_2148 Escherichia coli SE11 putative amino-acid ABC transporter ATP-binding protein YecC YP_002293423.1 2212169 R 409438 CDS YP_002293424.1 209919340 7000527 complement(2212918..2213586) 1 NC_011415.1 putative amino acid ABC transporter permease 2213586 7000527 ECSE_2149 Escherichia coli SE11 putative amino acid ABC transporter permease YP_002293424.1 2212918 R 409438 CDS YP_002293425.1 209919341 7000528 complement(2213601..2214683) 1 NC_011415.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2214683 7000528 ECSE_2150 Escherichia coli SE11 D-cysteine desulfhydrase YP_002293425.1 2213601 R 409438 CDS YP_002293426.1 209919342 7000529 complement(2214692..2215549) 1 NC_011415.1 cystine transporter subunit 2215549 7000529 ECSE_2151 Escherichia coli SE11 cystine transporter subunit YP_002293426.1 2214692 R 409438 CDS YP_002293427.1 209919343 7000530 complement(2215580..2216167) 1 NC_011415.1 expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence; flagella biosynthesis protein FliZ 2216167 7000530 ECSE_2152 Escherichia coli SE11 flagella biosynthesis protein FliZ YP_002293427.1 2215580 R 409438 CDS YP_002293428.1 209919344 7000531 complement(2216177..2216896) 1 NC_011415.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 2216896 fliA 7000531 fliA Escherichia coli SE11 flagellar biosynthesis sigma factor YP_002293428.1 2216177 R 409438 CDS YP_002293429.1 209919345 7000532 complement(2217216..2218955) 1 NC_011415.1 structural flagella protein; individual Salmonella serotypes usually alternate between the production of 2 antigenic forms of flagella, termed phase 1 and phase 2, each specified by separate structural genes; flagellin 2218955 7000532 ECSE_2154 Escherichia coli SE11 flagellin YP_002293429.1 2217216 R 409438 CDS YP_002293430.1 209919346 7000533 2219222..2220628 1 NC_011415.1 involved in flagellin assembly; flagellar capping protein 2220628 fliD 7000533 fliD Escherichia coli SE11 flagellar capping protein YP_002293430.1 2219222 D 409438 CDS YP_002293431.1 209919347 7000534 2220653..2221063 1 NC_011415.1 flagellin specific chaperone; flagellar protein FliS 2221063 fliS 7000534 fliS Escherichia coli SE11 flagellar protein FliS YP_002293431.1 2220653 D 409438 CDS YP_002293432.1 209919348 7000535 2221063..2221428 1 NC_011415.1 binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family; flagellar biosynthesis protein FliT 2221428 7000535 ECSE_2157 Escherichia coli SE11 flagellar biosynthesis protein FliT YP_002293432.1 2221063 D 409438 CDS YP_002293433.1 209919349 7000536 2221506..2222993 1 NC_011415.1 converts 1,4-alpha-D-glucans to maltodextrin; cytoplasmic alpha-amylase 2222993 7000536 ECSE_2158 Escherichia coli SE11 cytoplasmic alpha-amylase YP_002293433.1 2221506 D 409438 CDS YP_002293434.1 209919350 7000537 complement(2223027..2223443) 1 NC_011415.1 hypothetical protein 2223443 7000537 ECSE_2159 Escherichia coli SE11 hypothetical protein YP_002293434.1 2223027 R 409438 CDS YP_002293435.1 209919351 7000538 2223627..2224832 1 NC_011415.1 putative inner membrane protein 2224832 7000538 ECSE_2160 Escherichia coli SE11 putative inner membrane protein YP_002293435.1 2223627 D 409438 CDS YP_002293436.1 209919352 7000539 2224829..2225062 1 NC_011415.1 hypothetical protein 2225062 7000539 ECSE_2161 Escherichia coli SE11 hypothetical protein YP_002293436.1 2224829 D 409438 CDS YP_002293437.1 209919353 7000540 2225171..2225842 1 NC_011415.1 hypothetical protein 2225842 7000540 ECSE_2162 Escherichia coli SE11 hypothetical protein YP_002293437.1 2225171 D 409438 CDS YP_002293438.1 209919354 7000541 complement(2225882..2227030) 1 NC_011415.1 putative transposase 2227030 7000541 ECSE_2163 Escherichia coli SE11 putative transposase YP_002293438.1 2225882 R 409438 CDS YP_002293439.1 209919355 7000542 2227403..2227585 1 NC_011415.1 hypothetical protein 2227585 7000542 ECSE_2164 Escherichia coli SE11 hypothetical protein YP_002293439.1 2227403 D 409438 CDS YP_002293440.1 209919356 7000543 complement(2228475..2229272) 1 NC_011415.1 putative transcriptional regulator 2229272 7000543 ECSE_2165 Escherichia coli SE11 putative transcriptional regulator YP_002293440.1 2228475 R 409438 CDS YP_002293441.1 209919357 7000544 complement(2229282..2229833) 1 NC_011415.1 DLP12 prophage; similar to PEBP/RK1P protein family in eukaryotes that inhibits MEK phosphorylation by Raf-1; crystal structure suggests similar properties but exact function is unknown; putative kinase inhibitor 2229833 7000544 ECSE_2166 Escherichia coli SE11 putative kinase inhibitor YP_002293441.1 2229282 R 409438 CDS YP_002293442.1 209919358 7000545 complement(2230002..2230499) 1 NC_011415.1 member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation; multidrug efflux protein 2230499 emrE 7000545 emrE Escherichia coli SE11 multidrug efflux protein YP_002293442.1 2230002 R 409438 CDS YP_002293443.1 209919359 7000546 complement(2230668..2230982) 1 NC_011415.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2230982 fliE 7000546 fliE Escherichia coli SE11 flagellar hook-basal body protein FliE YP_002293443.1 2230668 R 409438 CDS YP_002293444.1 209919360 7000547 2231197..2232855 1 NC_011415.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2232855 fliF 7000547 fliF Escherichia coli SE11 flagellar MS-ring protein YP_002293444.1 2231197 D 409438 CDS YP_002293445.1 209919361 7000548 2232848..2233843 1 NC_011415.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2233843 fliG 7000548 fliG Escherichia coli SE11 flagellar motor switch protein G YP_002293445.1 2232848 D 409438 CDS YP_002293446.1 209919362 7000549 2233836..2234522 1 NC_011415.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 2234522 fliH 7000549 fliH Escherichia coli SE11 flagellar assembly protein H YP_002293446.1 2233836 D 409438 CDS YP_002293447.1 209919363 7000550 2234522..2235895 1 NC_011415.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 2235895 fliI 7000550 fliI Escherichia coli SE11 flagellum-specific ATP synthase YP_002293447.1 2234522 D 409438 CDS YP_002293448.1 209919364 7000551 2235914..2236357 1 NC_011415.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 2236357 fliJ 7000551 fliJ Escherichia coli SE11 flagellar biosynthesis chaperone YP_002293448.1 2235914 D 409438 CDS YP_002293449.1 209919365 7000552 2236354..2237481 1 NC_011415.1 flagellar hook-length control protein 2237481 7000552 ECSE_2174 Escherichia coli SE11 flagellar hook-length control protein YP_002293449.1 2236354 D 409438 CDS YP_002293450.1 209919366 7000553 2237586..2238050 1 NC_011415.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 2238050 fliL 7000553 fliL Escherichia coli SE11 flagellar basal body-associated protein FliL YP_002293450.1 2237586 D 409438 CDS YP_002293451.1 209919367 7000554 2238055..2239059 1 NC_011415.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 2239059 fliM 7000554 fliM Escherichia coli SE11 flagellar motor switch protein FliM YP_002293451.1 2238055 D 409438 CDS YP_002293452.1 209919368 7000555 2239056..2239469 1 NC_011415.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliN 2239469 fliN 7000555 fliN Escherichia coli SE11 flagellar motor switch protein FliN YP_002293452.1 2239056 D 409438 CDS YP_002293453.1 209919369 7000556 2239469..2239837 1 NC_011415.1 with FlhA, FlhB, FliP, FliQ and FliR is one of the membrane components of the flagellar export apparatus; flagellar biosynthesis protein FliO 2239837 7000556 ECSE_2178 Escherichia coli SE11 flagellar biosynthesis protein FliO YP_002293453.1 2239469 D 409438 CDS YP_002293454.1 209919370 7000557 2239837..2240574 1 NC_011415.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2240574 fliP 7000557 fliP Escherichia coli SE11 flagellar biosynthesis protein FliP YP_002293454.1 2239837 D 409438 CDS YP_002293455.1 209919371 7000558 2240584..2240853 1 NC_011415.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 2240853 fliQ 7000558 fliQ Escherichia coli SE11 flagellar biosynthesis protein FliQ YP_002293455.1 2240584 D 409438 CDS YP_002293456.1 209919372 7000559 2240862..2241647 1 NC_011415.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2241647 fliR 7000559 fliR Escherichia coli SE11 flagellar biosynthesis protein FliR YP_002293456.1 2240862 D 409438 CDS YP_002293457.1 209919373 7000560 2241937..2242560 1 NC_011415.1 putative transcriptional regulator for capsule biosynthesis 2242560 7000560 ECSE_2182 Escherichia coli SE11 putative transcriptional regulator for capsule biosynthesis YP_002293457.1 2241937 D 409438 CDS YP_002293458.1 209919374 7000561 complement(2242604..2242792) 1 NC_011415.1 hypothetical protein 2242792 7000561 ECSE_2183 Escherichia coli SE11 hypothetical protein YP_002293458.1 2242604 R 409438 CDS YP_002293459.1 209919375 7000562 2242955..2243182 1 NC_011415.1 hypothetical protein 2243182 7000562 ECSE_2184 Escherichia coli SE11 hypothetical protein YP_002293459.1 2242955 D 409438 CDS YP_002293460.1 209919376 7000563 2243480..2244295 1 NC_011415.1 catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate; mannosyl-3-phosphoglycerate phosphatase 2244295 7000563 ECSE_2185 Escherichia coli SE11 mannosyl-3-phosphoglycerate phosphatase YP_002293460.1 2243480 D 409438 CDS YP_002293461.1 209919377 7000564 complement(2244292..2245986) 1 NC_011415.1 hypothetical protein 2245986 7000564 ECSE_2186 Escherichia coli SE11 hypothetical protein YP_002293461.1 2244292 R 409438 CDS YP_002293462.1 209919378 7000565 complement(2246157..2246339) 1 NC_011415.1 hypothetical protein 2246339 7000565 ECSE_2187 Escherichia coli SE11 hypothetical protein YP_002293462.1 2246157 R 409438 CDS YP_002293463.1 209919379 7000566 complement(2246418..2247335) 1 NC_011415.1 hypothetical protein 2247335 7000566 ECSE_2188 Escherichia coli SE11 hypothetical protein YP_002293463.1 2246418 R 409438 CDS YP_002293464.1 209919380 7000567 2247508..2248428 1 NC_011415.1 hypothetical protein 2248428 7000567 ECSE_2189 Escherichia coli SE11 hypothetical protein YP_002293464.1 2247508 D 409438 CDS YP_002293465.1 209919381 7000568 complement(2248417..2248887) 1 NC_011415.1 DNA mismatch endonuclease 2248887 7000568 ECSE_2190 Escherichia coli SE11 DNA mismatch endonuclease YP_002293465.1 2248417 R 409438 CDS YP_002293466.1 209919382 7000569 complement(2248868..2250286) 1 NC_011415.1 DNA cytosine methylase 2250286 7000569 ECSE_2191 Escherichia coli SE11 DNA cytosine methylase YP_002293466.1 2248868 R 409438 CDS YP_002293467.1 209919383 7000570 complement(2250353..2251048) 1 NC_011415.1 hypothetical protein 2251048 7000570 ECSE_2192 Escherichia coli SE11 hypothetical protein YP_002293467.1 2250353 R 409438 CDS YP_002293468.1 209919384 7000571 complement(2251088..2251471) 1 NC_011415.1 hypothetical protein 2251471 7000571 ECSE_2193 Escherichia coli SE11 hypothetical protein YP_002293468.1 2251088 R 409438 CDS YP_002293469.1 209919385 7000572 2252020..2253183 1 NC_011415.1 putative porin 2253183 7000572 ECSE_2194 Escherichia coli SE11 putative porin YP_002293469.1 2252020 D 409438 CDS YP_002293470.1 209919386 7000573 complement(2253217..2253627) 1 NC_011415.1 hypothetical protein 2253627 7000573 ECSE_2195 Escherichia coli SE11 hypothetical protein YP_002293470.1 2253217 R 409438 CDS YP_002293471.1 209919387 7000574 2253774..2254625 1 NC_011415.1 Hsp31 stabilizes early unfolding protein intermediates under severe heat stress; chaperone protein HchA 2254625 7000574 ECSE_2196 Escherichia coli SE11 chaperone protein HchA YP_002293471.1 2253774 D 409438 CDS YP_002293472.1 209919388 7000575 complement(2254733..2256091) 1 NC_011415.1 two-component sensor kinase 2256091 7000575 ECSE_2197 Escherichia coli SE11 two-component sensor kinase YP_002293472.1 2254733 R 409438 CDS YP_002293473.1 209919389 7000576 complement(2256091..2256762) 1 NC_011415.1 induced by CusR in the presence of copper; YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW; yedVW is one of four copper regulons found in E. coli; part of the copper homeostasis mechanism; confers resistance to copper and several drugs when induced; transcriptional regulatory protein YedW 2256762 7000576 ECSE_2198 Escherichia coli SE11 transcriptional regulatory protein YedW YP_002293473.1 2256091 R 409438 CDS YP_002293474.1 209919390 7000577 2256895..2257308 1 NC_011415.1 hypothetical protein 2257308 7000577 ECSE_2199 Escherichia coli SE11 hypothetical protein YP_002293474.1 2256895 D 409438 CDS YP_002293475.1 209919391 7000578 2257417..2258421 1 NC_011415.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 2258421 7000578 ECSE_2200 Escherichia coli SE11 putative sulfite oxidase subunit YedY YP_002293475.1 2257417 D 409438 CDS YP_002293476.1 209919392 7000579 2258422..2259057 1 NC_011415.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 2259057 7000579 ECSE_2201 Escherichia coli SE11 putative sulfite oxidase subunit YedZ YP_002293476.1 2258422 D 409438 CDS YP_002293477.1 209919393 7000580 2259314..2259964 1 NC_011415.1 hypothetical protein 2259964 7000580 ECSE_2202 Escherichia coli SE11 hypothetical protein YP_002293477.1 2259314 D 409438 CDS YP_002293478.1 209919394 7000581 2260306..2260836 1 NC_011415.1 putative cytochrome 2260836 7000581 ECSE_2203 Escherichia coli SE11 putative cytochrome YP_002293478.1 2260306 D 409438 CDS YP_002293479.1 209919395 7000582 complement(2261815..2262819) 1 NC_011415.1 hypothetical protein 2262819 7000582 ECSE_2204 Escherichia coli SE11 hypothetical protein YP_002293479.1 2261815 R 409438 CDS YP_002293480.1 209919396 7000583 complement(2262825..2263868) 1 NC_011415.1 hypothetical protein 2263868 7000583 ECSE_2205 Escherichia coli SE11 hypothetical protein YP_002293480.1 2262825 R 409438 CDS YP_002293481.1 209919397 7000584 complement(2263872..2264084) 1 NC_011415.1 hypothetical protein 2264084 7000584 ECSE_2206 Escherichia coli SE11 hypothetical protein YP_002293481.1 2263872 R 409438 CDS YP_002293482.1 209919398 7000585 complement(2264322..2264750) 1 NC_011415.1 hypothetical protein 2264750 7000585 ECSE_2207 Escherichia coli SE11 hypothetical protein YP_002293482.1 2264322 R 409438 CDS YP_002293483.1 209919399 7000586 complement(2264747..2266387) 1 NC_011415.1 hypothetical protein 2266387 7000586 ECSE_2208 Escherichia coli SE11 hypothetical protein YP_002293483.1 2264747 R 409438 CDS YP_002293484.1 209919400 7000587 complement(2266496..2266777) 1 NC_011415.1 hypothetical protein 2266777 7000587 ECSE_2209 Escherichia coli SE11 hypothetical protein YP_002293484.1 2266496 R 409438 CDS YP_002293485.1 209919401 7000588 complement(2266790..2267302) 1 NC_011415.1 hypothetical protein 2267302 7000588 ECSE_2210 Escherichia coli SE11 hypothetical protein YP_002293485.1 2266790 R 409438 CDS YP_002293486.1 209919402 7000589 complement(2267320..2268825) 1 NC_011415.1 putative phage tail sheath protein 2268825 7000589 ECSE_2211 Escherichia coli SE11 putative phage tail sheath protein YP_002293486.1 2267320 R 409438 CDS YP_002293487.1 209919403 7000590 complement(2268837..2269985) 1 NC_011415.1 putative phage tail protein 2269985 7000590 ECSE_2212 Escherichia coli SE11 putative phage tail protein YP_002293487.1 2268837 R 409438 CDS YP_002293488.1 209919404 7000591 complement(2269978..2270604) 1 NC_011415.1 putative phage tail protein 2270604 7000591 ECSE_2213 Escherichia coli SE11 putative phage tail protein YP_002293488.1 2269978 R 409438 CDS YP_002293489.1 209919405 7000592 complement(2270607..2271527) 1 NC_011415.1 hypothetical protein 2271527 7000592 ECSE_2214 Escherichia coli SE11 hypothetical protein YP_002293489.1 2270607 R 409438 CDS YP_002293490.1 209919406 7000593 complement(2271524..2271865) 1 NC_011415.1 hypothetical protein 2271865 7000593 ECSE_2215 Escherichia coli SE11 hypothetical protein YP_002293490.1 2271524 R 409438 CDS YP_002293491.1 209919407 7000594 complement(2271868..2272773) 1 NC_011415.1 putative phage baseplate assembly protein 2272773 7000594 ECSE_2216 Escherichia coli SE11 putative phage baseplate assembly protein YP_002293491.1 2271868 R 409438 CDS YP_002293492.1 209919408 7000595 complement(2272754..2273290) 1 NC_011415.1 hypothetical protein 2273290 7000595 ECSE_2217 Escherichia coli SE11 hypothetical protein YP_002293492.1 2272754 R 409438 CDS YP_002293493.1 209919409 7000596 complement(2273287..2273967) 1 NC_011415.1 hypothetical protein 2273967 7000596 ECSE_2218 Escherichia coli SE11 hypothetical protein YP_002293493.1 2273287 R 409438 CDS YP_002293494.1 209919410 7000597 complement(2273999..2274379) 1 NC_011415.1 hypothetical protein 2274379 7000597 ECSE_2219 Escherichia coli SE11 hypothetical protein YP_002293494.1 2273999 R 409438 CDS YP_002293495.1 209919411 7000598 complement(2274376..2274789) 1 NC_011415.1 hypothetical protein 2274789 7000598 ECSE_2220 Escherichia coli SE11 hypothetical protein YP_002293495.1 2274376 R 409438 CDS YP_002293496.1 209919412 7000599 complement(2274824..2275858) 1 NC_011415.1 putative phage major capsid protein 2275858 7000599 ECSE_2221 Escherichia coli SE11 putative phage major capsid protein YP_002293496.1 2274824 R 409438 CDS YP_002293497.1 209919413 7000600 complement(2275920..2276249) 1 NC_011415.1 hypothetical protein 2276249 7000600 ECSE_2222 Escherichia coli SE11 hypothetical protein YP_002293497.1 2275920 R 409438 CDS YP_002293498.1 209919414 7000601 complement(2276249..2277559) 1 NC_011415.1 putative phage minor capsid protein 2277559 7000601 ECSE_2223 Escherichia coli SE11 putative phage minor capsid protein YP_002293498.1 2276249 R 409438 CDS YP_002293499.1 209919415 7000602 complement(2277559..2279130) 1 NC_011415.1 putative phage capsid structural protein 2279130 7000602 ECSE_2224 Escherichia coli SE11 putative phage capsid structural protein YP_002293499.1 2277559 R 409438 CDS YP_002293500.1 209919416 7000603 complement(2279127..2279360) 1 NC_011415.1 hypothetical protein 2279360 7000603 ECSE_2225 Escherichia coli SE11 hypothetical protein YP_002293500.1 2279127 R 409438 CDS YP_002293501.1 209919417 7000604 complement(2279357..2281321) 1 NC_011415.1 putative phage DNA packaging protein large subunit 2281321 7000604 ECSE_2226 Escherichia coli SE11 putative phage DNA packaging protein large subunit YP_002293501.1 2279357 R 409438 CDS YP_002293502.1 209919418 7000605 complement(2281209..2281775) 1 NC_011415.1 putative phage DNA packaging protein 2281775 7000605 ECSE_2227 Escherichia coli SE11 putative phage DNA packaging protein YP_002293502.1 2281209 R 409438 CDS YP_002293503.1 209919419 7000606 2282679..2283149 1 NC_011415.1 hypothetical protein 2283149 7000606 ECSE_2228 Escherichia coli SE11 hypothetical protein YP_002293503.1 2282679 D 409438 CDS YP_002293504.1 209919420 7000607 complement(2283573..2283764) 1 NC_011415.1 hypothetical protein 2283764 7000607 ECSE_2229 Escherichia coli SE11 hypothetical protein YP_002293504.1 2283573 R 409438 CDS YP_002293505.1 209919421 7000608 complement(2283772..2284251) 1 NC_011415.1 hypothetical protein 2284251 7000608 ECSE_2230 Escherichia coli SE11 hypothetical protein YP_002293505.1 2283772 R 409438 CDS YP_002293506.1 209919422 7000609 complement(2284251..2284475) 1 NC_011415.1 hypothetical protein 2284475 7000609 ECSE_2231 Escherichia coli SE11 hypothetical protein YP_002293506.1 2284251 R 409438 CDS YP_002293507.1 209919423 7000610 complement(2284523..2285032) 1 NC_011415.1 hypothetical protein 2285032 7000610 ECSE_2232 Escherichia coli SE11 hypothetical protein YP_002293507.1 2284523 R 409438 CDS YP_002293508.1 209919424 7000611 complement(2285019..2285690) 1 NC_011415.1 hypothetical protein 2285690 7000611 ECSE_2233 Escherichia coli SE11 hypothetical protein YP_002293508.1 2285019 R 409438 CDS YP_002293509.1 209919425 7000612 complement(2285690..2285983) 1 NC_011415.1 hypothetical protein 2285983 7000612 ECSE_2234 Escherichia coli SE11 hypothetical protein YP_002293509.1 2285690 R 409438 CDS YP_002293510.1 209919426 7000613 complement(2285980..2286576) 1 NC_011415.1 hypothetical protein 2286576 7000613 ECSE_2235 Escherichia coli SE11 hypothetical protein YP_002293510.1 2285980 R 409438 CDS YP_002293511.1 209919427 7000614 complement(2286654..2286833) 1 NC_011415.1 hypothetical protein 2286833 7000614 ECSE_2236 Escherichia coli SE11 hypothetical protein YP_002293511.1 2286654 R 409438 CDS YP_002293512.1 209919428 7000615 complement(2286985..2287626) 1 NC_011415.1 hypothetical protein 2287626 7000615 ECSE_2237 Escherichia coli SE11 hypothetical protein YP_002293512.1 2286985 R 409438 CDS YP_002293513.1 209919429 7000616 2288136..2288915 1 NC_011415.1 hypothetical protein 2288915 7000616 ECSE_2238 Escherichia coli SE11 hypothetical protein YP_002293513.1 2288136 D 409438 CDS YP_002293514.1 209919430 7000617 2289394..2290056 1 NC_011415.1 hypothetical protein 2290056 7000617 ECSE_2239 Escherichia coli SE11 hypothetical protein YP_002293514.1 2289394 D 409438 CDS YP_002293515.1 209919431 7000618 complement(2290379..2291758) 1 NC_011415.1 hypothetical protein 2291758 7000618 ECSE_2240 Escherichia coli SE11 hypothetical protein YP_002293515.1 2290379 R 409438 CDS YP_002293516.1 209919432 7000619 2292084..2292890 1 NC_011415.1 hypothetical protein 2292890 7000619 ECSE_2241 Escherichia coli SE11 hypothetical protein YP_002293516.1 2292084 D 409438 CDS YP_002293517.1 209919433 7000620 2292971..2294206 1 NC_011415.1 hypothetical protein 2294206 7000620 ECSE_2242 Escherichia coli SE11 hypothetical protein YP_002293517.1 2292971 D 409438 CDS YP_002293518.1 209919434 7000621 2294338..2294898 1 NC_011415.1 hypothetical protein 2294898 7000621 ECSE_2243 Escherichia coli SE11 hypothetical protein YP_002293518.1 2294338 D 409438 CDS YP_002293519.1 209919435 7000622 2295351..2296274 1 NC_011415.1 hypothetical protein 2296274 7000622 ECSE_2244 Escherichia coli SE11 hypothetical protein YP_002293519.1 2295351 D 409438 CDS YP_002293520.1 209919436 7000623 complement(2296452..2297246) 1 NC_011415.1 hypothetical protein 2297246 7000623 ECSE_2245 Escherichia coli SE11 hypothetical protein YP_002293520.1 2296452 R 409438 CDS YP_002293521.1 209919437 7000624 complement(2297519..2297740) 1 NC_011415.1 hypothetical protein 2297740 7000624 ECSE_2246 Escherichia coli SE11 hypothetical protein YP_002293521.1 2297519 R 409438 CDS YP_002293522.1 209919438 7000625 complement(2297928..2298152) 1 NC_011415.1 hypothetical protein 2298152 7000625 ECSE_2247 Escherichia coli SE11 hypothetical protein YP_002293522.1 2297928 R 409438 CDS YP_002293523.1 209919439 7000626 complement(2298149..2298382) 1 NC_011415.1 hypothetical protein 2298382 7000626 ECSE_2248 Escherichia coli SE11 hypothetical protein YP_002293523.1 2298149 R 409438 CDS YP_002293524.1 209919440 7000627 complement(2298382..2298783) 1 NC_011415.1 hypothetical protein 2298783 7000627 ECSE_2249 Escherichia coli SE11 hypothetical protein YP_002293524.1 2298382 R 409438 CDS YP_002293525.1 209919441 7000628 complement(2298822..2300213) 1 NC_011415.1 hypothetical protein 2300213 7000628 ECSE_2250 Escherichia coli SE11 hypothetical protein YP_002293525.1 2298822 R 409438 CDS YP_002293526.1 209919442 7000629 complement(2300210..2301274) 1 NC_011415.1 hypothetical protein 2301274 7000629 ECSE_2251 Escherichia coli SE11 hypothetical protein YP_002293526.1 2300210 R 409438 CDS YP_002293527.1 209919443 7000630 complement(2301277..2301501) 1 NC_011415.1 hypothetical protein 2301501 7000630 ECSE_2252 Escherichia coli SE11 hypothetical protein YP_002293527.1 2301277 R 409438 CDS YP_002293528.1 209919444 7000631 complement(2301541..2302017) 1 NC_011415.1 hypothetical protein 2302017 7000631 ECSE_2253 Escherichia coli SE11 hypothetical protein YP_002293528.1 2301541 R 409438 CDS YP_002293529.1 209919445 7000632 2302428..2302757 1 NC_011415.1 The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC, but its specific role in cellular replication and mode of action are still unknown.; transcriptional repressor DicA 2302757 7000632 ECSE_2254 Escherichia coli SE11 transcriptional repressor DicA YP_002293529.1 2302428 D 409438 CDS YP_002293530.1 209919446 7000633 complement(2303738..2304013) 1 NC_011415.1 hypothetical protein 2304013 7000633 ECSE_2255 Escherichia coli SE11 hypothetical protein YP_002293530.1 2303738 R 409438 CDS YP_002293531.1 209919447 7000634 2304192..2304512 1 NC_011415.1 hypothetical protein 2304512 7000634 ECSE_2256 Escherichia coli SE11 hypothetical protein YP_002293531.1 2304192 D 409438 CDS YP_002293532.1 209919448 7000635 2304543..2306759 1 NC_011415.1 hypothetical protein 2306759 7000635 ECSE_2257 Escherichia coli SE11 hypothetical protein YP_002293532.1 2304543 D 409438 CDS YP_002293533.1 209919449 7000636 2306756..2307325 1 NC_011415.1 hypothetical protein 2307325 7000636 ECSE_2258 Escherichia coli SE11 hypothetical protein YP_002293533.1 2306756 D 409438 CDS YP_002293534.1 209919450 7000637 2307325..2307507 1 NC_011415.1 hypothetical protein 2307507 7000637 ECSE_2259 Escherichia coli SE11 hypothetical protein YP_002293534.1 2307325 D 409438 CDS YP_002293535.1 209919451 7000638 2307717..2307932 1 NC_011415.1 hypothetical protein 2307932 7000638 ECSE_2260 Escherichia coli SE11 hypothetical protein YP_002293535.1 2307717 D 409438 CDS YP_002293536.1 209919452 7000639 2307932..2308960 1 NC_011415.1 putative phage integrase 2308960 7000639 ECSE_2261 Escherichia coli SE11 putative phage integrase YP_002293536.1 2307932 D 409438 CDS YP_002293537.1 209919453 7003141 2309229..2310026 1 NC_011415.1 hypothetical protein 2310026 7003141 ECSE_2262 Escherichia coli SE11 hypothetical protein YP_002293537.1 2309229 D 409438 CDS YP_002293538.1 209919454 7003087 2310489..2312105 1 NC_011415.1 hypothetical protein 2312105 7003087 ECSE_2263 Escherichia coli SE11 hypothetical protein YP_002293538.1 2310489 D 409438 CDS YP_002293539.1 209919455 7000642 2312057..2313841 1 NC_011415.1 hypothetical protein 2313841 7000642 ECSE_2264 Escherichia coli SE11 hypothetical protein YP_002293539.1 2312057 D 409438 CDS YP_002293540.1 209919456 7000643 2313810..2318498 1 NC_011415.1 putative adhesin 2318498 7000643 ECSE_2265 Escherichia coli SE11 putative adhesin YP_002293540.1 2313810 D 409438 CDS YP_002293541.1 209919457 7000644 complement(2318760..2319812) 1 NC_011415.1 hypothetical protein 2319812 7000644 ECSE_2266 Escherichia coli SE11 hypothetical protein YP_002293541.1 2318760 R 409438 CDS YP_002293542.1 209919458 7000645 2320127..2321443 1 NC_011415.1 shikimate transporter 2321443 7000645 ECSE_2267 Escherichia coli SE11 shikimate transporter YP_002293542.1 2320127 D 409438 CDS YP_002293543.1 209919459 7000646 2321545..2322999 1 NC_011415.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 2322999 7000646 ECSE_2268 Escherichia coli SE11 AMP nucleosidase YP_002293543.1 2321545 D 409438 CDS YP_002293544.1 209919460 7000647 2323342..2324058 1 NC_011415.1 hypothetical protein 2324058 7000647 ECSE_2269 Escherichia coli SE11 hypothetical protein YP_002293544.1 2323342 D 409438 CDS YP_002293545.1 209919461 7003140 complement(2324685..2325542) 1 NC_011415.1 hypothetical protein 2325542 7003140 ECSE_2270 Escherichia coli SE11 hypothetical protein YP_002293545.1 2324685 R 409438 CDS YP_002293546.1 209919462 7000649 complement(2325539..2326318) 1 NC_011415.1 hypothetical protein 2326318 7000649 ECSE_2271 Escherichia coli SE11 hypothetical protein YP_002293546.1 2325539 R 409438 CDS YP_002293547.1 209919463 7003088 complement(2326439..2327389) 1 NC_011415.1 LysR-type transcriptional regulator similar to CysB; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon; regulated by CysB; transcriptional regulator Cbl 2327389 cbl 7003088 cbl Escherichia coli SE11 transcriptional regulator Cbl YP_002293547.1 2326439 R 409438 CDS YP_002293548.1 209919464 7000651 complement(2327491..2328408) 1 NC_011415.1 Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation; nitrogen assimilation transcriptional regulator 2328408 7000651 ECSE_2273 Escherichia coli SE11 nitrogen assimilation transcriptional regulator YP_002293548.1 2327491 R 409438 CDS YP_002293549.1 209919465 7003089 complement(2328865..2329797) 1 NC_011415.1 hypothetical protein 2329797 7003089 ECSE_2274 Escherichia coli SE11 hypothetical protein YP_002293549.1 2328865 R 409438 CDS YP_002293550.1 209919466 7000653 complement(2329862..2330941) 1 NC_011415.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2330941 cobT 7000653 cobT Escherichia coli SE11 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002293550.1 2329862 R 409438 CDS YP_002293551.1 209919467 7000654 complement(2330953..2331696) 1 NC_011415.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 2331696 cobS 7000654 cobS Escherichia coli SE11 cobalamin synthase YP_002293551.1 2330953 R 409438 CDS YP_002293552.1 209919468 7000655 complement(2331693..2332238) 1 NC_011415.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 2332238 cobU 7000655 cobU Escherichia coli SE11 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_002293552.1 2331693 R 409438 CDS YP_002293553.1 209919469 7000656 complement(2332372..2332731) 1 NC_011415.1 hypothetical protein 2332731 7000656 ECSE_2278 Escherichia coli SE11 hypothetical protein YP_002293553.1 2332372 R 409438 CDS YP_002293554.1 209919470 7000657 2332734..2333006 1 NC_011415.1 putative propanediol utilization protein 2333006 7000657 ECSE_2279 Escherichia coli SE11 putative propanediol utilization protein YP_002293554.1 2332734 D 409438 CDS YP_002293555.1 209919471 7000658 complement(2333107..2333436) 1 NC_011415.1 hypothetical protein 2333436 7000658 ECSE_2280 Escherichia coli SE11 hypothetical protein YP_002293555.1 2333107 R 409438 CDS YP_002293556.1 209919472 7000659 complement(2333608..2334666) 1 NC_011415.1 hypothetical protein 2334666 7000659 ECSE_2281 Escherichia coli SE11 hypothetical protein YP_002293556.1 2333608 R 409438 CDS YP_002293557.1 209919473 7000660 complement(2334864..2335337) 1 NC_011415.1 DNA gyrase inhibitor 2335337 7000660 ECSE_2282 Escherichia coli SE11 DNA gyrase inhibitor YP_002293557.1 2334864 R 409438 CDS YP_002293558.1 209919474 7000661 complement(2335456..2336628) 1 NC_011415.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase 2336628 dacD 7000661 dacD Escherichia coli SE11 D-alanyl-D-alanine carboxypeptidase YP_002293558.1 2335456 R 409438 CDS YP_002293559.1 209919475 7000662 2336831..2338258 1 NC_011415.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 2338258 sbcB 7000662 sbcB Escherichia coli SE11 exonuclease I YP_002293559.1 2336831 D 409438 CDS YP_002293560.1 209919476 7000663 complement(2338301..2338528) 1 NC_011415.1 hypothetical protein 2338528 7000663 ECSE_2285 Escherichia coli SE11 hypothetical protein YP_002293560.1 2338301 R 409438 CDS YP_002293561.1 209919477 7000664 complement(2338542..2339600) 1 NC_011415.1 putative transport protein 2339600 7000664 ECSE_2286 Escherichia coli SE11 putative transport protein YP_002293561.1 2338542 R 409438 CDS YP_002293562.1 209919478 7000665 complement(2339779..2341143) 1 NC_011415.1 putative amino acid transport protein 2341143 7000665 ECSE_2287 Escherichia coli SE11 putative amino acid transport protein YP_002293562.1 2339779 R 409438 CDS YP_002293563.1 209919479 7000666 complement(2341404..2342333) 1 NC_011415.1 putative transcriptional regulator 2342333 7000666 ECSE_2288 Escherichia coli SE11 putative transcriptional regulator YP_002293563.1 2341404 R 409438 CDS YP_002293564.1 209919480 7000667 complement(2342379..2343203) 1 NC_011415.1 hypothetical protein 2343203 7000667 ECSE_2289 Escherichia coli SE11 hypothetical protein YP_002293564.1 2342379 R 409438 CDS YP_002293565.1 209919481 7000668 complement(2343286..2343540) 1 NC_011415.1 hypothetical protein 2343540 7000668 ECSE_2290 Escherichia coli SE11 hypothetical protein YP_002293565.1 2343286 R 409438 CDS YP_002293566.1 209919482 7000669 complement(2343537..2343788) 1 NC_011415.1 Antitoxin that counteracts the effect of the YoeB toxin; antitoxin YefM 2343788 7000669 ECSE_2291 Escherichia coli SE11 antitoxin YefM YP_002293566.1 2343537 R 409438 CDS YP_002293568.1 209919484 7000671 2344268..2345167 1 NC_011415.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2345167 hisG 7000671 hisG Escherichia coli SE11 ATP phosphoribosyltransferase YP_002293568.1 2344268 D 409438 CDS YP_002293569.1 209919485 7000672 2345173..2346477 1 NC_011415.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 2346477 hisD 7000672 hisD Escherichia coli SE11 histidinol dehydrogenase YP_002293569.1 2345173 D 409438 CDS YP_002293570.1 209919486 7000673 2346474..2347544 1 NC_011415.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2347544 7000673 ECSE_2295 Escherichia coli SE11 histidinol-phosphate aminotransferase YP_002293570.1 2346474 D 409438 CDS YP_002293571.1 209919487 7000674 2347544..2348611 1 NC_011415.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase 2348611 7000674 ECSE_2296 Escherichia coli SE11 imidazole glycerol-phosphate dehydratase/histidinol phosphatase YP_002293571.1 2347544 D 409438 CDS YP_002293572.1 209919488 7000675 2348611..2349201 1 NC_011415.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2349201 hisH 7000675 hisH Escherichia coli SE11 imidazole glycerol phosphate synthase subunit HisH YP_002293572.1 2348611 D 409438 CDS YP_002293573.1 209919489 7000676 2349201..2349938 1 NC_011415.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2349938 7000676 ECSE_2298 Escherichia coli SE11 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002293573.1 2349201 D 409438 CDS YP_002293574.1 209919490 7000677 2349920..2350696 1 NC_011415.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2350696 7000677 ECSE_2299 Escherichia coli SE11 imidazole glycerol phosphate synthase subunit HisF YP_002293574.1 2349920 D 409438 CDS YP_002293575.1 209919491 7000678 2350690..2351301 1 NC_011415.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein 2351301 7000678 ECSE_2300 Escherichia coli SE11 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_002293575.1 2350690 D 409438 CDS YP_002293576.1 209919492 7000679 complement(2351395..2352372) 1 NC_011415.1 O-antigen chain length determinant protein 2352372 7000679 ECSE_2301 Escherichia coli SE11 O-antigen chain length determinant protein YP_002293576.1 2351395 R 409438 CDS YP_002293577.1 209919493 7000680 complement(2352519..2353685) 1 NC_011415.1 UDP-glucose-6-dehydrogenase 2353685 7000680 ECSE_2302 Escherichia coli SE11 UDP-glucose-6-dehydrogenase YP_002293577.1 2352519 R 409438 CDS YP_002293578.1 209919494 7000681 complement(2353933..2355339) 1 NC_011415.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2355339 7000681 ECSE_2303 Escherichia coli SE11 6-phosphogluconate dehydrogenase YP_002293578.1 2353933 R 409438 CDS YP_002293579.1 209919495 7000682 complement(2355500..2356573) 1 NC_011415.1 putative glycosyl transferase 2356573 7000682 ECSE_2304 Escherichia coli SE11 putative glycosyl transferase YP_002293579.1 2355500 R 409438 CDS YP_002293580.1 209919496 7000683 complement(2356574..2357341) 1 NC_011415.1 putative glycosyltransferase 2357341 7000683 ECSE_2305 Escherichia coli SE11 putative glycosyltransferase YP_002293580.1 2356574 R 409438 CDS YP_002293581.1 209919497 7000684 complement(2357346..2358425) 1 NC_011415.1 hypothetical protein 2358425 7000684 ECSE_2306 Escherichia coli SE11 hypothetical protein YP_002293581.1 2357346 R 409438 CDS YP_002293582.1 209919498 7000685 complement(2358428..2359426) 1 NC_011415.1 putative glycosyltransferase 2359426 7000685 ECSE_2307 Escherichia coli SE11 putative glycosyltransferase YP_002293582.1 2358428 R 409438 CDS YP_002293583.1 209919499 7000686 complement(2359493..2360860) 1 NC_011415.1 phosphomannomutase 2360860 7000686 ECSE_2308 Escherichia coli SE11 phosphomannomutase YP_002293583.1 2359493 R 409438 CDS YP_002293584.1 209919500 7000687 complement(2360865..2362313) 1 NC_011415.1 GDP-mannose pyrophosphorylase 2362313 7000687 ECSE_2309 Escherichia coli SE11 GDP-mannose pyrophosphorylase YP_002293584.1 2360865 R 409438 CDS YP_002293585.1 209919501 7000688 complement(2362306..2362806) 1 NC_011415.1 GDP-mannose mannosyl hydrolase 2362806 7000688 ECSE_2310 Escherichia coli SE11 GDP-mannose mannosyl hydrolase YP_002293585.1 2362306 R 409438 CDS YP_002293586.1 209919502 7000689 complement(2362809..2363774) 1 NC_011415.1 GDP-mannose-4-keto-6-D epimerase 2363774 7000689 ECSE_2311 Escherichia coli SE11 GDP-mannose-4-keto-6-D epimerase YP_002293586.1 2362809 R 409438 CDS YP_002293587.1 209919503 7000690 complement(2363777..2364898) 1 NC_011415.1 GDP-mannose 4,6-dehydratase 2364898 7000690 ECSE_2312 Escherichia coli SE11 GDP-mannose 4,6-dehydratase YP_002293587.1 2363777 R 409438 CDS YP_002293588.1 209919504 7000691 complement(2364968..2365729) 1 NC_011415.1 putative glycosyltransferase 2365729 7000691 ECSE_2313 Escherichia coli SE11 putative glycosyltransferase YP_002293588.1 2364968 R 409438 CDS YP_002293589.1 209919505 7000692 complement(2365729..2366979) 1 NC_011415.1 hypothetical protein 2366979 7000692 ECSE_2314 Escherichia coli SE11 hypothetical protein YP_002293589.1 2365729 R 409438 CDS YP_002293590.1 209919506 7000693 complement(2367226..2368362) 1 NC_011415.1 H repeat-associated protein 2368362 7000693 ECSE_2315 Escherichia coli SE11 H repeat-associated protein YP_002293590.1 2367226 R 409438 CDS YP_002293591.1 209919507 7000694 complement(2369133..2370026) 1 NC_011415.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose; UTP--glucose-1-phosphate uridylyltransferase subunit GalF 2370026 7000694 ECSE_2316 Escherichia coli SE11 UTP--glucose-1-phosphate uridylyltransferase subunit GalF YP_002293591.1 2369133 R 409438 CDS YP_002293592.1 209919508 7000695 complement(2370201..2371595) 1 NC_011415.1 WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface; may be involved in the biosynthesis of colanic acid; putative colanic acid biosynthesis protein 2371595 wcaM 7000695 wcaM Escherichia coli SE11 putative colanic acid biosynthesis protein YP_002293592.1 2370201 R 409438 CDS YP_002293593.1 209919509 7000696 complement(2371606..2372826) 1 NC_011415.1 putative colanic acid biosynthesis glycosyl transferase 2372826 7000696 ECSE_2318 Escherichia coli SE11 putative colanic acid biosynthesis glycosyl transferase YP_002293593.1 2371606 R 409438 CDS YP_002293594.1 209919510 7000697 complement(2372823..2374103) 1 NC_011415.1 putative pyruvyl transferase 2374103 7000697 ECSE_2319 Escherichia coli SE11 putative pyruvyl transferase YP_002293594.1 2372823 R 409438 CDS YP_002293595.1 209919511 7000698 complement(2374283..2375761) 1 NC_011415.1 colanic acid exporter 2375761 7000698 ECSE_2320 Escherichia coli SE11 colanic acid exporter YP_002293595.1 2374283 R 409438 CDS YP_002293596.1 209919512 7000699 complement(2375763..2377157) 1 NC_011415.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid; putative UDP-glucose lipid carrier transferase 2377157 7000699 ECSE_2321 Escherichia coli SE11 putative UDP-glucose lipid carrier transferase YP_002293596.1 2375763 R 409438 CDS YP_002293597.1 209919513 7000700 complement(2377212..2378582) 1 NC_011415.1 phosphomannomutase 2378582 7000700 ECSE_2322 Escherichia coli SE11 phosphomannomutase YP_002293597.1 2377212 R 409438 CDS YP_002293598.1 209919514 7000701 complement(2378684..2380120) 1 NC_011415.1 GDP-mannose pyrophosphorylase 2380120 7000701 ECSE_2323 Escherichia coli SE11 GDP-mannose pyrophosphorylase YP_002293598.1 2378684 R 409438 CDS YP_002293599.1 209919515 7000702 complement(2380123..2381346) 1 NC_011415.1 putative glycosyl transferase 2381346 7000702 ECSE_2324 Escherichia coli SE11 putative glycosyl transferase YP_002293599.1 2380123 R 409438 CDS YP_002293600.1 209919516 7000703 complement(2381343..2381822) 1 NC_011415.1 GDP-mannose mannosyl hydrolase 2381822 7000703 ECSE_2325 Escherichia coli SE11 GDP-mannose mannosyl hydrolase YP_002293600.1 2381343 R 409438 CDS YP_002293601.1 209919517 7000704 complement(2381825..2382790) 1 NC_011415.1 GDP-4-dehydro-6-deoxy-D-mannose epimerase 2382790 7000704 ECSE_2326 Escherichia coli SE11 GDP-4-dehydro-6-deoxy-D-mannose epimerase YP_002293601.1 2381825 R 409438 CDS YP_002293602.1 209919518 7000705 complement(2382793..2383914) 1 NC_011415.1 GDP-mannose 4,6-dehydratase 2383914 7000705 ECSE_2327 Escherichia coli SE11 GDP-mannose 4,6-dehydratase YP_002293602.1 2382793 R 409438 CDS YP_002293603.1 209919519 7000706 complement(2383941..2384489) 1 NC_011415.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); putative colanic acid biosynthesis acetyltransferase WcaF 2384489 7000706 ECSE_2328 Escherichia coli SE11 putative colanic acid biosynthesis acetyltransferase WcaF YP_002293603.1 2383941 R 409438 CDS YP_002293604.1 209919520 7000707 complement(2384505..2385251) 1 NC_011415.1 putative glycosyl transferase 2385251 7000707 ECSE_2329 Escherichia coli SE11 putative glycosyl transferase YP_002293604.1 2384505 R 409438 CDS YP_002293605.1 209919521 7000708 complement(2385262..2386479) 1 NC_011415.1 essential for colanic acid biosynthesis; colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance; putative colanic acid biosynthesis protein 2386479 wcaD 7000708 wcaD Escherichia coli SE11 putative colanic acid biosynthesis protein YP_002293605.1 2385262 R 409438 CDS YP_002293606.1 209919522 7000709 complement(2386454..2387671) 1 NC_011415.1 putative glycosyl transferase 2387671 7000709 ECSE_2331 Escherichia coli SE11 putative glycosyl transferase YP_002293606.1 2386454 R 409438 CDS YP_002293607.1 209919523 7000710 complement(2387668..2388156) 1 NC_011415.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit); wcaB is induced in sessile bacteria and by osmotic shock, and repressed when grown in rich medium; putative colanic acid biosynthesis acetyltransferase WcaB 2388156 7000710 ECSE_2332 Escherichia coli SE11 putative colanic acid biosynthesis acetyltransferase WcaB YP_002293607.1 2387668 R 409438 CDS YP_002293608.1 209919524 7000711 complement(2388159..2388998) 1 NC_011415.1 putative glycosyl transferase 2388998 7000711 ECSE_2333 Escherichia coli SE11 putative glycosyl transferase YP_002293608.1 2388159 R 409438 CDS YP_002293609.1 209919525 7000712 complement(2389176..2391374) 1 NC_011415.1 Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); tyrosine kinase 2391374 7000712 ECSE_2334 Escherichia coli SE11 tyrosine kinase YP_002293609.1 2389176 R 409438 CDS YP_002293610.1 209919526 7000713 complement(2391341..2391784) 1 NC_011415.1 Wzb shows phosphatase activity towards the autophosphorylated Wzc protein, which induces colanic acid biosynthesis; catalyzes the phosphorylation of UDP-glucose dehydrogenase, an enzyme involved in colanic acid biosynthesis; tyrosine phosphatase 2391784 7000713 ECSE_2335 Escherichia coli SE11 tyrosine phosphatase YP_002293610.1 2391341 R 409438 CDS YP_002293611.1 209919527 7000714 complement(2391790..2392929) 1 NC_011415.1 putative polysaccharide export protein 2392929 7000714 ECSE_2336 Escherichia coli SE11 putative polysaccharide export protein YP_002293611.1 2391790 R 409438 CDS YP_002293612.1 209919528 7000715 2393588..2395171 1 NC_011415.1 putative transport protein 2395171 7000715 ECSE_2337 Escherichia coli SE11 putative transport protein YP_002293612.1 2393588 D 409438 CDS YP_002293613.1 209919529 7000716 complement(2395445..2397298) 1 NC_011415.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; putative assembly protein 2397298 7000716 ECSE_2338 Escherichia coli SE11 putative assembly protein YP_002293613.1 2395445 R 409438 CDS YP_002293614.1 209919530 7000717 complement(2397320..2397901) 1 NC_011415.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2397901 dcd 7000717 dcd Escherichia coli SE11 deoxycytidine triphosphate deaminase YP_002293614.1 2397320 R 409438 CDS YP_002293615.1 209919531 7000718 complement(2397993..2398634) 1 NC_011415.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2398634 7000718 ECSE_2340 Escherichia coli SE11 uridine kinase YP_002293615.1 2397993 R 409438 CDS YP_002293616.1 209919532 7000719 2398952..2402269 1 NC_011415.1 contains a MASE1 (Membrane-Associated Sensor) domain; potentially involved in signal transduction; putative sensor protein 2402269 7000719 ECSE_2341 Escherichia coli SE11 putative sensor protein YP_002293616.1 2398952 D 409438 CDS YP_002293617.1 209919533 7000720 complement(2402308..2403165) 1 NC_011415.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine; 3-methyl-adenine DNA glycosylase II 2403165 7000720 ECSE_2342 Escherichia coli SE11 3-methyl-adenine DNA glycosylase II YP_002293617.1 2402308 R 409438 CDS YP_002293618.1 209919534 7000721 2403299..2404651 1 NC_011415.1 putative chaperone 2404651 7000721 ECSE_2343 Escherichia coli SE11 putative chaperone YP_002293618.1 2403299 D 409438 CDS YP_002293619.1 209919535 7000722 complement(2404663..2406603) 1 NC_011415.1 putative chaperone 2406603 7000722 ECSE_2344 Escherichia coli SE11 putative chaperone YP_002293619.1 2404663 R 409438 CDS YP_002293620.1 209919536 7000723 complement(2406600..2407361) 1 NC_011415.1 hypothetical protein 2407361 7000723 ECSE_2345 Escherichia coli SE11 hypothetical protein YP_002293620.1 2406600 R 409438 CDS YP_002293621.1 209919537 7000724 complement(2407358..2408017) 1 NC_011415.1 hypothetical protein 2408017 7000724 ECSE_2346 Escherichia coli SE11 hypothetical protein YP_002293621.1 2407358 R 409438 CDS YP_002293622.1 209919538 7000725 2409086..2410480 1 NC_011415.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtA 2410480 7000725 ECSE_2347 Escherichia coli SE11 multidrug efflux system subunit MdtA YP_002293622.1 2409086 D 409438 CDS YP_002293623.1 209919539 7000726 2410480..2413602 1 NC_011415.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtB 2413602 7000726 ECSE_2348 Escherichia coli SE11 multidrug efflux system subunit MdtB YP_002293623.1 2410480 D 409438 CDS YP_002293624.1 209919540 7000727 2413603..2416680 1 NC_011415.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate; multidrug efflux system subunit MdtC 2416680 7000727 ECSE_2349 Escherichia coli SE11 multidrug efflux system subunit MdtC YP_002293624.1 2413603 D 409438 CDS YP_002293625.1 209919541 7000728 2416681..2418096 1 NC_011415.1 multidrug efflux system protein MdtE 2418096 7000728 ECSE_2350 Escherichia coli SE11 multidrug efflux system protein MdtE YP_002293625.1 2416681 D 409438 CDS YP_002293626.1 209919542 7000729 2418093..2419496 1 NC_011415.1 signal transduction histidine-protein kinase BaeS 2419496 7000729 ECSE_2351 Escherichia coli SE11 signal transduction histidine-protein kinase BaeS YP_002293626.1 2418093 D 409438 CDS YP_002293627.1 209919543 7000730 2419493..2420215 1 NC_011415.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport; DNA-binding transcriptional regulator BaeR 2420215 7000730 ECSE_2352 Escherichia coli SE11 DNA-binding transcriptional regulator BaeR YP_002293627.1 2419493 D 409438 CDS YP_002293628.1 209919544 7000731 2420406..2420738 1 NC_011415.1 hypothetical protein 2420738 7000731 ECSE_2353 Escherichia coli SE11 hypothetical protein YP_002293628.1 2420406 D 409438 CDS YP_002293629.1 209919545 7000732 2420992..2421243 1 NC_011415.1 hypothetical protein 2421243 7000732 ECSE_2354 Escherichia coli SE11 hypothetical protein YP_002293629.1 2420992 D 409438 CDS YP_002293630.1 209919546 7000733 2421245..2421541 1 NC_011415.1 hypothetical protein 2421541 7000733 ECSE_2355 Escherichia coli SE11 hypothetical protein YP_002293630.1 2421245 D 409438 CDS YP_002293631.1 209919547 7000734 2421644..2423005 1 NC_011415.1 putative protease 2423005 7000734 ECSE_2356 Escherichia coli SE11 putative protease YP_002293631.1 2421644 D 409438 CDS YP_002293632.1 209919548 7000735 complement(2423335..2423712) 1 NC_011415.1 hypothetical protein 2423712 7000735 ECSE_2357 Escherichia coli SE11 hypothetical protein YP_002293632.1 2423335 R 409438 CDS YP_002293633.1 209919549 7000736 2424067..2424966 1 NC_011415.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 2424966 7000736 ECSE_2358 Escherichia coli SE11 lipid kinase YP_002293633.1 2424067 D 409438 CDS YP_002293634.1 209919550 7000737 complement(2425048..2425827) 1 NC_011415.1 galactitol utilization operon repressor 2425827 7000737 ECSE_2359 Escherichia coli SE11 galactitol utilization operon repressor YP_002293634.1 2425048 R 409438 CDS YP_002293635.1 209919551 7000738 complement(2425927..2426967) 1 NC_011415.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 2426967 7000738 ECSE_2360 Escherichia coli SE11 galactitol-1-phosphate dehydrogenase YP_002293635.1 2425927 R 409438 CDS YP_002293636.1 209919552 7000739 complement(2427015..2428370) 1 NC_011415.1 PTS system galactitol-specific IIC component 2428370 7000739 ECSE_2361 Escherichia coli SE11 PTS system galactitol-specific IIC component YP_002293636.1 2427015 R 409438 CDS YP_002293637.1 209919553 7000740 complement(2428374..2428643) 1 NC_011415.1 PTS system galactitol-specific IIB component 2428643 7000740 ECSE_2362 Escherichia coli SE11 PTS system galactitol-specific IIB component YP_002293637.1 2428374 R 409438 CDS YP_002293638.1 209919554 7000741 complement(2428690..2429142) 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 2429142 7000741 ECSE_2363 Escherichia coli SE11 PTS system galactitol-specific transporter subunit IIA YP_002293638.1 2428690 R 409438 CDS YP_002293639.1 209919555 7000742 complement(2429152..2430414) 1 NC_011415.1 putative tagatose 6-phosphate kinase 2430414 7000742 ECSE_2364 Escherichia coli SE11 putative tagatose 6-phosphate kinase YP_002293639.1 2429152 R 409438 CDS YP_002293640.1 209919556 7000743 complement(2430443..2431303) 1 NC_011415.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 2431303 gatY 7000743 gatY Escherichia coli SE11 tagatose-bisphosphate aldolase YP_002293640.1 2430443 R 409438 CDS YP_002293641.1 209919557 7000744 complement(2431607..2432659) 1 NC_011415.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2432659 7000744 ECSE_2366 Escherichia coli SE11 fructose-bisphosphate aldolase YP_002293641.1 2431607 R 409438 CDS YP_002293642.1 209919558 7000745 2432916..2434193 1 NC_011415.1 putative nucleoside transport protein 2434193 7000745 ECSE_2367 Escherichia coli SE11 putative nucleoside transport protein YP_002293642.1 2432916 D 409438 CDS YP_002293643.1 209919559 7000746 2434190..2435194 1 NC_011415.1 putative glycohydrolase 2435194 7000746 ECSE_2368 Escherichia coli SE11 putative glycohydrolase YP_002293643.1 2434190 D 409438 CDS YP_002293644.1 209919560 7000747 2435191..2436156 1 NC_011415.1 putative kinase 2436156 7000747 ECSE_2369 Escherichia coli SE11 putative kinase YP_002293644.1 2435191 D 409438 CDS YP_002293645.1 209919561 7000748 complement(2436130..2436876) 1 NC_011415.1 putative transcriptional regulator 2436876 7000748 ECSE_2370 Escherichia coli SE11 putative transcriptional regulator YP_002293645.1 2436130 R 409438 CDS YP_002293646.1 209919562 7000749 complement(2436928..2437755) 1 NC_011415.1 hypothetical protein 2437755 7000749 ECSE_2371 Escherichia coli SE11 hypothetical protein YP_002293646.1 2436928 R 409438 CDS YP_002293647.1 209919563 7000750 complement(2437811..2438611) 1 NC_011415.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 2438611 7000750 ECSE_2372 Escherichia coli SE11 phosphomethylpyrimidine kinase YP_002293647.1 2437811 R 409438 CDS YP_002293648.1 209919564 7000751 complement(2438608..2439396) 1 NC_011415.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2439396 7000751 ECSE_2373 Escherichia coli SE11 hydroxyethylthiazole kinase YP_002293648.1 2438608 R 409438 CDS YP_002293649.1 209919565 7000752 complement(2439619..2439891) 1 NC_011415.1 hypothetical protein 2439891 7000752 ECSE_2374 Escherichia coli SE11 hypothetical protein YP_002293649.1 2439619 R 409438 CDS YP_002293650.1 209919566 7000753 2440012..2440836 1 NC_011415.1 membrane protein conferring nickel and cobalt resistance; nickel/cobalt efflux protein RcnA 2440836 7000753 ECSE_2375 Escherichia coli SE11 nickel/cobalt efflux protein RcnA YP_002293650.1 2440012 D 409438 CDS YP_002293651.1 209919567 7000754 2441055..2441393 1 NC_011415.1 hypothetical protein 2441393 7000754 ECSE_2376 Escherichia coli SE11 hypothetical protein YP_002293651.1 2441055 D 409438 CDS YP_002293652.1 209919568 7000755 complement(2441475..2442509) 1 NC_011415.1 putative fimbrial protein 2442509 7000755 ECSE_2377 Escherichia coli SE11 putative fimbrial protein YP_002293652.1 2441475 R 409438 CDS YP_002293653.1 209919569 7000756 complement(2442525..2445005) 1 NC_011415.1 putative fimbrial usher protein 2445005 7000756 ECSE_2378 Escherichia coli SE11 putative fimbrial usher protein YP_002293653.1 2442525 R 409438 CDS YP_002293654.1 209919570 7000757 complement(2445021..2445695) 1 NC_011415.1 putative fimbrial chaperone 2445695 7000757 ECSE_2379 Escherichia coli SE11 putative fimbrial chaperone YP_002293654.1 2445021 R 409438 CDS YP_002293655.1 209919571 7000758 complement(2445776..2446318) 1 NC_011415.1 putative fimbrial protein 2446318 7000758 ECSE_2380 Escherichia coli SE11 putative fimbrial protein YP_002293655.1 2445776 R 409438 CDS YP_002293656.1 209919572 7000759 complement(2446610..2446891) 1 NC_011415.1 hypothetical protein 2446891 7000759 ECSE_2381 Escherichia coli SE11 hypothetical protein YP_002293656.1 2446610 R 409438 CDS YP_002293657.1 209919573 7000760 complement(2447154..2448263) 1 NC_011415.1 putative ATPase 2448263 7000760 ECSE_2382 Escherichia coli SE11 putative ATPase YP_002293657.1 2447154 R 409438 CDS YP_002293658.1 209919574 7000761 2448395..2450428 1 NC_011415.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 2450428 metG 7000761 metG Escherichia coli SE11 methionyl-tRNA synthetase YP_002293658.1 2448395 D 409438 CDS YP_002293659.1 209919575 7000762 2450569..2454363 1 NC_011415.1 hypothetical protein 2454363 7000762 ECSE_2384 Escherichia coli SE11 hypothetical protein YP_002293659.1 2450569 D 409438 CDS YP_002293660.1 209919576 7000763 2454373..2458005 1 NC_011415.1 putative regulator 2458005 7000763 ECSE_2385 Escherichia coli SE11 putative regulator YP_002293660.1 2454373 D 409438 CDS YP_002293661.1 209919577 7000764 2458066..2458386 1 NC_011415.1 hypothetical protein 2458386 7000764 ECSE_2386 Escherichia coli SE11 hypothetical protein YP_002293661.1 2458066 D 409438 CDS YP_002293662.1 209919578 7000765 2459569..2460657 1 NC_011415.1 hypothetical protein 2460657 7000765 ECSE_2387 Escherichia coli SE11 hypothetical protein YP_002293662.1 2459569 D 409438 CDS YP_002293663.1 209919579 7000766 2460668..2462947 1 NC_011415.1 hypothetical protein 2462947 7000766 ECSE_2388 Escherichia coli SE11 hypothetical protein YP_002293663.1 2460668 D 409438 CDS YP_002293664.1 209919580 7000767 2462940..2464076 1 NC_011415.1 hypothetical protein 2464076 7000767 ECSE_2389 Escherichia coli SE11 hypothetical protein YP_002293664.1 2462940 D 409438 CDS YP_002293665.1 209919581 7000768 2464073..2466073 1 NC_011415.1 hypothetical protein 2466073 7000768 ECSE_2390 Escherichia coli SE11 hypothetical protein YP_002293665.1 2464073 D 409438 CDS YP_002293666.1 209919582 7000769 2466198..2466659 1 NC_011415.1 putative lipoprotein 2466659 7000769 ECSE_2391 Escherichia coli SE11 putative lipoprotein YP_002293666.1 2466198 D 409438 CDS YP_002293667.1 209919583 7000770 complement(2466700..2467170) 1 NC_011415.1 hypothetical protein 2467170 7000770 ECSE_2392 Escherichia coli SE11 hypothetical protein YP_002293667.1 2466700 R 409438 CDS YP_002293668.1 209919584 7000771 complement(2467217..2467936) 1 NC_011415.1 unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT 2467936 7000771 ECSE_2393 Escherichia coli SE11 putative two-component response-regulatory protein YehT YP_002293668.1 2467217 R 409438 CDS YP_002293669.1 209919585 7000772 complement(2467933..2469618) 1 NC_011415.1 two-component sensor kinase 2469618 7000772 ECSE_2394 Escherichia coli SE11 two-component sensor kinase YP_002293669.1 2467933 R 409438 CDS YP_002293670.1 209919586 7000773 2469840..2470571 1 NC_011415.1 putative transcriptional regulator 2470571 7000773 ECSE_2395 Escherichia coli SE11 putative transcriptional regulator YP_002293670.1 2469840 D 409438 CDS YP_002293671.1 209919587 7000774 complement(2470719..2471450) 1 NC_011415.1 putative glycine/betaine/choline ABC transporter permease 2471450 7000774 ECSE_2396 Escherichia coli SE11 putative glycine/betaine/choline ABC transporter permease YP_002293671.1 2470719 R 409438 CDS YP_002293672.1 209919588 7000775 complement(2471455..2472381) 1 NC_011415.1 putative glycine/betaine/choline ABC transporter ATP-binding protein 2472381 7000775 ECSE_2397 Escherichia coli SE11 putative glycine/betaine/choline ABC transporter ATP-binding protein YP_002293672.1 2471455 R 409438 CDS YP_002293673.1 209919589 7000776 complement(2472374..2473531) 1 NC_011415.1 putative glycine/betaine/choline ABC transporter permease 2473531 7000776 ECSE_2398 Escherichia coli SE11 putative glycine/betaine/choline ABC transporter permease YP_002293673.1 2472374 R 409438 CDS YP_002293674.1 209919590 7000777 complement(2473538..2474455) 1 NC_011415.1 putative glycine/betaine/choline ABC transporter substrate binding component 2474455 7000777 ECSE_2399 Escherichia coli SE11 putative glycine/betaine/choline ABC transporter substrate binding component YP_002293674.1 2473538 R 409438 CDS YP_002293675.1 209919591 7000778 complement(2474666..2476963) 1 NC_011415.1 beta-D-glucoside glucohydrolase 2476963 7000778 ECSE_2400 Escherichia coli SE11 beta-D-glucoside glucohydrolase YP_002293675.1 2474666 R 409438 CDS YP_002293676.1 209919592 7000786 2477159..2478874 1 NC_011415.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 2478874 7000786 ECSE_2401 Escherichia coli SE11 D-lactate dehydrogenase YP_002293676.1 2477159 D 409438 CDS YP_002293677.1 209919593 7000787 complement(2478912..2479844) 1 NC_011415.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 2479844 pbpG 7000787 pbpG Escherichia coli SE11 D-alanyl-D-alanine endopeptidase YP_002293677.1 2478912 R 409438 CDS YP_002293678.1 209919594 7000788 complement(2480018..2480605) 1 NC_011415.1 putative transport protein 2480605 7000788 ECSE_2403 Escherichia coli SE11 putative transport protein YP_002293678.1 2480018 R 409438 CDS YP_002293679.1 209919595 7000789 2480775..2481353 1 NC_011415.1 hypothetical protein 2481353 7000789 ECSE_2404 Escherichia coli SE11 hypothetical protein YP_002293679.1 2480775 D 409438 CDS YP_002293680.1 209919596 7000790 complement(2481483..2482244) 1 NC_011415.1 acetoin dehydrogenase 2482244 7000790 ECSE_2405 Escherichia coli SE11 acetoin dehydrogenase YP_002293680.1 2481483 R 409438 CDS YP_002293681.1 209919597 7000791 complement(2482297..2483733) 1 NC_011415.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance outer membrane protein MdtQ 2483733 7000791 ECSE_2406 Escherichia coli SE11 multidrug resistance outer membrane protein MdtQ YP_002293681.1 2482297 R 409438 CDS YP_002293682.1 209919598 7000792 complement(2484413..2485360) 1 NC_011415.1 tRNA-dihydrouridine synthase C 2485360 7000792 ECSE_2407 Escherichia coli SE11 tRNA-dihydrouridine synthase C YP_002293682.1 2484413 R 409438 CDS YP_002293683.1 209919599 7000793 2485599..2485997 1 NC_011415.1 hypothetical protein 2485997 7000793 ECSE_2408 Escherichia coli SE11 hypothetical protein YP_002293683.1 2485599 D 409438 CDS YP_002293684.1 209919600 7000794 2485994..2486689 1 NC_011415.1 hypothetical protein 2486689 7000794 ECSE_2409 Escherichia coli SE11 hypothetical protein YP_002293684.1 2485994 D 409438 CDS YP_002293685.1 209919601 7000795 2486819..2487703 1 NC_011415.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 2487703 7000795 ECSE_2410 Escherichia coli SE11 cytidine deaminase YP_002293685.1 2486819 D 409438 CDS YP_002293686.1 209919602 7000796 2487853..2488572 1 NC_011415.1 hypothetical protein 2488572 7000796 ECSE_2411 Escherichia coli SE11 hypothetical protein YP_002293686.1 2487853 D 409438 CDS YP_002293687.1 209919603 7000797 2488575..2488814 1 NC_011415.1 hypothetical protein 2488814 7000797 ECSE_2412 Escherichia coli SE11 hypothetical protein YP_002293687.1 2488575 D 409438 CDS YP_002293688.1 209919604 7000798 2489133..2490371 1 NC_011415.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2490371 7000798 ECSE_2413 Escherichia coli SE11 putative oxidoreductase YP_002293688.1 2489133 D 409438 CDS YP_002293689.1 209919605 7000799 2490365..2491600 1 NC_011415.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2491600 7000799 ECSE_2414 Escherichia coli SE11 dihydropyrimidine dehydrogenase YP_002293689.1 2490365 D 409438 CDS YP_002293690.1 209919606 7000800 complement(2491671..2492681) 1 NC_011415.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 2492681 mglC 7000800 mglC Escherichia coli SE11 beta-methylgalactoside transporter inner membrane component YP_002293690.1 2491671 R 409438 CDS YP_002293691.1 209919607 7000801 complement(2492697..2494217) 1 NC_011415.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 2494217 7000801 ECSE_2416 Escherichia coli SE11 galactose/methyl galaxtoside transporter ATP-binding protein YP_002293691.1 2492697 R 409438 CDS YP_002293692.1 209919608 7000802 complement(2494278..2495276) 1 NC_011415.1 methyl-galactoside ABC transporter substrate binding component 2495276 7000802 ECSE_2417 Escherichia coli SE11 methyl-galactoside ABC transporter substrate binding component YP_002293692.1 2494278 R 409438 CDS YP_002293693.1 209919609 7000803 complement(2495556..2496596) 1 NC_011415.1 negative regulator of the mglBAC operon for galactose utilization; DNA-binding transcriptional regulator GalS 2496596 7000803 ECSE_2418 Escherichia coli SE11 DNA-binding transcriptional regulator GalS YP_002293693.1 2495556 R 409438 CDS YP_002293694.1 209919610 7000804 complement(2496738..2497895) 1 NC_011415.1 hypothetical protein 2497895 7000804 ECSE_2419 Escherichia coli SE11 hypothetical protein YP_002293694.1 2496738 R 409438 CDS YP_002293695.1 209919611 7000805 complement(2497912..2498580) 1 NC_011415.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2498580 folE 7000805 folE Escherichia coli SE11 GTP cyclohydrolase I YP_002293695.1 2497912 R 409438 CDS YP_002293696.1 209919612 7000806 2498838..2499674 1 NC_011415.1 putative esterase 2499674 7000806 ECSE_2421 Escherichia coli SE11 putative esterase YP_002293696.1 2498838 D 409438 CDS YP_002293697.1 209919613 7000807 complement(2499706..2501697) 1 NC_011415.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein; colicin I receptor 2501697 7000807 ECSE_2422 Escherichia coli SE11 colicin I receptor YP_002293697.1 2499706 R 409438 CDS YP_002293698.1 209919614 7000808 complement(2501690..2501893) 1 NC_011415.1 hypothetical protein 2501893 7000808 ECSE_2423 Escherichia coli SE11 hypothetical protein YP_002293698.1 2501690 R 409438 CDS YP_002293699.1 209919615 7000809 complement(2501990..2503459) 1 NC_011415.1 lysine transporter 2503459 7000809 ECSE_2424 Escherichia coli SE11 lysine transporter YP_002293699.1 2501990 R 409438 CDS YP_002293700.1 209919616 7000810 complement(2503664..2504545) 1 NC_011415.1 putative DNA-binding transcriptional regulator 2504545 7000810 ECSE_2425 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002293700.1 2503664 R 409438 CDS YP_002293701.1 209919617 7000811 2504644..2505693 1 NC_011415.1 hypothetical protein 2505693 7000811 ECSE_2426 Escherichia coli SE11 hypothetical protein YP_002293701.1 2504644 D 409438 CDS YP_002293702.1 209919618 7000812 2505767..2506624 1 NC_011415.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2506624 7000812 ECSE_2427 Escherichia coli SE11 endonuclease IV YP_002293702.1 2505767 D 409438 CDS YP_002293703.1 209919619 7000813 2506628..2507716 1 NC_011415.1 hypothetical protein 2507716 7000813 ECSE_2428 Escherichia coli SE11 hypothetical protein YP_002293703.1 2506628 D 409438 CDS YP_002293704.1 209919620 7000814 complement(2507772..2509022) 1 NC_011415.1 putative transport protein 2509022 7000814 ECSE_2429 Escherichia coli SE11 putative transport protein YP_002293704.1 2507772 R 409438 CDS YP_002293705.1 209919621 7000815 complement(2509122..2510063) 1 NC_011415.1 Hydrolyzes cytidine or uridine to ribose and cytosine or uracil, respectively; ribonucleoside hydrolase 2 2510063 rihB 7000815 rihB Escherichia coli SE11 ribonucleoside hydrolase 2 YP_002293705.1 2509122 R 409438 CDS YP_002293706.1 209919622 7000816 2510232..2510891 1 NC_011415.1 activator of nucleoside metabolism; DNA-binding transcriptional activator YeiL 2510891 7000816 ECSE_2431 Escherichia coli SE11 DNA-binding transcriptional activator YeiL YP_002293706.1 2510232 D 409438 CDS YP_002293707.1 209919623 7000817 complement(2510959..2512209) 1 NC_011415.1 putative transport protein 2512209 7000817 ECSE_2432 Escherichia coli SE11 putative transport protein YP_002293707.1 2510959 R 409438 CDS YP_002293708.1 209919624 7000818 complement(2512303..2513241) 1 NC_011415.1 hypothetical protein 2513241 7000818 ECSE_2433 Escherichia coli SE11 hypothetical protein YP_002293708.1 2512303 R 409438 CDS YP_002293709.1 209919625 7000819 complement(2513229..2514170) 1 NC_011415.1 hypothetical protein 2514170 7000819 ECSE_2434 Escherichia coli SE11 hypothetical protein YP_002293709.1 2513229 R 409438 CDS YP_002293710.1 209919626 7000820 complement(2514594..2516285) 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC 2516285 7000820 ECSE_2435 Escherichia coli SE11 PTS system fructose-specific transporter subunits IIBC YP_002293710.1 2514594 R 409438 CDS YP_002293711.1 209919627 7000821 complement(2516302..2517240) 1 NC_011415.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 2517240 fruK 7000821 fruK Escherichia coli SE11 1-phosphofructokinase YP_002293711.1 2516302 R 409438 CDS YP_002293712.1 209919628 7000822 complement(2517240..2518370) 1 NC_011415.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 2518370 7000822 ECSE_2437 Escherichia coli SE11 bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_002293712.1 2517240 R 409438 CDS YP_002293713.1 209919629 7000823 2518536..2518667 1 NC_011415.1 hypothetical protein 2518667 7000823 ECSE_2438 Escherichia coli SE11 hypothetical protein YP_002293713.1 2518536 D 409438 CDS YP_002293714.1 209919630 7000824 2518738..2519919 1 NC_011415.1 putative transport protein 2519919 7000824 ECSE_2439 Escherichia coli SE11 putative transport protein YP_002293714.1 2518738 D 409438 CDS YP_002293715.1 209919631 7000825 2520082..2520897 1 NC_011415.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein; elongation factor P 2520897 7000825 ECSE_2440 Escherichia coli SE11 elongation factor P YP_002293715.1 2520082 D 409438 CDS YP_002293716.1 209919632 7000826 2521120..2522586 1 NC_011415.1 putative oxidoreductase 2522586 7000826 ECSE_2441 Escherichia coli SE11 putative oxidoreductase YP_002293716.1 2521120 D 409438 CDS YP_002293717.1 209919633 7000827 2522704..2523690 1 NC_011415.1 hypothetical protein 2523690 7000827 ECSE_2442 Escherichia coli SE11 hypothetical protein YP_002293717.1 2522704 D 409438 CDS YP_002293718.1 209919634 7000828 2523729..2524442 1 NC_011415.1 hypothetical protein 2524442 7000828 ECSE_2443 Escherichia coli SE11 hypothetical protein YP_002293718.1 2523729 D 409438 CDS YP_002293719.1 209919635 7000829 2524854..2525420 1 NC_011415.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance; putative outer membrane lipoprotein 2525420 spr 7000829 spr Escherichia coli SE11 putative outer membrane lipoprotein YP_002293719.1 2524854 D 409438 CDS YP_002293720.1 209919636 7000830 2525601..2527157 1 NC_011415.1 hypothetical protein 2527157 7000830 ECSE_2445 Escherichia coli SE11 hypothetical protein YP_002293720.1 2525601 D 409438 CDS YP_002293721.1 209919637 7000831 2527239..2529053 1 NC_011415.1 putative oligopeptide ABC transporter substrate binding component 2529053 7000831 ECSE_2446 Escherichia coli SE11 putative oligopeptide ABC transporter substrate binding component YP_002293721.1 2527239 D 409438 CDS YP_002293722.1 209919638 7000832 2529054..2530148 1 NC_011415.1 putative oligopeptide ABC transporter permease 2530148 7000832 ECSE_2447 Escherichia coli SE11 putative oligopeptide ABC transporter permease YP_002293722.1 2529054 D 409438 CDS YP_002293723.1 209919639 7000833 2530148..2531173 1 NC_011415.1 putative oligopeptide ABC transporter permease 2531173 7000833 ECSE_2448 Escherichia coli SE11 putative oligopeptide ABC transporter permease YP_002293723.1 2530148 D 409438 CDS YP_002293724.1 209919640 7000834 2531175..2532764 1 NC_011415.1 putative oligopeptide ABC transporter ATP-binding protein 2532764 7000834 ECSE_2449 Escherichia coli SE11 putative oligopeptide ABC transporter ATP-binding protein YP_002293724.1 2531175 D 409438 CDS YP_002293725.1 209919641 7000835 complement(2532768..2533112) 1 NC_011415.1 hypothetical protein 2533112 7000835 ECSE_2450 Escherichia coli SE11 hypothetical protein YP_002293725.1 2532768 R 409438 CDS YP_002293726.1 209919642 7000836 complement(2533445..2534635) 1 NC_011415.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 2534635 7000836 ECSE_2451 Escherichia coli SE11 bicyclomycin/multidrug efflux system YP_002293726.1 2533445 R 409438 CDS YP_002293727.1 209919643 7000837 complement(2534663..2535358) 1 NC_011415.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA; 16S rRNA pseudouridylate synthase A 2535358 7000837 ECSE_2452 Escherichia coli SE11 16S rRNA pseudouridylate synthase A YP_002293727.1 2534663 R 409438 CDS YP_002293728.1 209919644 7000838 2535507..2537267 1 NC_011415.1 putative ATP-dependent helicase 2537267 7000838 ECSE_2453 Escherichia coli SE11 putative ATP-dependent helicase YP_002293728.1 2535507 D 409438 CDS YP_002293729.1 209919645 7000839 2537392..2537676 1 NC_011415.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2537676 7000839 ECSE_2454 Escherichia coli SE11 50S ribosomal protein L25 YP_002293729.1 2537392 D 409438 CDS YP_002293730.1 209919646 7000840 complement(2537815..2538822) 1 NC_011415.1 nucleoid-associated protein NdpA 2538822 7000840 ECSE_2455 Escherichia coli SE11 nucleoid-associated protein NdpA YP_002293730.1 2537815 R 409438 CDS YP_002293731.1 209919647 7000841 2539004..2539231 1 NC_011415.1 hypothetical protein 2539231 7000841 ECSE_2456 Escherichia coli SE11 hypothetical protein YP_002293731.1 2539004 D 409438 CDS YP_002293732.1 209919648 7000842 2539251..2541011 1 NC_011415.1 putative sulfatase 2541011 7000842 ECSE_2457 Escherichia coli SE11 putative sulfatase YP_002293732.1 2539251 D 409438 CDS YP_002293733.1 209919649 7003090 complement(2541266..2541478) 1 NC_011415.1 putative autotransporter 2541478 7003090 ECSE_2458 Escherichia coli SE11 putative autotransporter YP_002293733.1 2541266 R 409438 CDS YP_002293734.1 209919650 7000844 complement(2541491..2543776) 1 NC_011415.1 putative autotransporter 2543776 7000844 ECSE_2459 Escherichia coli SE11 putative autotransporter YP_002293734.1 2541491 R 409438 CDS YP_002293735.1 209919651 7000845 complement(2543888..2544145) 1 NC_011415.1 hypothetical protein 2544145 7000845 ECSE_2460 Escherichia coli SE11 hypothetical protein YP_002293735.1 2543888 R 409438 CDS YP_002293736.1 209919652 7000846 2544177..2544824 1 NC_011415.1 nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; transcriptional regulator NarP 2544824 7000846 ECSE_2461 Escherichia coli SE11 transcriptional regulator NarP YP_002293736.1 2544177 D 409438 CDS YP_002293737.1 209919653 7000847 complement(2544859..2545911) 1 NC_011415.1 putative heme lyase subunit 2545911 7000847 ECSE_2462 Escherichia coli SE11 putative heme lyase subunit YP_002293737.1 2544859 R 409438 CDS YP_002293738.1 209919654 7000848 complement(2545908..2546465) 1 NC_011415.1 disulfide oxidoreductase 2546465 7000848 ECSE_2463 Escherichia coli SE11 disulfide oxidoreductase YP_002293738.1 2545908 R 409438 CDS YP_002293739.1 209919655 7000849 complement(2546462..2548405) 1 NC_011415.1 cytochrome c-type biogenesis protein 2548405 7000849 ECSE_2464 Escherichia coli SE11 cytochrome c-type biogenesis protein YP_002293739.1 2546462 R 409438 CDS YP_002293740.1 209919656 7000850 complement(2548402..2548881) 1 NC_011415.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 2548881 7000850 ECSE_2465 Escherichia coli SE11 cytochrome c-type biogenesis protein CcmE YP_002293740.1 2548402 R 409438 CDS YP_002293741.1 209919657 7000851 complement(2548878..2549087) 1 NC_011415.1 heme export protein D 2549087 7000851 ECSE_2466 Escherichia coli SE11 heme export protein D YP_002293741.1 2548878 R 409438 CDS YP_002293742.1 209919658 7000852 complement(2549084..2549821) 1 NC_011415.1 heme export protein C 2549821 7000852 ECSE_2467 Escherichia coli SE11 heme export protein C YP_002293742.1 2549084 R 409438 CDS YP_002293743.1 209919659 7000853 complement(2549863..2550522) 1 NC_011415.1 heme export protein B 2550522 7000853 ECSE_2468 Escherichia coli SE11 heme export protein B YP_002293743.1 2549863 R 409438 CDS YP_002293744.1 209919660 7000854 complement(2550522..2551139) 1 NC_011415.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 2551139 7000854 ECSE_2469 Escherichia coli SE11 cytochrome c biogenesis protein CcmA YP_002293744.1 2550522 R 409438 CDS YP_002293745.1 209919661 7000855 complement(2551158..2551760) 1 NC_011415.1 with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone; cytochrome c-type protein NapC 2551760 7000855 ECSE_2470 Escherichia coli SE11 cytochrome c-type protein NapC YP_002293745.1 2551158 R 409438 CDS YP_002293746.1 209919662 7000856 complement(2551770..2552219) 1 NC_011415.1 small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA; citrate reductase cytochrome c-type subunit 2552219 napB 7000856 napB Escherichia coli SE11 citrate reductase cytochrome c-type subunit YP_002293746.1 2551770 R 409438 CDS YP_002293747.1 209919663 7000857 complement(2552216..2553079) 1 NC_011415.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 2553079 napH 7000857 napH Escherichia coli SE11 quinol dehydrogenase membrane component YP_002293747.1 2552216 R 409438 CDS YP_002293748.1 209919664 7000858 complement(2553066..2553761) 1 NC_011415.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 2553761 napG 7000858 napG Escherichia coli SE11 quinol dehydrogenase periplasmic component YP_002293748.1 2553066 R 409438 CDS YP_002293749.1 209919665 7000859 complement(2553768..2556254) 1 NC_011415.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 2556254 7000859 ECSE_2474 Escherichia coli SE11 nitrate reductase catalytic subunit YP_002293749.1 2553768 R 409438 CDS YP_002293750.1 209919666 7000860 complement(2556251..2556514) 1 NC_011415.1 assembly protein for periplasmic nitrate reductase 2556514 7000860 ECSE_2475 Escherichia coli SE11 assembly protein for periplasmic nitrate reductase YP_002293750.1 2556251 R 409438 CDS YP_002293751.1 209919667 7000861 complement(2556504..2556998) 1 NC_011415.1 Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.; ferredoxin-type protein 2556998 7000861 ECSE_2476 Escherichia coli SE11 ferredoxin-type protein YP_002293751.1 2556504 R 409438 CDS YP_002293752.1 209919668 7000862 2557406..2557894 1 NC_011415.1 serine protease inhibitor, inhibits trypsin and other proteases; ecotin 2557894 7000862 ECSE_2477 Escherichia coli SE11 ecotin YP_002293752.1 2557406 D 409438 CDS YP_002293753.1 209919669 7000863 complement(2558043..2559689) 1 NC_011415.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 2559689 7000863 ECSE_2478 Escherichia coli SE11 malate:quinone oxidoreductase YP_002293753.1 2558043 R 409438 CDS YP_002293754.1 209919670 7000864 complement(2559907..2561550) 1 NC_011415.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane component/ATP-binding component 2561550 7000864 ECSE_2479 Escherichia coli SE11 multidrug transporter membrane component/ATP-binding component YP_002293754.1 2559907 R 409438 CDS YP_002293755.1 209919671 7000865 complement(2561626..2562276) 1 NC_011415.1 DNA repair protein 2562276 7000865 ECSE_2480 Escherichia coli SE11 DNA repair protein YP_002293755.1 2561626 R 409438 CDS YP_002293756.1 209919672 7000866 complement(2562276..2563340) 1 NC_011415.1 O6-methylguanine-DNA methyltransferase 2563340 7000866 ECSE_2481 Escherichia coli SE11 O6-methylguanine-DNA methyltransferase YP_002293756.1 2562276 R 409438 CDS YP_002293757.1 209919673 7000867 complement(2563414..2564469) 1 NC_011415.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway; thiamine biosynthesis lipoprotein ApbE 2564469 7000867 ECSE_2482 Escherichia coli SE11 thiamine biosynthesis lipoprotein ApbE YP_002293757.1 2563414 R 409438 CDS YP_002293758.1 209919674 7000868 complement(2564581..2565684) 1 NC_011415.1 allows for ions and hydrophilic solutes to cross the outer membrane; outer membrane porin protein C 2565684 7000868 ECSE_2483 Escherichia coli SE11 outer membrane porin protein C YP_002293758.1 2564581 R 409438 CDS YP_002293759.1 209919675 7000869 2566422..2569094 1 NC_011415.1 phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2569094 7000869 ECSE_2484 Escherichia coli SE11 phosphotransfer intermediate protein in two-component regulatory system with RcsBC YP_002293759.1 2566422 D 409438 CDS YP_002293760.1 209919676 7000870 2569111..2569761 1 NC_011415.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 2569761 7000870 ECSE_2485 Escherichia coli SE11 transcriptional regulator RcsB YP_002293760.1 2569111 D 409438 CDS YP_002293761.1 209919677 7000871 complement(2569961..2572810) 1 NC_011415.1 hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2572810 7000871 ECSE_2486 Escherichia coli SE11 hybrid sensory kinase in two-component regulatory system with RcsB and YojN YP_002293761.1 2569961 R 409438 CDS YP_002293762.1 209919678 7000872 complement(2573085..2573861) 1 NC_011415.1 hypothetical protein 2573861 7000872 ECSE_2487 Escherichia coli SE11 hypothetical protein YP_002293762.1 2573085 R 409438 CDS YP_002293763.1 209919679 7000873 complement(2573866..2575515) 1 NC_011415.1 hypothetical protein 2575515 7000873 ECSE_2488 Escherichia coli SE11 hypothetical protein YP_002293763.1 2573866 R 409438 CDS YP_002293764.1 209919680 7000874 complement(2575516..2580045) 1 NC_011415.1 hypothetical protein 2580045 7000874 ECSE_2489 Escherichia coli SE11 hypothetical protein YP_002293764.1 2575516 R 409438 CDS YP_002293765.1 209919681 7000875 complement(2580054..2580677) 1 NC_011415.1 hypothetical protein 2580677 7000875 ECSE_2490 Escherichia coli SE11 hypothetical protein YP_002293765.1 2580054 R 409438 CDS YP_002293766.1 209919682 7000876 complement(2580674..2582362) 1 NC_011415.1 hypothetical protein 2582362 7000876 ECSE_2491 Escherichia coli SE11 hypothetical protein YP_002293766.1 2580674 R 409438 CDS YP_002293767.1 209919683 7000877 complement(2582511..2585138) 1 NC_011415.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2585138 7000877 ECSE_2492 Escherichia coli SE11 DNA gyrase subunit A YP_002293767.1 2582511 R 409438 CDS YP_002293768.1 209919684 7000878 2585285..2586007 1 NC_011415.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2586007 7000878 ECSE_2493 Escherichia coli SE11 3-demethylubiquinone-9 3-methyltransferase YP_002293768.1 2585285 D 409438 CDS YP_002293769.1 209919685 7000879 complement(2586135..2589869) 1 NC_011415.1 adhesin 2589869 7000879 ECSE_2494 Escherichia coli SE11 adhesin YP_002293769.1 2586135 R 409438 CDS YP_002293770.1 209919686 7000880 2590565..2592850 1 NC_011415.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 2592850 7000880 ECSE_2495 Escherichia coli SE11 ribonucleotide-diphosphate reductase subunit alpha YP_002293770.1 2590565 D 409438 CDS YP_002293771.1 209919687 7000881 2592939..2594069 1 NC_011415.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 2594069 nrdB 7000881 nrdB Escherichia coli SE11 ribonucleotide-diphosphate reductase subunit beta YP_002293771.1 2592939 D 409438 CDS YP_002293772.1 209919688 7000882 2594069..2594323 1 NC_011415.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases; 2Fe-2S ferredoxin YfaE 2594323 7000882 ECSE_2497 Escherichia coli SE11 2Fe-2S ferredoxin YfaE YP_002293772.1 2594069 D 409438 CDS YP_002293773.1 209919689 7000883 complement(2594377..2595027) 1 NC_011415.1 hypothetical protein 2595027 7000883 ECSE_2498 Escherichia coli SE11 hypothetical protein YP_002293773.1 2594377 R 409438 CDS YP_002293774.1 209919690 7000884 2595242..2595448 1 NC_011415.1 hypothetical protein 2595448 7000884 ECSE_2499 Escherichia coli SE11 hypothetical protein YP_002293774.1 2595242 D 409438 CDS YP_002293775.1 209919691 7000885 complement(2595490..2596566) 1 NC_011415.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2596566 glpQ 7000885 glpQ Escherichia coli SE11 glycerophosphodiester phosphodiesterase YP_002293775.1 2595490 R 409438 CDS YP_002293776.1 209919692 7000886 complement(2596571..2597929) 1 NC_011415.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell; sn-glycerol-3-phosphate transporter 2597929 glpT 7000886 glpT Escherichia coli SE11 sn-glycerol-3-phosphate transporter YP_002293776.1 2596571 R 409438 CDS YP_002293777.1 209919693 7000887 2597980..2598177 1 NC_011415.1 hypothetical protein 2598177 7000887 ECSE_2502 Escherichia coli SE11 hypothetical protein YP_002293777.1 2597980 D 409438 CDS YP_002293778.1 209919694 7000888 2598202..2599830 1 NC_011415.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 2599830 glpA 7000888 glpA Escherichia coli SE11 sn-glycerol-3-phosphate dehydrogenase subunit A YP_002293778.1 2598202 D 409438 CDS YP_002293779.1 209919695 7000889 2599820..2601079 1 NC_011415.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 2601079 7000889 ECSE_2504 Escherichia coli SE11 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_002293779.1 2599820 D 409438 CDS YP_002293780.1 209919696 7000890 2601076..2602266 1 NC_011415.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 2602266 glpC 7000890 glpC Escherichia coli SE11 sn-glycerol-3-phosphate dehydrogenase subunit C YP_002293780.1 2601076 D 409438 CDS YP_002293781.1 209919697 7000891 2602460..2603362 1 NC_011415.1 hypothetical protein 2603362 7000891 ECSE_2506 Escherichia coli SE11 hypothetical protein YP_002293781.1 2602460 D 409438 CDS YP_002293782.1 209919698 7000892 complement(2603403..2603915) 1 NC_011415.1 hypothetical protein 2603915 7000892 ECSE_2507 Escherichia coli SE11 hypothetical protein YP_002293782.1 2603403 R 409438 CDS YP_002293783.1 209919699 7000893 complement(2603928..2605130) 1 NC_011415.1 competence damage-inducible protein A 2605130 7000893 ECSE_2508 Escherichia coli SE11 competence damage-inducible protein A YP_002293783.1 2603928 R 409438 CDS YP_002293784.1 209919700 7000894 complement(2605230..2605772) 1 NC_011415.1 hypothetical protein 2605772 7000894 ECSE_2509 Escherichia coli SE11 hypothetical protein YP_002293784.1 2605230 R 409438 CDS YP_002293785.1 209919701 7000895 2606051..2606476 1 NC_011415.1 hypothetical protein 2606476 7000895 ECSE_2510 Escherichia coli SE11 hypothetical protein YP_002293785.1 2606051 D 409438 CDS YP_002293786.1 209919702 7000896 complement(2606515..2607117) 1 NC_011415.1 aluminum-inducible protein 2607117 7000896 ECSE_2511 Escherichia coli SE11 aluminum-inducible protein YP_002293786.1 2606515 R 409438 CDS YP_002293787.1 209919703 7000897 2607392..2608564 1 NC_011415.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose; UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase 2608564 7000897 ECSE_2512 Escherichia coli SE11 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase YP_002293787.1 2607392 D 409438 CDS YP_002293788.1 209919704 7000898 2608568..2609536 1 NC_011415.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate; undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase 2609536 7000898 ECSE_2513 Escherichia coli SE11 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002293788.1 2608568 D 409438 CDS YP_002293789.1 209919705 7000899 2609536..2611518 1 NC_011415.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 2611518 7000899 ECSE_2514 Escherichia coli SE11 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_002293789.1 2609536 D 409438 CDS YP_002293790.1 209919706 7000900 2611515..2612405 1 NC_011415.1 hypothetical protein 2612405 7000900 ECSE_2515 Escherichia coli SE11 hypothetical protein YP_002293790.1 2611515 D 409438 CDS YP_002293791.1 209919707 7000901 2612405..2614057 1 NC_011415.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 2614057 arnT 7000901 arnT Escherichia coli SE11 4-amino-4-deoxy-L-arabinose transferase YP_002293791.1 2612405 D 409438 CDS YP_002293792.1 209919708 7000902 2614054..2614389 1 NC_011415.1 hypothetical protein 2614389 7000902 ECSE_2517 Escherichia coli SE11 hypothetical protein YP_002293792.1 2614054 D 409438 CDS YP_002293793.1 209919709 7000903 2614389..2614775 1 NC_011415.1 hypothetical protein 2614775 7000903 ECSE_2518 Escherichia coli SE11 hypothetical protein YP_002293793.1 2614389 D 409438 CDS YP_002293794.1 209919710 7000904 complement(2614769..2615035) 1 NC_011415.1 polymyxin resistance protein 2615035 7000904 ECSE_2519 Escherichia coli SE11 polymyxin resistance protein YP_002293794.1 2614769 R 409438 CDS YP_002293795.1 209919711 7000905 complement(2615145..2616500) 1 NC_011415.1 O-succinylbenzoic acid--CoA ligase 2616500 7000905 ECSE_2520 Escherichia coli SE11 O-succinylbenzoic acid--CoA ligase YP_002293795.1 2615145 R 409438 CDS YP_002293796.1 209919712 7000906 complement(2616497..2617459) 1 NC_011415.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 2617459 7000906 ECSE_2521 Escherichia coli SE11 O-succinylbenzoate synthase YP_002293796.1 2616497 R 409438 CDS YP_002293797.1 209919713 7000907 complement(2617459..2618316) 1 NC_011415.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2618316 7000907 ECSE_2522 Escherichia coli SE11 naphthoate synthase YP_002293797.1 2617459 R 409438 CDS YP_002293798.1 209919714 7000908 complement(2618331..2619089) 1 NC_011415.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 2619089 7000908 ECSE_2523 Escherichia coli SE11 acyl-CoA thioester hydrolase YfbB YP_002293798.1 2618331 R 409438 CDS YP_002293799.1 209919715 7000909 complement(2619086..2620756) 1 NC_011415.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2620756 7000909 ECSE_2524 Escherichia coli SE11 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_002293799.1 2619086 R 409438 CDS YP_002293800.1 209919716 7000910 complement(2620845..2622140) 1 NC_011415.1 isochorismate synthase 2622140 7000910 ECSE_2525 Escherichia coli SE11 isochorismate synthase YP_002293800.1 2620845 R 409438 CDS YP_002293801.1 209919717 7000911 complement(2622219..2622524) 1 NC_011415.1 hypothetical protein 2622524 7000911 ECSE_2526 Escherichia coli SE11 hypothetical protein YP_002293801.1 2622219 R 409438 CDS YP_002293802.1 209919718 7000912 complement(2622579..2623040) 1 NC_011415.1 hypothetical protein 2623040 7000912 ECSE_2527 Escherichia coli SE11 hypothetical protein YP_002293802.1 2622579 R 409438 CDS YP_002293803.1 209919719 7000913 2623105..2624022 1 NC_011415.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2624022 7000913 ECSE_2528 Escherichia coli SE11 ribonuclease Z YP_002293803.1 2623105 D 409438 CDS YP_002293804.1 209919720 7000914 2624210..2625430 1 NC_011415.1 ElaD; specific cysteine protease which targets ubiquitin and ubiquitin-like proteins covalently bound to target proteins; SseL in Salmonella is required for macrophage killing and virulence, and it is secreted by the salmonella pathogenicity island 2 type III secretion system; deubiquitinase 2625430 7000914 ECSE_2529 Escherichia coli SE11 deubiquitinase YP_002293804.1 2624210 D 409438 CDS YP_002293805.1 209919721 7000915 complement(2625740..2625880) 1 NC_011415.1 hypothetical protein 2625880 7000915 ECSE_2530 Escherichia coli SE11 hypothetical protein YP_002293805.1 2625740 R 409438 CDS YP_002293806.1 209919722 7000916 2626075..2626425 1 NC_011415.1 hypothetical protein 2626425 7000916 ECSE_2531 Escherichia coli SE11 hypothetical protein YP_002293806.1 2626075 D 409438 CDS YP_002293807.1 209919723 7000917 2626551..2627054 1 NC_011415.1 hypothetical protein 2627054 7000917 ECSE_2532 Escherichia coli SE11 hypothetical protein YP_002293807.1 2626551 D 409438 CDS YP_002293808.1 209919724 7000918 complement(2627121..2628578) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2628578 7000918 ECSE_2533 Escherichia coli SE11 NADH dehydrogenase subunit N YP_002293808.1 2627121 R 409438 CDS YP_002293809.1 209919725 7000919 complement(2628585..2630114) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2630114 7000919 ECSE_2534 Escherichia coli SE11 NADH dehydrogenase subunit M YP_002293809.1 2628585 R 409438 CDS YP_002293810.1 209919726 7000920 complement(2630278..2632119) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2632119 7000920 ECSE_2535 Escherichia coli SE11 NADH dehydrogenase subunit L YP_002293810.1 2630278 R 409438 CDS YP_002293811.1 209919727 7000921 complement(2632116..2632418) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2632418 7000921 ECSE_2536 Escherichia coli SE11 NADH dehydrogenase subunit K YP_002293811.1 2632116 R 409438 CDS YP_002293812.1 209919728 7000922 complement(2632415..2632969) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2632969 7000922 ECSE_2537 Escherichia coli SE11 NADH dehydrogenase subunit J YP_002293812.1 2632415 R 409438 CDS YP_002293813.1 209919729 7000923 complement(2632981..2633523) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2633523 7000923 ECSE_2538 Escherichia coli SE11 NADH dehydrogenase subunit I YP_002293813.1 2632981 R 409438 CDS YP_002293814.1 209919730 7000924 complement(2633538..2634515) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2634515 7000924 ECSE_2539 Escherichia coli SE11 NADH dehydrogenase subunit H YP_002293814.1 2633538 R 409438 CDS YP_002293815.1 209919731 7000925 complement(2634512..2637244) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2637244 7000925 ECSE_2540 Escherichia coli SE11 NADH dehydrogenase subunit G YP_002293815.1 2634512 R 409438 CDS YP_002293816.1 209919732 7000926 complement(2637291..2638628) 1 NC_011415.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 2638628 7000926 ECSE_2541 Escherichia coli SE11 NADH dehydrogenase I subunit F YP_002293816.1 2637291 R 409438 CDS YP_002293817.1 209919733 7000927 complement(2638625..2639125) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2639125 7000927 ECSE_2542 Escherichia coli SE11 NADH dehydrogenase subunit E YP_002293817.1 2638625 R 409438 CDS YP_002293818.1 209919734 7000928 complement(2639128..2640930) 1 NC_011415.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2640930 7000928 ECSE_2543 Escherichia coli SE11 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_002293818.1 2639128 R 409438 CDS YP_002293819.1 209919735 7000929 complement(2641024..2641686) 1 NC_011415.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2641686 7000929 ECSE_2544 Escherichia coli SE11 NADH dehydrogenase subunit B YP_002293819.1 2641024 R 409438 CDS YP_002293820.1 209919736 7000930 complement(2641702..2642145) 1 NC_011415.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2642145 7000930 ECSE_2545 Escherichia coli SE11 NADH dehydrogenase subunit A YP_002293820.1 2641702 R 409438 CDS YP_002293821.1 209919737 7000931 complement(2642776..2643714) 1 NC_011415.1 NADH dehydrogenase transcriptional regulator 2643714 7000931 ECSE_2546 Escherichia coli SE11 NADH dehydrogenase transcriptional regulator YP_002293821.1 2642776 R 409438 CDS YP_002293822.1 209919738 7000932 2644634..2645851 1 NC_011415.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2645851 7000932 ECSE_2547 Escherichia coli SE11 aminotransferase AlaT YP_002293822.1 2644634 D 409438 CDS YP_002293823.1 209919739 7000933 2645935..2646534 1 NC_011415.1 hypothetical protein 2646534 7000933 ECSE_2548 Escherichia coli SE11 hypothetical protein YP_002293823.1 2645935 D 409438 CDS YP_002293824.1 209919740 7000934 complement(2646593..2648425) 1 NC_011415.1 putative sodium/sulfate transport protein 2648425 7000934 ECSE_2549 Escherichia coli SE11 putative sodium/sulfate transport protein YP_002293824.1 2646593 R 409438 CDS YP_002293825.1 209919741 7000935 complement(2648512..2649162) 1 NC_011415.1 putative phosphatase 2649162 7000935 ECSE_2550 Escherichia coli SE11 putative phosphatase YP_002293825.1 2648512 R 409438 CDS YP_002293826.1 209919742 7000936 complement(2649173..2649667) 1 NC_011415.1 hypothetical protein 2649667 7000936 ECSE_2551 Escherichia coli SE11 hypothetical protein YP_002293826.1 2649173 R 409438 CDS YP_002293827.1 209919743 7000937 complement(2649750..2650205) 1 NC_011415.1 hypothetical protein 2650205 7000937 ECSE_2552 Escherichia coli SE11 hypothetical protein YP_002293827.1 2649750 R 409438 CDS YP_002293828.1 209919744 7000938 complement(2650274..2650405) 1 NC_011415.1 hypothetical protein 2650405 7000938 ECSE_2553 Escherichia coli SE11 hypothetical protein YP_002293828.1 2650274 R 409438 CDS YP_002293829.1 209919745 7000939 2650543..2651745 1 NC_011415.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2651745 7000939 ECSE_2554 Escherichia coli SE11 acetate kinase YP_002293829.1 2650543 D 409438 CDS YP_002293830.1 209919746 7000940 2651820..2653964 1 NC_011415.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 2653964 7000940 ECSE_2555 Escherichia coli SE11 phosphate acetyltransferase YP_002293830.1 2651820 D 409438 CDS YP_002293831.1 209919747 7000941 2654133..2655674 1 NC_011415.1 hypothetical protein 2655674 7000941 ECSE_2556 Escherichia coli SE11 hypothetical protein YP_002293831.1 2654133 D 409438 CDS YP_002293832.1 209919748 7000942 complement(2655707..2656249) 1 NC_011415.1 hypothetical protein 2656249 7000942 ECSE_2557 Escherichia coli SE11 hypothetical protein YP_002293832.1 2655707 R 409438 CDS YP_002293833.1 209919749 7000943 complement(2656307..2656858) 1 NC_011415.1 phosphodiesterase 2656858 7000943 ECSE_2558 Escherichia coli SE11 phosphodiesterase YP_002293833.1 2656307 R 409438 CDS YP_002293834.1 209919750 7000944 complement(2656914..2657558) 1 NC_011415.1 hypothetical protein 2657558 7000944 ECSE_2559 Escherichia coli SE11 hypothetical protein YP_002293834.1 2656914 R 409438 CDS YP_002293835.1 209919751 7000945 2657694..2658341 1 NC_011415.1 glutathione S-transferase 2658341 7000945 ECSE_2560 Escherichia coli SE11 glutathione S-transferase YP_002293835.1 2657694 D 409438 CDS YP_002293836.1 209919752 7000946 2658398..2658760 1 NC_011415.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 2658760 folX 7000946 folX Escherichia coli SE11 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_002293836.1 2658398 D 409438 CDS YP_002293837.1 209919753 7000947 2658781..2659674 1 NC_011415.1 hypothetical protein 2659674 7000947 ECSE_2562 Escherichia coli SE11 hypothetical protein YP_002293837.1 2658781 D 409438 CDS YP_002293838.1 209919754 7000948 complement(2659722..2660267) 1 NC_011415.1 hypothetical protein 2660267 7000948 ECSE_2563 Escherichia coli SE11 hypothetical protein YP_002293838.1 2659722 R 409438 CDS YP_002293839.1 209919755 7000949 complement(2660386..2661111) 1 NC_011415.1 phage DNA modification protein 2661111 7000949 ECSE_2564 Escherichia coli SE11 phage DNA modification protein YP_002293839.1 2660386 R 409438 CDS YP_002293840.1 209919756 7000950 complement(2661303..2661896) 1 NC_011415.1 phage DNA invertase 2661896 7000950 ECSE_2565 Escherichia coli SE11 phage DNA invertase YP_002293840.1 2661303 R 409438 CDS YP_002293841.1 209919757 7000951 2661926..2662921 1 NC_011415.1 putative phage tail fiber protein 2662921 7000951 ECSE_2566 Escherichia coli SE11 putative phage tail fiber protein YP_002293841.1 2661926 D 409438 CDS YP_002293842.1 209919758 7000952 2662924..2663457 1 NC_011415.1 phage tail fiber assembly protein 2663457 7000952 ECSE_2567 Escherichia coli SE11 phage tail fiber assembly protein YP_002293842.1 2662924 D 409438 CDS YP_002293843.1 209919759 7000953 complement(2663486..2664013) 1 NC_011415.1 phage tail fiber assembly protein 2664013 7000953 ECSE_2568 Escherichia coli SE11 phage tail fiber assembly protein YP_002293843.1 2663486 R 409438 CDS YP_002293844.1 209919760 7000954 complement(2664017..2665519) 1 NC_011415.1 phage tail fiber protein 2665519 7000954 ECSE_2569 Escherichia coli SE11 phage tail fiber protein YP_002293844.1 2664017 R 409438 CDS YP_002293845.1 209919761 7000955 complement(2665519..2666061) 1 NC_011415.1 hypothetical protein 2666061 7000955 ECSE_2570 Escherichia coli SE11 hypothetical protein YP_002293845.1 2665519 R 409438 CDS YP_002293846.1 209919762 7000956 complement(2666052..2667134) 1 NC_011415.1 hypothetical protein 2667134 7000956 ECSE_2571 Escherichia coli SE11 hypothetical protein YP_002293846.1 2666052 R 409438 CDS YP_002293847.1 209919763 7000957 complement(2667135..2667572) 1 NC_011415.1 hypothetical protein 2667572 7000957 ECSE_2572 Escherichia coli SE11 hypothetical protein YP_002293847.1 2667135 R 409438 CDS YP_002293848.1 209919764 7000958 complement(2667569..2668162) 1 NC_011415.1 hypothetical protein 2668162 7000958 ECSE_2573 Escherichia coli SE11 hypothetical protein YP_002293848.1 2667569 R 409438 CDS YP_002293849.1 209919765 7000959 complement(2668150..2669289) 1 NC_011415.1 hypothetical protein 2669289 7000959 ECSE_2574 Escherichia coli SE11 hypothetical protein YP_002293849.1 2668150 R 409438 CDS YP_002293850.1 209919766 7000960 complement(2669282..2670769) 1 NC_011415.1 phage DNA circulation protein 2670769 7000960 ECSE_2575 Escherichia coli SE11 phage DNA circulation protein YP_002293850.1 2669282 R 409438 CDS YP_002293851.1 209919767 7000961 complement(2670774..2672885) 1 NC_011415.1 phage tape measure protein 2672885 7000961 ECSE_2576 Escherichia coli SE11 phage tape measure protein YP_002293851.1 2670774 R 409438 CDS YP_002293852.1 209919768 7000962 complement(2673030..2673464) 1 NC_011415.1 hypothetical protein 2673464 7000962 ECSE_2577 Escherichia coli SE11 hypothetical protein YP_002293852.1 2673030 R 409438 CDS YP_002293853.1 209919769 7000963 complement(2673474..2673830) 1 NC_011415.1 hypothetical protein 2673830 7000963 ECSE_2578 Escherichia coli SE11 hypothetical protein YP_002293853.1 2673474 R 409438 CDS YP_002293854.1 209919770 7000964 complement(2673840..2675327) 1 NC_011415.1 phage major tail subunit 2675327 7000964 ECSE_2579 Escherichia coli SE11 phage major tail subunit YP_002293854.1 2673840 R 409438 CDS YP_002293855.1 209919771 7000965 complement(2675324..2675530) 1 NC_011415.1 hypothetical protein 2675530 7000965 ECSE_2580 Escherichia coli SE11 hypothetical protein YP_002293855.1 2675324 R 409438 CDS YP_002293856.1 209919772 7000966 complement(2675514..2676062) 1 NC_011415.1 hypothetical protein 2676062 7000966 ECSE_2581 Escherichia coli SE11 hypothetical protein YP_002293856.1 2675514 R 409438 CDS YP_002293857.1 209919773 7000967 complement(2676062..2676484) 1 NC_011415.1 hypothetical protein 2676484 7000967 ECSE_2582 Escherichia coli SE11 hypothetical protein YP_002293857.1 2676062 R 409438 CDS YP_002293858.1 209919774 7000968 complement(2676481..2676891) 1 NC_011415.1 hypothetical protein 2676891 7000968 ECSE_2583 Escherichia coli SE11 hypothetical protein YP_002293858.1 2676481 R 409438 CDS YP_002293859.1 209919775 7000969 complement(2676958..2677875) 1 NC_011415.1 putative phage major head subunit 2677875 7000969 ECSE_2584 Escherichia coli SE11 putative phage major head subunit YP_002293859.1 2676958 R 409438 CDS YP_002293860.1 209919776 7000970 complement(2677872..2678957) 1 NC_011415.1 putative phage protease 2678957 7000970 ECSE_2585 Escherichia coli SE11 putative phage protease YP_002293860.1 2677872 R 409438 CDS YP_002293861.1 209919777 7000971 complement(2679159..2679629) 1 NC_011415.1 phage virion morphogenesis protein 2679629 7000971 ECSE_2586 Escherichia coli SE11 phage virion morphogenesis protein YP_002293861.1 2679159 R 409438 CDS YP_002293862.1 209919778 7000972 complement(2679626..2680945) 1 NC_011415.1 hypothetical protein 2680945 7000972 ECSE_2587 Escherichia coli SE11 hypothetical protein YP_002293862.1 2679626 R 409438 CDS YP_002293863.1 209919779 7000973 complement(2680926..2682464) 1 NC_011415.1 hypothetical protein 2682464 7000973 ECSE_2588 Escherichia coli SE11 hypothetical protein YP_002293863.1 2680926 R 409438 CDS YP_002293864.1 209919780 7000974 complement(2682464..2684119) 1 NC_011415.1 putative phage portal protein 2684119 7000974 ECSE_2589 Escherichia coli SE11 putative phage portal protein YP_002293864.1 2682464 R 409438 CDS YP_002293865.1 209919781 7000975 2684174..2684359 1 NC_011415.1 hypothetical protein 2684359 7000975 ECSE_2590 Escherichia coli SE11 hypothetical protein YP_002293865.1 2684174 D 409438 CDS YP_002293866.1 209919782 7000976 complement(2684349..2684582) 1 NC_011415.1 hypothetical protein 2684582 7000976 ECSE_2591 Escherichia coli SE11 hypothetical protein YP_002293866.1 2684349 R 409438 CDS YP_002293867.1 209919783 7000977 complement(2684557..2685132) 1 NC_011415.1 hypothetical protein 2685132 7000977 ECSE_2592 Escherichia coli SE11 hypothetical protein YP_002293867.1 2684557 R 409438 CDS YP_002293868.1 209919784 7000978 complement(2685144..2685434) 1 NC_011415.1 hypothetical protein 2685434 7000978 ECSE_2593 Escherichia coli SE11 hypothetical protein YP_002293868.1 2685144 R 409438 CDS YP_002293869.1 209919785 7000979 complement(2685431..2685730) 1 NC_011415.1 hypothetical protein 2685730 7000979 ECSE_2594 Escherichia coli SE11 hypothetical protein YP_002293869.1 2685431 R 409438 CDS YP_002293870.1 209919786 7000980 complement(2685743..2686171) 1 NC_011415.1 putative phage endolysin 2686171 7000980 ECSE_2595 Escherichia coli SE11 putative phage endolysin YP_002293870.1 2685743 R 409438 CDS YP_002293871.1 209919787 7000981 complement(2686274..2686684) 1 NC_011415.1 putative phage transcription regulator 2686684 7000981 ECSE_2596 Escherichia coli SE11 putative phage transcription regulator YP_002293871.1 2686274 R 409438 CDS YP_002293872.1 209919788 7000982 complement(2686817..2687197) 1 NC_011415.1 hypothetical protein 2687197 7000982 ECSE_2597 Escherichia coli SE11 hypothetical protein YP_002293872.1 2686817 R 409438 CDS YP_002293873.1 209919789 7000983 complement(2687401..2687994) 1 NC_011415.1 hypothetical protein 2687994 7000983 ECSE_2598 Escherichia coli SE11 hypothetical protein YP_002293873.1 2687401 R 409438 CDS YP_002293874.1 209919790 7000984 complement(2688044..2688433) 1 NC_011415.1 putative phage transcription regulator 2688433 7000984 ECSE_2599 Escherichia coli SE11 putative phage transcription regulator YP_002293874.1 2688044 R 409438 CDS YP_002293875.1 209919791 7000985 complement(2688430..2688981) 1 NC_011415.1 hypothetical protein 2688981 7000985 ECSE_2600 Escherichia coli SE11 hypothetical protein YP_002293875.1 2688430 R 409438 CDS YP_002293876.1 209919792 7000986 2689012..2689428 1 NC_011415.1 hypothetical protein 2689428 7000986 ECSE_2601 Escherichia coli SE11 hypothetical protein YP_002293876.1 2689012 D 409438 CDS YP_002293877.1 209919793 7000987 complement(2689694..2689906) 1 NC_011415.1 hypothetical protein 2689906 7000987 ECSE_2602 Escherichia coli SE11 hypothetical protein YP_002293877.1 2689694 R 409438 CDS YP_002293878.1 209919794 7000988 complement(2690020..2690256) 1 NC_011415.1 hypothetical protein 2690256 7000988 ECSE_2603 Escherichia coli SE11 hypothetical protein YP_002293878.1 2690020 R 409438 CDS YP_002293879.1 209919795 7000989 complement(2690234..2690542) 1 NC_011415.1 hypothetical protein 2690542 7000989 ECSE_2604 Escherichia coli SE11 hypothetical protein YP_002293879.1 2690234 R 409438 CDS YP_002293880.1 209919796 7000990 complement(2690583..2691107) 1 NC_011415.1 phage host-nuclease inhibitor protein Gam 2691107 7000990 ECSE_2605 Escherichia coli SE11 phage host-nuclease inhibitor protein Gam YP_002293880.1 2690583 R 409438 CDS YP_002293881.1 209919797 7000991 complement(2691127..2691426) 1 NC_011415.1 hypothetical protein 2691426 7000991 ECSE_2606 Escherichia coli SE11 hypothetical protein YP_002293881.1 2691127 R 409438 CDS YP_002293882.1 209919798 7000992 complement(2691427..2691846) 1 NC_011415.1 hypothetical protein 2691846 7000992 ECSE_2607 Escherichia coli SE11 hypothetical protein YP_002293882.1 2691427 R 409438 CDS YP_002293883.1 209919799 7000993 complement(2691867..2692172) 1 NC_011415.1 hypothetical protein 2692172 7000993 ECSE_2608 Escherichia coli SE11 hypothetical protein YP_002293883.1 2691867 R 409438 CDS YP_002293884.1 209919800 7000994 complement(2692150..2692362) 1 NC_011415.1 hypothetical protein 2692362 7000994 ECSE_2609 Escherichia coli SE11 hypothetical protein YP_002293884.1 2692150 R 409438 CDS YP_002293885.1 209919801 7000995 complement(2692370..2692594) 1 NC_011415.1 putative phage kil protein 2692594 7000995 ECSE_2610 Escherichia coli SE11 putative phage kil protein YP_002293885.1 2692370 R 409438 CDS YP_002293886.1 209919802 7000996 complement(2692611..2693549) 1 NC_011415.1 putative phage DNA transposition protein 2693549 7000996 ECSE_2611 Escherichia coli SE11 putative phage DNA transposition protein YP_002293886.1 2692611 R 409438 CDS YP_002293887.1 209919803 7000997 complement(2693588..2695585) 1 NC_011415.1 putative phage transposase 2695585 7000997 ECSE_2612 Escherichia coli SE11 putative phage transposase YP_002293887.1 2693588 R 409438 CDS YP_002293888.1 209919804 7000998 2696018..2696584 1 NC_011415.1 putative phage repressor protein 2696584 7000998 ECSE_2613 Escherichia coli SE11 putative phage repressor protein YP_002293888.1 2696018 D 409438 CDS YP_002293889.1 209919805 7000999 complement(2696862..2697281) 1 NC_011415.1 hypothetical protein 2697281 7000999 ECSE_2614 Escherichia coli SE11 hypothetical protein YP_002293889.1 2696862 R 409438 CDS YP_002293890.1 209919806 7001000 complement(2697478..2698251) 1 NC_011415.1 histidine/lysine/arginine/ornithine transporter subunit 2698251 7001000 ECSE_2615 Escherichia coli SE11 histidine/lysine/arginine/ornithine transporter subunit YP_002293890.1 2697478 R 409438 CDS YP_002293891.1 209919807 7001001 complement(2698259..2698975) 1 NC_011415.1 histidine ABC transporter permease 2698975 7001001 ECSE_2616 Escherichia coli SE11 histidine ABC transporter permease YP_002293891.1 2698259 R 409438 CDS YP_002293892.1 209919808 7001002 complement(2698972..2699658) 1 NC_011415.1 histidine ABC transporter permease 2699658 7001002 ECSE_2617 Escherichia coli SE11 histidine ABC transporter permease YP_002293892.1 2698972 R 409438 CDS YP_002293893.1 209919809 7001003 complement(2699748..2700530) 1 NC_011415.1 histidine ABC transporter substrate binding component 2700530 7001003 ECSE_2618 Escherichia coli SE11 histidine ABC transporter substrate binding component YP_002293893.1 2699748 R 409438 CDS YP_002293894.1 209919810 7001004 complement(2700751..2701533) 1 NC_011415.1 histidine ABC transporter substrate binding component 2701533 7001004 ECSE_2619 Escherichia coli SE11 histidine ABC transporter substrate binding component YP_002293894.1 2700751 R 409438 CDS YP_002293895.1 209919811 7001005 complement(2701799..2702368) 1 NC_011415.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2702368 7001005 ECSE_2620 Escherichia coli SE11 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002293895.1 2701799 R 409438 CDS YP_002293896.1 209919812 7001006 complement(2702463..2703980) 1 NC_011415.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2703980 7001006 ECSE_2621 Escherichia coli SE11 amidophosphoribosyltransferase YP_002293896.1 2702463 R 409438 CDS YP_002293897.1 209919813 7001007 complement(2704017..2704505) 1 NC_011415.1 membrane protein required for colicin V production; colicin V production protein 2704505 7001007 ECSE_2622 Escherichia coli SE11 colicin V production protein YP_002293897.1 2704017 R 409438 CDS YP_002293898.1 209919814 7001008 complement(2704764..2705426) 1 NC_011415.1 hypothetical protein 2705426 7001008 ECSE_2623 Escherichia coli SE11 hypothetical protein YP_002293898.1 2704764 R 409438 CDS YP_002293899.1 209919815 7001009 complement(2705416..2706684) 1 NC_011415.1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2706684 7001009 ECSE_2624 Escherichia coli SE11 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_002293899.1 2705416 R 409438 CDS YP_002293900.1 209919816 7001010 complement(2706754..2707668) 1 NC_011415.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2707668 7001010 ECSE_2625 Escherichia coli SE11 acetyl-CoA carboxylase subunit beta YP_002293900.1 2706754 R 409438 CDS YP_002293901.1 209919817 7001011 complement(2707824..2708483) 1 NC_011415.1 hypothetical protein 2708483 7001011 ECSE_2626 Escherichia coli SE11 hypothetical protein YP_002293901.1 2707824 R 409438 CDS YP_002293902.1 209919818 7001012 complement(2708566..2709378) 1 NC_011415.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2709378 truA 7001012 truA Escherichia coli SE11 tRNA pseudouridine synthase A YP_002293902.1 2708566 R 409438 CDS YP_002293903.1 209919819 7001013 complement(2709378..2710391) 1 NC_011415.1 putative semialdehyde dehydrogenase 2710391 7001013 ECSE_2628 Escherichia coli SE11 putative semialdehyde dehydrogenase YP_002293903.1 2709378 R 409438 CDS YP_002293904.1 209919820 7001014 complement(2710457..2711593) 1 NC_011415.1 erythronate-4-phosphate dehydrogenase 2711593 7001014 ECSE_2629 Escherichia coli SE11 erythronate-4-phosphate dehydrogenase YP_002293904.1 2710457 R 409438 CDS YP_002293905.1 209919821 7001015 2711692..2712687 1 NC_011415.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein; flagella biosynthesis regulator 2712687 flk 7001015 flk Escherichia coli SE11 flagella biosynthesis regulator YP_002293905.1 2711692 D 409438 CDS YP_002293906.1 209919822 7001016 complement(2712684..2713862) 1 NC_011415.1 hypothetical protein 2713862 7001016 ECSE_2631 Escherichia coli SE11 hypothetical protein YP_002293906.1 2712684 R 409438 CDS YP_002293907.1 209919823 7001017 complement(2714173..2715393) 1 NC_011415.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 2715393 7001017 ECSE_2632 Escherichia coli SE11 3-oxoacyl-(acyl carrier protein) synthase I YP_002293907.1 2714173 R 409438 CDS YP_002293908.1 209919824 7001018 2715492..2717558 1 NC_011415.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 2717558 mnmC 7001018 mnmC Escherichia coli SE11 5-methylaminomethyl-2-thiouridine methyltransferase YP_002293908.1 2715492 D 409438 CDS YP_002293909.1 209919825 7001019 complement(2717679..2717957) 1 NC_011415.1 hypothetical protein 2717957 7001019 ECSE_2634 Escherichia coli SE11 hypothetical protein YP_002293909.1 2717679 R 409438 CDS YP_002293910.1 209919826 7001020 complement(2717991..2718539) 1 NC_011415.1 putative transporting ATPase 2718539 7001020 ECSE_2635 Escherichia coli SE11 putative transporting ATPase YP_002293910.1 2717991 R 409438 CDS YP_002293911.1 209919827 7001021 complement(2718539..2719348) 1 NC_011415.1 hypothetical protein 2719348 7001021 ECSE_2636 Escherichia coli SE11 hypothetical protein YP_002293911.1 2718539 R 409438 CDS YP_002293912.1 209919828 7001022 complement(2719348..2720172) 1 NC_011415.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 2720172 mepA 7001022 mepA Escherichia coli SE11 penicillin-insensitive murein endopeptidase YP_002293912.1 2719348 R 409438 CDS YP_002293913.1 209919829 7001023 complement(2720176..2721261) 1 NC_011415.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2721261 7001023 ECSE_2638 Escherichia coli SE11 chorismate synthase YP_002293913.1 2720176 R 409438 CDS YP_002293914.1 209919830 7001024 complement(2721296..2722228) 1 NC_011415.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2722228 7001024 ECSE_2639 Escherichia coli SE11 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002293914.1 2721296 R 409438 CDS YP_002293915.1 209919831 7001025 2722394..2722945 1 NC_011415.1 hypothetical protein 2722945 7001025 ECSE_2640 Escherichia coli SE11 hypothetical protein YP_002293915.1 2722394 D 409438 CDS YP_002293916.1 209919832 7001026 complement(2723139..2724119) 1 NC_011415.1 transposase 2724119 7001026 ECSE_2641 Escherichia coli SE11 transposase YP_002293916.1 2723139 R 409438 CDS YP_002293917.1 209919833 7001027 complement(2724346..2725218) 1 NC_011415.1 hypothetical protein 2725218 7001027 ECSE_2642 Escherichia coli SE11 hypothetical protein YP_002293917.1 2724346 R 409438 CDS YP_002293918.1 209919834 7001028 complement(2725205..2725729) 1 NC_011415.1 putative fimbrial protein 2725729 7001028 ECSE_2643 Escherichia coli SE11 putative fimbrial protein YP_002293918.1 2725205 R 409438 CDS YP_002293919.1 209919835 7001029 complement(2725726..2726196) 1 NC_011415.1 putative fimbrial protein 2726196 7001029 ECSE_2644 Escherichia coli SE11 putative fimbrial protein YP_002293919.1 2725726 R 409438 CDS YP_002293920.1 209919836 7001030 complement(2726193..2726699) 1 NC_011415.1 putative fimbrial protein 2726699 7001030 ECSE_2645 Escherichia coli SE11 putative fimbrial protein YP_002293920.1 2726193 R 409438 CDS YP_002293921.1 209919837 7001031 complement(2726716..2727468) 1 NC_011415.1 putative fimbrial chaperone 2727468 7001031 ECSE_2646 Escherichia coli SE11 putative fimbrial chaperone YP_002293921.1 2726716 R 409438 CDS YP_002293922.1 209919838 7001032 complement(2727488..2730130) 1 NC_011415.1 putative fimbrial usher protein 2730130 7001032 ECSE_2647 Escherichia coli SE11 putative fimbrial usher protein YP_002293922.1 2727488 R 409438 CDS YP_002293923.1 209919839 7001033 complement(2730212..2730775) 1 NC_011415.1 putative fimbrial protein 2730775 7001033 ECSE_2648 Escherichia coli SE11 putative fimbrial protein YP_002293923.1 2730212 R 409438 CDS YP_002293924.1 209919840 7001034 complement(2731450..2731935) 1 NC_011415.1 phosphohistidine phosphatase 2731935 7001034 ECSE_2649 Escherichia coli SE11 phosphohistidine phosphatase YP_002293924.1 2731450 R 409438 CDS YP_002293925.1 209919841 7001035 complement(2732138..2734282) 1 NC_011415.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate; multifunctional fatty acid oxidation complex subunit alpha 2734282 fadJ 7001035 fadJ Escherichia coli SE11 multifunctional fatty acid oxidation complex subunit alpha YP_002293925.1 2732138 R 409438 CDS YP_002293926.1 209919842 7001036 complement(2734282..2735592) 1 NC_011415.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2735592 fadI 7001036 fadI Escherichia coli SE11 3-ketoacyl-CoA thiolase YP_002293926.1 2734282 R 409438 CDS YP_002293927.1 209919843 7001037 complement(2735772..2736080) 1 NC_011415.1 hypothetical protein 2736080 7001037 ECSE_2652 Escherichia coli SE11 hypothetical protein YP_002293927.1 2735772 R 409438 CDS YP_002293928.1 209919844 7001038 2736422..2737768 1 NC_011415.1 long-chain fatty acid outer membrane transporter 2737768 7001038 ECSE_2653 Escherichia coli SE11 long-chain fatty acid outer membrane transporter YP_002293928.1 2736422 D 409438 CDS YP_002293929.1 209919845 7001039 2738134..2739192 1 NC_011415.1 hypothetical protein 2739192 7001039 ECSE_2654 Escherichia coli SE11 hypothetical protein YP_002293929.1 2738134 D 409438 CDS YP_002293930.1 209919846 7001040 complement(2739374..2740129) 1 NC_011415.1 lipoprotein precursor 2740129 7001040 ECSE_2655 Escherichia coli SE11 lipoprotein precursor YP_002293930.1 2739374 R 409438 CDS YP_002293931.1 209919847 7001041 complement(2740155..2740325) 1 NC_011415.1 hypothetical protein 2740325 7001041 ECSE_2656 Escherichia coli SE11 hypothetical protein YP_002293931.1 2740155 R 409438 CDS YP_002293932.1 209919848 7001042 2740423..2741355 1 NC_011415.1 putative transport protein 2741355 7001042 ECSE_2657 Escherichia coli SE11 putative transport protein YP_002293932.1 2740423 D 409438 CDS YP_002293933.1 209919849 7003091 complement(2741946..2743193) 1 NC_011415.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease 2743193 lacY 7003091 lacY Escherichia coli SE11 galactoside permease YP_002293933.1 2741946 R 409438 CDS YP_002293934.1 209919850 7001044 complement(2743265..2744179) 1 NC_011415.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 2744179 7001044 ECSE_2659 Escherichia coli SE11 aminoimidazole riboside kinase YP_002293934.1 2743265 R 409438 CDS YP_002293935.1 209919851 7001045 2744395..2745828 1 NC_011415.1 sucrose hydrolase 2745828 7001045 ECSE_2660 Escherichia coli SE11 sucrose hydrolase YP_002293935.1 2744395 D 409438 CDS YP_002293936.1 209919852 7001046 complement(2745836..2746831) 1 NC_011415.1 sucrose operon repressor 2746831 7001046 ECSE_2661 Escherichia coli SE11 sucrose operon repressor YP_002293936.1 2745836 R 409438 CDS YP_002293937.1 209919853 7001047 2747074..2747292 1 NC_011415.1 hypothetical protein 2747292 7001047 ECSE_2662 Escherichia coli SE11 hypothetical protein YP_002293937.1 2747074 D 409438 CDS YP_002293938.1 209919854 7001048 2747310..2748638 1 NC_011415.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 2748638 7001048 ECSE_2663 Escherichia coli SE11 D-serine dehydratase YP_002293938.1 2747310 D 409438 CDS YP_002293939.1 209919855 7001049 complement(2748746..2750284) 1 NC_011415.1 multidrug resistance protein 2750284 7001049 ECSE_2664 Escherichia coli SE11 multidrug resistance protein YP_002293939.1 2748746 R 409438 CDS YP_002293940.1 209919856 7001050 complement(2750284..2751447) 1 NC_011415.1 multidrug resistance protein 2751447 7001050 ECSE_2665 Escherichia coli SE11 multidrug resistance protein YP_002293940.1 2750284 R 409438 CDS YP_002293941.1 209919857 7001051 2751863..2752477 1 NC_011415.1 response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance; DNA-binding transcriptional activator EvgA 2752477 7001051 ECSE_2666 Escherichia coli SE11 DNA-binding transcriptional activator EvgA YP_002293941.1 2751863 D 409438 CDS YP_002293942.1 209919858 7001052 2752482..2756075 1 NC_011415.1 hybrid sensory histidine kinase in two-component regulatory system with EvgA 2756075 7001052 ECSE_2667 Escherichia coli SE11 hybrid sensory histidine kinase in two-component regulatory system with EvgA YP_002293942.1 2752482 D 409438 CDS YP_002293943.1 209919859 7001053 complement(2756131..2757315) 1 NC_011415.1 hypothetical protein 2757315 7001053 ECSE_2668 Escherichia coli SE11 hypothetical protein YP_002293943.1 2756131 R 409438 CDS YP_002293944.1 209919860 7001054 complement(2757350..2758294) 1 NC_011415.1 member of the AEC family of auxin efflux transporters; unknown function; putative transporter YfdV 2758294 7001054 ECSE_2669 Escherichia coli SE11 putative transporter YfdV YP_002293944.1 2757350 R 409438 CDS YP_002293945.1 209919861 7001055 complement(2758364..2760058) 1 NC_011415.1 catalyzes the formation of formyl-CoA from oxalyl-CoA; putative oxalyl-CoA decarboxylase 2760058 7001055 ECSE_2670 Escherichia coli SE11 putative oxalyl-CoA decarboxylase YP_002293945.1 2758364 R 409438 CDS YP_002293946.1 209919862 7001056 complement(2760112..2761362) 1 NC_011415.1 catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA; formyl-coenzyme A transferase 2761362 7001056 ECSE_2671 Escherichia coli SE11 formyl-coenzyme A transferase YP_002293946.1 2760112 R 409438 CDS YP_002293947.1 209919863 7001057 complement(2761875..2762507) 1 NC_011415.1 hypothetical protein 2762507 7001057 ECSE_2672 Escherichia coli SE11 hypothetical protein YP_002293947.1 2761875 R 409438 CDS YP_002293948.1 209919864 7001058 2762803..2763078 1 NC_011415.1 hypothetical protein 2763078 7001058 ECSE_2673 Escherichia coli SE11 hypothetical protein YP_002293948.1 2762803 D 409438 CDS YP_002293949.1 209919865 7001059 complement(2763155..2763397) 1 NC_011415.1 hypothetical protein 2763397 7001059 ECSE_2674 Escherichia coli SE11 hypothetical protein YP_002293949.1 2763155 R 409438 CDS YP_002293950.1 209919866 7001060 2763750..2764670 1 NC_011415.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock; lipid A biosynthesis palmitoleoyl acyltransferase 2764670 7001060 ECSE_2675 Escherichia coli SE11 lipid A biosynthesis palmitoleoyl acyltransferase YP_002293950.1 2763750 D 409438 CDS YP_002293951.1 209919867 7001061 complement(2765162..2766400) 1 NC_011415.1 aminotransferase 2766400 7001061 ECSE_2676 Escherichia coli SE11 aminotransferase YP_002293951.1 2765162 R 409438 CDS YP_002293952.1 209919868 7001062 2766777..2768474 1 NC_011415.1 putative two-component sensor kinase 2768474 7001062 ECSE_2677 Escherichia coli SE11 putative two-component sensor kinase YP_002293952.1 2766777 D 409438 CDS YP_002293953.1 209919869 7001063 2768489..2769223 1 NC_011415.1 putative two-component response regulator 2769223 7001063 ECSE_2678 Escherichia coli SE11 putative two-component response regulator YP_002293953.1 2768489 D 409438 CDS YP_002293954.1 209919870 7001064 2769236..2770093 1 NC_011415.1 putative transcriptional regulator 2770093 7001064 ECSE_2679 Escherichia coli SE11 putative transcriptional regulator YP_002293954.1 2769236 D 409438 CDS YP_002293955.1 209919871 7001065 complement(2770096..2772591) 1 NC_011415.1 putative PTS system IIA component 2772591 7001065 ECSE_2680 Escherichia coli SE11 putative PTS system IIA component YP_002293955.1 2770096 R 409438 CDS YP_002293956.1 209919872 7001066 complement(2772616..2773653) 1 NC_011415.1 metalloprotein; exoaminopeptidase 2773653 7001066 ECSE_2681 Escherichia coli SE11 exoaminopeptidase YP_002293956.1 2772616 R 409438 CDS YP_002293957.1 209919873 7001067 complement(2773653..2774738) 1 NC_011415.1 Xaa-Pro aminopeptidase; limited methionine aminopeptidase; aminopeptidase 2774738 7001067 ECSE_2682 Escherichia coli SE11 aminopeptidase YP_002293957.1 2773653 R 409438 CDS YP_002293958.1 209919874 7001068 complement(2774753..2776000) 1 NC_011415.1 putative transport protein 2776000 7001068 ECSE_2683 Escherichia coli SE11 putative transport protein YP_002293958.1 2774753 R 409438 CDS YP_002293959.1 209919875 7001069 complement(2776022..2776348) 1 NC_011415.1 putative PTS system IIB component 2776348 7001069 ECSE_2684 Escherichia coli SE11 putative PTS system IIB component YP_002293959.1 2776022 R 409438 CDS YP_002293960.1 209919876 7001070 complement(2776567..2777532) 1 NC_011415.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 2777532 glk 7001070 glk Escherichia coli SE11 glucokinase YP_002293960.1 2776567 R 409438 CDS YP_002293961.1 209919877 7001071 2777736..2778992 1 NC_011415.1 hypothetical protein 2778992 7001071 ECSE_2686 Escherichia coli SE11 hypothetical protein YP_002293961.1 2777736 D 409438 CDS YP_002293962.1 209919878 7001072 2779107..2779433 1 NC_011415.1 hypothetical protein 2779433 7001072 ECSE_2687 Escherichia coli SE11 hypothetical protein YP_002293962.1 2779107 D 409438 CDS YP_002293963.1 209919879 7001073 complement(2779574..2780812) 1 NC_011415.1 manganese transport protein MntH 2780812 7001073 ECSE_2688 Escherichia coli SE11 manganese transport protein MntH YP_002293963.1 2779574 R 409438 CDS YP_002293964.1 209919880 7001074 2781148..2782350 1 NC_011415.1 nucleoside transport protein 2782350 7001074 ECSE_2689 Escherichia coli SE11 nucleoside transport protein YP_002293964.1 2781148 D 409438 CDS YP_002293965.1 209919881 7001075 complement(2782400..2784589) 1 NC_011415.1 hypothetical protein 2784589 7001075 ECSE_2690 Escherichia coli SE11 hypothetical protein YP_002293965.1 2782400 R 409438 CDS YP_002293966.1 209919882 7003138 2785223..2785567 1 NC_011415.1 hypothetical protein 2785567 7003138 ECSE_2691 Escherichia coli SE11 hypothetical protein YP_002293966.1 2785223 D 409438 CDS YP_002293967.1 209919883 7001077 2785569..2785961 1 NC_011415.1 hypothetical protein 2785961 7001077 ECSE_2692 Escherichia coli SE11 hypothetical protein YP_002293967.1 2785569 D 409438 CDS YP_002293968.1 209919884 7001078 complement(2786013..2787428) 1 NC_011415.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2787428 gltX 7001078 gltX Escherichia coli SE11 glutamyl-tRNA synthetase YP_002293968.1 2786013 R 409438 CDS YP_002293969.1 209919885 7003095 complement(2788349..2789233) 1 NC_011415.1 DNA-binding transcriptional activator XapR 2789233 7003095 ECSE_2694 Escherichia coli SE11 DNA-binding transcriptional activator XapR YP_002293969.1 2788349 R 409438 CDS YP_002293970.1 209919886 7001080 complement(2789274..2789432) 1 NC_011415.1 hypothetical protein 2789432 7001080 ECSE_2695 Escherichia coli SE11 hypothetical protein YP_002293970.1 2789274 R 409438 CDS YP_002293971.1 209919887 7001081 complement(2789485..2790741) 1 NC_011415.1 xanthosine transport protein 2790741 7001081 ECSE_2696 Escherichia coli SE11 xanthosine transport protein YP_002293971.1 2789485 R 409438 CDS YP_002293972.1 209919888 7001082 complement(2790801..2791634) 1 NC_011415.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2791634 7001082 ECSE_2697 Escherichia coli SE11 purine nucleoside phosphorylase YP_002293972.1 2790801 R 409438 CDS YP_002293973.1 209919889 7001083 2791883..2792647 1 NC_011415.1 hypothetical protein 2792647 7001083 ECSE_2698 Escherichia coli SE11 hypothetical protein YP_002293973.1 2791883 D 409438 CDS YP_002293974.1 209919890 7001084 complement(2792686..2793612) 1 NC_011415.1 putative transcriptional regulator 2793612 7001084 ECSE_2699 Escherichia coli SE11 putative transcriptional regulator YP_002293974.1 2792686 R 409438 CDS YP_002293975.1 209919891 7001085 2793702..2794700 1 NC_011415.1 putative cytochrome oxidase 2794700 7001085 ECSE_2700 Escherichia coli SE11 putative cytochrome oxidase YP_002293975.1 2793702 D 409438 CDS YP_002293976.1 209919892 7001086 complement(2794697..2794915) 1 NC_011415.1 hypothetical protein 2794915 7001086 ECSE_2701 Escherichia coli SE11 hypothetical protein YP_002293976.1 2794697 R 409438 CDS YP_002293977.1 209919893 7001087 complement(2794917..2796932) 1 NC_011415.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2796932 ligA 7001087 ligA Escherichia coli SE11 NAD-dependent DNA ligase LigA YP_002293977.1 2794917 R 409438 CDS YP_002293978.1 209919894 7001088 complement(2797003..2797989) 1 NC_011415.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 2797989 7001088 ECSE_2703 Escherichia coli SE11 cell division protein ZipA YP_002293978.1 2797003 R 409438 CDS YP_002293979.1 209919895 7001089 2798219..2798980 1 NC_011415.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 2798980 7001089 ECSE_2704 Escherichia coli SE11 putative sulfate transport protein CysZ YP_002293979.1 2798219 D 409438 CDS YP_002293980.1 209919896 7001090 2799165..2800136 1 NC_011415.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 2800136 7001090 ECSE_2705 Escherichia coli SE11 cysteine synthase A YP_002293980.1 2799165 D 409438 CDS YP_002293981.1 209919897 7001091 2800520..2800777 1 NC_011415.1 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr 2800777 7001091 ECSE_2706 Escherichia coli SE11 PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr YP_002293981.1 2800520 D 409438 CDS YP_002293982.1 209919898 7001092 2800822..2802549 1 NC_011415.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 2802549 7001092 ECSE_2707 Escherichia coli SE11 phosphoenolpyruvate-protein phosphotransferase YP_002293982.1 2800822 D 409438 CDS YP_002293983.1 209919899 7001093 2802590..2803099 1 NC_011415.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 2803099 7001093 ECSE_2708 Escherichia coli SE11 PTS system glucose-specific transporter subunit YP_002293983.1 2802590 D 409438 CDS YP_002293984.1 209919900 7001094 complement(2803141..2803992) 1 NC_011415.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxal kinase 2803992 pdxK 7001094 pdxK Escherichia coli SE11 pyridoxal kinase YP_002293984.1 2803141 R 409438 CDS YP_002293985.1 209919901 7001095 2804097..2804465 1 NC_011415.1 hypothetical protein 2804465 7001095 ECSE_2710 Escherichia coli SE11 hypothetical protein YP_002293985.1 2804097 D 409438 CDS YP_002293986.1 209919902 7001096 complement(2804468..2805379) 1 NC_011415.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 2805379 cysM 7001096 cysM Escherichia coli SE11 cysteine synthase B YP_002293986.1 2804468 R 409438 CDS YP_002293987.1 209919903 7001097 complement(2805513..2806610) 1 NC_011415.1 sulfate/thiosulfate transporter subunit 2806610 7001097 ECSE_2712 Escherichia coli SE11 sulfate/thiosulfate transporter subunit YP_002293987.1 2805513 R 409438 CDS YP_002293988.1 209919904 7001098 complement(2806600..2807475) 1 NC_011415.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import; sulfate/thiosulfate transporter permease subunit 2807475 cysW 7001098 cysW Escherichia coli SE11 sulfate/thiosulfate transporter permease subunit YP_002293988.1 2806600 R 409438 CDS YP_002293989.1 209919905 7001099 complement(2807475..2808308) 1 NC_011415.1 sulfate/thiosulfate transporter subunit 2808308 7001099 ECSE_2714 Escherichia coli SE11 sulfate/thiosulfate transporter subunit YP_002293989.1 2807475 R 409438 CDS YP_002293990.1 209919906 7001100 complement(2808308..2809324) 1 NC_011415.1 thiosulfate transporter subunit 2809324 7001100 ECSE_2715 Escherichia coli SE11 thiosulfate transporter subunit YP_002293990.1 2808308 R 409438 CDS YP_002293991.1 209919907 7001101 complement(2809495..2810286) 1 NC_011415.1 short chain dehydrogenase 2810286 7001101 ECSE_2716 Escherichia coli SE11 short chain dehydrogenase YP_002293991.1 2809495 R 409438 CDS YP_002293992.1 209919908 7001102 complement(2810415..2811272) 1 NC_011415.1 hypothetical protein 2811272 7001102 ECSE_2717 Escherichia coli SE11 hypothetical protein YP_002293992.1 2810415 R 409438 CDS YP_002293993.1 209919909 7001103 2811436..2812332 1 NC_011415.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 2812332 murQ 7001103 murQ Escherichia coli SE11 N-acetylmuramic acid-6-phosphate etherase YP_002293993.1 2811436 D 409438 CDS YP_002293994.1 209919910 7001104 2812336..2813760 1 NC_011415.1 belongs to PEP-dependent PTS system; contains the PTS EIIBC domains; involved in uptake of exogenous N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme IIA-glucose component; PTS system N-acetylmuramic acid transporter subunits EIIBC 2813760 murP 7001104 murP Escherichia coli SE11 PTS system N-acetylmuramic acid transporter subunits EIIBC YP_002293994.1 2812336 D 409438 CDS YP_002293995.1 209919911 7001105 2813777..2815069 1 NC_011415.1 hypothetical protein 2815069 7001105 ECSE_2720 Escherichia coli SE11 hypothetical protein YP_002293995.1 2813777 D 409438 CDS YP_002293996.1 209919912 7001106 complement(2815127..2816053) 1 NC_011415.1 hypothetical protein 2816053 7001106 ECSE_2721 Escherichia coli SE11 hypothetical protein YP_002293996.1 2815127 R 409438 CDS YP_002293997.1 209919913 7001107 complement(2816122..2816697) 1 NC_011415.1 hypothetical protein 2816697 7001107 ECSE_2722 Escherichia coli SE11 hypothetical protein YP_002293997.1 2816122 R 409438 CDS YP_002293998.1 209919914 7001108 complement(2816758..2817207) 1 NC_011415.1 hypothetical protein 2817207 7001108 ECSE_2723 Escherichia coli SE11 hypothetical protein YP_002293998.1 2816758 R 409438 CDS YP_002293999.1 209919915 7001109 complement(2817194..2817619) 1 NC_011415.1 putative acetyltransferase 2817619 7001109 ECSE_2724 Escherichia coli SE11 putative acetyltransferase YP_002293999.1 2817194 R 409438 CDS YP_002294000.1 209919916 7001110 2817833..2818702 1 NC_011415.1 N-acetylmuramoyl-l-alanine amidase I 2818702 7001110 ECSE_2725 Escherichia coli SE11 N-acetylmuramoyl-l-alanine amidase I YP_002294000.1 2817833 D 409438 CDS YP_002294001.1 209919917 7001111 2818706..2819605 1 NC_011415.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2819605 7001111 ECSE_2726 Escherichia coli SE11 coproporphyrinogen III oxidase YP_002294001.1 2818706 D 409438 CDS YP_002294002.1 209919918 7001112 complement(2819611..2820663) 1 NC_011415.1 activates the transcription of the ethanolamine utilization operon; transcriptional regulator EutR 2820663 7001112 ECSE_2727 Escherichia coli SE11 transcriptional regulator EutR YP_002294002.1 2819611 R 409438 CDS YP_002294003.1 209919919 7001113 complement(2820709..2821215) 1 NC_011415.1 hypothetical protein 2821215 7001113 ECSE_2728 Escherichia coli SE11 hypothetical protein YP_002294003.1 2820709 R 409438 CDS YP_002294004.1 209919920 7001114 complement(2821222..2821881) 1 NC_011415.1 ethanolamine utilization protein EutL 2821881 7001114 ECSE_2729 Escherichia coli SE11 ethanolamine utilization protein EutL YP_002294004.1 2821222 R 409438 CDS YP_002294005.1 209919921 7001115 complement(2821891..2822778) 1 NC_011415.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 2822778 7001115 ECSE_2730 Escherichia coli SE11 ethanolamine ammonia-lyase small subunit YP_002294005.1 2821891 R 409438 CDS YP_002294006.1 209919922 7001116 complement(2822799..2824160) 1 NC_011415.1 ethanolamine ammonia-lyase heavy chain 2824160 7001116 ECSE_2731 Escherichia coli SE11 ethanolamine ammonia-lyase heavy chain YP_002294006.1 2822799 R 409438 CDS YP_002294007.1 209919923 7001117 complement(2824172..2825575) 1 NC_011415.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 2825575 eutA 7001117 eutA Escherichia coli SE11 reactivating factor for ethanolamine ammonia lyase YP_002294007.1 2824172 R 409438 CDS YP_002294008.1 209919924 7001118 complement(2825572..2826798) 1 NC_011415.1 ethanolamine utilization protein EutH 2826798 7001118 ECSE_2733 Escherichia coli SE11 ethanolamine utilization protein EutH YP_002294008.1 2825572 R 409438 CDS YP_002294009.1 209919925 7001119 complement(2826915..2828102) 1 NC_011415.1 ethanolamine utilization protein EutG 2828102 7001119 ECSE_2734 Escherichia coli SE11 ethanolamine utilization protein EutG YP_002294009.1 2826915 R 409438 CDS YP_002294010.1 209919926 7001120 complement(2828092..2828928) 1 NC_011415.1 ethanolamine utilization protein EutJ 2828928 7001120 ECSE_2735 Escherichia coli SE11 ethanolamine utilization protein EutJ YP_002294010.1 2828092 R 409438 CDS YP_002294011.1 209919927 7001121 complement(2828939..2830342) 1 NC_011415.1 ethanolamine utilization protein EutE 2830342 7001121 ECSE_2736 Escherichia coli SE11 ethanolamine utilization protein EutE YP_002294011.1 2828939 R 409438 CDS YP_002294012.1 209919928 7001122 complement(2830354..2830641) 1 NC_011415.1 ethanolamine utilization protein EutN 2830641 7001122 ECSE_2737 Escherichia coli SE11 ethanolamine utilization protein EutN YP_002294012.1 2830354 R 409438 CDS YP_002294013.1 209919929 7001123 complement(2830748..2831041) 1 NC_011415.1 ethanolamine utilization protein EutN 2831041 7001123 ECSE_2738 Escherichia coli SE11 ethanolamine utilization protein EutN YP_002294013.1 2830748 R 409438 CDS YP_002294014.1 209919930 7001124 complement(2831080..2832096) 1 NC_011415.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2832096 eutD 7001124 eutD Escherichia coli SE11 phosphotransacetylase YP_002294014.1 2831080 R 409438 CDS YP_002294015.1 209919931 7001125 complement(2832093..2832896) 1 NC_011415.1 putative cobalamin adenosyltransferase 2832896 7001125 ECSE_2740 Escherichia coli SE11 putative cobalamin adenosyltransferase YP_002294015.1 2832093 R 409438 CDS YP_002294016.1 209919932 7001126 complement(2832893..2833594) 1 NC_011415.1 ethanolamine utilization protein EutQ 2833594 7001126 ECSE_2741 Escherichia coli SE11 ethanolamine utilization protein EutQ YP_002294016.1 2832893 R 409438 CDS YP_002294017.1 209919933 7001127 complement(2833569..2834048) 1 NC_011415.1 ethanolamine utilization protein EutP 2834048 7001127 ECSE_2742 Escherichia coli SE11 ethanolamine utilization protein EutP YP_002294017.1 2833569 R 409438 CDS YP_002294018.1 209919934 7001128 complement(2834061..2834468) 1 NC_011415.1 putative ethanolamine utilization protein 2834468 7001128 ECSE_2743 Escherichia coli SE11 putative ethanolamine utilization protein YP_002294018.1 2834061 R 409438 CDS YP_002294019.1 209919935 7001129 complement(2834689..2836968) 1 NC_011415.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2836968 7001129 ECSE_2744 Escherichia coli SE11 malic enzyme YP_002294019.1 2834689 R 409438 CDS YP_002294020.1 209919936 7001130 2837257..2838207 1 NC_011415.1 transaldolase A 2838207 7001130 ECSE_2745 Escherichia coli SE11 transaldolase A YP_002294020.1 2837257 D 409438 CDS YP_002294021.1 209919937 7001131 2838227..2840230 1 NC_011415.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2840230 7001131 ECSE_2746 Escherichia coli SE11 transketolase YP_002294021.1 2838227 D 409438 CDS YP_002294022.1 209919938 7001132 complement(2840326..2841369) 1 NC_011415.1 hypothetical protein 2841369 7001132 ECSE_2747 Escherichia coli SE11 hypothetical protein YP_002294022.1 2840326 R 409438 CDS YP_002294023.1 209919939 7001133 complement(2841495..2842070) 1 NC_011415.1 hypothetical protein 2842070 7001133 ECSE_2748 Escherichia coli SE11 hypothetical protein YP_002294023.1 2841495 R 409438 CDS YP_002294024.1 209919940 7001134 complement(2842138..2844117) 1 NC_011415.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit 2844117 7001134 ECSE_2749 Escherichia coli SE11 putative oxidoreductase Fe-S binding subunit YP_002294024.1 2842138 R 409438 CDS YP_002294025.1 209919941 7001135 2844323..2846023 1 NC_011415.1 nitrate/nitrite sensor protein NarQ 2846023 7001135 ECSE_2750 Escherichia coli SE11 nitrate/nitrite sensor protein NarQ YP_002294025.1 2844323 D 409438 CDS YP_002294026.1 209919942 7001136 2846187..2849300 1 NC_011415.1 aminoglycoside/multidrug efflux system 2849300 7001136 ECSE_2751 Escherichia coli SE11 aminoglycoside/multidrug efflux system YP_002294026.1 2846187 D 409438 CDS YP_002294027.1 209919943 7001137 2849839..2850195 1 NC_011415.1 hypothetical protein 2850195 7001137 ECSE_2752 Escherichia coli SE11 hypothetical protein YP_002294027.1 2849839 D 409438 CDS YP_002294028.1 209919944 7001138 2850199..2851326 1 NC_011415.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2851326 7001138 ECSE_2753 Escherichia coli SE11 succinyl-diaminopimelate desuccinylase YP_002294028.1 2850199 D 409438 CDS YP_002294029.1 209919945 7001139 2851354..2851554 1 NC_011415.1 hypothetical protein 2851554 7001139 ECSE_2754 Escherichia coli SE11 hypothetical protein YP_002294029.1 2851354 D 409438 CDS YP_002294030.1 209919946 7001140 complement(2851664..2852362) 1 NC_011415.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YpfH 2852362 7001140 ECSE_2755 Escherichia coli SE11 esterase YpfH YP_002294030.1 2851664 R 409438 CDS YP_002294031.1 209919947 7001141 complement(2852436..2854451) 1 NC_011415.1 hypothetical protein 2854451 7001141 ECSE_2756 Escherichia coli SE11 hypothetical protein YP_002294031.1 2852436 R 409438 CDS YP_002294032.1 209919948 7001142 complement(2854466..2855329) 1 NC_011415.1 hypothetical protein 2855329 7001142 ECSE_2757 Escherichia coli SE11 hypothetical protein YP_002294032.1 2854466 R 409438 CDS YP_002294033.1 209919949 7001143 complement(2855476..2855874) 1 NC_011415.1 stability determinant protein; plasmid maintenance protein 2855874 7001143 ECSE_2758 Escherichia coli SE11 plasmid maintenance protein YP_002294033.1 2855476 R 409438 CDS YP_002294034.1 209919950 7001144 complement(2855874..2856101) 1 NC_011415.1 hypothetical protein 2856101 7001144 ECSE_2759 Escherichia coli SE11 hypothetical protein YP_002294034.1 2855874 R 409438 CDS YP_002294035.1 209919951 7001145 complement(2856256..2856969) 1 NC_011415.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2856969 7001145 ECSE_2760 Escherichia coli SE11 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002294035.1 2856256 R 409438 CDS YP_002294036.1 209919952 7001146 complement(2857182..2858216) 1 NC_011415.1 lipoprotein 2858216 7001146 ECSE_2761 Escherichia coli SE11 lipoprotein YP_002294036.1 2857182 R 409438 CDS YP_002294037.1 209919953 7001147 complement(2858233..2859111) 1 NC_011415.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2859111 7001147 ECSE_2762 Escherichia coli SE11 dihydrodipicolinate synthase YP_002294037.1 2858233 R 409438 CDS YP_002294038.1 209919954 7001148 2859191..2859829 1 NC_011415.1 negative transcriptional regulator of the gcvTHP operon; glycine cleavage system transcriptional repressor 2859829 gcvR 7001148 gcvR Escherichia coli SE11 glycine cleavage system transcriptional repressor YP_002294038.1 2859191 D 409438 CDS YP_002294039.1 209919955 7001149 2859829..2860299 1 NC_011415.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 2860299 bcp 7001149 bcp Escherichia coli SE11 thioredoxin-dependent thiol peroxidase YP_002294039.1 2859829 D 409438 CDS YP_002294040.1 209919956 7001150 2860552..2861169 1 NC_011415.1 hydrogenase 4 Fe-S subunit 2861169 7001150 ECSE_2765 Escherichia coli SE11 hydrogenase 4 Fe-S subunit YP_002294040.1 2860552 D 409438 CDS YP_002294041.1 209919957 7001151 2861169..2863187 1 NC_011415.1 hydrogenase 4 subunit B 2863187 7001151 ECSE_2766 Escherichia coli SE11 hydrogenase 4 subunit B YP_002294041.1 2861169 D 409438 CDS YP_002294042.1 209919958 7001152 2863198..2864145 1 NC_011415.1 hydrogenase 4 membrane subunit 2864145 7001152 ECSE_2767 Escherichia coli SE11 hydrogenase 4 membrane subunit YP_002294042.1 2863198 D 409438 CDS YP_002294043.1 209919959 7001153 2864162..2864617 1 NC_011415.1 putative hydrogenase 4 membrane subunit 2864617 7001153 ECSE_2768 Escherichia coli SE11 putative hydrogenase 4 membrane subunit YP_002294043.1 2864162 D 409438 CDS YP_002294044.1 209919960 7001154 2864614..2865600 1 NC_011415.1 putative hydrogenase 4 membrane subunit 2865600 7001154 ECSE_2769 Escherichia coli SE11 putative hydrogenase 4 membrane subunit YP_002294044.1 2864614 D 409438 CDS YP_002294045.1 209919961 7001155 2865612..2866262 1 NC_011415.1 interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit 2866262 hyfE 7001155 hyfE Escherichia coli SE11 hydrogenase 4 membrane subunit YP_002294045.1 2865612 D 409438 CDS YP_002294046.1 209919962 7001156 2866267..2867847 1 NC_011415.1 hydrogenase 4 subunit F 2867847 7001156 ECSE_2771 Escherichia coli SE11 hydrogenase 4 subunit F YP_002294046.1 2866267 D 409438 CDS YP_002294047.1 209919963 7001157 2867837..2869552 1 NC_011415.1 hydrogenase 4 membrane subunit 2869552 7001157 ECSE_2772 Escherichia coli SE11 hydrogenase 4 membrane subunit YP_002294047.1 2867837 D 409438 CDS YP_002294048.1 209919964 7001158 2869562..2870101 1 NC_011415.1 probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far; hydrogenase 4 subunit H 2870101 7001158 ECSE_2773 Escherichia coli SE11 hydrogenase 4 subunit H YP_002294048.1 2869562 D 409438 CDS YP_002294049.1 209919965 7001159 2870098..2870856 1 NC_011415.1 hydrogenase 4 Fe-S subunit 2870856 7001159 ECSE_2774 Escherichia coli SE11 hydrogenase 4 Fe-S subunit YP_002294049.1 2870098 D 409438 CDS YP_002294050.1 209919966 7001160 2870849..2871262 1 NC_011415.1 putative protein processing protein 2871262 7001160 ECSE_2775 Escherichia coli SE11 putative protein processing protein YP_002294050.1 2870849 D 409438 CDS YP_002294051.1 209919967 7001161 2871313..2873304 1 NC_011415.1 putative two-component response regulator 2873304 7001161 ECSE_2776 Escherichia coli SE11 putative two-component response regulator YP_002294051.1 2871313 D 409438 CDS YP_002294052.1 209919968 7001162 2873326..2874057 1 NC_011415.1 formate transport protein 2874057 7001162 ECSE_2777 Escherichia coli SE11 formate transport protein YP_002294052.1 2873326 D 409438 CDS YP_002294053.1 209919969 7001163 complement(2874211..2875272) 1 NC_011415.1 putative transport protein 2875272 7001163 ECSE_2778 Escherichia coli SE11 putative transport protein YP_002294053.1 2874211 R 409438 CDS YP_002294054.1 209919970 7001164 2875303..2875479 1 NC_011415.1 hypothetical protein 2875479 7001164 ECSE_2779 Escherichia coli SE11 hypothetical protein YP_002294054.1 2875303 D 409438 CDS YP_002294055.1 209919971 7001165 2875485..2876948 1 NC_011415.1 hypothetical protein 2876948 7001165 ECSE_2780 Escherichia coli SE11 hypothetical protein YP_002294055.1 2875485 D 409438 CDS YP_002294056.1 209919972 7001166 2876969..2877328 1 NC_011415.1 putative oxidoreductase 2877328 7001166 ECSE_2781 Escherichia coli SE11 putative oxidoreductase YP_002294056.1 2876969 D 409438 CDS YP_002294057.1 209919973 7001167 complement(2877466..2878212) 1 NC_011415.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 2878212 7001167 ECSE_2782 Escherichia coli SE11 DNA replication initiation factor YP_002294057.1 2877466 R 409438 CDS YP_002294058.1 209919974 7001168 complement(2878262..2879551) 1 NC_011415.1 uracil transporter 2879551 7001168 ECSE_2783 Escherichia coli SE11 uracil transporter YP_002294058.1 2878262 R 409438 CDS YP_002294059.1 209919975 7001169 complement(2879637..2880263) 1 NC_011415.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2880263 upp 7001169 upp Escherichia coli SE11 uracil phosphoribosyltransferase YP_002294059.1 2879637 R 409438 CDS YP_002294060.1 209919976 7001170 2880588..2881625 1 NC_011415.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2881625 7001170 ECSE_2785 Escherichia coli SE11 phosphoribosylaminoimidazole synthetase YP_002294060.1 2880588 D 409438 CDS YP_002294061.1 209919977 7001171 2881625..2882263 1 NC_011415.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2882263 purN 7001171 purN Escherichia coli SE11 phosphoribosylglycinamide formyltransferase YP_002294061.1 2881625 D 409438 CDS YP_002294062.1 209919978 7001172 2882434..2884500 1 NC_011415.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2884500 7001172 ECSE_2787 Escherichia coli SE11 polyphosphate kinase YP_002294062.1 2882434 D 409438 CDS YP_002294063.1 209919979 7001173 2884505..2886046 1 NC_011415.1 exopolyphosphatase 2886046 7001173 ECSE_2788 Escherichia coli SE11 exopolyphosphatase YP_002294063.1 2884505 D 409438 CDS YP_002294064.1 209919980 7001174 complement(2886085..2888328) 1 NC_011415.1 hypothetical protein 2888328 7001174 ECSE_2789 Escherichia coli SE11 hypothetical protein YP_002294064.1 2886085 R 409438 CDS YP_002294065.1 209919981 7001175 complement(2888545..2888835) 1 NC_011415.1 hypothetical protein 2888835 7001175 ECSE_2790 Escherichia coli SE11 hypothetical protein YP_002294065.1 2888545 R 409438 CDS YP_002294066.1 209919982 7001176 2889182..2889700 1 NC_011415.1 putative lipoprotein 2889700 7001176 ECSE_2791 Escherichia coli SE11 putative lipoprotein YP_002294066.1 2889182 D 409438 CDS YP_002294067.1 209919983 7001177 2889716..2890255 1 NC_011415.1 hypothetical protein 2890255 7001177 ECSE_2792 Escherichia coli SE11 hypothetical protein YP_002294067.1 2889716 D 409438 CDS YP_002294068.1 209919984 7001178 complement(2890348..2891925) 1 NC_011415.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2891925 guaA 7001178 guaA Escherichia coli SE11 GMP synthase YP_002294068.1 2890348 R 409438 CDS YP_002294069.1 209919985 7001179 complement(2891994..2893460) 1 NC_011415.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 2893460 7001179 ECSE_2794 Escherichia coli SE11 inosine 5'-monophosphate dehydrogenase YP_002294069.1 2891994 R 409438 CDS YP_002294070.1 209919986 7001180 2893622..2894992 1 NC_011415.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2894992 xseA 7001180 xseA Escherichia coli SE11 exodeoxyribonuclease VII large subunit YP_002294070.1 2893622 D 409438 CDS YP_002294071.1 209919987 7001181 complement(2894989..2895204) 1 NC_011415.1 hypothetical protein 2895204 7001181 ECSE_2796 Escherichia coli SE11 hypothetical protein YP_002294071.1 2894989 R 409438 CDS YP_002294072.1 209919988 7001182 complement(2895273..2896745) 1 NC_011415.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2896745 engA 7001182 engA Escherichia coli SE11 GTP-binding protein EngA YP_002294072.1 2895273 R 409438 CDS YP_002294073.1 209919989 7001183 complement(2896863..2898041) 1 NC_011415.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 2898041 7001183 ECSE_2798 Escherichia coli SE11 outer membrane protein assembly complex subunit YfgL YP_002294073.1 2896863 R 409438 CDS YP_002294074.1 209919990 7001184 complement(2898052..2898672) 1 NC_011415.1 hypothetical protein 2898672 7001184 ECSE_2799 Escherichia coli SE11 hypothetical protein YP_002294074.1 2898052 R 409438 CDS YP_002294075.1 209919991 7001185 complement(2898690..2899964) 1 NC_011415.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2899964 hisS 7001185 hisS Escherichia coli SE11 histidyl-tRNA synthetase YP_002294075.1 2898690 R 409438 CDS YP_002294076.1 209919992 7001186 complement(2900075..2901193) 1 NC_011415.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2901193 ispG 7001186 ispG Escherichia coli SE11 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002294076.1 2900075 R 409438 CDS YP_002294077.1 209919993 7001187 complement(2901220..2902233) 1 NC_011415.1 cytoskeletal protein RodZ 2902233 7001187 ECSE_2802 Escherichia coli SE11 cytoskeletal protein RodZ YP_002294077.1 2901220 R 409438 CDS YP_002294078.1 209919994 7001188 complement(2902518..2903672) 1 NC_011415.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2903672 7001188 ECSE_2803 Escherichia coli SE11 ribosomal RNA large subunit methyltransferase N YP_002294078.1 2902518 R 409438 CDS YP_002294079.1 209919995 7001189 complement(2903822..2904253) 1 NC_011415.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 2904253 ndk 7001189 ndk Escherichia coli SE11 nucleoside diphosphate kinase YP_002294079.1 2903822 R 409438 CDS YP_002294080.1 209919996 7001190 complement(2904402..2906714) 1 NC_011415.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 2906714 7001190 ECSE_2805 Escherichia coli SE11 penicillin-binding protein 1C YP_002294080.1 2904402 R 409438 CDS YP_002294081.1 209919997 7001191 complement(2906715..2911673) 1 NC_011415.1 hypothetical protein 2911673 7001191 ECSE_2806 Escherichia coli SE11 hypothetical protein YP_002294081.1 2906715 R 409438 CDS YP_002294082.1 209919998 7001192 2911880..2912725 1 NC_011415.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds; 3-mercaptopyruvate sulfurtransferase 2912725 sseA 7001192 sseA Escherichia coli SE11 3-mercaptopyruvate sulfurtransferase YP_002294082.1 2911880 D 409438 CDS YP_002294083.1 209919999 7001193 complement(2913218..2914003) 1 NC_011415.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; enhanced serine sensitivity protein SseB 2914003 7001193 ECSE_2808 Escherichia coli SE11 enhanced serine sensitivity protein SseB YP_002294083.1 2913218 R 409438 CDS YP_002294084.1 209920000 7001194 complement(2914136..2915419) 1 NC_011415.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 2915419 7001194 ECSE_2809 Escherichia coli SE11 aminopeptidase B YP_002294084.1 2914136 R 409438 CDS YP_002294085.1 209920001 7001195 complement(2915597..2915797) 1 NC_011415.1 hypothetical protein 2915797 7001195 ECSE_2810 Escherichia coli SE11 hypothetical protein YP_002294085.1 2915597 R 409438 CDS YP_002294086.1 209920002 7001196 complement(2915809..2916144) 1 NC_011415.1 ferredoxin 2916144 7001196 ECSE_2811 Escherichia coli SE11 ferredoxin YP_002294086.1 2915809 R 409438 CDS YP_002294087.1 209920003 7001197 complement(2916146..2917996) 1 NC_011415.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2917996 hscA 7001197 hscA Escherichia coli SE11 chaperone protein HscA YP_002294087.1 2916146 R 409438 CDS YP_002294088.1 209920004 7001198 complement(2918013..2918528) 1 NC_011415.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2918528 hscB 7001198 hscB Escherichia coli SE11 co-chaperone HscB YP_002294088.1 2918013 R 409438 CDS YP_002294089.1 209920005 7001199 complement(2918624..2918947) 1 NC_011415.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein; iron-sulfur cluster assembly protein 2918947 iscA 7001199 iscA Escherichia coli SE11 iron-sulfur cluster assembly protein YP_002294089.1 2918624 R 409438 CDS YP_002294090.1 209920006 7001200 complement(2918964..2919350) 1 NC_011415.1 scaffold protein 2919350 7001200 ECSE_2815 Escherichia coli SE11 scaffold protein YP_002294090.1 2918964 R 409438 CDS YP_002294091.1 209920007 7001201 complement(2919378..2920592) 1 NC_011415.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 2920592 7001201 ECSE_2816 Escherichia coli SE11 cysteine desulfurase YP_002294091.1 2919378 R 409438 CDS YP_002294092.1 209920008 7001202 complement(2920704..2921192) 1 NC_011415.1 regulates the expression of the iscRSUA operon; DNA-binding transcriptional regulator IscR 2921192 7001202 ECSE_2817 Escherichia coli SE11 DNA-binding transcriptional regulator IscR YP_002294092.1 2920704 R 409438 CDS YP_002294093.1 209920009 7001203 2921305..2921439 1 NC_011415.1 hypothetical protein 2921439 7001203 ECSE_2818 Escherichia coli SE11 hypothetical protein YP_002294093.1 2921305 D 409438 CDS YP_002294094.1 209920010 7001204 complement(2921493..2922230) 1 NC_011415.1 putative RNA methyltransferase 2922230 7001204 ECSE_2819 Escherichia coli SE11 putative RNA methyltransferase YP_002294094.1 2921493 R 409438 CDS YP_002294095.1 209920011 7001205 2922349..2923152 1 NC_011415.1 inositol monophosphatase 2923152 7001205 ECSE_2820 Escherichia coli SE11 inositol monophosphatase YP_002294095.1 2922349 D 409438 CDS YP_002294096.1 209920012 7001206 2923297..2924151 1 NC_011415.1 hypothetical protein 2924151 7001206 ECSE_2821 Escherichia coli SE11 hypothetical protein YP_002294096.1 2923297 D 409438 CDS YP_002294097.1 209920013 7001207 2924342..2925622 1 NC_011415.1 stationary phase inducible protein CsiE 2925622 7001207 ECSE_2822 Escherichia coli SE11 stationary phase inducible protein CsiE YP_002294097.1 2924342 D 409438 CDS YP_002294098.1 209920014 7001208 complement(2925614..2926753) 1 NC_011415.1 putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 2926753 7001208 ECSE_2823 Escherichia coli SE11 putative 3-phenylpropionic acid transporter YP_002294098.1 2925614 R 409438 CDS YP_002294099.1 209920015 7001209 complement(2926913..2927803) 1 NC_011415.1 activator of 3-phenylpropionic acid catabolism; DNA-binding transcriptional regulator HcaR 2927803 7001209 ECSE_2824 Escherichia coli SE11 DNA-binding transcriptional regulator HcaR YP_002294099.1 2926913 R 409438 CDS YP_002294100.1 209920016 7001210 2927939..2929300 1 NC_011415.1 3-phenylpropionate dioxygenase alpha subunit 2929300 7001210 ECSE_2825 Escherichia coli SE11 3-phenylpropionate dioxygenase alpha subunit YP_002294100.1 2927939 D 409438 CDS YP_002294101.1 209920017 7001211 2929297..2929815 1 NC_011415.1 3-phenylpropionate dioxygenase subunit beta 2929815 7001211 ECSE_2826 Escherichia coli SE11 3-phenylpropionate dioxygenase subunit beta YP_002294101.1 2929297 D 409438 CDS YP_002294102.1 209920018 7001212 2929815..2930135 1 NC_011415.1 3-phenylpropionate dioxygenase ferredoxin subunit 2930135 7001212 ECSE_2827 Escherichia coli SE11 3-phenylpropionate dioxygenase ferredoxin subunit YP_002294102.1 2929815 D 409438 CDS YP_002294103.1 209920019 7001213 2930132..2930944 1 NC_011415.1 Converts cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol) into 3-(2,3-dihydroxylphenyl)propionate; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2930944 7001213 ECSE_2828 Escherichia coli SE11 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase YP_002294103.1 2930132 D 409438 CDS YP_002294104.1 209920020 7001214 2930954..2932156 1 NC_011415.1 phenylpropionate dioxygenase ferredoxin reductase subunit 2932156 7001214 ECSE_2829 Escherichia coli SE11 phenylpropionate dioxygenase ferredoxin reductase subunit YP_002294104.1 2930954 D 409438 CDS YP_002294105.1 209920021 7001215 2932253..2932675 1 NC_011415.1 hypothetical protein 2932675 7001215 ECSE_2830 Escherichia coli SE11 hypothetical protein YP_002294105.1 2932253 D 409438 CDS YP_002294106.1 209920022 7001216 complement(2932723..2933595) 1 NC_011415.1 hypothetical protein 2933595 7001216 ECSE_2831 Escherichia coli SE11 hypothetical protein YP_002294106.1 2932723 R 409438 CDS YP_002294107.1 209920023 7001217 complement(2933607..2934701) 1 NC_011415.1 putative oxidoreductase 2934701 7001217 ECSE_2832 Escherichia coli SE11 putative oxidoreductase YP_002294107.1 2933607 R 409438 CDS YP_002294108.1 209920024 7001218 complement(2934734..2935732) 1 NC_011415.1 putative ABC transporter permease 2935732 7001218 ECSE_2833 Escherichia coli SE11 putative ABC transporter permease YP_002294108.1 2934734 R 409438 CDS YP_002294109.1 209920025 7001219 complement(2935757..2937268) 1 NC_011415.1 putative ABC transporter ATP-binding protein 2937268 7001219 ECSE_2834 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002294109.1 2935757 R 409438 CDS YP_002294110.1 209920026 7001220 complement(2937291..2938274) 1 NC_011415.1 putative transcriptional regulator 2938274 7001220 ECSE_2835 Escherichia coli SE11 putative transcriptional regulator YP_002294110.1 2937291 R 409438 CDS YP_002294111.1 209920027 7001221 complement(2938371..2941745) 1 NC_011415.1 hypothetical protein 2941745 7001221 ECSE_2836 Escherichia coli SE11 hypothetical protein YP_002294111.1 2938371 R 409438 CDS YP_002294112.1 209920028 7001222 2941770..2942963 1 NC_011415.1 putative transcriptional regulator 2942963 7001222 ECSE_2837 Escherichia coli SE11 putative transcriptional regulator YP_002294112.1 2941770 D 409438 CDS YP_002294113.1 209920029 7001223 complement(2943036..2944289) 1 NC_011415.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2944289 glyA 7001223 glyA Escherichia coli SE11 serine hydroxymethyltransferase YP_002294113.1 2943036 R 409438 CDS YP_002294114.1 209920030 7001224 2944393..2944569 1 NC_011415.1 hypothetical protein 2944569 7001224 ECSE_2839 Escherichia coli SE11 hypothetical protein YP_002294114.1 2944393 D 409438 CDS YP_002294115.1 209920031 7001225 2944618..2945808 1 NC_011415.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2945808 7001225 ECSE_2840 Escherichia coli SE11 nitric oxide dioxygenase YP_002294115.1 2944618 D 409438 CDS YP_002294116.1 209920032 7001226 complement(2945853..2946191) 1 NC_011415.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; nitrogen regulatory protein P-II 1 2946191 7001226 ECSE_2841 Escherichia coli SE11 nitrogen regulatory protein P-II 1 YP_002294116.1 2945853 R 409438 CDS YP_002294117.1 209920033 7001227 complement(2946252..2947586) 1 NC_011415.1 two-component response regulator 2947586 7001227 ECSE_2842 Escherichia coli SE11 two-component response regulator YP_002294117.1 2946252 R 409438 CDS YP_002294118.1 209920034 7001228 complement(2947576..2948289) 1 NC_011415.1 hypothetical protein 2948289 7001228 ECSE_2843 Escherichia coli SE11 hypothetical protein YP_002294118.1 2947576 R 409438 CDS YP_002294119.1 209920035 7001229 complement(2948453..2949880) 1 NC_011415.1 two-component sensor kinase 2949880 7001229 ECSE_2844 Escherichia coli SE11 two-component sensor kinase YP_002294119.1 2948453 R 409438 CDS YP_002294120.1 209920036 7001230 complement(2950456..2954343) 1 NC_011415.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 2954343 7001230 ECSE_2845 Escherichia coli SE11 phosphoribosylformylglycinamidine synthase YP_002294120.1 2950456 R 409438 CDS YP_002294121.1 209920037 7001231 2954741..2956159 1 NC_011415.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2956159 7001231 ECSE_2846 Escherichia coli SE11 putative transglycosylase YP_002294121.1 2954741 D 409438 CDS YP_002294122.1 209920038 7001232 complement(2956156..2956692) 1 NC_011415.1 tRNA-specific adenosine deaminase 2956692 7001232 ECSE_2847 Escherichia coli SE11 tRNA-specific adenosine deaminase YP_002294122.1 2956156 R 409438 CDS YP_002294123.1 209920039 7001233 complement(2956717..2957352) 1 NC_011415.1 hypothetical protein 2957352 7001233 ECSE_2848 Escherichia coli SE11 hypothetical protein YP_002294123.1 2956717 R 409438 CDS YP_002294124.1 209920040 7001234 2957561..2958409 1 NC_011415.1 putative DNA-binding transcriptional regulator 2958409 7001234 ECSE_2849 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002294124.1 2957561 D 409438 CDS YP_002294125.1 209920041 7001235 2958465..2958725 1 NC_011415.1 hypothetical protein 2958725 7001235 ECSE_2850 Escherichia coli SE11 hypothetical protein YP_002294125.1 2958465 D 409438 CDS YP_002294126.1 209920042 7001236 complement(2959419..2959799) 1 NC_011415.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2959799 acpS 7001236 acpS Escherichia coli SE11 4'-phosphopantetheinyl transferase YP_002294126.1 2959419 R 409438 CDS YP_002294127.1 209920043 7001237 complement(2959799..2960530) 1 NC_011415.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2960530 7001237 ECSE_2852 Escherichia coli SE11 pyridoxine 5'-phosphate synthase YP_002294127.1 2959799 R 409438 CDS YP_002294128.1 209920044 7001238 complement(2960542..2961270) 1 NC_011415.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2961270 recO 7001238 recO Escherichia coli SE11 DNA repair protein RecO YP_002294128.1 2960542 R 409438 CDS YP_002294129.1 209920045 7001239 complement(2961282..2962187) 1 NC_011415.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2962187 era 7001239 era Escherichia coli SE11 GTP-binding protein Era YP_002294129.1 2961282 R 409438 CDS YP_002294130.1 209920046 7001240 complement(2962184..2962864) 1 NC_011415.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2962864 rnc 7001240 rnc Escherichia coli SE11 ribonuclease III YP_002294130.1 2962184 R 409438 CDS YP_002294131.1 209920047 7001241 complement(2963137..2964111) 1 NC_011415.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 2964111 7001241 ECSE_2856 Escherichia coli SE11 signal peptidase I YP_002294131.1 2963137 R 409438 CDS YP_002294132.1 209920048 7001242 complement(2964127..2965926) 1 NC_011415.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2965926 7001242 ECSE_2857 Escherichia coli SE11 GTP-binding protein LepA YP_002294132.1 2964127 R 409438 CDS YP_002294133.1 209920049 7001243 complement(2966124..2966603) 1 NC_011415.1 involved in the reduction of the SoxR iron-sulfur cluster; SoxR reducing system protein RseC 2966603 7001243 ECSE_2858 Escherichia coli SE11 SoxR reducing system protein RseC YP_002294133.1 2966124 R 409438 CDS YP_002294134.1 209920050 7001244 complement(2966600..2967556) 1 NC_011415.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 2967556 rseB 7001244 rseB Escherichia coli SE11 periplasmic negative regulator of sigmaE YP_002294134.1 2966600 R 409438 CDS YP_002294135.1 209920051 7001245 complement(2967556..2968206) 1 NC_011415.1 anti-RNA polymerase sigma factor SigE 2968206 7001245 ECSE_2860 Escherichia coli SE11 anti-RNA polymerase sigma factor SigE YP_002294135.1 2967556 R 409438 CDS YP_002294136.1 209920052 7001246 complement(2968239..2968814) 1 NC_011415.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2968814 7001246 ECSE_2861 Escherichia coli SE11 RNA polymerase sigma factor RpoE YP_002294136.1 2968239 R 409438 CDS YP_002294137.1 209920053 7001247 2969222..2970844 1 NC_011415.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2970844 7001247 ECSE_2862 Escherichia coli SE11 L-aspartate oxidase YP_002294137.1 2969222 D 409438 CDS YP_002294138.1 209920054 7001248 complement(2970829..2971566) 1 NC_011415.1 hypothetical protein 2971566 7001248 ECSE_2863 Escherichia coli SE11 hypothetical protein YP_002294138.1 2970829 R 409438 CDS YP_002294139.1 209920055 7001249 2971698..2973032 1 NC_011415.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 2973032 7001249 ECSE_2864 Escherichia coli SE11 ATP-dependent RNA helicase SrmB YP_002294139.1 2971698 D 409438 CDS YP_002294140.1 209920056 7001250 2973038..2973190 1 NC_011415.1 hypothetical protein 2973190 7001250 ECSE_2865 Escherichia coli SE11 hypothetical protein YP_002294140.1 2973038 D 409438 CDS YP_002294141.1 209920057 7001251 complement(2973241..2974122) 1 NC_011415.1 putative transcriptional regulator 2974122 7001251 ECSE_2866 Escherichia coli SE11 putative transcriptional regulator YP_002294141.1 2973241 R 409438 CDS YP_002294142.1 209920058 7001252 2974225..2974812 1 NC_011415.1 neutral amino-acid efflux protein 2974812 7001252 ECSE_2867 Escherichia coli SE11 neutral amino-acid efflux protein YP_002294142.1 2974225 D 409438 CDS YP_002294143.1 209920059 7001253 complement(2974868..2975251) 1 NC_011415.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 2975251 7001253 ECSE_2868 Escherichia coli SE11 autonomous glycyl radical cofactor GrcA YP_002294143.1 2974868 R 409438 CDS YP_002294144.1 209920060 7001254 2975556..2976245 1 NC_011415.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2976245 7001254 ECSE_2869 Escherichia coli SE11 uracil-DNA glycosylase YP_002294144.1 2975556 D 409438 CDS YP_002294145.1 209920061 7001255 complement(2976293..2977330) 1 NC_011415.1 putative methyltransferase 2977330 7001255 ECSE_2870 Escherichia coli SE11 putative methyltransferase YP_002294145.1 2976293 R 409438 CDS YP_002294146.1 209920062 7001256 2977537..2977956 1 NC_011415.1 thioredoxin 2 2977956 7001256 ECSE_2871 Escherichia coli SE11 thioredoxin 2 YP_002294146.1 2977537 D 409438 CDS YP_002294147.1 209920063 7001257 2978025..2978723 1 NC_011415.1 hypothetical protein 2978723 7001257 ECSE_2872 Escherichia coli SE11 hypothetical protein YP_002294147.1 2978025 D 409438 CDS YP_002294148.1 209920064 7001258 2978755..2981415 1 NC_011415.1 hypothetical protein 2981415 7001258 ECSE_2873 Escherichia coli SE11 hypothetical protein YP_002294148.1 2978755 D 409438 CDS YP_002294149.1 209920065 7001259 2981526..2982884 1 NC_011415.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 2982884 pssA 7001259 pssA Escherichia coli SE11 phosphatidylserine synthase YP_002294149.1 2981526 D 409438 CDS YP_002294150.1 209920066 7001260 2982930..2983253 1 NC_011415.1 hypothetical protein 2983253 7001260 ECSE_2875 Escherichia coli SE11 hypothetical protein YP_002294150.1 2982930 D 409438 CDS YP_002294151.1 209920067 7001261 complement(2983250..2984548) 1 NC_011415.1 alpha-ketoglutarate transporter 2984548 7001261 ECSE_2876 Escherichia coli SE11 alpha-ketoglutarate transporter YP_002294151.1 2983250 R 409438 CDS YP_002294152.1 209920068 7000073 2990227..2990361 1 NC_011415.1 hypothetical protein 2990361 7000073 ECSE_2877 Escherichia coli SE11 hypothetical protein YP_002294152.1 2990227 D 409438 CDS YP_002294153.1 209920069 7001263 complement(2990403..2992976) 1 NC_011415.1 protein disaggregation chaperone 2992976 7001263 ECSE_2878 Escherichia coli SE11 protein disaggregation chaperone YP_002294153.1 2990403 R 409438 CDS YP_002294154.1 209920070 7001264 complement(2993106..2993837) 1 NC_011415.1 hypothetical protein 2993837 7001264 ECSE_2879 Escherichia coli SE11 hypothetical protein YP_002294154.1 2993106 R 409438 CDS YP_002294155.1 209920071 7001265 complement(2993834..2994814) 1 NC_011415.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 2994814 rluD 7001265 rluD Escherichia coli SE11 23S rRNA pseudouridine synthase D YP_002294155.1 2993834 R 409438 CDS YP_002294156.1 209920072 7001266 2994949..2995686 1 NC_011415.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 2995686 7001266 ECSE_2881 Escherichia coli SE11 outer membrane protein assembly complex subunit YfiO YP_002294156.1 2994949 D 409438 CDS YP_002294157.1 209920073 7001267 2995957..2996298 1 NC_011415.1 associated with 30S ribosomal subunit; interferes with translation elongation; translation inhibitor protein RaiA 2996298 7001267 ECSE_2882 Escherichia coli SE11 translation inhibitor protein RaiA YP_002294157.1 2995957 D 409438 CDS YP_002294158.1 209920074 7001268 2996548..2997708 1 NC_011415.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; bifunctional chorismate mutase/prephenate dehydratase 2997708 pheA 7001268 pheA Escherichia coli SE11 bifunctional chorismate mutase/prephenate dehydratase YP_002294158.1 2996548 D 409438 CDS YP_002294159.1 209920075 7001269 complement(2997751..2998872) 1 NC_011415.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 2998872 tyrA 7001269 tyrA Escherichia coli SE11 bifunctional chorismate mutase/prephenate dehydrogenase YP_002294159.1 2997751 R 409438 CDS YP_002294160.1 209920076 7001270 complement(2998883..2999953) 1 NC_011415.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2999953 7001270 ECSE_2885 Escherichia coli SE11 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002294160.1 2998883 R 409438 CDS YP_002294161.1 209920077 7001271 3000163..3000483 1 NC_011415.1 hypothetical protein 3000483 7001271 ECSE_2886 Escherichia coli SE11 hypothetical protein YP_002294161.1 3000163 D 409438 CDS YP_002294162.1 209920078 7001272 3000706..3001224 1 NC_011415.1 hypothetical protein 3001224 7001272 ECSE_2887 Escherichia coli SE11 hypothetical protein YP_002294162.1 3000706 D 409438 CDS YP_002294163.1 209920079 7001273 3001214..3002440 1 NC_011415.1 hypothetical protein 3002440 7001273 ECSE_2888 Escherichia coli SE11 hypothetical protein YP_002294163.1 3001214 D 409438 CDS YP_002294164.1 209920080 7001274 3002456..3002938 1 NC_011415.1 putative outer membrane lipoprotein 3002938 7001274 ECSE_2889 Escherichia coli SE11 putative outer membrane lipoprotein YP_002294164.1 3002456 D 409438 CDS YP_002294165.1 209920081 7001275 complement(3003015..3003362) 1 NC_011415.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3003362 rplS 7001275 rplS Escherichia coli SE11 50S ribosomal protein L19 YP_002294165.1 3003015 R 409438 CDS YP_002294166.1 209920082 7001276 complement(3003404..3004171) 1 NC_011415.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3004171 trmD 7001276 trmD Escherichia coli SE11 tRNA (guanine-N(1)-)-methyltransferase YP_002294166.1 3003404 R 409438 CDS YP_002294167.1 209920083 7001277 complement(3004202..3004750) 1 NC_011415.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3004750 rimM 7001277 rimM Escherichia coli SE11 16S rRNA-processing protein RimM YP_002294167.1 3004202 R 409438 CDS YP_002294168.1 209920084 7001278 complement(3004769..3005017) 1 NC_011415.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3005017 rpsP 7001278 rpsP Escherichia coli SE11 30S ribosomal protein S16 YP_002294168.1 3004769 R 409438 CDS YP_002294169.1 209920085 7001279 complement(3005266..3006627) 1 NC_011415.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins; signal recognition particle protein 3006627 7001279 ECSE_2894 Escherichia coli SE11 signal recognition particle protein YP_002294169.1 3005266 R 409438 CDS YP_002294170.1 209920086 7001280 3006794..3007585 1 NC_011415.1 hypothetical protein 3007585 7001280 ECSE_2895 Escherichia coli SE11 hypothetical protein YP_002294170.1 3006794 D 409438 CDS YP_002294171.1 209920087 7001281 3007696..3008892 1 NC_011415.1 hypothetical protein 3008892 7001281 ECSE_2896 Escherichia coli SE11 hypothetical protein YP_002294171.1 3007696 D 409438 CDS YP_002294172.1 209920088 7001282 complement(3008947..3009540) 1 NC_011415.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3009540 7001282 ECSE_2897 Escherichia coli SE11 heat shock protein GrpE YP_002294172.1 3008947 R 409438 CDS YP_002294173.1 209920089 7001283 3009663..3010541 1 NC_011415.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3010541 ppnK 7001283 ppnK Escherichia coli SE11 inorganic polyphosphate/ATP-NAD kinase YP_002294173.1 3009663 D 409438 CDS YP_002294174.1 209920090 7001284 3010627..3012288 1 NC_011415.1 recombination and repair protein 3012288 7001284 ECSE_2899 Escherichia coli SE11 recombination and repair protein YP_002294174.1 3010627 D 409438 CDS YP_002294175.1 209920091 7001285 3012437..3012778 1 NC_011415.1 hypothetical protein 3012778 7001285 ECSE_2900 Escherichia coli SE11 hypothetical protein YP_002294175.1 3012437 D 409438 CDS YP_002294176.1 209920092 7001286 complement(3012840..3013130) 1 NC_011415.1 hypothetical protein 3013130 7001286 ECSE_2901 Escherichia coli SE11 hypothetical protein YP_002294176.1 3012840 R 409438 CDS YP_002294177.1 209920093 7001287 complement(3013120..3013557) 1 NC_011415.1 hypothetical protein 3013557 7001287 ECSE_2902 Escherichia coli SE11 hypothetical protein YP_002294177.1 3013120 R 409438 CDS YP_002294178.1 209920094 7001288 3013728..3014210 1 NC_011415.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3014210 smpB 7001288 smpB Escherichia coli SE11 SsrA-binding protein YP_002294178.1 3013728 D 409438 CDS YP_002294179.1 209920095 7001289 3014953..3016182 1 NC_011415.1 phage integrase 3016182 7001289 ECSE_2904 Escherichia coli SE11 phage integrase YP_002294179.1 3014953 D 409438 CDS YP_002294180.1 209920096 7001290 3016221..3016637 1 NC_011415.1 hypothetical protein 3016637 7001290 ECSE_2905 Escherichia coli SE11 hypothetical protein YP_002294180.1 3016221 D 409438 CDS YP_002294181.1 209920097 7001291 complement(3016861..3018459) 1 NC_011415.1 hypothetical protein 3018459 7001291 ECSE_2906 Escherichia coli SE11 hypothetical protein YP_002294181.1 3016861 R 409438 CDS YP_002294182.1 209920098 7001292 complement(3018461..3020179) 1 NC_011415.1 histidin kinase-like protein 3020179 7001292 ECSE_2907 Escherichia coli SE11 histidin kinase-like protein YP_002294182.1 3018461 R 409438 CDS YP_002294183.1 209920099 7001293 complement(3020331..3021197) 1 NC_011415.1 transposase 3021197 7001293 ECSE_2908 Escherichia coli SE11 transposase YP_002294183.1 3020331 R 409438 CDS YP_002294184.1 209920100 7001294 complement(3021194..3021493) 1 NC_011415.1 transposase 3021493 7001294 ECSE_2909 Escherichia coli SE11 transposase YP_002294184.1 3021194 R 409438 CDS YP_002294185.1 209920101 7001295 3021623..3022255 1 NC_011415.1 hypothetical protein 3022255 7001295 ECSE_2910 Escherichia coli SE11 hypothetical protein YP_002294185.1 3021623 D 409438 CDS YP_002294186.1 209920102 7001296 3022394..3022666 1 NC_011415.1 hypothetical protein 3022666 7001296 ECSE_2911 Escherichia coli SE11 hypothetical protein YP_002294186.1 3022394 D 409438 CDS YP_002294187.1 209920103 7001297 3022897..3023979 1 NC_011415.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution; hypothetical protein 3023979 7001297 ECSE_2912 Escherichia coli SE11 hypothetical protein YP_002294187.1 3022897 D 409438 CDS YP_002294188.1 209920104 7001298 3023999..3025267 1 NC_011415.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate; hydroxyglutarate oxidase 3025267 7001298 ECSE_2913 Escherichia coli SE11 hydroxyglutarate oxidase YP_002294188.1 3023999 D 409438 CDS YP_002294189.1 209920105 7001299 3025290..3026738 1 NC_011415.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 3026738 gabD 7001299 gabD Escherichia coli SE11 succinate-semialdehyde dehydrogenase I YP_002294189.1 3025290 D 409438 CDS YP_002294190.1 209920106 7001300 3026752..3028032 1 NC_011415.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 3028032 7001300 ECSE_2915 Escherichia coli SE11 4-aminobutyrate aminotransferase YP_002294190.1 3026752 D 409438 CDS YP_002294191.1 209920107 7001301 3028270..3029670 1 NC_011415.1 gamma-aminobutyrate transporter 3029670 7001301 ECSE_2916 Escherichia coli SE11 gamma-aminobutyrate transporter YP_002294191.1 3028270 D 409438 CDS YP_002294192.1 209920108 7001302 3029691..3030353 1 NC_011415.1 regulator of gab gene expression; DNA-binding transcriptional regulator CsiR 3030353 7001302 ECSE_2917 Escherichia coli SE11 DNA-binding transcriptional regulator CsiR YP_002294192.1 3029691 D 409438 CDS YP_002294193.1 209920109 7001303 complement(3030354..3030803) 1 NC_011415.1 LysM domain/BON superfamily protein 3030803 7001303 ECSE_2918 Escherichia coli SE11 LysM domain/BON superfamily protein YP_002294193.1 3030354 R 409438 CDS YP_002294194.1 209920110 7001304 complement(3030887..3031045) 1 NC_011415.1 hypothetical protein 3031045 7001304 ECSE_2919 Escherichia coli SE11 hypothetical protein YP_002294194.1 3030887 R 409438 CDS YP_002294195.1 209920111 7001305 3031228..3031527 1 NC_011415.1 hypothetical protein 3031527 7001305 ECSE_2920 Escherichia coli SE11 hypothetical protein YP_002294195.1 3031228 D 409438 CDS YP_002294196.1 209920112 7001306 3031537..3032061 1 NC_011415.1 hypothetical protein 3032061 7001306 ECSE_2921 Escherichia coli SE11 hypothetical protein YP_002294196.1 3031537 D 409438 CDS YP_002294197.1 209920113 7001307 complement(3032108..3032512) 1 NC_011415.1 DNA binding protein, nucleoid-associated 3032512 7001307 ECSE_2922 Escherichia coli SE11 DNA binding protein, nucleoid-associated YP_002294197.1 3032108 R 409438 CDS YP_002294198.1 209920114 7001308 3033180..3033629 1 NC_011415.1 hypothetical protein 3033629 7001308 ECSE_2923 Escherichia coli SE11 hypothetical protein YP_002294198.1 3033180 D 409438 CDS YP_002294199.1 209920115 7001309 complement(3033666..3034010) 1 NC_011415.1 hypothetical protein 3034010 7001309 ECSE_2924 Escherichia coli SE11 hypothetical protein YP_002294199.1 3033666 R 409438 CDS YP_002294200.1 209920116 7001310 3034150..3034491 1 NC_011415.1 hypothetical protein 3034491 7001310 ECSE_2925 Escherichia coli SE11 hypothetical protein YP_002294200.1 3034150 D 409438 CDS YP_002294201.1 209920117 7001311 3034739..3034984 1 NC_011415.1 glutaredoxin-like protein 3034984 7001311 ECSE_2926 Escherichia coli SE11 glutaredoxin-like protein YP_002294201.1 3034739 D 409438 CDS YP_002294202.1 209920118 7001312 3034981..3035391 1 NC_011415.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 3035391 nrdI 7001312 nrdI Escherichia coli SE11 ribonucleotide reductase stimulatory protein YP_002294202.1 3034981 D 409438 CDS YP_002294203.1 209920119 7001313 3035364..3037508 1 NC_011415.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3037508 7001313 ECSE_2928 Escherichia coli SE11 ribonucleotide-diphosphate reductase subunit alpha YP_002294203.1 3035364 D 409438 CDS YP_002294204.1 209920120 7001314 3037518..3038477 1 NC_011415.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 3038477 nrdF 7001314 nrdF Escherichia coli SE11 ribonucleotide-diphosphate reductase subunit beta YP_002294204.1 3037518 D 409438 CDS YP_002294205.1 209920121 7001315 3038832..3040034 1 NC_011415.1 with ProWX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter ATP-binding subunit 3040034 7001315 ECSE_2930 Escherichia coli SE11 glycine betaine transporter ATP-binding subunit YP_002294205.1 3038832 D 409438 CDS YP_002294206.1 209920122 7001316 3040027..3041091 1 NC_011415.1 with ProVX is involved in the high-affinity uptake of glycine betaine; glycine betaine transporter membrane protein 3041091 7001316 ECSE_2931 Escherichia coli SE11 glycine betaine transporter membrane protein YP_002294206.1 3040027 D 409438 CDS YP_002294207.1 209920123 7001317 3041148..3042140 1 NC_011415.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 3042140 proX 7001317 proX Escherichia coli SE11 glycine betaine transporter periplasmic subunit YP_002294207.1 3041148 D 409438 CDS YP_002294208.1 209920124 7001318 complement(3042172..3042339) 1 NC_011415.1 hypothetical protein 3042339 7001318 ECSE_2933 Escherichia coli SE11 hypothetical protein YP_002294208.1 3042172 R 409438 CDS YP_002294209.1 209920125 7001319 3042432..3043616 1 NC_011415.1 hypothetical protein 3043616 7001319 ECSE_2934 Escherichia coli SE11 hypothetical protein YP_002294209.1 3042432 D 409438 CDS YP_002294210.1 209920126 7001320 3043740..3044477 1 NC_011415.1 hypothetical protein 3044477 7001320 ECSE_2935 Escherichia coli SE11 hypothetical protein YP_002294210.1 3043740 D 409438 CDS YP_002294211.1 209920127 7001321 3044467..3044802 1 NC_011415.1 hypothetical protein 3044802 7001321 ECSE_2936 Escherichia coli SE11 hypothetical protein YP_002294211.1 3044467 D 409438 CDS YP_002294212.1 209920128 7001322 3044893..3045423 1 NC_011415.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB; transcriptional repressor MprA 3045423 7001322 ECSE_2937 Escherichia coli SE11 transcriptional repressor MprA YP_002294212.1 3044893 D 409438 CDS YP_002294213.1 209920129 7001323 3045550..3046722 1 NC_011415.1 multidrug resistance protein 3046722 7001323 ECSE_2938 Escherichia coli SE11 multidrug resistance protein YP_002294213.1 3045550 D 409438 CDS YP_002294214.1 209920130 7001324 3046739..3048277 1 NC_011415.1 multidrug resistance protein 3048277 7001324 ECSE_2939 Escherichia coli SE11 multidrug resistance protein YP_002294214.1 3046739 D 409438 CDS YP_002294215.1 209920131 7001325 complement(3048341..3048856) 1 NC_011415.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 3048856 7001325 ECSE_2940 Escherichia coli SE11 S-ribosylhomocysteinase YP_002294215.1 3048341 R 409438 CDS YP_002294216.1 209920132 7001326 complement(3049006..3050562) 1 NC_011415.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 3050562 7001326 ECSE_2941 Escherichia coli SE11 glutamate--cysteine ligase YP_002294216.1 3049006 R 409438 CDS YP_002294217.1 209920133 7001327 complement(3050635..3051063) 1 NC_011415.1 hypothetical protein 3051063 7001327 ECSE_2942 Escherichia coli SE11 hypothetical protein YP_002294217.1 3050635 R 409438 CDS YP_002294218.1 209920134 7001328 complement(3051060..3051626) 1 NC_011415.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent; fructose-1-phosphatase 3051626 7001328 ECSE_2943 Escherichia coli SE11 fructose-1-phosphatase YP_002294218.1 3051060 R 409438 CDS YP_002294219.1 209920135 7003132 complement(3053219..3053404) 1 NC_011415.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3053404 7003132 ECSE_2944 Escherichia coli SE11 carbon storage regulator YP_002294219.1 3053219 R 409438 CDS YP_002294220.1 209920136 7001330 complement(3053639..3056269) 1 NC_011415.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3056269 alaS 7001330 alaS Escherichia coli SE11 alanyl-tRNA synthetase YP_002294220.1 3053639 R 409438 CDS YP_002294221.1 209920137 7001331 complement(3056397..3056897) 1 NC_011415.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 3056897 recX 7001331 recX Escherichia coli SE11 recombination regulator RecX YP_002294221.1 3056397 R 409438 CDS YP_002294222.1 209920138 7001332 complement(3057140..3058201) 1 NC_011415.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 3058201 recA 7001332 recA Escherichia coli SE11 recombinase A YP_002294222.1 3057140 R 409438 CDS YP_002294223.1 209920139 7001333 complement(3058281..3058778) 1 NC_011415.1 competence damage-inducible protein A 3058778 7001333 ECSE_2948 Escherichia coli SE11 competence damage-inducible protein A YP_002294223.1 3058281 R 409438 CDS YP_002294224.1 209920140 7001334 complement(3058923..3060008) 1 NC_011415.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan; murein hydrolase B 3060008 7001334 ECSE_2949 Escherichia coli SE11 murein hydrolase B YP_002294224.1 3058923 R 409438 CDS YP_002294225.1 209920141 7001335 3060264..3060827 1 NC_011415.1 PTS system glucitol/sorbitol-specific IIC component 3060827 7001335 ECSE_2950 Escherichia coli SE11 PTS system glucitol/sorbitol-specific IIC component YP_002294225.1 3060264 D 409438 CDS YP_002294226.1 209920142 7001336 3060824..3061783 1 NC_011415.1 PTS system glucitol/sorbitol-specific IIB component 3061783 7001336 ECSE_2951 Escherichia coli SE11 PTS system glucitol/sorbitol-specific IIB component YP_002294226.1 3060824 D 409438 CDS YP_002294227.1 209920143 7001337 3061794..3062165 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 3062165 7001337 ECSE_2952 Escherichia coli SE11 PTS system glucitol/sorbitol-specific transporter subunit IIA YP_002294227.1 3061794 D 409438 CDS YP_002294228.1 209920144 7001338 3062169..3062948 1 NC_011415.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 3062948 7001338 ECSE_2953 Escherichia coli SE11 sorbitol-6-phosphate dehydrogenase YP_002294228.1 3062169 D 409438 CDS YP_002294229.1 209920145 7001339 3063053..3063412 1 NC_011415.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 3063412 7001339 ECSE_2954 Escherichia coli SE11 DNA-binding transcriptional activator GutM YP_002294229.1 3063053 D 409438 CDS YP_002294230.1 209920146 7001340 3063479..3064252 1 NC_011415.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 3064252 srlR 7001340 srlR Escherichia coli SE11 DNA-binding transcriptional repressor SrlR YP_002294230.1 3063479 D 409438 CDS YP_002294231.1 209920147 7001341 3064284..3065210 1 NC_011415.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate; D-arabinose 5-phosphate isomerase 3065210 gutQ 7001341 gutQ Escherichia coli SE11 D-arabinose 5-phosphate isomerase YP_002294231.1 3064284 D 409438 CDS YP_002294232.1 209920148 7001342 complement(3065207..3066721) 1 NC_011415.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 3066721 7001342 ECSE_2957 Escherichia coli SE11 anaerobic nitric oxide reductase transcription regulator YP_002294232.1 3065207 R 409438 CDS YP_002294233.1 209920149 7001343 3066908..3068347 1 NC_011415.1 detoxifies nitric oxide using NADH; anaerobic nitric oxide reductase flavorubredoxin 3068347 7001343 ECSE_2958 Escherichia coli SE11 anaerobic nitric oxide reductase flavorubredoxin YP_002294233.1 3066908 D 409438 CDS YP_002294234.1 209920150 7001344 3068344..3069477 1 NC_011415.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase; nitric oxide reductase 3069477 7001344 ECSE_2959 Escherichia coli SE11 nitric oxide reductase YP_002294234.1 3068344 D 409438 CDS YP_002294235.1 209920151 7001345 complement(3069605..3071857) 1 NC_011415.1 transcriptional regulator 3071857 7001345 ECSE_2960 Escherichia coli SE11 transcriptional regulator YP_002294235.1 3069605 R 409438 CDS YP_002294236.1 209920152 7001346 complement(3072010..3072537) 1 NC_011415.1 involved in electron transport from formate to hydrogen; electron transport protein HydN 3072537 7001346 ECSE_2961 Escherichia coli SE11 electron transport protein HydN YP_002294236.1 3072010 R 409438 CDS YP_002294237.1 209920153 7001347 complement(3072686..3073762) 1 NC_011415.1 transcriptional regulator 3073762 7001347 ECSE_2962 Escherichia coli SE11 transcriptional regulator YP_002294237.1 3072686 R 409438 CDS YP_002294238.1 209920154 7001348 3073956..3075413 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC 3075413 7001348 ECSE_2963 Escherichia coli SE11 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC YP_002294238.1 3073956 D 409438 CDS YP_002294239.1 209920155 7001349 3075422..3076846 1 NC_011415.1 cryptic 6-phospho-beta-glucosidase 3076846 7001349 ECSE_2964 Escherichia coli SE11 cryptic 6-phospho-beta-glucosidase YP_002294239.1 3075422 D 409438 CDS YP_002294240.1 209920156 7001350 complement(3077005..3077475) 1 NC_011415.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 3077475 hycI 7001350 hycI Escherichia coli SE11 hydrogenase 3 maturation protease YP_002294240.1 3077005 R 409438 CDS YP_002294241.1 209920157 7001351 complement(3077468..3077878) 1 NC_011415.1 formate hydrogenlyase maturation protein 3077878 7001351 ECSE_2966 Escherichia coli SE11 formate hydrogenlyase maturation protein YP_002294241.1 3077468 R 409438 CDS YP_002294242.1 209920158 7001352 complement(3077875..3078642) 1 NC_011415.1 formate hydrogenlyase subunit 3078642 7001352 ECSE_2967 Escherichia coli SE11 formate hydrogenlyase subunit YP_002294242.1 3077875 R 409438 CDS YP_002294243.1 209920159 7001353 complement(3078642..3079184) 1 NC_011415.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate; formate hydrogenlyase complex iron-sulfur subunit 3079184 7001353 ECSE_2968 Escherichia coli SE11 formate hydrogenlyase complex iron-sulfur subunit YP_002294243.1 3078642 R 409438 CDS YP_002294244.1 209920160 7001354 complement(3079194..3080903) 1 NC_011415.1 formate hydrogenlyase subunit 3080903 7001354 ECSE_2969 Escherichia coli SE11 formate hydrogenlyase subunit YP_002294244.1 3079194 R 409438 CDS YP_002294245.1 209920161 7001355 complement(3080921..3081844) 1 NC_011415.1 formate hydrogenlyase subunit 3081844 7001355 ECSE_2970 Escherichia coli SE11 formate hydrogenlyase subunit YP_002294245.1 3080921 R 409438 CDS YP_002294246.1 209920162 7001356 complement(3081847..3083673) 1 NC_011415.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3); formate hydrogenlyase subunit 3 3083673 7001356 ECSE_2971 Escherichia coli SE11 formate hydrogenlyase subunit 3 YP_002294246.1 3081847 R 409438 CDS YP_002294247.1 209920163 7001357 complement(3083670..3084281) 1 NC_011415.1 formate hydrogenlyase subunit 3084281 7001357 ECSE_2972 Escherichia coli SE11 formate hydrogenlyase subunit YP_002294247.1 3083670 R 409438 CDS YP_002294248.1 209920164 7001358 complement(3084406..3084867) 1 NC_011415.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon; formate hydrogenlyase regulatory protein HycA 3084867 7001358 ECSE_2973 Escherichia coli SE11 formate hydrogenlyase regulatory protein HycA YP_002294248.1 3084406 R 409438 CDS YP_002294249.1 209920165 7001359 3085079..3085429 1 NC_011415.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 3085429 hypA 7001359 hypA Escherichia coli SE11 hydrogenase nickel incorporation protein YP_002294249.1 3085079 D 409438 CDS YP_002294250.1 209920166 7001360 3085433..3086305 1 NC_011415.1 GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 3086305 7001360 ECSE_2975 Escherichia coli SE11 hydrogenase nickel incorporation protein HypB YP_002294250.1 3085433 D 409438 CDS YP_002294251.1 209920167 7001361 3086296..3086568 1 NC_011415.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase; hydrogenase assembly chaperone 3086568 7001361 ECSE_2976 Escherichia coli SE11 hydrogenase assembly chaperone YP_002294251.1 3086296 D 409438 CDS YP_002294252.1 209920168 7001362 3086568..3087689 1 NC_011415.1 hydrogenase isoenzyme 3087689 7001362 ECSE_2977 Escherichia coli SE11 hydrogenase isoenzyme YP_002294252.1 3086568 D 409438 CDS YP_002294253.1 209920169 7001363 3087728..3088696 1 NC_011415.1 hydrogenase isoenzyme 3088696 7001363 ECSE_2978 Escherichia coli SE11 hydrogenase isoenzyme YP_002294253.1 3087728 D 409438 CDS YP_002294254.1 209920170 7001364 3088770..3090848 1 NC_011415.1 formate hydrogenlyase transcriptional activator 3090848 7001364 ECSE_2979 Escherichia coli SE11 formate hydrogenlyase transcriptional activator YP_002294254.1 3088770 D 409438 CDS YP_002294255.1 209920171 7001365 complement(3090885..3091238) 1 NC_011415.1 hypothetical protein 3091238 7001365 ECSE_2980 Escherichia coli SE11 hypothetical protein YP_002294255.1 3090885 R 409438 CDS YP_002294256.1 209920172 7001366 3091525..3094086 1 NC_011415.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3094086 7001366 ECSE_2981 Escherichia coli SE11 DNA mismatch repair protein MutS YP_002294256.1 3091525 D 409438 CDS YP_002294257.1 209920173 7001367 3094192..3094848 1 NC_011415.1 serine/threonine-specific protein phosphatase 2 3094848 7001367 ECSE_2982 Escherichia coli SE11 serine/threonine-specific protein phosphatase 2 YP_002294257.1 3094192 D 409438 CDS YP_002294258.1 209920174 7001368 complement(3094899..3095666) 1 NC_011415.1 putative transcriptional regulator 3095666 7001368 ECSE_2983 Escherichia coli SE11 putative transcriptional regulator YP_002294258.1 3094899 R 409438 CDS YP_002294259.1 209920175 7001369 3095862..3096770 1 NC_011415.1 putative dehydrogenase 3096770 7001369 ECSE_2984 Escherichia coli SE11 putative dehydrogenase YP_002294259.1 3095862 D 409438 CDS YP_002294260.1 209920176 7001370 3096767..3098029 1 NC_011415.1 hypothetical protein 3098029 7001370 ECSE_2985 Escherichia coli SE11 hypothetical protein YP_002294260.1 3096767 D 409438 CDS YP_002294261.1 209920177 7001371 3098026..3098664 1 NC_011415.1 putative aldolase 3098664 7001371 ECSE_2986 Escherichia coli SE11 putative aldolase YP_002294261.1 3098026 D 409438 CDS YP_002294262.1 209920178 7001372 3098669..3099445 1 NC_011415.1 hypothetical protein 3099445 7001372 ECSE_2987 Escherichia coli SE11 hypothetical protein YP_002294262.1 3098669 D 409438 CDS YP_002294263.1 209920179 7001373 3099534..3100898 1 NC_011415.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; inner membrane permease YgbN 3100898 7001373 ECSE_2988 Escherichia coli SE11 inner membrane permease YgbN YP_002294263.1 3099534 D 409438 CDS YP_002294264.1 209920180 7001374 complement(3100937..3101173) 1 NC_011415.1 hypothetical protein 3101173 7001374 ECSE_2989 Escherichia coli SE11 hypothetical protein YP_002294264.1 3100937 R 409438 CDS YP_002294265.1 209920181 7001375 complement(3101184..3102611) 1 NC_011415.1 hypothetical protein 3102611 7001375 ECSE_2990 Escherichia coli SE11 hypothetical protein YP_002294265.1 3101184 R 409438 CDS YP_002294266.1 209920182 7001376 complement(3102611..3103204) 1 NC_011415.1 putative phenylacrylic acid decarboxylase 3103204 7001376 ECSE_2991 Escherichia coli SE11 putative phenylacrylic acid decarboxylase YP_002294266.1 3102611 R 409438 CDS YP_002294267.1 209920183 7001377 3103351..3103758 1 NC_011415.1 transcriptional regulator 3103758 7001377 ECSE_2992 Escherichia coli SE11 transcriptional regulator YP_002294267.1 3103351 D 409438 CDS YP_002294268.1 209920184 7001378 complement(3103879..3104871) 1 NC_011415.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3104871 7001378 ECSE_2993 Escherichia coli SE11 RNA polymerase sigma factor RpoS YP_002294268.1 3103879 R 409438 CDS YP_002294269.1 209920185 7001379 complement(3104934..3106073) 1 NC_011415.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus; lipoprotein NlpD 3106073 nlpD 7001379 nlpD Escherichia coli SE11 lipoprotein NlpD YP_002294269.1 3104934 R 409438 CDS YP_002294270.1 209920186 7001380 complement(3106213..3106839) 1 NC_011415.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3106839 pcm 7001380 pcm Escherichia coli SE11 protein-L-isoaspartate O-methyltransferase YP_002294270.1 3106213 R 409438 CDS YP_002294271.1 209920187 7001381 complement(3106833..3107594) 1 NC_011415.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3107594 surE 7001381 surE Escherichia coli SE11 stationary phase survival protein SurE YP_002294271.1 3106833 R 409438 CDS YP_002294272.1 209920188 7001382 complement(3107575..3108624) 1 NC_011415.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3108624 truD 7001382 truD Escherichia coli SE11 tRNA pseudouridine synthase D YP_002294272.1 3107575 R 409438 CDS YP_002294273.1 209920189 7001383 complement(3108621..3109100) 1 NC_011415.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3109100 ispF 7001383 ispF Escherichia coli SE11 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002294273.1 3108621 R 409438 CDS YP_002294274.1 209920190 7001384 complement(3109100..3109810) 1 NC_011415.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3109810 ispD 7001384 ispD Escherichia coli SE11 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002294274.1 3109100 R 409438 CDS YP_002294275.1 209920191 7001385 complement(3109829..3110140) 1 NC_011415.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 3110140 ftsB 7001385 ftsB Escherichia coli SE11 cell division protein FtsB YP_002294275.1 3109829 R 409438 CDS YP_002294276.1 209920192 7001386 complement(3110334..3110657) 1 NC_011415.1 hypothetical protein 3110657 7001386 ECSE_3001 Escherichia coli SE11 hypothetical protein YP_002294276.1 3110334 R 409438 CDS YP_002294277.1 209920193 7001387 complement(3110707..3111312) 1 NC_011415.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis; adenylylsulfate kinase 3111312 7001387 ECSE_3002 Escherichia coli SE11 adenylylsulfate kinase YP_002294277.1 3110707 R 409438 CDS YP_002294278.1 209920194 7001388 complement(3111312..3112739) 1 NC_011415.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase subunit 1 3112739 cysN 7001388 cysN Escherichia coli SE11 sulfate adenylyltransferase subunit 1 YP_002294278.1 3111312 R 409438 CDS YP_002294279.1 209920195 7001389 complement(3112741..3113649) 1 NC_011415.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3113649 7001389 ECSE_3004 Escherichia coli SE11 sulfate adenylyltransferase subunit 2 YP_002294279.1 3112741 R 409438 CDS YP_002294280.1 209920196 7001390 3113901..3114938 1 NC_011415.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3; alkaline phosphatase isozyme conversion aminopeptidase 3114938 7001390 ECSE_3005 Escherichia coli SE11 alkaline phosphatase isozyme conversion aminopeptidase YP_002294280.1 3113901 D 409438 CDS YP_002294284.1 209920200 7001394 complement(3116487..3116780) 1 NC_011415.1 hypothetical protein 3116780 7001394 ECSE_3009 Escherichia coli SE11 hypothetical protein YP_002294284.1 3116487 R 409438 CDS YP_002294285.1 209920201 7001395 complement(3116780..3117700) 1 NC_011415.1 hypothetical protein 3117700 7001395 ECSE_3010 Escherichia coli SE11 hypothetical protein YP_002294285.1 3116780 R 409438 CDS YP_002294286.1 209920202 7001396 complement(3117697..3118347) 1 NC_011415.1 hypothetical protein 3118347 7001396 ECSE_3011 Escherichia coli SE11 hypothetical protein YP_002294286.1 3117697 R 409438 CDS YP_002294287.1 209920203 7001397 complement(3118329..3119075) 1 NC_011415.1 hypothetical protein 3119075 7001397 ECSE_3012 Escherichia coli SE11 hypothetical protein YP_002294287.1 3118329 R 409438 CDS YP_002294288.1 209920204 7001398 complement(3119086..3120141) 1 NC_011415.1 hypothetical protein 3120141 7001398 ECSE_3013 Escherichia coli SE11 hypothetical protein YP_002294288.1 3119086 R 409438 CDS YP_002294289.1 209920205 7001399 complement(3120153..3120692) 1 NC_011415.1 hypothetical protein 3120692 7001399 ECSE_3014 Escherichia coli SE11 hypothetical protein YP_002294289.1 3120153 R 409438 CDS YP_002294290.1 209920206 7001400 complement(3120689..3122251) 1 NC_011415.1 hypothetical protein 3122251 7001400 ECSE_3015 Escherichia coli SE11 hypothetical protein YP_002294290.1 3120689 R 409438 CDS YP_002294291.1 209920207 7001401 complement(3122349..3125006) 1 NC_011415.1 hypothetical protein 3125006 7001401 ECSE_3016 Escherichia coli SE11 hypothetical protein YP_002294291.1 3122349 R 409438 CDS YP_002294292.1 209920208 7001402 complement(3125242..3125394) 1 NC_011415.1 hypothetical protein 3125394 7001402 ECSE_3017 Escherichia coli SE11 hypothetical protein YP_002294292.1 3125242 R 409438 CDS YP_002294293.1 209920209 7001403 complement(3125659..3126393) 1 NC_011415.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 3126393 7001403 ECSE_3018 Escherichia coli SE11 phosphoadenosine phosphosulfate reductase YP_002294293.1 3125659 R 409438 CDS YP_002294294.1 209920210 7001404 complement(3126467..3128179) 1 NC_011415.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3128179 7001404 ECSE_3019 Escherichia coli SE11 sulfite reductase subunit beta YP_002294294.1 3126467 R 409438 CDS YP_002294295.1 209920211 7001405 complement(3128179..3129978) 1 NC_011415.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity; sulfite reductase subunit alpha 3129978 cysJ 7001405 cysJ Escherichia coli SE11 sulfite reductase subunit alpha YP_002294295.1 3128179 R 409438 CDS YP_002294296.1 209920212 7001406 3130297..3130659 1 NC_011415.1 putative 6-pyruvoyl tetrahydrobiopterin synthase 3130659 7001406 ECSE_3021 Escherichia coli SE11 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_002294296.1 3130297 D 409438 CDS YP_002294297.1 209920213 7001407 3130737..3132008 1 NC_011415.1 hypothetical protein 3132008 7001407 ECSE_3022 Escherichia coli SE11 hypothetical protein YP_002294297.1 3130737 D 409438 CDS YP_002294298.1 209920214 7001408 3131963..3132259 1 NC_011415.1 hypothetical protein 3132259 7001408 ECSE_3023 Escherichia coli SE11 hypothetical protein YP_002294298.1 3131963 D 409438 CDS YP_002294299.1 209920215 7001409 3132276..3132851 1 NC_011415.1 putative anti-terminator regulator 3132851 7001409 ECSE_3024 Escherichia coli SE11 putative anti-terminator regulator YP_002294299.1 3132276 D 409438 CDS YP_002294300.1 209920216 7001410 complement(3132999..3133892) 1 NC_011415.1 putative electron transfer flavoprotein 3133892 7001410 ECSE_3025 Escherichia coli SE11 putative electron transfer flavoprotein YP_002294300.1 3132999 R 409438 CDS YP_002294301.1 209920217 7001411 complement(3133856..3134641) 1 NC_011415.1 putative electron transfer flavoprotein 3134641 7001411 ECSE_3026 Escherichia coli SE11 putative electron transfer flavoprotein YP_002294301.1 3133856 R 409438 CDS YP_002294302.1 209920218 7001412 complement(3134613..3136022) 1 NC_011415.1 putative transport protein 3136022 7001412 ECSE_3027 Escherichia coli SE11 putative transport protein YP_002294302.1 3134613 R 409438 CDS YP_002294303.1 209920219 7001413 complement(3136044..3137498) 1 NC_011415.1 hypothetical protein 3137498 7001413 ECSE_3028 Escherichia coli SE11 hypothetical protein YP_002294303.1 3136044 R 409438 CDS YP_002294304.1 209920220 7001414 complement(3137568..3138428) 1 NC_011415.1 putative oxidoreductase 3138428 7001414 ECSE_3029 Escherichia coli SE11 putative oxidoreductase YP_002294304.1 3137568 R 409438 CDS YP_002294305.1 209920221 7001415 3138672..3139949 1 NC_011415.1 putative transport protein 3139949 7001415 ECSE_3030 Escherichia coli SE11 putative transport protein YP_002294305.1 3138672 D 409438 CDS YP_002294306.1 209920222 7001416 3139976..3141454 1 NC_011415.1 putative kinase 3141454 7001416 ECSE_3031 Escherichia coli SE11 putative kinase YP_002294306.1 3139976 D 409438 CDS YP_002294307.1 209920223 7001417 3142130..3142264 1 NC_011415.1 hypothetical protein 3142264 7001417 ECSE_3032 Escherichia coli SE11 hypothetical protein YP_002294307.1 3142130 D 409438 CDS YP_002294309.1 209920225 7001419 complement(3143681..3144352) 1 NC_011415.1 hypothetical protein 3144352 7001419 ECSE_3034 Escherichia coli SE11 hypothetical protein YP_002294309.1 3143681 R 409438 CDS YP_002294310.1 209920226 7001420 3144491..3144631 1 NC_011415.1 hypothetical protein 3144631 7001420 ECSE_3035 Escherichia coli SE11 hypothetical protein YP_002294310.1 3144491 D 409438 CDS YP_002294311.1 209920227 7001421 3144813..3145517 1 NC_011415.1 hypothetical protein 3145517 7001421 ECSE_3036 Escherichia coli SE11 hypothetical protein YP_002294311.1 3144813 D 409438 CDS YP_002294312.1 209920228 7001422 complement(3145577..3146875) 1 NC_011415.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3146875 eno 7001422 eno Escherichia coli SE11 phosphopyruvate hydratase YP_002294312.1 3145577 R 409438 CDS YP_002294313.1 209920229 7001423 complement(3146963..3148600) 1 NC_011415.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3148600 pyrG 7001423 pyrG Escherichia coli SE11 CTP synthetase YP_002294313.1 3146963 R 409438 CDS YP_002294314.1 209920230 7001424 complement(3148828..3149619) 1 NC_011415.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 3149619 mazG 7001424 mazG Escherichia coli SE11 nucleoside triphosphate pyrophosphohydrolase YP_002294314.1 3148828 R 409438 CDS YP_002294315.1 209920231 7001425 complement(3149690..3150025) 1 NC_011415.1 MazF; endoribonuclease; toxin of the ChpA-ChpR toxin-antitoxin system; toxin ChpA 3150025 7001425 ECSE_3040 Escherichia coli SE11 toxin ChpA YP_002294315.1 3149690 R 409438 CDS YP_002294316.1 209920232 7001426 complement(3150025..3150273) 1 NC_011415.1 part of the MazF-MazE toxin-antitoxin system; conteracts MazF; antitoxin MazE 3150273 7001426 ECSE_3041 Escherichia coli SE11 antitoxin MazE YP_002294316.1 3150025 R 409438 CDS YP_002294317.1 209920233 7001427 complement(3150351..3152585) 1 NC_011415.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 3152585 relA 7001427 relA Escherichia coli SE11 GDP/GTP pyrophosphokinase YP_002294317.1 3150351 R 409438 CDS YP_002294318.1 209920234 7001428 complement(3152633..3153934) 1 NC_011415.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 3153934 rumA 7001428 rumA Escherichia coli SE11 23S rRNA 5-methyluridine methyltransferase YP_002294318.1 3152633 R 409438 CDS YP_002294319.1 209920235 7001429 3153991..3156747 1 NC_011415.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; hybrid sensory histidine kinase BarA 3156747 7001429 ECSE_3044 Escherichia coli SE11 hybrid sensory histidine kinase BarA YP_002294319.1 3153991 D 409438 CDS YP_002294320.1 209920236 7001430 complement(3156979..3158319) 1 NC_011415.1 glucarate dehydratase 3158319 7001430 ECSE_3045 Escherichia coli SE11 glucarate dehydratase YP_002294320.1 3156979 R 409438 CDS YP_002294321.1 209920237 7001431 complement(3158340..3159680) 1 NC_011415.1 putative glucarate dehydratase 3159680 7001431 ECSE_3046 Escherichia coli SE11 putative glucarate dehydratase YP_002294321.1 3158340 R 409438 CDS YP_002294322.1 209920238 7001432 complement(3159682..3161034) 1 NC_011415.1 putative glucarate transporter 3161034 7001432 ECSE_3047 Escherichia coli SE11 putative glucarate transporter YP_002294322.1 3159682 R 409438 CDS YP_002294323.1 209920239 7001433 complement(3161129..3161254) 1 NC_011415.1 hypothetical protein 3161254 7001433 ECSE_3049 Escherichia coli SE11 hypothetical protein YP_002294323.1 3161129 R 409438 CDS YP_002294324.1 209920240 7001435 3161248..3161376 1 NC_011415.1 hypothetical protein 3161376 7001435 ECSE_3048 Escherichia coli SE11 hypothetical protein YP_002294324.1 3161248 D 409438 CDS YP_002294325.1 209920241 7001434 complement(3161469..3161918) 1 NC_011415.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3161918 7001434 ECSE_3050 Escherichia coli SE11 flavodoxin YP_002294325.1 3161469 R 409438 CDS YP_002294326.1 209920242 7001436 complement(3161936..3162718) 1 NC_011415.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 3162718 7001436 ECSE_3051 Escherichia coli SE11 tRNA pseudouridine synthase C YP_002294326.1 3161936 R 409438 CDS YP_002294327.1 209920243 7001437 complement(3162718..3163047) 1 NC_011415.1 hypothetical protein 3163047 7001437 ECSE_3052 Escherichia coli SE11 hypothetical protein YP_002294327.1 3162718 R 409438 CDS YP_002294328.1 209920244 7001438 complement(3163669..3164214) 1 NC_011415.1 putative SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function; SecY interacting protein Syd 3164214 7001438 ECSE_3053 Escherichia coli SE11 SecY interacting protein Syd YP_002294328.1 3163669 R 409438 CDS YP_002294329.1 209920245 7001439 3164282..3165130 1 NC_011415.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3165130 queF 7001439 queF Escherichia coli SE11 7-cyano-7-deazaguanine reductase YP_002294329.1 3164282 D 409438 CDS YP_002294330.1 209920246 7001440 3165242..3166606 1 NC_011415.1 hypothetical protein 3166606 7001440 ECSE_3055 Escherichia coli SE11 hypothetical protein YP_002294330.1 3165242 D 409438 CDS YP_002294331.1 209920247 7001441 3167163..3168452 1 NC_011415.1 serine transport protein 3168452 7001441 ECSE_3056 Escherichia coli SE11 serine transport protein YP_002294331.1 3167163 D 409438 CDS YP_002294332.1 209920248 7001442 3168510..3169877 1 NC_011415.1 L-serine dehydratase 3169877 7001442 ECSE_3057 Escherichia coli SE11 L-serine dehydratase YP_002294332.1 3168510 D 409438 CDS YP_002294333.1 209920249 7001443 3169899..3170744 1 NC_011415.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups; exonuclease IX 3170744 xni 7001443 xni Escherichia coli SE11 exonuclease IX YP_002294333.1 3169899 D 409438 CDS YP_002294334.1 209920250 7001444 complement(3170799..3171947) 1 NC_011415.1 L-1,2-propanediol oxidoreductase 3171947 7001444 ECSE_3059 Escherichia coli SE11 L-1,2-propanediol oxidoreductase YP_002294334.1 3170799 R 409438 CDS YP_002294335.1 209920251 7001445 complement(3171975..3172622) 1 NC_011415.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3172622 7001445 ECSE_3060 Escherichia coli SE11 L-fuculose phosphate aldolase YP_002294335.1 3171975 R 409438 CDS YP_002294336.1 209920252 7001446 3173169..3174485 1 NC_011415.1 L-fucose transporter 3174485 7001446 ECSE_3061 Escherichia coli SE11 L-fucose transporter YP_002294336.1 3173169 D 409438 CDS YP_002294337.1 209920253 7001447 3174518..3176293 1 NC_011415.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 3176293 fucI 7001447 fucI Escherichia coli SE11 L-fucose isomerase YP_002294337.1 3174518 D 409438 CDS YP_002294338.1 209920254 7001448 3176372..3177820 1 NC_011415.1 L-fuculokinase 3177820 7001448 ECSE_3063 Escherichia coli SE11 L-fuculokinase YP_002294338.1 3176372 D 409438 CDS YP_002294339.1 209920255 7001449 3177822..3178244 1 NC_011415.1 fucose operon protein 3178244 7001449 ECSE_3064 Escherichia coli SE11 fucose operon protein YP_002294339.1 3177822 D 409438 CDS YP_002294340.1 209920256 7001450 3178302..3179033 1 NC_011415.1 regulates expression of genes involved in L-fucose utilization; DNA-binding transcriptional activator FucR 3179033 7001450 ECSE_3065 Escherichia coli SE11 DNA-binding transcriptional activator FucR YP_002294340.1 3178302 D 409438 CDS YP_002294341.1 209920257 7001451 complement(3179077..3180177) 1 NC_011415.1 putative RNA 2'-O-ribose methyltransferase 3180177 7001451 ECSE_3066 Escherichia coli SE11 putative RNA 2'-O-ribose methyltransferase YP_002294341.1 3179077 R 409438 CDS YP_002294342.1 209920258 7001452 complement(3180170..3180565) 1 NC_011415.1 hypothetical protein 3180565 7001452 ECSE_3067 Escherichia coli SE11 hypothetical protein YP_002294342.1 3180170 R 409438 CDS YP_002294343.1 209920259 7001453 complement(3180584..3181501) 1 NC_011415.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 3181501 7001453 ECSE_3068 Escherichia coli SE11 DNA-binding transcriptional activator GcvA YP_002294343.1 3180584 R 409438 CDS YP_002294344.1 209920260 7001454 complement(3181852..3182079) 1 NC_011415.1 hypothetical protein 3182079 7001454 ECSE_3069 Escherichia coli SE11 hypothetical protein YP_002294344.1 3181852 R 409438 CDS YP_002294345.1 209920261 7001455 3182271..3183476 1 NC_011415.1 cysteine sulfinate desulfinase 3183476 7001455 ECSE_3070 Escherichia coli SE11 cysteine sulfinate desulfinase YP_002294345.1 3182271 D 409438 CDS YP_002294346.1 209920262 7001456 3183476..3183919 1 NC_011415.1 hypothetical protein 3183919 7001456 ECSE_3071 Escherichia coli SE11 hypothetical protein YP_002294346.1 3183476 D 409438 CDS YP_002294347.1 209920263 7001457 complement(3183970..3184776) 1 NC_011415.1 hypothetical protein 3184776 7001457 ECSE_3072 Escherichia coli SE11 hypothetical protein YP_002294347.1 3183970 R 409438 CDS YP_002294348.1 209920264 7001458 complement(3184853..3185950) 1 NC_011415.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 3185950 mltA 7001458 mltA Escherichia coli SE11 murein transglycosylase A YP_002294348.1 3184853 R 409438 CDS YP_002294349.1 209920265 7003098 complement(3186530..3187783) 1 NC_011415.1 N-acetylmuramoyl-L-alanine amidase 3187783 7003098 ECSE_3074 Escherichia coli SE11 N-acetylmuramoyl-L-alanine amidase YP_002294349.1 3186530 R 409438 CDS YP_002294350.1 209920266 7001460 3188015..3189346 1 NC_011415.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 3189346 7001460 ECSE_3075 Escherichia coli SE11 N-acetylglutamate synthase YP_002294350.1 3188015 D 409438 CDS YP_002294351.1 209920267 7001461 complement(3189408..3191234) 1 NC_011415.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 3191234 recD 7001461 recD Escherichia coli SE11 exonuclease V subunit alpha YP_002294351.1 3189408 R 409438 CDS YP_002294352.1 209920268 7001462 complement(3191234..3194776) 1 NC_011415.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 3194776 recB 7001462 recB Escherichia coli SE11 exonuclease V subunit beta YP_002294352.1 3191234 R 409438 CDS YP_002294353.1 209920269 7001463 complement(3194769..3197657) 1 NC_011415.1 protease III 3197657 7001463 ECSE_3078 Escherichia coli SE11 protease III YP_002294353.1 3194769 R 409438 CDS YP_002294354.1 209920270 7001464 complement(3197833..3201201) 1 NC_011415.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 3201201 recC 7001464 recC Escherichia coli SE11 exonuclease V subunit gamma YP_002294354.1 3197833 R 409438 CDS YP_002294355.1 209920271 7001465 complement(3201214..3201537) 1 NC_011415.1 hypothetical protein 3201537 7001465 ECSE_3080 Escherichia coli SE11 hypothetical protein YP_002294355.1 3201214 R 409438 CDS YP_002294356.1 209920272 7001466 complement(3201522..3201929) 1 NC_011415.1 hypothetical protein 3201929 7001466 ECSE_3081 Escherichia coli SE11 hypothetical protein YP_002294356.1 3201522 R 409438 CDS YP_002294357.1 209920273 7001467 complement(3201926..3202489) 1 NC_011415.1 hypothetical protein 3202489 7001467 ECSE_3082 Escherichia coli SE11 hypothetical protein YP_002294357.1 3201926 R 409438 CDS YP_002294358.1 209920274 7001468 complement(3202480..3202950) 1 NC_011415.1 hypothetical protein 3202950 7001468 ECSE_3083 Escherichia coli SE11 hypothetical protein YP_002294358.1 3202480 R 409438 CDS YP_002294359.1 209920275 7001469 complement(3203135..3203929) 1 NC_011415.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 3203929 thyA 7001469 thyA Escherichia coli SE11 thymidylate synthase YP_002294359.1 3203135 R 409438 CDS YP_002294360.1 209920276 7001470 complement(3203936..3204811) 1 NC_011415.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3204811 7001470 ECSE_3085 Escherichia coli SE11 prolipoprotein diacylglyceryl transferase YP_002294360.1 3203936 R 409438 CDS YP_002294361.1 209920277 7001471 complement(3204962..3207208) 1 NC_011415.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr; fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain 3207208 7001471 ECSE_3086 Escherichia coli SE11 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain YP_002294361.1 3204962 R 409438 CDS YP_002294362.1 209920278 7001472 complement(3207221..3207751) 1 NC_011415.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3207751 7001472 ECSE_3087 Escherichia coli SE11 dinucleoside polyphosphate hydrolase YP_002294362.1 3207221 R 409438 CDS YP_002294363.1 209920279 7001473 3208436..3209125 1 NC_011415.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 3209125 7001473 ECSE_3088 Escherichia coli SE11 DNA mismatch repair protein YP_002294363.1 3208436 D 409438 CDS YP_002294364.1 209920280 7001474 3209194..3209907 1 NC_011415.1 putative transport protein 3209907 7001474 ECSE_3089 Escherichia coli SE11 putative transport protein YP_002294364.1 3209194 D 409438 CDS YP_002294365.1 209920281 7001475 3210045..3210263 1 NC_011415.1 hypothetical protein 3210263 7001475 ECSE_3090 Escherichia coli SE11 hypothetical protein YP_002294365.1 3210045 D 409438 CDS YP_002294366.1 209920282 7001476 3210371..3211411 1 NC_011415.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH; putative aldo-keto reductase 3211411 tas 7001476 tas Escherichia coli SE11 putative aldo-keto reductase YP_002294366.1 3210371 D 409438 CDS YP_002294367.1 209920283 7001477 complement(3211443..3212636) 1 NC_011415.1 lysophospholipid transporter LplT 3212636 7001477 ECSE_3092 Escherichia coli SE11 lysophospholipid transporter LplT YP_002294367.1 3211443 R 409438 CDS YP_002294368.1 209920284 7001478 complement(3212629..3214788) 1 NC_011415.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase 3214788 7001478 ECSE_3093 Escherichia coli SE11 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase YP_002294368.1 3212629 R 409438 CDS YP_002294369.1 209920285 7001479 3215374..3216405 1 NC_011415.1 controls transcription of galETKM; DNA-binding transcriptional regulator GalR 3216405 7001479 ECSE_3094 Escherichia coli SE11 DNA-binding transcriptional regulator GalR YP_002294369.1 3215374 D 409438 CDS YP_002294370.1 209920286 7001480 complement(3216412..3217674) 1 NC_011415.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase 3217674 7001480 ECSE_3095 Escherichia coli SE11 diaminopimelate decarboxylase YP_002294370.1 3216412 R 409438 CDS YP_002294371.1 209920287 7001481 3217796..3218731 1 NC_011415.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase; DNA-binding transcriptional regulator LysR 3218731 7001481 ECSE_3096 Escherichia coli SE11 DNA-binding transcriptional regulator LysR YP_002294371.1 3217796 D 409438 CDS YP_002294372.1 209920288 7001482 complement(3218718..3219410) 1 NC_011415.1 putative racemase 3219410 7001482 ECSE_3097 Escherichia coli SE11 putative racemase YP_002294372.1 3218718 R 409438 CDS YP_002294373.1 209920289 7001483 complement(3219539..3220957) 1 NC_011415.1 L-arabinose transport protein 3220957 7001483 ECSE_3098 Escherichia coli SE11 L-arabinose transport protein YP_002294373.1 3219539 R 409438 CDS YP_002294374.1 209920290 7001484 complement(3221272..3222033) 1 NC_011415.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate; 2-deoxy-D-gluconate 3-dehydrogenase 3222033 7001484 ECSE_3099 Escherichia coli SE11 2-deoxy-D-gluconate 3-dehydrogenase YP_002294374.1 3221272 R 409438 CDS YP_002294375.1 209920291 7001485 complement(3222063..3222899) 1 NC_011415.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3222899 7001485 ECSE_3100 Escherichia coli SE11 5-keto-4-deoxyuronate isomerase YP_002294375.1 3222063 R 409438 CDS YP_002294376.1 209920292 7001486 complement(3223186..3224367) 1 NC_011415.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3224367 7001486 ECSE_3101 Escherichia coli SE11 acetyl-CoA acetyltransferase YP_002294376.1 3223186 R 409438 CDS YP_002294377.1 209920293 7001487 3224622..3225851 1 NC_011415.1 putative transport protein 3225851 7001487 ECSE_3102 Escherichia coli SE11 putative transport protein YP_002294377.1 3224622 D 409438 CDS YP_002294378.1 209920294 7001488 3226251..3226943 1 NC_011415.1 hypothetical protein 3226943 7001488 ECSE_3103 Escherichia coli SE11 hypothetical protein YP_002294378.1 3226251 D 409438 CDS YP_002294379.1 209920295 7001489 3227277..3228086 1 NC_011415.1 putative transcriptional regulator 3228086 7001489 ECSE_3104 Escherichia coli SE11 putative transcriptional regulator YP_002294379.1 3227277 D 409438 CDS YP_002294380.1 209920296 7001490 3228169..3228561 1 NC_011415.1 hypothetical protein 3228561 7001490 ECSE_3105 Escherichia coli SE11 hypothetical protein YP_002294380.1 3228169 D 409438 CDS YP_002294381.1 209920297 7001491 complement(3228594..3228734) 1 NC_011415.1 hypothetical protein 3228734 7001491 ECSE_3106 Escherichia coli SE11 hypothetical protein YP_002294381.1 3228594 R 409438 CDS YP_002294382.1 209920298 7001492 complement(3228710..3229135) 1 NC_011415.1 hypothetical protein 3229135 7001492 ECSE_3107 Escherichia coli SE11 hypothetical protein YP_002294382.1 3228710 R 409438 CDS YP_002294383.1 209920299 7001493 3229329..3229766 1 NC_011415.1 hypothetical protein 3229766 7001493 ECSE_3108 Escherichia coli SE11 hypothetical protein YP_002294383.1 3229329 D 409438 CDS YP_002294384.1 209920300 7001494 3230044..3230535 1 NC_011415.1 hypothetical protein 3230535 7001494 ECSE_3109 Escherichia coli SE11 hypothetical protein YP_002294384.1 3230044 D 409438 CDS YP_002294385.1 209920301 7001495 3230870..3232246 1 NC_011415.1 transcriptional regulator 3232246 7001495 ECSE_3110 Escherichia coli SE11 transcriptional regulator YP_002294385.1 3230870 D 409438 CDS YP_002294386.1 209920302 7001496 3232414..3232632 1 NC_011415.1 hypothetical protein 3232632 7001496 ECSE_3111 Escherichia coli SE11 hypothetical protein YP_002294386.1 3232414 D 409438 CDS YP_002294387.1 209920303 7001497 complement(3232699..3232917) 1 NC_011415.1 hypothetical protein 3232917 7001497 ECSE_3112 Escherichia coli SE11 hypothetical protein YP_002294387.1 3232699 R 409438 CDS YP_002294388.1 209920304 7001498 3232940..3233191 1 NC_011415.1 hypothetical protein 3233191 7001498 ECSE_3113 Escherichia coli SE11 hypothetical protein YP_002294388.1 3232940 D 409438 CDS YP_002294389.1 209920305 7001499 complement(3233236..3233682) 1 NC_011415.1 hypothetical protein 3233682 7001499 ECSE_3114 Escherichia coli SE11 hypothetical protein YP_002294389.1 3233236 R 409438 CDS YP_002294390.1 209920306 7001500 complement(3233713..3233868) 1 NC_011415.1 hypothetical protein 3233868 7001500 ECSE_3115 Escherichia coli SE11 hypothetical protein YP_002294390.1 3233713 R 409438 CDS YP_002294391.1 209920307 7001501 complement(3234089..3234520) 1 NC_011415.1 hypothetical protein 3234520 7001501 ECSE_3116 Escherichia coli SE11 hypothetical protein YP_002294391.1 3234089 R 409438 CDS YP_002294392.1 209920308 7001502 complement(3234737..3235318) 1 NC_011415.1 hypothetical protein 3235318 7001502 ECSE_3117 Escherichia coli SE11 hypothetical protein YP_002294392.1 3234737 R 409438 CDS YP_002294393.1 209920309 7001503 complement(3235334..3236068) 1 NC_011415.1 putative lipoprotein of type III secretion apparatus 3236068 7001503 ECSE_3118 Escherichia coli SE11 putative lipoprotein of type III secretion apparatus YP_002294393.1 3235334 R 409438 CDS YP_002294394.1 209920310 7001504 complement(3236109..3236324) 1 NC_011415.1 putative type III secretion protein 3236324 7001504 ECSE_3119 Escherichia coli SE11 putative type III secretion protein YP_002294394.1 3236109 R 409438 CDS YP_002294395.1 209920311 7001505 complement(3236670..3237851) 1 NC_011415.1 putative type III secretion protein 3237851 7001505 ECSE_3120 Escherichia coli SE11 putative type III secretion protein YP_002294395.1 3236670 R 409438 CDS YP_002294396.1 209920312 7001506 3238109..3238609 1 NC_011415.1 putative type III secretion system regulator 3238609 7001506 ECSE_3121 Escherichia coli SE11 putative type III secretion system regulator YP_002294396.1 3238109 D 409438 CDS YP_002294397.1 209920313 7001507 complement(3238965..3239357) 1 NC_011415.1 putative type III secretion protein 3239357 7001507 ECSE_3122 Escherichia coli SE11 putative type III secretion protein YP_002294397.1 3238965 R 409438 CDS YP_002294398.1 209920314 7001508 complement(3239354..3240085) 1 NC_011415.1 putative type III secretion protein 3240085 7001508 ECSE_3123 Escherichia coli SE11 putative type III secretion protein YP_002294398.1 3239354 R 409438 CDS YP_002294399.1 209920315 7001509 complement(3240094..3240861) 1 NC_011415.1 putative type III secretion protein 3240861 7001509 ECSE_3124 Escherichia coli SE11 putative type III secretion protein YP_002294399.1 3240094 R 409438 CDS YP_002294400.1 209920316 7001510 complement(3240937..3241122) 1 NC_011415.1 putative type III secretion protein 3241122 7001510 ECSE_3125 Escherichia coli SE11 putative type III secretion protein YP_002294400.1 3240937 R 409438 CDS YP_002294401.1 209920317 7001511 complement(3241132..3241797) 1 NC_011415.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 3241797 spaP 7001511 spaP Escherichia coli SE11 surface presentation of antigens protein SpaP YP_002294401.1 3241132 R 409438 CDS YP_002294402.1 209920318 7001512 complement(3241787..3242359) 1 NC_011415.1 putative type III secretion protein 3242359 7001512 ECSE_3127 Escherichia coli SE11 putative type III secretion protein YP_002294402.1 3241787 R 409438 CDS YP_002294403.1 209920319 7001513 complement(3242866..3244518) 1 NC_011415.1 hypothetical protein 3244518 7001513 ECSE_3128 Escherichia coli SE11 hypothetical protein YP_002294403.1 3242866 R 409438 CDS YP_002294404.1 209920320 7003131 complement(3244862..3245617) 1 NC_011415.1 putative lipoprotein 3245617 7003131 ECSE_3129 Escherichia coli SE11 putative lipoprotein YP_002294404.1 3244862 R 409438 CDS YP_002294405.1 209920321 7001515 3246071..3248329 1 NC_011415.1 putative molybdenum cofactor-binding protein; participates in purine salvage; xanthine dehydrogenase subunit XdhA 3248329 7001515 ECSE_3130 Escherichia coli SE11 xanthine dehydrogenase subunit XdhA YP_002294405.1 3246071 D 409438 CDS YP_002294406.1 209920322 7001516 3248340..3249218 1 NC_011415.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage; xanthine dehydrogenase subunit XdhB 3249218 7001516 ECSE_3131 Escherichia coli SE11 xanthine dehydrogenase subunit XdhB YP_002294406.1 3248340 D 409438 CDS YP_002294407.1 209920323 7001517 3249215..3249694 1 NC_011415.1 iron-sulfur-binding subunit; with XdhA and XdhB participates in purine salvage; xanthine dehydrogenase subunit XdhC 3249694 7001517 ECSE_3132 Escherichia coli SE11 xanthine dehydrogenase subunit XdhC YP_002294407.1 3249215 D 409438 CDS YP_002294408.1 209920324 7001518 complement(3249734..3251512) 1 NC_011415.1 putative transcriptional regulator 3251512 7001518 ECSE_3133 Escherichia coli SE11 putative transcriptional regulator YP_002294408.1 3249734 R 409438 CDS YP_002294409.1 209920325 7001519 3251988..3253178 1 NC_011415.1 aspartate/ornithine carbamoyltransferase family protein 3253178 7001519 ECSE_3134 Escherichia coli SE11 aspartate/ornithine carbamoyltransferase family protein YP_002294409.1 3251988 D 409438 CDS YP_002294410.1 209920326 7001520 3253236..3254432 1 NC_011415.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 3254432 7001520 ECSE_3135 Escherichia coli SE11 diaminopropionate ammonia-lyase YP_002294410.1 3253236 D 409438 CDS YP_002294411.1 209920327 7001521 3254490..3255701 1 NC_011415.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 3255701 7001521 ECSE_3136 Escherichia coli SE11 peptidase YP_002294411.1 3254490 D 409438 CDS YP_002294412.1 209920328 7001522 3255754..3257139 1 NC_011415.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 3257139 7001522 ECSE_3137 Escherichia coli SE11 phenylhydantoinase YP_002294412.1 3255754 D 409438 CDS YP_002294413.1 209920329 7001523 3257187..3258119 1 NC_011415.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 3258119 7001523 ECSE_3138 Escherichia coli SE11 carbamate kinase YP_002294413.1 3257187 D 409438 CDS YP_002294414.1 209920330 7001524 complement(3258160..3259785) 1 NC_011415.1 hypothetical protein 3259785 7001524 ECSE_3139 Escherichia coli SE11 hypothetical protein YP_002294414.1 3258160 R 409438 CDS YP_002294415.1 209920331 7001525 complement(3259833..3260540) 1 NC_011415.1 hypothetical protein 3260540 7001525 ECSE_3140 Escherichia coli SE11 hypothetical protein YP_002294415.1 3259833 R 409438 CDS YP_002294416.1 209920332 7001526 3260706..3261278 1 NC_011415.1 hypothetical protein 3261278 7001526 ECSE_3141 Escherichia coli SE11 hypothetical protein YP_002294416.1 3260706 D 409438 CDS YP_002294417.1 209920333 7001527 3261607..3264705 1 NC_011415.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; putative selenate reductase subunit YgfK 3264705 7001527 ECSE_3142 Escherichia coli SE11 putative selenate reductase subunit YgfK YP_002294417.1 3261607 D 409438 CDS YP_002294418.1 209920334 7001528 3264708..3266036 1 NC_011415.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 3266036 7001528 ECSE_3143 Escherichia coli SE11 putative chlorohydrolase/aminohydrolase YP_002294418.1 3264708 D 409438 CDS YP_002294419.1 209920335 7001529 3266087..3266866 1 NC_011415.1 with YgfK and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfM contains a FAD domain; putative selenate reductase subunit YgfM 3266866 7001529 ECSE_3144 Escherichia coli SE11 putative selenate reductase subunit YgfM YP_002294419.1 3266087 D 409438 CDS YP_002294420.1 209920336 7001530 3266863..3269733 1 NC_011415.1 with YgfK and YgfM forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; molybdopterin-containing enzyme; oxidase activity toward hypoxanthine and xanthine can be detected if these substrates are present at high concentration; putative selenate reductase subunit YgfN 3269733 7001530 ECSE_3145 Escherichia coli SE11 putative selenate reductase subunit YgfN YP_002294420.1 3266863 D 409438 CDS YP_002294421.1 209920337 7001531 3269841..3271298 1 NC_011415.1 putative transport protein 3271298 7001531 ECSE_3146 Escherichia coli SE11 putative transport protein YP_002294421.1 3269841 D 409438 CDS YP_002294422.1 209920338 7001532 3271313..3272632 1 NC_011415.1 Catalyzes the deamination of guanine; guanine deaminase 3272632 7001532 ECSE_3147 Escherichia coli SE11 guanine deaminase YP_002294422.1 3271313 D 409438 CDS YP_002294423.1 209920339 7001533 3272668..3274035 1 NC_011415.1 putative transport protein 3274035 7001533 ECSE_3148 Escherichia coli SE11 putative transport protein YP_002294423.1 3272668 D 409438 CDS YP_002294424.1 209920340 7001534 complement(3274071..3274562) 1 NC_011415.1 putative oxidoreductase 3274562 7001534 ECSE_3149 Escherichia coli SE11 putative oxidoreductase YP_002294424.1 3274071 R 409438 CDS YP_002294425.1 209920341 7001535 complement(3274559..3276478) 1 NC_011415.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic); putative oxidoreductase Fe-S binding subunit 3276478 7001535 ECSE_3150 Escherichia coli SE11 putative oxidoreductase Fe-S binding subunit YP_002294425.1 3274559 R 409438 CDS YP_002294426.1 209920342 7001536 3276845..3278362 1 NC_011415.1 putative transport protein 3278362 7001536 ECSE_3151 Escherichia coli SE11 putative transport protein YP_002294426.1 3276845 D 409438 CDS YP_002294427.1 209920343 7001537 3278612..3279160 1 NC_011415.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate; isopentenyl-diphosphate delta-isomerase 3279160 7001537 ECSE_3152 Escherichia coli SE11 isopentenyl-diphosphate delta-isomerase YP_002294427.1 3278612 D 409438 CDS YP_002294428.1 209920344 7001538 complement(3279203..3280720) 1 NC_011415.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3280720 lysS 7001538 lysS Escherichia coli SE11 lysyl-tRNA synthetase YP_002294428.1 3279203 R 409438 CDS YP_002294429.1 209920345 7001539 complement(3280730..3281611) 1 NC_011415.1 peptide chain release factor 2 3281611 7001539 ECSE_3154 Escherichia coli SE11 peptide chain release factor 2 YP_002294429.1 3280730 R 409438 CDS YP_002294430.1 209920346 7001540 complement(3281919..3283652) 1 NC_011415.1 5'-3' single-stranded-DNA-specific exonuclease; ssDNA exonuclease RecJ 3283652 7001540 ECSE_3155 Escherichia coli SE11 ssDNA exonuclease RecJ YP_002294430.1 3281919 R 409438 CDS YP_002294431.1 209920347 7001541 complement(3283658..3284368) 1 NC_011415.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity; thiol:disulfide interchange protein DsbC 3284368 7001541 ECSE_3156 Escherichia coli SE11 thiol:disulfide interchange protein DsbC YP_002294431.1 3283658 R 409438 CDS YP_002294432.1 209920348 7001542 complement(3284393..3285289) 1 NC_011415.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3285289 xerD 7001542 xerD Escherichia coli SE11 site-specific tyrosine recombinase XerD YP_002294432.1 3284393 R 409438 CDS YP_002294433.1 209920349 7001543 3285401..3285922 1 NC_011415.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic; flavodoxin FldB 3285922 7001543 ECSE_3158 Escherichia coli SE11 flavodoxin FldB YP_002294433.1 3285401 D 409438 CDS YP_002294434.1 209920350 7001544 complement(3285962..3286369) 1 NC_011415.1 hypothetical protein 3286369 7001544 ECSE_3159 Escherichia coli SE11 hypothetical protein YP_002294434.1 3285962 R 409438 CDS YP_002294435.1 209920351 7001545 complement(3286350..3286616) 1 NC_011415.1 hypothetical protein 3286616 7001545 ECSE_3160 Escherichia coli SE11 hypothetical protein YP_002294435.1 3286350 R 409438 CDS YP_002294436.1 209920352 7001546 3286859..3287839 1 NC_011415.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator; putative global regulator 3287839 7001546 ECSE_3161 Escherichia coli SE11 putative global regulator YP_002294436.1 3286859 D 409438 CDS YP_002294437.1 209920353 7001547 complement(3288035..3288694) 1 NC_011415.1 hypothetical protein 3288694 7001547 ECSE_3162 Escherichia coli SE11 hypothetical protein YP_002294437.1 3288035 R 409438 CDS YP_002294438.1 209920354 7001548 complement(3288858..3289169) 1 NC_011415.1 hypothetical protein 3289169 7001548 ECSE_3163 Escherichia coli SE11 hypothetical protein YP_002294438.1 3288858 R 409438 CDS YP_002294439.1 209920355 7001549 3289208..3290647 1 NC_011415.1 6-phospho-beta-glucosidase 3290647 7001549 ECSE_3164 Escherichia coli SE11 6-phospho-beta-glucosidase YP_002294439.1 3289208 D 409438 CDS YP_002294440.1 209920356 7001550 complement(3290704..3291447) 1 NC_011415.1 hypothetical protein 3291447 7001550 ECSE_3165 Escherichia coli SE11 hypothetical protein YP_002294440.1 3290704 R 409438 CDS YP_002294441.1 209920357 7001551 complement(3291713..3294586) 1 NC_011415.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 3294586 7001551 ECSE_3166 Escherichia coli SE11 glycine dehydrogenase YP_002294441.1 3291713 R 409438 CDS YP_002294442.1 209920358 7001552 complement(3294705..3295094) 1 NC_011415.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 3295094 7001552 ECSE_3167 Escherichia coli SE11 glycine cleavage system protein H YP_002294442.1 3294705 R 409438 CDS YP_002294443.1 209920359 7001553 complement(3295118..3296212) 1 NC_011415.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 3296212 gcvT 7001553 gcvT Escherichia coli SE11 glycine cleavage system aminomethyltransferase T YP_002294443.1 3295118 R 409438 CDS YP_002294444.1 209920360 7001554 complement(3296659..3297861) 1 NC_011415.1 hypothetical protein 3297861 7001554 ECSE_3169 Escherichia coli SE11 hypothetical protein YP_002294444.1 3296659 R 409438 CDS YP_002294445.1 209920361 7001555 complement(3297884..3299062) 1 NC_011415.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 3299062 7001555 ECSE_3170 Escherichia coli SE11 2-octaprenyl-6-methoxyphenyl hydroxylase YP_002294445.1 3297884 R 409438 CDS YP_002294446.1 209920362 7001556 complement(3299059..3300384) 1 NC_011415.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; proline aminopeptidase P II 3300384 7001556 ECSE_3171 Escherichia coli SE11 proline aminopeptidase P II YP_002294446.1 3299059 R 409438 CDS YP_002294447.1 209920363 7001557 complement(3300410..3300988) 1 NC_011415.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 3300988 7001557 ECSE_3172 Escherichia coli SE11 hypothetical protein YP_002294447.1 3300410 R 409438 CDS YP_002294448.1 209920364 7001558 3301156..3301485 1 NC_011415.1 Z-ring-associated protein 3301485 7001558 ECSE_3173 Escherichia coli SE11 Z-ring-associated protein YP_002294448.1 3301156 D 409438 CDS YP_002294449.1 209920365 7001559 3301785..3302333 1 NC_011415.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function; putative ligase 3302333 7001559 ECSE_3174 Escherichia coli SE11 putative ligase YP_002294449.1 3301785 D 409438 CDS YP_002294450.1 209920366 7001560 complement(3303114..3304346) 1 NC_011415.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3304346 7001560 ECSE_3175 Escherichia coli SE11 D-3-phosphoglycerate dehydrogenase YP_002294450.1 3303114 R 409438 CDS YP_002294451.1 209920367 7001561 complement(3304602..3305261) 1 NC_011415.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 3305261 7001561 ECSE_3176 Escherichia coli SE11 ribose-5-phosphate isomerase A YP_002294451.1 3304602 R 409438 CDS YP_002294452.1 209920368 7001562 complement(3305317..3305502) 1 NC_011415.1 hypothetical protein 3305502 7001562 ECSE_3177 Escherichia coli SE11 hypothetical protein YP_002294452.1 3305317 R 409438 CDS YP_002294453.1 209920369 7001563 3305644..3306537 1 NC_011415.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3306537 7001563 ECSE_3178 Escherichia coli SE11 chromosome replication initiation inhibitor protein YP_002294453.1 3305644 D 409438 CDS YP_002294454.1 209920370 7001564 3306741..3308885 1 NC_011415.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 3308885 7001564 ECSE_3179 Escherichia coli SE11 methylmalonyl-CoA mutase YP_002294454.1 3306741 D 409438 CDS YP_002294455.1 209920371 7001565 3308878..3309873 1 NC_011415.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 3309873 7001565 ECSE_3180 Escherichia coli SE11 arginine/ornithine transport system ATPase YP_002294455.1 3308878 D 409438 CDS YP_002294456.1 209920372 7001566 3309842..3310669 1 NC_011415.1 catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; methylmalonyl-CoA decarboxylase 3310669 7001566 ECSE_3181 Escherichia coli SE11 methylmalonyl-CoA decarboxylase YP_002294456.1 3309842 D 409438 CDS YP_002294457.1 209920373 7001567 3310693..3312171 1 NC_011415.1 putative coenzyme A transferase 3312171 7001567 ECSE_3182 Escherichia coli SE11 putative coenzyme A transferase YP_002294457.1 3310693 D 409438 CDS YP_002294458.1 209920374 7001568 complement(3312168..3313064) 1 NC_011415.1 putative transcriptional regulator 3313064 7001568 ECSE_3183 Escherichia coli SE11 putative transcriptional regulator YP_002294458.1 3312168 R 409438 CDS YP_002294459.1 209920375 7001569 complement(3313231..3313971) 1 NC_011415.1 hypothetical protein 3313971 7001569 ECSE_3184 Escherichia coli SE11 hypothetical protein YP_002294459.1 3313231 R 409438 CDS YP_002294460.1 209920376 7001570 complement(3314064..3314699) 1 NC_011415.1 Involved in the export of arginine; arginine exporter protein 3314699 7001570 ECSE_3185 Escherichia coli SE11 arginine exporter protein YP_002294460.1 3314064 R 409438 CDS YP_002294461.1 209920377 7001571 complement(3314838..3315698) 1 NC_011415.1 participates in the regulation of osmotic pressure changes within the cel; mechanosensitive channel MscS 3315698 7001571 ECSE_3186 Escherichia coli SE11 mechanosensitive channel MscS YP_002294461.1 3314838 R 409438 CDS YP_002294462.1 209920378 7001572 complement(3315890..3316057) 1 NC_011415.1 hypothetical protein 3316057 7001572 ECSE_3187 Escherichia coli SE11 hypothetical protein YP_002294462.1 3315890 R 409438 CDS YP_002294463.1 209920379 7001573 complement(3316072..3317052) 1 NC_011415.1 transposase 3317052 7001573 ECSE_3188 Escherichia coli SE11 transposase YP_002294463.1 3316072 R 409438 CDS YP_002294464.1 209920380 7001574 complement(3317335..3318414) 1 NC_011415.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3318414 7001574 ECSE_3189 Escherichia coli SE11 fructose-bisphosphate aldolase YP_002294464.1 3317335 R 409438 CDS YP_002294465.1 209920381 7001575 complement(3318629..3319792) 1 NC_011415.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3319792 pgk 7001575 pgk Escherichia coli SE11 phosphoglycerate kinase YP_002294465.1 3318629 R 409438 CDS YP_002294466.1 209920382 7001576 complement(3319842..3320861) 1 NC_011415.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate; erythrose 4-phosphate dehydrogenase 3320861 7001576 ECSE_3191 Escherichia coli SE11 erythrose 4-phosphate dehydrogenase YP_002294466.1 3319842 R 409438 CDS YP_002294467.1 209920383 7001577 3321233..3321664 1 NC_011415.1 hypothetical protein 3321664 7001577 ECSE_3192 Escherichia coli SE11 hypothetical protein YP_002294467.1 3321233 D 409438 CDS YP_002294468.1 209920384 7001578 3321687..3322265 1 NC_011415.1 hypothetical protein 3322265 7001578 ECSE_3193 Escherichia coli SE11 hypothetical protein YP_002294468.1 3321687 D 409438 CDS YP_002294469.1 209920385 7001579 3322266..3322973 1 NC_011415.1 cobalt ABC transporter permease 3322973 7001579 ECSE_3194 Escherichia coli SE11 cobalt ABC transporter permease YP_002294469.1 3322266 D 409438 CDS YP_002294470.1 209920386 7001580 3322961..3323638 1 NC_011415.1 cobalt ABC transporter ATP-binding protein 3323638 7001580 ECSE_3195 Escherichia coli SE11 cobalt ABC transporter ATP-binding protein YP_002294470.1 3322961 D 409438 CDS YP_002294471.1 209920387 7001581 3323632..3324309 1 NC_011415.1 cobalt ABC transporter ATP-binding protein 3324309 7001581 ECSE_3196 Escherichia coli SE11 cobalt ABC transporter ATP-binding protein YP_002294471.1 3323632 D 409438 CDS YP_002294472.1 209920388 7001582 complement(3324281..3324994) 1 NC_011415.1 putative fructose transport system kinase 3324994 frcK 7001582 frcK Escherichia coli SE11 putative fructose transport system kinase YP_002294472.1 3324281 R 409438 CDS YP_002294473.1 209920389 7001583 complement(3324991..3325500) 1 NC_011415.1 putative DNA-binding transcriptional regulator 3325500 7001583 ECSE_3198 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002294473.1 3324991 R 409438 CDS YP_002294474.1 209920390 7001584 complement(3325522..3326487) 1 NC_011415.1 fructose-1,6-bisphosphatase II-like protein 3326487 7001584 ECSE_3199 Escherichia coli SE11 fructose-1,6-bisphosphatase II-like protein YP_002294474.1 3325522 R 409438 CDS YP_002294475.1 209920391 7001585 complement(3326484..3327761) 1 NC_011415.1 putative oxidoreductase 3327761 7001585 ECSE_3200 Escherichia coli SE11 putative oxidoreductase YP_002294475.1 3326484 R 409438 CDS YP_002294476.1 209920392 7001586 complement(3327776..3329164) 1 NC_011415.1 PTS system mannitol-specific IIBC components 3329164 7001586 ECSE_3201 Escherichia coli SE11 PTS system mannitol-specific IIBC components YP_002294476.1 3327776 R 409438 CDS YP_002294477.1 209920393 7001587 complement(3329192..3329635) 1 NC_011415.1 TolM; with CmtA (IIBC), CmtB possibly forms the mannitol-like permease component of the cryptic mannitol phosphotransferase system, which phosphorylates and transports various carbohydrates and polyhydric alcohols in Escherichia coli; cytoplasmic protein; putative mannitol phosphotransferase subunit EIIA 3329635 cmtB 7001587 cmtB Escherichia coli SE11 putative mannitol phosphotransferase subunit EIIA YP_002294477.1 3329192 R 409438 CDS YP_002294478.1 209920394 7001588 complement(3329949..3331940) 1 NC_011415.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 3331940 7001588 ECSE_3203 Escherichia coli SE11 transketolase YP_002294478.1 3329949 R 409438 CDS YP_002294479.1 209920395 7001589 3332092..3332976 1 NC_011415.1 hypothetical protein 3332976 7001589 ECSE_3204 Escherichia coli SE11 hypothetical protein YP_002294479.1 3332092 D 409438 CDS YP_002294480.1 209920396 7001590 complement(3333182..3334102) 1 NC_011415.1 catalyzes the formation of putrescine from agmatine; agmatinase 3334102 7001590 ECSE_3205 Escherichia coli SE11 agmatinase YP_002294480.1 3333182 R 409438 CDS YP_002294481.1 209920397 7001591 complement(3334238..3334969) 1 NC_011415.1 hypothetical protein 3334969 7001591 ECSE_3206 Escherichia coli SE11 hypothetical protein YP_002294481.1 3334238 R 409438 CDS YP_002294482.1 209920398 7001592 complement(3335115..3337091) 1 NC_011415.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 3337091 7001592 ECSE_3207 Escherichia coli SE11 arginine decarboxylase YP_002294482.1 3335115 R 409438 CDS YP_002294483.1 209920399 7001593 complement(3337100..3337246) 1 NC_011415.1 hypothetical protein 3337246 7001593 ECSE_3208 Escherichia coli SE11 hypothetical protein YP_002294483.1 3337100 R 409438 CDS YP_002294484.1 209920400 7001594 complement(3337579..3337830) 1 NC_011415.1 hypothetical protein 3337830 7001594 ECSE_3209 Escherichia coli SE11 hypothetical protein YP_002294484.1 3337579 R 409438 CDS YP_002294485.1 209920401 7001595 3337886..3339040 1 NC_011415.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 3339040 7001595 ECSE_3210 Escherichia coli SE11 S-adenosylmethionine synthetase YP_002294485.1 3337886 D 409438 CDS YP_002294486.1 209920402 7001596 3339476..3340870 1 NC_011415.1 galactose-proton symporter 3340870 7001596 ECSE_3211 Escherichia coli SE11 galactose-proton symporter YP_002294486.1 3339476 D 409438 CDS YP_002294487.1 209920403 7001597 3340947..3341444 1 NC_011415.1 hypothetical protein 3341444 7001597 ECSE_3212 Escherichia coli SE11 hypothetical protein YP_002294487.1 3340947 D 409438 CDS YP_002294488.1 209920404 7001598 3341539..3342246 1 NC_011415.1 endonuclease I 3342246 7001598 ECSE_3213 Escherichia coli SE11 endonuclease I YP_002294488.1 3341539 D 409438 CDS YP_002294489.1 209920405 7001599 3342326..3343057 1 NC_011415.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3343057 7001599 ECSE_3214 Escherichia coli SE11 16S ribosomal RNA methyltransferase RsmE YP_002294489.1 3342326 D 409438 CDS YP_002294490.1 209920406 7001600 3343070..3344020 1 NC_011415.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 3344020 7001600 ECSE_3215 Escherichia coli SE11 glutathione synthetase YP_002294490.1 3343070 D 409438 CDS YP_002294491.1 209920407 7001601 3344129..3344692 1 NC_011415.1 hypothetical protein 3344692 7001601 ECSE_3216 Escherichia coli SE11 hypothetical protein YP_002294491.1 3344129 D 409438 CDS YP_002294492.1 209920408 7001602 3344692..3345108 1 NC_011415.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3345108 7001602 ECSE_3217 Escherichia coli SE11 Holliday junction resolvase-like protein YP_002294492.1 3344692 D 409438 CDS YP_002294493.1 209920409 7001603 complement(3345292..3346272) 1 NC_011415.1 putative transport protein 3346272 7001603 ECSE_3218 Escherichia coli SE11 putative transport protein YP_002294493.1 3345292 R 409438 CDS YP_002294494.1 209920410 7001604 3346290..3346994 1 NC_011415.1 hypothetical protein 3346994 7001604 ECSE_3219 Escherichia coli SE11 hypothetical protein YP_002294494.1 3346290 D 409438 CDS YP_002294495.1 209920411 7001605 3347012..3347578 1 NC_011415.1 hypothetical protein 3347578 7001605 ECSE_3220 Escherichia coli SE11 hypothetical protein YP_002294495.1 3347012 D 409438 CDS YP_002294496.1 209920412 7001606 3347575..3347865 1 NC_011415.1 hypothetical protein 3347865 7001606 ECSE_3221 Escherichia coli SE11 hypothetical protein YP_002294496.1 3347575 D 409438 CDS YP_002294497.1 209920413 7001607 3347873..3348466 1 NC_011415.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 3348466 7001607 ECSE_3222 Escherichia coli SE11 putative deoxyribonucleotide triphosphate pyrophosphatase YP_002294497.1 3347873 D 409438 CDS YP_002294498.1 209920414 7001608 3348459..3349595 1 NC_011415.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3349595 7001608 ECSE_3223 Escherichia coli SE11 coproporphyrinogen III oxidase YP_002294498.1 3348459 D 409438 CDS YP_002294499.1 209920415 7001609 complement(3349750..3350757) 1 NC_011415.1 hypothetical protein 3350757 7001609 ECSE_3224 Escherichia coli SE11 hypothetical protein YP_002294499.1 3349750 R 409438 CDS YP_002294500.1 209920416 7001610 complement(3350874..3351920) 1 NC_011415.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II 3351920 ansB 7001610 ansB Escherichia coli SE11 L-asparaginase II YP_002294500.1 3350874 R 409438 CDS YP_002294501.1 209920417 7001611 complement(3352096..3352815) 1 NC_011415.1 hypothetical protein 3352815 7001611 ECSE_3226 Escherichia coli SE11 hypothetical protein YP_002294501.1 3352096 R 409438 CDS YP_002294502.1 209920418 7001612 complement(3352836..3352976) 1 NC_011415.1 hypothetical protein 3352976 7001612 ECSE_3227 Escherichia coli SE11 hypothetical protein YP_002294502.1 3352836 R 409438 CDS YP_002294503.1 209920419 7001613 complement(3352999..3353325) 1 NC_011415.1 hypothetical protein 3353325 7001613 ECSE_3228 Escherichia coli SE11 hypothetical protein YP_002294503.1 3352999 R 409438 CDS YP_002294504.1 209920420 7001614 complement(3353325..3354044) 1 NC_011415.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 3354044 trmB 7001614 trmB Escherichia coli SE11 tRNA (guanine-N(7)-)-methyltransferase YP_002294504.1 3353325 R 409438 CDS YP_002294505.1 209920421 7001615 3354205..3355257 1 NC_011415.1 adenine DNA glycosylase 3355257 7001615 ECSE_3230 Escherichia coli SE11 adenine DNA glycosylase YP_002294505.1 3354205 D 409438 CDS YP_002294506.1 209920422 7001616 3355285..3355560 1 NC_011415.1 hypothetical protein 3355560 7001616 ECSE_3231 Escherichia coli SE11 hypothetical protein YP_002294506.1 3355285 D 409438 CDS YP_002294507.1 209920423 7001617 3355625..3356704 1 NC_011415.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 3356704 mltC 7001617 mltC Escherichia coli SE11 murein transglycosylase C YP_002294507.1 3355625 D 409438 CDS YP_002294508.1 209920424 7001618 3356906..3358162 1 NC_011415.1 nucleoside transport protein 3358162 7001618 ECSE_3233 Escherichia coli SE11 nucleoside transport protein YP_002294508.1 3356906 D 409438 CDS YP_002294509.1 209920425 7001619 complement(3358212..3360347) 1 NC_011415.1 ornithine decarboxylase 3360347 7001619 ECSE_3234 Escherichia coli SE11 ornithine decarboxylase YP_002294509.1 3358212 R 409438 CDS YP_002294510.1 209920426 7001620 3360745..3361452 1 NC_011415.1 putative transport protein 3361452 7001620 ECSE_3235 Escherichia coli SE11 putative transport protein YP_002294510.1 3360745 D 409438 CDS YP_002294511.1 209920427 7003099 complement(3361782..3362318) 1 NC_011415.1 putative general secretion pathway protein YghD 3362318 7003099 ECSE_3236 Escherichia coli SE11 putative general secretion pathway protein YghD YP_002294511.1 3361782 R 409438 CDS YP_002294512.1 209920428 7001622 complement(3362320..3363498) 1 NC_011415.1 similar to general secretory pathway protein L; GspL-like protein 3363498 7001622 ECSE_3237 Escherichia coli SE11 GspL-like protein YP_002294512.1 3362320 R 409438 CDS YP_002294513.1 209920429 7001623 complement(3363495..3364472) 1 NC_011415.1 putative type II secretion protein 3364472 7001623 ECSE_3238 Escherichia coli SE11 putative type II secretion protein YP_002294513.1 3363495 R 409438 CDS YP_002294514.1 209920430 7001624 complement(3364475..3365038) 1 NC_011415.1 putative type II secretion protein 3365038 7001624 ECSE_3239 Escherichia coli SE11 putative type II secretion protein YP_002294514.1 3364475 R 409438 CDS YP_002294515.1 209920431 7001625 complement(3365071..3365442) 1 NC_011415.1 putative type II secretion protein 3365442 7001625 ECSE_3240 Escherichia coli SE11 putative type II secretion protein YP_002294515.1 3365071 R 409438 CDS YP_002294516.1 209920432 7001626 complement(3365439..3365969) 1 NC_011415.1 putative type II secretion protein 3365969 7001626 ECSE_3241 Escherichia coli SE11 putative type II secretion protein YP_002294516.1 3365439 R 409438 CDS YP_002294517.1 209920433 7001627 complement(3366006..3366461) 1 NC_011415.1 putative type II secretion protein 3366461 7001627 ECSE_3242 Escherichia coli SE11 putative type II secretion protein YP_002294517.1 3366006 R 409438 CDS YP_002294518.1 209920434 7001628 complement(3366478..3367701) 1 NC_011415.1 putative type II secretion protein 3367701 7001628 ECSE_3243 Escherichia coli SE11 putative type II secretion protein YP_002294518.1 3366478 R 409438 CDS YP_002294519.1 209920435 7001629 complement(3367701..3369194) 1 NC_011415.1 putative type II secretion protein 3369194 7001629 ECSE_3244 Escherichia coli SE11 putative type II secretion protein YP_002294519.1 3367701 R 409438 CDS YP_002294520.1 209920436 7001630 complement(3369194..3371254) 1 NC_011415.1 putative type II secretion protein 3371254 7001630 ECSE_3245 Escherichia coli SE11 putative type II secretion protein YP_002294520.1 3369194 R 409438 CDS YP_002294521.1 209920437 7001631 complement(3371284..3372114) 1 NC_011415.1 part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm; putative type II secretion protein GspC 3372114 7001631 ECSE_3246 Escherichia coli SE11 putative type II secretion protein GspC YP_002294521.1 3371284 R 409438 CDS YP_002294522.1 209920438 7001632 complement(3372261..3372671) 1 NC_011415.1 hypothetical protein 3372671 7001632 ECSE_3247 Escherichia coli SE11 hypothetical protein YP_002294522.1 3372261 R 409438 CDS YP_002294523.1 209920439 7001633 complement(3372737..3373546) 1 NC_011415.1 prepilin peptidase 3373546 7001633 ECSE_3248 Escherichia coli SE11 prepilin peptidase YP_002294523.1 3372737 R 409438 CDS YP_002294524.1 209920440 7001634 complement(3373686..3378254) 1 NC_011415.1 hypothetical protein 3378254 7001634 ECSE_3249 Escherichia coli SE11 hypothetical protein YP_002294524.1 3373686 R 409438 CDS YP_002294525.1 209920441 7001635 3378405..3378614 1 NC_011415.1 hypothetical protein 3378614 7001635 ECSE_3250 Escherichia coli SE11 hypothetical protein YP_002294525.1 3378405 D 409438 CDS YP_002294526.1 209920442 7001636 complement(3378603..3378725) 1 NC_011415.1 hypothetical protein 3378725 7001636 ECSE_3251 Escherichia coli SE11 hypothetical protein YP_002294526.1 3378603 R 409438 CDS YP_002294527.1 209920443 7001637 complement(3378740..3380422) 1 NC_011415.1 glycolate transporter 3380422 7001637 ECSE_3252 Escherichia coli SE11 glycolate transporter YP_002294527.1 3378740 R 409438 CDS YP_002294528.1 209920444 7001638 complement(3380778..3382949) 1 NC_011415.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3382949 7001638 ECSE_3253 Escherichia coli SE11 malate synthase G YP_002294528.1 3380778 R 409438 CDS YP_002294529.1 209920445 7001639 complement(3382971..3383375) 1 NC_011415.1 hypothetical protein 3383375 7001639 ECSE_3254 Escherichia coli SE11 hypothetical protein YP_002294529.1 3382971 R 409438 CDS YP_002294530.1 209920446 7001640 complement(3383380..3384603) 1 NC_011415.1 glycolate oxidase iron-sulfur subunit 3384603 glcF 7001640 glcF Escherichia coli SE11 glycolate oxidase iron-sulfur subunit YP_002294530.1 3383380 R 409438 CDS YP_002294531.1 209920447 7001641 complement(3384614..3385666) 1 NC_011415.1 glycolate oxidase FAD binding subunit 3385666 glcE 7001641 glcE Escherichia coli SE11 glycolate oxidase FAD binding subunit YP_002294531.1 3384614 R 409438 CDS YP_002294532.1 209920448 7001642 complement(3385666..3387165) 1 NC_011415.1 glycolate oxidase subunit GlcD 3387165 7001642 ECSE_3257 Escherichia coli SE11 glycolate oxidase subunit GlcD YP_002294532.1 3385666 R 409438 CDS YP_002294533.1 209920449 7001643 3387416..3388180 1 NC_011415.1 DNA-binding transcriptional regulator GlcC 3388180 7001643 ECSE_3258 Escherichia coli SE11 DNA-binding transcriptional regulator GlcC YP_002294533.1 3387416 D 409438 CDS YP_002294534.1 209920450 7001644 complement(3388187..3389329) 1 NC_011415.1 hypothetical protein 3389329 7001644 ECSE_3259 Escherichia coli SE11 hypothetical protein YP_002294534.1 3388187 R 409438 CDS YP_002294535.1 209920451 7001645 3389700..3391421 1 NC_011415.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 3391421 7001645 ECSE_3260 Escherichia coli SE11 acyl-CoA synthetase YP_002294535.1 3389700 D 409438 CDS YP_002294536.1 209920452 7001646 3391418..3392332 1 NC_011415.1 hypothetical protein 3392332 7001646 ECSE_3261 Escherichia coli SE11 hypothetical protein YP_002294536.1 3391418 D 409438 CDS YP_002294537.1 209920453 7001647 3392364..3392612 1 NC_011415.1 hypothetical protein 3392612 7001647 ECSE_3262 Escherichia coli SE11 hypothetical protein YP_002294537.1 3392364 D 409438 CDS YP_002294538.1 209920454 7001648 3392612..3393784 1 NC_011415.1 hypothetical protein 3393784 7001648 ECSE_3263 Escherichia coli SE11 hypothetical protein YP_002294538.1 3392612 D 409438 CDS YP_002294539.1 209920455 7001649 complement(3393820..3394899) 1 NC_011415.1 hypothetical protein 3394899 7001649 ECSE_3264 Escherichia coli SE11 hypothetical protein YP_002294539.1 3393820 R 409438 CDS YP_002294540.1 209920456 7001650 complement(3394896..3395966) 1 NC_011415.1 hypothetical protein 3395966 7001650 ECSE_3265 Escherichia coli SE11 hypothetical protein YP_002294540.1 3394896 R 409438 CDS YP_002294541.1 209920457 7001651 complement(3395997..3396557) 1 NC_011415.1 hypothetical protein 3396557 7001651 ECSE_3266 Escherichia coli SE11 hypothetical protein YP_002294541.1 3395997 R 409438 CDS YP_002294542.1 209920458 7001652 complement(3396569..3397393) 1 NC_011415.1 hypothetical protein 3397393 7001652 ECSE_3267 Escherichia coli SE11 hypothetical protein YP_002294542.1 3396569 R 409438 CDS YP_002294543.1 209920459 7001653 complement(3397393..3398742) 1 NC_011415.1 hypothetical protein 3398742 7001653 ECSE_3268 Escherichia coli SE11 hypothetical protein YP_002294543.1 3397393 R 409438 CDS YP_002294544.1 209920460 7001654 complement(3398788..3399546) 1 NC_011415.1 hypothetical protein 3399546 7001654 ECSE_3269 Escherichia coli SE11 hypothetical protein YP_002294544.1 3398788 R 409438 CDS YP_002294545.1 209920461 7001655 complement(3399578..3400291) 1 NC_011415.1 hypothetical protein 3400291 7001655 ECSE_3270 Escherichia coli SE11 hypothetical protein YP_002294545.1 3399578 R 409438 CDS YP_002294546.1 209920462 7001656 3400465..3401157 1 NC_011415.1 hypothetical protein 3401157 7001656 ECSE_3271 Escherichia coli SE11 hypothetical protein YP_002294546.1 3400465 D 409438 CDS YP_002294547.1 209920463 7001657 complement(3401206..3402705) 1 NC_011415.1 phosphate transport protein 3402705 7001657 ECSE_3272 Escherichia coli SE11 phosphate transport protein YP_002294547.1 3401206 R 409438 CDS YP_002294548.1 209920464 7001658 complement(3402997..3404856) 1 NC_011415.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 3404856 7001658 ECSE_3273 Escherichia coli SE11 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase YP_002294548.1 3402997 R 409438 CDS YP_002294549.1 209920465 7001659 3405013..3405927 1 NC_011415.1 YghU; B2989; one of eight putative glutathione transferase proteins from E. coli; putative glutathione S-transferase YghU 3405927 7001659 ECSE_3274 Escherichia coli SE11 putative glutathione S-transferase YghU YP_002294549.1 3405013 D 409438 CDS YP_002294550.1 209920466 7001660 complement(3406050..3406298) 1 NC_011415.1 hydrogenase 2 accessory protein HypG 3406298 7001660 ECSE_3275 Escherichia coli SE11 hydrogenase 2 accessory protein HypG YP_002294550.1 3406050 R 409438 CDS YP_002294551.1 209920467 7001661 complement(3406311..3406652) 1 NC_011415.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein HybF 3406652 7001661 ECSE_3276 Escherichia coli SE11 hydrogenase nickel incorporation protein HybF YP_002294551.1 3406311 R 409438 CDS YP_002294552.1 209920468 7001662 complement(3406645..3407133) 1 NC_011415.1 hydrogenase 2-specific chaperone 3407133 7001662 ECSE_3277 Escherichia coli SE11 hydrogenase 2-specific chaperone YP_002294552.1 3406645 R 409438 CDS YP_002294553.1 209920469 7001663 complement(3407126..3407620) 1 NC_011415.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 3407620 hybD 7001663 hybD Escherichia coli SE11 hydrogenase 2 maturation endopeptidase YP_002294553.1 3407126 R 409438 CDS YP_002294554.1 209920470 7001664 complement(3407620..3409323) 1 NC_011415.1 involved in hydrogen uptake; hydrogenase 2 large subunit 3409323 7001664 ECSE_3279 Escherichia coli SE11 hydrogenase 2 large subunit YP_002294554.1 3407620 R 409438 CDS YP_002294555.1 209920471 7001665 complement(3409320..3410498) 1 NC_011415.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 3410498 7001665 ECSE_3280 Escherichia coli SE11 putative hydrogenase 2 b cytochrome subunit YP_002294555.1 3409320 R 409438 CDS YP_002294556.1 209920472 7001666 complement(3410488..3411474) 1 NC_011415.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 3411474 7001666 ECSE_3281 Escherichia coli SE11 hydrogenase 2 protein HybA YP_002294556.1 3410488 R 409438 CDS YP_002294557.1 209920473 7001667 complement(3411477..3412595) 1 NC_011415.1 involved in hydrogen uptake; hydrogenase 2 small subunit 3412595 7001667 ECSE_3282 Escherichia coli SE11 hydrogenase 2 small subunit YP_002294557.1 3411477 R 409438 CDS YP_002294558.1 209920474 7001668 complement(3412784..3413071) 1 NC_011415.1 hypothetical protein 3413071 7001668 ECSE_3283 Escherichia coli SE11 hypothetical protein YP_002294558.1 3412784 R 409438 CDS YP_002294559.1 209920475 7001669 complement(3413190..3414116) 1 NC_011415.1 hypothetical protein 3414116 7001669 ECSE_3284 Escherichia coli SE11 hypothetical protein YP_002294559.1 3413190 R 409438 CDS YP_002294560.1 209920476 7001670 3414234..3415274 1 NC_011415.1 aldo-keto reductase 3415274 7001670 ECSE_3285 Escherichia coli SE11 aldo-keto reductase YP_002294560.1 3414234 D 409438 CDS YP_002294561.1 209920477 7001671 complement(3415314..3415808) 1 NC_011415.1 hypothetical protein 3415808 7001671 ECSE_3286 Escherichia coli SE11 hypothetical protein YP_002294561.1 3415314 R 409438 CDS YP_002294562.1 209920478 7001672 3415999..3416883 1 NC_011415.1 oxidoreductase 3416883 7001672 ECSE_3287 Escherichia coli SE11 oxidoreductase YP_002294562.1 3415999 D 409438 CDS YP_002294563.1 209920479 7001673 complement(3416956..3417147) 1 NC_011415.1 hypothetical protein 3417147 7001673 ECSE_3288 Escherichia coli SE11 hypothetical protein YP_002294563.1 3416956 R 409438 CDS YP_002294564.1 209920480 7001674 complement(3417155..3417580) 1 NC_011415.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbD 3417580 7001674 ECSE_3289 Escherichia coli SE11 biopolymer transport protein ExbD YP_002294564.1 3417155 R 409438 CDS YP_002294565.1 209920481 7001675 complement(3417587..3418321) 1 NC_011415.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell; biopolymer transport protein ExbB 3418321 7001675 ECSE_3290 Escherichia coli SE11 biopolymer transport protein ExbB YP_002294565.1 3417587 R 409438 CDS YP_002294566.1 209920482 7001676 complement(3418314..3418469) 1 NC_011415.1 hypothetical protein 3418469 7001676 ECSE_3291 Escherichia coli SE11 hypothetical protein YP_002294566.1 3418314 R 409438 CDS YP_002294567.1 209920483 7001677 3418573..3419760 1 NC_011415.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 3419760 7001677 ECSE_3292 Escherichia coli SE11 cystathionine beta-lyase YP_002294567.1 3418573 D 409438 CDS YP_002294568.1 209920484 7001678 3419900..3420559 1 NC_011415.1 hypothetical protein 3420559 7001678 ECSE_3293 Escherichia coli SE11 hypothetical protein YP_002294568.1 3419900 D 409438 CDS YP_002294569.1 209920485 7001679 complement(3420599..3421555) 1 NC_011415.1 putative regulator 3421555 7001679 ECSE_3294 Escherichia coli SE11 putative regulator YP_002294569.1 3420599 R 409438 CDS YP_002294570.1 209920486 7001680 3421692..3422855 1 NC_011415.1 putative oxidoreductase 3422855 7001680 ECSE_3295 Escherichia coli SE11 putative oxidoreductase YP_002294570.1 3421692 D 409438 CDS YP_002294571.1 209920487 7001681 3422960..3423787 1 NC_011415.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate; 2,5-diketo-D-gluconate reductase A 3423787 dkgA 7001681 dkgA Escherichia coli SE11 2,5-diketo-D-gluconate reductase A YP_002294571.1 3422960 D 409438 CDS YP_002294572.1 209920488 7001682 3423987..3424913 1 NC_011415.1 hypothetical protein 3424913 7001682 ECSE_3297 Escherichia coli SE11 hypothetical protein YP_002294572.1 3423987 D 409438 CDS YP_002294573.1 209920489 7001683 3424964..3425221 1 NC_011415.1 putative outer membrane lipoprotein 3425221 7001683 ECSE_3298 Escherichia coli SE11 putative outer membrane lipoprotein YP_002294573.1 3424964 D 409438 CDS YP_002294574.1 209920490 7001684 complement(3425264..3427483) 1 NC_011415.1 hypothetical protein 3427483 7001684 ECSE_3299 Escherichia coli SE11 hypothetical protein YP_002294574.1 3425264 R 409438 CDS YP_002294575.1 209920491 7001685 complement(3427594..3429006) 1 NC_011415.1 repressor protein for FtsI 3429006 7001685 ECSE_3300 Escherichia coli SE11 repressor protein for FtsI YP_002294575.1 3427594 R 409438 CDS YP_002294576.1 209920492 7001686 complement(3429081..3429818) 1 NC_011415.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 3429818 7001686 ECSE_3301 Escherichia coli SE11 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002294576.1 3429081 R 409438 CDS YP_002294577.1 209920493 7001687 complement(3429866..3430021) 1 NC_011415.1 hypothetical protein 3430021 7001687 ECSE_3302 Escherichia coli SE11 hypothetical protein YP_002294577.1 3429866 R 409438 CDS YP_002294578.1 209920494 7001688 complement(3430052..3432310) 1 NC_011415.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 3432310 7001688 ECSE_3303 Escherichia coli SE11 DNA topoisomerase IV subunit A YP_002294578.1 3430052 R 409438 CDS YP_002294579.1 209920495 7001689 complement(3432856..3433338) 1 NC_011415.1 hypothetical protein 3433338 7001689 ECSE_3304 Escherichia coli SE11 hypothetical protein YP_002294579.1 3432856 R 409438 CDS YP_002294580.1 209920496 7001690 complement(3433391..3433783) 1 NC_011415.1 hypothetical protein 3433783 7001690 ECSE_3305 Escherichia coli SE11 hypothetical protein YP_002294580.1 3433391 R 409438 CDS YP_002294581.1 209920497 7001691 3433935..3434594 1 NC_011415.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; DNA-binding transcriptional regulator QseB 3434594 7001691 ECSE_3306 Escherichia coli SE11 DNA-binding transcriptional regulator QseB YP_002294581.1 3433935 D 409438 CDS YP_002294582.1 209920498 7001692 3434591..3435940 1 NC_011415.1 sensor protein QseC 3435940 7001692 ECSE_3307 Escherichia coli SE11 sensor protein QseC YP_002294582.1 3434591 D 409438 CDS YP_002294583.1 209920499 7001693 complement(3435986..3436318) 1 NC_011415.1 hypothetical protein 3436318 7001693 ECSE_3308 Escherichia coli SE11 hypothetical protein YP_002294583.1 3435986 R 409438 CDS YP_002294584.1 209920500 7001694 3436637..3437218 1 NC_011415.1 modulator of drug activity 3437218 7001694 ECSE_3309 Escherichia coli SE11 modulator of drug activity YP_002294584.1 3436637 D 409438 CDS YP_002294585.1 209920501 7001695 3437249..3437563 1 NC_011415.1 hypothetical protein 3437563 7001695 ECSE_3310 Escherichia coli SE11 hypothetical protein YP_002294585.1 3437249 D 409438 CDS YP_002294586.1 209920502 7001696 complement(3437611..3439503) 1 NC_011415.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 3439503 7001696 ECSE_3311 Escherichia coli SE11 DNA topoisomerase IV subunit B YP_002294586.1 3437611 R 409438 CDS YP_002294587.1 209920503 7001697 complement(3439532..3440113) 1 NC_011415.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate; esterase YqiA 3440113 7001697 ECSE_3312 Escherichia coli SE11 esterase YqiA YP_002294587.1 3439532 R 409438 CDS YP_002294588.1 209920504 7001698 complement(3440113..3440940) 1 NC_011415.1 cyclic 3',5'-adenosine monophosphate phosphodiesterase 3440940 7001698 ECSE_3313 Escherichia coli SE11 cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_002294588.1 3440113 R 409438 CDS YP_002294589.1 209920505 7001699 complement(3440965..3441387) 1 NC_011415.1 hypothetical protein 3441387 7001699 ECSE_3314 Escherichia coli SE11 hypothetical protein YP_002294589.1 3440965 R 409438 CDS YP_002294590.1 209920506 7001700 complement(3441388..3442017) 1 NC_011415.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose pyrophosphatase NudF 3442017 nudF 7001700 nudF Escherichia coli SE11 ADP-ribose pyrophosphatase NudF YP_002294590.1 3441388 R 409438 CDS YP_002294591.1 209920507 7001701 3442216..3443703 1 NC_011415.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 3443703 tolC 7001701 tolC Escherichia coli SE11 outer membrane channel protein YP_002294591.1 3442216 D 409438 CDS YP_002294592.1 209920508 7001702 3443851..3444522 1 NC_011415.1 hypothetical protein 3444522 7001702 ECSE_3317 Escherichia coli SE11 hypothetical protein YP_002294592.1 3443851 D 409438 CDS YP_002294593.1 209920509 7001703 3444528..3445688 1 NC_011415.1 putative glutathionylspermidine synthase 3445688 7001703 ECSE_3318 Escherichia coli SE11 putative glutathionylspermidine synthase YP_002294593.1 3444528 D 409438 CDS YP_002294594.1 209920510 7001704 complement(3445726..3446541) 1 NC_011415.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; hypothetical protein 3446541 7001704 ECSE_3319 Escherichia coli SE11 hypothetical protein YP_002294594.1 3445726 R 409438 CDS YP_002294595.1 209920511 7001705 3446657..3447430 1 NC_011415.1 zinc transporter ZupT 3447430 7001705 ECSE_3320 Escherichia coli SE11 zinc transporter ZupT YP_002294595.1 3446657 D 409438 CDS YP_002294596.1 209920512 7001706 complement(3447488..3447658) 1 NC_011415.1 hypothetical protein 3447658 7001706 ECSE_3321 Escherichia coli SE11 hypothetical protein YP_002294596.1 3447488 R 409438 CDS YP_002294597.1 209920513 7001707 complement(3447919..3448572) 1 NC_011415.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 3448572 ribB 7001707 ribB Escherichia coli SE11 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002294597.1 3447919 R 409438 CDS YP_002294598.1 209920514 7001708 3448886..3449236 1 NC_011415.1 hypothetical protein 3449236 7001708 ECSE_3323 Escherichia coli SE11 hypothetical protein YP_002294598.1 3448886 D 409438 CDS YP_002294599.1 209920515 7001709 3449519..3450070 1 NC_011415.1 putative fimbrial protein 3450070 7001709 ECSE_3324 Escherichia coli SE11 putative fimbrial protein YP_002294599.1 3449519 D 409438 CDS YP_002294600.1 209920516 7001710 3450166..3452634 1 NC_011415.1 putative fimbrial usher protein 3452634 7001710 ECSE_3325 Escherichia coli SE11 putative fimbrial usher protein YP_002294600.1 3450166 D 409438 CDS YP_002294601.1 209920517 7001711 3452641..3453399 1 NC_011415.1 putative fimbrial chaperone 3453399 7001711 ECSE_3326 Escherichia coli SE11 putative fimbrial chaperone YP_002294601.1 3452641 D 409438 CDS YP_002294602.1 209920518 7001712 3453401..3454465 1 NC_011415.1 hypothetical protein 3454465 7001712 ECSE_3327 Escherichia coli SE11 hypothetical protein YP_002294602.1 3453401 D 409438 CDS YP_002294603.1 209920519 7001713 complement(3454508..3454708) 1 NC_011415.1 Involved in glycogen synthesis. May be involved in glycogen priming; glycogen synthesis protein GlgS 3454708 7001713 ECSE_3328 Escherichia coli SE11 glycogen synthesis protein GlgS YP_002294603.1 3454508 R 409438 CDS YP_002294604.1 209920520 7001714 3454977..3455606 1 NC_011415.1 putative oxidoreductase 3455606 7001714 ECSE_3329 Escherichia coli SE11 putative oxidoreductase YP_002294604.1 3454977 D 409438 CDS YP_002294605.1 209920521 7001715 3455633..3457294 1 NC_011415.1 hypothetical protein 3457294 7001715 ECSE_3330 Escherichia coli SE11 hypothetical protein YP_002294605.1 3455633 D 409438 CDS YP_002294606.1 209920522 7001716 3457629..3458021 1 NC_011415.1 hypothetical protein 3458021 7001716 ECSE_3331 Escherichia coli SE11 hypothetical protein YP_002294606.1 3457629 D 409438 CDS YP_002294607.1 209920523 7001717 complement(3458088..3459521) 1 NC_011415.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3459521 7001717 ECSE_3332 Escherichia coli SE11 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_002294607.1 3458088 R 409438 CDS YP_002294608.1 209920524 7001718 complement(3459569..3462409) 1 NC_011415.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 3462409 7001718 ECSE_3333 Escherichia coli SE11 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_002294608.1 3459569 R 409438 CDS YP_002294609.1 209920525 7001719 complement(3462432..3463733) 1 NC_011415.1 hypothetical protein 3463733 7001719 ECSE_3334 Escherichia coli SE11 hypothetical protein YP_002294609.1 3462432 R 409438 CDS YP_002294610.1 209920526 7001720 3463975..3464595 1 NC_011415.1 putative signal transduction protein 3464595 7001720 ECSE_3335 Escherichia coli SE11 putative signal transduction protein YP_002294610.1 3463975 D 409438 CDS YP_002294611.1 209920527 7001721 3464659..3465897 1 NC_011415.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 3465897 cca 7001721 cca Escherichia coli SE11 multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_002294611.1 3464659 D 409438 CDS YP_002294612.1 209920528 7001722 complement(3466060..3466881) 1 NC_011415.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 3466881 7001722 ECSE_3337 Escherichia coli SE11 undecaprenyl pyrophosphate phosphatase YP_002294612.1 3466060 R 409438 CDS YP_002294613.1 209920529 7001723 complement(3466971..3467342) 1 NC_011415.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3467342 folB 7001723 folB Escherichia coli SE11 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase YP_002294613.1 3466971 R 409438 CDS YP_002294614.1 209920530 7001724 3467444..3468061 1 NC_011415.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 3468061 7001724 ECSE_3339 Escherichia coli SE11 putative glycerol-3-phosphate acyltransferase PlsY YP_002294614.1 3467444 D 409438 CDS YP_002294615.1 209920531 7001725 complement(3468074..3469006) 1 NC_011415.1 activates expression of genes required for L-tartrate-dependent anaerobic growth on glycerol; transcriptional activator TtdR 3469006 7001725 ECSE_3340 Escherichia coli SE11 transcriptional activator TtdR YP_002294615.1 3468074 R 409438 CDS YP_002294616.1 209920532 7001726 3469025..3469159 1 NC_011415.1 hypothetical protein 3469159 7001726 ECSE_3341 Escherichia coli SE11 hypothetical protein YP_002294616.1 3469025 D 409438 CDS YP_002294617.1 209920533 7001727 3469213..3470124 1 NC_011415.1 Involved in the tartrate degradation pathway; tartrate dehydratase subunit alpha 3470124 7001727 ECSE_3342 Escherichia coli SE11 tartrate dehydratase subunit alpha YP_002294617.1 3469213 D 409438 CDS YP_002294618.1 209920534 7001728 3470121..3470726 1 NC_011415.1 Involved in the tartrate degradation pathway; L(+)-tartrate dehydratase subunit beta 3470726 7001728 ECSE_3343 Escherichia coli SE11 L(+)-tartrate dehydratase subunit beta YP_002294618.1 3470121 D 409438 CDS YP_002294619.1 209920535 7001729 3470774..3472237 1 NC_011415.1 hypothetical protein 3472237 7001729 ECSE_3344 Escherichia coli SE11 hypothetical protein YP_002294619.1 3470774 D 409438 CDS YP_002294620.1 209920536 7001730 complement(3472280..3473293) 1 NC_011415.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 3473293 7001730 ECSE_3345 Escherichia coli SE11 putative DNA-binding/iron metalloprotein/AP endonuclease YP_002294620.1 3472280 R 409438 CDS YP_002294621.1 209920537 7001731 3473530..3473745 1 NC_011415.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3473745 rpsU 7001731 rpsU Escherichia coli SE11 30S ribosomal protein S21 YP_002294621.1 3473530 D 409438 CDS YP_002294622.1 209920538 7001732 3473856..3475601 1 NC_011415.1 synthesizes RNA primers at the replication forks; DNA primase 3475601 dnaG 7001732 dnaG Escherichia coli SE11 DNA primase YP_002294622.1 3473856 D 409438 CDS YP_002294623.1 209920539 7001733 3475615..3475737 1 NC_011415.1 hypothetical protein 3475737 7001733 ECSE_3348 Escherichia coli SE11 hypothetical protein YP_002294623.1 3475615 D 409438 CDS YP_002294624.1 209920540 7001734 3475796..3477637 1 NC_011415.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3477637 7001734 ECSE_3349 Escherichia coli SE11 RNA polymerase sigma factor RpoD YP_002294624.1 3475796 D 409438 CDS YP_002294625.1 209920541 7001735 complement(3477715..3478221) 1 NC_011415.1 G/U mismatch-specific DNA glycosylase 3478221 7001735 ECSE_3350 Escherichia coli SE11 G/U mismatch-specific DNA glycosylase YP_002294625.1 3477715 R 409438 CDS YP_002294626.1 209920542 7003100 complement(3478475..3479239) 1 NC_011415.1 hypothetical protein 3479239 7003100 ECSE_3351 Escherichia coli SE11 hypothetical protein YP_002294626.1 3478475 R 409438 CDS YP_002294627.1 209920543 7001737 3479527..3480150 1 NC_011415.1 hypothetical protein 3480150 7001737 ECSE_3352 Escherichia coli SE11 hypothetical protein YP_002294627.1 3479527 D 409438 CDS YP_002294628.1 209920544 7001738 complement(3480257..3481777) 1 NC_011415.1 aerotaxis sensor receptor 3481777 7001738 ECSE_3353 Escherichia coli SE11 aerotaxis sensor receptor YP_002294628.1 3480257 R 409438 CDS YP_002294629.1 209920545 7001739 3482285..3483574 1 NC_011415.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; putrescine--2-oxoglutarate aminotransferase 3483574 7001739 ECSE_3354 Escherichia coli SE11 putrescine--2-oxoglutarate aminotransferase YP_002294629.1 3482285 D 409438 CDS YP_002294630.1 209920546 7001740 complement(3483616..3483948) 1 NC_011415.1 hypothetical protein 3483948 7001740 ECSE_3355 Escherichia coli SE11 hypothetical protein YP_002294630.1 3483616 R 409438 CDS YP_002294631.1 209920547 7001741 3484167..3485150 1 NC_011415.1 DNA-binding transcriptional repressor EbgR 3485150 7001741 ECSE_3356 Escherichia coli SE11 DNA-binding transcriptional repressor EbgR YP_002294631.1 3484167 D 409438 CDS YP_002294632.1 209920548 7001742 3485334..3488426 1 NC_011415.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit alpha 3488426 ebgA 7001742 ebgA Escherichia coli SE11 cryptic beta-D-galactosidase subunit alpha YP_002294632.1 3485334 D 409438 CDS YP_002294633.1 209920549 7001743 3488423..3488872 1 NC_011415.1 in Escherichia coli this is the second beta-galactosidase system; cryptic beta-D-galactosidase subunit beta 3488872 ebgC 7001743 ebgC Escherichia coli SE11 cryptic beta-D-galactosidase subunit beta YP_002294633.1 3488423 D 409438 CDS YP_002294634.1 209920550 7001744 3488935..3490368 1 NC_011415.1 putative oxidoreductase 3490368 7001744 ECSE_3359 Escherichia coli SE11 putative oxidoreductase YP_002294634.1 3488935 D 409438 CDS YP_002294635.1 209920551 7001745 3490502..3491572 1 NC_011415.1 hypothetical protein 3491572 7001745 ECSE_3360 Escherichia coli SE11 hypothetical protein YP_002294635.1 3490502 D 409438 CDS YP_002294636.1 209920552 7001746 3491589..3493940 1 NC_011415.1 putative glycosyl hydrolase 3493940 7001746 ECSE_3361 Escherichia coli SE11 putative glycosyl hydrolase YP_002294636.1 3491589 D 409438 CDS YP_002294637.1 209920553 7001747 3494366..3496384 1 NC_011415.1 putative 2,4-dieonyl-CoA reductase 3496384 7001747 ECSE_3362 Escherichia coli SE11 putative 2,4-dieonyl-CoA reductase YP_002294637.1 3494366 D 409438 CDS YP_002294638.1 209920554 7001748 complement(3496429..3496845) 1 NC_011415.1 hypothetical protein 3496845 7001748 ECSE_3363 Escherichia coli SE11 hypothetical protein YP_002294638.1 3496429 R 409438 CDS YP_002294639.1 209920555 7001749 complement(3497116..3498252) 1 NC_011415.1 hypothetical protein 3498252 7001749 ECSE_3364 Escherichia coli SE11 hypothetical protein YP_002294639.1 3497116 R 409438 CDS YP_002294640.1 209920556 7001750 3498301..3498840 1 NC_011415.1 hypothetical protein 3498840 7001750 ECSE_3365 Escherichia coli SE11 hypothetical protein YP_002294640.1 3498301 D 409438 CDS YP_002294641.1 209920557 7001751 3498917..3499600 1 NC_011415.1 hypothetical protein 3499600 7001751 ECSE_3366 Escherichia coli SE11 hypothetical protein YP_002294641.1 3498917 D 409438 CDS YP_002294642.1 209920558 7001752 3499661..3500665 1 NC_011415.1 hypothetical protein 3500665 7001752 ECSE_3367 Escherichia coli SE11 hypothetical protein YP_002294642.1 3499661 D 409438 CDS YP_002294643.1 209920559 7001753 3500948..3501913 1 NC_011415.1 putative transport protein 3501913 7001753 ECSE_3368 Escherichia coli SE11 putative transport protein YP_002294643.1 3500948 D 409438 CDS YP_002294644.1 209920560 7001754 3502016..3502324 1 NC_011415.1 hypothetical protein 3502324 7001754 ECSE_3369 Escherichia coli SE11 hypothetical protein YP_002294644.1 3502016 D 409438 CDS YP_002294645.1 209920561 7001755 3502529..3503773 1 NC_011415.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3503773 7001755 ECSE_3370 Escherichia coli SE11 serine/threonine transporter SstT YP_002294645.1 3502529 D 409438 CDS YP_002294646.1 209920562 7001756 complement(3503778..3504329) 1 NC_011415.1 hypothetical protein 3504329 7001756 ECSE_3371 Escherichia coli SE11 hypothetical protein YP_002294646.1 3503778 R 409438 CDS YP_002294647.1 209920563 7001757 complement(3504412..3505899) 1 NC_011415.1 altronate hydrolase 3505899 7001757 ECSE_3372 Escherichia coli SE11 altronate hydrolase YP_002294647.1 3504412 R 409438 CDS YP_002294648.1 209920564 7001758 complement(3505914..3507326) 1 NC_011415.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3507326 7001758 ECSE_3373 Escherichia coli SE11 glucuronate isomerase YP_002294648.1 3505914 R 409438 CDS YP_002294649.1 209920565 7001759 3507809..3509107 1 NC_011415.1 putative transport protein 3509107 7001759 ECSE_3374 Escherichia coli SE11 putative transport protein YP_002294649.1 3507809 D 409438 CDS YP_002294650.1 209920566 7001760 complement(3509195..3510283) 1 NC_011415.1 putative fimbrial protein 3510283 7001760 ECSE_3375 Escherichia coli SE11 putative fimbrial protein YP_002294650.1 3509195 R 409438 CDS YP_002294651.1 209920567 7001761 complement(3510280..3512982) 1 NC_011415.1 putative fimbrial usher protein 3512982 7001761 ECSE_3376 Escherichia coli SE11 putative fimbrial usher protein YP_002294651.1 3510280 R 409438 CDS YP_002294652.1 209920568 7001762 complement(3513056..3513556) 1 NC_011415.1 putative fimbrial protein 3513556 7001762 ECSE_3377 Escherichia coli SE11 putative fimbrial protein YP_002294652.1 3513056 R 409438 CDS YP_002294653.1 209920569 7001763 complement(3513586..3514302) 1 NC_011415.1 putative fimbrial protein 3514302 7001763 ECSE_3378 Escherichia coli SE11 putative fimbrial protein YP_002294653.1 3513586 R 409438 CDS YP_002294654.1 209920570 7001764 3514598..3515374 1 NC_011415.1 regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.; DNA-binding transcriptional repressor ExuR 3515374 7001764 ECSE_3379 Escherichia coli SE11 DNA-binding transcriptional repressor ExuR YP_002294654.1 3514598 D 409438 CDS YP_002294655.1 209920571 7001765 3515719..3516381 1 NC_011415.1 hypothetical protein 3516381 7001765 ECSE_3380 Escherichia coli SE11 hypothetical protein YP_002294655.1 3515719 D 409438 CDS YP_002294656.1 209920572 7001766 3516385..3516768 1 NC_011415.1 hypothetical protein 3516768 7001766 ECSE_3381 Escherichia coli SE11 hypothetical protein YP_002294656.1 3516385 D 409438 CDS YP_002294657.1 209920573 7001767 3516915..3517283 1 NC_011415.1 hypothetical protein 3517283 7001767 ECSE_3382 Escherichia coli SE11 hypothetical protein YP_002294657.1 3516915 D 409438 CDS YP_002294658.1 209920574 7001768 3517321..3517626 1 NC_011415.1 hypothetical protein 3517626 7001768 ECSE_3383 Escherichia coli SE11 hypothetical protein YP_002294658.1 3517321 D 409438 CDS YP_002294659.1 209920575 7001769 3517629..3518033 1 NC_011415.1 hypothetical protein 3518033 7001769 ECSE_3384 Escherichia coli SE11 hypothetical protein YP_002294659.1 3517629 D 409438 CDS YP_002294660.1 209920576 7001770 3518023..3518322 1 NC_011415.1 hypothetical protein 3518322 7001770 ECSE_3385 Escherichia coli SE11 hypothetical protein YP_002294660.1 3518023 D 409438 CDS YP_002294661.1 209920577 7001771 3518418..3518900 1 NC_011415.1 hypothetical protein 3518900 7001771 ECSE_3386 Escherichia coli SE11 hypothetical protein YP_002294661.1 3518418 D 409438 CDS YP_002294662.1 209920578 7001772 3518970..3519956 1 NC_011415.1 putative transferase 3519956 7001772 ECSE_3387 Escherichia coli SE11 putative transferase YP_002294662.1 3518970 D 409438 CDS YP_002294663.1 209920579 7001773 3520016..3520165 1 NC_011415.1 hypothetical protein 3520165 7001773 ECSE_3388 Escherichia coli SE11 hypothetical protein YP_002294663.1 3520016 D 409438 CDS YP_002294664.1 209920580 7001774 3520249..3520614 1 NC_011415.1 hypothetical protein 3520614 7001774 ECSE_3389 Escherichia coli SE11 hypothetical protein YP_002294664.1 3520249 D 409438 CDS YP_002294665.1 209920581 7001775 3520856..3521212 1 NC_011415.1 putative cytochrome 3521212 7001775 ECSE_3390 Escherichia coli SE11 putative cytochrome YP_002294665.1 3520856 D 409438 CDS YP_002294666.1 209920582 7001776 complement(3521263..3522159) 1 NC_011415.1 putative transcriptional regulator 3522159 7001776 ECSE_3391 Escherichia coli SE11 putative transcriptional regulator YP_002294666.1 3521263 R 409438 CDS YP_002294667.1 209920583 7001777 3522264..3522965 1 NC_011415.1 hypothetical protein 3522965 7001777 ECSE_3392 Escherichia coli SE11 hypothetical protein YP_002294667.1 3522264 D 409438 CDS YP_002294668.1 209920584 7001778 3522988..3523152 1 NC_011415.1 hypothetical protein 3523152 7001778 ECSE_3393 Escherichia coli SE11 hypothetical protein YP_002294668.1 3522988 D 409438 CDS YP_002294669.1 209920585 7001779 complement(3523364..3524674) 1 NC_011415.1 hypothetical protein 3524674 7001779 ECSE_3394 Escherichia coli SE11 hypothetical protein YP_002294669.1 3523364 R 409438 CDS YP_002294670.1 209920586 7001780 complement(3524702..3526033) 1 NC_011415.1 putative transport protein 3526033 7001780 ECSE_3395 Escherichia coli SE11 putative transport protein YP_002294670.1 3524702 R 409438 CDS YP_002294671.1 209920587 7001781 complement(3526308..3527672) 1 NC_011415.1 L-serine dehydratase 3527672 7001781 ECSE_3396 Escherichia coli SE11 L-serine dehydratase YP_002294671.1 3526308 R 409438 CDS YP_002294672.1 209920588 7001782 complement(3527744..3528133) 1 NC_011415.1 hypothetical protein 3528133 7001782 ECSE_3397 Escherichia coli SE11 hypothetical protein YP_002294672.1 3527744 R 409438 CDS YP_002294673.1 209920589 7001783 complement(3528147..3530441) 1 NC_011415.1 putative formate acetyltransferase 3 3530441 7001783 ECSE_3398 Escherichia coli SE11 putative formate acetyltransferase 3 YP_002294673.1 3528147 R 409438 CDS YP_002294674.1 209920590 7001784 complement(3530475..3531683) 1 NC_011415.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism; propionate/acetate kinase 3531683 7001784 ECSE_3399 Escherichia coli SE11 propionate/acetate kinase YP_002294674.1 3530475 R 409438 CDS YP_002294675.1 209920591 7001785 complement(3531709..3533040) 1 NC_011415.1 involved in the import of threonine and serine in combination with the import of a proton; threonine/serine transporter TdcC 3533040 7001785 ECSE_3400 Escherichia coli SE11 threonine/serine transporter TdcC YP_002294675.1 3531709 R 409438 CDS YP_002294676.1 209920592 7001786 complement(3533062..3534051) 1 NC_011415.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 3534051 7001786 ECSE_3401 Escherichia coli SE11 threonine dehydratase YP_002294676.1 3533062 R 409438 CDS YP_002294677.1 209920593 7001787 complement(3534150..3535088) 1 NC_011415.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation; DNA-binding transcriptional activator TdcA 3535088 7001787 ECSE_3402 Escherichia coli SE11 DNA-binding transcriptional activator TdcA YP_002294677.1 3534150 R 409438 CDS YP_002294678.1 209920594 7001788 3535277..3535621 1 NC_011415.1 participates in controlling the expression of several structural genes for the enzyme threonine dehydratase; TdcR activates the tdcABCDEFG operon; DNA-binding transcriptional activator TdcR 3535621 7001788 ECSE_3403 Escherichia coli SE11 DNA-binding transcriptional activator TdcR YP_002294678.1 3535277 D 409438 CDS YP_002294679.1 209920595 7001789 3535856..3536416 1 NC_011415.1 hypothetical protein 3536416 7001789 ECSE_3404 Escherichia coli SE11 hypothetical protein YP_002294679.1 3535856 D 409438 CDS YP_002294680.1 209920596 7001790 3536438..3537625 1 NC_011415.1 hypothetical protein 3537625 7001790 ECSE_3405 Escherichia coli SE11 hypothetical protein YP_002294680.1 3536438 D 409438 CDS YP_002294681.1 209920597 7001791 3537686..3537850 1 NC_011415.1 hypothetical protein 3537850 7001791 ECSE_3406 Escherichia coli SE11 hypothetical protein YP_002294681.1 3537686 D 409438 CDS YP_002294682.1 209920598 7001792 3538022..3538501 1 NC_011415.1 hypothetical protein 3538501 7001792 ECSE_3407 Escherichia coli SE11 hypothetical protein YP_002294682.1 3538022 D 409438 CDS YP_002294683.1 209920599 7001793 complement(3538429..3539574) 1 NC_011415.1 glycerate kinase I 3539574 7001793 ECSE_3408 Escherichia coli SE11 glycerate kinase I YP_002294683.1 3538429 R 409438 CDS YP_002294684.1 209920600 7001794 complement(3539671..3540555) 1 NC_011415.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3540555 garR 7001794 garR Escherichia coli SE11 tartronate semialdehyde reductase YP_002294684.1 3539671 R 409438 CDS YP_002294685.1 209920601 7001795 complement(3540591..3541361) 1 NC_011415.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3541361 7001795 ECSE_3410 Escherichia coli SE11 alpha-dehydro-beta-deoxy-D-glucarate aldolase YP_002294685.1 3540591 R 409438 CDS YP_002294686.1 209920602 7001796 complement(3541377..3542711) 1 NC_011415.1 putative transport protein 3542711 7001796 ECSE_3411 Escherichia coli SE11 putative transport protein YP_002294686.1 3541377 R 409438 CDS YP_002294687.1 209920603 7001797 3543086..3544657 1 NC_011415.1 galactarate dehydratase 3544657 7001797 ECSE_3412 Escherichia coli SE11 galactarate dehydratase YP_002294687.1 3543086 D 409438 CDS YP_002294688.1 209920604 7001798 3544806..3545141 1 NC_011415.1 SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; putative regulator PrlF 3545141 7001798 ECSE_3413 Escherichia coli SE11 putative regulator PrlF YP_002294688.1 3544806 D 409438 CDS YP_002294689.1 209920605 7001799 3545141..3545605 1 NC_011415.1 hypothetical protein 3545605 7001799 ECSE_3414 Escherichia coli SE11 hypothetical protein YP_002294689.1 3545141 D 409438 CDS YP_002294690.1 209920606 7001800 complement(3545660..3546469) 1 NC_011415.1 transcriptional repressor for the agaZVWA and agaSYBCDI operons; DNA-binding transcriptional regulator AgaR 3546469 7001800 ECSE_3415 Escherichia coli SE11 DNA-binding transcriptional regulator AgaR YP_002294690.1 3545660 R 409438 CDS YP_002294691.1 209920607 7001801 3546718..3547998 1 NC_011415.1 putative tagatose 6-phosphate kinase 3547998 7001801 ECSE_3416 Escherichia coli SE11 putative tagatose 6-phosphate kinase YP_002294691.1 3546718 D 409438 CDS YP_002294692.1 209920608 7001802 3548021..3548494 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake;involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 3548494 7001802 ECSE_3417 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_002294692.1 3548021 D 409438 CDS YP_002294693.1 209920609 7001803 3548505..3549284 1 NC_011415.1 PTS system N-acetylgalactosamine-specific IIC component 3549284 7001803 ECSE_3418 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific IIC component YP_002294693.1 3548505 D 409438 CDS YP_002294694.1 209920610 7001804 3549274..3550152 1 NC_011415.1 PTS system N-acetylgalactosamine-specific IID component 3550152 7001804 ECSE_3419 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific IID component YP_002294694.1 3549274 D 409438 CDS YP_002294695.1 209920611 7001805 3550170..3550604 1 NC_011415.1 PTS system N-acetylgalactosamine-specific IIA component 3550604 7001805 ECSE_3420 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific IIA component YP_002294695.1 3550170 D 409438 CDS YP_002294696.1 209920612 7001806 3550601..3551734 1 NC_011415.1 N-acetylgalactosamine-6-phosphate deacetylase 3551734 7001806 ECSE_3421 Escherichia coli SE11 N-acetylgalactosamine-6-phosphate deacetylase YP_002294696.1 3550601 D 409438 CDS YP_002294697.1 209920613 7001807 3552085..3553239 1 NC_011415.1 putative tagatose-6-phosphate ketose/aldose isomerase 3553239 7001807 ECSE_3422 Escherichia coli SE11 putative tagatose-6-phosphate ketose/aldose isomerase YP_002294697.1 3552085 D 409438 CDS YP_002294698.1 209920614 7001808 3553252..3554112 1 NC_011415.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 3554112 kbaY 7001808 kbaY Escherichia coli SE11 tagatose-bisphosphate aldolase YP_002294698.1 3553252 D 409438 CDS YP_002294699.1 209920615 7001809 3554280..3554756 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIB 3554756 7001809 ECSE_3424 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific transporter subunit IIB YP_002294699.1 3554280 D 409438 CDS YP_002294700.1 209920616 7001810 3554795..3555598 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane;protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IIC 3555598 7001810 ECSE_3425 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific transporter subunit IIC YP_002294700.1 3554795 D 409438 CDS YP_002294701.1 209920617 7001811 3555588..3556379 1 NC_011415.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IID 3556379 7001811 ECSE_3426 Escherichia coli SE11 PTS system N-acetylgalactosamine-specific transporter subunit IID YP_002294701.1 3555588 D 409438 CDS YP_002294702.1 209920618 7001812 3556380..3557135 1 NC_011415.1 galactosamine-6-phosphate isomerase 3557135 7001812 ECSE_3427 Escherichia coli SE11 galactosamine-6-phosphate isomerase YP_002294702.1 3556380 D 409438 CDS YP_002294703.1 209920619 7001813 3557535..3558119 1 NC_011415.1 putative fimbrial protein 3558119 7001813 ECSE_3428 Escherichia coli SE11 putative fimbrial protein YP_002294703.1 3557535 D 409438 CDS YP_002294704.1 209920620 7001814 3558199..3558894 1 NC_011415.1 putative fimbrial chaperone 3558894 7001814 ECSE_3429 Escherichia coli SE11 putative fimbrial chaperone YP_002294704.1 3558199 D 409438 CDS YP_002294705.1 209920621 7001815 3558924..3561440 1 NC_011415.1 putative fimbrial usher protein 3561440 7001815 ECSE_3430 Escherichia coli SE11 putative fimbrial usher protein YP_002294705.1 3558924 D 409438 CDS YP_002294706.1 209920622 7001816 3561451..3562542 1 NC_011415.1 putative fimbrial protein 3562542 7001816 ECSE_3431 Escherichia coli SE11 putative fimbrial protein YP_002294706.1 3561451 D 409438 CDS YP_002294707.1 209920623 7001817 complement(3562585..3563445) 1 NC_011415.1 hypothetical protein 3563445 7001817 ECSE_3432 Escherichia coli SE11 hypothetical protein YP_002294707.1 3562585 R 409438 CDS YP_002294708.1 209920624 7001818 3563509..3565545 1 NC_011415.1 putative glycosylase 3565545 7001818 ECSE_3433 Escherichia coli SE11 putative glycosylase YP_002294708.1 3563509 D 409438 CDS YP_002294709.1 209920625 7001819 3565503..3565898 1 NC_011415.1 hypothetical protein 3565898 7001819 ECSE_3434 Escherichia coli SE11 hypothetical protein YP_002294709.1 3565503 D 409438 CDS YP_002294710.1 209920626 7001820 3565918..3566508 1 NC_011415.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein; DnaA initiator-associating protein DiaA 3566508 7001820 ECSE_3435 Escherichia coli SE11 DnaA initiator-associating protein DiaA YP_002294710.1 3565918 D 409438 CDS YP_002294711.1 209920627 7001821 3566518..3567093 1 NC_011415.1 hypothetical protein 3567093 7001821 ECSE_3436 Escherichia coli SE11 hypothetical protein YP_002294711.1 3566518 D 409438 CDS YP_002294712.1 209920628 7001822 complement(3567207..3568247) 1 NC_011415.1 hypothetical protein 3568247 7001822 ECSE_3437 Escherichia coli SE11 hypothetical protein YP_002294712.1 3567207 R 409438 CDS YP_002294713.1 209920629 7001823 complement(3568320..3569000) 1 NC_011415.1 hypothetical protein 3569000 7001823 ECSE_3438 Escherichia coli SE11 hypothetical protein YP_002294713.1 3568320 R 409438 CDS YP_002294714.1 209920630 7001824 3569083..3569601 1 NC_011415.1 hypothetical protein 3569601 7001824 ECSE_3439 Escherichia coli SE11 hypothetical protein YP_002294714.1 3569083 D 409438 CDS YP_002294715.1 209920631 7001825 complement(3569581..3570024) 1 NC_011415.1 hypothetical protein 3570024 7001825 ECSE_3440 Escherichia coli SE11 hypothetical protein YP_002294715.1 3569581 R 409438 CDS YP_002294716.1 209920632 7001826 3570075..3570377 1 NC_011415.1 GIY-YIG nuclease superfamily protein 3570377 7001826 ECSE_3441 Escherichia coli SE11 GIY-YIG nuclease superfamily protein YP_002294716.1 3570075 D 409438 CDS YP_002294717.1 209920633 7001827 complement(3570364..3570867) 1 NC_011415.1 hypothetical protein 3570867 7001827 ECSE_3442 Escherichia coli SE11 hypothetical protein YP_002294717.1 3570364 R 409438 CDS YP_002294718.1 209920634 7001828 complement(3570861..3571385) 1 NC_011415.1 hypothetical protein 3571385 7001828 ECSE_3443 Escherichia coli SE11 hypothetical protein YP_002294718.1 3570861 R 409438 CDS YP_002294719.1 209920635 7001829 3571594..3572589 1 NC_011415.1 putative protease 3572589 7001829 ECSE_3444 Escherichia coli SE11 putative protease YP_002294719.1 3571594 D 409438 CDS YP_002294720.1 209920636 7001830 3572598..3573476 1 NC_011415.1 hypothetical protein 3573476 7001830 ECSE_3445 Escherichia coli SE11 hypothetical protein YP_002294720.1 3572598 D 409438 CDS YP_002294721.1 209920637 7001831 3573682..3574689 1 NC_011415.1 hypothetical protein 3574689 7001831 ECSE_3446 Escherichia coli SE11 hypothetical protein YP_002294721.1 3573682 D 409438 CDS YP_002294722.1 209920638 7001832 complement(3574807..3576051) 1 NC_011415.1 tryptophan transporter of high affinity; tryptophan permease 3576051 7001832 ECSE_3447 Escherichia coli SE11 tryptophan permease YP_002294722.1 3574807 R 409438 CDS YP_002294723.1 209920639 7001833 complement(3576205..3578145) 1 NC_011415.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; ATP-dependent RNA helicase DeaD 3578145 7001833 ECSE_3448 Escherichia coli SE11 ATP-dependent RNA helicase DeaD YP_002294723.1 3576205 R 409438 CDS YP_002294724.1 209920640 7001834 complement(3578274..3579158) 1 NC_011415.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI 3579158 7001834 ECSE_3449 Escherichia coli SE11 lipoprotein NlpI YP_002294724.1 3578274 R 409438 CDS YP_002294725.1 209920641 7001835 complement(3579267..3581471) 1 NC_011415.1 polynucleotide phosphorylase/polyadenylase 3581471 7001835 ECSE_3450 Escherichia coli SE11 polynucleotide phosphorylase/polyadenylase YP_002294725.1 3579267 R 409438 CDS YP_002294726.1 209920642 7001836 complement(3581649..3581918) 1 NC_011415.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3581918 rpsO 7001836 rpsO Escherichia coli SE11 30S ribosomal protein S15 YP_002294726.1 3581649 R 409438 CDS YP_002294727.1 209920643 7001837 complement(3582067..3583011) 1 NC_011415.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3583011 truB 7001837 truB Escherichia coli SE11 tRNA pseudouridine synthase B YP_002294727.1 3582067 R 409438 CDS YP_002294728.1 209920644 7001838 complement(3583011..3583412) 1 NC_011415.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3583412 rbfA 7001838 rbfA Escherichia coli SE11 ribosome-binding factor A YP_002294728.1 3583011 R 409438 CDS YP_002294729.1 209920645 7001839 complement(3583576..3586248) 1 NC_011415.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3586248 infB 7001839 infB Escherichia coli SE11 translation initiation factor IF-2 YP_002294729.1 3583576 R 409438 CDS YP_002294730.1 209920646 7001840 complement(3586273..3587760) 1 NC_011415.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3587760 nusA 7001840 nusA Escherichia coli SE11 transcription elongation factor NusA YP_002294730.1 3586273 R 409438 CDS YP_002294731.1 209920647 7001841 complement(3587788..3588210) 1 NC_011415.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3588210 7001841 ECSE_3456 Escherichia coli SE11 hypothetical protein YP_002294731.1 3587788 R 409438 CDS YP_002294732.1 209920648 7003130 3588871..3590214 1 NC_011415.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 3590214 7003130 ECSE_3457 Escherichia coli SE11 argininosuccinate synthase YP_002294732.1 3588871 D 409438 CDS YP_002294733.1 209920649 7001843 complement(3590222..3591865) 1 NC_011415.1 putative alkaline phosphatase I 3591865 7001843 ECSE_3458 Escherichia coli SE11 putative alkaline phosphatase I YP_002294733.1 3590222 R 409438 CDS YP_002294734.1 209920650 7003129 complement(3592407..3592739) 1 NC_011415.1 preprotein translocase subunit SecG 3592739 secG 7003129 secG Escherichia coli SE11 preprotein translocase subunit SecG YP_002294734.1 3592407 R 409438 CDS YP_002294735.1 209920651 7001845 complement(3592967..3594304) 1 NC_011415.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3594304 glmM 7001845 glmM Escherichia coli SE11 phosphoglucosamine mutase YP_002294735.1 3592967 R 409438 CDS YP_002294736.1 209920652 7001846 complement(3594297..3595145) 1 NC_011415.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate; dihydropteroate synthase 3595145 folP 7001846 folP Escherichia coli SE11 dihydropteroate synthase YP_002294736.1 3594297 R 409438 CDS YP_002294737.1 209920653 7001847 complement(3595235..3597169) 1 NC_011415.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins; ATP-dependent metalloprotease 3597169 hflB 7001847 hflB Escherichia coli SE11 ATP-dependent metalloprotease YP_002294737.1 3595235 R 409438 CDS YP_002294738.1 209920654 7001848 complement(3597269..3597898) 1 NC_011415.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 3597898 rrmJ 7001848 rrmJ Escherichia coli SE11 23S rRNA methyltransferase J YP_002294738.1 3597269 R 409438 CDS YP_002294739.1 209920655 7001849 3598024..3598317 1 NC_011415.1 RNA binding protein found associated to pre-50S subunit of the ribosome; putative role in ribosome assembly; necessary for optimal growth but not cell viability; RNA-binding protein YhbY 3598317 7001849 ECSE_3464 Escherichia coli SE11 RNA-binding protein YhbY YP_002294739.1 3598024 D 409438 CDS YP_002294740.1 209920656 7001850 complement(3598473..3598949) 1 NC_011415.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3598949 greA 7001850 greA Escherichia coli SE11 transcription elongation factor GreA YP_002294740.1 3598473 R 409438 CDS YP_002294741.1 209920657 7001851 3599197..3600630 1 NC_011415.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 3600630 7001851 ECSE_3466 Escherichia coli SE11 D-alanyl-D-alanine carboxypeptidase/endopeptidase YP_002294741.1 3599197 D 409438 CDS YP_002294742.1 209920658 7001852 complement(3600670..3601842) 1 NC_011415.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3601842 obgE 7001852 obgE Escherichia coli SE11 GTPase ObgE YP_002294742.1 3600670 R 409438 CDS YP_002294743.1 209920659 7001853 complement(3601858..3602823) 1 NC_011415.1 hypothetical protein 3602823 7001853 ECSE_3468 Escherichia coli SE11 hypothetical protein YP_002294743.1 3601858 R 409438 CDS YP_002294744.1 209920660 7001854 complement(3602950..3603207) 1 NC_011415.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3603207 rpmA 7001854 rpmA Escherichia coli SE11 50S ribosomal protein L27 YP_002294744.1 3602950 R 409438 CDS YP_002294745.1 209920661 7001855 complement(3603228..3603539) 1 NC_011415.1 50S ribosomal protein L21 3603539 rplU 7001855 rplU Escherichia coli SE11 50S ribosomal protein L21 YP_002294745.1 3603228 R 409438 CDS YP_002294746.1 209920662 7001856 3603798..3604769 1 NC_011415.1 octaprenyl diphosphate synthase 3604769 7001856 ECSE_3471 Escherichia coli SE11 octaprenyl diphosphate synthase YP_002294746.1 3603798 D 409438 CDS YP_002294747.1 209920663 7001857 3604997..3605275 1 NC_011415.1 activator of maltose metabolism genes; DNA-binding transcriptional regulator Nlp 3605275 7001857 ECSE_3472 Escherichia coli SE11 DNA-binding transcriptional regulator Nlp YP_002294747.1 3604997 D 409438 CDS YP_002294748.1 209920664 7001858 complement(3605323..3606582) 1 NC_011415.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3606582 7001858 ECSE_3473 Escherichia coli SE11 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002294748.1 3605323 R 409438 CDS YP_002294749.1 209920665 7001859 complement(3606637..3606891) 1 NC_011415.1 hypothetical protein 3606891 7001859 ECSE_3474 Escherichia coli SE11 hypothetical protein YP_002294749.1 3606637 R 409438 CDS YP_002294750.1 209920666 7001860 complement(3607051..3607344) 1 NC_011415.1 hypothetical protein 3607344 7001860 ECSE_3475 Escherichia coli SE11 hypothetical protein YP_002294750.1 3607051 R 409438 CDS YP_002294751.1 209920667 7001861 complement(3607344..3607979) 1 NC_011415.1 putative transport protein 3607979 7001861 ECSE_3476 Escherichia coli SE11 putative transport protein YP_002294751.1 3607344 R 409438 CDS YP_002294752.1 209920668 7001862 complement(3607998..3608549) 1 NC_011415.1 hypothetical protein 3608549 7001862 ECSE_3477 Escherichia coli SE11 hypothetical protein YP_002294752.1 3607998 R 409438 CDS YP_002294753.1 209920669 7001863 complement(3608554..3609336) 1 NC_011415.1 putative ABC transporter permease 3609336 7001863 ECSE_3478 Escherichia coli SE11 putative ABC transporter permease YP_002294753.1 3608554 R 409438 CDS YP_002294754.1 209920670 7001864 complement(3609344..3610153) 1 NC_011415.1 ATP-binding subunit of a putative ABC toluene efflux transporter; putative ABC transporter ATP-binding protein YrbF 3610153 7001864 ECSE_3479 Escherichia coli SE11 putative ABC transporter ATP-binding protein YrbF YP_002294754.1 3609344 R 409438 CDS YP_002294755.1 209920671 7001865 3610363..3611340 1 NC_011415.1 YrbG; inner membrane protein involved in cell envelope integrity; putative sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers; putative calcium/sodium:proton antiporter 3611340 7001865 ECSE_3480 Escherichia coli SE11 putative calcium/sodium:proton antiporter YP_002294755.1 3610363 D 409438 CDS YP_002294756.1 209920672 7001866 3611354..3612340 1 NC_011415.1 D-arabinose 5-phosphate isomerase 3612340 7001866 ECSE_3481 Escherichia coli SE11 D-arabinose 5-phosphate isomerase YP_002294756.1 3611354 D 409438 CDS YP_002294757.1 209920673 7001867 3612361..3612927 1 NC_011415.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3612927 7001867 ECSE_3482 Escherichia coli SE11 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002294757.1 3612361 D 409438 CDS YP_002294758.1 209920674 7001868 3612924..3613499 1 NC_011415.1 hypothetical protein 3613499 7001868 ECSE_3483 Escherichia coli SE11 hypothetical protein YP_002294758.1 3612924 D 409438 CDS YP_002294759.1 209920675 7001869 3613468..3614025 1 NC_011415.1 LptA; periplasmic binding protein part of a putative ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system; lipopolysaccharide transport periplasmic protein LptA 3614025 7001869 ECSE_3484 Escherichia coli SE11 lipopolysaccharide transport periplasmic protein LptA YP_002294759.1 3613468 D 409438 CDS YP_002294760.1 209920676 7001870 3614032..3614757 1 NC_011415.1 putative ABC transporter ATP-binding protein YhbG 3614757 7001870 ECSE_3485 Escherichia coli SE11 putative ABC transporter ATP-binding protein YhbG YP_002294760.1 3614032 D 409438 CDS YP_002294761.1 209920677 7001871 3614805..3616238 1 NC_011415.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 3616238 7001871 ECSE_3486 Escherichia coli SE11 RNA polymerase factor sigma-54 YP_002294761.1 3614805 D 409438 CDS YP_002294762.1 209920678 7001872 3616261..3616548 1 NC_011415.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing; putative sigma(54) modulation protein 3616548 7001872 ECSE_3487 Escherichia coli SE11 putative sigma(54) modulation protein YP_002294762.1 3616261 D 409438 CDS YP_002294763.1 209920679 7001873 3616666..3617157 1 NC_011415.1 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 3617157 7001873 ECSE_3488 Escherichia coli SE11 PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002294763.1 3616666 D 409438 CDS YP_002294764.1 209920680 7001874 3617203..3618057 1 NC_011415.1 hypothetical protein 3618057 7001874 ECSE_3489 Escherichia coli SE11 hypothetical protein YP_002294764.1 3617203 D 409438 CDS YP_002294765.1 209920681 7001875 3618054..3618326 1 NC_011415.1 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3618326 7001875 ECSE_3490 Escherichia coli SE11 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) YP_002294765.1 3618054 D 409438 CDS YP_002294766.1 209920682 7001876 3618540..3619172 1 NC_011415.1 hypothetical protein 3619172 7001876 ECSE_3491 Escherichia coli SE11 hypothetical protein YP_002294766.1 3618540 D 409438 CDS YP_002294767.1 209920683 7001877 complement(3619169..3619897) 1 NC_011415.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3619897 mtgA 7001877 mtgA Escherichia coli SE11 monofunctional biosynthetic peptidoglycan transglycosylase YP_002294767.1 3619169 R 409438 CDS YP_002294768.1 209920684 7001878 complement(3619894..3620547) 1 NC_011415.1 isoprenoid biosynthesis protein with amidotransferase-like domain 3620547 7001878 ECSE_3493 Escherichia coli SE11 isoprenoid biosynthesis protein with amidotransferase-like domain YP_002294768.1 3619894 R 409438 CDS YP_002294769.1 209920685 7001879 complement(3620777..3623113) 1 NC_011415.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; aerobic respiration control sensor protein ArcB 3623113 7001879 ECSE_3494 Escherichia coli SE11 aerobic respiration control sensor protein ArcB YP_002294769.1 3620777 R 409438 CDS YP_002294770.1 209920686 7001880 complement(3623209..3624171) 1 NC_011415.1 hypothetical protein 3624171 7001880 ECSE_3495 Escherichia coli SE11 hypothetical protein YP_002294770.1 3623209 R 409438 CDS YP_002294771.1 209920687 7001881 complement(3624403..3624540) 1 NC_011415.1 hypothetical protein 3624540 7001881 ECSE_3496 Escherichia coli SE11 hypothetical protein YP_002294771.1 3624403 R 409438 CDS YP_002294772.1 209920688 7001882 3624720..3629273 1 NC_011415.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3629273 gltB 7001882 gltB Escherichia coli SE11 glutamate synthase subunit alpha YP_002294772.1 3624720 D 409438 CDS YP_002294773.1 209920689 7001883 3629286..3630704 1 NC_011415.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3630704 gltD 7001883 gltD Escherichia coli SE11 glutamate synthase subunit beta YP_002294773.1 3629286 D 409438 CDS YP_002294774.1 209920690 7001884 3630888..3632015 1 NC_011415.1 hypothetical protein 3632015 7001884 ECSE_3499 Escherichia coli SE11 hypothetical protein YP_002294774.1 3630888 D 409438 CDS YP_002294775.1 209920691 7001885 complement(3632075..3632539) 1 NC_011415.1 hypothetical protein 3632539 7001885 ECSE_3500 Escherichia coli SE11 hypothetical protein YP_002294775.1 3632075 R 409438 CDS YP_002294776.1 209920692 7001886 complement(3632536..3633411) 1 NC_011415.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 3633411 7001886 ECSE_3501 Escherichia coli SE11 N-acetylmannosamine kinase YP_002294776.1 3632536 R 409438 CDS YP_002294777.1 209920693 7001887 complement(3633408..3634097) 1 NC_011415.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 3634097 7001887 ECSE_3502 Escherichia coli SE11 N-acetylmannosamine-6-phosphate 2-epimerase YP_002294777.1 3633408 R 409438 CDS YP_002294778.1 209920694 7001888 complement(3634145..3635635) 1 NC_011415.1 putative sialic acid transporter 3635635 7001888 ECSE_3503 Escherichia coli SE11 putative sialic acid transporter YP_002294778.1 3634145 R 409438 CDS YP_002294779.1 209920695 7001889 complement(3635744..3636637) 1 NC_011415.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 3636637 7001889 ECSE_3504 Escherichia coli SE11 N-acetylneuraminate lyase YP_002294779.1 3635744 R 409438 CDS YP_002294780.1 209920696 7001890 complement(3636759..3637550) 1 NC_011415.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 3637550 7001890 ECSE_3505 Escherichia coli SE11 transcriptional regulator NanR YP_002294780.1 3636759 R 409438 CDS YP_002294781.1 209920697 7001891 3637930..3639297 1 NC_011415.1 YhcL; uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters; probable role in transport of carboxylates across the inner membrane from the periplasm; its encoding gene is not essential for growth and is probably cryptic; putative cryptic C4-dicarboxylate transporter DcuD 3639297 7001891 ECSE_3506 Escherichia coli SE11 putative cryptic C4-dicarboxylate transporter DcuD YP_002294781.1 3637930 D 409438 CDS YP_002294782.1 209920698 7001892 complement(3639340..3639837) 1 NC_011415.1 ClpXP protease specificity-enhancing factor 3639837 7001892 ECSE_3507 Escherichia coli SE11 ClpXP protease specificity-enhancing factor YP_002294782.1 3639340 R 409438 CDS YP_002294783.1 209920699 7001893 complement(3639843..3640481) 1 NC_011415.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; stringent starvation protein A 3640481 sspA 7001893 sspA Escherichia coli SE11 stringent starvation protein A YP_002294783.1 3639843 R 409438 CDS YP_002294784.1 209920700 7001894 complement(3640876..3641268) 1 NC_011415.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3641268 rpsI 7001894 rpsI Escherichia coli SE11 30S ribosomal protein S9 YP_002294784.1 3640876 R 409438 CDS YP_002294785.1 209920701 7001895 complement(3641284..3641712) 1 NC_011415.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3641712 rplM 7001895 rplM Escherichia coli SE11 50S ribosomal protein L13 YP_002294785.1 3641284 R 409438 CDS YP_002294786.1 209920702 7001896 complement(3641931..3643058) 1 NC_011415.1 hypothetical protein 3643058 7001896 ECSE_3511 Escherichia coli SE11 hypothetical protein YP_002294786.1 3641931 R 409438 CDS YP_002294787.1 209920703 7001897 3643252..3643650 1 NC_011415.1 cytochrome d ubiquinol oxidase subunit III 3643650 7001897 ECSE_3512 Escherichia coli SE11 cytochrome d ubiquinol oxidase subunit III YP_002294787.1 3643252 D 409438 CDS YP_002294788.1 209920704 7001898 3643804..3645171 1 NC_011415.1 serine endoprotease 3645171 7001898 ECSE_3513 Escherichia coli SE11 serine endoprotease YP_002294788.1 3643804 D 409438 CDS YP_002294789.1 209920705 7001899 3645261..3646328 1 NC_011415.1 serine endoprotease 3646328 7001899 ECSE_3514 Escherichia coli SE11 serine endoprotease YP_002294789.1 3645261 D 409438 CDS YP_002294790.1 209920706 7001900 complement(3646390..3647328) 1 NC_011415.1 oxidizes malate to oxaloacetate; malate dehydrogenase 3647328 7001900 ECSE_3515 Escherichia coli SE11 malate dehydrogenase YP_002294790.1 3646390 R 409438 CDS YP_002294791.1 209920707 7001901 3647763..3648233 1 NC_011415.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 3648233 7001901 ECSE_3516 Escherichia coli SE11 arginine repressor YP_002294791.1 3647763 D 409438 CDS YP_002294792.1 209920708 7001902 3648598..3648861 1 NC_011415.1 hypothetical protein 3648861 7001902 ECSE_3517 Escherichia coli SE11 hypothetical protein YP_002294792.1 3648598 D 409438 CDS YP_002294793.1 209920709 7001903 complement(3648917..3649189) 1 NC_011415.1 hypothetical protein 3649189 7001903 ECSE_3518 Escherichia coli SE11 hypothetical protein YP_002294793.1 3648917 R 409438 CDS YP_002294794.1 209920710 7001904 complement(3649281..3651248) 1 NC_011415.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeB 3651248 7001904 ECSE_3519 Escherichia coli SE11 p-hydroxybenzoic acid efflux subunit AaeB YP_002294794.1 3649281 R 409438 CDS YP_002294795.1 209920711 7001905 complement(3651254..3652186) 1 NC_011415.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate; p-hydroxybenzoic acid efflux subunit AaeA 3652186 7001905 ECSE_3520 Escherichia coli SE11 p-hydroxybenzoic acid efflux subunit AaeA YP_002294795.1 3651254 R 409438 CDS YP_002294796.2 229598029 7001906 complement(3652194..3652397) 1 NC_011415.1 membrane protein AaeX; the gene is a member of the aaeXAB operon; hypothetical protein 3652397 7001906 ECSE_3521 Escherichia coli SE11 hypothetical protein YP_002294796.2 3652194 R 409438 CDS YP_002294797.1 209920713 7001907 3652580..3653509 1 NC_011415.1 putative DNA-binding transcriptional regulator 3653509 7001907 ECSE_3522 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002294797.1 3652580 D 409438 CDS YP_002294798.1 209920714 7001908 complement(3653643..3655088) 1 NC_011415.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 3655088 tldD 7001908 tldD Escherichia coli SE11 protease TldD YP_002294798.1 3653643 R 409438 CDS YP_002294799.1 209920715 7001909 complement(3655215..3655397) 1 NC_011415.1 hypothetical protein 3655397 7001909 ECSE_3524 Escherichia coli SE11 hypothetical protein YP_002294799.1 3655215 R 409438 CDS YP_002294800.1 209920716 7001910 complement(3655518..3659318) 1 NC_011415.1 hypothetical protein 3659318 7001910 ECSE_3525 Escherichia coli SE11 hypothetical protein YP_002294800.1 3655518 R 409438 CDS YP_002294801.1 209920717 7001911 complement(3659386..3660855) 1 NC_011415.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 3660855 7001911 ECSE_3526 Escherichia coli SE11 ribonuclease G YP_002294801.1 3659386 R 409438 CDS YP_002294802.1 209920718 7001912 complement(3660845..3661438) 1 NC_011415.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3661438 7001912 ECSE_3527 Escherichia coli SE11 Maf-like protein YP_002294802.1 3660845 R 409438 CDS YP_002294803.1 209920719 7001913 complement(3661447..3661935) 1 NC_011415.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 3661935 7001913 ECSE_3528 Escherichia coli SE11 rod shape-determining protein MreD YP_002294803.1 3661447 R 409438 CDS YP_002294804.1 209920720 7001914 complement(3661935..3663038) 1 NC_011415.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3663038 7001914 ECSE_3529 Escherichia coli SE11 rod shape-determining protein MreC YP_002294804.1 3661935 R 409438 CDS YP_002294805.1 209920721 7001915 complement(3663104..3664147) 1 NC_011415.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3664147 7001915 ECSE_3530 Escherichia coli SE11 rod shape-determining protein MreB YP_002294805.1 3663104 R 409438 CDS YP_002294806.1 209920722 7001916 3664255..3664443 1 NC_011415.1 hypothetical protein 3664443 7001916 ECSE_3531 Escherichia coli SE11 hypothetical protein YP_002294806.1 3664255 D 409438 CDS YP_002294807.1 209920723 7001917 complement(3664452..3666392) 1 NC_011415.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules; regulatory protein CsrD 3666392 7001917 ECSE_3532 Escherichia coli SE11 regulatory protein CsrD YP_002294807.1 3664452 R 409438 CDS YP_002294808.1 209920724 7001918 3666544..3667518 1 NC_011415.1 putative dehydrogenase 3667518 7001918 ECSE_3533 Escherichia coli SE11 putative dehydrogenase YP_002294808.1 3666544 D 409438 CDS YP_002294809.1 209920725 7001919 3667555..3667719 1 NC_011415.1 hypothetical protein 3667719 7001919 ECSE_3534 Escherichia coli SE11 hypothetical protein YP_002294809.1 3667555 D 409438 CDS YP_002294810.1 209920726 7001920 3667927..3668091 1 NC_011415.1 hypothetical protein 3668091 7001920 ECSE_3535 Escherichia coli SE11 hypothetical protein YP_002294810.1 3667927 D 409438 CDS YP_002294811.1 209920727 7001921 3668496..3668966 1 NC_011415.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 3668966 7001921 ECSE_3536 Escherichia coli SE11 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_002294811.1 3668496 D 409438 CDS YP_002294812.1 209920728 7001922 3668977..3670326 1 NC_011415.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 3670326 7001922 ECSE_3537 Escherichia coli SE11 acetyl-CoA carboxylase biotin carboxylase subunit YP_002294812.1 3668977 D 409438 CDS YP_002294813.1 209920729 7001923 3670435..3670677 1 NC_011415.1 hypothetical protein 3670677 7001923 ECSE_3538 Escherichia coli SE11 hypothetical protein YP_002294813.1 3670435 D 409438 CDS YP_002294814.1 209920730 7001924 3670667..3672118 1 NC_011415.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 3672118 panF 7001924 panF Escherichia coli SE11 sodium/panthothenate symporter YP_002294814.1 3670667 D 409438 CDS YP_002294815.1 209920731 7001925 3672130..3673011 1 NC_011415.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3673011 prmA 7001925 prmA Escherichia coli SE11 ribosomal protein L11 methyltransferase YP_002294815.1 3672130 D 409438 CDS YP_002294816.1 209920732 7001926 3673340..3674305 1 NC_011415.1 tRNA-dihydrouridine synthase B 3674305 7001926 ECSE_3541 Escherichia coli SE11 tRNA-dihydrouridine synthase B YP_002294816.1 3673340 D 409438 CDS YP_002294817.1 209920733 7001927 3674331..3674627 1 NC_011415.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 3674627 fis 7001927 fis Escherichia coli SE11 DNA-binding protein Fis YP_002294817.1 3674331 D 409438 CDS YP_002294818.1 209920734 7001928 3674713..3675597 1 NC_011415.1 putative methyltransferase 3675597 7001928 ECSE_3543 Escherichia coli SE11 putative methyltransferase YP_002294818.1 3674713 D 409438 CDS YP_002294819.1 209920735 7001929 3675654..3675860 1 NC_011415.1 hypothetical protein 3675860 7001929 ECSE_3544 Escherichia coli SE11 hypothetical protein YP_002294819.1 3675654 D 409438 CDS YP_002294820.1 209920736 7001930 complement(3675863..3676525) 1 NC_011415.1 DNA-binding transcriptional regulator EnvR 3676525 7001930 ECSE_3545 Escherichia coli SE11 DNA-binding transcriptional regulator EnvR YP_002294820.1 3675863 R 409438 CDS YP_002294821.1 209920737 7001931 3676924..3678081 1 NC_011415.1 acriflavine resistance protein 3678081 7001931 ECSE_3546 Escherichia coli SE11 acriflavine resistance protein YP_002294821.1 3676924 D 409438 CDS YP_002294822.1 209920738 7001932 3678093..3681197 1 NC_011415.1 acriflavine resistance protein 3681197 7001932 ECSE_3547 Escherichia coli SE11 acriflavine resistance protein YP_002294822.1 3678093 D 409438 CDS YP_002294823.1 209920739 7001933 3681450..3681671 1 NC_011415.1 hypothetical protein 3681671 7001933 ECSE_3548 Escherichia coli SE11 hypothetical protein YP_002294823.1 3681450 D 409438 CDS YP_002294824.1 209920740 7001934 complement(3681719..3681865) 1 NC_011415.1 hypothetical protein 3681865 7001934 ECSE_3549 Escherichia coli SE11 hypothetical protein YP_002294824.1 3681719 R 409438 CDS YP_002294825.1 209920741 7001935 3682210..3683127 1 NC_011415.1 amino acid ABC transporter substrate binding component 3683127 7001935 ECSE_3550 Escherichia coli SE11 amino acid ABC transporter substrate binding component YP_002294825.1 3682210 D 409438 CDS YP_002294826.1 209920742 7001936 3683195..3684376 1 NC_011415.1 amino acid ABC transporter permease 3684376 7001936 ECSE_3551 Escherichia coli SE11 amino acid ABC transporter permease YP_002294826.1 3683195 D 409438 CDS YP_002294827.1 209920743 7001937 3684383..3685489 1 NC_011415.1 amino acid ABC transporter permease 3685489 7001937 ECSE_3552 Escherichia coli SE11 amino acid ABC transporter permease YP_002294827.1 3684383 D 409438 CDS YP_002294828.1 209920744 7001938 3685497..3686255 1 NC_011415.1 amino acid ABC transporter ATP-binding protein 3686255 7001938 ECSE_3553 Escherichia coli SE11 amino acid ABC transporter ATP-binding protein YP_002294828.1 3685497 D 409438 CDS YP_002294829.1 209920745 7000074 3691920..3692690 1 NC_011415.1 putative transferase 3692690 7000074 ECSE_3554 Escherichia coli SE11 putative transferase YP_002294829.1 3691920 D 409438 CDS YP_002294830.1 209920746 7001940 complement(3692666..3692923) 1 NC_011415.1 hypothetical protein 3692923 7001940 ECSE_3555 Escherichia coli SE11 hypothetical protein YP_002294830.1 3692666 R 409438 CDS YP_002294831.1 209920747 7001941 complement(3692920..3693738) 1 NC_011415.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3693738 aroE 7001941 aroE Escherichia coli SE11 shikimate 5-dehydrogenase YP_002294831.1 3692920 R 409438 CDS YP_002294832.1 209920748 7001942 complement(3693743..3694315) 1 NC_011415.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA; putative ribosome maturation factor 3694315 7001942 ECSE_3557 Escherichia coli SE11 putative ribosome maturation factor YP_002294832.1 3693743 R 409438 CDS YP_002294833.1 209920749 7001943 complement(3694320..3694862) 1 NC_011415.1 putative DNA topoisomerase 3694862 7001943 ECSE_3558 Escherichia coli SE11 putative DNA topoisomerase YP_002294833.1 3694320 R 409438 CDS YP_002294834.1 209920750 7001944 complement(3694891..3695364) 1 NC_011415.1 hypothetical protein 3695364 7001944 ECSE_3559 Escherichia coli SE11 hypothetical protein YP_002294834.1 3694891 R 409438 CDS YP_002294835.1 209920751 7001945 complement(3695336..3696460) 1 NC_011415.1 DNA protecting protein DprA 3696460 7001945 ECSE_3560 Escherichia coli SE11 DNA protecting protein DprA YP_002294835.1 3695336 R 409438 CDS YP_002294836.1 209920752 7001946 3696590..3697099 1 NC_011415.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3697099 def 7001946 def Escherichia coli SE11 peptide deformylase YP_002294836.1 3696590 D 409438 CDS YP_002294837.1 209920753 7001947 3697114..3698061 1 NC_011415.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3698061 fmt 7001947 fmt Escherichia coli SE11 methionyl-tRNA formyltransferase YP_002294837.1 3697114 D 409438 CDS YP_002294838.1 209920754 7001948 3698107..3699396 1 NC_011415.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase; 16S rRNA methyltransferase B 3699396 7001948 ECSE_3563 Escherichia coli SE11 16S rRNA methyltransferase B YP_002294838.1 3698107 D 409438 CDS YP_002294839.1 209920755 7001949 3699418..3700794 1 NC_011415.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 3700794 trkA 7001949 trkA Escherichia coli SE11 potassium transporter peripheral membrane component YP_002294839.1 3699418 D 409438 CDS YP_002294840.1 209920756 7001950 3700924..3701334 1 NC_011415.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 3701334 mscL 7001950 mscL Escherichia coli SE11 large-conductance mechanosensitive channel YP_002294840.1 3700924 D 409438 CDS YP_002294841.1 209920757 7001951 complement(3701331..3701549) 1 NC_011415.1 hypothetical protein 3701549 7001951 ECSE_3566 Escherichia coli SE11 hypothetical protein YP_002294841.1 3701331 R 409438 CDS YP_002294842.1 209920758 7001952 complement(3701605..3702030) 1 NC_011415.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators; zinc-responsive transcriptional regulator 3702030 zntR 7001952 zntR Escherichia coli SE11 zinc-responsive transcriptional regulator YP_002294842.1 3701605 R 409438 CDS YP_002294843.1 209920759 7001953 complement(3702041..3702409) 1 NC_011415.1 hypothetical protein 3702409 7001953 ECSE_3568 Escherichia coli SE11 hypothetical protein YP_002294843.1 3702041 R 409438 CDS YP_002294844.1 209920760 7001954 complement(3702516..3702899) 1 NC_011415.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3702899 rplQ 7001954 rplQ Escherichia coli SE11 50S ribosomal protein L17 YP_002294844.1 3702516 R 409438 CDS YP_002294845.1 209920761 7001955 complement(3702940..3703929) 1 NC_011415.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3703929 7001955 ECSE_3570 Escherichia coli SE11 DNA-directed RNA polymerase subunit alpha YP_002294845.1 3702940 R 409438 CDS YP_002294846.1 209920762 7001956 complement(3703955..3704575) 1 NC_011415.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3704575 rpsD 7001956 rpsD Escherichia coli SE11 30S ribosomal protein S4 YP_002294846.1 3703955 R 409438 CDS YP_002294847.1 209920763 7001957 complement(3704609..3704998) 1 NC_011415.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3704998 7001957 ECSE_3572 Escherichia coli SE11 30S ribosomal protein S11 YP_002294847.1 3704609 R 409438 CDS YP_002294848.1 209920764 7001958 complement(3705015..3705371) 1 NC_011415.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3705371 rpsM 7001958 rpsM Escherichia coli SE11 30S ribosomal protein S13 YP_002294848.1 3705015 R 409438 CDS YP_002294849.1 209920765 7001959 complement(3705518..3705634) 1 NC_011415.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 3705634 rpmJ 7001959 rpmJ Escherichia coli SE11 50S ribosomal protein L36 YP_002294849.1 3705518 R 409438 CDS YP_002294850.1 209920766 7001960 complement(3705666..3706997) 1 NC_011415.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3706997 secY 7001960 secY Escherichia coli SE11 preprotein translocase subunit SecY YP_002294850.1 3705666 R 409438 CDS YP_002294851.1 209920767 7001961 complement(3707005..3707439) 1 NC_011415.1 late assembly protein; 50S ribosomal protein L15 3707439 rplO 7001961 rplO Escherichia coli SE11 50S ribosomal protein L15 YP_002294851.1 3707005 R 409438 CDS YP_002294852.1 209920768 7001962 complement(3707443..3707622) 1 NC_011415.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3707622 rpmD 7001962 rpmD Escherichia coli SE11 50S ribosomal protein L30 YP_002294852.1 3707443 R 409438 CDS YP_002294853.1 209920769 7001963 complement(3707626..3708129) 1 NC_011415.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3708129 rpsE 7001963 rpsE Escherichia coli SE11 30S ribosomal protein S5 YP_002294853.1 3707626 R 409438 CDS YP_002294854.1 209920770 7001964 complement(3708144..3708497) 1 NC_011415.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3708497 rplR 7001964 rplR Escherichia coli SE11 50S ribosomal protein L18 YP_002294854.1 3708144 R 409438 CDS YP_002294855.1 209920771 7001965 complement(3708507..3709040) 1 NC_011415.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3709040 rplF 7001965 rplF Escherichia coli SE11 50S ribosomal protein L6 YP_002294855.1 3708507 R 409438 CDS YP_002294856.1 209920772 7001966 complement(3709053..3709445) 1 NC_011415.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3709445 rpsH 7001966 rpsH Escherichia coli SE11 30S ribosomal protein S8 YP_002294856.1 3709053 R 409438 CDS YP_002294857.1 209920773 7001967 complement(3709479..3709784) 1 NC_011415.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 3709784 rpsN 7001967 rpsN Escherichia coli SE11 30S ribosomal protein S14 YP_002294857.1 3709479 R 409438 CDS YP_002294858.1 209920774 7001968 complement(3709799..3710338) 1 NC_011415.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3710338 rplE 7001968 rplE Escherichia coli SE11 50S ribosomal protein L5 YP_002294858.1 3709799 R 409438 CDS YP_002294859.1 209920775 7001969 complement(3710353..3710667) 1 NC_011415.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3710667 rplX 7001969 rplX Escherichia coli SE11 50S ribosomal protein L24 YP_002294859.1 3710353 R 409438 CDS YP_002294860.1 209920776 7001970 complement(3710678..3711049) 1 NC_011415.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3711049 rplN 7001970 rplN Escherichia coli SE11 50S ribosomal protein L14 YP_002294860.1 3710678 R 409438 CDS YP_002294861.1 209920777 7001971 complement(3711214..3711468) 1 NC_011415.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3711468 rpsQ 7001971 rpsQ Escherichia coli SE11 30S ribosomal protein S17 YP_002294861.1 3711214 R 409438 CDS YP_002294862.1 209920778 7001972 complement(3711468..3711659) 1 NC_011415.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3711659 7001972 ECSE_3587 Escherichia coli SE11 50S ribosomal protein L29 YP_002294862.1 3711468 R 409438 CDS YP_002294863.1 209920779 7001973 complement(3711659..3712069) 1 NC_011415.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3712069 rplP 7001973 rplP Escherichia coli SE11 50S ribosomal protein L16 YP_002294863.1 3711659 R 409438 CDS YP_002294864.1 209920780 7001974 complement(3712082..3712783) 1 NC_011415.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3712783 rpsC 7001974 rpsC Escherichia coli SE11 30S ribosomal protein S3 YP_002294864.1 3712082 R 409438 CDS YP_002294865.1 209920781 7001975 complement(3712801..3713133) 1 NC_011415.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3713133 rplV 7001975 rplV Escherichia coli SE11 50S ribosomal protein L22 YP_002294865.1 3712801 R 409438 CDS YP_002294866.1 209920782 7001976 complement(3713148..3713426) 1 NC_011415.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3713426 rpsS 7001976 rpsS Escherichia coli SE11 30S ribosomal protein S19 YP_002294866.1 3713148 R 409438 CDS YP_002294867.1 209920783 7001977 complement(3713443..3714264) 1 NC_011415.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3714264 rplB 7001977 rplB Escherichia coli SE11 50S ribosomal protein L2 YP_002294867.1 3713443 R 409438 CDS YP_002294868.1 209920784 7001978 complement(3714282..3714584) 1 NC_011415.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3714584 rplW 7001978 rplW Escherichia coli SE11 50S ribosomal protein L23 YP_002294868.1 3714282 R 409438 CDS YP_002294869.1 209920785 7001979 complement(3714581..3715186) 1 NC_011415.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3715186 rplD 7001979 rplD Escherichia coli SE11 50S ribosomal protein L4 YP_002294869.1 3714581 R 409438 CDS YP_002294870.1 209920786 7001980 complement(3715197..3715826) 1 NC_011415.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3715826 rplC 7001980 rplC Escherichia coli SE11 50S ribosomal protein L3 YP_002294870.1 3715197 R 409438 CDS YP_002294871.1 209920787 7001981 complement(3715859..3716170) 1 NC_011415.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3716170 rpsJ 7001981 rpsJ Escherichia coli SE11 30S ribosomal protein S10 YP_002294871.1 3715859 R 409438 CDS YP_002294872.1 209920788 7001982 3716549..3717016 1 NC_011415.1 putative leader peptidase 3717016 7001982 ECSE_3597 Escherichia coli SE11 putative leader peptidase YP_002294872.1 3716549 D 409438 CDS YP_002294873.1 209920789 7001983 complement(3717013..3717489) 1 NC_011415.1 iron storage protein; bacterioferritin 3717489 7001983 ECSE_3598 Escherichia coli SE11 bacterioferritin YP_002294873.1 3717013 R 409438 CDS YP_002294874.1 209920790 7001984 complement(3717562..3717756) 1 NC_011415.1 bacterioferritin-associated ferredoxin 3717756 7001984 ECSE_3599 Escherichia coli SE11 bacterioferritin-associated ferredoxin YP_002294874.1 3717562 R 409438 CDS YP_002294875.1 209920791 7001985 complement(3717939..3719123) 1 NC_011415.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3719123 7001985 ECSE_3600 Escherichia coli SE11 elongation factor Tu YP_002294875.1 3717939 R 409438 CDS YP_002294876.1 209920792 7001986 complement(3719194..3721308) 1 NC_011415.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3721308 7001986 ECSE_3601 Escherichia coli SE11 elongation factor G YP_002294876.1 3719194 R 409438 CDS YP_002294877.1 209920793 7001987 complement(3721405..3721875) 1 NC_011415.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3721875 7001987 ECSE_3602 Escherichia coli SE11 30S ribosomal protein S7 YP_002294877.1 3721405 R 409438 CDS YP_002294878.1 209920794 7001988 complement(3721972..3722346) 1 NC_011415.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3722346 rpsL 7001988 rpsL Escherichia coli SE11 30S ribosomal protein S12 YP_002294878.1 3721972 R 409438 CDS YP_002294879.1 209920795 7001989 complement(3722472..3722759) 1 NC_011415.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusB 3722759 7001989 ECSE_3604 Escherichia coli SE11 sulfur transfer complex subunit TusB YP_002294879.1 3722472 R 409438 CDS YP_002294880.1 209920796 7001990 complement(3722767..3723126) 1 NC_011415.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 3723126 7001990 ECSE_3605 Escherichia coli SE11 sulfur relay protein TusC YP_002294880.1 3722767 R 409438 CDS YP_002294881.1 209920797 7001991 complement(3723126..3723512) 1 NC_011415.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 3723512 7001991 ECSE_3606 Escherichia coli SE11 sulfur transfer complex subunit TusD YP_002294881.1 3723126 R 409438 CDS YP_002294882.1 209920798 7001992 complement(3723512..3724234) 1 NC_011415.1 hypothetical protein 3724234 7001992 ECSE_3607 Escherichia coli SE11 hypothetical protein YP_002294882.1 3723512 R 409438 CDS YP_002294883.1 209920799 7001993 complement(3724401..3725213) 1 NC_011415.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3725213 7001993 ECSE_3608 Escherichia coli SE11 FKBP-type peptidyl-prolyl cis-trans isomerase YP_002294883.1 3724401 R 409438 CDS YP_002294884.1 209920800 7001994 3725434..3725652 1 NC_011415.1 hypothetical protein 3725652 7001994 ECSE_3609 Escherichia coli SE11 hypothetical protein YP_002294884.1 3725434 D 409438 CDS YP_002294885.1 209920801 7001995 complement(3725701..3726291) 1 NC_011415.1 rotamase; FKBP-type peptidyl-prolyl cis-trans isomerase 3726291 7001995 ECSE_3610 Escherichia coli SE11 FKBP-type peptidyl-prolyl cis-trans isomerase YP_002294885.1 3725701 R 409438 CDS YP_002294886.1 209920802 7001996 complement(3726386..3726586) 1 NC_011415.1 hypothetical protein 3726586 7001996 ECSE_3611 Escherichia coli SE11 hypothetical protein YP_002294886.1 3726386 R 409438 CDS YP_002294887.1 209920803 7001997 complement(3726596..3728401) 1 NC_011415.1 involved in potassium efflux; glutathione-regulated potassium-efflux system protein KefB 3728401 7001997 ECSE_3612 Escherichia coli SE11 glutathione-regulated potassium-efflux system protein KefB YP_002294887.1 3726596 R 409438 CDS YP_002294888.1 209920804 7001998 complement(3728401..3728955) 1 NC_011415.1 required for KefB activity; glutathione-regulated potassium-efflux system ancillary protein KefG 3728955 7001998 ECSE_3613 Escherichia coli SE11 glutathione-regulated potassium-efflux system ancillary protein KefG YP_002294888.1 3728401 R 409438 CDS YP_002294889.1 209920805 7001999 3729083..3730996 1 NC_011415.1 putative ABC transporter ATP-binding protein 3730996 7001999 ECSE_3614 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002294889.1 3729083 D 409438 CDS YP_002294890.1 209920806 7002000 3730996..3732018 1 NC_011415.1 putative hydrolase 3732018 7002000 ECSE_3615 Escherichia coli SE11 putative hydrolase YP_002294890.1 3730996 D 409438 CDS YP_002294891.1 209920807 7002001 3732012..3732230 1 NC_011415.1 hypothetical protein 3732230 7002001 ECSE_3616 Escherichia coli SE11 hypothetical protein YP_002294891.1 3732012 D 409438 CDS YP_002294892.1 209920808 7002002 3732284..3733153 1 NC_011415.1 phosphoribulokinase 3733153 7002002 ECSE_3617 Escherichia coli SE11 phosphoribulokinase YP_002294892.1 3732284 D 409438 CDS YP_002294893.1 209920809 7002003 complement(3733208..3733612) 1 NC_011415.1 hypothetical protein 3733612 7002003 ECSE_3618 Escherichia coli SE11 hypothetical protein YP_002294893.1 3733208 R 409438 CDS YP_002294894.1 209920810 7002004 3733914..3734546 1 NC_011415.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 3734546 7002004 ECSE_3619 Escherichia coli SE11 cAMP-regulatory protein YP_002294894.1 3733914 D 409438 CDS YP_002294895.1 209920811 7002005 3734597..3736687 1 NC_011415.1 hypothetical protein 3736687 7002005 ECSE_3620 Escherichia coli SE11 hypothetical protein YP_002294895.1 3734597 D 409438 CDS YP_002294896.1 209920812 7002006 complement(3736754..3737974) 1 NC_011415.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3737974 argD 7002006 argD Escherichia coli SE11 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_002294896.1 3736754 R 409438 CDS YP_002294897.1 209920813 7002007 complement(3738060..3738623) 1 NC_011415.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity; para-aminobenzoate synthase component II 3738623 7002007 ECSE_3622 Escherichia coli SE11 para-aminobenzoate synthase component II YP_002294897.1 3738060 R 409438 CDS YP_002294898.1 209920814 7002008 complement(3738655..3739257) 1 NC_011415.1 cell filamentation protein Fic 3739257 7002008 ECSE_3623 Escherichia coli SE11 cell filamentation protein Fic YP_002294898.1 3738655 R 409438 CDS YP_002294899.1 209920815 7002009 complement(3739247..3739414) 1 NC_011415.1 hypothetical protein 3739414 7002009 ECSE_3624 Escherichia coli SE11 hypothetical protein YP_002294899.1 3739247 R 409438 CDS YP_002294900.1 209920816 7002010 complement(3739519..3740091) 1 NC_011415.1 peptidyl-prolyl cis-trans isomerase A (rotamase A) 3740091 7002010 ECSE_3625 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase A (rotamase A) YP_002294900.1 3739519 R 409438 CDS YP_002294901.1 209920817 7002011 3740362..3741543 1 NC_011415.1 hypothetical protein 3741543 7002011 ECSE_3626 Escherichia coli SE11 hypothetical protein YP_002294901.1 3740362 D 409438 CDS YP_002294902.1 209920818 7002012 3741805..3744348 1 NC_011415.1 nitrite reductase large subunit 3744348 7002012 ECSE_3627 Escherichia coli SE11 nitrite reductase large subunit YP_002294902.1 3741805 D 409438 CDS YP_002294903.1 209920819 7002013 3744345..3744671 1 NC_011415.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations; nitrite reductase small subunit 3744671 nirD 7002013 nirD Escherichia coli SE11 nitrite reductase small subunit YP_002294903.1 3744345 D 409438 CDS YP_002294904.1 209920820 7002014 3744798..3745604 1 NC_011415.1 member of the FNT family of formate and nitrite transporters; nitrite transporter NirC 3745604 7002014 ECSE_3629 Escherichia coli SE11 nitrite transporter NirC YP_002294904.1 3744798 D 409438 CDS YP_002294905.1 209920821 7002015 3745623..3746996 1 NC_011415.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin; siroheme synthase 3746996 cysG 7002015 cysG Escherichia coli SE11 siroheme synthase YP_002294905.1 3745623 D 409438 CDS YP_002294906.1 209920822 7002016 3747243..3747410 1 NC_011415.1 hypothetical protein 3747410 7002016 ECSE_3631 Escherichia coli SE11 hypothetical protein YP_002294906.1 3747243 D 409438 CDS YP_002294907.1 209920823 7002017 3747705..3749042 1 NC_011415.1 inner membrane protein possibly involved in fructoselysine transport; member of the flr operon; putative fructoselysine transporter 3749042 frlA 7002017 frlA Escherichia coli SE11 putative fructoselysine transporter YP_002294907.1 3747705 D 409438 CDS YP_002294908.1 209920824 7002018 3749063..3750085 1 NC_011415.1 catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine; fructoselysine-6-P-deglycase 3750085 frlB 7002018 frlB Escherichia coli SE11 fructoselysine-6-P-deglycase YP_002294908.1 3749063 D 409438 CDS YP_002294909.1 209920825 7002019 3750135..3750965 1 NC_011415.1 YhfOP; YhfP; YhfO; FrlC; catalyzes the interconversion of fructoselysine and psicoselysine; fructoselysine 3-epimerase 3750965 7002019 ECSE_3634 Escherichia coli SE11 fructoselysine 3-epimerase YP_002294909.1 3750135 D 409438 CDS YP_002294910.1 209920826 7002020 3750962..3751747 1 NC_011415.1 fructoselysine 6-kinase 3751747 7002020 ECSE_3635 Escherichia coli SE11 fructoselysine 6-kinase YP_002294910.1 3750962 D 409438 CDS YP_002294911.1 209920827 7002021 3751781..3752578 1 NC_011415.1 may act as a transcriptional regulator of a putative fructoselysine-induced operon containing the yhfM, yhfN, yhfO, yhfP, yhfQ, and yhfR genes; DNA-binding transcriptional regulator FrlR 3752578 7002021 ECSE_3636 Escherichia coli SE11 DNA-binding transcriptional regulator FrlR YP_002294911.1 3751781 D 409438 CDS YP_002294912.1 209920828 7002022 complement(3752730..3753815) 1 NC_011415.1 hypothetical protein 3753815 7002022 ECSE_3637 Escherichia coli SE11 hypothetical protein YP_002294912.1 3752730 R 409438 CDS YP_002294913.1 209920829 7002023 complement(3753827..3755131) 1 NC_011415.1 putative transport protein 3755131 7002023 ECSE_3638 Escherichia coli SE11 putative transport protein YP_002294913.1 3753827 R 409438 CDS YP_002294914.1 209920830 7002024 complement(3755143..3755496) 1 NC_011415.1 hypothetical protein 3755496 7002024 ECSE_3639 Escherichia coli SE11 hypothetical protein YP_002294914.1 3755143 R 409438 CDS YP_002294915.1 209920831 7002025 complement(3755507..3756385) 1 NC_011415.1 phosphotriesterase homology protein; PhP; YhfV; member of a family of proteins related to phosphotriesterase (PTE); putative hydrolase 3756385 7002025 ECSE_3640 Escherichia coli SE11 putative hydrolase YP_002294915.1 3755507 R 409438 CDS YP_002294916.1 209920832 7002026 complement(3756382..3757608) 1 NC_011415.1 putative mutase 3757608 7002026 ECSE_3641 Escherichia coli SE11 putative mutase YP_002294916.1 3756382 R 409438 CDS YP_002294917.1 209920833 7002027 complement(3757608..3758771) 1 NC_011415.1 hypothetical protein 3758771 7002027 ECSE_3642 Escherichia coli SE11 hypothetical protein YP_002294917.1 3757608 R 409438 CDS YP_002294918.1 209920834 7002028 complement(3758855..3759217) 1 NC_011415.1 hypothetical protein 3759217 7002028 ECSE_3643 Escherichia coli SE11 hypothetical protein YP_002294918.1 3758855 R 409438 CDS YP_002294919.1 209920835 7002029 complement(3759234..3760082) 1 NC_011415.1 hypothetical protein 3760082 7002029 ECSE_3644 Escherichia coli SE11 hypothetical protein YP_002294919.1 3759234 R 409438 CDS YP_002294920.1 209920836 7002030 complement(3760408..3761412) 1 NC_011415.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3761412 7002030 ECSE_3645 Escherichia coli SE11 tryptophanyl-tRNA synthetase YP_002294920.1 3760408 R 409438 CDS YP_002294921.1 209920837 7002031 complement(3761405..3762163) 1 NC_011415.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 3762163 7002031 ECSE_3646 Escherichia coli SE11 phosphoglycolate phosphatase YP_002294921.1 3761405 R 409438 CDS YP_002294922.1 209920838 7002032 complement(3762156..3762833) 1 NC_011415.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 3762833 7002032 ECSE_3647 Escherichia coli SE11 ribulose-phosphate 3-epimerase YP_002294922.1 3762156 R 409438 CDS YP_002294923.1 209920839 7002033 complement(3762851..3763687) 1 NC_011415.1 DNA adenine methylase 3763687 7002033 ECSE_3648 Escherichia coli SE11 DNA adenine methylase YP_002294923.1 3762851 R 409438 CDS YP_002294924.1 209920840 7002034 complement(3763794..3765080) 1 NC_011415.1 hypothetical protein 3765080 7002034 ECSE_3649 Escherichia coli SE11 hypothetical protein YP_002294924.1 3763794 R 409438 CDS YP_002294925.1 209920841 7002035 complement(3765172..3766260) 1 NC_011415.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 3766260 aroB 7002035 aroB Escherichia coli SE11 3-dehydroquinate synthase YP_002294925.1 3765172 R 409438 CDS YP_002294926.1 209920842 7002036 complement(3766317..3766994) 1 NC_011415.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase I 3766994 aroK 7002036 aroK Escherichia coli SE11 shikimate kinase I YP_002294926.1 3766317 R 409438 CDS YP_002294927.1 209920843 7002037 complement(3767239..3768477) 1 NC_011415.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 3768477 hofQ 7002037 hofQ Escherichia coli SE11 outer membrane porin HofQ YP_002294927.1 3767239 R 409438 CDS YP_002294928.1 209920844 7002038 complement(3768389..3768829) 1 NC_011415.1 hypothetical protein 3768829 7002038 ECSE_3653 Escherichia coli SE11 hypothetical protein YP_002294928.1 3768389 R 409438 CDS YP_002294929.1 209920845 7002039 complement(3768783..3769223) 1 NC_011415.1 hypothetical protein 3769223 7002039 ECSE_3654 Escherichia coli SE11 hypothetical protein YP_002294929.1 3768783 R 409438 CDS YP_002294930.1 209920846 7002040 complement(3769207..3769746) 1 NC_011415.1 hypothetical protein 3769746 7002040 ECSE_3655 Escherichia coli SE11 hypothetical protein YP_002294930.1 3769207 R 409438 CDS YP_002294931.1 209920847 7002041 complement(3769746..3770525) 1 NC_011415.1 hypothetical protein 3770525 7002041 ECSE_3656 Escherichia coli SE11 hypothetical protein YP_002294931.1 3769746 R 409438 CDS YP_002294932.1 209920848 7002042 3770621..3773197 1 NC_011415.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits; peptidoglycan synthetase 3773197 mrcA 7002042 mrcA Escherichia coli SE11 peptidoglycan synthetase YP_002294932.1 3770621 D 409438 CDS YP_002294933.1 209920849 7002043 complement(3773362..3773922) 1 NC_011415.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 3773922 nudE 7002043 nudE Escherichia coli SE11 ADP-ribose diphosphatase NudE YP_002294933.1 3773362 R 409438 CDS YP_002294934.1 209920850 7002044 3774123..3774245 1 NC_011415.1 hypothetical protein 3774245 7002044 ECSE_3659 Escherichia coli SE11 hypothetical protein YP_002294934.1 3774123 D 409438 CDS YP_002294935.1 209920851 7002045 3774242..3776377 1 NC_011415.1 putative dehydrogenase 3776377 7002045 ECSE_3660 Escherichia coli SE11 putative dehydrogenase YP_002294935.1 3774242 D 409438 CDS YP_002294936.1 209920852 7002046 3776397..3777110 1 NC_011415.1 putative hydrolase 3777110 7002046 ECSE_3661 Escherichia coli SE11 putative hydrolase YP_002294936.1 3776397 D 409438 CDS YP_002294937.1 209920853 7002047 3777121..3777522 1 NC_011415.1 ribosome-associated heat shock protein Hsp15 3777522 7002047 ECSE_3662 Escherichia coli SE11 ribosome-associated heat shock protein Hsp15 YP_002294937.1 3777121 D 409438 CDS YP_002294938.1 209920854 7002048 3777541..3778425 1 NC_011415.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3778425 hslO 7002048 hslO Escherichia coli SE11 Hsp33-like chaperonin YP_002294938.1 3777541 D 409438 CDS YP_002294939.1 209920855 7002049 complement(3778560..3780284) 1 NC_011415.1 putative transport protein 3780284 7002049 ECSE_3664 Escherichia coli SE11 putative transport protein YP_002294939.1 3778560 R 409438 CDS YP_002294940.1 209920856 7002050 complement(3780360..3780491) 1 NC_011415.1 hypothetical protein 3780491 7002050 ECSE_3665 Escherichia coli SE11 hypothetical protein YP_002294940.1 3780360 R 409438 CDS YP_002294941.1 209920857 7002051 3780663..3782285 1 NC_011415.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 3782285 7002051 ECSE_3666 Escherichia coli SE11 phosphoenolpyruvate carboxykinase YP_002294941.1 3780663 D 409438 CDS YP_002294942.1 209920858 7002052 3782402..3782719 1 NC_011415.1 hypothetical protein 3782719 7002052 ECSE_3667 Escherichia coli SE11 hypothetical protein YP_002294942.1 3782402 D 409438 CDS YP_002294943.1 209920859 7002053 3782778..3783074 1 NC_011415.1 hypothetical protein 3783074 7002053 ECSE_3668 Escherichia coli SE11 hypothetical protein YP_002294943.1 3782778 D 409438 CDS YP_002294944.1 209920860 7002054 complement(3783105..3784457) 1 NC_011415.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR; osmolarity sensor protein 3784457 envZ 7002054 envZ Escherichia coli SE11 osmolarity sensor protein YP_002294944.1 3783105 R 409438 CDS YP_002294945.1 209920861 7002055 complement(3784454..3785173) 1 NC_011415.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3785173 ompR 7002055 ompR Escherichia coli SE11 osmolarity response regulator YP_002294945.1 3784454 R 409438 CDS YP_002294946.1 209920862 7002056 3785401..3785877 1 NC_011415.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 3785877 greB 7002056 greB Escherichia coli SE11 transcription elongation factor GreB YP_002294946.1 3785401 D 409438 CDS YP_002294947.1 209920863 7002057 3785974..3788295 1 NC_011415.1 hypothetical protein 3788295 7002057 ECSE_3672 Escherichia coli SE11 hypothetical protein YP_002294947.1 3785974 D 409438 CDS YP_002294948.1 209920864 7002058 3788330..3788479 1 NC_011415.1 hypothetical protein 3788479 7002058 ECSE_3673 Escherichia coli SE11 hypothetical protein YP_002294948.1 3788330 D 409438 CDS YP_002294949.1 209920865 7002059 3788733..3788960 1 NC_011415.1 ferrous iron transport protein A 3788960 feoA 7002059 feoA Escherichia coli SE11 ferrous iron transport protein A YP_002294949.1 3788733 D 409438 CDS YP_002294950.1 209920866 7002060 3788977..3791298 1 NC_011415.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 3791298 feoB 7002060 feoB Escherichia coli SE11 ferrous iron transport protein B YP_002294950.1 3788977 D 409438 CDS YP_002294951.1 209920867 7002061 3791298..3791534 1 NC_011415.1 hypothetical protein 3791534 7002061 ECSE_3676 Escherichia coli SE11 hypothetical protein YP_002294951.1 3791298 D 409438 CDS YP_002294952.1 209920868 7002062 3791737..3792030 1 NC_011415.1 hypothetical protein 3792030 7002062 ECSE_3677 Escherichia coli SE11 hypothetical protein YP_002294952.1 3791737 D 409438 CDS YP_002294953.1 209920869 7002063 3792043..3792615 1 NC_011415.1 hypothetical protein 3792615 7002063 ECSE_3678 Escherichia coli SE11 hypothetical protein YP_002294953.1 3792043 D 409438 CDS YP_002294954.1 209920870 7002064 complement(3792644..3793414) 1 NC_011415.1 Shows carboxylesterase activity with a preference for short chain fatty acid esters; involved in pimeloyl-CoA synthesis; carboxylesterase BioH 3793414 7002064 ECSE_3679 Escherichia coli SE11 carboxylesterase BioH YP_002294954.1 3792644 R 409438 CDS YP_002294955.1 209920871 7002065 3793452..3794135 1 NC_011415.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 3794135 7002065 ECSE_3680 Escherichia coli SE11 gluconate periplasmic binding protein YP_002294955.1 3793452 D 409438 CDS YP_002294956.1 209920872 7002066 3794194..3794769 1 NC_011415.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 3794769 7002066 ECSE_3681 Escherichia coli SE11 putative DNA uptake protein YP_002294956.1 3794194 D 409438 CDS YP_002294957.1 209920873 7002067 3795130..3796446 1 NC_011415.1 gluconate transport protein 3796446 7002067 ECSE_3682 Escherichia coli SE11 gluconate transport protein YP_002294957.1 3795130 D 409438 CDS YP_002294958.1 209920874 7002068 complement(3796491..3798575) 1 NC_011415.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 3798575 malQ 7002068 malQ Escherichia coli SE11 4-alpha-glucanotransferase YP_002294958.1 3796491 R 409438 CDS YP_002294959.1 209920875 7002069 complement(3798585..3800978) 1 NC_011415.1 maltodextrin phosphorylase 3800978 7002069 ECSE_3684 Escherichia coli SE11 maltodextrin phosphorylase YP_002294959.1 3798585 R 409438 CDS YP_002294960.1 209920876 7002070 3801590..3804295 1 NC_011415.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3804295 7002070 ECSE_3685 Escherichia coli SE11 transcriptional regulator MalT YP_002294960.1 3801590 D 409438 CDS YP_002294961.1 209920877 7002071 complement(3804338..3805357) 1 NC_011415.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 3805357 7002071 ECSE_3686 Escherichia coli SE11 RNA 3'-terminal-phosphate cyclase YP_002294961.1 3804338 R 409438 CDS YP_002294962.1 209920878 7002072 complement(3805358..3806584) 1 NC_011415.1 hypothetical protein 3806584 7002072 ECSE_3687 Escherichia coli SE11 hypothetical protein YP_002294962.1 3805358 R 409438 CDS YP_002294963.1 209920879 7002073 3806773..3808371 1 NC_011415.1 transcriptional activator 3808371 7002073 ECSE_3688 Escherichia coli SE11 transcriptional activator YP_002294963.1 3806773 D 409438 CDS YP_002294964.1 209920880 7002074 complement(3808353..3809111) 1 NC_011415.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism; DNA-binding transcriptional repressor GlpR 3809111 7002074 ECSE_3689 Escherichia coli SE11 DNA-binding transcriptional repressor GlpR YP_002294964.1 3808353 R 409438 CDS YP_002294965.1 209920881 7002075 complement(3809128..3809958) 1 NC_011415.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity; intramembrane serine protease GlpG 3809958 7002075 ECSE_3690 Escherichia coli SE11 intramembrane serine protease GlpG YP_002294965.1 3809128 R 409438 CDS YP_002294966.1 209920882 7002076 complement(3810003..3810329) 1 NC_011415.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 3810329 glpE 7002076 glpE Escherichia coli SE11 thiosulfate sulfurtransferase YP_002294966.1 3810003 R 409438 CDS YP_002294967.1 209920883 7002077 3810519..3812024 1 NC_011415.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3812024 glpD 7002077 glpD Escherichia coli SE11 glycerol-3-phosphate dehydrogenase YP_002294967.1 3810519 D 409438 CDS YP_002294968.1 209920884 7002078 complement(3812078..3812683) 1 NC_011415.1 hypothetical protein 3812683 7002078 ECSE_3693 Escherichia coli SE11 hypothetical protein YP_002294968.1 3812078 R 409438 CDS YP_002294969.1 209920885 7002079 complement(3812686..3813453) 1 NC_011415.1 hypothetical protein 3813453 7002079 ECSE_3694 Escherichia coli SE11 hypothetical protein YP_002294969.1 3812686 R 409438 CDS YP_002294970.1 209920886 7002080 complement(3813456..3814166) 1 NC_011415.1 hypothetical protein 3814166 7002080 ECSE_3695 Escherichia coli SE11 hypothetical protein YP_002294970.1 3813456 R 409438 CDS YP_002294971.1 209920887 7002081 complement(3814181..3815686) 1 NC_011415.1 hypothetical protein 3815686 7002081 ECSE_3696 Escherichia coli SE11 hypothetical protein YP_002294971.1 3814181 R 409438 CDS YP_002294972.1 209920888 7002082 complement(3815814..3818261) 1 NC_011415.1 glycogen phosphorylase 3818261 7002082 ECSE_3697 Escherichia coli SE11 glycogen phosphorylase YP_002294972.1 3815814 R 409438 CDS YP_002294973.1 209920889 7002083 complement(3818280..3819713) 1 NC_011415.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3819713 glgA 7002083 glgA Escherichia coli SE11 glycogen synthase YP_002294973.1 3818280 R 409438 CDS YP_002294974.1 209920890 7002084 complement(3819713..3821008) 1 NC_011415.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3821008 glgC 7002084 glgC Escherichia coli SE11 glucose-1-phosphate adenylyltransferase YP_002294974.1 3819713 R 409438 CDS YP_002294975.1 209920891 7002085 complement(3821026..3822999) 1 NC_011415.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen; glycogen debranching enzyme 3822999 7002085 ECSE_3700 Escherichia coli SE11 glycogen debranching enzyme YP_002294975.1 3821026 R 409438 CDS YP_002294976.1 209920892 7002086 complement(3822996..3825182) 1 NC_011415.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 3825182 7002086 ECSE_3701 Escherichia coli SE11 glycogen branching enzyme YP_002294976.1 3822996 R 409438 CDS YP_002294977.1 209920893 7002087 complement(3825455..3826558) 1 NC_011415.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3826558 7002087 ECSE_3702 Escherichia coli SE11 aspartate-semialdehyde dehydrogenase YP_002294977.1 3825455 R 409438 CDS YP_002294978.1 209920894 7002088 3826751..3827344 1 NC_011415.1 YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP); putative dITP- and XTP- hydrolase 3827344 7002088 ECSE_3703 Escherichia coli SE11 putative dITP- and XTP- hydrolase YP_002294978.1 3826751 D 409438 CDS YP_002294979.1 209920895 7002089 complement(3827401..3828741) 1 NC_011415.1 low affinity gluconate transporter 3828741 7002089 ECSE_3704 Escherichia coli SE11 low affinity gluconate transporter YP_002294979.1 3827401 R 409438 CDS YP_002294980.1 209920896 7002090 complement(3828745..3829272) 1 NC_011415.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate; gluconate kinase 1 3829272 gntK 7002090 gntK Escherichia coli SE11 gluconate kinase 1 YP_002294980.1 3828745 R 409438 CDS YP_002294981.1 209920897 7002091 complement(3829411..3830376) 1 NC_011415.1 regulator of gluconate operon 3830376 7002091 ECSE_3706 Escherichia coli SE11 regulator of gluconate operon YP_002294981.1 3829411 R 409438 CDS YP_002294982.1 209920898 7002092 complement(3830630..3831325) 1 NC_011415.1 hypothetical protein 3831325 7002092 ECSE_3707 Escherichia coli SE11 hypothetical protein YP_002294982.1 3830630 R 409438 CDS YP_002294983.1 209920899 7002093 complement(3831448..3832485) 1 NC_011415.1 putative dehydrogenase 3832485 7002093 ECSE_3708 Escherichia coli SE11 putative dehydrogenase YP_002294983.1 3831448 R 409438 CDS YP_002294984.1 209920900 7002094 3832818..3833306 1 NC_011415.1 YhhY; regulated by the fur regulator; unknown function; putative acetyltransferase YhhY 3833306 7002094 ECSE_3709 Escherichia coli SE11 putative acetyltransferase YhhY YP_002294984.1 3832818 D 409438 CDS YP_002294985.1 209920901 7002095 3833540..3834718 1 NC_011415.1 hypothetical protein 3834718 7002095 ECSE_3710 Escherichia coli SE11 hypothetical protein YP_002294985.1 3833540 D 409438 CDS YP_002294986.1 209920902 7002096 3834715..3835209 1 NC_011415.1 hypothetical protein 3835209 7002096 ECSE_3711 Escherichia coli SE11 hypothetical protein YP_002294986.1 3834715 D 409438 CDS YP_002294987.1 209920903 7002097 3835659..3835943 1 NC_011415.1 hypothetical protein 3835943 7002097 ECSE_3712 Escherichia coli SE11 hypothetical protein YP_002294987.1 3835659 D 409438 CDS YP_002294988.1 209920904 7002098 complement(3835981..3837723) 1 NC_011415.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides; gamma-glutamyltranspeptidase 3837723 ggt 7002098 ggt Escherichia coli SE11 gamma-glutamyltranspeptidase YP_002294988.1 3835981 R 409438 CDS YP_002294989.1 209920905 7002099 3837843..3838283 1 NC_011415.1 hypothetical protein 3838283 7002099 ECSE_3714 Escherichia coli SE11 hypothetical protein YP_002294989.1 3837843 D 409438 CDS YP_002294990.1 209920906 7002100 complement(3838270..3839013) 1 NC_011415.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 3839013 ugpQ 7002100 ugpQ Escherichia coli SE11 cytoplasmic glycerophosphodiester phosphodiesterase YP_002294990.1 3838270 R 409438 CDS YP_002294991.1 209920907 7002101 complement(3839010..3840080) 1 NC_011415.1 part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit 3840080 ugpC 7002101 ugpC Escherichia coli SE11 glycerol-3-phosphate transporter ATP-binding subunit YP_002294991.1 3839010 R 409438 CDS YP_002294992.1 209920908 7002102 complement(3840082..3840927) 1 NC_011415.1 with UgpABC is involved in uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter membrane protein 3840927 7002102 ECSE_3717 Escherichia coli SE11 glycerol-3-phosphate transporter membrane protein YP_002294992.1 3840082 R 409438 CDS YP_002294993.1 209920909 7002103 complement(3840924..3841811) 1 NC_011415.1 with UgpEC is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter permease 3841811 7002103 ECSE_3718 Escherichia coli SE11 glycerol-3-phosphate transporter permease YP_002294993.1 3840924 R 409438 CDS YP_002294994.1 209920910 7002104 complement(3841909..3843225) 1 NC_011415.1 with UgpACE is involved in the uptake of glycerol-3-phosphate; glycerol-3-phosphate transporter periplasmic binding protein 3843225 7002104 ECSE_3719 Escherichia coli SE11 glycerol-3-phosphate transporter periplasmic binding protein YP_002294994.1 3841909 R 409438 CDS YP_002294995.1 209920911 7002105 complement(3843621..3844334) 1 NC_011415.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3844334 livF 7002105 livF Escherichia coli SE11 leucine/isoleucine/valine transporter ATP-binding subunit YP_002294995.1 3843621 R 409438 CDS YP_002294996.1 209920912 7002106 complement(3844336..3845103) 1 NC_011415.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3845103 livG 7002106 livG Escherichia coli SE11 leucine/isoleucine/valine transporter ATP-binding subunit YP_002294996.1 3844336 R 409438 CDS YP_002294997.1 209920913 7002107 complement(3845100..3846377) 1 NC_011415.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3846377 livM 7002107 livM Escherichia coli SE11 leucine/isoleucine/valine transporter permease subunit YP_002294997.1 3845100 R 409438 CDS YP_002294998.1 209920914 7002108 complement(3846374..3847300) 1 NC_011415.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter; branched-chain amino acid transporter permease subunit LivH 3847300 7002108 ECSE_3723 Escherichia coli SE11 branched-chain amino acid transporter permease subunit LivH YP_002294998.1 3846374 R 409438 CDS YP_002294999.1 209920915 7002109 complement(3847348..3848457) 1 NC_011415.1 leucine ABC transporter ABC transporter substrate binding component 3848457 7002109 ECSE_3724 Escherichia coli SE11 leucine ABC transporter ABC transporter substrate binding component YP_002294999.1 3847348 R 409438 CDS YP_002295000.1 209920916 7002110 complement(3848609..3848746) 1 NC_011415.1 hypothetical protein 3848746 7002110 ECSE_3725 Escherichia coli SE11 hypothetical protein YP_002295000.1 3848609 R 409438 CDS YP_002295001.1 209920917 7002111 3848881..3849264 1 NC_011415.1 hypothetical protein 3849264 7002111 ECSE_3726 Escherichia coli SE11 hypothetical protein YP_002295001.1 3848881 D 409438 CDS YP_002295002.1 209920918 7002112 3849273..3849407 1 NC_011415.1 hypothetical protein 3849407 7002112 ECSE_3727 Escherichia coli SE11 hypothetical protein YP_002295002.1 3849273 D 409438 CDS YP_002295003.1 209920919 7002113 complement(3849463..3850566) 1 NC_011415.1 amino acid transport protein 3850566 7002113 ECSE_3728 Escherichia coli SE11 amino acid transport protein YP_002295003.1 3849463 R 409438 CDS YP_002295004.1 209920920 7002114 complement(3850838..3851692) 1 NC_011415.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 3851692 7002114 ECSE_3729 Escherichia coli SE11 RNA polymerase factor sigma-32 YP_002295004.1 3850838 R 409438 CDS YP_002295005.1 209920921 7002115 complement(3851937..3852995) 1 NC_011415.1 putative ABC transporter, membrane protein; cell division protein FtsX 3852995 ftsX 7002115 ftsX Escherichia coli SE11 cell division protein FtsX YP_002295005.1 3851937 R 409438 CDS YP_002295006.1 209920922 7002116 complement(3852988..3853656) 1 NC_011415.1 putative ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions; cell division protein FtsE 3853656 7002116 ECSE_3731 Escherichia coli SE11 cell division protein FtsE YP_002295006.1 3852988 R 409438 CDS YP_002295007.1 209920923 7002117 complement(3853659..3855155) 1 NC_011415.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins; cell division protein FtsY 3855155 7002117 ECSE_3732 Escherichia coli SE11 cell division protein FtsY YP_002295007.1 3853659 R 409438 CDS YP_002295008.1 209920924 7002118 3855305..3855901 1 NC_011415.1 catalyzes the methylation of 16S rRNA at position G966; 16S rRNA m(2)G966-methyltransferase 3855901 rsmD 7002118 rsmD Escherichia coli SE11 16S rRNA m(2)G966-methyltransferase YP_002295008.1 3855305 D 409438 CDS YP_002295009.1 209920925 7002119 3855888..3856160 1 NC_011415.1 hypothetical protein 3856160 7002119 ECSE_3734 Escherichia coli SE11 hypothetical protein YP_002295009.1 3855888 D 409438 CDS YP_002295010.1 209920926 7002120 complement(3856163..3856522) 1 NC_011415.1 hypothetical protein 3856522 7002120 ECSE_3735 Escherichia coli SE11 hypothetical protein YP_002295010.1 3856163 R 409438 CDS YP_002295011.1 209920927 7002121 3856663..3857289 1 NC_011415.1 hypothetical protein 3857289 7002121 ECSE_3736 Escherichia coli SE11 hypothetical protein YP_002295011.1 3856663 D 409438 CDS YP_002295012.1 209920928 7002122 3857363..3859561 1 NC_011415.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury; zinc/cadmium/mercury/lead-transporting ATPase 3859561 zntA 7002122 zntA Escherichia coli SE11 zinc/cadmium/mercury/lead-transporting ATPase YP_002295012.1 3857363 D 409438 CDS YP_002295013.1 209920929 7002123 complement(3859663..3859908) 1 NC_011415.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 3859908 7002123 ECSE_3738 Escherichia coli SE11 sulfur transfer protein SirA YP_002295013.1 3859663 R 409438 CDS YP_002295014.1 209920930 7002124 3860129..3860794 1 NC_011415.1 hypothetical protein 3860794 7002124 ECSE_3739 Escherichia coli SE11 hypothetical protein YP_002295014.1 3860129 D 409438 CDS YP_002295015.1 209920931 7002125 3860867..3861424 1 NC_011415.1 hypothetical protein 3861424 7002125 ECSE_3740 Escherichia coli SE11 hypothetical protein YP_002295015.1 3860867 D 409438 CDS YP_002295016.1 209920932 7002126 complement(3861428..3862687) 1 NC_011415.1 major facilitator superfamily transporter 3862687 7002126 ECSE_3741 Escherichia coli SE11 major facilitator superfamily transporter YP_002295016.1 3861428 R 409438 CDS YP_002295017.1 209920933 7002127 3862777..3863826 1 NC_011415.1 hypothetical protein 3863826 7002127 ECSE_3742 Escherichia coli SE11 hypothetical protein YP_002295017.1 3862777 D 409438 CDS YP_002295018.1 209920934 7002128 3863881..3864468 1 NC_011415.1 holo-(acyl carrier protein) synthase 2 3864468 7002128 ECSE_3743 Escherichia coli SE11 holo-(acyl carrier protein) synthase 2 YP_002295018.1 3863881 D 409438 CDS YP_002295019.1 209920935 7002129 3864579..3866153 1 NC_011415.1 nickel ABC transporter substrate binding component 3866153 7002129 ECSE_3744 Escherichia coli SE11 nickel ABC transporter substrate binding component YP_002295019.1 3864579 D 409438 CDS YP_002295020.1 209920936 7002130 3866153..3867097 1 NC_011415.1 with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 3867097 7002130 ECSE_3745 Escherichia coli SE11 nickel transporter permease NikB YP_002295020.1 3866153 D 409438 CDS YP_002295021.1 209920937 7002131 3867094..3867927 1 NC_011415.1 with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 3867927 nikC 7002131 nikC Escherichia coli SE11 nickel transporter permease NikC YP_002295021.1 3867094 D 409438 CDS YP_002295022.1 209920938 7002132 3867927..3868691 1 NC_011415.1 with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 3868691 nikD 7002132 nikD Escherichia coli SE11 nickel transporter ATP-binding protein NikD YP_002295022.1 3867927 D 409438 CDS YP_002295023.1 209920939 7002133 3868688..3869494 1 NC_011415.1 with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 3869494 nikE 7002133 nikE Escherichia coli SE11 nickel transporter ATP-binding protein NikE YP_002295023.1 3868688 D 409438 CDS YP_002295024.1 209920940 7002134 3869500..3869901 1 NC_011415.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 3869901 7002134 ECSE_3749 Escherichia coli SE11 nickel responsive regulator YP_002295024.1 3869500 D 409438 CDS YP_002295025.1 209920941 7002135 complement(3870021..3870380) 1 NC_011415.1 hypothetical protein 3870380 7002135 ECSE_3750 Escherichia coli SE11 hypothetical protein YP_002295025.1 3870021 R 409438 CDS YP_002295026.1 209920942 7002136 complement(3870725..3871849) 1 NC_011415.1 putative transport protein 3871849 7002136 ECSE_3751 Escherichia coli SE11 putative transport protein YP_002295026.1 3870725 R 409438 CDS YP_002295027.1 209920943 7002137 complement(3871849..3874584) 1 NC_011415.1 putative ABC transporter ATP-binding protein 3874584 7002137 ECSE_3752 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002295027.1 3871849 R 409438 CDS YP_002295028.1 209920944 7002138 complement(3874581..3875648) 1 NC_011415.1 hypothetical protein 3875648 7002138 ECSE_3753 Escherichia coli SE11 hypothetical protein YP_002295028.1 3874581 R 409438 CDS YP_002295029.1 209920945 7002139 complement(3876014..3877636) 1 NC_011415.1 hypothetical protein 3877636 7002139 ECSE_3754 Escherichia coli SE11 hypothetical protein YP_002295029.1 3876014 R 409438 CDS YP_002295030.1 209920946 7002140 complement(3877898..3879487) 1 NC_011415.1 hypothetical protein 3879487 7002140 ECSE_3755 Escherichia coli SE11 hypothetical protein YP_002295030.1 3877898 R 409438 CDS YP_002295031.1 209920947 7002141 3879871..3880923 1 NC_011415.1 hypothetical protein 3880923 7002141 ECSE_3756 Escherichia coli SE11 hypothetical protein YP_002295031.1 3879871 D 409438 CDS YP_002295032.1 209920948 7002142 complement(3881239..3882441) 1 NC_011415.1 hypothetical protein 3882441 7002142 ECSE_3757 Escherichia coli SE11 hypothetical protein YP_002295032.1 3881239 R 409438 CDS YP_002295033.1 209920949 7002143 3882673..3884172 1 NC_011415.1 phosphate transport protein 3884172 7002143 ECSE_3758 Escherichia coli SE11 phosphate transport protein YP_002295033.1 3882673 D 409438 CDS YP_002295034.1 209920950 7002144 complement(3884243..3884578) 1 NC_011415.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress; universal stress protein UspB 3884578 7002144 ECSE_3759 Escherichia coli SE11 universal stress protein UspB YP_002295034.1 3884243 R 409438 CDS YP_002295035.1 209920951 7002145 3884969..3885403 1 NC_011415.1 universal stress protein A 3885403 7002145 ECSE_3760 Escherichia coli SE11 universal stress protein A YP_002295035.1 3884969 D 409438 CDS YP_002295036.1 209920952 7002146 3885721..3887190 1 NC_011415.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function; inner membrane transporter YhiP 3887190 7002146 ECSE_3761 Escherichia coli SE11 inner membrane transporter YhiP YP_002295036.1 3885721 D 409438 CDS YP_002295037.1 209920953 7002147 complement(3887239..3887991) 1 NC_011415.1 predicted SAM-dependent methyltransferase; putative methyltransferase 3887991 7002147 ECSE_3762 Escherichia coli SE11 putative methyltransferase YP_002295037.1 3887239 R 409438 CDS YP_002295038.1 209920954 7002148 complement(3887997..3890039) 1 NC_011415.1 oligopeptidase A 3890039 7002148 ECSE_3763 Escherichia coli SE11 oligopeptidase A YP_002295038.1 3887997 R 409438 CDS YP_002295039.1 209920955 7002149 3890242..3891084 1 NC_011415.1 hypothetical protein 3891084 7002149 ECSE_3764 Escherichia coli SE11 hypothetical protein YP_002295039.1 3890242 D 409438 CDS YP_002295040.1 209920956 7002150 3891156..3892508 1 NC_011415.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 3892508 7002150 ECSE_3765 Escherichia coli SE11 glutathione reductase YP_002295040.1 3891156 D 409438 CDS YP_002295041.1 209920957 7002151 complement(3892562..3892711) 1 NC_011415.1 hypothetical protein 3892711 7002151 ECSE_3766 Escherichia coli SE11 hypothetical protein YP_002295041.1 3892562 R 409438 CDS YP_002295042.1 209920958 7002152 3893385..3893738 1 NC_011415.1 regulates the expression of of the arsRBC involved in resistance to arsenic; DNA-binding transcriptional repressor ArsR 3893738 7002152 ECSE_3767 Escherichia coli SE11 DNA-binding transcriptional repressor ArsR YP_002295042.1 3893385 D 409438 CDS YP_002295043.1 209920959 7002153 3893792..3895081 1 NC_011415.1 arsenite transport protein 3895081 7002153 ECSE_3768 Escherichia coli SE11 arsenite transport protein YP_002295043.1 3893792 D 409438 CDS YP_002295044.1 209920960 7002154 3895094..3895519 1 NC_011415.1 arsenate reductase 3895519 7002154 ECSE_3769 Escherichia coli SE11 arsenate reductase YP_002295044.1 3895094 D 409438 CDS YP_002295045.1 209920961 7002155 complement(3895653..3895949) 1 NC_011415.1 hypothetical protein 3895949 7002155 ECSE_3770 Escherichia coli SE11 hypothetical protein YP_002295045.1 3895653 R 409438 CDS YP_002295046.1 209920962 7002156 3896056..3897057 1 NC_011415.1 hypothetical protein 3897057 7002156 ECSE_3771 Escherichia coli SE11 hypothetical protein YP_002295046.1 3896056 D 409438 CDS YP_002295047.1 209920963 7002157 3897637..3898482 1 NC_011415.1 hypothetical protein 3898482 7002157 ECSE_3772 Escherichia coli SE11 hypothetical protein YP_002295047.1 3897637 D 409438 CDS YP_002295048.1 209920964 7002158 3898677..3898859 1 NC_011415.1 hypothetical protein 3898859 7002158 ECSE_3773 Escherichia coli SE11 hypothetical protein YP_002295048.1 3898677 D 409438 CDS YP_002295049.1 209920965 7002159 3899073..3899672 1 NC_011415.1 hypothetical protein 3899672 7002159 ECSE_3774 Escherichia coli SE11 hypothetical protein YP_002295049.1 3899073 D 409438 CDS YP_002295050.1 209920966 7002160 3899825..3900355 1 NC_011415.1 putative transcriptional regulator 3900355 7002160 ECSE_3775 Escherichia coli SE11 putative transcriptional regulator YP_002295050.1 3899825 D 409438 CDS YP_002295051.1 209920967 7002161 complement(3900397..3901044) 1 NC_011415.1 inner membrane protein involved in cell density-dependent acid resistance; part of the acid fitness island (AFI) of E. coli; putative Mg(2+) transport ATPase 3901044 7002161 ECSE_3776 Escherichia coli SE11 putative Mg(2+) transport ATPase YP_002295051.1 3900397 R 409438 CDS YP_002295052.1 209920968 7002162 complement(3901108..3901434) 1 NC_011415.1 acid-resistance protein 3901434 hdeB 7002162 hdeB Escherichia coli SE11 acid-resistance protein YP_002295052.1 3901108 R 409438 CDS YP_002295053.1 209920969 7002163 complement(3901550..3901882) 1 NC_011415.1 inactive form; acid-resistance protein 3901882 7002163 ECSE_3778 Escherichia coli SE11 acid-resistance protein YP_002295053.1 3901550 R 409438 CDS YP_002295054.1 209920970 7002164 3902137..3902709 1 NC_011415.1 acid-resistance membrane protein 3902709 7002164 ECSE_3779 Escherichia coli SE11 acid-resistance membrane protein YP_002295054.1 3902137 D 409438 CDS YP_002295055.1 209920971 7002165 3903508..3904035 1 NC_011415.1 hypothetical protein 3904035 7002165 ECSE_3780 Escherichia coli SE11 hypothetical protein YP_002295055.1 3903508 D 409438 CDS YP_002295056.1 209920972 7002166 3904079..3904372 1 NC_011415.1 hypothetical protein 3904372 7002166 ECSE_3781 Escherichia coli SE11 hypothetical protein YP_002295056.1 3904079 D 409438 CDS YP_002295057.1 209920973 7002167 3904374..3905531 1 NC_011415.1 with MdtF and tolC is involved in resistance to rhodamine 6G, erythromycin, doxorubicin and other compounds; multidrug efflux system protein MdtE 3905531 7002167 ECSE_3782 Escherichia coli SE11 multidrug efflux system protein MdtE YP_002295057.1 3904374 D 409438 CDS YP_002295058.1 209920974 7002168 3905556..3908669 1 NC_011415.1 multidrug transport protein 3908669 7002168 ECSE_3783 Escherichia coli SE11 multidrug transport protein YP_002295058.1 3905556 D 409438 CDS YP_002295059.1 209920975 7002169 complement(3909032..3909760) 1 NC_011415.1 putative transcriptional regulator 3909760 7002169 ECSE_3784 Escherichia coli SE11 putative transcriptional regulator YP_002295059.1 3909032 R 409438 CDS YP_002295060.1 209920976 7002170 complement(3910128..3910952) 1 NC_011415.1 regulates genes in response to acid and/or during stationary phase; DNA-binding transcriptional regulator GadX 3910952 7002170 ECSE_3785 Escherichia coli SE11 DNA-binding transcriptional regulator GadX YP_002295060.1 3910128 R 409438 CDS YP_002295061.1 209920977 7002171 complement(3911322..3912722) 1 NC_011415.1 glutamate decarboxylase 3912722 7002171 ECSE_3786 Escherichia coli SE11 glutamate decarboxylase YP_002295061.1 3911322 R 409438 CDS YP_002295062.1 209920978 7002172 complement(3912933..3914330) 1 NC_011415.1 putative cytochrome C peroxidase 3914330 7002172 ECSE_3787 Escherichia coli SE11 putative cytochrome C peroxidase YP_002295062.1 3912933 R 409438 CDS YP_002295063.1 209920979 7002173 3914735..3916384 1 NC_011415.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose; trehalase 3916384 treF 7002173 treF Escherichia coli SE11 trehalase YP_002295063.1 3914735 D 409438 CDS YP_002295064.1 209920980 7002174 complement(3916435..3917037) 1 NC_011415.1 putative transcriptional regulator 3917037 7002174 ECSE_3789 Escherichia coli SE11 putative transcriptional regulator YP_002295064.1 3916435 R 409438 CDS YP_002295065.1 209920981 7002175 3917557..3918456 1 NC_011415.1 putative transcriptional regulator 3918456 7002175 ECSE_3790 Escherichia coli SE11 putative transcriptional regulator YP_002295065.1 3917557 D 409438 CDS YP_002295066.1 209920982 7002176 3918505..3919518 1 NC_011415.1 hypothetical protein 3919518 7002176 ECSE_3791 Escherichia coli SE11 hypothetical protein YP_002295066.1 3918505 D 409438 CDS YP_002295067.1 209920983 7002177 3919929..3921251 1 NC_011415.1 putative transport protein 3921251 7002177 ECSE_3792 Escherichia coli SE11 putative transport protein YP_002295067.1 3919929 D 409438 CDS YP_002295068.1 209920984 7002178 complement(3921485..3923545) 1 NC_011415.1 hypothetical protein 3923545 7002178 ECSE_3793 Escherichia coli SE11 hypothetical protein YP_002295068.1 3921485 R 409438 CDS YP_002295069.1 209920985 7002179 complement(3923615..3924382) 1 NC_011415.1 in Escherichia coli this protein is involved in flagellar function; EAL domain-containing protein 3924382 7002179 ECSE_3794 Escherichia coli SE11 EAL domain-containing protein YP_002295069.1 3923615 R 409438 CDS YP_002295070.1 209920986 7002180 3924395..3925543 1 NC_011415.1 ketodeoxygluconokinase 3925543 7002180 ECSE_3795 Escherichia coli SE11 ketodeoxygluconokinase YP_002295070.1 3924395 D 409438 CDS YP_002295071.1 209920987 7002181 complement(3925639..3927135) 1 NC_011415.1 hypothetical protein 3927135 7002181 ECSE_3796 Escherichia coli SE11 hypothetical protein YP_002295071.1 3925639 R 409438 CDS YP_002295072.1 209920988 7002182 complement(3927356..3928642) 1 NC_011415.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 3928642 7002182 ECSE_3797 Escherichia coli SE11 C4-dicarboxylate transporter DctA YP_002295072.1 3927356 R 409438 CDS YP_002295073.1 209920989 7002183 complement(3928825..3930780) 1 NC_011415.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a putative phosphodiesterase protein from E. coli; putative phosphodiesterase 3930780 7002183 ECSE_3798 Escherichia coli SE11 putative phosphodiesterase YP_002295073.1 3928825 R 409438 CDS YP_002295074.1 209920990 7002184 complement(3930895..3934368) 1 NC_011415.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA; cellulose synthase subunit BcsC 3934368 7002184 ECSE_3799 Escherichia coli SE11 cellulose synthase subunit BcsC YP_002295074.1 3930895 R 409438 CDS YP_002295075.1 209920991 7002185 complement(3934350..3935456) 1 NC_011415.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 3935456 7002185 ECSE_3800 Escherichia coli SE11 endo-1,4-D-glucanase YP_002295075.1 3934350 R 409438 CDS YP_002295076.1 209920992 7002186 complement(3935463..3937802) 1 NC_011415.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); cellulose synthase regulator protein 3937802 7002186 ECSE_3801 Escherichia coli SE11 cellulose synthase regulator protein YP_002295076.1 3935463 R 409438 CDS YP_002295077.1 209920993 7002187 complement(3937813..3940479) 1 NC_011415.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis; cellulose synthase catalytic subunit 3940479 bcsA 7002187 bcsA Escherichia coli SE11 cellulose synthase catalytic subunit YP_002295077.1 3937813 R 409438 CDS YP_002295078.1 209920994 7002188 complement(3940428..3941180) 1 NC_011415.1 cell division protein 3941180 7002188 ECSE_3803 Escherichia coli SE11 cell division protein YP_002295078.1 3940428 R 409438 CDS YP_002295079.1 209920995 7002189 complement(3941192..3941380) 1 NC_011415.1 hypothetical protein 3941380 7002189 ECSE_3804 Escherichia coli SE11 hypothetical protein YP_002295079.1 3941192 R 409438 CDS YP_002295080.1 209920996 7002190 3941653..3943224 1 NC_011415.1 hypothetical protein 3943224 7002190 ECSE_3805 Escherichia coli SE11 hypothetical protein YP_002295080.1 3941653 D 409438 CDS YP_002295081.1 209920997 7002191 3943221..3943412 1 NC_011415.1 hypothetical protein 3943412 7002191 ECSE_3806 Escherichia coli SE11 hypothetical protein YP_002295081.1 3943221 D 409438 CDS YP_002295082.1 209920998 7002192 3943409..3945088 1 NC_011415.1 hypothetical protein 3945088 7002192 ECSE_3807 Escherichia coli SE11 hypothetical protein YP_002295082.1 3943409 D 409438 CDS YP_002295083.1 209920999 7002193 complement(3945175..3945417) 1 NC_011415.1 hypothetical protein 3945417 7002193 ECSE_3808 Escherichia coli SE11 hypothetical protein YP_002295083.1 3945175 R 409438 CDS YP_002295084.1 209921000 7002194 complement(3945658..3945855) 1 NC_011415.1 hypothetical protein 3945855 7002194 ECSE_3809 Escherichia coli SE11 hypothetical protein YP_002295084.1 3945658 R 409438 CDS YP_002295085.1 209921001 7002195 complement(3946141..3946308) 1 NC_011415.1 hypothetical protein 3946308 7002195 ECSE_3810 Escherichia coli SE11 hypothetical protein YP_002295085.1 3946141 R 409438 CDS YP_002295086.1 209921002 7002196 complement(3946413..3946574) 1 NC_011415.1 hypothetical protein 3946574 7002196 ECSE_3811 Escherichia coli SE11 hypothetical protein YP_002295086.1 3946413 R 409438 CDS YP_002295087.1 209921003 7002197 3946724..3947995 1 NC_011415.1 putative transport protein 3947995 7002197 ECSE_3812 Escherichia coli SE11 putative transport protein YP_002295087.1 3946724 D 409438 CDS YP_002295088.1 209921004 7002198 complement(3948025..3949029) 1 NC_011415.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 3949029 dppF 7002198 dppF Escherichia coli SE11 dipeptide transporter ATP-binding subunit YP_002295088.1 3948025 R 409438 CDS YP_002295089.1 209921005 7002199 complement(3949026..3950009) 1 NC_011415.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; dipeptide transporter ATP-binding subunit 3950009 dppD 7002199 dppD Escherichia coli SE11 dipeptide transporter ATP-binding subunit YP_002295089.1 3949026 R 409438 CDS YP_002295090.1 209921006 7002200 complement(3950020..3950922) 1 NC_011415.1 dipeptide transporter 3950922 7002200 ECSE_3815 Escherichia coli SE11 dipeptide transporter YP_002295090.1 3950020 R 409438 CDS YP_002295091.1 209921007 7002201 complement(3950932..3951951) 1 NC_011415.1 transports peptides consisting of two or three amino acids; dipeptide transporter permease DppB 3951951 7002201 ECSE_3816 Escherichia coli SE11 dipeptide transporter permease DppB YP_002295091.1 3950932 R 409438 CDS YP_002295092.1 209921008 7002202 complement(3952102..3953709) 1 NC_011415.1 dipeptide ABC transporter substrate binding component 3953709 7002202 ECSE_3817 Escherichia coli SE11 dipeptide ABC transporter substrate binding component YP_002295092.1 3952102 R 409438 CDS YP_002295093.1 209921009 7002203 3953898..3954053 1 NC_011415.1 hypothetical protein 3954053 7002203 ECSE_3818 Escherichia coli SE11 hypothetical protein YP_002295093.1 3953898 D 409438 CDS YP_002295094.1 209921010 7003125 complement(3954790..3956514) 1 NC_011415.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide; phosphoethanolamine transferase 3956514 7003125 ECSE_3819 Escherichia coli SE11 phosphoethanolamine transferase YP_002295094.1 3954790 R 409438 CDS YP_002295095.1 209921011 7002205 complement(3956805..3958013) 1 NC_011415.1 oxalate/formate antiporter protein 3958013 7002205 ECSE_3820 Escherichia coli SE11 oxalate/formate antiporter protein YP_002295095.1 3956805 R 409438 CDS YP_002295096.1 209921012 7002206 complement(3958242..3958940) 1 NC_011415.1 putative lipase 3958940 7002206 ECSE_3821 Escherichia coli SE11 putative lipase YP_002295096.1 3958242 R 409438 CDS YP_002295097.1 209921013 7002207 3959098..3959661 1 NC_011415.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine; 3-methyl-adenine DNA glycosylase I 3959661 7002207 ECSE_3822 Escherichia coli SE11 3-methyl-adenine DNA glycosylase I YP_002295097.1 3959098 D 409438 CDS YP_002295098.1 209921014 7002208 3959658..3960098 1 NC_011415.1 hypothetical protein 3960098 7002208 ECSE_3823 Escherichia coli SE11 hypothetical protein YP_002295098.1 3959658 D 409438 CDS YP_002295099.1 209921015 7002209 complement(3960067..3962286) 1 NC_011415.1 biotin sulfoxide reductase 3962286 7002209 ECSE_3824 Escherichia coli SE11 biotin sulfoxide reductase YP_002295099.1 3960067 R 409438 CDS YP_002295100.1 209921016 7002210 3962553..3963212 1 NC_011415.1 putative outer membrane lipoprotein 3963212 7002210 ECSE_3825 Escherichia coli SE11 putative outer membrane lipoprotein YP_002295100.1 3962553 D 409438 CDS YP_002295101.1 209921017 7002211 3963316..3964290 1 NC_011415.1 putative 2-ketogluconate reductase 3964290 7002211 ECSE_3826 Escherichia coli SE11 putative 2-ketogluconate reductase YP_002295101.1 3963316 D 409438 CDS YP_002295102.1 209921018 7002212 complement(3964340..3965050) 1 NC_011415.1 hypothetical protein 3965050 7002212 ECSE_3827 Escherichia coli SE11 hypothetical protein YP_002295102.1 3964340 R 409438 CDS YP_002295103.1 209921019 7002213 complement(3965167..3965319) 1 NC_011415.1 hypothetical protein 3965319 7002213 ECSE_3828 Escherichia coli SE11 hypothetical protein YP_002295103.1 3965167 R 409438 CDS YP_002295104.1 209921020 7002214 3965484..3965774 1 NC_011415.1 putative transcriptional regulator 3965774 7002214 ECSE_3829 Escherichia coli SE11 putative transcriptional regulator YP_002295104.1 3965484 D 409438 CDS YP_002295105.1 209921021 7002215 3966055..3966267 1 NC_011415.1 major cold shock protein 3966267 7002215 ECSE_3830 Escherichia coli SE11 major cold shock protein YP_002295105.1 3966055 D 409438 CDS YP_002295106.1 209921022 7002216 complement(3966455..3966667) 1 NC_011415.1 small toxic polypeptide 3966667 7002216 ECSE_3831 Escherichia coli SE11 small toxic polypeptide YP_002295106.1 3966455 R 409438 CDS YP_002295107.1 209921023 7002217 complement(3966933..3969002) 1 NC_011415.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 3969002 glyS 7002217 glyS Escherichia coli SE11 glycyl-tRNA synthetase subunit beta YP_002295107.1 3966933 R 409438 CDS YP_002295108.1 209921024 7002218 complement(3969012..3969923) 1 NC_011415.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 3969923 glyQ 7002218 glyQ Escherichia coli SE11 glycyl-tRNA synthetase subunit alpha YP_002295108.1 3969012 R 409438 CDS YP_002295109.1 209921025 7002219 complement(3970018..3970317) 1 NC_011415.1 hypothetical protein 3970317 7002219 ECSE_3834 Escherichia coli SE11 hypothetical protein YP_002295109.1 3970018 R 409438 CDS YP_002295110.1 209921026 7002220 3970492..3971487 1 NC_011415.1 hypothetical protein 3971487 7002220 ECSE_3835 Escherichia coli SE11 hypothetical protein YP_002295110.1 3970492 D 409438 CDS YP_002295111.1 209921027 7002221 complement(3971529..3971969) 1 NC_011415.1 hypothetical protein 3971969 7002221 ECSE_3836 Escherichia coli SE11 hypothetical protein YP_002295111.1 3971529 R 409438 CDS YP_002295112.1 209921028 7002222 complement(3972012..3972353) 1 NC_011415.1 hypothetical protein 3972353 7002222 ECSE_3837 Escherichia coli SE11 hypothetical protein YP_002295112.1 3972012 R 409438 CDS YP_002295113.1 209921029 7002223 complement(3972522..3973976) 1 NC_011415.1 xylulokinase 3973976 7002223 ECSE_3838 Escherichia coli SE11 xylulokinase YP_002295113.1 3972522 R 409438 CDS YP_002295114.1 209921030 7002224 complement(3974048..3975370) 1 NC_011415.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 3975370 7002224 ECSE_3839 Escherichia coli SE11 xylose isomerase YP_002295114.1 3974048 R 409438 CDS YP_002295115.1 209921031 7002225 complement(3975453..3975590) 1 NC_011415.1 hypothetical protein 3975590 7002225 ECSE_3840 Escherichia coli SE11 hypothetical protein YP_002295115.1 3975453 R 409438 CDS YP_002295116.1 209921032 7002226 3975736..3976728 1 NC_011415.1 periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 3976728 xylF 7002226 xylF Escherichia coli SE11 D-xylose transporter subunit XylF YP_002295116.1 3975736 D 409438 CDS YP_002295117.1 209921033 7002227 3976806..3978347 1 NC_011415.1 with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 3978347 7002227 ECSE_3842 Escherichia coli SE11 xylose transporter ATP-binding subunit YP_002295117.1 3976806 D 409438 CDS YP_002295118.1 209921034 7002228 3978325..3979506 1 NC_011415.1 D-xylose ABC transporter permease 3979506 7002228 ECSE_3843 Escherichia coli SE11 D-xylose ABC transporter permease YP_002295118.1 3978325 D 409438 CDS YP_002295119.1 209921035 7002229 3979584..3979988 1 NC_011415.1 truncated xylose operon regulator 3979988 7002229 ECSE_3844 Escherichia coli SE11 truncated xylose operon regulator YP_002295119.1 3979584 D 409438 CDS YP_002295120.1 209921036 7002230 3980046..3980762 1 NC_011415.1 truncated xylose operon regulator 3980762 7002230 ECSE_3845 Escherichia coli SE11 truncated xylose operon regulator YP_002295120.1 3980046 D 409438 CDS YP_002295121.1 209921037 7002231 complement(3980870..3981694) 1 NC_011415.1 hypothetical protein 3981694 7002231 ECSE_3846 Escherichia coli SE11 hypothetical protein YP_002295121.1 3980870 R 409438 CDS YP_002295122.1 209921038 7002232 3982014..3984044 1 NC_011415.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase precursor 3984044 malS 7002232 malS Escherichia coli SE11 periplasmic alpha-amylase precursor YP_002295122.1 3982014 D 409438 CDS YP_002295123.1 209921039 7002233 3984222..3985475 1 NC_011415.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase 3985475 avtA 7002233 avtA Escherichia coli SE11 valine--pyruvate transaminase YP_002295123.1 3984222 D 409438 CDS YP_002295124.1 209921040 7002234 complement(3985627..3986100) 1 NC_011415.1 putative electron transport protein 3986100 7002234 ECSE_3849 Escherichia coli SE11 putative electron transport protein YP_002295124.1 3985627 R 409438 CDS YP_002295125.1 209921041 7002235 complement(3986202..3987050) 1 NC_011415.1 putative transcriptional regulator 3987050 7002235 ECSE_3850 Escherichia coli SE11 putative transcriptional regulator YP_002295125.1 3986202 R 409438 CDS YP_002295126.1 209921042 7002236 3987251..3988249 1 NC_011415.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 3988249 7002236 ECSE_3851 Escherichia coli SE11 2,3-diketo-L-gulonate reductase YP_002295126.1 3987251 D 409438 CDS YP_002295127.1 209921043 7002237 3988261..3988728 1 NC_011415.1 hypothetical protein 3988728 7002237 ECSE_3852 Escherichia coli SE11 hypothetical protein YP_002295127.1 3988261 D 409438 CDS YP_002295128.1 209921044 7002238 3988846..3989319 1 NC_011415.1 membrane-spanning protein involved in uptake of 2,3-diketo-L-gulonate; part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO; 2,3-diketo-L-gulonate TRAP transporter small permease YiaM 3989319 7002238 ECSE_3853 Escherichia coli SE11 2,3-diketo-L-gulonate TRAP transporter small permease YiaM YP_002295128.1 3988846 D 409438 CDS YP_002295129.1 209921045 7002239 3989322..3990599 1 NC_011415.1 putative transport protein 3990599 7002239 ECSE_3854 Escherichia coli SE11 putative transport protein YP_002295129.1 3989322 D 409438 CDS YP_002295130.1 209921046 7002240 3990612..3991598 1 NC_011415.1 putative ABC transporter substrate binding component 3991598 7002240 ECSE_3855 Escherichia coli SE11 putative ABC transporter substrate binding component YP_002295130.1 3990612 D 409438 CDS YP_002295131.1 209921047 7002241 3991602..3993098 1 NC_011415.1 putative L-xylulose kinase 3993098 7002241 ECSE_3856 Escherichia coli SE11 putative L-xylulose kinase YP_002295131.1 3991602 D 409438 CDS YP_002295132.1 209921048 7002242 3993095..3993757 1 NC_011415.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate; 3-keto-L-gulonate-6-phosphate decarboxylase 3993757 sgbH 7002242 sgbH Escherichia coli SE11 3-keto-L-gulonate-6-phosphate decarboxylase YP_002295132.1 3993095 D 409438 CDS YP_002295133.1 209921049 7002243 3993750..3994610 1 NC_011415.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 3994610 7002243 ECSE_3858 Escherichia coli SE11 putative L-xylulose 5-phosphate 3-epimerase YP_002295133.1 3993750 D 409438 CDS YP_002295134.1 209921050 7002244 3994604..3995299 1 NC_011415.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 3995299 sgbE 7002244 sgbE Escherichia coli SE11 L-ribulose-5-phosphate 4-epimerase YP_002295134.1 3994604 D 409438 CDS YP_002295135.1 209921051 7002245 complement(3995646..3996386) 1 NC_011415.1 hypothetical protein 3996386 7002245 ECSE_3860 Escherichia coli SE11 hypothetical protein YP_002295135.1 3995646 R 409438 CDS YP_002295136.1 209921052 7002246 3996510..3997484 1 NC_011415.1 putative transcriptional regulator 3997484 7002246 ECSE_3861 Escherichia coli SE11 putative transcriptional regulator YP_002295136.1 3996510 D 409438 CDS YP_002295137.1 209921053 7002247 complement(3997481..3998617) 1 NC_011415.1 hypothetical protein 3998617 7002247 ECSE_3862 Escherichia coli SE11 hypothetical protein YP_002295137.1 3997481 R 409438 CDS YP_002295138.1 209921054 7002248 complement(3998623..3998946) 1 NC_011415.1 hypothetical protein 3998946 7002248 ECSE_3863 Escherichia coli SE11 hypothetical protein YP_002295138.1 3998623 R 409438 CDS YP_002295139.1 209921055 7002249 3999060..3999272 1 NC_011415.1 hypothetical protein 3999272 7002249 ECSE_3864 Escherichia coli SE11 hypothetical protein YP_002295139.1 3999060 D 409438 CDS YP_002295140.1 209921056 7002250 complement(3999491..4001119) 1 NC_011415.1 aldehyde dehydrogenase 4001119 7002250 ECSE_3865 Escherichia coli SE11 aldehyde dehydrogenase YP_002295140.1 3999491 R 409438 CDS YP_002295141.1 209921057 7002251 complement(4001194..4002345) 1 NC_011415.1 putative alcohol dehydrogenase 4002345 7002251 ECSE_3866 Escherichia coli SE11 putative alcohol dehydrogenase YP_002295141.1 4001194 R 409438 CDS YP_002295142.1 209921058 7002252 complement(4002535..4004379) 1 NC_011415.1 selenocysteinyl-tRNA-specific translation factor 4004379 7002252 ECSE_3867 Escherichia coli SE11 selenocysteinyl-tRNA-specific translation factor YP_002295142.1 4002535 R 409438 CDS YP_002295143.1 209921059 7002253 complement(4004376..4005767) 1 NC_011415.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 4005767 7002253 ECSE_3868 Escherichia coli SE11 selenocysteine synthase YP_002295143.1 4004376 R 409438 CDS YP_002295144.1 209921060 7002254 complement(4005865..4006473) 1 NC_011415.1 putative glutathione S-transferase 4006473 7002254 ECSE_3869 Escherichia coli SE11 putative glutathione S-transferase YP_002295144.1 4005865 R 409438 CDS YP_002295145.1 209921061 7002255 4006702..4010937 1 NC_011415.1 Rhs core protein 4010937 7002255 ECSE_3870 Escherichia coli SE11 Rhs core protein YP_002295145.1 4006702 D 409438 CDS YP_002295146.1 209921062 7002256 4011397..4012239 1 NC_011415.1 hypothetical protein 4012239 7002256 ECSE_3871 Escherichia coli SE11 hypothetical protein YP_002295146.1 4011397 D 409438 CDS YP_002295147.1 209921063 7002257 4012281..4013225 1 NC_011415.1 putative truncated Rhs core protein 4013225 7002257 ECSE_3872 Escherichia coli SE11 putative truncated Rhs core protein YP_002295147.1 4012281 D 409438 CDS YP_002295148.1 209921064 7002258 4013237..4013698 1 NC_011415.1 hypothetical protein 4013698 7002258 ECSE_3873 Escherichia coli SE11 hypothetical protein YP_002295148.1 4013237 D 409438 CDS YP_002295149.1 209921065 7002259 4014405..4014842 1 NC_011415.1 hypothetical protein 4014842 7002259 ECSE_3874 Escherichia coli SE11 hypothetical protein YP_002295149.1 4014405 D 409438 CDS YP_002295150.1 209921066 7002260 complement(4015302..4016438) 1 NC_011415.1 hypothetical protein 4016438 7002260 ECSE_3875 Escherichia coli SE11 hypothetical protein YP_002295150.1 4015302 R 409438 CDS YP_002295151.1 209921067 7002261 complement(4016441..4016803) 1 NC_011415.1 hypothetical protein 4016803 7002261 ECSE_3876 Escherichia coli SE11 hypothetical protein YP_002295151.1 4016441 R 409438 CDS YP_002295152.1 209921068 7002262 4017340..4019253 1 NC_011415.1 PTS system mannitol-specific IIABC components 4019253 7002262 ECSE_3877 Escherichia coli SE11 PTS system mannitol-specific IIABC components YP_002295152.1 4017340 D 409438 CDS YP_002295153.1 209921069 7002263 4019293..4019427 1 NC_011415.1 hypothetical protein 4019427 7002263 ECSE_3878 Escherichia coli SE11 hypothetical protein YP_002295153.1 4019293 D 409438 CDS YP_002295154.1 209921070 7002264 4019483..4020631 1 NC_011415.1 mannitol-1-phosphate 5-dehydrogenase 4020631 7002264 ECSE_3879 Escherichia coli SE11 mannitol-1-phosphate 5-dehydrogenase YP_002295154.1 4019483 D 409438 CDS YP_002295155.1 209921071 7002265 4020631..4021218 1 NC_011415.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 4021218 mtlR 7002265 mtlR Escherichia coli SE11 mannitol repressor protein YP_002295155.1 4020631 D 409438 CDS YP_002295156.1 209921072 7002266 complement(4021230..4021439) 1 NC_011415.1 hypothetical protein 4021439 7002266 ECSE_3881 Escherichia coli SE11 hypothetical protein YP_002295156.1 4021230 R 409438 CDS YP_002295157.1 209921073 7002267 4021724..4022086 1 NC_011415.1 hypothetical protein 4022086 7002267 ECSE_3882 Escherichia coli SE11 hypothetical protein YP_002295157.1 4021724 D 409438 CDS YP_002295158.1 209921074 7002268 4022630..4023313 1 NC_011415.1 hypothetical protein 4023313 7002268 ECSE_3883 Escherichia coli SE11 hypothetical protein YP_002295158.1 4022630 D 409438 CDS YP_002295159.1 209921075 7002269 4023357..4028207 1 NC_011415.1 putative autotransporter 4028207 7002269 ECSE_3884 Escherichia coli SE11 putative autotransporter YP_002295159.1 4023357 D 409438 CDS YP_002295160.1 209921076 7002270 4028576..4030231 1 NC_011415.1 L-lactate permease 4030231 7002270 ECSE_3885 Escherichia coli SE11 L-lactate permease YP_002295160.1 4028576 D 409438 CDS YP_002295161.1 209921077 7002271 4030231..4031007 1 NC_011415.1 represses the lctPRD operon; DNA-binding transcriptional repressor LldR 4031007 7002271 ECSE_3886 Escherichia coli SE11 DNA-binding transcriptional repressor LldR YP_002295161.1 4030231 D 409438 CDS YP_002295162.1 209921078 7002272 4031004..4032194 1 NC_011415.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 4032194 lldD 7002272 lldD Escherichia coli SE11 L-lactate dehydrogenase YP_002295162.1 4031004 D 409438 CDS YP_002295163.1 209921079 7002273 4032380..4032853 1 NC_011415.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates; putative tRNA/rRNA methyltransferase YibK 4032853 7002273 ECSE_3888 Escherichia coli SE11 putative tRNA/rRNA methyltransferase YibK YP_002295163.1 4032380 D 409438 CDS YP_002295164.1 209921080 7002274 complement(4032906..4033727) 1 NC_011415.1 catalyzes the O-acetylation of serine; serine acetyltransferase 4033727 cysE 7002274 cysE Escherichia coli SE11 serine acetyltransferase YP_002295164.1 4032906 R 409438 CDS YP_002295165.1 209921081 7002275 complement(4033807..4034826) 1 NC_011415.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 4034826 gpsA 7002275 gpsA Escherichia coli SE11 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002295165.1 4033807 R 409438 CDS YP_002295166.1 209921082 7002276 complement(4034826..4035293) 1 NC_011415.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4035293 7002276 ECSE_3891 Escherichia coli SE11 preprotein translocase subunit SecB YP_002295166.1 4034826 R 409438 CDS YP_002295167.1 209921083 7002277 complement(4035356..4035607) 1 NC_011415.1 glutaredoxin 3 4035607 7002277 ECSE_3892 Escherichia coli SE11 glutaredoxin 3 YP_002295167.1 4035356 R 409438 CDS YP_002295168.1 209921084 7002278 complement(4035748..4036179) 1 NC_011415.1 hypothetical protein 4036179 7002278 ECSE_3893 Escherichia coli SE11 hypothetical protein YP_002295168.1 4035748 R 409438 CDS YP_002295169.1 209921085 7002279 4036203..4036400 1 NC_011415.1 hypothetical protein 4036400 7002279 ECSE_3894 Escherichia coli SE11 hypothetical protein YP_002295169.1 4036203 D 409438 CDS YP_002295170.1 209921086 7002280 4036424..4037968 1 NC_011415.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4037968 7002280 ECSE_3895 Escherichia coli SE11 phosphoglyceromutase YP_002295170.1 4036424 D 409438 CDS YP_002295171.1 209921087 7002281 4038002..4039261 1 NC_011415.1 hypothetical protein 4039261 7002281 ECSE_3896 Escherichia coli SE11 hypothetical protein YP_002295171.1 4038002 D 409438 CDS YP_002295172.1 209921088 7002282 4039265..4040224 1 NC_011415.1 hypothetical protein 4040224 7002282 ECSE_3897 Escherichia coli SE11 hypothetical protein YP_002295172.1 4039265 D 409438 CDS YP_002295173.1 209921089 7002283 complement(4040211..4041245) 1 NC_011415.1 putative glycosyl transferase 4041245 7002283 ECSE_3898 Escherichia coli SE11 putative glycosyl transferase YP_002295173.1 4040211 R 409438 CDS YP_002295174.1 209921090 7002284 complement(4041484..4042509) 1 NC_011415.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 4042509 tdh 7002284 tdh Escherichia coli SE11 L-threonine 3-dehydrogenase YP_002295174.1 4041484 R 409438 CDS YP_002295175.1 209921091 7002285 complement(4042519..4043715) 1 NC_011415.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 4043715 7002285 ECSE_3900 Escherichia coli SE11 2-amino-3-ketobutyrate coenzyme A ligase YP_002295175.1 4042519 R 409438 CDS YP_002295176.1 209921092 7002286 complement(4043990..4044862) 1 NC_011415.1 hypothetical protein 4044862 7002286 ECSE_3901 Escherichia coli SE11 hypothetical protein YP_002295176.1 4043990 R 409438 CDS YP_002295177.1 209921093 7002287 4045151..4046083 1 NC_011415.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase 4046083 rfaD 7002287 rfaD Escherichia coli SE11 ADP-L-glycero-D-mannoheptose-6-epimerase YP_002295177.1 4045151 D 409438 CDS YP_002295178.1 209921094 7002288 4046093..4047139 1 NC_011415.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 4047139 7002288 ECSE_3903 Escherichia coli SE11 ADP-heptose:LPS heptosyltransferase II YP_002295178.1 4046093 D 409438 CDS YP_002295179.1 209921095 7002289 4047143..4048135 1 NC_011415.1 ADP-heptose:LPS heptosyl transferase I 4048135 7002289 ECSE_3904 Escherichia coli SE11 ADP-heptose:LPS heptosyl transferase I YP_002295179.1 4047143 D 409438 CDS YP_002295180.1 209921096 7002290 4048132..4049340 1 NC_011415.1 lipid A-core:surface polymer ligase 4049340 7002290 ECSE_3905 Escherichia coli SE11 lipid A-core:surface polymer ligase YP_002295180.1 4048132 D 409438 CDS YP_002295181.1 209921097 7002291 complement(4049376..4050518) 1 NC_011415.1 lipopolysaccharide 1,2-N-acetylglucosaminetransferase 4050518 7002291 ECSE_3906 Escherichia coli SE11 lipopolysaccharide 1,2-N-acetylglucosaminetransferase YP_002295181.1 4049376 R 409438 CDS YP_002295182.1 209921098 7002292 complement(4050527..4051540) 1 NC_011415.1 putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase 4051540 7002292 ECSE_3907 Escherichia coli SE11 putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase YP_002295182.1 4050527 R 409438 CDS YP_002295183.1 209921099 7002293 complement(4051565..4052272) 1 NC_011415.1 lipopolysaccharide core biosynthesis protein 4052272 7002293 ECSE_3908 Escherichia coli SE11 lipopolysaccharide core biosynthesis protein YP_002295183.1 4051565 R 409438 CDS YP_002295184.1 209921100 7002294 complement(4052298..4053305) 1 NC_011415.1 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase 4053305 7002294 ECSE_3909 Escherichia coli SE11 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase YP_002295184.1 4052298 R 409438 CDS YP_002295185.1 209921101 7002295 complement(4053348..4054154) 1 NC_011415.1 lipopolysaccharide core biosynthesis protein 4054154 7002295 ECSE_3910 Escherichia coli SE11 lipopolysaccharide core biosynthesis protein YP_002295185.1 4053348 R 409438 CDS YP_002295186.1 209921102 7002296 complement(4054138..4055262) 1 NC_011415.1 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase 4055262 7002296 ECSE_3911 Escherichia coli SE11 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase YP_002295186.1 4054138 R 409438 CDS YP_002295187.1 209921103 7002297 complement(4055259..4056281) 1 NC_011415.1 lipopolysaccharide core biosynthesis protein 4056281 7002297 ECSE_3912 Escherichia coli SE11 lipopolysaccharide core biosynthesis protein YP_002295187.1 4055259 R 409438 CDS YP_002295188.1 209921104 7002298 4056730..4058007 1 NC_011415.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 4058007 7002298 ECSE_3913 Escherichia coli SE11 3-deoxy-D-manno-octulosonic-acid transferase YP_002295188.1 4056730 D 409438 CDS YP_002295189.1 209921105 7002299 4058015..4058494 1 NC_011415.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4058494 coaD 7002299 coaD Escherichia coli SE11 phosphopantetheine adenylyltransferase YP_002295189.1 4058015 D 409438 CDS YP_002295190.1 209921106 7002300 complement(4058533..4059342) 1 NC_011415.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4059342 7002300 ECSE_3915 Escherichia coli SE11 formamidopyrimidine-DNA glycosylase YP_002295190.1 4058533 R 409438 CDS YP_002295191.1 209921107 7002301 complement(4059440..4059607) 1 NC_011415.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4059607 rpmG 7002301 rpmG Escherichia coli SE11 50S ribosomal protein L33 YP_002295191.1 4059440 R 409438 CDS YP_002295192.1 209921108 7002302 complement(4059628..4059864) 1 NC_011415.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4059864 rpmB 7002302 rpmB Escherichia coli SE11 50S ribosomal protein L28 YP_002295192.1 4059628 R 409438 CDS YP_002295193.1 209921109 7002303 complement(4060081..4060755) 1 NC_011415.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 4060755 radC 7002303 radC Escherichia coli SE11 DNA repair protein RadC YP_002295193.1 4060081 R 409438 CDS YP_002295194.1 209921110 7002304 4060921..4062141 1 NC_011415.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 4062141 7002304 ECSE_3919 Escherichia coli SE11 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_002295194.1 4060921 D 409438 CDS YP_002295195.1 209921111 7002305 4062119..4062577 1 NC_011415.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4062577 dut 7002305 dut Escherichia coli SE11 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002295195.1 4062119 D 409438 CDS YP_002295196.1 209921112 7002306 4062684..4063280 1 NC_011415.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 4063280 slmA 7002306 slmA Escherichia coli SE11 nucleoid occlusion protein YP_002295196.1 4062684 D 409438 CDS YP_002295197.1 209921113 7002307 complement(4063317..4063958) 1 NC_011415.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4063958 pyrE 7002307 pyrE Escherichia coli SE11 orotate phosphoribosyltransferase YP_002295197.1 4063317 R 409438 CDS YP_002295198.1 209921114 7002308 complement(4064024..4064740) 1 NC_011415.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 4064740 rph 7002308 rph Escherichia coli SE11 ribonuclease PH YP_002295198.1 4064024 R 409438 CDS YP_002295199.1 209921115 7002309 4064867..4065730 1 NC_011415.1 hypothetical protein 4065730 7002309 ECSE_3924 Escherichia coli SE11 hypothetical protein YP_002295199.1 4064867 D 409438 CDS YP_002295200.1 209921116 7002310 complement(4065747..4065887) 1 NC_011415.1 hypothetical protein 4065887 7002310 ECSE_3925 Escherichia coli SE11 hypothetical protein YP_002295200.1 4065747 R 409438 CDS YP_002295201.1 209921117 7002311 4065951..4066775 1 NC_011415.1 DNA-damage-inducible protein D 4066775 dinD 7002311 dinD Escherichia coli SE11 DNA-damage-inducible protein D YP_002295201.1 4065951 D 409438 CDS YP_002295202.1 209921118 7002312 4067067..4067684 1 NC_011415.1 hypothetical protein 4067684 7002312 ECSE_3927 Escherichia coli SE11 hypothetical protein YP_002295202.1 4067067 D 409438 CDS YP_002295203.1 209921119 7002313 complement(4067681..4069198) 1 NC_011415.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 4069198 ligB 7002313 ligB Escherichia coli SE11 NAD-dependent DNA ligase LigB YP_002295203.1 4067681 R 409438 CDS YP_002295204.1 209921120 7002314 complement(4069224..4069487) 1 NC_011415.1 hypothetical protein 4069487 7002314 ECSE_3929 Escherichia coli SE11 hypothetical protein YP_002295204.1 4069224 R 409438 CDS YP_002295205.1 209921121 7002315 4069620..4070243 1 NC_011415.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4070243 gmk 7002315 gmk Escherichia coli SE11 guanylate kinase YP_002295205.1 4069620 D 409438 CDS YP_002295206.1 209921122 7002316 4070298..4070573 1 NC_011415.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4070573 rpoZ 7002316 rpoZ Escherichia coli SE11 DNA-directed RNA polymerase subunit omega YP_002295206.1 4070298 D 409438 CDS YP_002295207.1 209921123 7002317 4070592..4072700 1 NC_011415.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 4072700 7002317 ECSE_3932 Escherichia coli SE11 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002295207.1 4070592 D 409438 CDS YP_002295208.1 209921124 7002318 4072707..4073396 1 NC_011415.1 specifically modifies tRNA at position G18; tRNA guanosine-2'-O-methyltransferase 4073396 7002318 ECSE_3933 Escherichia coli SE11 tRNA guanosine-2'-O-methyltransferase YP_002295208.1 4072707 D 409438 CDS YP_002295209.1 209921125 7002319 4073402..4075483 1 NC_011415.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4075483 7002319 ECSE_3934 Escherichia coli SE11 ATP-dependent DNA helicase RecG YP_002295209.1 4073402 D 409438 CDS YP_002295210.1 209921126 7002320 complement(4075468..4076334) 1 NC_011415.1 hypothetical protein 4076334 7002320 ECSE_3935 Escherichia coli SE11 hypothetical protein YP_002295210.1 4075468 R 409438 CDS YP_002295211.1 209921127 7002321 complement(4076337..4077542) 1 NC_011415.1 glutamate transport protein 4077542 7002321 ECSE_3936 Escherichia coli SE11 glutamate transport protein YP_002295211.1 4076337 R 409438 CDS YP_002295212.1 209921128 7002322 4077822..4079213 1 NC_011415.1 putative purine transport protein 4079213 7002322 ECSE_3937 Escherichia coli SE11 putative purine transport protein YP_002295212.1 4077822 D 409438 CDS YP_002295213.1 209921129 7002323 4079334..4081043 1 NC_011415.1 hypothetical protein 4081043 7002323 ECSE_3938 Escherichia coli SE11 hypothetical protein YP_002295213.1 4079334 D 409438 CDS YP_002295214.1 209921130 7002324 complement(4081096..4083414) 1 NC_011415.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI 4083414 7002324 ECSE_3939 Escherichia coli SE11 alpha-xylosidase YicI YP_002295214.1 4081096 R 409438 CDS YP_002295215.1 209921131 7002325 complement(4083424..4084806) 1 NC_011415.1 may be involved in the transport of galactosides-pentoses-hexuronides; putative transporter 4084806 7002325 ECSE_3940 Escherichia coli SE11 putative transporter YP_002295215.1 4083424 R 409438 CDS YP_002295216.1 209921132 7002326 4085299..4085448 1 NC_011415.1 hypothetical protein 4085448 7002326 ECSE_3941 Escherichia coli SE11 hypothetical protein YP_002295216.1 4085299 D 409438 CDS YP_002295217.1 209921133 7002327 4085830..4087014 1 NC_011415.1 putative sugar transport protein 4087014 7002327 ECSE_3942 Escherichia coli SE11 putative sugar transport protein YP_002295217.1 4085830 D 409438 CDS YP_002295218.1 209921134 7002328 4087125..4088048 1 NC_011415.1 putative transport protein 4088048 7002328 ECSE_3943 Escherichia coli SE11 putative transport protein YP_002295218.1 4087125 D 409438 CDS YP_002295219.1 209921135 7002329 complement(4088052..4088870) 1 NC_011415.1 cytoplasmic membrane lipoprotein-28 4088870 7002329 ECSE_3944 Escherichia coli SE11 cytoplasmic membrane lipoprotein-28 YP_002295219.1 4088052 R 409438 CDS YP_002295220.1 209921136 7002330 4089092..4089385 1 NC_011415.1 hypothetical protein 4089385 7002330 ECSE_3945 Escherichia coli SE11 hypothetical protein YP_002295220.1 4089092 D 409438 CDS YP_002295221.1 209921137 7002331 complement(4089426..4090664) 1 NC_011415.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS; ribonucleoside transporter 4090664 nepI 7002331 nepI Escherichia coli SE11 ribonucleoside transporter YP_002295221.1 4089426 R 409438 CDS YP_002295222.1 209921138 7002332 complement(4090827..4091279) 1 NC_011415.1 hypothetical protein 4091279 7002332 ECSE_3947 Escherichia coli SE11 hypothetical protein YP_002295222.1 4090827 R 409438 CDS YP_002295223.1 209921139 7002333 complement(4091332..4092744) 1 NC_011415.1 hypothetical protein 4092744 7002333 ECSE_3948 Escherichia coli SE11 hypothetical protein YP_002295223.1 4091332 R 409438 CDS YP_002295224.1 209921140 7002334 4092841..4094607 1 NC_011415.1 catalyzes the formation of hypoxanthine from adenine; in E. coli this activity has been detected in mutant strains but not in wild type; cryptic adenine deaminase 4094607 7002334 ECSE_3949 Escherichia coli SE11 cryptic adenine deaminase YP_002295224.1 4092841 D 409438 CDS YP_002295225.1 209921141 7002335 complement(4094652..4096043) 1 NC_011415.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate; sugar phosphate antiporter 4096043 uhpT 7002335 uhpT Escherichia coli SE11 sugar phosphate antiporter YP_002295225.1 4094652 R 409438 CDS YP_002295226.1 209921142 7002336 complement(4096181..4097503) 1 NC_011415.1 membrane protein regulates uhpT expression; regulatory protein UhpC 4097503 7002336 ECSE_3951 Escherichia coli SE11 regulatory protein UhpC YP_002295226.1 4096181 R 409438 CDS YP_002295227.1 209921143 7002337 complement(4097510..4099012) 1 NC_011415.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph; sensory histidine kinase UhpB 4099012 7002337 ECSE_3952 Escherichia coli SE11 sensory histidine kinase UhpB YP_002295227.1 4097510 R 409438 CDS YP_002295228.1 209921144 7002338 complement(4099012..4099602) 1 NC_011415.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; DNA-binding transcriptional activator UhpA 4099602 7002338 ECSE_3953 Escherichia coli SE11 DNA-binding transcriptional activator UhpA YP_002295228.1 4099012 R 409438 CDS YP_002295229.1 209921145 7002339 complement(4099677..4099967) 1 NC_011415.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit 4099967 7002339 ECSE_3954 Escherichia coli SE11 acetolactate synthase 1 regulatory subunit YP_002295229.1 4099677 R 409438 CDS YP_002295230.1 209921146 7002340 complement(4099971..4101659) 1 NC_011415.1 acetolactate synthase catalytic subunit 4101659 7002340 ECSE_3955 Escherichia coli SE11 acetolactate synthase catalytic subunit YP_002295230.1 4099971 R 409438 CDS YP_002295231.1 209921147 7002341 complement(4101765..4101863) 1 NC_011415.1 ilvB operon leader peptide 4101863 7002341 ECSE_3956 Escherichia coli SE11 ilvB operon leader peptide YP_002295231.1 4101765 R 409438 CDS YP_002295232.1 209921148 7002342 complement(4101913..4102050) 1 NC_011415.1 hypothetical protein 4102050 7002342 ECSE_3957 Escherichia coli SE11 hypothetical protein YP_002295232.1 4101913 R 409438 CDS YP_002295233.1 209921149 7002343 4102136..4102294 1 NC_011415.1 hypothetical protein 4102294 7002343 ECSE_3958 Escherichia coli SE11 hypothetical protein YP_002295233.1 4102136 D 409438 CDS YP_002295234.1 209921150 7002344 4102935..4104119 1 NC_011415.1 multidrug efflux protein involved in adaptation to low energy shock; multidrug resistance protein D 4104119 emrD 7002344 emrD Escherichia coli SE11 multidrug resistance protein D YP_002295234.1 4102935 D 409438 CDS YP_002295235.1 209921151 7002345 complement(4104127..4104624) 1 NC_011415.1 putative transcriptional regulator 4104624 7002345 ECSE_3960 Escherichia coli SE11 putative transcriptional regulator YP_002295235.1 4104127 R 409438 CDS YP_002295236.1 209921152 7002346 complement(4104621..4104983) 1 NC_011415.1 hypothetical protein 4104983 7002346 ECSE_3961 Escherichia coli SE11 hypothetical protein YP_002295236.1 4104621 R 409438 CDS YP_002295237.1 209921153 7002347 complement(4104973..4105320) 1 NC_011415.1 hypothetical protein 4105320 7002347 ECSE_3962 Escherichia coli SE11 hypothetical protein YP_002295237.1 4104973 R 409438 CDS YP_002295238.1 209921154 7002348 4105430..4105879 1 NC_011415.1 hypothetical protein 4105879 7002348 ECSE_3963 Escherichia coli SE11 hypothetical protein YP_002295238.1 4105430 D 409438 CDS YP_002295239.1 209921155 7002349 complement(4105926..4107419) 1 NC_011415.1 putative sulfatase 4107419 7002349 ECSE_3964 Escherichia coli SE11 putative sulfatase YP_002295239.1 4105926 R 409438 CDS YP_002295240.1 209921156 7002350 complement(4107416..4109131) 1 NC_011415.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; putative symporter YidK 4109131 7002350 ECSE_3965 Escherichia coli SE11 putative symporter YidK YP_002295240.1 4107416 R 409438 CDS YP_002295241.1 209921157 7002351 4109268..4110191 1 NC_011415.1 putative transcriptional regulator 4110191 7002351 ECSE_3966 Escherichia coli SE11 putative transcriptional regulator YP_002295241.1 4109268 D 409438 CDS YP_002295242.1 209921158 7002352 complement(4110188..4110364) 1 NC_011415.1 truncated 6-phospho-alpha-glucosidase 4110364 7002352 ECSE_3967 Escherichia coli SE11 truncated 6-phospho-alpha-glucosidase YP_002295242.1 4110188 R 409438 CDS YP_002295243.1 209921159 7002353 complement(4110364..4111002) 1 NC_011415.1 truncated 6-phospho-alpha-glucosidase 4111002 7002353 ECSE_3968 Escherichia coli SE11 truncated 6-phospho-alpha-glucosidase YP_002295243.1 4110364 R 409438 CDS YP_002295244.1 209921160 7002354 complement(4111002..4112879) 1 NC_011415.1 putative PTS system component 4112879 7002354 ECSE_3969 Escherichia coli SE11 putative PTS system component YP_002295244.1 4111002 R 409438 CDS YP_002295245.1 209921161 7002355 4112914..4113630 1 NC_011415.1 putative transcriptional regulator 4113630 7002355 ECSE_3970 Escherichia coli SE11 putative transcriptional regulator YP_002295245.1 4112914 D 409438 CDS YP_002295246.1 209921162 7002356 complement(4113627..4115288) 1 NC_011415.1 hypothetical protein 4115288 7002356 ECSE_3971 Escherichia coli SE11 hypothetical protein YP_002295246.1 4113627 R 409438 CDS YP_002295247.1 209921163 7002357 complement(4115485..4115913) 1 NC_011415.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent; heat shock chaperone IbpB 4115913 7002357 ECSE_3972 Escherichia coli SE11 heat shock chaperone IbpB YP_002295247.1 4115485 R 409438 CDS YP_002295248.1 209921164 7002358 complement(4116025..4116438) 1 NC_011415.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; heat shock protein IbpA 4116438 7002358 ECSE_3973 Escherichia coli SE11 heat shock protein IbpA YP_002295248.1 4116025 R 409438 CDS YP_002295249.1 209921165 7002359 4116669..4117076 1 NC_011415.1 hypothetical protein 4117076 7002359 ECSE_3974 Escherichia coli SE11 hypothetical protein YP_002295249.1 4116669 D 409438 CDS YP_002295250.1 209921166 7002360 complement(4117078..4118328) 1 NC_011415.1 hypothetical protein 4118328 7002360 ECSE_3975 Escherichia coli SE11 hypothetical protein YP_002295250.1 4117078 R 409438 CDS YP_002295251.1 209921167 7002361 4118372..4119457 1 NC_011415.1 FAD/NAD(P)-binding domain; putative oxidoreductase 4119457 7002361 ECSE_3976 Escherichia coli SE11 putative oxidoreductase YP_002295251.1 4118372 D 409438 CDS YP_002295252.1 209921168 7002362 complement(4119454..4120791) 1 NC_011415.1 D-galactonate transport protein 4120791 7002362 ECSE_3977 Escherichia coli SE11 D-galactonate transport protein YP_002295252.1 4119454 R 409438 CDS YP_002295253.1 209921169 7002363 complement(4120866..4122014) 1 NC_011415.1 galactonate dehydratase 4122014 7002363 ECSE_3978 Escherichia coli SE11 galactonate dehydratase YP_002295253.1 4120866 R 409438 CDS YP_002295254.1 209921170 7002364 complement(4122011..4122628) 1 NC_011415.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 4122628 7002364 ECSE_3979 Escherichia coli SE11 2-dehydro-3-deoxy-6-phosphogalactonate aldolase YP_002295254.1 4122011 R 409438 CDS YP_002295255.1 209921171 7002365 complement(4122612..4123490) 1 NC_011415.1 2-oxo-3-deoxygalactonate kinase 4123490 7002365 ECSE_3980 Escherichia coli SE11 2-oxo-3-deoxygalactonate kinase YP_002295255.1 4122612 R 409438 CDS YP_002295256.1 209921172 7002366 complement(4123487..4124176) 1 NC_011415.1 galactonate operon transcriptional repressor 4124176 7002366 ECSE_3981 Escherichia coli SE11 galactonate operon transcriptional repressor YP_002295256.1 4123487 R 409438 CDS YP_002295257.1 209921173 7002367 4124454..4125110 1 NC_011415.1 hypothetical protein 4125110 7002367 ECSE_3982 Escherichia coli SE11 hypothetical protein YP_002295257.1 4124454 D 409438 CDS YP_002295258.1 209921174 7002368 complement(4125156..4125968) 1 NC_011415.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins; sugar phosphatase 4125968 7002368 ECSE_3983 Escherichia coli SE11 sugar phosphatase YP_002295258.1 4125156 R 409438 CDS YP_002295259.1 209921175 7002369 complement(4126083..4126481) 1 NC_011415.1 hypothetical protein 4126481 7002369 ECSE_3984 Escherichia coli SE11 hypothetical protein YP_002295259.1 4126083 R 409438 CDS YP_002295260.1 209921176 7002370 complement(4126721..4129135) 1 NC_011415.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4129135 gyrB 7002370 gyrB Escherichia coli SE11 DNA gyrase subunit B YP_002295260.1 4126721 R 409438 CDS YP_002295261.1 209921177 7002371 complement(4129164..4130237) 1 NC_011415.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4130237 recF 7002371 recF Escherichia coli SE11 recombination protein F YP_002295261.1 4129164 R 409438 CDS YP_002295262.1 209921178 7002372 complement(4130237..4131337) 1 NC_011415.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 4131337 7002372 ECSE_3987 Escherichia coli SE11 DNA polymerase III subunit beta YP_002295262.1 4130237 R 409438 CDS YP_002295263.1 209921179 7002373 complement(4131342..4132745) 1 NC_011415.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4132745 dnaA 7002373 dnaA Escherichia coli SE11 chromosomal replication initiation protein YP_002295263.1 4131342 R 409438 CDS YP_002295264.1 209921180 7002374 4133352..4133492 1 NC_011415.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4133492 rpmH 7002374 rpmH Escherichia coli SE11 50S ribosomal protein L34 YP_002295264.1 4133352 D 409438 CDS YP_002295265.1 209921181 7002375 4133509..4133868 1 NC_011415.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4133868 rnpA 7002375 rnpA Escherichia coli SE11 ribonuclease P YP_002295265.1 4133509 D 409438 CDS YP_002295266.1 209921182 7002376 4134092..4135738 1 NC_011415.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 4135738 7002376 ECSE_3991 Escherichia coli SE11 putative inner membrane protein translocase component YidC YP_002295266.1 4134092 D 409438 CDS YP_002295267.1 209921183 7002377 4135844..4137208 1 NC_011415.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4137208 trmE 7002377 trmE Escherichia coli SE11 tRNA modification GTPase TrmE YP_002295267.1 4135844 D 409438 CDS YP_002295268.1 209921184 7002378 4137451..4137525 1 NC_011415.1 tryptophanase leader peptide 4137525 7002378 ECSE_3993 Escherichia coli SE11 tryptophanase leader peptide YP_002295268.1 4137451 D 409438 CDS YP_002295269.1 209921185 7002379 4137746..4139161 1 NC_011415.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 4139161 tnaA 7002379 tnaA Escherichia coli SE11 tryptophanase YP_002295269.1 4137746 D 409438 CDS YP_002295270.1 209921186 7002380 4139252..4140499 1 NC_011415.1 tryptophan transporter of low affinity; tryptophan permease TnaB 4140499 7002380 ECSE_3995 Escherichia coli SE11 tryptophan permease TnaB YP_002295270.1 4139252 D 409438 CDS YP_002295271.1 209921187 7002381 4140632..4141807 1 NC_011415.1 Confers resistance to chloramphenicol; multidrug efflux system protein MdtL 4141807 7002381 ECSE_3996 Escherichia coli SE11 multidrug efflux system protein MdtL YP_002295271.1 4140632 D 409438 CDS YP_002295272.1 209921188 7002382 4141782..4142741 1 NC_011415.1 Involved in anaerobic NO protection; DNA-binding transcriptional regulator YidZ 4142741 7002382 ECSE_3997 Escherichia coli SE11 DNA-binding transcriptional regulator YidZ YP_002295272.1 4141782 D 409438 CDS YP_002295273.1 209921189 7002383 4142898..4143647 1 NC_011415.1 hypothetical protein 4143647 7002383 ECSE_3998 Escherichia coli SE11 hypothetical protein YP_002295273.1 4142898 D 409438 CDS YP_002295274.1 209921190 7002384 4143669..4144235 1 NC_011415.1 hypothetical protein 4144235 7002384 ECSE_3999 Escherichia coli SE11 hypothetical protein YP_002295274.1 4143669 D 409438 CDS YP_002295275.1 209921191 7002385 complement(4144289..4145626) 1 NC_011415.1 hypothetical protein 4145626 7002385 ECSE_4000 Escherichia coli SE11 hypothetical protein YP_002295275.1 4144289 R 409438 CDS YP_002295276.1 209921192 7002386 4145793..4146458 1 NC_011415.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily; 6-phosphogluconate phosphatase 4146458 7002386 ECSE_4001 Escherichia coli SE11 6-phosphogluconate phosphatase YP_002295276.1 4145793 D 409438 CDS YP_002295277.1 209921193 7002387 4146525..4146998 1 NC_011415.1 might be involved in hypersensitivity to nitrofurzone; putative inner membrane protein 4146998 7002387 ECSE_4002 Escherichia coli SE11 putative inner membrane protein YP_002295277.1 4146525 D 409438 CDS YP_002295278.1 209921194 7002388 4147047..4147634 1 NC_011415.1 hypothetical protein 4147634 7002388 ECSE_4003 Escherichia coli SE11 hypothetical protein YP_002295278.1 4147047 D 409438 CDS YP_002295279.1 209921195 7002389 complement(4147696..4148418) 1 NC_011415.1 putative 6-phosphogluconolactonase 4148418 7002389 ECSE_4004 Escherichia coli SE11 putative 6-phosphogluconolactonase YP_002295279.1 4147696 R 409438 CDS YP_002295280.1 209921196 7002390 complement(4148433..4149635) 1 NC_011415.1 hypothetical protein 4149635 7002390 ECSE_4005 Escherichia coli SE11 hypothetical protein YP_002295280.1 4148433 R 409438 CDS YP_002295281.1 209921197 7002391 complement(4149629..4151245) 1 NC_011415.1 hypothetical protein 4151245 7002391 ECSE_4006 Escherichia coli SE11 hypothetical protein YP_002295281.1 4149629 R 409438 CDS YP_002295282.1 209921198 7002392 complement(4151331..4152725) 1 NC_011415.1 6-phospho-beta-glucosidase 4152725 7002392 ECSE_4007 Escherichia coli SE11 6-phospho-beta-glucosidase YP_002295282.1 4151331 R 409438 CDS YP_002295283.1 209921199 7002393 complement(4152744..4154621) 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system beta-glucoside-specific transporter subunits IIABC 4154621 7002393 ECSE_4008 Escherichia coli SE11 PTS system beta-glucoside-specific transporter subunits IIABC YP_002295283.1 4152744 R 409438 CDS YP_002295284.1 209921200 7002394 complement(4154755..4155585) 1 NC_011415.1 positive regulator of the beta-glucoside operon; transcriptional antiterminator; transcriptional antiterminator BglG 4155585 7002394 ECSE_4009 Escherichia coli SE11 transcriptional antiterminator BglG YP_002295284.1 4154755 R 409438 CDS YP_002295285.1 209921201 7002395 complement(4155878..4156603) 1 NC_011415.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon; transcriptional regulator PhoU 4156603 7002395 ECSE_4010 Escherichia coli SE11 transcriptional regulator PhoU YP_002295285.1 4155878 R 409438 CDS YP_002295286.1 209921202 7002396 complement(4156618..4157391) 1 NC_011415.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 4157391 pstB 7002396 pstB Escherichia coli SE11 phosphate transporter ATP-binding protein YP_002295286.1 4156618 R 409438 CDS YP_002295287.1 209921203 7002397 complement(4157482..4158372) 1 NC_011415.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 4158372 pstA 7002397 pstA Escherichia coli SE11 phosphate transporter permease subunit PtsA YP_002295287.1 4157482 R 409438 CDS YP_002295288.1 209921204 7002398 complement(4158372..4159331) 1 NC_011415.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 4159331 pstC 7002398 pstC Escherichia coli SE11 phosphate transporter permease subunit PstC YP_002295288.1 4158372 R 409438 CDS YP_002295289.1 209921205 7002399 complement(4159418..4160458) 1 NC_011415.1 phosphate ABC transporter periplasmic substrate-binding protein PstS 4160458 7002399 ECSE_4014 Escherichia coli SE11 phosphate ABC transporter periplasmic substrate-binding protein PstS YP_002295289.1 4159418 R 409438 CDS YP_002295290.1 209921206 7002400 complement(4160706..4161779) 1 NC_011415.1 putative fimbrial protein LpfD 4161779 7002400 ECSE_4015 Escherichia coli SE11 putative fimbrial protein LpfD YP_002295290.1 4160706 R 409438 CDS YP_002295291.1 209921207 7002401 complement(4161790..4164312) 1 NC_011415.1 putative fimbrial usher protein LpfC 4164312 7002401 ECSE_4016 Escherichia coli SE11 putative fimbrial usher protein LpfC YP_002295291.1 4161790 R 409438 CDS YP_002295292.1 209921208 7002402 complement(4164337..4165068) 1 NC_011415.1 putative fimbrial chaperone LpfB 4165068 7002402 ECSE_4017 Escherichia coli SE11 putative fimbrial chaperone LpfB YP_002295292.1 4164337 R 409438 CDS YP_002295293.1 209921209 7002403 complement(4165116..4165688) 1 NC_011415.1 putative fimbrial protein LpfA 4165688 7002403 ECSE_4018 Escherichia coli SE11 putative fimbrial protein LpfA YP_002295293.1 4165116 R 409438 CDS YP_002295294.1 209921210 7002404 complement(4165990..4167819) 1 NC_011415.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 4167819 7002404 ECSE_4019 Escherichia coli SE11 glucosamine--fructose-6-phosphate aminotransferase YP_002295294.1 4165990 R 409438 CDS YP_002295295.1 209921211 7002405 complement(4167981..4169351) 1 NC_011415.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 4169351 glmU 7002405 glmU Escherichia coli SE11 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002295295.1 4167981 R 409438 CDS YP_002295296.1 209921212 7002406 complement(4169702..4170121) 1 NC_011415.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 4170121 atpC 7002406 atpC Escherichia coli SE11 F0F1 ATP synthase subunit epsilon YP_002295296.1 4169702 R 409438 CDS YP_002295297.1 209921213 7002407 complement(4170142..4171524) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 4171524 7002407 ECSE_4022 Escherichia coli SE11 F0F1 ATP synthase subunit beta YP_002295297.1 4170142 R 409438 CDS YP_002295298.1 209921214 7002408 complement(4171551..4172414) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 4172414 7002408 ECSE_4023 Escherichia coli SE11 F0F1 ATP synthase subunit gamma YP_002295298.1 4171551 R 409438 CDS YP_002295299.1 209921215 7002409 complement(4172465..4174006) 1 NC_011415.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 4174006 7002409 ECSE_4024 Escherichia coli SE11 F0F1 ATP synthase subunit alpha YP_002295299.1 4172465 R 409438 CDS YP_002295300.1 209921216 7002410 complement(4174019..4174552) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 4174552 7002410 ECSE_4025 Escherichia coli SE11 F0F1 ATP synthase subunit delta YP_002295300.1 4174019 R 409438 CDS YP_002295301.1 209921217 7002411 complement(4174567..4175037) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 4175037 7002411 ECSE_4026 Escherichia coli SE11 F0F1 ATP synthase subunit B YP_002295301.1 4174567 R 409438 CDS YP_002295302.1 209921218 7002412 complement(4175099..4175338) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 4175338 7002412 ECSE_4027 Escherichia coli SE11 F0F1 ATP synthase subunit C YP_002295302.1 4175099 R 409438 CDS YP_002295303.1 209921219 7002413 complement(4175385..4176200) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 4176200 7002413 ECSE_4028 Escherichia coli SE11 F0F1 ATP synthase subunit A YP_002295303.1 4175385 R 409438 CDS YP_002295304.1 209921220 7002414 complement(4176209..4176601) 1 NC_011415.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 4176601 7002414 ECSE_4029 Escherichia coli SE11 F0F1 ATP synthase subunit I YP_002295304.1 4176209 R 409438 CDS YP_002295305.1 209921221 7002415 complement(4177206..4177829) 1 NC_011415.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4177829 gidB 7002415 gidB Escherichia coli SE11 16S rRNA methyltransferase GidB YP_002295305.1 4177206 R 409438 CDS YP_002295306.1 209921222 7002416 complement(4177893..4179782) 1 NC_011415.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4179782 7002416 ECSE_4031 Escherichia coli SE11 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002295306.1 4177893 R 409438 CDS YP_002295307.1 209921223 7002417 complement(4180161..4180604) 1 NC_011415.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 4180604 7002417 ECSE_4032 Escherichia coli SE11 flavodoxin YP_002295307.1 4180161 R 409438 CDS YP_002295308.1 209921224 7002418 complement(4180694..4181152) 1 NC_011415.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 4181152 7002418 ECSE_4033 Escherichia coli SE11 DNA-binding transcriptional regulator AsnC YP_002295308.1 4180694 R 409438 CDS YP_002295309.1 209921225 7002419 4181304..4182296 1 NC_011415.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4182296 7002419 ECSE_4034 Escherichia coli SE11 asparagine synthetase AsnA YP_002295309.1 4181304 D 409438 CDS YP_002295310.1 209921226 7002420 complement(4182301..4183752) 1 NC_011415.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA; hypothetical protein 4183752 yieM 7002420 yieM Escherichia coli SE11 hypothetical protein YP_002295310.1 4182301 R 409438 CDS YP_002295311.1 209921227 7002421 complement(4183746..4185266) 1 NC_011415.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase; regulatory ATPase RavA 4185266 7002421 ECSE_4036 Escherichia coli SE11 regulatory ATPase RavA YP_002295311.1 4183746 R 409438 CDS YP_002295312.1 209921228 7002422 4185465..4187333 1 NC_011415.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 4187333 trkD 7002422 trkD Escherichia coli SE11 potassium transport protein Kup YP_002295312.1 4185465 D 409438 CDS YP_002295313.1 209921229 7002423 4187500..4187919 1 NC_011415.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 4187919 7002423 ECSE_4038 Escherichia coli SE11 D-ribose pyranase YP_002295313.1 4187500 D 409438 CDS YP_002295314.1 209921230 7002424 4187927..4189432 1 NC_011415.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 4189432 7002424 ECSE_4039 Escherichia coli SE11 D-ribose transporter ATP binding protein YP_002295314.1 4187927 D 409438 CDS YP_002295315.1 209921231 7002425 4189437..4190402 1 NC_011415.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 4190402 rbsC 7002425 rbsC Escherichia coli SE11 ribose ABC transporter permease YP_002295315.1 4189437 D 409438 CDS YP_002295316.1 209921232 7002426 4190427..4191317 1 NC_011415.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 4191317 7002426 ECSE_4041 Escherichia coli SE11 D-ribose transporter subunit RbsB YP_002295316.1 4190427 D 409438 CDS YP_002295317.1 209921233 7002427 4191443..4192372 1 NC_011415.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 4192372 7002427 ECSE_4042 Escherichia coli SE11 ribokinase YP_002295317.1 4191443 D 409438 CDS YP_002295318.1 209921234 7002428 4192376..4193368 1 NC_011415.1 DNA-binding transcriptional repressor of ribose metabolism; transcriptional repressor RbsR 4193368 7002428 ECSE_4043 Escherichia coli SE11 transcriptional repressor RbsR YP_002295318.1 4192376 D 409438 CDS YP_002295319.1 209921235 7002429 complement(4193334..4194761) 1 NC_011415.1 putative transport protein 4194761 7002429 ECSE_4044 Escherichia coli SE11 putative transport protein YP_002295319.1 4193334 R 409438 CDS YP_002295320.1 209921236 7002430 complement(4194784..4195476) 1 NC_011415.1 putative transcriptional regulator 4195476 7002430 ECSE_4045 Escherichia coli SE11 putative transcriptional regulator YP_002295320.1 4194784 R 409438 CDS YP_002295321.1 209921237 7003103 complement(4201278..4202117) 1 NC_011415.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon; transcriptional regulator HdfR 4202117 7003103 ECSE_4046 Escherichia coli SE11 transcriptional regulator HdfR YP_002295321.1 4201278 R 409438 CDS YP_002295322.1 209921238 7002432 4202236..4202574 1 NC_011415.1 hypothetical protein 4202574 7002432 ECSE_4047 Escherichia coli SE11 hypothetical protein YP_002295322.1 4202236 D 409438 CDS YP_002295323.1 209921239 7002433 complement(4202599..4204119) 1 NC_011415.1 among the AAA+ ATPases, the YifB protease family belongs to the Helix 2 insert clade; unknown function; putative ATP-dependent protease 4204119 7002433 ECSE_4048 Escherichia coli SE11 putative ATP-dependent protease YP_002295323.1 4202599 R 409438 CDS YP_002295324.1 209921240 7002434 complement(4204140..4204325) 1 NC_011415.1 hypothetical protein 4204325 7002434 ECSE_4049 Escherichia coli SE11 hypothetical protein YP_002295324.1 4204140 R 409438 CDS YP_002295325.1 209921241 7002435 4204472..4204570 1 NC_011415.1 ilvG operon leader peptide 4204570 7002435 ECSE_4050 Escherichia coli SE11 ilvG operon leader peptide YP_002295325.1 4204472 D 409438 CDS YP_002295326.1 209921242 7002436 4204710..4206356 1 NC_011415.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 4206356 7002436 ECSE_4051 Escherichia coli SE11 acetolactate synthase 2 catalytic subunit YP_002295326.1 4204710 D 409438 CDS YP_002295327.1 209921243 7002437 4206353..4206616 1 NC_011415.1 acetolactate synthase 2 regulatory subunit 4206616 ilvM 7002437 ilvM Escherichia coli SE11 acetolactate synthase 2 regulatory subunit YP_002295327.1 4206353 D 409438 CDS YP_002295328.1 209921244 7002438 4206636..4207565 1 NC_011415.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 4207565 7002438 ECSE_4053 Escherichia coli SE11 branched-chain amino acid aminotransferase YP_002295328.1 4206636 D 409438 CDS YP_002295329.1 209921245 7002439 4207630..4209480 1 NC_011415.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4209480 7002439 ECSE_4054 Escherichia coli SE11 dihydroxy-acid dehydratase YP_002295329.1 4207630 D 409438 CDS YP_002295330.1 209921246 7002440 4209483..4211027 1 NC_011415.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4211027 7002440 ECSE_4055 Escherichia coli SE11 threonine dehydratase YP_002295330.1 4209483 D 409438 CDS YP_002295331.1 209921247 7002441 complement(4211024..4211914) 1 NC_011415.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 4211914 7002441 ECSE_4056 Escherichia coli SE11 DNA-binding transcriptional regulator IlvY YP_002295331.1 4211024 R 409438 CDS YP_002295332.1 209921248 7002442 4212064..4213539 1 NC_011415.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 4213539 7002442 ECSE_4057 Escherichia coli SE11 ketol-acid reductoisomerase YP_002295332.1 4212064 D 409438 CDS YP_002295333.1 209921249 7002443 complement(4213626..4213907) 1 NC_011415.1 peptidyl-prolyl cis-trans isomerase 4213907 7002443 ECSE_4058 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase YP_002295333.1 4213626 R 409438 CDS YP_002295334.1 209921250 7002444 complement(4214106..4214555) 1 NC_011415.1 hypothetical protein 4214555 7002444 ECSE_4059 Escherichia coli SE11 hypothetical protein YP_002295334.1 4214106 R 409438 CDS YP_002295335.1 209921251 7002445 4214772..4216793 1 NC_011415.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; ATP-dependent DNA helicase Rep 4216793 7002445 ECSE_4060 Escherichia coli SE11 ATP-dependent DNA helicase Rep YP_002295335.1 4214772 D 409438 CDS YP_002295336.1 209921252 7002446 complement(4216840..4218324) 1 NC_011415.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation; guanosine pentaphosphate phosphohydrolase 4218324 7002446 ECSE_4061 Escherichia coli SE11 guanosine pentaphosphate phosphohydrolase YP_002295336.1 4216840 R 409438 CDS YP_002295337.1 209921253 7002447 complement(4218458..4219723) 1 NC_011415.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 4219723 7002447 ECSE_4062 Escherichia coli SE11 ATP-dependent RNA helicase RhlB YP_002295337.1 4218458 R 409438 CDS YP_002295338.1 209921254 7002448 4219854..4220183 1 NC_011415.1 thioredoxin 4220183 trxA 7002448 trxA Escherichia coli SE11 thioredoxin YP_002295338.1 4219854 D 409438 CDS YP_002295339.1 209921255 7002449 4220324..4220425 1 NC_011415.1 putative rho operon leader peptide 4220425 7002449 ECSE_4064 Escherichia coli SE11 putative rho operon leader peptide YP_002295339.1 4220324 D 409438 CDS YP_002295340.1 209921256 7002450 4220510..4221769 1 NC_011415.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 4221769 rho 7002450 rho Escherichia coli SE11 transcription termination factor Rho YP_002295340.1 4220510 D 409438 CDS YP_002295341.1 209921257 7002451 4221779..4221997 1 NC_011415.1 hypothetical protein 4221997 7002451 ECSE_4066 Escherichia coli SE11 hypothetical protein YP_002295341.1 4221779 D 409438 CDS YP_002295342.1 209921258 7002452 4222009..4223112 1 NC_011415.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase 4223112 7002452 ECSE_4067 Escherichia coli SE11 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase YP_002295342.1 4222009 D 409438 CDS YP_002295343.1 209921259 7002453 4223188..4224171 1 NC_011415.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein; lipopolysaccharide biosynthesis protein WzzE 4224171 7002453 ECSE_4068 Escherichia coli SE11 lipopolysaccharide biosynthesis protein WzzE YP_002295343.1 4223188 D 409438 CDS YP_002295344.1 209921260 7002454 4224227..4225357 1 NC_011415.1 UDP-N-acetyl glucosamine-2-epimerase 4225357 7002454 ECSE_4069 Escherichia coli SE11 UDP-N-acetyl glucosamine-2-epimerase YP_002295344.1 4224227 D 409438 CDS YP_002295345.1 209921261 7002455 4225354..4226616 1 NC_011415.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid; UDP-N-acetyl-D-mannosamine dehydrogenase 4226616 wecC 7002455 wecC Escherichia coli SE11 UDP-N-acetyl-D-mannosamine dehydrogenase YP_002295345.1 4225354 D 409438 CDS YP_002295346.1 209921262 7002456 4226616..4227683 1 NC_011415.1 dTDP-glucose 4,6-dehydratase 4227683 7002456 ECSE_4071 Escherichia coli SE11 dTDP-glucose 4,6-dehydratase YP_002295346.1 4226616 D 409438 CDS YP_002295347.1 209921263 7002457 4227702..4228583 1 NC_011415.1 glucose-1-phosphate thymidylyltransferase 4228583 7002457 ECSE_4072 Escherichia coli SE11 glucose-1-phosphate thymidylyltransferase YP_002295347.1 4227702 D 409438 CDS YP_002295348.1 209921264 7002458 4228690..4229235 1 NC_011415.1 TDP-fucosamine acetyltransferase 4229235 7002458 ECSE_4073 Escherichia coli SE11 TDP-fucosamine acetyltransferase YP_002295348.1 4228690 D 409438 CDS YP_002295349.1 209921265 7002459 4229240..4230370 1 NC_011415.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 4230370 7002459 ECSE_4074 Escherichia coli SE11 TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002295349.1 4229240 D 409438 CDS YP_002295350.1 209921266 7002460 4230372..4231622 1 NC_011415.1 lipopolysaccharide biosynthesis protein 4231622 7002460 ECSE_4075 Escherichia coli SE11 lipopolysaccharide biosynthesis protein YP_002295350.1 4230372 D 409438 CDS YP_002295351.1 209921267 7002461 4231619..4232698 1 NC_011415.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; 4-alpha-L-fucosyltransferase 4232698 7002461 ECSE_4076 Escherichia coli SE11 4-alpha-L-fucosyltransferase YP_002295351.1 4231619 D 409438 CDS YP_002295352.1 209921268 7002462 4232695..4234047 1 NC_011415.1 enterobacterial common antigen polymerase; putative common antigen polymerase 4234047 7002462 ECSE_4077 Escherichia coli SE11 putative common antigen polymerase YP_002295352.1 4232695 D 409438 CDS YP_002295353.1 209921269 7002463 4234050..4234790 1 NC_011415.1 putative UDP-N-acetyl-D-mannosaminuronic acid transferase 4234790 7002463 ECSE_4078 Escherichia coli SE11 putative UDP-N-acetyl-D-mannosaminuronic acid transferase YP_002295353.1 4234050 D 409438 CDS YP_002295354.1 209921270 7002464 4234981..4236366 1 NC_011415.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function; putative transport protein YifK 4236366 7002464 ECSE_4079 Escherichia coli SE11 putative transport protein YifK YP_002295354.1 4234981 D 409438 CDS YP_002295355.1 209921271 7003107 4237052..4238287 1 NC_011415.1 putative arylsulfatase regulator 4238287 7003107 ECSE_4080 Escherichia coli SE11 putative arylsulfatase regulator YP_002295355.1 4237052 D 409438 CDS YP_002295356.1 209921272 7002466 complement(4238371..4238532) 1 NC_011415.1 hypothetical protein 4238532 7002466 ECSE_4081 Escherichia coli SE11 hypothetical protein YP_002295356.1 4238371 R 409438 CDS YP_002295357.1 209921273 7002467 complement(4238675..4238812) 1 NC_011415.1 hypothetical protein 4238812 7002467 ECSE_4082 Escherichia coli SE11 hypothetical protein YP_002295357.1 4238675 R 409438 CDS YP_002295358.1 209921274 7002468 complement(4239211..4240407) 1 NC_011415.1 putative protoheme IX biogenesis protein 4240407 7002468 ECSE_4083 Escherichia coli SE11 putative protoheme IX biogenesis protein YP_002295358.1 4239211 R 409438 CDS YP_002295359.1 209921275 7002469 complement(4240410..4241657) 1 NC_011415.1 putative uroporphyrinogen III C-methyltransferase 4241657 7002469 ECSE_4084 Escherichia coli SE11 putative uroporphyrinogen III C-methyltransferase YP_002295359.1 4240410 R 409438 CDS YP_002295360.1 209921276 7002470 complement(4241679..4242419) 1 NC_011415.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 4242419 hemD 7002470 hemD Escherichia coli SE11 uroporphyrinogen-III synthase YP_002295360.1 4241679 R 409438 CDS YP_002295361.1 209921277 7002471 complement(4242416..4243357) 1 NC_011415.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 4243357 hemC 7002471 hemC Escherichia coli SE11 porphobilinogen deaminase YP_002295361.1 4242416 R 409438 CDS YP_002295362.1 209921278 7002472 4243744..4246290 1 NC_011415.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 4246290 cyaA 7002472 cyaA Escherichia coli SE11 adenylate cyclase YP_002295362.1 4243744 D 409438 CDS YP_002295363.1 209921279 7002473 complement(4246330..4246650) 1 NC_011415.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 4246650 cyaY 7002473 cyaY Escherichia coli SE11 frataxin-like protein YP_002295363.1 4246330 R 409438 CDS YP_002295364.1 209921280 7002474 complement(4246698..4248011) 1 NC_011415.1 hypothetical protein 4248011 7002474 ECSE_4089 Escherichia coli SE11 hypothetical protein YP_002295364.1 4246698 R 409438 CDS YP_002295365.1 209921281 7002475 complement(4248008..4249516) 1 NC_011415.1 hypothetical protein 4249516 7002475 ECSE_4090 Escherichia coli SE11 hypothetical protein YP_002295365.1 4248008 R 409438 CDS YP_002295366.1 209921282 7002476 complement(4249547..4250857) 1 NC_011415.1 hypothetical protein 4250857 7002476 ECSE_4091 Escherichia coli SE11 hypothetical protein YP_002295366.1 4249547 R 409438 CDS YP_002295367.1 209921283 7002477 complement(4250854..4252326) 1 NC_011415.1 hypothetical protein 4252326 7002477 ECSE_4092 Escherichia coli SE11 hypothetical protein YP_002295367.1 4250854 R 409438 CDS YP_002295368.1 209921284 7002478 complement(4252668..4253222) 1 NC_011415.1 hypothetical protein 4253222 7002478 ECSE_4093 Escherichia coli SE11 hypothetical protein YP_002295368.1 4252668 R 409438 CDS YP_002295369.1 209921285 7002479 complement(4253229..4253363) 1 NC_011415.1 hypothetical protein 4253363 7002479 ECSE_4094 Escherichia coli SE11 hypothetical protein YP_002295369.1 4253229 R 409438 CDS YP_002295370.1 209921286 7002480 4253572..4253775 1 NC_011415.1 hypothetical protein 4253775 7002480 ECSE_4095 Escherichia coli SE11 hypothetical protein YP_002295370.1 4253572 D 409438 CDS YP_002295371.1 209921287 7002481 4253809..4254636 1 NC_011415.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 4254636 dapF 7002481 dapF Escherichia coli SE11 diaminopimelate epimerase YP_002295371.1 4253809 D 409438 CDS YP_002295372.1 209921288 7002482 4254633..4255340 1 NC_011415.1 hypothetical protein 4255340 7002482 ECSE_4097 Escherichia coli SE11 hypothetical protein YP_002295372.1 4254633 D 409438 CDS YP_002295373.1 209921289 7002483 4255337..4256233 1 NC_011415.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 4256233 xerC 7002483 xerC Escherichia coli SE11 site-specific tyrosine recombinase XerC YP_002295373.1 4255337 D 409438 CDS YP_002295374.1 209921290 7002484 4256233..4256949 1 NC_011415.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function; flavin mononucleotide phosphatase 4256949 7002484 ECSE_4099 Escherichia coli SE11 flavin mononucleotide phosphatase YP_002295374.1 4256233 D 409438 CDS YP_002295375.1 209921291 7002485 4257033..4259195 1 NC_011415.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4259195 uvrD 7002485 uvrD Escherichia coli SE11 DNA-dependent helicase II YP_002295375.1 4257033 D 409438 CDS YP_002295376.1 209921292 7002486 complement(4259342..4260106) 1 NC_011415.1 hypothetical protein 4260106 7002486 ECSE_4101 Escherichia coli SE11 hypothetical protein YP_002295376.1 4259342 R 409438 CDS YP_002295377.1 209921293 7002487 4260476..4261426 1 NC_011415.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 4261426 7002487 ECSE_4102 Escherichia coli SE11 magnesium/nickel/cobalt transporter CorA YP_002295377.1 4260476 D 409438 CDS YP_002295378.1 209921294 7002488 complement(4261480..4261959) 1 NC_011415.1 hypothetical protein 4261959 7002488 ECSE_4103 Escherichia coli SE11 hypothetical protein YP_002295378.1 4261480 R 409438 CDS YP_002295379.1 209921295 7002489 complement(4261956..4262804) 1 NC_011415.1 hypothetical protein 4262804 7002489 ECSE_4104 Escherichia coli SE11 hypothetical protein YP_002295379.1 4261956 R 409438 CDS YP_002295380.1 209921296 7002490 complement(4263162..4263440) 1 NC_011415.1 hypothetical protein 4263440 7002490 ECSE_4105 Escherichia coli SE11 hypothetical protein YP_002295380.1 4263162 R 409438 CDS YP_002295381.1 209921297 7002491 4263763..4264062 1 NC_011415.1 hypothetical protein 4264062 7002491 ECSE_4106 Escherichia coli SE11 hypothetical protein YP_002295381.1 4263763 D 409438 CDS YP_002295382.1 209921298 7002492 complement(4264109..4264996) 1 NC_011415.1 hypothetical protein 4264996 7002492 ECSE_4107 Escherichia coli SE11 hypothetical protein YP_002295382.1 4264109 R 409438 CDS YP_002295383.1 209921299 7002493 complement(4265048..4265515) 1 NC_011415.1 hypothetical protein 4265515 7002493 ECSE_4108 Escherichia coli SE11 hypothetical protein YP_002295383.1 4265048 R 409438 CDS YP_002295384.1 209921300 7002494 4265680..4266549 1 NC_011415.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 4266549 7002494 ECSE_4109 Escherichia coli SE11 phospholipase A YP_002295384.1 4265680 D 409438 CDS YP_002295385.1 209921301 7002495 4266676..4268511 1 NC_011415.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; ATP-dependent DNA helicase RecQ 4268511 7002495 ECSE_4110 Escherichia coli SE11 ATP-dependent DNA helicase RecQ YP_002295385.1 4266676 D 409438 CDS YP_002295386.1 209921302 7002496 4268575..4269195 1 NC_011415.1 threonine efflux system 4269195 7002496 ECSE_4111 Escherichia coli SE11 threonine efflux system YP_002295386.1 4268575 D 409438 CDS YP_002295387.1 209921303 7002497 complement(4269257..4269877) 1 NC_011415.1 homoserine/homoserine lactone efflux protein 4269877 rhtB 7002497 rhtB Escherichia coli SE11 homoserine/homoserine lactone efflux protein YP_002295387.1 4269257 R 409438 CDS YP_002295388.1 209921304 7002498 4269988..4271010 1 NC_011415.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; lysophospholipase L2 4271010 7002498 ECSE_4113 Escherichia coli SE11 lysophospholipase L2 YP_002295388.1 4269988 D 409438 CDS YP_002295389.1 209921305 7002499 4271018..4271818 1 NC_011415.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium; putative sugar phosphatase 4271818 7002499 ECSE_4114 Escherichia coli SE11 putative sugar phosphatase YP_002295389.1 4271018 D 409438 CDS YP_002295390.1 209921306 7002500 4271894..4272793 1 NC_011415.1 putative transport protein 4272793 7002500 ECSE_4115 Escherichia coli SE11 putative transport protein YP_002295390.1 4271894 D 409438 CDS YP_002295391.1 209921307 7002501 complement(4272681..4273634) 1 NC_011415.1 transcriptional regulator 4273634 7002501 ECSE_4116 Escherichia coli SE11 transcriptional regulator YP_002295391.1 4272681 R 409438 CDS YP_002295392.1 209921308 7002502 4273752..4276013 1 NC_011415.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 4276013 7002502 ECSE_4117 Escherichia coli SE11 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_002295392.1 4273752 D 409438 CDS YP_002295393.1 209921309 7002503 complement(4276053..4276868) 1 NC_011415.1 putative hydrolase 4276868 7002503 ECSE_4118 Escherichia coli SE11 putative hydrolase YP_002295393.1 4276053 R 409438 CDS YP_002295394.1 209921310 7002504 4277130..4277891 1 NC_011415.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 4277891 7002504 ECSE_4119 Escherichia coli SE11 uridine phosphorylase YP_002295394.1 4277130 D 409438 CDS YP_002295395.1 209921311 7002505 4278031..4279458 1 NC_011415.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner; DNA recombination protein RmuC 4279458 7002505 ECSE_4120 Escherichia coli SE11 DNA recombination protein RmuC YP_002295395.1 4278031 D 409438 CDS YP_002295396.1 209921312 7002506 4279553..4280308 1 NC_011415.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 4280308 ubiE 7002506 ubiE Escherichia coli SE11 ubiquinone/menaquinone biosynthesis methyltransferase YP_002295396.1 4279553 D 409438 CDS YP_002295397.1 209921313 7002507 4280322..4280927 1 NC_011415.1 hypothetical protein 4280927 7002507 ECSE_4122 Escherichia coli SE11 hypothetical protein YP_002295397.1 4280322 D 409438 CDS YP_002295398.1 209921314 7002508 4280924..4282564 1 NC_011415.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 4282564 ubiB 7002508 ubiB Escherichia coli SE11 putative ubiquinone biosynthesis protein UbiB YP_002295398.1 4280924 D 409438 CDS YP_002295399.1 209921315 7002509 4282643..4282912 1 NC_011415.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 4282912 tatA 7002509 tatA Escherichia coli SE11 twin arginine translocase protein A YP_002295399.1 4282643 D 409438 CDS YP_002295400.1 209921316 7002510 4282916..4283431 1 NC_011415.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 4283431 7002510 ECSE_4125 Escherichia coli SE11 sec-independent translocase YP_002295400.1 4282916 D 409438 CDS YP_002295401.1 209921317 7002511 4283434..4284210 1 NC_011415.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane; twin-arginine protein translocation system subunit TatC 4284210 7002511 ECSE_4126 Escherichia coli SE11 twin-arginine protein translocation system subunit TatC YP_002295401.1 4283434 D 409438 CDS YP_002295402.1 209921318 7002512 4284252..4285034 1 NC_011415.1 magnesium dependent; not involved in the Sec-independent protein export system; DNase TatD 4285034 7002512 ECSE_4127 Escherichia coli SE11 DNase TatD YP_002295402.1 4284252 D 409438 CDS YP_002295403.1 209921319 7002513 complement(4285031..4285519) 1 NC_011415.1 transcriptional activator RfaH 4285519 rfaH 7002513 rfaH Escherichia coli SE11 transcriptional activator RfaH YP_002295403.1 4285031 R 409438 CDS YP_002295404.1 209921320 7002514 4285686..4287179 1 NC_011415.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol; 3-octaprenyl-4-hydroxybenzoate decarboxylase 4287179 7002514 ECSE_4129 Escherichia coli SE11 3-octaprenyl-4-hydroxybenzoate decarboxylase YP_002295404.1 4285686 D 409438 CDS YP_002295405.1 209921321 7002515 4287225..4287926 1 NC_011415.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 4287926 fre 7002515 fre Escherichia coli SE11 FMN reductase YP_002295405.1 4287225 D 409438 CDS YP_002295406.1 209921322 7002516 complement(4288118..4289281) 1 NC_011415.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 4289281 fadA 7002516 fadA Escherichia coli SE11 3-ketoacyl-CoA thiolase YP_002295406.1 4288118 R 409438 CDS YP_002295407.1 209921323 7002517 complement(4289291..4291480) 1 NC_011415.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 4291480 fadB 7002517 fadB Escherichia coli SE11 multifunctional fatty acid oxidation complex subunit alpha YP_002295407.1 4289291 R 409438 CDS YP_002295408.1 209921324 7002518 4291670..4293001 1 NC_011415.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters; proline dipeptidase 4293001 7002518 ECSE_4133 Escherichia coli SE11 proline dipeptidase YP_002295408.1 4291670 D 409438 CDS YP_002295409.1 209921325 7002519 4292998..4293615 1 NC_011415.1 hypothetical protein 4293615 7002519 ECSE_4134 Escherichia coli SE11 hypothetical protein YP_002295409.1 4292998 D 409438 CDS YP_002295410.1 209921326 7002520 4293654..4295105 1 NC_011415.1 potassium transporter 4295105 7002520 ECSE_4135 Escherichia coli SE11 potassium transporter YP_002295410.1 4293654 D 409438 CDS YP_002295411.1 209921327 7002521 4295117..4295662 1 NC_011415.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 4295662 hemG 7002521 hemG Escherichia coli SE11 protoporphyrinogen oxidase YP_002295411.1 4295117 D 409438 CDS YP_002295412.1 209921328 7003069 complement(4301242..4301754) 1 NC_011415.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; molybdopterin-guanine dinucleotide biosynthesis protein B 4301754 7003069 ECSE_4137 Escherichia coli SE11 molybdopterin-guanine dinucleotide biosynthesis protein B YP_002295412.1 4301242 R 409438 CDS YP_002295413.1 209921329 7002523 complement(4301751..4302335) 1 NC_011415.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4302335 mobA 7002523 mobA Escherichia coli SE11 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_002295413.1 4301751 R 409438 CDS YP_002295414.1 209921330 7002524 4302405..4302674 1 NC_011415.1 hypothetical protein 4302674 7002524 ECSE_4139 Escherichia coli SE11 hypothetical protein YP_002295414.1 4302405 D 409438 CDS YP_002295415.1 209921331 7002525 4302751..4303737 1 NC_011415.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4303737 7002525 ECSE_4140 Escherichia coli SE11 serine/threonine protein kinase YP_002295415.1 4302751 D 409438 CDS YP_002295416.1 209921332 7002526 4303754..4304380 1 NC_011415.1 periplasmic protein disulfide isomerase I 4304380 7002526 ECSE_4141 Escherichia coli SE11 periplasmic protein disulfide isomerase I YP_002295416.1 4303754 D 409438 CDS YP_002295417.1 209921333 7002527 4304493..4305965 1 NC_011415.1 hypothetical protein 4305965 7002527 ECSE_4142 Escherichia coli SE11 hypothetical protein YP_002295417.1 4304493 D 409438 CDS YP_002295418.1 209921334 7002528 complement(4306006..4306938) 1 NC_011415.1 putative acyltransferase 4306938 7002528 ECSE_4143 Escherichia coli SE11 putative acyltransferase YP_002295418.1 4306006 R 409438 CDS YP_002295419.1 209921335 7002529 complement(4307058..4307300) 1 NC_011415.1 hypothetical protein 4307300 7002529 ECSE_4144 Escherichia coli SE11 hypothetical protein YP_002295419.1 4307058 R 409438 CDS YP_002295420.1 209921336 7002530 4307302..4310088 1 NC_011415.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 4310088 7002530 ECSE_4145 Escherichia coli SE11 DNA polymerase I YP_002295420.1 4307302 D 409438 CDS YP_002295421.1 209921337 7002531 complement(4310307..4310456) 1 NC_011415.1 hypothetical protein 4310456 7002531 ECSE_4146 Escherichia coli SE11 hypothetical protein YP_002295421.1 4310307 R 409438 CDS YP_002295422.1 209921338 7002532 complement(4310470..4311066) 1 NC_011415.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 4311066 engB 7002532 engB Escherichia coli SE11 ribosome biogenesis GTP-binding protein YsxC YP_002295422.1 4310470 R 409438 CDS YP_002295423.1 209921339 7002533 complement(4311138..4311374) 1 NC_011415.1 hypothetical protein 4311374 7002533 ECSE_4148 Escherichia coli SE11 hypothetical protein YP_002295423.1 4311138 R 409438 CDS YP_002295424.1 209921340 7002534 4311684..4312193 1 NC_011415.1 hypothetical protein 4312193 7002534 ECSE_4149 Escherichia coli SE11 hypothetical protein YP_002295424.1 4311684 D 409438 CDS YP_002295425.1 209921341 7002535 4312382..4313755 1 NC_011415.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4313755 7002535 ECSE_4150 Escherichia coli SE11 coproporphyrinogen III oxidase YP_002295425.1 4312382 D 409438 CDS YP_002295426.1 209921342 7002536 complement(4314167..4315576) 1 NC_011415.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54; nitrogen regulation protein NR(I) 4315576 glnG 7002536 glnG Escherichia coli SE11 nitrogen regulation protein NR(I) YP_002295426.1 4314167 R 409438 CDS YP_002295427.1 209921343 7002537 complement(4315588..4316637) 1 NC_011415.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation; nitrogen regulation protein NR(II) 4316637 glnL 7002537 glnL Escherichia coli SE11 nitrogen regulation protein NR(II) YP_002295427.1 4315588 R 409438 CDS YP_002295428.1 209921344 7002538 complement(4316811..4318220) 1 NC_011415.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; glutamine synthetase 4318220 glnA 7002538 glnA Escherichia coli SE11 glutamine synthetase YP_002295428.1 4316811 R 409438 CDS YP_002295429.1 209921345 7002539 4318593..4320416 1 NC_011415.1 GTP-binding protein 4320416 7002539 ECSE_4154 Escherichia coli SE11 GTP-binding protein YP_002295429.1 4318593 D 409438 CDS YP_002295430.1 209921346 7002540 4320633..4321343 1 NC_011415.1 putative transcriptional regulator 4321343 7002540 ECSE_4155 Escherichia coli SE11 putative transcriptional regulator YP_002295430.1 4320633 D 409438 CDS YP_002295431.1 209921347 7002541 4321351..4322331 1 NC_011415.1 hypothetical protein 4322331 7002541 ECSE_4156 Escherichia coli SE11 hypothetical protein YP_002295431.1 4321351 D 409438 CDS YP_002295432.1 209921348 7002542 4322433..4323698 1 NC_011415.1 hypothetical protein 4323698 7002542 ECSE_4157 Escherichia coli SE11 hypothetical protein YP_002295432.1 4322433 D 409438 CDS YP_002295433.1 209921349 7002543 complement(4323789..4324481) 1 NC_011415.1 porin involved in the transport of small molecular weight solutes (up to 600 Daltons) across the cell wall; specific substrate still unknown; outer membrane porin L 4324481 ompL 7002543 ompL Escherichia coli SE11 outer membrane porin L YP_002295433.1 4323789 R 409438 CDS YP_002295434.1 209921350 7002544 complement(4324549..4325952) 1 NC_011415.1 putative transport protein 4325952 7002544 ECSE_4159 Escherichia coli SE11 putative transport protein YP_002295434.1 4324549 R 409438 CDS YP_002295435.1 209921351 7002545 complement(4325995..4327380) 1 NC_011415.1 putative transport protein 4327380 7002545 ECSE_4160 Escherichia coli SE11 putative transport protein YP_002295435.1 4325995 R 409438 CDS YP_002295436.1 209921352 7002546 complement(4327426..4329462) 1 NC_011415.1 alpha-glucosidase 4329462 7002546 ECSE_4161 Escherichia coli SE11 alpha-glucosidase YP_002295436.1 4327426 R 409438 CDS YP_002295437.1 209921353 7002547 complement(4329661..4330563) 1 NC_011415.1 putative aldose-1-epimerase 4330563 7002547 ECSE_4162 Escherichia coli SE11 putative aldose-1-epimerase YP_002295437.1 4329661 R 409438 CDS YP_002295438.1 209921354 7002548 complement(4330701..4331942) 1 NC_011415.1 hypothetical protein 4331942 7002548 ECSE_4163 Escherichia coli SE11 hypothetical protein YP_002295438.1 4330701 R 409438 CDS YP_002295439.1 209921355 7002549 complement(4331959..4332837) 1 NC_011415.1 putative aldolase 4332837 7002549 ECSE_4164 Escherichia coli SE11 putative aldolase YP_002295439.1 4331959 R 409438 CDS YP_002295440.1 209921356 7002550 complement(4332861..4333757) 1 NC_011415.1 putative dehydrogenase 4333757 7002550 ECSE_4165 Escherichia coli SE11 putative dehydrogenase YP_002295440.1 4332861 R 409438 CDS YP_002295441.1 209921357 7002551 4333925..4334821 1 NC_011415.1 putative kinase 4334821 7002551 ECSE_4166 Escherichia coli SE11 putative kinase YP_002295441.1 4333925 D 409438 CDS YP_002295442.1 209921358 7002552 4334855..4335640 1 NC_011415.1 putative transcriptional regulator 4335640 7002552 ECSE_4167 Escherichia coli SE11 putative transcriptional regulator YP_002295442.1 4334855 D 409438 CDS YP_002295443.1 209921359 7002553 4335739..4336338 1 NC_011415.1 phosphatase 4336338 7002553 ECSE_4168 Escherichia coli SE11 phosphatase YP_002295443.1 4335739 D 409438 CDS YP_002295444.1 209921360 7002554 4336332..4337204 1 NC_011415.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 4337204 rbn 7002554 rbn Escherichia coli SE11 ribonuclease BN YP_002295444.1 4336332 D 409438 CDS YP_002295445.1 209921361 7002555 4337201..4337638 1 NC_011415.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 4337638 7002555 ECSE_4170 Escherichia coli SE11 D-tyrosyl-tRNA(Tyr) deacylase YP_002295445.1 4337201 D 409438 CDS YP_002295446.1 209921362 7002556 4337683..4338624 1 NC_011415.1 putative acetyltransferase 4338624 7002556 ECSE_4171 Escherichia coli SE11 putative acetyltransferase YP_002295446.1 4337683 D 409438 CDS YP_002295447.1 209921363 7002557 complement(4338688..4339596) 1 NC_011415.1 putative lipase 4339596 7002557 ECSE_4172 Escherichia coli SE11 putative lipase YP_002295447.1 4338688 R 409438 CDS YP_002295448.1 209921364 7002558 4339825..4340136 1 NC_011415.1 hypothetical protein 4340136 7002558 ECSE_4173 Escherichia coli SE11 hypothetical protein YP_002295448.1 4339825 D 409438 CDS YP_002295449.1 209921365 7002559 4340137..4340427 1 NC_011415.1 hypothetical protein 4340427 7002559 ECSE_4174 Escherichia coli SE11 hypothetical protein YP_002295449.1 4340137 D 409438 CDS YP_002295450.1 209921366 7002560 4340986..4341231 1 NC_011415.1 hypothetical protein 4341231 7002560 ECSE_4175 Escherichia coli SE11 hypothetical protein YP_002295450.1 4340986 D 409438 CDS YP_002295451.1 209921367 7002561 4341450..4341692 1 NC_011415.1 hypothetical protein 4341692 7002561 ECSE_4176 Escherichia coli SE11 hypothetical protein YP_002295451.1 4341450 D 409438 CDS YP_002295452.1 209921368 7002562 complement(4342022..4342951) 1 NC_011415.1 required for the formation of active formate dehydrogenase; formate dehydrogenase accessory protein FdhE 4342951 7002562 ECSE_4177 Escherichia coli SE11 formate dehydrogenase accessory protein FdhE YP_002295452.1 4342022 R 409438 CDS YP_002295453.1 209921369 7002563 complement(4342948..4343583) 1 NC_011415.1 cytochrome b556(FDO) component; heme containing; formate dehydrogenase-O subunit gamma 4343583 7002563 ECSE_4178 Escherichia coli SE11 formate dehydrogenase-O subunit gamma YP_002295453.1 4342948 R 409438 CDS YP_002295454.1 209921370 7002564 complement(4343580..4344482) 1 NC_011415.1 formate dehydrogenase iron-sulfur subunit 4344482 7002564 ECSE_4179 Escherichia coli SE11 formate dehydrogenase iron-sulfur subunit YP_002295454.1 4343580 R 409438 CDS YP_002295455.1 209921371 7002565 complement(4344495..4346909) 1 NC_011415.1 truncated formate dehydrogenase major subunit 4346909 7002565 ECSE_4180 Escherichia coli SE11 truncated formate dehydrogenase major subunit YP_002295455.1 4344495 R 409438 CDS YP_002295456.1 209921372 7002566 complement(4346958..4347545) 1 NC_011415.1 truncated formate dehydrogenase major subunit 4347545 7002566 ECSE_4181 Escherichia coli SE11 truncated formate dehydrogenase major subunit YP_002295456.1 4346958 R 409438 CDS YP_002295457.1 209921373 7002567 4347739..4348572 1 NC_011415.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 4348572 7002567 ECSE_4182 Escherichia coli SE11 formate dehydrogenase accessory protein YP_002295457.1 4347739 D 409438 CDS YP_002295458.1 209921374 7002568 4348725..4349765 1 NC_011415.1 putative lipoprotein 4349765 7002568 ECSE_4183 Escherichia coli SE11 putative lipoprotein YP_002295458.1 4348725 D 409438 CDS YP_002295459.1 209921375 7002569 complement(4349815..4351563) 1 NC_011415.1 putative repressor of the frv operon, involved in phosphoenolpyruvate:sugar phosphotransferase system; putative frv operon regulatory protein 4351563 7002569 ECSE_4184 Escherichia coli SE11 putative frv operon regulatory protein YP_002295459.1 4349815 R 409438 CDS YP_002295460.1 209921376 7002570 complement(4351563..4352633) 1 NC_011415.1 with FrvABR is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system which may be involved in the transport and phosphorylation of sugars; putative fructose-specific phosphotransferase system protein FrvX 4352633 7002570 ECSE_4185 Escherichia coli SE11 putative fructose-specific phosphotransferase system protein FrvX YP_002295460.1 4351563 R 409438 CDS YP_002295461.1 209921377 7002571 complement(4352623..4354074) 1 NC_011415.1 putative PTS system transporter subunits IIBC 4354074 7002571 ECSE_4186 Escherichia coli SE11 putative PTS system transporter subunits IIBC YP_002295461.1 4352623 R 409438 CDS YP_002295462.1 209921378 7002572 complement(4354085..4354531) 1 NC_011415.1 with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars; possibly responsible for the sugar specificity of the system; putative fructose-like phosphotransferase system subunit EIIA 4354531 7002572 ECSE_4187 Escherichia coli SE11 putative fructose-like phosphotransferase system subunit EIIA YP_002295462.1 4354085 R 409438 CDS YP_002295463.1 209921379 7002573 complement(4354556..4354708) 1 NC_011415.1 hypothetical protein 4354708 7002573 ECSE_4188 Escherichia coli SE11 hypothetical protein YP_002295463.1 4354556 R 409438 CDS YP_002295464.1 209921380 7002574 complement(4354832..4355146) 1 NC_011415.1 hypothetical protein 4355146 7002574 ECSE_4189 Escherichia coli SE11 hypothetical protein YP_002295464.1 4354832 R 409438 CDS YP_002295465.1 209921381 7002575 complement(4355156..4355980) 1 NC_011415.1 rhamnulose-1-phosphate aldolase 4355980 7002575 ECSE_4190 Escherichia coli SE11 rhamnulose-1-phosphate aldolase YP_002295465.1 4355156 R 409438 CDS YP_002295466.1 209921382 7002576 complement(4356222..4357481) 1 NC_011415.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 4357481 7002576 ECSE_4191 Escherichia coli SE11 L-rhamnose isomerase YP_002295466.1 4356222 R 409438 CDS YP_002295467.1 209921383 7002577 complement(4357478..4358947) 1 NC_011415.1 catalyzes the ATP-dependent phosphorylation of rhamnulose; rhamnulokinase 4358947 rhaB 7002577 rhaB Escherichia coli SE11 rhamnulokinase YP_002295467.1 4357478 R 409438 CDS YP_002295468.1 209921384 7002578 4359026..4359175 1 NC_011415.1 hypothetical protein 4359175 7002578 ECSE_4193 Escherichia coli SE11 hypothetical protein YP_002295468.1 4359026 D 409438 CDS YP_002295469.1 209921385 7002579 4359235..4360071 1 NC_011415.1 activates the expression of the rhaBAD operon and rhaT gene; transcriptional activator RhaS 4360071 7002579 ECSE_4194 Escherichia coli SE11 transcriptional activator RhaS YP_002295469.1 4359235 D 409438 CDS YP_002295470.1 209921386 7002580 4360055..4360993 1 NC_011415.1 activates the expression of rhaRS in response to L-rhamnose; transcriptional activator RhaR 4360993 7002580 ECSE_4195 Escherichia coli SE11 transcriptional activator RhaR YP_002295470.1 4360055 D 409438 CDS YP_002295471.1 209921387 7002581 complement(4360990..4362024) 1 NC_011415.1 transports L-rhamnose and L-lyxose into the cell; rhamnose-proton symporter 4362024 7002581 ECSE_4196 Escherichia coli SE11 rhamnose-proton symporter YP_002295471.1 4360990 R 409438 CDS YP_002295472.1 209921388 7002582 4362309..4362929 1 NC_011415.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals; superoxide dismutase 4362929 7002582 ECSE_4197 Escherichia coli SE11 superoxide dismutase YP_002295472.1 4362309 D 409438 CDS YP_002295473.1 209921389 7002583 4363147..4364172 1 NC_011415.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 4364172 7002583 ECSE_4198 Escherichia coli SE11 2-keto-3-deoxygluconate permease YP_002295473.1 4363147 D 409438 CDS YP_002295474.1 209921390 7002584 4364321..4364995 1 NC_011415.1 hypothetical protein 4364995 7002584 ECSE_4199 Escherichia coli SE11 hypothetical protein YP_002295474.1 4364321 D 409438 CDS YP_002295475.1 209921391 7002585 complement(4365101..4366474) 1 NC_011415.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 4366474 cpxA 7002585 cpxA Escherichia coli SE11 two-component sensor protein YP_002295475.1 4365101 R 409438 CDS YP_002295476.1 209921392 7002586 complement(4366471..4367169) 1 NC_011415.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; DNA-binding transcriptional regulator CpxR 4367169 7002586 ECSE_4201 Escherichia coli SE11 DNA-binding transcriptional regulator CpxR YP_002295476.1 4366471 R 409438 CDS YP_002295477.1 209921393 7002587 4367319..4367819 1 NC_011415.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates; periplasmic repressor CpxP 4367819 cpxP 7002587 cpxP Escherichia coli SE11 periplasmic repressor CpxP YP_002295477.1 4367319 D 409438 CDS YP_002295478.1 209921394 7002588 4367968..4368870 1 NC_011415.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers; ferrous iron efflux protein F 4368870 fieF 7002588 fieF Escherichia coli SE11 ferrous iron efflux protein F YP_002295478.1 4367968 D 409438 CDS YP_002295479.1 209921395 7002589 4369051..4370013 1 NC_011415.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4370013 7002589 ECSE_4204 Escherichia coli SE11 6-phosphofructokinase YP_002295479.1 4369051 D 409438 CDS YP_002295480.1 209921396 7002590 complement(4370122..4370304) 1 NC_011415.1 hypothetical protein 4370304 7002590 ECSE_4205 Escherichia coli SE11 hypothetical protein YP_002295480.1 4370122 R 409438 CDS YP_002295481.1 209921397 7002591 4370332..4371321 1 NC_011415.1 sulfate transporter subunit 4371321 7002591 ECSE_4206 Escherichia coli SE11 sulfate transporter subunit YP_002295481.1 4370332 D 409438 CDS YP_002295482.1 209921398 7002592 4371428..4372183 1 NC_011415.1 CDP-diacylglycerol pyrophosphatase 4372183 7002592 ECSE_4207 Escherichia coli SE11 CDP-diacylglycerol pyrophosphatase YP_002295482.1 4371428 D 409438 CDS YP_002295483.1 209921399 7002593 complement(4372238..4373005) 1 NC_011415.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 4373005 tpiA 7002593 tpiA Escherichia coli SE11 triosephosphate isomerase YP_002295483.1 4372238 R 409438 CDS YP_002295484.1 209921400 7002594 complement(4373113..4373712) 1 NC_011415.1 hypothetical protein 4373712 7002594 ECSE_4209 Escherichia coli SE11 hypothetical protein YP_002295484.1 4373113 R 409438 CDS YP_002295485.1 209921401 7002595 4373813..4374253 1 NC_011415.1 hypothetical protein 4374253 7002595 ECSE_4210 Escherichia coli SE11 hypothetical protein YP_002295485.1 4373813 D 409438 CDS YP_002295486.1 209921402 7002596 4374465..4374764 1 NC_011415.1 hypothetical protein 4374764 7002596 ECSE_4211 Escherichia coli SE11 hypothetical protein YP_002295486.1 4374465 D 409438 CDS YP_002295487.1 209921403 7002597 4374791..4375219 1 NC_011415.1 with UspC and Usp E is involved in resistance to UV radiation; universal stress protein UspD 4375219 7002597 ECSE_4212 Escherichia coli SE11 universal stress protein UspD YP_002295487.1 4374791 D 409438 CDS YP_002295488.1 209921404 7002598 complement(4375224..4375970) 1 NC_011415.1 ferredoxin-NADP reductase 4375970 7002598 ECSE_4213 Escherichia coli SE11 ferredoxin-NADP reductase YP_002295488.1 4375224 R 409438 CDS YP_002295489.1 209921405 7002599 complement(4376067..4377077) 1 NC_011415.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 4377077 glpX 7002599 glpX Escherichia coli SE11 fructose 1,6-bisphosphatase II YP_002295489.1 4376067 R 409438 CDS YP_002295490.1 209921406 7002600 complement(4377213..4378742) 1 NC_011415.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 4378742 glpK 7002600 glpK Escherichia coli SE11 glycerol kinase YP_002295490.1 4377213 R 409438 CDS YP_002295491.1 209921407 7002601 complement(4378744..4379589) 1 NC_011415.1 glycerol uptake facilitator protein 4379589 7002601 ECSE_4216 Escherichia coli SE11 glycerol uptake facilitator protein YP_002295491.1 4378744 R 409438 CDS YP_002295492.1 209921408 7002602 4380020..4380259 1 NC_011415.1 hypothetical protein 4380259 7002602 ECSE_4217 Escherichia coli SE11 hypothetical protein YP_002295492.1 4380020 D 409438 CDS YP_002295493.1 209921409 7002603 complement(4380344..4380829) 1 NC_011415.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4380829 7002603 ECSE_4218 Escherichia coli SE11 ribonuclease activity regulator protein RraA YP_002295493.1 4380344 R 409438 CDS YP_002295494.1 209921410 7002604 complement(4380922..4381848) 1 NC_011415.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4381848 7002604 ECSE_4219 Escherichia coli SE11 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002295494.1 4380922 R 409438 CDS YP_002295495.1 209921411 7002605 complement(4381915..4383246) 1 NC_011415.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4383246 hslU 7002605 hslU Escherichia coli SE11 ATP-dependent protease ATP-binding subunit HslU YP_002295495.1 4381915 R 409438 CDS YP_002295496.1 209921412 7002606 complement(4383256..4383786) 1 NC_011415.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4383786 7002606 ECSE_4221 Escherichia coli SE11 ATP-dependent protease peptidase subunit YP_002295496.1 4383256 R 409438 CDS YP_002295497.1 209921413 7002607 complement(4383879..4384838) 1 NC_011415.1 essential cell division protein FtsN 4384838 7002607 ECSE_4222 Escherichia coli SE11 essential cell division protein FtsN YP_002295497.1 4383879 R 409438 CDS YP_002295498.1 209921414 7002608 complement(4384930..4385955) 1 NC_011415.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins; DNA-binding transcriptional regulator CytR 4385955 7002608 ECSE_4223 Escherichia coli SE11 DNA-binding transcriptional regulator CytR YP_002295498.1 4384930 R 409438 CDS YP_002295499.1 209921415 7002609 complement(4386111..4388309) 1 NC_011415.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 4388309 7002609 ECSE_4224 Escherichia coli SE11 primosome assembly protein PriA YP_002295499.1 4386111 R 409438 CDS YP_002295500.1 209921416 7002610 4388512..4388724 1 NC_011415.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 4388724 rpmE 7002610 rpmE Escherichia coli SE11 50S ribosomal protein L31 YP_002295500.1 4388512 D 409438 CDS YP_002295501.1 209921417 7002611 4388884..4393008 1 NC_011415.1 Rhs core protein 4393008 7002611 ECSE_4226 Escherichia coli SE11 Rhs core protein YP_002295501.1 4388884 D 409438 CDS YP_002295502.1 209921418 7002612 complement(4393303..4393617) 1 NC_011415.1 putative transposase 4393617 7002612 ECSE_4227 Escherichia coli SE11 putative transposase YP_002295502.1 4393303 R 409438 CDS YP_002295503.1 209921419 7002613 complement(4393611..4393796) 1 NC_011415.1 putative transposase 4393796 7002613 ECSE_4228 Escherichia coli SE11 putative transposase YP_002295503.1 4393611 R 409438 CDS YP_002295504.1 209921420 7002614 complement(4393823..4394095) 1 NC_011415.1 transposase 4394095 7002614 ECSE_4229 Escherichia coli SE11 transposase YP_002295504.1 4393823 R 409438 CDS YP_002295505.1 209921421 7002615 4394139..4394348 1 NC_011415.1 hypothetical protein 4394348 7002615 ECSE_4230 Escherichia coli SE11 hypothetical protein YP_002295505.1 4394139 D 409438 CDS YP_002295506.1 209921422 7002616 complement(4394366..4394848) 1 NC_011415.1 member of the NlpC/P60 superfamily of peptidases; putative peptidoglycan peptidase 4394848 7002616 ECSE_4231 Escherichia coli SE11 putative peptidoglycan peptidase YP_002295506.1 4394366 R 409438 CDS YP_002295507.1 209921423 7002617 complement(4394908..4395225) 1 NC_011415.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 4395225 7002617 ECSE_4232 Escherichia coli SE11 transcriptional repressor protein MetJ YP_002295507.1 4394908 R 409438 CDS YP_002295508.1 209921424 7002618 4395502..4396662 1 NC_011415.1 cystathionine gamma-synthase 4396662 7002618 ECSE_4233 Escherichia coli SE11 cystathionine gamma-synthase YP_002295508.1 4395502 D 409438 CDS YP_002295509.1 209921425 7002619 4396665..4399097 1 NC_011415.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartate kinase II/homoserine dehydrogenase II 4399097 metL 7002619 metL Escherichia coli SE11 bifunctional aspartate kinase II/homoserine dehydrogenase II YP_002295509.1 4396665 D 409438 CDS YP_002295510.1 209921426 7002620 4399446..4400336 1 NC_011415.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 4400336 metF 7002620 metF Escherichia coli SE11 5,10-methylenetetrahydrofolate reductase YP_002295510.1 4399446 D 409438 CDS YP_002295511.1 209921427 7002621 4400665..4402845 1 NC_011415.1 catalase 4402845 7002621 ECSE_4236 Escherichia coli SE11 catalase YP_002295511.1 4400665 D 409438 CDS YP_002295512.1 209921428 7002622 4402906..4403844 1 NC_011415.1 hypothetical protein 4403844 7002622 ECSE_4237 Escherichia coli SE11 hypothetical protein YP_002295512.1 4402906 D 409438 CDS YP_002295513.1 209921429 7002623 complement(4403871..4404488) 1 NC_011415.1 hypothetical protein 4404488 7002623 ECSE_4238 Escherichia coli SE11 hypothetical protein YP_002295513.1 4403871 R 409438 CDS YP_002295514.1 209921430 7002624 complement(4404763..4405866) 1 NC_011415.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 4405866 gldA 7002624 gldA Escherichia coli SE11 glycerol dehydrogenase YP_002295514.1 4404763 R 409438 CDS YP_002295515.1 209921431 7002625 complement(4405877..4406539) 1 NC_011415.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 4406539 7002625 ECSE_4240 Escherichia coli SE11 fructose-6-phosphate aldolase YP_002295515.1 4405877 R 409438 CDS YP_002295516.1 209921432 7002626 complement(4406551..4409052) 1 NC_011415.1 PTS system enzyme I 4409052 7002626 ECSE_4241 Escherichia coli SE11 PTS system enzyme I YP_002295516.1 4406551 R 409438 CDS YP_002295517.1 209921433 7002627 4409361..4410440 1 NC_011415.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site; putative fructose-like permease EIIC subunit 2 4410440 7002627 ECSE_4242 Escherichia coli SE11 putative fructose-like permease EIIC subunit 2 YP_002295517.1 4409361 D 409438 CDS YP_002295518.1 209921434 7002628 4410455..4410775 1 NC_011415.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS; putative PTS system fructose-like transporter subunit EIIB 4410775 7002628 ECSE_4243 Escherichia coli SE11 putative PTS system fructose-like transporter subunit EIIB YP_002295518.1 4410455 D 409438 CDS YP_002295519.1 209921435 7002629 4410826..4413123 1 NC_011415.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein; putative formate acetyltransferase 2 4413123 pflD 7002629 pflD Escherichia coli SE11 putative formate acetyltransferase 2 YP_002295519.1 4410826 D 409438 CDS YP_002295520.1 209921436 7002630 4413089..4413967 1 NC_011415.1 pyruvate formate lyase II activase 4413967 7002630 ECSE_4245 Escherichia coli SE11 pyruvate formate lyase II activase YP_002295520.1 4413089 D 409438 CDS YP_002295521.1 209921437 7002631 4413969..4414310 1 NC_011415.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog; putative fructose-like phosphotransferase EIIB subunit 3 4414310 7002631 ECSE_4246 Escherichia coli SE11 putative fructose-like phosphotransferase EIIB subunit 3 YP_002295521.1 4413969 D 409438 CDS YP_002295522.1 209921438 7002632 complement(4414297..4415148) 1 NC_011415.1 putative transcriptional regulator 4415148 7002632 ECSE_4247 Escherichia coli SE11 putative transcriptional regulator YP_002295522.1 4414297 R 409438 CDS YP_002295523.1 209921439 7002633 complement(4415297..4417030) 1 NC_011415.1 hypothetical protein 4417030 7002633 ECSE_4248 Escherichia coli SE11 hypothetical protein YP_002295523.1 4415297 R 409438 CDS YP_002295524.1 209921440 7002634 complement(4417212..4419863) 1 NC_011415.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 4419863 7002634 ECSE_4249 Escherichia coli SE11 phosphoenolpyruvate carboxylase YP_002295524.1 4417212 R 409438 CDS YP_002295525.1 209921441 7002635 complement(4420215..4421366) 1 NC_011415.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 4421366 7002635 ECSE_4250 Escherichia coli SE11 acetylornithine deacetylase YP_002295525.1 4420215 R 409438 CDS YP_002295526.1 209921442 7002636 4421520..4422524 1 NC_011415.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4422524 argC 7002636 argC Escherichia coli SE11 N-acetyl-gamma-glutamyl-phosphate reductase YP_002295526.1 4421520 D 409438 CDS YP_002295527.1 209921443 7002637 4422535..4423308 1 NC_011415.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4423308 7002637 ECSE_4252 Escherichia coli SE11 acetylglutamate kinase YP_002295527.1 4422535 D 409438 CDS YP_002295528.1 209921444 7002638 4423369..4424742 1 NC_011415.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 4424742 7002638 ECSE_4253 Escherichia coli SE11 argininosuccinate lyase YP_002295528.1 4423369 D 409438 CDS YP_002295529.1 209921445 7002639 4425240..4426454 1 NC_011415.1 starvation sensing protein 4426454 7002639 ECSE_4254 Escherichia coli SE11 starvation sensing protein YP_002295529.1 4425240 D 409438 CDS YP_002295530.1 209921446 7002640 4426521..4427804 1 NC_011415.1 putative transport protein 4427804 7002640 ECSE_4255 Escherichia coli SE11 putative transport protein YP_002295530.1 4426521 D 409438 CDS YP_002295531.1 209921447 7002641 4428055..4428972 1 NC_011415.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 4428972 7002641 ECSE_4256 Escherichia coli SE11 DNA-binding transcriptional regulator OxyR YP_002295531.1 4428055 D 409438 CDS YP_002295532.1 209921448 7002642 complement(4428955..4430355) 1 NC_011415.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 4430355 7002642 ECSE_4257 Escherichia coli SE11 soluble pyridine nucleotide transhydrogenase YP_002295532.1 4428955 R 409438 CDS YP_002295533.1 209921449 7002643 4430632..4431336 1 NC_011415.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 4431336 7002643 ECSE_4258 Escherichia coli SE11 DNA-binding transcriptional repressor FabR YP_002295533.1 4430632 D 409438 CDS YP_002295534.1 209921450 7002644 4431336..4431695 1 NC_011415.1 hypothetical protein 4431695 7002644 ECSE_4259 Escherichia coli SE11 hypothetical protein YP_002295534.1 4431336 D 409438 CDS YP_002295535.1 209921451 7002645 complement(4431735..4432835) 1 NC_011415.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 4432835 7002645 ECSE_4260 Escherichia coli SE11 tRNA (uracil-5-)-methyltransferase YP_002295535.1 4431735 R 409438 CDS YP_002295536.1 209921452 7002646 4433204..4435048 1 NC_011415.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space; vitamin B12/cobalamin outer membrane transporter 4435048 btuB 7002646 btuB Escherichia coli SE11 vitamin B12/cobalamin outer membrane transporter YP_002295536.1 4433204 D 409438 CDS YP_002295537.1 209921453 7002647 4434993..4435850 1 NC_011415.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 4435850 7002647 ECSE_4262 Escherichia coli SE11 glutamate racemase YP_002295537.1 4434993 D 409438 CDS YP_002295538.1 209921454 7003070 4441628..4442656 1 NC_011415.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4442656 murB 7003070 murB Escherichia coli SE11 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002295538.1 4441628 D 409438 CDS YP_002295539.1 209921455 7002649 4442653..4443618 1 NC_011415.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4443618 7002649 ECSE_4264 Escherichia coli SE11 biotin--protein ligase YP_002295539.1 4442653 D 409438 CDS YP_002295540.1 209921456 7002650 complement(4443647..4444573) 1 NC_011415.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 4444573 7002650 ECSE_4265 Escherichia coli SE11 pantothenate kinase YP_002295540.1 4443647 R 409438 CDS YP_002295541.1 209921457 7002651 complement(4444654..4444815) 1 NC_011415.1 hypothetical protein 4444815 7002651 ECSE_4266 Escherichia coli SE11 hypothetical protein YP_002295541.1 4444654 R 409438 CDS YP_002295542.1 209921458 7003115 4445515..4446699 1 NC_011415.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4446699 7003115 ECSE_4267 Escherichia coli SE11 elongation factor Tu YP_002295542.1 4445515 D 409438 CDS YP_002295543.1 209921459 7002653 4446929..4447312 1 NC_011415.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4447312 secE 7002653 secE Escherichia coli SE11 preprotein translocase subunit SecE YP_002295543.1 4446929 D 409438 CDS YP_002295544.1 209921460 7002654 4447314..4447859 1 NC_011415.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4447859 nusG 7002654 nusG Escherichia coli SE11 transcription antitermination protein NusG YP_002295544.1 4447314 D 409438 CDS YP_002295545.1 209921461 7002655 4448018..4448446 1 NC_011415.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4448446 rplK 7002655 rplK Escherichia coli SE11 50S ribosomal protein L11 YP_002295545.1 4448018 D 409438 CDS YP_002295546.1 209921462 7002656 4448450..4449154 1 NC_011415.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4449154 rplA 7002656 rplA Escherichia coli SE11 50S ribosomal protein L1 YP_002295546.1 4448450 D 409438 CDS YP_002295547.1 209921463 7002657 4449567..4450064 1 NC_011415.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4450064 rplJ 7002657 rplJ Escherichia coli SE11 50S ribosomal protein L10 YP_002295547.1 4449567 D 409438 CDS YP_002295548.1 209921464 7002658 4450131..4450496 1 NC_011415.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4450496 rplL 7002658 rplL Escherichia coli SE11 50S ribosomal protein L7/L12 YP_002295548.1 4450131 D 409438 CDS YP_002295549.1 209921465 7002659 4450816..4454844 1 NC_011415.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4454844 rpoB 7002659 rpoB Escherichia coli SE11 DNA-directed RNA polymerase subunit beta YP_002295549.1 4450816 D 409438 CDS YP_002295550.1 209921466 7002660 4454921..4459144 1 NC_011415.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4459144 7002660 ECSE_4275 Escherichia coli SE11 DNA-directed RNA polymerase subunit beta' YP_002295550.1 4454921 D 409438 CDS YP_002295551.1 209921467 7002661 4459357..4459896 1 NC_011415.1 heat shock protein 4459896 7002661 ECSE_4276 Escherichia coli SE11 heat shock protein YP_002295551.1 4459357 D 409438 CDS YP_002295552.1 209921468 7002662 complement(4460306..4461439) 1 NC_011415.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 4461439 thiH 7002662 thiH Escherichia coli SE11 thiamine biosynthesis protein ThiH YP_002295552.1 4460306 R 409438 CDS YP_002295553.1 209921469 7002663 complement(4461436..4462206) 1 NC_011415.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4462206 thiG 7002663 thiG Escherichia coli SE11 thiazole synthase YP_002295553.1 4461436 R 409438 CDS YP_002295554.1 209921470 7002664 complement(4462208..4462408) 1 NC_011415.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 4462408 7002664 ECSE_4279 Escherichia coli SE11 sulfur carrier protein ThiS YP_002295554.1 4462208 R 409438 CDS YP_002295555.1 209921471 7002665 complement(4462392..4463147) 1 NC_011415.1 thiamine biosynthesis adenylyltransferase ThiF 4463147 7002665 ECSE_4280 Escherichia coli SE11 thiamine biosynthesis adenylyltransferase ThiF YP_002295555.1 4462392 R 409438 CDS YP_002295556.1 209921472 7002666 complement(4463140..4463775) 1 NC_011415.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 4463775 7002666 ECSE_4281 Escherichia coli SE11 thiamine-phosphate pyrophosphorylase YP_002295556.1 4463140 R 409438 CDS YP_002295557.1 209921473 7002667 complement(4463775..4465670) 1 NC_011415.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4465670 7002667 ECSE_4282 Escherichia coli SE11 thiamine biosynthesis protein ThiC YP_002295557.1 4463775 R 409438 CDS YP_002295558.1 209921474 7002668 complement(4465903..4466379) 1 NC_011415.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 4466379 7002668 ECSE_4283 Escherichia coli SE11 anti-RNA polymerase sigma 70 factor YP_002295558.1 4465903 R 409438 CDS YP_002295559.1 209921475 7002669 4466474..4467247 1 NC_011415.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 4467247 nudC 7002669 nudC Escherichia coli SE11 NADH pyrophosphatase YP_002295559.1 4466474 D 409438 CDS YP_002295560.1 209921476 7002670 4467287..4468351 1 NC_011415.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4468351 hemE 7002670 hemE Escherichia coli SE11 uroporphyrinogen decarboxylase YP_002295560.1 4467287 D 409438 CDS YP_002295561.1 209921477 7002671 4468361..4469032 1 NC_011415.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures; endonuclease V 4469032 7002671 ECSE_4286 Escherichia coli SE11 endonuclease V YP_002295561.1 4468361 D 409438 CDS YP_002295562.1 209921478 7002672 4469075..4469665 1 NC_011415.1 hypothetical protein 4469665 7002672 ECSE_4287 Escherichia coli SE11 hypothetical protein YP_002295562.1 4469075 D 409438 CDS YP_002295563.1 209921479 7002673 4469852..4470124 1 NC_011415.1 histone-like DNA-binding protein; transcriptional regulator HU subunit alpha 4470124 7002673 ECSE_4288 Escherichia coli SE11 transcriptional regulator HU subunit alpha YP_002295563.1 4469852 D 409438 CDS YP_002295564.1 209921480 7002674 4470137..4470832 1 NC_011415.1 hypothetical protein 4470832 7002674 ECSE_4289 Escherichia coli SE11 hypothetical protein YP_002295564.1 4470137 D 409438 CDS YP_002295565.1 209921481 7002675 complement(4470834..4471259) 1 NC_011415.1 zinc resistance protein 4471259 zraP 7002675 zraP Escherichia coli SE11 zinc resistance protein YP_002295565.1 4470834 R 409438 CDS YP_002295566.1 209921482 7002676 complement(4471262..4471390) 1 NC_011415.1 hypothetical protein 4471390 7002676 ECSE_4291 Escherichia coli SE11 hypothetical protein YP_002295566.1 4471262 R 409438 CDS YP_002295567.1 209921483 7002677 4471497..4472873 1 NC_011415.1 sensor protein ZraS 4472873 7002677 ECSE_4292 Escherichia coli SE11 sensor protein ZraS YP_002295567.1 4471497 D 409438 CDS YP_002295568.1 209921484 7002678 4472870..4474195 1 NC_011415.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein; transcriptional regulatory protein ZraR 4474195 7002678 ECSE_4293 Escherichia coli SE11 transcriptional regulatory protein ZraR YP_002295568.1 4472870 D 409438 CDS YP_002295569.1 209921485 7002679 complement(4474192..4475481) 1 NC_011415.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 4475481 7002679 ECSE_4294 Escherichia coli SE11 phosphoribosylamine--glycine ligase YP_002295569.1 4474192 R 409438 CDS YP_002295570.1 209921486 7002680 complement(4475493..4477082) 1 NC_011415.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4477082 purH 7002680 purH Escherichia coli SE11 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002295570.1 4475493 R 409438 CDS YP_002295571.1 209921487 7002681 4477200..4477322 1 NC_011415.1 hypothetical protein 4477322 7002681 ECSE_4296 Escherichia coli SE11 hypothetical protein YP_002295571.1 4477200 D 409438 CDS YP_002295572.1 209921488 7003071 complement(4483079..4483522) 1 NC_011415.1 hypothetical protein 4483522 7003071 ECSE_4297 Escherichia coli SE11 hypothetical protein YP_002295572.1 4483079 R 409438 CDS YP_002295573.1 209921489 7002683 4483679..4484608 1 NC_011415.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 4484608 7002683 ECSE_4298 Escherichia coli SE11 homoserine O-succinyltransferase YP_002295573.1 4483679 D 409438 CDS YP_002295574.1 209921490 7002684 4484877..4486478 1 NC_011415.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 4486478 7002684 ECSE_4299 Escherichia coli SE11 malate synthase YP_002295574.1 4484877 D 409438 CDS YP_002295575.1 209921491 7002685 4486508..4487812 1 NC_011415.1 isocitrate lyase 4487812 7002685 ECSE_4300 Escherichia coli SE11 isocitrate lyase YP_002295575.1 4486508 D 409438 CDS YP_002295576.1 209921492 7002686 4487996..4489732 1 NC_011415.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4489732 aceK 7002686 aceK Escherichia coli SE11 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_002295576.1 4487996 D 409438 CDS YP_002295577.1 209921493 7002687 complement(4490054..4491274) 1 NC_011415.1 putative acetyl-CoA synthase regulator 4491274 7002687 ECSE_4302 Escherichia coli SE11 putative acetyl-CoA synthase regulator YP_002295577.1 4490054 R 409438 CDS YP_002295578.1 209921494 7002688 complement(4491591..4492415) 1 NC_011415.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase; transcriptional repressor IclR 4492415 7002688 ECSE_4303 Escherichia coli SE11 transcriptional repressor IclR YP_002295578.1 4491591 R 409438 CDS YP_002295579.1 209921495 7002689 4492615..4496298 1 NC_011415.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 4496298 metH 7002689 metH Escherichia coli SE11 B12-dependent methionine synthase YP_002295579.1 4492615 D 409438 CDS YP_002295580.1 209921496 7002690 4496518..4498149 1 NC_011415.1 hypothetical protein 4498149 7002690 ECSE_4305 Escherichia coli SE11 hypothetical protein YP_002295580.1 4496518 D 409438 CDS YP_002295581.1 209921497 7002691 complement(4498240..4498929) 1 NC_011415.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 4498929 7002691 ECSE_4306 Escherichia coli SE11 peptidase E YP_002295581.1 4498240 R 409438 CDS YP_002295582.1 209921498 7002692 4499141..4500013 1 NC_011415.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA; 23S rRNA pseudouridine synthase F 4500013 7002692 ECSE_4307 Escherichia coli SE11 23S rRNA pseudouridine synthase F YP_002295582.1 4499141 D 409438 CDS YP_002295583.1 209921499 7002693 complement(4500014..4500286) 1 NC_011415.1 hypothetical protein 4500286 7002693 ECSE_4308 Escherichia coli SE11 hypothetical protein YP_002295583.1 4500014 R 409438 CDS YP_002295584.1 209921500 7002694 complement(4500472..4500624) 1 NC_011415.1 hypothetical protein 4500624 7002694 ECSE_4309 Escherichia coli SE11 hypothetical protein YP_002295584.1 4500472 R 409438 CDS YP_002295585.1 209921501 7002695 4500816..4501943 1 NC_011415.1 hypothetical protein 4501943 7002695 ECSE_4310 Escherichia coli SE11 hypothetical protein YP_002295585.1 4500816 D 409438 CDS YP_002295586.1 209921502 7002696 4502027..4502740 1 NC_011415.1 hypothetical protein 4502740 7002696 ECSE_4311 Escherichia coli SE11 hypothetical protein YP_002295586.1 4502027 D 409438 CDS YP_002295587.1 209921503 7002697 complement(4502776..4503708) 1 NC_011415.1 hypothetical protein 4503708 7002697 ECSE_4312 Escherichia coli SE11 hypothetical protein YP_002295587.1 4502776 R 409438 CDS YP_002295588.1 209921504 7002698 complement(4503847..4505196) 1 NC_011415.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 4505196 7002698 ECSE_4313 Escherichia coli SE11 aspartate kinase III YP_002295588.1 4503847 R 409438 CDS YP_002295589.1 209921505 7002699 4505721..4507370 1 NC_011415.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 4507370 pgi 7002699 pgi Escherichia coli SE11 glucose-6-phosphate isomerase YP_002295589.1 4505721 D 409438 CDS YP_002295590.1 209921506 7002700 4507725..4507967 1 NC_011415.1 hypothetical protein 4507967 7002700 ECSE_4315 Escherichia coli SE11 hypothetical protein YP_002295590.1 4507725 D 409438 CDS YP_002295591.1 209921507 7002701 4508051..4508719 1 NC_011415.1 hypothetical protein 4508719 7002701 ECSE_4316 Escherichia coli SE11 hypothetical protein YP_002295591.1 4508051 D 409438 CDS YP_002295592.1 209921508 7002702 4508716..4509453 1 NC_011415.1 hypothetical protein 4509453 7002702 ECSE_4317 Escherichia coli SE11 hypothetical protein YP_002295592.1 4508716 D 409438 CDS YP_002295593.1 209921509 7002703 4509453..4511549 1 NC_011415.1 hypothetical protein 4511549 7002703 ECSE_4318 Escherichia coli SE11 hypothetical protein YP_002295593.1 4509453 D 409438 CDS YP_002295594.1 209921510 7002704 4511553..4511714 1 NC_011415.1 hypothetical protein 4511714 7002704 ECSE_4319 Escherichia coli SE11 hypothetical protein YP_002295594.1 4511553 D 409438 CDS YP_002295595.1 209921511 7002705 4511875..4512018 1 NC_011415.1 hypothetical protein 4512018 7002705 ECSE_4320 Escherichia coli SE11 hypothetical protein YP_002295595.1 4511875 D 409438 CDS YP_002295596.1 209921512 7002706 4512144..4512554 1 NC_011415.1 phosphate-starvation-inducible protein PsiE 4512554 7002706 ECSE_4321 Escherichia coli SE11 phosphate-starvation-inducible protein PsiE YP_002295596.1 4512144 D 409438 CDS YP_002295597.1 209921513 7002707 complement(4512598..4514073) 1 NC_011415.1 xylose/proton symporter; member of the major facilitator superfamily (MFS) of transporter; D-xylose transporter XylE 4514073 xylE 7002707 xylE Escherichia coli SE11 D-xylose transporter XylE YP_002295597.1 4512598 R 409438 CDS YP_002295598.1 209921514 7002708 complement(4514445..4515335) 1 NC_011415.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 4515335 malG 7002708 malG Escherichia coli SE11 maltose transporter permease YP_002295598.1 4514445 R 409438 CDS YP_002295599.1 209921515 7002709 complement(4515350..4516894) 1 NC_011415.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 4516894 malF 7002709 malF Escherichia coli SE11 maltose transporter membrane protein YP_002295599.1 4515350 R 409438 CDS YP_002295600.1 209921516 7002710 complement(4517048..4518238) 1 NC_011415.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 4518238 malE 7002710 malE Escherichia coli SE11 maltose ABC transporter periplasmic protein YP_002295600.1 4517048 R 409438 CDS YP_002295601.1 209921517 7002711 4518603..4519718 1 NC_011415.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 4519718 7002711 ECSE_4326 Escherichia coli SE11 maltose/maltodextrin transporter ATP-binding protein YP_002295601.1 4518603 D 409438 CDS YP_002295602.1 209921518 7002712 4519790..4521130 1 NC_011415.1 porin involved in the transport of maltose and maltodextrins; maltoporin 4521130 lamB 7002712 lamB Escherichia coli SE11 maltoporin YP_002295602.1 4519790 D 409438 CDS YP_002295603.1 209921519 7002713 4521373..4522293 1 NC_011415.1 maltose regulon periplasmic protein 4522293 7002713 ECSE_4328 Escherichia coli SE11 maltose regulon periplasmic protein YP_002295603.1 4521373 D 409438 CDS YP_002295604.1 209921520 7002714 4522522..4522716 1 NC_011415.1 hypothetical protein 4522716 7002714 ECSE_4329 Escherichia coli SE11 hypothetical protein YP_002295604.1 4522522 D 409438 CDS YP_002295605.1 209921521 7002715 4522774..4524102 1 NC_011415.1 in E. coli, some yjbl mutations have been reported as suppressors of dnaG mutations; hypothetical protein 4524102 7002715 ECSE_4330 Escherichia coli SE11 hypothetical protein YP_002295605.1 4522774 D 409438 CDS YP_002295606.1 209921522 7002716 4524325..4524822 1 NC_011415.1 catalyzes the formation of 4-hydroxybenzoate from chorismate; chorismate pyruvate lyase 4524822 ubiC 7002716 ubiC Escherichia coli SE11 chorismate pyruvate lyase YP_002295606.1 4524325 D 409438 CDS YP_002295607.1 209921523 7002717 4524835..4525707 1 NC_011415.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4525707 ubiA 7002717 ubiA Escherichia coli SE11 4-hydroxybenzoate octaprenyltransferase YP_002295607.1 4524835 D 409438 CDS YP_002295608.1 209921524 7002718 complement(4525862..4528345) 1 NC_011415.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 4528345 7002718 ECSE_4333 Escherichia coli SE11 glycerol-3-phosphate acyltransferase YP_002295608.1 4525862 R 409438 CDS YP_002295609.1 209921525 7002719 4528456..4528824 1 NC_011415.1 diacylglycerol kinase 4528824 7002719 ECSE_4334 Escherichia coli SE11 diacylglycerol kinase YP_002295609.1 4528456 D 409438 CDS YP_002295610.1 209921526 7002720 4528934..4529542 1 NC_011415.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 4529542 7002720 ECSE_4335 Escherichia coli SE11 LexA repressor YP_002295610.1 4528934 D 409438 CDS YP_002295611.1 209921527 7002721 4529561..4530940 1 NC_011415.1 DNA-damage-inducible SOS response protein 4530940 7002721 ECSE_4336 Escherichia coli SE11 DNA-damage-inducible SOS response protein YP_002295611.1 4529561 D 409438 CDS YP_002295612.1 209921528 7002722 4531050..4531265 1 NC_011415.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential; putative stress-response protein 4531265 7002722 ECSE_4337 Escherichia coli SE11 putative stress-response protein YP_002295612.1 4531050 D 409438 CDS YP_002295613.1 209921529 7002723 complement(4531307..4531822) 1 NC_011415.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB; zinc uptake transcriptional repressor 4531822 7002723 ECSE_4338 Escherichia coli SE11 zinc uptake transcriptional repressor YP_002295613.1 4531307 R 409438 CDS YP_002295614.1 209921530 7002724 4532140..4532613 1 NC_011415.1 hypothetical protein 4532613 7002724 ECSE_4339 Escherichia coli SE11 hypothetical protein YP_002295614.1 4532140 D 409438 CDS YP_002295615.1 209921531 7002725 4532829..4533152 1 NC_011415.1 hypothetical protein 4533152 7002725 ECSE_4340 Escherichia coli SE11 hypothetical protein YP_002295615.1 4532829 D 409438 CDS YP_002295616.1 209921532 7002726 4533208..4533333 1 NC_011415.1 hypothetical protein 4533333 7002726 ECSE_4341 Escherichia coli SE11 hypothetical protein YP_002295616.1 4533208 D 409438 CDS YP_002295617.1 209921533 7002727 4533533..4534552 1 NC_011415.1 tRNA-dihydrouridine synthase A 4534552 7002727 ECSE_4342 Escherichia coli SE11 tRNA-dihydrouridine synthase A YP_002295617.1 4533533 D 409438 CDS YP_002295618.1 209921534 7002728 4534686..4534928 1 NC_011415.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia; phage shock protein G 4534928 pspG 7002728 pspG Escherichia coli SE11 phage shock protein G YP_002295618.1 4534686 D 409438 CDS YP_002295619.1 209921535 7002729 complement(4535094..4536077) 1 NC_011415.1 quinone oxidoreductase, NADPH-dependent 4536077 7002729 ECSE_4344 Escherichia coli SE11 quinone oxidoreductase, NADPH-dependent YP_002295619.1 4535094 R 409438 CDS YP_002295620.1 209921536 7002730 4536160..4537575 1 NC_011415.1 unwinds double stranded DNA; replicative DNA helicase 4537575 7002730 ECSE_4345 Escherichia coli SE11 replicative DNA helicase YP_002295620.1 4536160 D 409438 CDS YP_002295621.1 209921537 7002731 4537628..4538707 1 NC_011415.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 4538707 alr 7002731 alr Escherichia coli SE11 alanine racemase YP_002295621.1 4537628 D 409438 CDS YP_002295622.1 209921538 7002732 4538960..4540153 1 NC_011415.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 4540153 7002732 ECSE_4347 Escherichia coli SE11 aromatic amino acid aminotransferase YP_002295622.1 4538960 D 409438 CDS YP_002295623.1 209921539 7002733 complement(4540478..4540897) 1 NC_011415.1 hypothetical protein 4540897 7002733 ECSE_4348 Escherichia coli SE11 hypothetical protein YP_002295623.1 4540478 R 409438 CDS YP_002295624.1 209921540 7002734 4541261..4541974 1 NC_011415.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 4541974 aphA 7002734 aphA Escherichia coli SE11 acid phosphatase/phosphotransferase YP_002295624.1 4541261 D 409438 CDS YP_002295625.1 209921541 7002735 4542085..4542501 1 NC_011415.1 hypothetical protein 4542501 7002735 ECSE_4350 Escherichia coli SE11 hypothetical protein YP_002295625.1 4542085 D 409438 CDS YP_002295626.1 209921542 7002736 4542505..4542861 1 NC_011415.1 hypothetical protein 4542861 7002736 ECSE_4351 Escherichia coli SE11 hypothetical protein YP_002295626.1 4542505 D 409438 CDS YP_002295627.1 209921543 7002737 complement(4542896..4545718) 1 NC_011415.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4545718 uvrA 7002737 uvrA Escherichia coli SE11 excinuclease ABC subunit A YP_002295627.1 4542896 R 409438 CDS YP_002295628.1 209921544 7002738 4545972..4546508 1 NC_011415.1 binds to single stranded DNA and PriA helcase facilitate replication restart; single-stranded DNA-binding protein 4546508 7002738 ECSE_4353 Escherichia coli SE11 single-stranded DNA-binding protein YP_002295628.1 4545972 D 409438 CDS YP_002295629.1 209921545 7002739 complement(4546607..4546987) 1 NC_011415.1 hypothetical protein 4546987 7002739 ECSE_4354 Escherichia coli SE11 hypothetical protein YP_002295629.1 4546607 R 409438 CDS YP_002295630.1 209921546 7002740 4547318..4548904 1 NC_011415.1 hypothetical protein 4548904 7002740 ECSE_4355 Escherichia coli SE11 hypothetical protein YP_002295630.1 4547318 D 409438 CDS YP_002295631.1 209921547 7002741 complement(4548907..4549230) 1 NC_011415.1 regulates genes involved in response to oxidative stress; DNA-binding transcriptional regulator SoxS 4549230 7002741 ECSE_4356 Escherichia coli SE11 DNA-binding transcriptional regulator SoxS YP_002295631.1 4548907 R 409438 CDS YP_002295632.1 209921548 7002742 4549316..4549780 1 NC_011415.1 redox-sensitive transcriptional activator SoxR 4549780 7002742 ECSE_4357 Escherichia coli SE11 redox-sensitive transcriptional activator SoxR YP_002295632.1 4549316 D 409438 CDS YP_002295633.1 209921549 7002743 complement(4550071..4550289) 1 NC_011415.1 hypothetical protein 4550289 7002743 ECSE_4358 Escherichia coli SE11 hypothetical protein YP_002295633.1 4550071 R 409438 CDS YP_002295634.1 209921550 7002744 4550326..4551675 1 NC_011415.1 putative xanthine/uracil transport protein 4551675 7002744 ECSE_4359 Escherichia coli SE11 putative xanthine/uracil transport protein YP_002295634.1 4550326 D 409438 CDS YP_002295635.1 209921551 7002745 4551827..4553476 1 NC_011415.1 putative sodium-proton antiporter protein 4553476 7002745 ECSE_4360 Escherichia coli SE11 putative sodium-proton antiporter protein YP_002295635.1 4551827 D 409438 CDS YP_002295636.1 209921552 7002746 complement(4553629..4554921) 1 NC_011415.1 hypothetical protein 4554921 7002746 ECSE_4361 Escherichia coli SE11 hypothetical protein YP_002295636.1 4553629 R 409438 CDS YP_002295637.1 209921553 7002747 complement(4555099..4556748) 1 NC_011415.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease 4556748 actP 7002747 actP Escherichia coli SE11 acetate permease YP_002295637.1 4555099 R 409438 CDS YP_002295638.1 209921554 7002748 complement(4556745..4557059) 1 NC_011415.1 hypothetical protein 4557059 7002748 ECSE_4363 Escherichia coli SE11 hypothetical protein YP_002295638.1 4556745 R 409438 CDS YP_002295639.1 209921555 7002749 complement(4557259..4559217) 1 NC_011415.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 4559217 7002749 ECSE_4364 Escherichia coli SE11 acetyl-CoA synthetase YP_002295639.1 4557259 R 409438 CDS YP_002295640.1 209921556 7002750 4559609..4561045 1 NC_011415.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 4561045 nrfA 7002750 nrfA Escherichia coli SE11 cytochrome c552 YP_002295640.1 4559609 D 409438 CDS YP_002295641.1 209921557 7002751 4561090..4561656 1 NC_011415.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 4561656 7002751 ECSE_4366 Escherichia coli SE11 cytochrome c nitrite reductase pentaheme subunit YP_002295641.1 4561090 D 409438 CDS YP_002295642.1 209921558 7002752 4561653..4562324 1 NC_011415.1 formate-dependent nitrite reductase nrfC subunit 4562324 7002752 ECSE_4367 Escherichia coli SE11 formate-dependent nitrite reductase nrfC subunit YP_002295642.1 4561653 D 409438 CDS YP_002295643.1 209921559 7002753 4562321..4563277 1 NC_011415.1 formate-dependent nitrite reductase nrfD subunit 4563277 7002753 ECSE_4368 Escherichia coli SE11 formate-dependent nitrite reductase nrfD subunit YP_002295643.1 4562321 D 409438 CDS YP_002295644.1 209921560 7002754 4563357..4565015 1 NC_011415.1 with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552; heme lyase subunit NrfE 4565015 7002754 ECSE_4369 Escherichia coli SE11 heme lyase subunit NrfE YP_002295644.1 4563357 D 409438 CDS YP_002295645.1 209921561 7002755 4565008..4565391 1 NC_011415.1 formate-dependent nitrite reductase complex subunit NrfF 4565391 7002755 ECSE_4370 Escherichia coli SE11 formate-dependent nitrite reductase complex subunit NrfF YP_002295645.1 4565008 D 409438 CDS YP_002295646.1 209921562 7002756 4565388..4565984 1 NC_011415.1 formate-dependent nitrite reductase complex subunit NrfG 4565984 7002756 ECSE_4371 Escherichia coli SE11 formate-dependent nitrite reductase complex subunit NrfG YP_002295646.1 4565388 D 409438 CDS YP_002295647.1 209921563 7002757 complement(4566118..4566249) 1 NC_011415.1 hypothetical protein 4566249 7002757 ECSE_4372 Escherichia coli SE11 hypothetical protein YP_002295647.1 4566118 R 409438 CDS YP_002295648.1 209921564 7002758 4566326..4567639 1 NC_011415.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system; glutamate/aspartate:proton symporter 4567639 gltP 7002758 gltP Escherichia coli SE11 glutamate/aspartate:proton symporter YP_002295648.1 4566326 D 409438 CDS YP_002295649.1 209921565 7002759 complement(4567717..4568406) 1 NC_011415.1 hypothetical protein 4568406 7002759 ECSE_4374 Escherichia coli SE11 hypothetical protein YP_002295649.1 4567717 R 409438 CDS YP_002295650.1 209921566 7002760 complement(4568500..4570179) 1 NC_011415.1 truncated formate dehydrogenase H 4570179 7002760 ECSE_4375 Escherichia coli SE11 truncated formate dehydrogenase H YP_002295650.1 4568500 R 409438 CDS YP_002295651.1 209921567 7002761 complement(4570228..4570647) 1 NC_011415.1 truncated formate dehydrogenase H 4570647 7002761 ECSE_4376 Escherichia coli SE11 truncated formate dehydrogenase H YP_002295651.1 4570228 R 409438 CDS YP_002295652.1 209921568 7002762 complement(4570845..4572311) 1 NC_011415.1 part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family; putative outer membrane efflux protein MdtP 4572311 7002762 ECSE_4377 Escherichia coli SE11 putative outer membrane efflux protein MdtP YP_002295652.1 4570845 R 409438 CDS YP_002295653.1 209921569 7002763 complement(4572308..4574359) 1 NC_011415.1 possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug efflux system protein MdtO 4574359 7002763 ECSE_4378 Escherichia coli SE11 multidrug efflux system protein MdtO YP_002295653.1 4572308 R 409438 CDS YP_002295654.1 209921570 7002764 complement(4574359..4575390) 1 NC_011415.1 with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride; multidrug resistance protein MdtN 4575390 7002764 ECSE_4379 Escherichia coli SE11 multidrug resistance protein MdtN YP_002295654.1 4574359 R 409438 CDS YP_002295655.1 209921571 7002765 complement(4575409..4575684) 1 NC_011415.1 hypothetical protein 4575684 7002765 ECSE_4380 Escherichia coli SE11 hypothetical protein YP_002295655.1 4575409 R 409438 CDS YP_002295656.1 209921572 7002766 complement(4575893..4577890) 1 NC_011415.1 hypothetical protein 4577890 7002766 ECSE_4381 Escherichia coli SE11 hypothetical protein YP_002295656.1 4575893 R 409438 CDS YP_002295657.1 209921573 7002767 complement(4578151..4579080) 1 NC_011415.1 D-allose kinase 4579080 7002767 ECSE_4382 Escherichia coli SE11 D-allose kinase YP_002295657.1 4578151 R 409438 CDS YP_002295658.1 209921574 7002768 complement(4579064..4579759) 1 NC_011415.1 allulose-6-phosphate 3-epimerase 4579759 7002768 ECSE_4383 Escherichia coli SE11 allulose-6-phosphate 3-epimerase YP_002295658.1 4579064 R 409438 CDS YP_002295659.1 209921575 7002769 complement(4579770..4580750) 1 NC_011415.1 D-allose transporter subunit 4580750 7002769 ECSE_4384 Escherichia coli SE11 D-allose transporter subunit YP_002295659.1 4579770 R 409438 CDS YP_002295660.1 209921576 7002770 complement(4580729..4582261) 1 NC_011415.1 with AlsBC acts to import allose into the cell; AlsA contain 2 ATP-binding domains; D-allose transporter ATP-binding protein 4582261 7002770 ECSE_4385 Escherichia coli SE11 D-allose transporter ATP-binding protein YP_002295660.1 4580729 R 409438 CDS YP_002295661.1 209921577 7002771 complement(4582388..4583323) 1 NC_011415.1 D-allose transporter subunit 4583323 7002771 ECSE_4386 Escherichia coli SE11 D-allose transporter subunit YP_002295661.1 4582388 R 409438 CDS YP_002295662.1 209921578 7002772 complement(4583382..4584272) 1 NC_011415.1 involved in rpiB and als operon repression; DNA-binding transcriptional repressor RpiR 4584272 7002772 ECSE_4387 Escherichia coli SE11 DNA-binding transcriptional repressor RpiR YP_002295662.1 4583382 R 409438 CDS YP_002295663.1 209921579 7002773 complement(4584426..4584647) 1 NC_011415.1 hypothetical protein 4584647 7002773 ECSE_4389 Escherichia coli SE11 hypothetical protein YP_002295663.1 4584426 R 409438 CDS YP_002295664.1 209921580 7002775 4584632..4585081 1 NC_011415.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 4585081 7002775 ECSE_4388 Escherichia coli SE11 ribose-5-phosphate isomerase B YP_002295664.1 4584632 D 409438 CDS YP_002295665.1 209921581 7002774 4585150..4585479 1 NC_011415.1 hypothetical protein 4585479 7002774 ECSE_4390 Escherichia coli SE11 hypothetical protein YP_002295665.1 4585150 D 409438 CDS YP_002295666.1 209921582 7002776 complement(4585626..4586384) 1 NC_011415.1 required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 4586384 phnP 7002776 phnP Escherichia coli SE11 carbon-phosphorus lyase complex accessory protein YP_002295666.1 4585626 R 409438 CDS YP_002295667.1 209921583 7002777 complement(4586386..4586820) 1 NC_011415.1 PhnO in Salmonella enterica catalyzes the acetylation of a range of aminoalkylphosphonic acids; part of the biochemical pathway that enables the cell to use phosphonates as a phosphorus source; Escherichia coli uses a different mechanism of phosphonate catabolism where PhnO is not essential and seems to play a regulatory role; aminoalkylphosphonic acid N-acetyltransferase 4586820 7002777 ECSE_4392 Escherichia coli SE11 aminoalkylphosphonic acid N-acetyltransferase YP_002295667.1 4586386 R 409438 CDS YP_002295668.1 209921584 7002778 complement(4586807..4587364) 1 NC_011415.1 ribose 1,5-bisphosphokinase 4587364 7002778 ECSE_4393 Escherichia coli SE11 ribose 1,5-bisphosphokinase YP_002295668.1 4586807 R 409438 CDS YP_002295669.1 209921585 7002779 complement(4587364..4588500) 1 NC_011415.1 phosphonate metabolism protein 4588500 7002779 ECSE_4394 Escherichia coli SE11 phosphonate metabolism protein YP_002295669.1 4587364 R 409438 CDS YP_002295670.1 209921586 7002780 complement(4588497..4589177) 1 NC_011415.1 phosphonate ABC transporter ATP-binding protein 4589177 7002780 ECSE_4395 Escherichia coli SE11 phosphonate ABC transporter ATP-binding protein YP_002295670.1 4588497 R 409438 CDS YP_002295671.1 209921587 7002781 complement(4589288..4590046) 1 NC_011415.1 phosphonate C-P lyase system protein PhnK 4590046 phnK 7002781 phnK Escherichia coli SE11 phosphonate C-P lyase system protein PhnK YP_002295671.1 4589288 R 409438 CDS YP_002295672.1 209921588 7002782 complement(4590043..4590888) 1 NC_011415.1 phosphonate metabolism protein 4590888 7002782 ECSE_4397 Escherichia coli SE11 phosphonate metabolism protein YP_002295672.1 4590043 R 409438 CDS YP_002295673.1 209921589 7002783 complement(4590881..4591945) 1 NC_011415.1 phosphonate metabolism protein 4591945 7002783 ECSE_4398 Escherichia coli SE11 phosphonate metabolism protein YP_002295673.1 4590881 R 409438 CDS YP_002295674.1 209921590 7002784 complement(4591945..4592529) 1 NC_011415.1 carbon-phosphorus lyase complex subunit 4592529 phnH 7002784 phnH Escherichia coli SE11 carbon-phosphorus lyase complex subunit YP_002295674.1 4591945 R 409438 CDS YP_002295675.1 209921591 7002785 complement(4592526..4592978) 1 NC_011415.1 phosphonate metabolism protein 4592978 7002785 ECSE_4400 Escherichia coli SE11 phosphonate metabolism protein YP_002295675.1 4592526 R 409438 CDS YP_002295676.1 209921592 7002786 complement(4592979..4593704) 1 NC_011415.1 may be involved in phosphonate uptake and biodegradation; phosphonate metabolism transcriptional regulator PhnF 4593704 7002786 ECSE_4401 Escherichia coli SE11 phosphonate metabolism transcriptional regulator PhnF YP_002295676.1 4592979 R 409438 CDS YP_002295677.1 209921593 7002787 complement(4593725..4594504) 1 NC_011415.1 phosphonate ABC transporter permease 4594504 7002787 ECSE_4402 Escherichia coli SE11 phosphonate ABC transporter permease YP_002295677.1 4593725 R 409438 CDS YP_002295678.1 209921594 7002788 complement(4594610..4595626) 1 NC_011415.1 phosphonate ABC transporter substrate binding component 4595626 7002788 ECSE_4403 Escherichia coli SE11 phosphonate ABC transporter substrate binding component YP_002295678.1 4594610 R 409438 CDS YP_002295679.1 209921595 7002789 complement(4595651..4596439) 1 NC_011415.1 phosphonate/organophosphate ester transporter subunit 4596439 7002789 ECSE_4404 Escherichia coli SE11 phosphonate/organophosphate ester transporter subunit YP_002295679.1 4595651 R 409438 CDS YP_002295680.1 209921596 7002790 complement(4596572..4597015) 1 NC_011415.1 hypothetical protein 4597015 7002790 ECSE_4405 Escherichia coli SE11 hypothetical protein YP_002295680.1 4596572 R 409438 CDS YP_002295681.1 209921597 7002791 complement(4597175..4597510) 1 NC_011415.1 hypothetical protein 4597510 7002791 ECSE_4406 Escherichia coli SE11 hypothetical protein YP_002295681.1 4597175 R 409438 CDS YP_002295682.1 209921598 7002792 4597912..4600140 1 NC_011415.1 hypothetical protein 4600140 7002792 ECSE_4407 Escherichia coli SE11 hypothetical protein YP_002295682.1 4597912 D 409438 CDS YP_002295683.1 209921599 7002793 4600170..4601015 1 NC_011415.1 hypothetical protein 4601015 7002793 ECSE_4408 Escherichia coli SE11 hypothetical protein YP_002295683.1 4600170 D 409438 CDS YP_002295684.1 209921600 7002794 4601279..4602781 1 NC_011415.1 proline/glycine betaine transporter 4602781 7002794 ECSE_4409 Escherichia coli SE11 proline/glycine betaine transporter YP_002295684.1 4601279 D 409438 CDS YP_002295685.1 209921601 7002795 complement(4602958..4604049) 1 NC_011415.1 sensor protein BasS/PmrB 4604049 7002795 ECSE_4410 Escherichia coli SE11 sensor protein BasS/PmrB YP_002295685.1 4602958 R 409438 CDS YP_002295686.1 209921602 7002796 complement(4604059..4604727) 1 NC_011415.1 response regulator in two-component regulatory system with BasS; DNA-binding transcriptional regulator BasR 4604727 7002796 ECSE_4411 Escherichia coli SE11 DNA-binding transcriptional regulator BasR YP_002295686.1 4604059 R 409438 CDS YP_002295687.1 209921603 7002797 complement(4604724..4606397) 1 NC_011415.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division; putative cell division protein 4606397 7002797 ECSE_4412 Escherichia coli SE11 putative cell division protein YP_002295687.1 4604724 R 409438 CDS YP_002295688.1 209921604 7002798 complement(4606471..4607808) 1 NC_011415.1 arginine:agmatin antiporter 4607808 7002798 ECSE_4413 Escherichia coli SE11 arginine:agmatin antiporter YP_002295688.1 4606471 R 409438 CDS YP_002295689.1 209921605 7002799 complement(4607945..4608706) 1 NC_011415.1 putative transcriptional regulator 4608706 7002799 ECSE_4414 Escherichia coli SE11 putative transcriptional regulator YP_002295689.1 4607945 R 409438 CDS YP_002295690.1 209921606 7002800 complement(4609031..4611301) 1 NC_011415.1 arginine decarboxylase 4611301 7002800 ECSE_4415 Escherichia coli SE11 arginine decarboxylase YP_002295690.1 4609031 R 409438 CDS YP_002295691.1 209921607 7002801 complement(4611497..4612405) 1 NC_011415.1 DNA-binding transcriptional regulator MelR 4612405 7002801 ECSE_4416 Escherichia coli SE11 DNA-binding transcriptional regulator MelR YP_002295691.1 4611497 R 409438 CDS YP_002295692.1 209921608 7002802 4612688..4614043 1 NC_011415.1 alpha-galactosidase 4614043 7002802 ECSE_4417 Escherichia coli SE11 alpha-galactosidase YP_002295692.1 4612688 D 409438 CDS YP_002295693.1 209921609 7002803 4614158..4615567 1 NC_011415.1 melibiose:sodium symporter 4615567 7002803 ECSE_4418 Escherichia coli SE11 melibiose:sodium symporter YP_002295693.1 4614158 D 409438 CDS YP_002295694.1 209921610 7002804 complement(4615706..4616335) 1 NC_011415.1 hypothetical protein 4616335 7002804 ECSE_4419 Escherichia coli SE11 hypothetical protein YP_002295694.1 4615706 R 409438 CDS YP_002295695.1 209921611 7002805 complement(4616458..4618104) 1 NC_011415.1 fumarase B 4618104 7002805 ECSE_4420 Escherichia coli SE11 fumarase B YP_002295695.1 4616458 R 409438 CDS YP_002295696.1 209921612 7002806 complement(4618182..4619522) 1 NC_011415.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 4619522 7002806 ECSE_4421 Escherichia coli SE11 anaerobic C4-dicarboxylate transporter YP_002295696.1 4618182 R 409438 CDS YP_002295697.1 209921613 7002807 complement(4620093..4620812) 1 NC_011415.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration; DNA-binding transcriptional activator DcuR 4620812 7002807 ECSE_4422 Escherichia coli SE11 DNA-binding transcriptional activator DcuR YP_002295697.1 4620093 R 409438 CDS YP_002295698.1 209921614 7002808 complement(4620809..4622440) 1 NC_011415.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 4622440 7002808 ECSE_4423 Escherichia coli SE11 sensory histidine kinase DcuS YP_002295698.1 4620809 R 409438 CDS YP_002295699.1 209921615 7002809 4622621..4622851 1 NC_011415.1 hypothetical protein 4622851 7002809 ECSE_4424 Escherichia coli SE11 hypothetical protein YP_002295699.1 4622621 D 409438 CDS YP_002295700.1 209921616 7002810 4622863..4623135 1 NC_011415.1 hypothetical protein 4623135 7002810 ECSE_4425 Escherichia coli SE11 hypothetical protein YP_002295700.1 4622863 D 409438 CDS YP_002295701.1 209921617 7002811 4623362..4623658 1 NC_011415.1 hypothetical protein 4623658 7002811 ECSE_4426 Escherichia coli SE11 hypothetical protein YP_002295701.1 4623362 D 409438 CDS YP_002295702.1 209921618 7002812 4623686..4623859 1 NC_011415.1 hypothetical protein 4623859 7002812 ECSE_4427 Escherichia coli SE11 hypothetical protein YP_002295702.1 4623686 D 409438 CDS YP_002295703.1 209921619 7002813 4623869..4624012 1 NC_011415.1 hypothetical protein 4624012 7002813 ECSE_4428 Escherichia coli SE11 hypothetical protein YP_002295703.1 4623869 D 409438 CDS YP_002295704.1 209921620 7002814 complement(4623978..4625495) 1 NC_011415.1 class II; inducible; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; induced by high temperature, anaerobiosis, and low pH; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 4625495 7002814 ECSE_4429 Escherichia coli SE11 lysyl-tRNA synthetase YP_002295704.1 4623978 R 409438 CDS YP_002295705.1 209921621 7002815 complement(4625732..4627189) 1 NC_011415.1 putative peptide transport protein 4627189 7002815 ECSE_4430 Escherichia coli SE11 putative peptide transport protein YP_002295705.1 4625732 R 409438 CDS YP_002295706.1 209921622 7002816 complement(4627248..4629395) 1 NC_011415.1 lysine decarboxylase 4629395 7002816 ECSE_4431 Escherichia coli SE11 lysine decarboxylase YP_002295706.1 4627248 R 409438 CDS YP_002295707.1 209921623 7002817 complement(4629475..4630809) 1 NC_011415.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 4630809 cadB 7002817 cadB Escherichia coli SE11 lysine/cadaverine antiporter YP_002295707.1 4629475 R 409438 CDS YP_002295708.1 209921624 7002818 complement(4631174..4632712) 1 NC_011415.1 regulates the cadBA operon; DNA-binding transcriptional activator CadC 4632712 7002818 ECSE_4433 Escherichia coli SE11 DNA-binding transcriptional activator CadC YP_002295708.1 4631174 R 409438 CDS YP_002295709.1 209921625 7003124 complement(4633511..4634086) 1 NC_011415.1 putative transcriptional regulator 4634086 7003124 ECSE_4434 Escherichia coli SE11 putative transcriptional regulator YP_002295709.1 4633511 R 409438 CDS YP_002295710.1 209921626 7002820 complement(4634123..4635820) 1 NC_011415.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 4635820 dipZ 7002820 dipZ Escherichia coli SE11 thiol:disulfide interchange protein precursor YP_002295710.1 4634123 R 409438 CDS YP_002295711.1 209921627 7002821 complement(4635796..4636134) 1 NC_011415.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals; divalent-cation tolerance protein CutA 4636134 7002821 ECSE_4436 Escherichia coli SE11 divalent-cation tolerance protein CutA YP_002295711.1 4635796 R 409438 CDS YP_002295712.1 209921628 7002822 complement(4636250..4637551) 1 NC_011415.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 4637551 7002822 ECSE_4437 Escherichia coli SE11 anaerobic C4-dicarboxylate transporter YP_002295712.1 4636250 R 409438 CDS YP_002295713.1 209921629 7002823 complement(4637669..4639105) 1 NC_011415.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 4639105 aspA 7002823 aspA Escherichia coli SE11 aspartate ammonia-lyase YP_002295713.1 4637669 R 409438 CDS YP_002295714.1 209921630 7002824 4639442..4639918 1 NC_011415.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 4639918 fxsA 7002824 fxsA Escherichia coli SE11 FxsA YP_002295714.1 4639442 D 409438 CDS YP_002295715.1 209921631 7002825 complement(4639934..4641190) 1 NC_011415.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 4641190 7002825 ECSE_4440 Escherichia coli SE11 inner membrane protein YjeH YP_002295715.1 4639934 R 409438 CDS YP_002295716.1 209921632 7002826 4641466..4641759 1 NC_011415.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4641759 groES 7002826 groES Escherichia coli SE11 co-chaperonin GroES YP_002295716.1 4641466 D 409438 CDS YP_002295717.1 209921633 7002827 4641803..4643449 1 NC_011415.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4643449 groEL 7002827 groEL Escherichia coli SE11 chaperonin GroEL YP_002295717.1 4641803 D 409438 CDS YP_002295718.1 209921634 7002828 4643587..4643940 1 NC_011415.1 hypothetical protein 4643940 7002828 ECSE_4443 Escherichia coli SE11 hypothetical protein YP_002295718.1 4643587 D 409438 CDS YP_002295719.1 209921635 7002829 4644193..4645173 1 NC_011415.1 transposase 4645173 7002829 ECSE_4444 Escherichia coli SE11 transposase YP_002295719.1 4644193 D 409438 CDS YP_002295720.1 209921636 7002830 complement(4645422..4646291) 1 NC_011415.1 hypothetical protein 4646291 7002830 ECSE_4445 Escherichia coli SE11 hypothetical protein YP_002295720.1 4645422 R 409438 CDS YP_002295721.1 209921637 7002831 complement(4646681..4647709) 1 NC_011415.1 hypothetical protein 4647709 7002831 ECSE_4446 Escherichia coli SE11 hypothetical protein YP_002295721.1 4646681 R 409438 CDS YP_002295722.1 209921638 7002832 4647751..4648317 1 NC_011415.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 4648317 7002832 ECSE_4447 Escherichia coli SE11 elongation factor P YP_002295722.1 4647751 D 409438 CDS YP_002295723.1 209921639 7002833 4648369..4648494 1 NC_011415.1 acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex; entericidin A 4648494 7002833 ECSE_4448 Escherichia coli SE11 entericidin A YP_002295723.1 4648369 D 409438 CDS YP_002295724.1 209921640 7002834 4648605..4648751 1 NC_011415.1 entericidin B membrane lipoprotein 4648751 7002834 ECSE_4449 Escherichia coli SE11 entericidin B membrane lipoprotein YP_002295724.1 4648605 D 409438 CDS YP_002295725.1 209921641 7002835 4648783..4649250 1 NC_011415.1 suppresser of groEL 4649250 7002835 ECSE_4450 Escherichia coli SE11 suppresser of groEL YP_002295725.1 4648783 D 409438 CDS YP_002295726.1 209921642 7002836 complement(4649247..4649780) 1 NC_011415.1 lipocalin; globomycin-sensitive outer membrane lipoprotein; outer membrane lipoprotein Blc 4649780 7002836 ECSE_4451 Escherichia coli SE11 outer membrane lipoprotein Blc YP_002295726.1 4649247 R 409438 CDS YP_002295727.1 209921643 7002837 complement(4649869..4651002) 1 NC_011415.1 beta-lactamase 4651002 ampC 7002837 ampC Escherichia coli SE11 beta-lactamase YP_002295727.1 4649869 R 409438 CDS YP_002295728.1 209921644 7002838 complement(4651065..4651424) 1 NC_011415.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 4651424 7002838 ECSE_4453 Escherichia coli SE11 fumarate reductase subunit D YP_002295728.1 4651065 R 409438 CDS YP_002295729.1 209921645 7002839 complement(4651435..4651830) 1 NC_011415.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 4651830 7002839 ECSE_4454 Escherichia coli SE11 fumarate reductase subunit C YP_002295729.1 4651435 R 409438 CDS YP_002295730.1 209921646 7002840 complement(4651841..4652575) 1 NC_011415.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 4652575 7002840 ECSE_4455 Escherichia coli SE11 fumarate reductase iron-sulfur subunit YP_002295730.1 4651841 R 409438 CDS YP_002295731.1 209921647 7002841 complement(4652568..4654376) 1 NC_011415.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 4654376 7002841 ECSE_4456 Escherichia coli SE11 fumarate reductase flavoprotein subunit YP_002295731.1 4652568 R 409438 CDS YP_002295732.1 209921648 7002842 4654701..4655678 1 NC_011415.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 4655678 7002842 ECSE_4457 Escherichia coli SE11 lysyl-tRNA synthetase YP_002295732.1 4654701 D 409438 CDS YP_002295733.1 209921649 7002843 4655897..4657399 1 NC_011415.1 putative transport protein 4657399 7002843 ECSE_4458 Escherichia coli SE11 putative transport protein YP_002295733.1 4655897 D 409438 CDS YP_002295734.1 209921650 7002844 complement(4657550..4660873) 1 NC_011415.1 hypothetical protein 4660873 7002844 ECSE_4459 Escherichia coli SE11 hypothetical protein YP_002295734.1 4657550 R 409438 CDS YP_002295735.1 209921651 7002845 complement(4660895..4661863) 1 NC_011415.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 4661863 psd 7002845 psd Escherichia coli SE11 phosphatidylserine decarboxylase YP_002295735.1 4660895 R 409438 CDS YP_002295736.1 209921652 7002846 complement(4661960..4663012) 1 NC_011415.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 4663012 7002846 ECSE_4461 Escherichia coli SE11 ribosome-associated GTPase YP_002295736.1 4661960 R 409438 CDS YP_002295737.1 209921653 7002847 4663107..4663652 1 NC_011415.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 4663652 7002847 ECSE_4462 Escherichia coli SE11 oligoribonuclease YP_002295737.1 4663107 D 409438 CDS YP_002295738.1 209921654 7003119 complement(4664431..4665570) 1 NC_011415.1 hypothetical protein 4665570 7003119 ECSE_4464 Escherichia coli SE11 hypothetical protein YP_002295738.1 4664431 R 409438 CDS YP_002295739.1 209921655 7002850 4665569..4667116 1 NC_011415.1 hypothetical protein 4667116 7002850 ECSE_4463 Escherichia coli SE11 hypothetical protein YP_002295739.1 4665569 D 409438 CDS YP_002295740.1 209921656 7002849 4667088..4667549 1 NC_011415.1 possibly involved in cell wall synthesis; putative ATPase 4667549 7002849 ECSE_4465 Escherichia coli SE11 putative ATPase YP_002295740.1 4667088 D 409438 CDS YP_002295741.1 209921657 7002851 4667568..4668905 1 NC_011415.1 N-acetylmuramoyl-l-alanine amidase II 4668905 7002851 ECSE_4466 Escherichia coli SE11 N-acetylmuramoyl-l-alanine amidase II YP_002295741.1 4667568 D 409438 CDS YP_002295742.1 209921658 7002852 4668915..4670762 1 NC_011415.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 4670762 mutL 7002852 mutL Escherichia coli SE11 DNA mismatch repair protein YP_002295742.1 4668915 D 409438 CDS YP_002295743.1 209921659 7002853 4670755..4671705 1 NC_011415.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 4671705 miaA 7002853 miaA Escherichia coli SE11 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002295743.1 4670755 D 409438 CDS YP_002295744.1 209921660 7002854 4671791..4672099 1 NC_011415.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 4672099 hfq 7002854 hfq Escherichia coli SE11 RNA-binding protein Hfq YP_002295744.1 4671791 D 409438 CDS YP_002295745.1 209921661 7002855 4672175..4673455 1 NC_011415.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein; putative GTPase HflX 4673455 7002855 ECSE_4470 Escherichia coli SE11 putative GTPase HflX YP_002295745.1 4672175 D 409438 CDS YP_002295746.1 209921662 7002856 4673541..4674800 1 NC_011415.1 with HflC inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflK 4674800 7002856 ECSE_4471 Escherichia coli SE11 FtsH protease regulator HflK YP_002295746.1 4673541 D 409438 CDS YP_002295747.1 209921663 7002857 4674803..4675807 1 NC_011415.1 with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 4675807 7002857 ECSE_4472 Escherichia coli SE11 FtsH protease regulator HflC YP_002295747.1 4674803 D 409438 CDS YP_002295748.1 209921664 7002858 4675889..4676086 1 NC_011415.1 hypothetical protein 4676086 7002858 ECSE_4473 Escherichia coli SE11 hypothetical protein YP_002295748.1 4675889 D 409438 CDS YP_002295749.1 209921665 7002859 4676190..4677488 1 NC_011415.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4677488 7002859 ECSE_4474 Escherichia coli SE11 adenylosuccinate synthetase YP_002295749.1 4676190 D 409438 CDS YP_002295750.1 209921666 7002860 4677693..4678118 1 NC_011415.1 negatively regulates the transcription of genes upregulated by nitrosative stress; transcriptional repressor NsrR 4678118 7002860 ECSE_4475 Escherichia coli SE11 transcriptional repressor NsrR YP_002295750.1 4677693 D 409438 CDS YP_002295751.1 209921667 7002861 4678115..4680598 1 NC_011415.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 4680598 7002861 ECSE_4476 Escherichia coli SE11 exoribonuclease R YP_002295751.1 4678115 D 409438 CDS YP_002295752.1 209921668 7002862 4680641..4680778 1 NC_011415.1 hypothetical protein 4680778 7002862 ECSE_4477 Escherichia coli SE11 hypothetical protein YP_002295752.1 4680641 D 409438 CDS YP_002295753.1 209921669 7002863 4680778..4681509 1 NC_011415.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 4681509 7002863 ECSE_4478 Escherichia coli SE11 23S rRNA (guanosine-2'-O-)-methyltransferase YP_002295753.1 4680778 D 409438 CDS YP_002295754.1 209921670 7002864 4681636..4682037 1 NC_011415.1 hypothetical protein 4682037 7002864 ECSE_4479 Escherichia coli SE11 hypothetical protein YP_002295754.1 4681636 D 409438 CDS YP_002295755.1 209921671 7002865 4682056..4682754 1 NC_011415.1 putative phage shock protein 4682754 7002865 ECSE_4480 Escherichia coli SE11 putative phage shock protein YP_002295755.1 4682056 D 409438 CDS YP_002295756.1 209921672 7002866 4682805..4683464 1 NC_011415.1 hypothetical protein 4683464 7002866 ECSE_4481 Escherichia coli SE11 hypothetical protein YP_002295756.1 4682805 D 409438 CDS YP_002295757.1 209921673 7002867 4683482..4683880 1 NC_011415.1 hypothetical protein 4683880 7002867 ECSE_4482 Escherichia coli SE11 hypothetical protein YP_002295757.1 4683482 D 409438 CDS YP_002295758.1 209921674 7002868 4683890..4684528 1 NC_011415.1 hypothetical protein 4684528 7002868 ECSE_4483 Escherichia coli SE11 hypothetical protein YP_002295758.1 4683890 D 409438 CDS YP_002295759.1 209921675 7002869 4684531..4685694 1 NC_011415.1 hypothetical protein 4685694 7002869 ECSE_4484 Escherichia coli SE11 hypothetical protein YP_002295759.1 4684531 D 409438 CDS YP_002295760.1 209921676 7002870 4685763..4687403 1 NC_011415.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA; isovaleryl CoA dehydrogenase 4687403 7002870 ECSE_4485 Escherichia coli SE11 isovaleryl CoA dehydrogenase YP_002295760.1 4685763 D 409438 CDS YP_002295761.1 209921677 7002871 complement(4687520..4687795) 1 NC_011415.1 hypothetical protein 4687795 7002871 ECSE_4486 Escherichia coli SE11 hypothetical protein YP_002295761.1 4687520 R 409438 CDS YP_002295762.1 209921678 7002872 complement(4687944..4688273) 1 NC_011415.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility; putative biofilm stress and motility protein A 4688273 7002872 ECSE_4487 Escherichia coli SE11 putative biofilm stress and motility protein A YP_002295762.1 4687944 R 409438 CDS YP_002295763.1 209921679 7002873 4688455..4689204 1 NC_011415.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo; esterase 4689204 7002873 ECSE_4488 Escherichia coli SE11 esterase YP_002295763.1 4688455 D 409438 CDS YP_002295764.1 209921680 7002874 complement(4689201..4689956) 1 NC_011415.1 negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 4689956 7002874 ECSE_4489 Escherichia coli SE11 transcriptional repressor UlaR YP_002295764.1 4689201 R 409438 CDS YP_002295765.1 209921681 7002875 complement(4690064..4691128) 1 NC_011415.1 putative L-ascorbate 6-phosphate lactonase 4691128 7002875 ECSE_4490 Escherichia coli SE11 putative L-ascorbate 6-phosphate lactonase YP_002295765.1 4690064 R 409438 CDS YP_002295766.1 209921682 7002876 4691426..4692880 1 NC_011415.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 4692880 ulaA 7002876 ulaA Escherichia coli SE11 PTS system ascorbate-specific transporter subunit IIC YP_002295766.1 4691426 D 409438 CDS YP_002295767.1 209921683 7002877 4692896..4693201 1 NC_011415.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIB 4693201 7002877 ECSE_4492 Escherichia coli SE11 PTS system L-ascorbate-specific transporter subunit IIB YP_002295767.1 4692896 D 409438 CDS YP_002295768.1 209921684 7002878 4693211..4693675 1 NC_011415.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake; PTS system L-ascorbate-specific transporter subunit IIA 4693675 7002878 ECSE_4493 Escherichia coli SE11 PTS system L-ascorbate-specific transporter subunit IIA YP_002295768.1 4693211 D 409438 CDS YP_002295769.1 209921685 7002879 4693689..4694339 1 NC_011415.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 4694339 ulaD 7002879 ulaD Escherichia coli SE11 3-keto-L-gulonate-6-phosphate decarboxylase YP_002295769.1 4693689 D 409438 CDS YP_002295770.1 209921686 7002880 4694349..4695203 1 NC_011415.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway; L-xylulose 5-phosphate 3-epimerase 4695203 7002880 ECSE_4495 Escherichia coli SE11 L-xylulose 5-phosphate 3-epimerase YP_002295770.1 4694349 D 409438 CDS YP_002295771.1 209921687 7002881 4695203..4695889 1 NC_011415.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 4695889 sgaE 7002881 sgaE Escherichia coli SE11 L-ribulose-5-phosphate 4-epimerase YP_002295771.1 4695203 D 409438 CDS YP_002295772.1 209921688 7002882 4695984..4696535 1 NC_011415.1 hypothetical protein 4696535 7002882 ECSE_4497 Escherichia coli SE11 hypothetical protein YP_002295772.1 4695984 D 409438 CDS YP_002295773.1 209921689 7002883 complement(4696610..4696885) 1 NC_011415.1 hypothetical protein 4696885 7002883 ECSE_4498 Escherichia coli SE11 hypothetical protein YP_002295773.1 4696610 R 409438 CDS YP_002295774.1 209921690 7002884 4697212..4697607 1 NC_011415.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 4697607 rpsF 7002884 rpsF Escherichia coli SE11 30S ribosomal protein S6 YP_002295774.1 4697212 D 409438 CDS YP_002295775.1 209921691 7002885 4697614..4697928 1 NC_011415.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 4697928 7002885 ECSE_4500 Escherichia coli SE11 primosomal replication protein N YP_002295775.1 4697614 D 409438 CDS YP_002295776.1 209921692 7002886 4697933..4698160 1 NC_011415.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 4698160 rpsR 7002886 rpsR Escherichia coli SE11 30S ribosomal protein S18 YP_002295776.1 4697933 D 409438 CDS YP_002295777.1 209921693 7002887 4698202..4698651 1 NC_011415.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4698651 rplI 7002887 rplI Escherichia coli SE11 50S ribosomal protein L9 YP_002295777.1 4698202 D 409438 CDS YP_002295778.1 209921694 7002888 complement(4698763..4699734) 1 NC_011415.1 putative dicarboxylate-binding periplasmic protein 4699734 7002888 ECSE_4503 Escherichia coli SE11 putative dicarboxylate-binding periplasmic protein YP_002295778.1 4698763 R 409438 CDS YP_002295779.1 209921695 7002889 complement(4699787..4701088) 1 NC_011415.1 putative transport protein 4701088 7002889 ECSE_4504 Escherichia coli SE11 putative transport protein YP_002295779.1 4699787 R 409438 CDS YP_002295780.1 209921696 7002890 complement(4701131..4701607) 1 NC_011415.1 hypothetical protein 4701607 7002890 ECSE_4505 Escherichia coli SE11 hypothetical protein YP_002295780.1 4701131 R 409438 CDS YP_002295781.1 209921697 7002891 complement(4701628..4703709) 1 NC_011415.1 putative oxidoreductase 4703709 7002891 ECSE_4506 Escherichia coli SE11 putative oxidoreductase YP_002295781.1 4701628 R 409438 CDS YP_002295782.1 209921698 7002892 complement(4703706..4705247) 1 NC_011415.1 coenzyme A transferase 4705247 7002892 ECSE_4507 Escherichia coli SE11 coenzyme A transferase YP_002295782.1 4703706 R 409438 CDS YP_002295783.1 209921699 7002893 complement(4705257..4706033) 1 NC_011415.1 hypothetical protein 4706033 7002893 ECSE_4508 Escherichia coli SE11 hypothetical protein YP_002295783.1 4705257 R 409438 CDS YP_002295784.1 209921700 7002894 complement(4706043..4706885) 1 NC_011415.1 hypothetical protein 4706885 7002894 ECSE_4509 Escherichia coli SE11 hypothetical protein YP_002295784.1 4706043 R 409438 CDS YP_002295785.1 209921701 7002895 complement(4706895..4707686) 1 NC_011415.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 4707686 7002895 ECSE_4510 Escherichia coli SE11 3-ketoacyl-(acyl-carrier-protein) reductase YP_002295785.1 4706895 R 409438 CDS YP_002295786.1 209921702 7002896 4707809..4708534 1 NC_011415.1 hypothetical protein 4708534 7002896 ECSE_4511 Escherichia coli SE11 hypothetical protein YP_002295786.1 4707809 D 409438 CDS YP_002295787.1 209921703 7002897 complement(4708535..4709164) 1 NC_011415.1 hypothetical protein 4709164 7002897 ECSE_4512 Escherichia coli SE11 hypothetical protein YP_002295787.1 4708535 R 409438 CDS YP_002295788.1 209921704 7002898 4709383..4710003 1 NC_011415.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase 4710003 7002898 ECSE_4513 Escherichia coli SE11 peptidyl-prolyl cis-trans isomerase YP_002295788.1 4709383 D 409438 CDS YP_002295789.1 209921705 7002899 4710312..4711724 1 NC_011415.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine; D-alanine/D-serine/glycine permease 4711724 7002899 ECSE_4514 Escherichia coli SE11 D-alanine/D-serine/glycine permease YP_002295789.1 4710312 D 409438 CDS YP_002295790.1 209921706 7002900 complement(4711769..4712431) 1 NC_011415.1 Involved in anaerobic NO protection and iron metabolism; iron-sulfur cluster repair di-iron protein 4712431 7002900 ECSE_4515 Escherichia coli SE11 iron-sulfur cluster repair di-iron protein YP_002295790.1 4711769 R 409438 CDS YP_002295791.1 209921707 7002901 complement(4712539..4713504) 1 NC_011415.1 hypothetical protein 4713504 7002901 ECSE_4516 Escherichia coli SE11 hypothetical protein YP_002295791.1 4712539 R 409438 CDS YP_002295792.1 209921708 7002902 complement(4713612..4714472) 1 NC_011415.1 putative oxidoreductase 4714472 7002902 ECSE_4517 Escherichia coli SE11 putative oxidoreductase YP_002295792.1 4713612 R 409438 CDS YP_002295793.1 209921709 7002903 4714561..4714941 1 NC_011415.1 hypothetical protein 4714941 7002903 ECSE_4518 Escherichia coli SE11 hypothetical protein YP_002295793.1 4714561 D 409438 CDS YP_002295794.1 209921710 7002904 complement(4715070..4717013) 1 NC_011415.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 4717013 cpdB 7002904 cpdB Escherichia coli SE11 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein YP_002295794.1 4715070 R 409438 CDS YP_002295795.1 209921711 7002905 4717203..4717943 1 NC_011415.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate; adenosine-3'(2'),5'-bisphosphate nucleotidase 4717943 7002905 ECSE_4520 Escherichia coli SE11 adenosine-3'(2'),5'-bisphosphate nucleotidase YP_002295795.1 4717203 D 409438 CDS YP_002295796.1 209921712 7002906 complement(4717933..4718490) 1 NC_011415.1 hypothetical protein 4718490 7002906 ECSE_4521 Escherichia coli SE11 hypothetical protein YP_002295796.1 4717933 R 409438 CDS YP_002295797.1 209921713 7002907 4718815..4719021 1 NC_011415.1 hypothetical protein 4719021 7002907 ECSE_4522 Escherichia coli SE11 hypothetical protein YP_002295797.1 4718815 D 409438 CDS YP_002295798.1 209921714 7002908 complement(4719083..4720426) 1 NC_011415.1 putative transport protein 4720426 7002908 ECSE_4523 Escherichia coli SE11 putative transport protein YP_002295798.1 4719083 R 409438 CDS YP_002295799.1 209921715 7002909 complement(4720579..4720716) 1 NC_011415.1 hypothetical protein 4720716 7002909 ECSE_4524 Escherichia coli SE11 hypothetical protein YP_002295799.1 4720579 R 409438 CDS YP_002295800.1 209921716 7002910 complement(4720749..4721387) 1 NC_011415.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 4721387 7002910 ECSE_4525 Escherichia coli SE11 methionine sulfoxide reductase A YP_002295800.1 4720749 R 409438 CDS YP_002295801.1 209921717 7002911 4721593..4723326 1 NC_011415.1 hypothetical protein 4723326 7002911 ECSE_4526 Escherichia coli SE11 hypothetical protein YP_002295801.1 4721593 D 409438 CDS YP_002295802.1 209921718 7002912 4723323..4727102 1 NC_011415.1 hypothetical protein 4727102 7002912 ECSE_4527 Escherichia coli SE11 hypothetical protein YP_002295802.1 4723323 D 409438 CDS YP_002295803.1 209921719 7002913 4727105..4727446 1 NC_011415.1 hypothetical protein 4727446 7002913 ECSE_4528 Escherichia coli SE11 hypothetical protein YP_002295803.1 4727105 D 409438 CDS YP_002295804.1 209921720 7002914 4727658..4727909 1 NC_011415.1 part of the toxin-antitoxin ChpB-ChpS system; antitoxin ChpS 4727909 7002914 ECSE_4529 Escherichia coli SE11 antitoxin ChpS YP_002295804.1 4727658 D 409438 CDS YP_002295805.1 209921721 7002915 4727903..4728253 1 NC_011415.1 toxin of the ChpB-ChpS toxin-antitoxin system; toxin ChpB 4728253 7002915 ECSE_4530 Escherichia coli SE11 toxin ChpB YP_002295805.1 4727903 D 409438 CDS YP_002295806.1 209921722 7002916 complement(4728333..4728863) 1 NC_011415.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4728863 7002916 ECSE_4531 Escherichia coli SE11 inorganic pyrophosphatase YP_002295806.1 4728333 R 409438 CDS YP_002295807.1 209921723 7002917 complement(4728875..4729000) 1 NC_011415.1 hypothetical protein 4729000 7002917 ECSE_4532 Escherichia coli SE11 hypothetical protein YP_002295807.1 4728875 R 409438 CDS YP_002295808.1 209921724 7002918 4729173..4730129 1 NC_011415.1 sugar ABC transporter substrate binding component 4730129 7002918 ECSE_4533 Escherichia coli SE11 sugar ABC transporter substrate binding component YP_002295808.1 4729173 D 409438 CDS YP_002295809.1 209921725 7002919 4730269..4731771 1 NC_011415.1 sugar ABC transporter ATP-binding protein 4731771 7002919 ECSE_4534 Escherichia coli SE11 sugar ABC transporter ATP-binding protein YP_002295809.1 4730269 D 409438 CDS YP_002295810.1 209921726 7002920 4731782..4732807 1 NC_011415.1 sugar ABC transporter permease 4732807 7002920 ECSE_4535 Escherichia coli SE11 sugar ABC transporter permease YP_002295810.1 4731782 D 409438 CDS YP_002295811.1 209921727 7002921 4732794..4733789 1 NC_011415.1 membrane component of a putative sugar ABC transporter system; inner membrane ABC transporter permease YjfF 4733789 7002921 ECSE_4536 Escherichia coli SE11 inner membrane ABC transporter permease YjfF YP_002295811.1 4732794 D 409438 CDS YP_002295812.1 209921728 7002922 complement(4733822..4734820) 1 NC_011415.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 4734820 7002922 ECSE_4537 Escherichia coli SE11 fructose-1,6-bisphosphatase YP_002295812.1 4733822 R 409438 CDS YP_002295813.1 209921729 7002923 4734996..4736369 1 NC_011415.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4736369 7002923 ECSE_4538 Escherichia coli SE11 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002295813.1 4734996 D 409438 CDS YP_002295814.1 209921730 7002924 complement(4736525..4737076) 1 NC_011415.1 hypothetical protein 4737076 7002924 ECSE_4539 Escherichia coli SE11 hypothetical protein YP_002295814.1 4736525 R 409438 CDS YP_002295815.1 209921731 7002925 4737170..4738522 1 NC_011415.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; peptidase PmbA 4738522 7002925 ECSE_4540 Escherichia coli SE11 peptidase PmbA YP_002295815.1 4737170 D 409438 CDS YP_002295816.1 209921732 7002926 4738705..4739091 1 NC_011415.1 cytochrome b562 4739091 7002926 ECSE_4541 Escherichia coli SE11 cytochrome b562 YP_002295816.1 4738705 D 409438 CDS YP_002295817.1 209921733 7002927 complement(4739136..4739600) 1 NC_011415.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 4739600 nrdG 7002927 nrdG Escherichia coli SE11 anaerobic ribonucleotide reductase-activating protein YP_002295817.1 4739136 R 409438 CDS YP_002295818.1 209921734 7002928 complement(4739759..4741897) 1 NC_011415.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 4741897 7002928 ECSE_4543 Escherichia coli SE11 anaerobic ribonucleoside triphosphate reductase YP_002295818.1 4739759 R 409438 CDS YP_002295819.1 209921735 7002929 complement(4742291..4743946) 1 NC_011415.1 trehalose-6-phosphate hydrolase 4743946 7002929 ECSE_4544 Escherichia coli SE11 trehalose-6-phosphate hydrolase YP_002295819.1 4742291 R 409438 CDS YP_002295820.1 209921736 7002930 complement(4743996..4745417) 1 NC_011415.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC 4745417 7002930 ECSE_4545 Escherichia coli SE11 PTS system trehalose(maltose)-specific transporter subunits IIBC YP_002295820.1 4743996 R 409438 CDS YP_002295821.1 209921737 7002931 complement(4745536..4746483) 1 NC_011415.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon; trehalose repressor 4746483 treR 7002931 treR Escherichia coli SE11 trehalose repressor YP_002295821.1 4745536 R 409438 CDS YP_002295822.1 209921738 7002932 4746533..4746721 1 NC_011415.1 hypothetical protein 4746721 7002932 ECSE_4547 Escherichia coli SE11 hypothetical protein YP_002295822.1 4746533 D 409438 CDS YP_002295823.1 209921739 7002933 4746862..4749558 1 NC_011415.1 P-type ATPase involved in magnesium influx; magnesium-transporting ATPase MgtA 4749558 7002933 ECSE_4548 Escherichia coli SE11 magnesium-transporting ATPase MgtA YP_002295823.1 4746862 D 409438 CDS YP_002295824.1 209921740 7002934 complement(4749603..4750058) 1 NC_011415.1 hypothetical protein 4750058 7002934 ECSE_4549 Escherichia coli SE11 hypothetical protein YP_002295824.1 4749603 R 409438 CDS YP_002295825.1 209921741 7002935 complement(4750124..4750549) 1 NC_011415.1 hypothetical protein 4750549 7002935 ECSE_4550 Escherichia coli SE11 hypothetical protein YP_002295825.1 4750124 R 409438 CDS YP_002295826.1 209921742 7002936 complement(4750583..4751044) 1 NC_011415.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4751044 7002936 ECSE_4551 Escherichia coli SE11 aspartate carbamoyltransferase regulatory subunit YP_002295826.1 4750583 R 409438 CDS YP_002295827.1 209921743 7002937 complement(4751057..4751992) 1 NC_011415.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4751992 pyrB 7002937 pyrB Escherichia coli SE11 aspartate carbamoyltransferase catalytic subunit YP_002295827.1 4751057 R 409438 CDS YP_002295828.1 209921744 7002938 complement(4751996..4752130) 1 NC_011415.1 pyrBI operon leader peptide 4752130 7002938 ECSE_4553 Escherichia coli SE11 pyrBI operon leader peptide YP_002295828.1 4751996 R 409438 CDS YP_002295829.1 209921745 7002939 complement(4752411..4752806) 1 NC_011415.1 hypothetical protein 4752806 7002939 ECSE_4554 Escherichia coli SE11 hypothetical protein YP_002295829.1 4752411 R 409438 CDS YP_002295830.1 209921746 7002940 complement(4752937..4753650) 1 NC_011415.1 oxidoreductase 4753650 7002940 ECSE_4555 Escherichia coli SE11 oxidoreductase YP_002295830.1 4752937 R 409438 CDS YP_002295831.1 209921747 7002941 4753721..4754314 1 NC_011415.1 putative transcriptional regulator 4754314 7002941 ECSE_4556 Escherichia coli SE11 putative transcriptional regulator YP_002295831.1 4753721 D 409438 CDS YP_002295832.1 209921748 7002942 4754459..4754911 1 NC_011415.1 hypothetical protein 4754911 7002942 ECSE_4557 Escherichia coli SE11 hypothetical protein YP_002295832.1 4754459 D 409438 CDS YP_002295833.1 209921749 7002943 4755034..4756206 1 NC_011415.1 hypothetical protein 4756206 7002943 ECSE_4558 Escherichia coli SE11 hypothetical protein YP_002295833.1 4755034 D 409438 CDS YP_002295834.1 209921750 7002944 4756203..4756700 1 NC_011415.1 hypothetical protein 4756700 7002944 ECSE_4559 Escherichia coli SE11 hypothetical protein YP_002295834.1 4756203 D 409438 CDS YP_002295835.1 209921751 7002945 complement(4756754..4757767) 1 NC_011415.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.; ornithine carbamoyltransferase subunit I 4757767 7002945 ECSE_4560 Escherichia coli SE11 ornithine carbamoyltransferase subunit I YP_002295835.1 4756754 R 409438 CDS YP_002295836.1 209921752 7002946 4757929..4758345 1 NC_011415.1 hypothetical protein 4758345 7002946 ECSE_4561 Escherichia coli SE11 hypothetical protein YP_002295836.1 4757929 D 409438 CDS YP_002295837.1 209921753 7002947 complement(4758391..4758894) 1 NC_011415.1 hypothetical protein 4758894 7002947 ECSE_4562 Escherichia coli SE11 hypothetical protein YP_002295837.1 4758391 R 409438 CDS YP_002295838.1 209921754 7002948 4759087..4760283 1 NC_011415.1 hypothetical protein 4760283 7002948 ECSE_4563 Escherichia coli SE11 hypothetical protein YP_002295838.1 4759087 D 409438 CDS YP_002295839.1 209921755 7002949 complement(4760339..4763194) 1 NC_011415.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4763194 valS 7002949 valS Escherichia coli SE11 valyl-tRNA synthetase YP_002295839.1 4760339 R 409438 CDS YP_002295840.1 209921756 7002950 complement(4763194..4763637) 1 NC_011415.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 4763637 7002950 ECSE_4565 Escherichia coli SE11 DNA polymerase III subunit chi YP_002295840.1 4763194 R 409438 CDS YP_002295841.1 209921757 7002951 complement(4763771..4765282) 1 NC_011415.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4765282 7002951 ECSE_4566 Escherichia coli SE11 leucyl aminopeptidase YP_002295841.1 4763771 R 409438 CDS YP_002295842.1 209921758 7002952 4765549..4766649 1 NC_011415.1 hypothetical protein 4766649 7002952 ECSE_4567 Escherichia coli SE11 hypothetical protein YP_002295842.1 4765549 D 409438 CDS YP_002295843.1 209921759 7002953 4766649..4767731 1 NC_011415.1 hypothetical protein 4767731 7002953 ECSE_4568 Escherichia coli SE11 hypothetical protein YP_002295843.1 4766649 D 409438 CDS YP_002295844.1 209921760 7002954 complement(4767892..4769394) 1 NC_011415.1 hypothetical protein 4769394 7002954 ECSE_4569 Escherichia coli SE11 hypothetical protein YP_002295844.1 4767892 R 409438 CDS YP_002295845.1 209921761 7003120 4770158..4770313 1 NC_011415.1 putative partial phage integrase 4770313 7003120 ECSE_4570 Escherichia coli SE11 putative partial phage integrase YP_002295845.1 4770158 D 409438 CDS YP_002295846.1 209921762 7002956 4770514..4772163 1 NC_011415.1 hypothetical protein 4772163 7002956 ECSE_4571 Escherichia coli SE11 hypothetical protein YP_002295846.1 4770514 D 409438 CDS YP_002295847.1 209921763 7002957 4772168..4773490 1 NC_011415.1 hypothetical protein 4773490 7002957 ECSE_4572 Escherichia coli SE11 hypothetical protein YP_002295847.1 4772168 D 409438 CDS YP_002295848.1 209921764 7002958 4773450..4778552 1 NC_011415.1 hypothetical protein 4778552 7002958 ECSE_4573 Escherichia coli SE11 hypothetical protein YP_002295848.1 4773450 D 409438 CDS YP_002295849.1 209921765 7002959 4778549..4779370 1 NC_011415.1 putative restriction endonuclease 4779370 7002959 ECSE_4574 Escherichia coli SE11 putative restriction endonuclease YP_002295849.1 4778549 D 409438 CDS YP_002295850.1 209921766 7002960 complement(4779405..4780025) 1 NC_011415.1 hypothetical protein 4780025 7002960 ECSE_4575 Escherichia coli SE11 hypothetical protein YP_002295850.1 4779405 R 409438 CDS YP_002295851.1 209921767 7002961 complement(4780075..4780428) 1 NC_011415.1 hypothetical protein 4780428 7002961 ECSE_4576 Escherichia coli SE11 hypothetical protein YP_002295851.1 4780075 R 409438 CDS YP_002295852.1 209921768 7002962 complement(4780428..4782473) 1 NC_011415.1 hypothetical protein 4782473 7002962 ECSE_4577 Escherichia coli SE11 hypothetical protein YP_002295852.1 4780428 R 409438 CDS YP_002295853.1 209921769 7002963 complement(4782427..4784061) 1 NC_011415.1 hypothetical protein 4784061 7002963 ECSE_4578 Escherichia coli SE11 hypothetical protein YP_002295853.1 4782427 R 409438 CDS YP_002295854.1 209921770 7002964 complement(4784058..4785143) 1 NC_011415.1 hypothetical protein 4785143 7002964 ECSE_4579 Escherichia coli SE11 hypothetical protein YP_002295854.1 4784058 R 409438 CDS YP_002295855.1 209921771 7002965 4785412..4785744 1 NC_011415.1 transposase 4785744 7002965 ECSE_4580 Escherichia coli SE11 transposase YP_002295855.1 4785412 D 409438 CDS YP_002295856.1 209921772 7002966 4786065..4786625 1 NC_011415.1 transposase 4786625 7002966 ECSE_4581 Escherichia coli SE11 transposase YP_002295856.1 4786065 D 409438 CDS YP_002295857.1 209921773 7002967 complement(4786622..4787728) 1 NC_011415.1 N-acetylneuraminic acid mutarotase 4787728 7002967 ECSE_4582 Escherichia coli SE11 N-acetylneuraminic acid mutarotase YP_002295857.1 4786622 R 409438 CDS YP_002295858.1 209921774 7002968 complement(4787748..4788464) 1 NC_011415.1 hypothetical protein 4788464 7002968 ECSE_4583 Escherichia coli SE11 hypothetical protein YP_002295858.1 4787748 R 409438 CDS YP_002295859.1 209921775 7002969 complement(4789129..4789266) 1 NC_011415.1 hypothetical protein 4789266 7002969 ECSE_4584 Escherichia coli SE11 hypothetical protein YP_002295859.1 4789129 R 409438 CDS YP_002295860.1 209921776 7002970 4789919..4790521 1 NC_011415.1 inversion of on/off regulator of fimA; tyrosine recombinase 4790521 7002970 ECSE_4585 Escherichia coli SE11 tyrosine recombinase YP_002295860.1 4789919 D 409438 CDS YP_002295861.1 209921777 7002971 4790999..4791595 1 NC_011415.1 inversion of on/off regulator of fimA; tyrosine recombinase 4791595 7002971 ECSE_4586 Escherichia coli SE11 tyrosine recombinase YP_002295861.1 4790999 D 409438 CDS YP_002295862.1 209921778 7002972 4792075..4792623 1 NC_011415.1 type-1 fimbrial major subunit FimA 4792623 7002972 ECSE_4587 Escherichia coli SE11 type-1 fimbrial major subunit FimA YP_002295862.1 4792075 D 409438 CDS YP_002295863.1 209921779 7002973 4792721..4793227 1 NC_011415.1 type-1 fimbrial protein FimI 4793227 7002973 ECSE_4588 Escherichia coli SE11 type-1 fimbrial protein FimI YP_002295863.1 4792721 D 409438 CDS YP_002295864.1 209921780 7002974 4793264..4793989 1 NC_011415.1 type-1 fimbrial chaperone FimC 4793989 7002974 ECSE_4589 Escherichia coli SE11 type-1 fimbrial chaperone FimC YP_002295864.1 4793264 D 409438 CDS YP_002295865.1 209921781 7002975 4794056..4796692 1 NC_011415.1 type-1 fimbrial usher protein FimD 4796692 7002975 ECSE_4590 Escherichia coli SE11 type-1 fimbrial usher protein FimD YP_002295865.1 4794056 D 409438 CDS YP_002295866.1 209921782 7002976 4796702..4797232 1 NC_011415.1 type-1 fimbrial minor subunit FimF 4797232 7002976 ECSE_4591 Escherichia coli SE11 type-1 fimbrial minor subunit FimF YP_002295866.1 4796702 D 409438 CDS YP_002295867.1 209921783 7002977 4797245..4797748 1 NC_011415.1 type-1 fimbrial minor subunit FimG 4797748 7002977 ECSE_4592 Escherichia coli SE11 type-1 fimbrial minor subunit FimG YP_002295867.1 4797245 D 409438 CDS YP_002295868.1 209921784 7002978 4797768..4798670 1 NC_011415.1 type-1 fimbrial minor subunit FimH 4798670 7002978 ECSE_4593 Escherichia coli SE11 type-1 fimbrial minor subunit FimH YP_002295868.1 4797768 D 409438 CDS YP_002295869.1 209921785 7002979 complement(4798914..4800257) 1 NC_011415.1 fructuronate transporter 4800257 7002979 ECSE_4594 Escherichia coli SE11 fructuronate transporter YP_002295869.1 4798914 R 409438 CDS YP_002295870.1 209921786 7002980 4800597..4801781 1 NC_011415.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 4801781 7002980 ECSE_4595 Escherichia coli SE11 mannonate dehydratase YP_002295870.1 4800597 D 409438 CDS YP_002295871.1 209921787 7002981 4801862..4803322 1 NC_011415.1 mannonate oxidoreductase 4803322 7002981 ECSE_4596 Escherichia coli SE11 mannonate oxidoreductase YP_002295871.1 4801862 D 409438 CDS YP_002295872.1 209921788 7002982 4803537..4804310 1 NC_011415.1 regulates the expression of uxuBA; DNA-binding transcriptional repressor UxuR 4804310 7002982 ECSE_4597 Escherichia coli SE11 DNA-binding transcriptional repressor UxuR YP_002295872.1 4803537 D 409438 CDS YP_002295873.1 209921789 7002983 complement(4804451..4805281) 1 NC_011415.1 hypothetical protein 4805281 7002983 ECSE_4598 Escherichia coli SE11 hypothetical protein YP_002295873.1 4804451 R 409438 CDS YP_002295874.1 209921790 7002984 4805615..4805758 1 NC_011415.1 hypothetical protein 4805758 7002984 ECSE_4599 Escherichia coli SE11 hypothetical protein YP_002295874.1 4805615 D 409438 CDS YP_002295875.1 209921791 7002985 4805957..4806346 1 NC_011415.1 inhibitor of RssB activity in response to DNA damage; blocks degradation of stationary phase sigma factor RpoS; DNA replication/recombination/repair protein 4806346 iraD 7002985 iraD Escherichia coli SE11 DNA replication/recombination/repair protein YP_002295875.1 4805957 D 409438 CDS YP_002295876.1 209921792 7002986 complement(4806339..4807250) 1 NC_011415.1 putative DNA-binding transcriptional regulator 4807250 7002986 ECSE_4601 Escherichia coli SE11 putative DNA-binding transcriptional regulator YP_002295876.1 4806339 R 409438 CDS YP_002295877.1 209921793 7002987 complement(4807315..4808487) 1 NC_011415.1 isoaspartyl dipeptidase 4808487 7002987 ECSE_4602 Escherichia coli SE11 isoaspartyl dipeptidase YP_002295877.1 4807315 R 409438 CDS YP_002295878.1 209921794 7002988 complement(4808500..4808961) 1 NC_011415.1 hypothetical protein 4808961 7002988 ECSE_4603 Escherichia coli SE11 hypothetical protein YP_002295878.1 4808500 R 409438 CDS YP_002295879.1 209921795 7002989 complement(4808958..4809653) 1 NC_011415.1 hypothetical protein 4809653 7002989 ECSE_4604 Escherichia coli SE11 hypothetical protein YP_002295879.1 4808958 R 409438 CDS YP_002295880.1 209921796 7002990 4809653..4809862 1 NC_011415.1 hypothetical protein 4809862 7002990 ECSE_4605 Escherichia coli SE11 hypothetical protein YP_002295880.1 4809653 D 409438 CDS YP_002295881.1 209921797 7002991 4809891..4810445 1 NC_011415.1 in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate; functions in tRNA splicing; the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown; RNA 2'-phosphotransferase-like protein 4810445 7002991 ECSE_4606 Escherichia coli SE11 RNA 2'-phosphotransferase-like protein YP_002295881.1 4809891 D 409438 CDS YP_002295882.1 209921798 7002992 complement(4810458..4811636) 1 NC_011415.1 putative transport protein 4811636 7002992 ECSE_4607 Escherichia coli SE11 putative transport protein YP_002295882.1 4810458 R 409438 CDS YP_002295883.1 209921799 7002993 complement(4811704..4812675) 1 NC_011415.1 hypothetical protein 4812675 7002993 ECSE_4608 Escherichia coli SE11 hypothetical protein YP_002295883.1 4811704 R 409438 CDS YP_002295884.1 209921800 7002994 complement(4812883..4813656) 1 NC_011415.1 hypothetical protein 4813656 7002994 ECSE_4609 Escherichia coli SE11 hypothetical protein YP_002295884.1 4812883 R 409438 CDS YP_002295885.1 209921801 7002995 complement(4813660..4814811) 1 NC_011415.1 hypothetical protein 4814811 7002995 ECSE_4610 Escherichia coli SE11 hypothetical protein YP_002295885.1 4813660 R 409438 CDS YP_002295886.1 209921802 7002996 complement(4814927..4816207) 1 NC_011415.1 hypothetical protein 4816207 7002996 ECSE_4611 Escherichia coli SE11 hypothetical protein YP_002295886.1 4814927 R 409438 CDS YP_002295887.1 209921803 7002997 complement(4816248..4817480) 1 NC_011415.1 multidrug transport protein 4817480 7002997 ECSE_4612 Escherichia coli SE11 multidrug transport protein YP_002295887.1 4816248 R 409438 CDS YP_002295888.1 209921804 7002998 4817947..4818891 1 NC_011415.1 hypothetical protein 4818891 7002998 ECSE_4613 Escherichia coli SE11 hypothetical protein YP_002295888.1 4817947 D 409438 CDS YP_002295889.1 209921805 7002999 complement(4819133..4820545) 1 NC_011415.1 putative transcriptional regulator 4820545 7002999 ECSE_4614 Escherichia coli SE11 putative transcriptional regulator YP_002295889.1 4819133 R 409438 CDS YP_002295890.1 209921806 7003000 4820722..4820886 1 NC_011415.1 hypothetical protein 4820886 7003000 ECSE_4615 Escherichia coli SE11 hypothetical protein YP_002295890.1 4820722 D 409438 CDS YP_002295891.1 209921807 7003001 4821238..4823778 1 NC_011415.1 penicillin G acylase 4823778 7003001 ECSE_4616 Escherichia coli SE11 penicillin G acylase YP_002295891.1 4821238 D 409438 CDS YP_002295892.1 209921808 7003002 complement(4823856..4824812) 1 NC_011415.1 putative GTP-binding protein YjiA 4824812 7003002 ECSE_4617 Escherichia coli SE11 putative GTP-binding protein YjiA YP_002295892.1 4823856 R 409438 CDS YP_002295893.1 209921809 7003003 complement(4824823..4825026) 1 NC_011415.1 hypothetical protein 4825026 7003003 ECSE_4618 Escherichia coli SE11 hypothetical protein YP_002295893.1 4824823 R 409438 CDS YP_002295894.1 209921810 7003004 complement(4825076..4827241) 1 NC_011415.1 putative carbon starvation protein 4827241 7003004 ECSE_4619 Escherichia coli SE11 putative carbon starvation protein YP_002295894.1 4825076 R 409438 CDS YP_002295895.1 209921811 7003005 complement(4827619..4828131) 1 NC_011415.1 4-hydroxyphenylacetate 3-monooxygenase small subunit 4828131 7003005 ECSE_4620 Escherichia coli SE11 4-hydroxyphenylacetate 3-monooxygenase small subunit YP_002295895.1 4827619 R 409438 CDS YP_002295896.1 209921812 7003006 complement(4828149..4829711) 1 NC_011415.1 4-hydroxyphenylacetate 3-monooxygenase large subunit 4829711 7003006 ECSE_4621 Escherichia coli SE11 4-hydroxyphenylacetate 3-monooxygenase large subunit YP_002295896.1 4828149 R 409438 CDS YP_002295897.1 209921813 7003007 complement(4829962..4830852) 1 NC_011415.1 4-hydroxyphenylacetate 3-monooxygenase operon regulator 4830852 7003007 ECSE_4622 Escherichia coli SE11 4-hydroxyphenylacetate 3-monooxygenase operon regulator YP_002295897.1 4829962 R 409438 CDS YP_002295898.1 209921814 7003008 complement(4830862..4832238) 1 NC_011415.1 putative 4-hydroxyphenylacetate transport protein 4832238 7003008 ECSE_4623 Escherichia coli SE11 putative 4-hydroxyphenylacetate transport protein YP_002295898.1 4830862 R 409438 CDS YP_002295899.1 209921815 7003009 complement(4832361..4833149) 1 NC_011415.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 4833149 7003009 ECSE_4624 Escherichia coli SE11 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_002295899.1 4832361 R 409438 CDS YP_002295900.1 209921816 7003010 complement(4833160..4833963) 1 NC_011415.1 2-oxo-hept-3-ene-1,7-dioate hydratase 4833963 7003010 ECSE_4625 Escherichia coli SE11 2-oxo-hept-3-ene-1,7-dioate hydratase YP_002295900.1 4833160 R 409438 CDS YP_002295901.1 209921817 7003011 complement(4834074..4834454) 1 NC_011415.1 5-carboxymethyl-2-hydroxymuconate isomerase 4834454 7003011 ECSE_4626 Escherichia coli SE11 5-carboxymethyl-2-hydroxymuconate isomerase YP_002295901.1 4834074 R 409438 CDS YP_002295902.1 209921818 7003012 complement(4834464..4835315) 1 NC_011415.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase 4835315 7003012 ECSE_4627 Escherichia coli SE11 3,4-dihydroxyphenylacetate 2,3-dioxygenase YP_002295902.1 4834464 R 409438 CDS YP_002295903.1 209921819 7003013 complement(4835317..4836783) 1 NC_011415.1 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase 4836783 7003013 ECSE_4628 Escherichia coli SE11 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase YP_002295903.1 4835317 R 409438 CDS YP_002295904.1 209921820 7003014 complement(4836780..4838069) 1 NC_011415.1 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase 4838069 7003014 ECSE_4629 Escherichia coli SE11 5-oxo-1,2,5-tricarboxilic-3-penten acid decarboxilase/isomerase YP_002295904.1 4836780 R 409438 CDS YP_002295905.1 209921821 7003015 4838341..4838787 1 NC_011415.1 homoprotocatechuate degradative operon repressor 4838787 7003015 ECSE_4630 Escherichia coli SE11 homoprotocatechuate degradative operon repressor YP_002295905.1 4838341 D 409438 CDS YP_002295906.1 209921822 7003016 4838906..4840570 1 NC_011415.1 methyl-accepting chemotaxis protein I 4840570 7003016 ECSE_4631 Escherichia coli SE11 methyl-accepting chemotaxis protein I YP_002295906.1 4838906 D 409438 CDS YP_002295907.1 209921823 7003017 complement(4840619..4841980) 1 NC_011415.1 putative transport protein 4841980 7003017 ECSE_4632 Escherichia coli SE11 putative transport protein YP_002295907.1 4840619 R 409438 CDS YP_002295908.1 209921824 7003018 complement(4842195..4843109) 1 NC_011415.1 hypothetical protein 4843109 7003018 ECSE_4633 Escherichia coli SE11 hypothetical protein YP_002295908.1 4842195 R 409438 CDS YP_002295909.1 209921825 7003019 4843248..4844270 1 NC_011415.1 putative dehydrogenase 4844270 7003019 ECSE_4634 Escherichia coli SE11 putative dehydrogenase YP_002295909.1 4843248 D 409438 CDS YP_002295910.1 209921826 7003020 complement(4844409..4846700) 1 NC_011415.1 catalyzes the transfer of phosphoglycerol to the glucan backbone; phosphoglycerol transferase I 4846700 7003020 ECSE_4635 Escherichia coli SE11 phosphoglycerol transferase I YP_002295910.1 4844409 R 409438 CDS YP_002295911.1 209921827 7003021 complement(4846954..4847451) 1 NC_011415.1 hypothetical protein 4847451 7003021 ECSE_4636 Escherichia coli SE11 hypothetical protein YP_002295911.1 4846954 R 409438 CDS YP_002295912.1 209921828 7003022 complement(4847497..4848234) 1 NC_011415.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4848234 7003022 ECSE_4637 Escherichia coli SE11 DNA replication protein DnaC YP_002295912.1 4847497 R 409438 CDS YP_002295913.1 209921829 7003023 complement(4848237..4848776) 1 NC_011415.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N'; primosomal protein DnaI 4848776 7003023 ECSE_4638 Escherichia coli SE11 primosomal protein DnaI YP_002295913.1 4848237 R 409438 CDS YP_002295914.1 209921830 7003024 complement(4848884..4849357) 1 NC_011415.1 hypothetical protein 4849357 7003024 ECSE_4639 Escherichia coli SE11 hypothetical protein YP_002295914.1 4848884 R 409438 CDS YP_002295915.1 209921831 7003025 complement(4849348..4850181) 1 NC_011415.1 hypothetical protein 4850181 7003025 ECSE_4640 Escherichia coli SE11 hypothetical protein YP_002295915.1 4849348 R 409438 CDS YP_002295916.1 209921832 7003026 4850737..4851462 1 NC_011415.1 hypothetical protein 4851462 7003026 ECSE_4641 Escherichia coli SE11 hypothetical protein YP_002295916.1 4850737 D 409438 CDS YP_002295917.1 209921833 7003027 4851474..4852097 1 NC_011415.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin; DNA-binding transcriptional activator BglJ 4852097 7003027 ECSE_4642 Escherichia coli SE11 DNA-binding transcriptional activator BglJ YP_002295917.1 4851474 D 409438 CDS YP_002295918.1 209921834 7003028 complement(4852135..4852923) 1 NC_011415.1 ferric iron reductase involved in ferric hydroximate transport 4852923 7003028 ECSE_4643 Escherichia coli SE11 ferric iron reductase involved in ferric hydroximate transport YP_002295918.1 4852135 R 409438 CDS YP_002295919.1 209921835 7003029 4853064..4853300 1 NC_011415.1 hypothetical protein 4853300 7003029 ECSE_4644 Escherichia coli SE11 hypothetical protein YP_002295919.1 4853064 D 409438 CDS YP_002295920.1 209921836 7003121 complement(4853962..4854993) 1 NC_011415.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 4854993 rsmC 7003121 rsmC Escherichia coli SE11 16S ribosomal RNA m2G1207 methyltransferase YP_002295920.1 4853962 R 409438 CDS YP_002295921.1 209921837 7003031 4855096..4855509 1 NC_011415.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 4855509 7003031 ECSE_4646 Escherichia coli SE11 DNA polymerase III subunit psi YP_002295921.1 4855096 D 409438 CDS YP_002295922.1 209921838 7003032 4855478..4855924 1 NC_011415.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 4855924 rimI 7003032 rimI Escherichia coli SE11 ribosomal-protein-alanine N-acetyltransferase YP_002295922.1 4855478 D 409438 CDS YP_002295923.1 209921839 7003033 4855939..4856616 1 NC_011415.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily; nucleotidase 4856616 7003033 ECSE_4648 Escherichia coli SE11 nucleotidase YP_002295923.1 4855939 D 409438 CDS YP_002295924.1 209921840 7003034 4856707..4858296 1 NC_011415.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4858296 prfC 7003034 prfC Escherichia coli SE11 peptide chain release factor 3 YP_002295924.1 4856707 D 409438 CDS YP_002295925.1 209921841 7003035 4858689..4859294 1 NC_011415.1 periplasmic protein 4859294 7003035 ECSE_4650 Escherichia coli SE11 periplasmic protein YP_002295925.1 4858689 D 409438 CDS YP_002295926.1 209921842 7003036 4859421..4859582 1 NC_011415.1 hypothetical protein 4859582 7003036 ECSE_4651 Escherichia coli SE11 hypothetical protein YP_002295926.1 4859421 D 409438 CDS YP_002295927.1 209921843 7003037 4859704..4860777 1 NC_011415.1 hypothetical protein 4860777 7003037 ECSE_4652 Escherichia coli SE11 hypothetical protein YP_002295927.1 4859704 D 409438 CDS YP_002295928.1 209921844 7003038 4860774..4861556 1 NC_011415.1 putative deoxyribonuclease YjjV 4861556 7003038 ECSE_4653 Escherichia coli SE11 putative deoxyribonuclease YjjV YP_002295928.1 4860774 D 409438 CDS YP_002295929.1 209921845 7003039 complement(4861669..4862532) 1 NC_011415.1 hypothetical protein 4862532 7003039 ECSE_4654 Escherichia coli SE11 hypothetical protein YP_002295929.1 4861669 R 409438 CDS YP_002295930.1 209921846 7003040 complement(4862504..4864054) 1 NC_011415.1 hypothetical protein 4864054 7003040 ECSE_4655 Escherichia coli SE11 hypothetical protein YP_002295930.1 4862504 R 409438 CDS YP_002295931.1 209921847 7003041 4864312..4865091 1 NC_011415.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 4865091 7003041 ECSE_4656 Escherichia coli SE11 deoxyribose-phosphate aldolase YP_002295931.1 4864312 D 409438 CDS YP_002295932.1 209921848 7003042 4865218..4866540 1 NC_011415.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate; thymidine phosphorylase 4866540 deoA 7003042 deoA Escherichia coli SE11 thymidine phosphorylase YP_002295932.1 4865218 D 409438 CDS YP_002295933.1 209921849 7003043 4866592..4867815 1 NC_011415.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 4867815 7003043 ECSE_4658 Escherichia coli SE11 phosphopentomutase YP_002295933.1 4866592 D 409438 CDS YP_002295934.1 209921850 7003044 4867895..4868614 1 NC_011415.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4868614 deoD 7003044 deoD Escherichia coli SE11 purine nucleoside phosphorylase YP_002295934.1 4867895 D 409438 CDS YP_002295935.1 209921851 7003045 complement(4868889..4869038) 1 NC_011415.1 hypothetical protein 4869038 7003045 ECSE_4660 Escherichia coli SE11 hypothetical protein YP_002295935.1 4868889 R 409438 CDS YP_002295936.1 209921852 7003046 complement(4869070..4870086) 1 NC_011415.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins; lipoate-protein ligase A 4870086 lplA 7003046 lplA Escherichia coli SE11 lipoate-protein ligase A YP_002295936.1 4869070 R 409438 CDS YP_002295937.1 209921853 7003047 complement(4870114..4870758) 1 NC_011415.1 hypothetical protein 4870758 7003047 ECSE_4662 Escherichia coli SE11 hypothetical protein YP_002295937.1 4870114 R 409438 CDS YP_002295938.1 209921854 7003048 4870864..4871832 1 NC_011415.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 4871832 serB 7003048 serB Escherichia coli SE11 phosphoserine phosphatase YP_002295938.1 4870864 D 409438 CDS YP_002295939.1 209921855 7003049 4871881..4873263 1 NC_011415.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4873263 7003049 ECSE_4664 Escherichia coli SE11 DNA repair protein RadA YP_002295939.1 4871881 D 409438 CDS YP_002295940.1 209921856 7003050 4873284..4874516 1 NC_011415.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 4874516 7003050 ECSE_4665 Escherichia coli SE11 nicotinamide-nucleotide adenylyltransferase YP_002295940.1 4873284 D 409438 CDS YP_002295941.1 209921857 7003051 4874567..4874716 1 NC_011415.1 hypothetical protein 4874716 7003051 ECSE_4666 Escherichia coli SE11 hypothetical protein YP_002295941.1 4874567 D 409438 CDS YP_002295942.1 209921858 7003052 complement(4874823..4876490) 1 NC_011415.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 4876490 7003052 ECSE_4667 Escherichia coli SE11 putative ABC transporter ATP-binding protein YP_002295942.1 4874823 R 409438 CDS YP_002295943.1 209921859 7003053 4876734..4878638 1 NC_011415.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan; lytic murein transglycosylase 4878638 7003053 ECSE_4668 Escherichia coli SE11 lytic murein transglycosylase YP_002295943.1 4876734 D 409438 CDS YP_002295944.1 209921860 7003054 4878728..4879054 1 NC_011415.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 4879054 7003054 ECSE_4669 Escherichia coli SE11 Trp operon repressor YP_002295944.1 4878728 D 409438 CDS YP_002295945.1 209921861 7003055 complement(4879096..4879608) 1 NC_011415.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog; NTPase 4879608 7003055 ECSE_4670 Escherichia coli SE11 NTPase YP_002295945.1 4879096 R 409438 CDS YP_002295946.1 209921862 7003056 4879660..4880307 1 NC_011415.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate; phosphoglycerate mutase 4880307 7003056 ECSE_4671 Escherichia coli SE11 phosphoglycerate mutase YP_002295946.1 4879660 D 409438 CDS YP_002295947.1 209921863 7003057 complement(4880304..4881173) 1 NC_011415.1 putative transcriptional regulator 4881173 7003057 ECSE_4672 Escherichia coli SE11 putative transcriptional regulator YP_002295947.1 4880304 R 409438 CDS YP_002295948.1 209921864 7003058 4881384..4881857 1 NC_011415.1 hypothetical protein 4881857 7003058 ECSE_4673 Escherichia coli SE11 hypothetical protein YP_002295948.1 4881384 D 409438 CDS YP_002295949.1 209921865 7003059 4881870..4882559 1 NC_011415.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4882559 7003059 ECSE_4674 Escherichia coli SE11 DNA-binding response regulator CreB YP_002295949.1 4881870 D 409438 CDS YP_002295950.1 209921866 7003060 4882559..4883983 1 NC_011415.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4883983 7003060 ECSE_4675 Escherichia coli SE11 sensory histidine kinase CreC YP_002295950.1 4882559 D 409438 CDS YP_002295951.1 209921867 7003061 4884041..4885393 1 NC_011415.1 hypothetical protein 4885393 7003061 ECSE_4676 Escherichia coli SE11 hypothetical protein YP_002295951.1 4884041 D 409438 CDS YP_002295952.1 209921868 7003062 complement(4885453..4886169) 1 NC_011415.1 two-component response regulator 4886169 7003062 ECSE_4677 Escherichia coli SE11 two-component response regulator YP_002295952.1 4885453 R 409438 CDS YP_002295953.1 209921869 7003063 4886265..4886405 1 NC_011415.1 hypothetical protein 4886405 7003063 ECSE_4678 Escherichia coli SE11 hypothetical protein YP_002295953.1 4886265 D 409438 CDS YP_002295954.1 209921870 7003064 4886805..4887491 1 NC_011415.1 member of the SPOUT superfamily of methyltransferases; putative RNA methyltransferase 4887491 7003064 ECSE_4679 Escherichia coli SE11 putative RNA methyltransferase YP_002295954.1 4886805 D 409438 CDS YP_002295955.1 209921876 7003226 1..1044 1 NC_011416.1 anaerobic sulfite reductase subunit A 1044 7003226 ECSE_P3-0001 Escherichia coli SE11 anaerobic sulfite reductase subunit A YP_002295955.1 1 D 409438 CDS YP_002295956.1 209921877 7003160 1048..1866 1 NC_011416.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1866 7003160 ECSE_P3-0002 Escherichia coli SE11 anaerobic sulfite reductase subunit B YP_002295956.1 1048 D 409438 CDS YP_002295957.1 209921878 7003161 1877..2890 1 NC_011416.1 anaerobic sulfite reductase subunit C 2890 7003161 ECSE_P3-0003 Escherichia coli SE11 anaerobic sulfite reductase subunit C YP_002295957.1 1877 D 409438 CDS YP_002295958.1 209921879 7003162 complement(3692..3946) 1 NC_011416.1 putative xylanase/chitin deacetylase 3946 7003162 ECSE_P3-0004 Escherichia coli SE11 putative xylanase/chitin deacetylase YP_002295958.1 3692 R 409438 CDS YP_002295959.1 209921880 7003163 4607..5017 1 NC_011416.1 IS2 OrfA; forms an overlapping reading frame with orfB; may form a fusion protein OrfAB due to ribosomal frameshifting; both OrfA and OrfAB bind terminal inverted repeats; insertion sequence 2 OrfA protein 5017 7003163 ECSE_P3-0005 Escherichia coli SE11 insertion sequence 2 OrfA protein YP_002295959.1 4607 D 409438 CDS YP_002295960.1 209921881 7003164 4975..5766 1 NC_011416.1 truncated transposase 5766 7003164 ECSE_P3-0006 Escherichia coli SE11 truncated transposase YP_002295960.1 4975 D 409438 CDS YP_002295961.1 209921882 7003165 5699..5869 1 NC_011416.1 truncated transposase 5869 7003165 ECSE_P3-0007 Escherichia coli SE11 truncated transposase YP_002295961.1 5699 D 409438 CDS YP_002295962.1 209921883 7003166 complement(6312..7226) 1 NC_011416.1 hypothetical protein 7226 7003166 ECSE_P3-0008 Escherichia coli SE11 hypothetical protein YP_002295962.1 6312 R 409438 CDS YP_002295963.1 209921884 7003167 7758..7928 1 NC_011416.1 hypothetical protein 7928 7003167 ECSE_P3-0009 Escherichia coli SE11 hypothetical protein YP_002295963.1 7758 D 409438 CDS YP_002295964.1 209921885 7003168 8130..8291 1 NC_011416.1 hypothetical protein 8291 7003168 ECSE_P3-0010 Escherichia coli SE11 hypothetical protein YP_002295964.1 8130 D 409438 CDS YP_002295965.1 209921886 7003169 8661..9401 1 NC_011416.1 integrase 9401 7003169 ECSE_P3-0011 Escherichia coli SE11 integrase YP_002295965.1 8661 D 409438 CDS YP_002295966.1 209921887 7003170 complement(9686..10663) 1 NC_011416.1 replication protein RepA 10663 7003170 ECSE_P3-0012 Escherichia coli SE11 replication protein RepA YP_002295966.1 9686 R 409438 CDS YP_002295967.1 209921888 7003171 11454..11978 1 NC_011416.1 hypothetical protein 11978 7003171 ECSE_P3-0013 Escherichia coli SE11 hypothetical protein YP_002295967.1 11454 D 409438 CDS YP_002295968.1 209921889 7003172 12156..12692 1 NC_011416.1 truncated transposase 12692 7003172 ECSE_P3-0014 Escherichia coli SE11 truncated transposase YP_002295968.1 12156 D 409438 CDS YP_002295969.1 209921890 7003173 12692..13039 1 NC_011416.1 transposase 13039 7003173 ECSE_P3-0015 Escherichia coli SE11 transposase YP_002295969.1 12692 D 409438 CDS YP_002295970.1 209921891 7003174 13059..14420 1 NC_011416.1 truncated transposase 14420 7003174 ECSE_P3-0016 Escherichia coli SE11 truncated transposase YP_002295970.1 13059 D 409438 CDS YP_002295971.1 209921892 7003175 14411..14620 1 NC_011416.1 truncated transposase 14620 7003175 ECSE_P3-0017 Escherichia coli SE11 truncated transposase YP_002295971.1 14411 D 409438 CDS YP_002295972.1 209921893 7003176 complement(14812..15018) 1 NC_011416.1 hypothetical protein 15018 7003176 ECSE_P3-0018 Escherichia coli SE11 hypothetical protein YP_002295972.1 14812 R 409438 CDS YP_002295973.1 209921894 7003177 15972..16346 1 NC_011416.1 hypothetical protein 16346 7003177 ECSE_P3-0019 Escherichia coli SE11 hypothetical protein YP_002295973.1 15972 D 409438 CDS YP_002295974.1 209921895 7003178 16524..17201 1 NC_011416.1 hypothetical protein 17201 7003178 ECSE_P3-0020 Escherichia coli SE11 hypothetical protein YP_002295974.1 16524 D 409438 CDS YP_002295975.1 209921896 7003179 17747..18157 1 NC_011416.1 zinc resistance protein 18157 zraP 7003179 zraP Escherichia coli SE11 zinc resistance protein YP_002295975.1 17747 D 409438 CDS YP_002295976.1 209921897 7003180 18583..18831 1 NC_011416.1 hypothetical protein 18831 7003180 ECSE_P3-0022 Escherichia coli SE11 hypothetical protein YP_002295976.1 18583 D 409438 CDS YP_002295977.1 209921898 7003181 complement(18983..20443) 1 NC_011416.1 putative cation transport protein 20443 7003181 ECSE_P3-0023 Escherichia coli SE11 putative cation transport protein YP_002295977.1 18983 R 409438 CDS YP_002295978.1 209921899 7003182 20759..23035 1 NC_011416.1 thiosulfate reductase subunit A 23035 7003182 ECSE_P3-0024 Escherichia coli SE11 thiosulfate reductase subunit A YP_002295978.1 20759 D 409438 CDS YP_002295979.1 209921900 7003183 23050..23628 1 NC_011416.1 thiosulfate reductase iron-sulfur subunit 23628 7003183 ECSE_P3-0025 Escherichia coli SE11 thiosulfate reductase iron-sulfur subunit YP_002295979.1 23050 D 409438 CDS YP_002295980.1 209921901 7003184 23625..24389 1 NC_011416.1 thiosulfate reductase cytochrome b subunit 24389 7003184 ECSE_P3-0026 Escherichia coli SE11 thiosulfate reductase cytochrome b subunit YP_002295980.1 23625 D 409438 CDS YP_002295981.1 209921902 7003185 24565..24741 1 NC_011416.1 hypothetical protein 24741 7003185 ECSE_P3-0027 Escherichia coli SE11 hypothetical protein YP_002295981.1 24565 D 409438 CDS YP_002295982.1 209921903 7003186 24850..26046 1 NC_011416.1 transposase 26046 7003186 ECSE_P3-0028 Escherichia coli SE11 transposase YP_002295982.1 24850 D 409438 CDS YP_002295983.1 209921904 7003187 complement(26182..26547) 1 NC_011416.1 transposase 26547 7003187 ECSE_P3-0029 Escherichia coli SE11 transposase YP_002295983.1 26182 R 409438 CDS YP_002295984.1 209921905 7003188 27049..27315 1 NC_011416.1 hypothetical protein 27315 7003188 ECSE_P3-0030 Escherichia coli SE11 hypothetical protein YP_002295984.1 27049 D 409438 CDS YP_002295985.1 209921906 7003189 28243..30681 1 NC_011416.1 fimbrial usher protein FaeD 30681 7003189 ECSE_P3-0031 Escherichia coli SE11 fimbrial usher protein FaeD YP_002295985.1 28243 D 409438 CDS YP_002295986.1 209921907 7003190 30674..31450 1 NC_011416.1 fimbrial chaperone FaeE 31450 7003190 ECSE_P3-0032 Escherichia coli SE11 fimbrial chaperone FaeE YP_002295986.1 30674 D 409438 CDS YP_002295987.1 209921908 7003191 31485..31976 1 NC_011416.1 fimbrial protein FaeF 31976 7003191 ECSE_P3-0033 Escherichia coli SE11 fimbrial protein FaeF YP_002295987.1 31485 D 409438 CDS YP_002295988.1 209921909 7003192 32215..33054 1 NC_011416.1 fimbrial protein FaeG 33054 7003192 ECSE_P3-0034 Escherichia coli SE11 fimbrial protein FaeG YP_002295988.1 32215 D 409438 CDS YP_002295989.1 209921910 7003193 33225..34022 1 NC_011416.1 fimbrial protein FaeH 34022 7003193 ECSE_P3-0035 Escherichia coli SE11 fimbrial protein FaeH YP_002295989.1 33225 D 409438 CDS YP_002295990.1 209921911 7003194 34052..34816 1 NC_011416.1 fimbrial protein FaeI 34816 7003194 ECSE_P3-0036 Escherichia coli SE11 fimbrial protein FaeI YP_002295990.1 34052 D 409438 CDS YP_002295991.1 209921912 7003195 34833..35606 1 NC_011416.1 fimbrial protein FaeJ 35606 7003195 ECSE_P3-0037 Escherichia coli SE11 fimbrial protein FaeJ YP_002295991.1 34833 D 409438 CDS YP_002295992.1 209921913 7003196 complement(35756..36019) 1 NC_011416.1 hypothetical protein 36019 7003196 ECSE_P3-0038 Escherichia coli SE11 hypothetical protein YP_002295992.1 35756 R 409438 CDS YP_002295993.1 209921914 7003197 complement(36077..36976) 1 NC_011416.1 transposase 36976 7003197 ECSE_P3-0039 Escherichia coli SE11 transposase YP_002295993.1 36077 R 409438 CDS YP_002295994.1 209921915 7003198 complement(36964..37290) 1 NC_011416.1 transposase 37290 7003198 ECSE_P3-0040 Escherichia coli SE11 transposase YP_002295994.1 36964 R 409438 CDS YP_002295995.1 209921916 7003199 37426..37851 1 NC_011416.1 truncated transposase 37851 7003199 ECSE_P3-0041 Escherichia coli SE11 truncated transposase YP_002295995.1 37426 D 409438 CDS YP_002295996.1 209921917 7003200 37851..38864 1 NC_011416.1 truncated transposase 38864 7003200 ECSE_P3-0042 Escherichia coli SE11 truncated transposase YP_002295996.1 37851 D 409438 CDS YP_002295997.1 209921918 7003201 complement(39287..39463) 1 NC_011416.1 hypothetical protein 39463 7003201 ECSE_P3-0043 Escherichia coli SE11 hypothetical protein YP_002295997.1 39287 R 409438 CDS YP_002295998.1 209921919 7003202 complement(39533..41011) 1 NC_011416.1 putative transport protein 41011 7003202 ECSE_P3-0044 Escherichia coli SE11 putative transport protein YP_002295998.1 39533 R 409438 CDS YP_002295999.1 209921920 7003203 complement(41059..42711) 1 NC_011416.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 42711 7003203 ECSE_P3-0045 Escherichia coli SE11 malate dehydrogenase YP_002295999.1 41059 R 409438 CDS YP_002296000.1 209921921 7003204 complement(42794..43891) 1 NC_011416.1 choloylglycine hydrolase 43891 7003204 ECSE_P3-0046 Escherichia coli SE11 choloylglycine hydrolase YP_002296000.1 42794 R 409438 CDS YP_002296001.1 209921922 7003205 complement(43934..44233) 1 NC_011416.1 hypothetical protein 44233 7003205 ECSE_P3-0047 Escherichia coli SE11 hypothetical protein YP_002296001.1 43934 R 409438 CDS YP_002296002.1 209921923 7003206 44301..44969 1 NC_011416.1 putative acetoin reductase 44969 7003206 ECSE_P3-0048 Escherichia coli SE11 putative acetoin reductase YP_002296002.1 44301 D 409438 CDS YP_002296003.1 209921924 7003207 complement(45482..45643) 1 NC_011416.1 hypothetical protein 45643 7003207 ECSE_P3-0049 Escherichia coli SE11 hypothetical protein YP_002296003.1 45482 R 409438 CDS YP_002296004.1 209921925 7003208 45716..45943 1 NC_011416.1 transposase 45943 7003208 ECSE_P3-0050 Escherichia coli SE11 transposase YP_002296004.1 45716 D 409438 CDS YP_002296005.1 209921926 7003209 45962..47191 1 NC_011416.1 hypothetical protein 47191 7003209 ECSE_P3-0051 Escherichia coli SE11 hypothetical protein YP_002296005.1 45962 D 409438 CDS YP_002296006.1 209921927 7003210 complement(47353..47769) 1 NC_011416.1 hypothetical protein 47769 7003210 ECSE_P3-0052 Escherichia coli SE11 hypothetical protein YP_002296006.1 47353 R 409438 CDS YP_002296007.1 209921928 7003211 complement(47766..47996) 1 NC_011416.1 hypothetical protein 47996 7003211 ECSE_P3-0053 Escherichia coli SE11 hypothetical protein YP_002296007.1 47766 R 409438 CDS YP_002296008.1 209921929 7003212 complement(48133..48309) 1 NC_011416.1 truncated transposase 48309 7003212 ECSE_P3-0054 Escherichia coli SE11 truncated transposase YP_002296008.1 48133 R 409438 CDS YP_002296009.1 209921930 7003213 complement(48297..48623) 1 NC_011416.1 transposase 48623 7003213 ECSE_P3-0055 Escherichia coli SE11 transposase YP_002296009.1 48297 R 409438 CDS YP_002296010.1 209921931 7003214 complement(48796..49029) 1 NC_011416.1 hypothetical protein 49029 7003214 ECSE_P3-0056 Escherichia coli SE11 hypothetical protein YP_002296010.1 48796 R 409438 CDS YP_002296011.1 209921932 7003215 complement(49207..50091) 1 NC_011416.1 putative transcription regulator 50091 7003215 ECSE_P3-0057 Escherichia coli SE11 putative transcription regulator YP_002296011.1 49207 R 409438 CDS YP_002296012.1 209921933 7003216 50376..51206 1 NC_011416.1 putative transcription regulator 51206 7003216 ECSE_P3-0058 Escherichia coli SE11 putative transcription regulator YP_002296012.1 50376 D 409438 CDS YP_002296013.1 209921934 7003217 complement(51251..52069) 1 NC_011416.1 hypothetical protein 52069 7003217 ECSE_P3-0059 Escherichia coli SE11 hypothetical protein YP_002296013.1 51251 R 409438 CDS YP_002296014.1 209921935 7003218 complement(53582..56194) 1 NC_011416.1 putative fimbrial usher protein 56194 7003218 ECSE_P3-0060 Escherichia coli SE11 putative fimbrial usher protein YP_002296014.1 53582 R 409438 CDS YP_002296015.1 209921936 7003219 complement(56198..56923) 1 NC_011416.1 putative fimbrial chaperone 56923 7003219 ECSE_P3-0061 Escherichia coli SE11 putative fimbrial chaperone YP_002296015.1 56198 R 409438 CDS YP_002296016.1 209921937 7003220 complement(56934..57635) 1 NC_011416.1 putative fimbrial chaperone 57635 7003220 ECSE_P3-0062 Escherichia coli SE11 putative fimbrial chaperone YP_002296016.1 56934 R 409438 CDS YP_002296017.1 209921938 7003221 complement(57638..58201) 1 NC_011416.1 putative fimbrial protein 58201 7003221 ECSE_P3-0063 Escherichia coli SE11 putative fimbrial protein YP_002296017.1 57638 R 409438 CDS YP_002296018.1 209921939 7003222 complement(58231..58794) 1 NC_011416.1 putative fimbrial protein 58794 7003222 ECSE_P3-0064 Escherichia coli SE11 putative fimbrial protein YP_002296018.1 58231 R 409438 CDS YP_002296019.1 209921940 7003223 complement(58802..59512) 1 NC_011416.1 putative fimbrial chaperone 59512 7003223 ECSE_P3-0065 Escherichia coli SE11 putative fimbrial chaperone YP_002296019.1 58802 R 409438 CDS YP_002296020.1 209921941 7003224 complement(59579..60133) 1 NC_011416.1 putative fimbrial protein 60133 7003224 ECSE_P3-0066 Escherichia coli SE11 putative fimbrial protein YP_002296020.1 59579 R 409438 CDS YP_002296021.1 209921942 7003225 60409..60537 1 NC_011416.1 hypothetical protein 60537 7003225 ECSE_P3-0067 Escherichia coli SE11 hypothetical protein YP_002296021.1 60409 D 409438 CDS YP_002296026.1 209921953 7003351 46..1077 1 NC_011419.1 replication initiation protein 1077 7003351 ECSE_P1-0001 Escherichia coli SE11 replication initiation protein YP_002296026.1 46 D 409438 CDS YP_002296027.1 209921954 7003228 1981..2265 1 NC_011419.1 hypothetical protein 2265 7003228 ECSE_P1-0002 Escherichia coli SE11 hypothetical protein YP_002296027.1 1981 D 409438 CDS YP_002296028.1 209921955 7003229 2265..2540 1 NC_011419.1 hypothetical protein 2540 7003229 ECSE_P1-0003 Escherichia coli SE11 hypothetical protein YP_002296028.1 2265 D 409438 CDS YP_002296029.1 209921956 7003230 2646..2933 1 NC_011419.1 hypothetical protein 2933 7003230 ECSE_P1-0004 Escherichia coli SE11 hypothetical protein YP_002296029.1 2646 D 409438 CDS YP_002296030.1 209921957 7003231 complement(3124..3390) 1 NC_011419.1 hypothetical protein 3390 7003231 ECSE_P1-0005 Escherichia coli SE11 hypothetical protein YP_002296030.1 3124 R 409438 CDS YP_002296031.1 209921958 7003232 complement(3390..3884) 1 NC_011419.1 hypothetical protein 3884 7003232 ECSE_P1-0006 Escherichia coli SE11 hypothetical protein YP_002296031.1 3390 R 409438 CDS YP_002296032.1 209921959 7003233 complement(3940..4317) 1 NC_011419.1 truncated YafB protein 4317 7003233 ECSE_P1-0007 Escherichia coli SE11 truncated YafB protein YP_002296032.1 3940 R 409438 CDS YP_002296033.1 209921960 7003234 complement(4357..5079) 1 NC_011419.1 transposase 5079 7003234 ECSE_P1-0008 Escherichia coli SE11 transposase YP_002296033.1 4357 R 409438 CDS YP_002296034.1 209921961 7003235 complement(5108..5275) 1 NC_011419.1 hypothetical protein 5275 7003235 ECSE_P1-0009 Escherichia coli SE11 hypothetical protein YP_002296034.1 5108 R 409438 CDS YP_002296035.1 209921962 7003236 complement(6503..7162) 1 NC_011419.1 tetracycline repressor protein TetR 7162 7003236 ECSE_P1-0010 Escherichia coli SE11 tetracycline repressor protein TetR YP_002296035.1 6503 R 409438 CDS YP_002296036.1 209921963 7003237 7255..8445 1 NC_011419.1 tetracycline resistance structural protein TetA 8445 7003237 ECSE_P1-0011 Escherichia coli SE11 tetracycline resistance structural protein TetA YP_002296036.1 7255 D 409438 CDS YP_002296037.1 209921964 7003238 complement(8501..8629) 1 NC_011419.1 hypothetical protein 8629 7003238 ECSE_P1-0012 Escherichia coli SE11 hypothetical protein YP_002296037.1 8501 R 409438 CDS YP_002296038.1 209921965 7003239 8692..8883 1 NC_011419.1 hypothetical protein 8883 7003239 ECSE_P1-0013 Escherichia coli SE11 hypothetical protein YP_002296038.1 8692 D 409438 CDS YP_002296039.1 209921966 7003240 8895..9173 1 NC_011419.1 putative resolvase 9173 7003240 ECSE_P1-0014 Escherichia coli SE11 putative resolvase YP_002296039.1 8895 D 409438 CDS YP_002296040.1 209921967 7003241 complement(9403..9525) 1 NC_011419.1 hypothetical protein 9525 7003241 ECSE_P1-0015 Escherichia coli SE11 hypothetical protein YP_002296040.1 9403 R 409438 CDS YP_002296041.1 209921968 7003242 complement(9531..10253) 1 NC_011419.1 transposase 10253 7003242 ECSE_P1-0016 Escherichia coli SE11 transposase YP_002296041.1 9531 R 409438 CDS YP_002296042.1 209921969 7003243 complement(10272..10544) 1 NC_011419.1 truncated YafB protein 10544 7003243 ECSE_P1-0017 Escherichia coli SE11 truncated YafB protein YP_002296042.1 10272 R 409438 CDS YP_002296043.1 209921970 7003244 10898..12244 1 NC_011419.1 hypothetical protein 12244 7003244 ECSE_P1-0018 Escherichia coli SE11 hypothetical protein YP_002296043.1 10898 D 409438 CDS YP_002296044.1 209921971 7003245 12522..14402 1 NC_011419.1 colicin protein 14402 7003245 ECSE_P1-0019 Escherichia coli SE11 colicin protein YP_002296044.1 12522 D 409438 CDS YP_002296045.1 209921972 7003246 complement(14424..14759) 1 NC_011419.1 colicin immunity protein 14759 7003246 ECSE_P1-0020 Escherichia coli SE11 colicin immunity protein YP_002296045.1 14424 R 409438 CDS YP_002296046.1 209921973 7003247 14927..15235 1 NC_011419.1 hypothetical protein 15235 7003247 ECSE_P1-0021 Escherichia coli SE11 hypothetical protein YP_002296046.1 14927 D 409438 CDS YP_002296047.1 209921974 7003248 complement(15255..15845) 1 NC_011419.1 hypothetical protein 15845 7003248 ECSE_P1-0022 Escherichia coli SE11 hypothetical protein YP_002296047.1 15255 R 409438 CDS YP_002296048.1 209921975 7003249 complement(15845..16108) 1 NC_011419.1 hypothetical protein 16108 7003249 ECSE_P1-0023 Escherichia coli SE11 hypothetical protein YP_002296048.1 15845 R 409438 CDS YP_002296049.1 209921976 7003250 16211..16342 1 NC_011419.1 hypothetical protein 16342 7003250 ECSE_P1-0024 Escherichia coli SE11 hypothetical protein YP_002296049.1 16211 D 409438 CDS YP_002296050.1 209921977 7003251 16382..16873 1 NC_011419.1 hypothetical protein 16873 7003251 ECSE_P1-0025 Escherichia coli SE11 hypothetical protein YP_002296050.1 16382 D 409438 CDS YP_002296051.1 209921978 7003252 16885..17643 1 NC_011419.1 hypothetical protein 17643 7003252 ECSE_P1-0026 Escherichia coli SE11 hypothetical protein YP_002296051.1 16885 D 409438 CDS YP_002296052.1 209921979 7003253 17847..19457 1 NC_011419.1 hypothetical protein 19457 7003253 ECSE_P1-0027 Escherichia coli SE11 hypothetical protein YP_002296052.1 17847 D 409438 CDS YP_002296053.1 209921980 7003254 19492..20616 1 NC_011419.1 hypothetical protein 20616 7003254 ECSE_P1-0028 Escherichia coli SE11 hypothetical protein YP_002296053.1 19492 D 409438 CDS YP_002296054.1 209921981 7003255 20616..20906 1 NC_011419.1 hypothetical protein 20906 7003255 ECSE_P1-0029 Escherichia coli SE11 hypothetical protein YP_002296054.1 20616 D 409438 CDS YP_002296055.1 209921982 7003256 21422..22480 1 NC_011419.1 hypothetical protein 22480 7003256 ECSE_P1-0030 Escherichia coli SE11 hypothetical protein YP_002296055.1 21422 D 409438 CDS YP_002296056.1 209921983 7003257 complement(22654..22998) 1 NC_011419.1 abortive infection protein 22998 7003257 ECSE_P1-0031 Escherichia coli SE11 abortive infection protein YP_002296056.1 22654 R 409438 CDS YP_002296057.1 209921984 7003258 23521..23730 1 NC_011419.1 hypothetical protein 23730 7003258 ECSE_P1-0032 Escherichia coli SE11 hypothetical protein YP_002296057.1 23521 D 409438 CDS YP_002296058.1 209921985 7003259 complement(23800..24774) 1 NC_011419.1 hypothetical protein 24774 7003259 ECSE_P1-0033 Escherichia coli SE11 hypothetical protein YP_002296058.1 23800 R 409438 CDS YP_002296059.1 209921986 7003260 25243..25593 1 NC_011419.1 hypothetical protein 25593 7003260 ECSE_P1-0034 Escherichia coli SE11 hypothetical protein YP_002296059.1 25243 D 409438 CDS YP_002296060.1 209921987 7003261 25652..26473 1 NC_011419.1 hypothetical protein 26473 7003261 ECSE_P1-0035 Escherichia coli SE11 hypothetical protein YP_002296060.1 25652 D 409438 CDS YP_002296061.1 209921988 7003262 26473..27252 1 NC_011419.1 resolvase 27252 7003262 ECSE_P1-0036 Escherichia coli SE11 resolvase YP_002296061.1 26473 D 409438 CDS YP_002296062.1 209921989 7003263 27432..28076 1 NC_011419.1 hypothetical protein 28076 7003263 ECSE_P1-0037 Escherichia coli SE11 hypothetical protein YP_002296062.1 27432 D 409438 CDS YP_002296063.1 209921990 7003264 28163..28471 1 NC_011419.1 hypothetical protein 28471 7003264 ECSE_P1-0038 Escherichia coli SE11 hypothetical protein YP_002296063.1 28163 D 409438 CDS YP_002296064.1 209921991 7003265 28885..29865 1 NC_011419.1 ParA protein 29865 7003265 ECSE_P1-0039 Escherichia coli SE11 ParA protein YP_002296064.1 28885 D 409438 CDS YP_002296065.1 209921992 7003266 29858..30274 1 NC_011419.1 ParB protein 30274 7003266 ECSE_P1-0040 Escherichia coli SE11 ParB protein YP_002296065.1 29858 D 409438 CDS YP_002296066.1 209921993 7003267 complement(30276..31550) 1 NC_011419.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization; DNA polymerase V subunit UmuC 31550 umuC 7003267 umuC Escherichia coli SE11 DNA polymerase V subunit UmuC YP_002296066.1 30276 R 409438 CDS YP_002296067.1 209921994 7003268 complement(31550..31987) 1 NC_011419.1 ImpA protein 31987 7003268 ECSE_P1-0042 Escherichia coli SE11 ImpA protein YP_002296067.1 31550 R 409438 CDS YP_002296068.1 209921995 7003269 complement(31984..32232) 1 NC_011419.1 ImpC protein 32232 7003269 ECSE_P1-0043 Escherichia coli SE11 ImpC protein YP_002296068.1 31984 R 409438 CDS YP_002296069.1 209921996 7003270 32343..32612 1 NC_011419.1 hypothetical protein 32612 7003270 ECSE_P1-0044 Escherichia coli SE11 hypothetical protein YP_002296069.1 32343 D 409438 CDS YP_002296070.1 209921997 7003271 32581..33552 1 NC_011419.1 hypothetical protein 33552 7003271 ECSE_P1-0045 Escherichia coli SE11 hypothetical protein YP_002296070.1 32581 D 409438 CDS YP_002296071.1 209921998 7003272 33549..33860 1 NC_011419.1 hypothetical protein 33860 7003272 ECSE_P1-0046 Escherichia coli SE11 hypothetical protein YP_002296071.1 33549 D 409438 CDS YP_002296072.1 209921999 7003273 33937..34620 1 NC_011419.1 putative methylase 34620 7003273 ECSE_P1-0047 Escherichia coli SE11 putative methylase YP_002296072.1 33937 D 409438 CDS YP_002296073.1 209922000 7003274 34621..34842 1 NC_011419.1 hypothetical protein 34842 7003274 ECSE_P1-0048 Escherichia coli SE11 hypothetical protein YP_002296073.1 34621 D 409438 CDS YP_002296074.1 209922001 7003275 34856..35290 1 NC_011419.1 hypothetical protein 35290 7003275 ECSE_P1-0049 Escherichia coli SE11 hypothetical protein YP_002296074.1 34856 D 409438 CDS YP_002296075.1 209922002 7003276 35336..36112 1 NC_011419.1 hypothetical protein 36112 7003276 ECSE_P1-0050 Escherichia coli SE11 hypothetical protein YP_002296075.1 35336 D 409438 CDS YP_002296076.1 209922003 7003277 35985..36563 1 NC_011419.1 hypothetical protein 36563 7003277 ECSE_P1-0051 Escherichia coli SE11 hypothetical protein YP_002296076.1 35985 D 409438 CDS YP_002296077.1 209922004 7003278 36529..36954 1 NC_011419.1 hypothetical protein 36954 7003278 ECSE_P1-0052 Escherichia coli SE11 hypothetical protein YP_002296077.1 36529 D 409438 CDS YP_002296078.1 209922005 7003279 37001..37423 1 NC_011419.1 hypothetical protein 37423 7003279 ECSE_P1-0053 Escherichia coli SE11 hypothetical protein YP_002296078.1 37001 D 409438 CDS YP_002296079.1 209922006 7003280 37420..37611 1 NC_011419.1 hypothetical protein 37611 7003280 ECSE_P1-0054 Escherichia coli SE11 hypothetical protein YP_002296079.1 37420 D 409438 CDS YP_002296080.1 209922007 7003281 37683..37997 1 NC_011419.1 hypothetical protein 37997 7003281 ECSE_P1-0055 Escherichia coli SE11 hypothetical protein YP_002296080.1 37683 D 409438 CDS YP_002296081.1 209922008 7003282 38178..38609 1 NC_011419.1 single-stranded DNA binding protein Ssb 38609 7003282 ECSE_P1-0056 Escherichia coli SE11 single-stranded DNA binding protein Ssb YP_002296081.1 38178 D 409438 CDS YP_002296082.1 209922009 7003283 38666..38899 1 NC_011419.1 hypothetical protein 38899 7003283 ECSE_P1-0057 Escherichia coli SE11 hypothetical protein YP_002296082.1 38666 D 409438 CDS YP_002296083.1 209922010 7003284 38961..40919 1 NC_011419.1 hypothetical protein 40919 7003284 ECSE_P1-0058 Escherichia coli SE11 hypothetical protein YP_002296083.1 38961 D 409438 CDS YP_002296084.1 209922011 7003285 40974..41408 1 NC_011419.1 plasmid SOS inhibition protein B 41408 psiB 7003285 psiB Escherichia coli SE11 plasmid SOS inhibition protein B YP_002296084.1 40974 D 409438 CDS YP_002296085.1 209922012 7003286 41405..42124 1 NC_011419.1 PsiA; plasmid SOS inhibition protein A 42124 7003286 ECSE_P1-0060 Escherichia coli SE11 plasmid SOS inhibition protein A YP_002296085.1 41405 D 409438 CDS YP_002296086.1 209922013 7003287 42121..42717 1 NC_011419.1 hypothetical protein 42717 7003287 ECSE_P1-0061 Escherichia coli SE11 hypothetical protein YP_002296086.1 42121 D 409438 CDS YP_002296087.1 209922014 7003288 43180..43680 1 NC_011419.1 anti-restriction protein 43680 7003288 ECSE_P1-0062 Escherichia coli SE11 anti-restriction protein YP_002296087.1 43180 D 409438 CDS YP_002296088.1 209922015 7003289 complement(43820..44119) 1 NC_011419.1 hypothetical protein 44119 7003289 ECSE_P1-0063 Escherichia coli SE11 hypothetical protein YP_002296088.1 43820 R 409438 CDS YP_002296089.1 209922016 7003290 complement(44101..44304) 1 NC_011419.1 hypothetical protein 44304 7003290 ECSE_P1-0064 Escherichia coli SE11 hypothetical protein YP_002296089.1 44101 R 409438 CDS YP_002296090.1 209922017 7003291 44409..44843 1 NC_011419.1 hypothetical protein 44843 7003291 ECSE_P1-0065 Escherichia coli SE11 hypothetical protein YP_002296090.1 44409 D 409438 CDS YP_002296091.1 209922018 7003292 44937..45203 1 NC_011419.1 hypothetical protein 45203 7003292 ECSE_P1-0066 Escherichia coli SE11 hypothetical protein YP_002296091.1 44937 D 409438 CDS YP_002296092.1 209922019 7003293 45268..46182 1 NC_011419.1 hypothetical protein 46182 7003293 ECSE_P1-0067 Escherichia coli SE11 hypothetical protein YP_002296092.1 45268 D 409438 CDS YP_002296093.1 209922020 7003294 46245..46403 1 NC_011419.1 hypothetical protein 46403 7003294 ECSE_P1-0068 Escherichia coli SE11 hypothetical protein YP_002296093.1 46245 D 409438 CDS YP_002296094.1 209922021 7003295 complement(46434..46685) 1 NC_011419.1 hypothetical protein 46685 7003295 ECSE_P1-0069 Escherichia coli SE11 hypothetical protein YP_002296094.1 46434 R 409438 CDS YP_002296095.1 209922022 7003296 complement(46744..47256) 1 NC_011419.1 hypothetical protein 47256 7003296 ECSE_P1-0070 Escherichia coli SE11 hypothetical protein YP_002296095.1 46744 R 409438 CDS YP_002296096.1 209922023 7003297 47258..48109 1 NC_011419.1 hypothetical protein 48109 7003297 ECSE_P1-0071 Escherichia coli SE11 hypothetical protein YP_002296096.1 47258 D 409438 CDS YP_002296097.1 209922024 7003298 complement(48195..48530) 1 NC_011419.1 hypothetical protein 48530 7003298 ECSE_P1-0072 Escherichia coli SE11 hypothetical protein YP_002296097.1 48195 R 409438 CDS YP_002296098.1 209922025 7003299 48763..49095 1 NC_011419.1 relaxosome component NikA 49095 7003299 ECSE_P1-0073 Escherichia coli SE11 relaxosome component NikA YP_002296098.1 48763 D 409438 CDS YP_002296099.1 209922026 7003300 49106..51805 1 NC_011419.1 relaxase NikB 51805 7003300 ECSE_P1-0074 Escherichia coli SE11 relaxase NikB YP_002296099.1 49106 D 409438 CDS YP_002296100.1 209922027 7003301 complement(51842..54133) 1 NC_011419.1 TrbC protein 54133 7003301 ECSE_P1-0075 Escherichia coli SE11 TrbC protein YP_002296100.1 51842 R 409438 CDS YP_002296101.1 209922028 7003302 complement(54126..55196) 1 NC_011419.1 TrbB protein 55196 7003302 ECSE_P1-0076 Escherichia coli SE11 TrbB protein YP_002296101.1 54126 R 409438 CDS YP_002296102.1 209922029 7003303 complement(55215..56423) 1 NC_011419.1 TrbA protein 56423 7003303 ECSE_P1-0077 Escherichia coli SE11 TrbA protein YP_002296102.1 55215 R 409438 CDS YP_002296103.1 209922030 7003304 56576..56860 1 NC_011419.1 plasmid stability protein 56860 7003304 ECSE_P1-0078 Escherichia coli SE11 plasmid stability protein YP_002296103.1 56576 D 409438 CDS YP_002296104.1 209922031 7003305 complement(56939..57190) 1 NC_011419.1 hypothetical protein 57190 7003305 ECSE_P1-0079 Escherichia coli SE11 hypothetical protein YP_002296104.1 56939 R 409438 CDS YP_002296105.1 209922032 7003306 57656..57781 1 NC_011419.1 hypothetical protein 57781 7003306 ECSE_P1-0080 Escherichia coli SE11 hypothetical protein YP_002296105.1 57656 D 409438 CDS YP_002296106.1 209922033 7003307 complement(57846..58088) 1 NC_011419.1 hypothetical protein 58088 7003307 ECSE_P1-0081 Escherichia coli SE11 hypothetical protein YP_002296106.1 57846 R 409438 CDS YP_002296107.1 209922034 7003308 complement(58207..58416) 1 NC_011419.1 putative regulator protein 58416 7003308 ECSE_P1-0082 Escherichia coli SE11 putative regulator protein YP_002296107.1 58207 R 409438 CDS YP_002296108.1 209922035 7003309 complement(58514..59176) 1 NC_011419.1 surface exclusion protein ExcA 59176 7003309 ECSE_P1-0083 Escherichia coli SE11 surface exclusion protein ExcA YP_002296108.1 58514 R 409438 CDS YP_002296109.1 209922036 7003310 complement(59247..61484) 1 NC_011419.1 TraY protein 61484 7003310 ECSE_P1-0084 Escherichia coli SE11 TraY protein YP_002296109.1 59247 R 409438 CDS YP_002296110.1 209922037 7003311 complement(61512..62096) 1 NC_011419.1 TraX protein 62096 7003311 ECSE_P1-0085 Escherichia coli SE11 TraX protein YP_002296110.1 61512 R 409438 CDS YP_002296111.1 209922038 7003312 complement(62125..63327) 1 NC_011419.1 TraW protein 63327 7003312 ECSE_P1-0086 Escherichia coli SE11 TraW protein YP_002296111.1 62125 R 409438 CDS YP_002296112.1 209922039 7003313 complement(63294..63908) 1 NC_011419.1 TraV protein 63908 7003313 ECSE_P1-0087 Escherichia coli SE11 TraV protein YP_002296112.1 63294 R 409438 CDS YP_002296113.1 209922040 7003314 complement(63908..66952) 1 NC_011419.1 TraU protein 66952 7003314 ECSE_P1-0088 Escherichia coli SE11 TraU protein YP_002296113.1 63908 R 409438 CDS YP_002296114.1 209922041 7003315 complement(67042..67842) 1 NC_011419.1 TraT protein 67842 7003315 ECSE_P1-0089 Escherichia coli SE11 TraT protein YP_002296114.1 67042 R 409438 CDS YP_002296115.1 209922042 7003316 complement(67826..68014) 1 NC_011419.1 TraS protein 68014 7003316 ECSE_P1-0090 Escherichia coli SE11 TraS protein YP_002296115.1 67826 R 409438 CDS YP_002296116.1 209922043 7003317 complement(68078..68482) 1 NC_011419.1 TraR protein 68482 7003317 ECSE_P1-0091 Escherichia coli SE11 TraR protein YP_002296116.1 68078 R 409438 CDS YP_002296117.1 209922044 7003318 complement(68532..69059) 1 NC_011419.1 TraQ protein 69059 7003318 ECSE_P1-0092 Escherichia coli SE11 TraQ protein YP_002296117.1 68532 R 409438 CDS YP_002296118.1 209922045 7003319 complement(69059..69763) 1 NC_011419.1 TraP protein 69763 7003319 ECSE_P1-0093 Escherichia coli SE11 TraP protein YP_002296118.1 69059 R 409438 CDS YP_002296119.1 209922046 7003320 complement(69763..71052) 1 NC_011419.1 TraO protein 71052 7003320 ECSE_P1-0094 Escherichia coli SE11 TraO protein YP_002296119.1 69763 R 409438 CDS YP_002296120.1 209922047 7003321 complement(71055..72038) 1 NC_011419.1 TraN protein 72038 7003321 ECSE_P1-0095 Escherichia coli SE11 TraN protein YP_002296120.1 71055 R 409438 CDS YP_002296121.1 209922048 7003322 complement(72049..72741) 1 NC_011419.1 TraM protein 72741 7003322 ECSE_P1-0096 Escherichia coli SE11 TraM protein YP_002296121.1 72049 R 409438 CDS YP_002296122.1 209922049 7003323 complement(72738..73085) 1 NC_011419.1 TraL protein 73085 7003323 ECSE_P1-0097 Escherichia coli SE11 TraL protein YP_002296122.1 72738 R 409438 CDS YP_002296123.1 209922050 7003324 complement(73103..76870) 1 NC_011419.1 DNA primase SogL 76870 7003324 ECSE_P1-0098 Escherichia coli SE11 DNA primase SogL YP_002296123.1 73103 R 409438 CDS YP_002296124.1 209922051 7003325 complement(76960..77511) 1 NC_011419.1 endonuclease 77511 7003325 ECSE_P1-0099 Escherichia coli SE11 endonuclease YP_002296124.1 76960 R 409438 CDS YP_002296125.1 209922052 7003326 complement(77526..77816) 1 NC_011419.1 TraK protein 77816 7003326 ECSE_P1-0100 Escherichia coli SE11 TraK protein YP_002296125.1 77526 R 409438 CDS YP_002296126.1 209922053 7003327 complement(77813..78961) 1 NC_011419.1 TraJ protein 78961 7003327 ECSE_P1-0101 Escherichia coli SE11 TraJ protein YP_002296126.1 77813 R 409438 CDS YP_002296127.1 209922054 7003328 complement(78958..79776) 1 NC_011419.1 TraI protein 79776 7003328 ECSE_P1-0102 Escherichia coli SE11 TraI protein YP_002296127.1 78958 R 409438 CDS YP_002296128.1 209922055 7003329 complement(79773..80231) 1 NC_011419.1 TraH protein 80231 7003329 ECSE_P1-0103 Escherichia coli SE11 TraH protein YP_002296128.1 79773 R 409438 CDS YP_002296129.1 209922056 7003330 complement(80626..81210) 1 NC_011419.1 TraG protein 81210 7003330 ECSE_P1-0104 Escherichia coli SE11 TraG protein YP_002296129.1 80626 R 409438 CDS YP_002296130.1 209922057 7003331 complement(81270..82472) 1 NC_011419.1 TraF protein 82472 7003331 ECSE_P1-0105 Escherichia coli SE11 TraF protein YP_002296130.1 81270 R 409438 CDS YP_002296131.1 209922058 7003332 complement(82709..83383) 1 NC_011419.1 TraE protein 83383 7003332 ECSE_P1-0106 Escherichia coli SE11 TraE protein YP_002296131.1 82709 R 409438 CDS YP_002296132.1 209922059 7003333 complement(83773..85065) 1 NC_011419.1 shufflon protein 85065 7003333 ECSE_P1-0107 Escherichia coli SE11 shufflon protein YP_002296132.1 83773 R 409438 CDS YP_002296133.1 209922060 7003334 complement(85065..85721) 1 NC_011419.1 prepilin peptidase PilU 85721 7003334 ECSE_P1-0108 Escherichia coli SE11 prepilin peptidase PilU YP_002296133.1 85065 R 409438 CDS YP_002296134.1 209922061 7003335 complement(85706..86266) 1 NC_011419.1 PilT protein 86266 7003335 ECSE_P1-0109 Escherichia coli SE11 PilT protein YP_002296134.1 85706 R 409438 CDS YP_002296135.1 209922062 7003336 complement(86276..86890) 1 NC_011419.1 type IV prepilin PilS 86890 7003336 ECSE_P1-0110 Escherichia coli SE11 type IV prepilin PilS YP_002296135.1 86276 R 409438 CDS YP_002296136.1 209922063 7003337 complement(86908..88005) 1 NC_011419.1 PilR protein 88005 7003337 ECSE_P1-0111 Escherichia coli SE11 PilR protein YP_002296136.1 86908 R 409438 CDS YP_002296137.1 209922064 7003338 complement(88018..89571) 1 NC_011419.1 ATP-binding protein PilQ 89571 7003338 ECSE_P1-0112 Escherichia coli SE11 ATP-binding protein PilQ YP_002296137.1 88018 R 409438 CDS YP_002296138.1 209922065 7003339 complement(89582..90034) 1 NC_011419.1 pilus assembly protein PilP 90034 7003339 ECSE_P1-0113 Escherichia coli SE11 pilus assembly protein PilP YP_002296138.1 89582 R 409438 CDS YP_002296139.1 209922066 7003340 complement(90021..91316) 1 NC_011419.1 PilO protein 91316 7003340 ECSE_P1-0114 Escherichia coli SE11 PilO protein YP_002296139.1 90021 R 409438 CDS YP_002296140.1 209922067 7003341 complement(91309..92991) 1 NC_011419.1 lipoprotein PilN 92991 7003341 ECSE_P1-0115 Escherichia coli SE11 lipoprotein PilN YP_002296140.1 91309 R 409438 CDS YP_002296141.1 209922068 7003342 complement(93005..93442) 1 NC_011419.1 PilM protein 93442 7003342 ECSE_P1-0116 Escherichia coli SE11 PilM protein YP_002296141.1 93005 R 409438 CDS YP_002296142.1 209922069 7003343 complement(93442..94509) 1 NC_011419.1 lipoprotein PilL 94509 7003343 ECSE_P1-0117 Escherichia coli SE11 lipoprotein PilL YP_002296142.1 93442 R 409438 CDS YP_002296143.1 209922070 7003344 complement(94543..95133) 1 NC_011419.1 PilK protein 95133 7003344 ECSE_P1-0118 Escherichia coli SE11 PilK protein YP_002296143.1 94543 R 409438 CDS YP_002296144.1 209922071 7003345 complement(95183..95497) 1 NC_011419.1 PilJ protein 95497 7003345 ECSE_P1-0119 Escherichia coli SE11 PilJ protein YP_002296144.1 95183 R 409438 CDS YP_002296145.1 209922072 7003346 complement(95572..95826) 1 NC_011419.1 PilI protein 95826 7003346 ECSE_P1-0120 Escherichia coli SE11 PilI protein YP_002296145.1 95572 R 409438 CDS YP_002296146.1 209922073 7003347 complement(95990..96541) 1 NC_011419.1 TraD protein 96541 7003347 ECSE_P1-0121 Escherichia coli SE11 TraD protein YP_002296146.1 95990 R 409438 CDS YP_002296147.1 209922074 7003348 complement(96714..97397) 1 NC_011419.1 TraC protein 97397 7003348 ECSE_P1-0122 Escherichia coli SE11 TraC protein YP_002296147.1 96714 R 409438 CDS YP_002296148.1 209922075 7003349 complement(97651..98184) 1 NC_011419.1 TraB protein 98184 7003349 ECSE_P1-0123 Escherichia coli SE11 TraB protein YP_002296148.1 97651 R 409438 CDS YP_002296149.1 209922076 7003350 complement(98626..98913) 1 NC_011419.1 TraA protein 98913 7003350 ECSE_P1-0124 Escherichia coli SE11 TraA protein YP_002296149.1 98626 R 409438 CDS