; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_b799_ensembl_72_GCA_000261385.1/genome/Escherichia_coli_b799_ensembl_72_GCA_000261385.1_stop_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_b799_ensembl_72_GCA_000261385.1/genome/Escherichia_coli_b799_ensembl_72_GCA_000261385.1_stop_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Escherichia_coli_b799_ensembl_72_GCA_000261385.1/genome/Escherichia_coli_b799_ensembl_72_GCA_000261385.1_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Escherichia_coli_b799_ensembl_72_GCA_000261385.1/genome/Escherichia_coli_b799_ensembl_72_GCA_000261385.1_stop_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 97 ; Sum of sequence lengths 291 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 97 ; total oligo occurrences 97 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; Sequences: ; EIG41032|supercontig:GCA_000261385.1:JH768581:1:2010:1|2008|2010|D 3 ; EIG41031|supercontig:GCA_000261385.1:JH768581:1:2010:1|922|924|D 3 ; EIG41147|supercontig:GCA_000261385.1:JH768577:1:49713:1|17121|17123|R 3 ; EIG41179|supercontig:GCA_000261385.1:JH768577:1:49713:1|35587|35589|R 3 ; EIG41136|supercontig:GCA_000261385.1:JH768577:1:49713:1|8797|8799|R 3 ; EIG41158|supercontig:GCA_000261385.1:JH768577:1:49713:1|22456|22458|R 3 ; EIG41193|supercontig:GCA_000261385.1:JH768577:1:49713:1|47581|47583|R 3 ; EIG41124|supercontig:GCA_000261385.1:JH768577:1:49713:1|1|3|R 3 ; EIG41176|supercontig:GCA_000261385.1:JH768577:1:49713:1|34408|34410|R 3 ; EIG41140|supercontig:GCA_000261385.1:JH768577:1:49713:1|12609|12611|R 3 ; EIG41149|supercontig:GCA_000261385.1:JH768577:1:49713:1|18768|18770|R 3 ; EIG41133|supercontig:GCA_000261385.1:JH768577:1:49713:1|5776|5778|R 3 ; EIG41186|supercontig:GCA_000261385.1:JH768577:1:49713:1|40997|40999|R 3 ; EIG41182|supercontig:GCA_000261385.1:JH768577:1:49713:1|37397|37399|R 3 ; EIG41185|supercontig:GCA_000261385.1:JH768577:1:49713:1|40466|40468|R 3 ; EIG41160|supercontig:GCA_000261385.1:JH768577:1:49713:1|23507|23509|R 3 ; EIG41153|supercontig:GCA_000261385.1:JH768577:1:49713:1|20442|20444|R 3 ; EIG41135|supercontig:GCA_000261385.1:JH768577:1:49713:1|7226|7228|R 3 ; EIG41128|supercontig:GCA_000261385.1:JH768577:1:49713:1|3202|3204|R 3 ; EIG41137|supercontig:GCA_000261385.1:JH768577:1:49713:1|9048|9050|R 3 ; EIG41180|supercontig:GCA_000261385.1:JH768577:1:49713:1|36179|36181|R 3 ; EIG41166|supercontig:GCA_000261385.1:JH768577:1:49713:1|26448|26450|R 3 ; EIG41191|supercontig:GCA_000261385.1:JH768577:1:49713:1|45756|45758|R 3 ; EIG41162|supercontig:GCA_000261385.1:JH768577:1:49713:1|25104|25106|R 3 ; EIG41189|supercontig:GCA_000261385.1:JH768577:1:49713:1|44975|44977|R 3 ; EIG41178|supercontig:GCA_000261385.1:JH768577:1:49713:1|35288|35290|R 3 ; EIG41177|supercontig:GCA_000261385.1:JH768577:1:49713:1|34744|34746|R 3 ; EIG41150|supercontig:GCA_000261385.1:JH768577:1:49713:1|19043|19045|R 3 ; EIG41161|supercontig:GCA_000261385.1:JH768577:1:49713:1|23866|23868|R 3 ; EIG41187|supercontig:GCA_000261385.1:JH768577:1:49713:1|43280|43282|R 3 ; EIG41169|supercontig:GCA_000261385.1:JH768577:1:49713:1|28749|28751|D 3 ; EIG41181|supercontig:GCA_000261385.1:JH768577:1:49713:1|36466|36468|R 3 ; EIG41142|supercontig:GCA_000261385.1:JH768577:1:49713:1|14718|14720|R 3 ; EIG41132|supercontig:GCA_000261385.1:JH768577:1:49713:1|4712|4714|R 3 ; EIG41164|supercontig:GCA_000261385.1:JH768577:1:49713:1|25814|25816|R 3 ; EIG41143|supercontig:GCA_000261385.1:JH768577:1:49713:1|15576|15578|R 3 ; EIG41190|supercontig:GCA_000261385.1:JH768577:1:49713:1|45292|45294|R 3 ; EIG41141|supercontig:GCA_000261385.1:JH768577:1:49713:1|13345|13347|R 3 ; EIG41155|supercontig:GCA_000261385.1:JH768577:1:49713:1|21077|21079|R 3 ; EIG41188|supercontig:GCA_000261385.1:JH768577:1:49713:1|43854|43856|R 3 ; EIG41156|supercontig:GCA_000261385.1:JH768577:1:49713:1|21499|21501|R 3 ; EIG41183|supercontig:GCA_000261385.1:JH768577:1:49713:1|38561|38563|R 3 ; EIG41152|supercontig:GCA_000261385.1:JH768577:1:49713:1|19855|19857|R 3 ; EIG41171|supercontig:GCA_000261385.1:JH768577:1:49713:1|29845|29847|D 3 ; EIG41170|supercontig:GCA_000261385.1:JH768577:1:49713:1|29553|29555|D 3 ; EIG41184|supercontig:GCA_000261385.1:JH768577:1:49713:1|40435|40437|D 3 ; EIG41125|supercontig:GCA_000261385.1:JH768577:1:49713:1|910|912|R 3 ; EIG41159|supercontig:GCA_000261385.1:JH768577:1:49713:1|23145|23147|R 3 ; EIG41175|supercontig:GCA_000261385.1:JH768577:1:49713:1|33137|33139|R 3 ; EIG41146|supercontig:GCA_000261385.1:JH768577:1:49713:1|16924|16926|R 3 ; EIG41144|supercontig:GCA_000261385.1:JH768577:1:49713:1|16036|16038|R 3 ; EIG41139|supercontig:GCA_000261385.1:JH768577:1:49713:1|11461|11463|R 3 ; EIG41173|supercontig:GCA_000261385.1:JH768577:1:49713:1|31952|31954|D 3 ; EIG41148|supercontig:GCA_000261385.1:JH768577:1:49713:1|17503|17505|R 3 ; EIG41131|supercontig:GCA_000261385.1:JH768577:1:49713:1|4319|4321|R 3 ; EIG41174|supercontig:GCA_000261385.1:JH768577:1:49713:1|33100|33102|D 3 ; EIG41129|supercontig:GCA_000261385.1:JH768577:1:49713:1|3493|3495|R 3 ; EIG41192|supercontig:GCA_000261385.1:JH768577:1:49713:1|46379|46381|R 3 ; EIG41138|supercontig:GCA_000261385.1:JH768577:1:49713:1|10910|10912|R 3 ; EIG41167|supercontig:GCA_000261385.1:JH768577:1:49713:1|26960|26962|R 3 ; EIG41127|supercontig:GCA_000261385.1:JH768577:1:49713:1|1739|1741|R 3 ; EIG41168|supercontig:GCA_000261385.1:JH768577:1:49713:1|28282|28284|D 3 ; EIG41154|supercontig:GCA_000261385.1:JH768577:1:49713:1|20638|20640|R 3 ; EIG41126|supercontig:GCA_000261385.1:JH768577:1:49713:1|1201|1203|R 3 ; EIG41130|supercontig:GCA_000261385.1:JH768577:1:49713:1|3975|3977|R 3 ; EIG41157|supercontig:GCA_000261385.1:JH768577:1:49713:1|22112|22114|R 3 ; EIG41165|supercontig:GCA_000261385.1:JH768577:1:49713:1|26218|26220|R 3 ; EIG41145|supercontig:GCA_000261385.1:JH768577:1:49713:1|16394|16396|R 3 ; EIG41134|supercontig:GCA_000261385.1:JH768577:1:49713:1|6169|6171|R 3 ; EIG41172|supercontig:GCA_000261385.1:JH768577:1:49713:1|30619|30621|R 3 ; EIG41163|supercontig:GCA_000261385.1:JH768577:1:49713:1|25485|25487|R 3 ; EIG41151|supercontig:GCA_000261385.1:JH768577:1:49713:1|19572|19574|R 3 ; EIG41066|supercontig:GCA_000261385.1:JH768579:1:16072:1|13142|13144|D 3 ; EIG41061|supercontig:GCA_000261385.1:JH768579:1:16072:1|8884|8886|D 3 ; EIG41062|supercontig:GCA_000261385.1:JH768579:1:16072:1|9410|9412|D 3 ; EIG41065|supercontig:GCA_000261385.1:JH768579:1:16072:1|12347|12349|D 3 ; EIG41057|supercontig:GCA_000261385.1:JH768579:1:16072:1|3690|3692|D 3 ; EIG41064|supercontig:GCA_000261385.1:JH768579:1:16072:1|11314|11316|D 3 ; EIG41063|supercontig:GCA_000261385.1:JH768579:1:16072:1|10428|10430|D 3 ; EIG41067|supercontig:GCA_000261385.1:JH768579:1:16072:1|13932|13934|D 3 ; EIG41054|supercontig:GCA_000261385.1:JH768579:1:16072:1|1100|1102|D 3 ; EIG41070|supercontig:GCA_000261385.1:JH768579:1:16072:1|16070|16072|D 3 ; EIG41055|supercontig:GCA_000261385.1:JH768579:1:16072:1|1467|1469|R 3 ; EIG41059|supercontig:GCA_000261385.1:JH768579:1:16072:1|5641|5643|D 3 ; EIG41060|supercontig:GCA_000261385.1:JH768579:1:16072:1|8100|8102|D 3 ; EIG41058|supercontig:GCA_000261385.1:JH768579:1:16072:1|5091|5093|D 3 ; EIG41068|supercontig:GCA_000261385.1:JH768579:1:16072:1|14647|14649|D 3 ; EIG41069|supercontig:GCA_000261385.1:JH768579:1:16072:1|15407|15409|D 3 ; EIG41056|supercontig:GCA_000261385.1:JH768579:1:16072:1|3476|3478|D 3 ; EIG41023|supercontig:GCA_000261385.1:JH768582:1:1621:1|1361|1363|D 3 ; EIG41024|supercontig:GCA_000261385.1:JH768582:1:1621:1|1619|1621|D 3 ; EIG41022|supercontig:GCA_000261385.1:JH768582:1:1621:1|499|501|D 3 ; EIG41018|supercontig:GCA_000261385.1:JH768583:1:1159:1|1157|1159|D 3 ; EIG41017|supercontig:GCA_000261385.1:JH768583:1:1159:1|110|112|D 3 ; EIG41040|supercontig:GCA_000261385.1:JH768580:1:4639:1|3586|3588|D 3 ; EIG41042|supercontig:GCA_000261385.1:JH768580:1:4639:1|4637|4639|D 3 ; EIG41041|supercontig:GCA_000261385.1:JH768580:1:4639:1|4324|4326|D 3 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ tga tga 0.4536082474227 44 taa taa 0.4432989690722 43 tag tag 0.0515463917526 5 ggg ggg 0.0103092783505 1 agg agg 0.0103092783505 1 tgg tgg 0.0103092783505 1 cga cga 0.0103092783505 1 gct gct 0.0103092783505 1 ; Host name jolitorax ; Job started 2013-09-30.101646 ; Job done 2013-09-30.101646 ; Seconds 1.06 ; user 1.07 ; system 0.08 ; cuser 0 ; csystem 0