-- dump date   	20140619_090912
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
6106611	IS1203 transposase, truncation
6106620	IS1 transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6106564	yihA; conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
6106456	UV protection protein, truncation
6106629	IS21 transposase orfA, truncation
6106560	colicin-B, truncation
6106526	colicin-B immunity protein Cbi, truncation
6106453	colicin-B immunity protein Cbi, truncation
6106591	resolvase TnpR for Tn3 family transposon, truncation; identified by match to protein family HMM PF02796
6106594	resolvase TnpR for transposon Tn, truncation; identified by match to protein family HMM PF02796
6106548	phage T7 exclusion protein, truncation
6106482	Tn3 family transposase, interruption-N; identified by match to protein family HMM PF01526
6106541	IS26 transposase, interruption-C
6106592	Tn3 family transposase, interruption-C
6106598	IS1 transposase orfB, truncation; identified by match to protein family HMM PF03400
6144869	addiction module toxin component YafQ, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q47149
6147368	yafO; conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
6143280	ykfF; CP4-6 prophage protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P75677
6144745	putative lipoprotein, interruption-C
6146866	putative lipoprotein, interruption-N; identified by similarity to SP:P46122
6146853	ybbY; putative purine permease, interruption-N; identified by match to protein family HMM PF00860
6145475	putative purine permease, interruption-C
6144763	antimicrobial peptide resistance and lipid A acylation protein PagP, interruption-N; identified by similarity to SP:P37001
6145511	antimicrobial peptide resistance and lipid A acylation protein PagP, interruption-C; identified by similarity to SP:P37001; match to protein family HMM PF07017
6142920	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAL19675.1
6144611	zinc transporter ZitB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P75757; match to protein family HMM PF01545; match to protein family HMM TIGR01297
6146822	yehC; gram-negative pilus assembly chaperone, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00345; match to protein family HMM PF02753
6144987	gamma-glutamyltransferase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6146011	ECs1339 protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6144083	IS605 family transposase, truncation
6143791	ISEc13 transposase, interruption-C
6144454	ISEc13 transposase, interruption-N
6143150	IS256 transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF00872
6146903	putative maturase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAB68949.1
6146826	immunoglobulin-binding regulator B homolog, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:AAM53134.1; match to protein family HMM PF02195
6144739	putative TonB-dependent receptor, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAG57058.1; match to protein family HMM PF07715
6144172	ydhS; conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:ABB66083.1
6144089	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P77783; match to protein family HMM PF04879; match to protein family HMM TIGR01409
6146521	IS3 transposase orfB, truncation; identified by match to protein family HMM PF00665
6144055	DNA primase small subunit, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01896
6143647	putative autotransporter, IS5K-containing; identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414
6144613	conserved hypothetical protein, interruption-C; identified by match to protein family HMM PF02902
6147528	IS605 family transposase orfB, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01385
6145020	putative lipoprotein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6143021	PTS system, mannitol-specific cryptic EIICB component, truncation; identified by match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851
6145802	putative membrane protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF04474
6145030	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:ABM42346.1
6142750	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF07513
6147273	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
6145367	IS3 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6147158	putative IS3 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF01527
6147119	IS66 family transposase orfC, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
6145479	IS110 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF02371
6145241	IS3 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P19769
6146800	IS110 family transposase, truncated
6145090	IS66 family transposase orfB, truncation; identified by match to protein family HMM PF05717
6145899	IS66 family transposase orfC, interruption-N
6144295	IS100 transposase orfB, interruption-C; identified by match to protein family HMM PF01695
6144673	IS100 transposase orfB, interruption-N
6147498	IS100 transposase orfA; identified by match to protein family HMM PF00665; match to protein family HMM PF02796
6143190	IS66 family transposase orfC, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6146717	IS66 family transposase orfC, interruption-C; identified by match to protein family HMM PF03050
6144012	IS481 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6145535	ISEc16, orfB, interruption-N
6146319	group II intron-encoded reverse transcriptase/maturase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00078; match to protein family HMM PF08388
6144972	ISEc16, orfB, interruption-C; identified by match to protein family HMM PF00665
6146819	transposon, truncated
6145747	IS256 family transposase, interruption-N; identified by match to protein family HMM PF00872
6145088	IS110 family transposase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02371
6147069	IS1 transposase orfA, truncation; identified by match to protein family HMM PF03400
6145074	putative ISL3 family transposase, interruption-N; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAF60967.1
6144274	ISL3 family transposase. interruption-C; identified by match to protein family HMM PF01610
6146116	ISL3 family transposase, truncation
6147363	putative transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6147485	IS481 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6147054	IS256 family transposase, truncation; identified by match to protein family HMM PF00872
6143140	putative transketolase, truncation; identified by similarity to GB:AAL21241.1
6143915	IS1 transposase orfA, truncation; identified by match to protein family HMM PF03811
6147307	FinO protein
6147357	ProQ family protein, degenerate; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P45577
6145158	IS2 transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF00665
6144998	IS2 transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P51026
6142856	IS21 transposase orfA, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P51026; match to protein family HMM PF01527
6143042	TRAP transporter, DctQ family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF04290
6142829	acriflavine resistance protein F, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P24181; match to protein family HMM PF00873; match to protein family HMM TIGR00915
6146529	putative membrane protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6143225	PTS system, Fru family, IIBC component, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:AAO54490.1; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427
6145873	low affinity tryptophan permease TnaB, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to SP:P23173; match to protein family HMM PF03222; match to protein family HMM TIGR00837
6144922	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAP18831.1
6143715	acetyltransferase family, interruption-C
6146218	acetyltransferase family, interruption-N
6145579	yjgL; conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P39336
6144846	integrase, truncation
6143741	putative IS3 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6146858	putative IS3 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6146128	IS66 family transposase orfC, truncation
6145353	IS21 transposase orfA, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P15025
6145886	IS2 transposase orfB, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P51026
6146876	IS256 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P80011
6143967	conserved hypothetical protein, truncation; identified by similarity to GB:CAH23103.1
6144214	prophage P4 integrase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error
6143993	yjhT; conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
6146846	protein HsdR, truncation; identified by similarity to GB:AAB70710.1