; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_b093_ensembl_72_GCA_000242015.1/genome/Escherichia_coli_b093_ensembl_72_GCA_000242015.1_start_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_b093_ensembl_72_GCA_000242015.1/genome/Escherichia_coli_b093_ensembl_72_GCA_000242015.1_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Escherichia_coli_b093_ensembl_72_GCA_000242015.1/genome/Escherichia_coli_b093_ensembl_72_GCA_000242015.1_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Escherichia_coli_b093_ensembl_72_GCA_000242015.1/genome/Escherichia_coli_b093_ensembl_72_GCA_000242015.1_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	1487
; Sum of sequence lengths      	4461
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	1487
; total oligo occurrences      	1487
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.8890383322125	1322
gtg	gtg	0.0706119704102	105
ttg	ttg	0.0141223940820	21
gca	gca	0.0020174848689	3
cgc	cgc	0.0020174848689	3
ttc	ttc	0.0013449899126	2
tgg	tgg	0.0013449899126	2
ctg	ctg	0.0013449899126	2
acc	acc	0.0013449899126	2
aaa	aaa	0.0013449899126	2
acg	acg	0.0013449899126	2
gta	gta	0.0013449899126	2
cgg	cgg	0.0013449899126	2
gga	gga	0.0013449899126	2
agt	agt	0.0013449899126	2
gaa	gaa	0.0006724949563	1
cca	cca	0.0006724949563	1
ttt	ttt	0.0006724949563	1
tcg	tcg	0.0006724949563	1
cat	cat	0.0006724949563	1
gcg	gcg	0.0006724949563	1
aac	aac	0.0006724949563	1
tta	tta	0.0006724949563	1
act	act	0.0006724949563	1
ctc	ctc	0.0006724949563	1
tgc	tgc	0.0006724949563	1
cac	cac	0.0006724949563	1
ccc	ccc	0.0006724949563	1
; Host name	jolitorax
; Job started	2013-09-30.094250
; Job done	2013-09-30.094251
; Seconds	1.24
;	user	1.24
;	system	0.1
;	cuser	0
;	csystem	0