; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2/genome/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2_start_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2/genome/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2_start_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2/genome/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2/genome/Escherichia_coli_bl21_de3_asm2266v1_ensembl_72_GCA_000022665.2_start_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 4159 ; Sum of sequence lengths 12477 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 4159 ; total oligo occurrences 4159 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.8809810050493 3664 gtg gtg 0.0944938687184 393 ttg ttg 0.0238037989901 99 ctg ctg 0.0007213272421 3 ; Host name jolitorax ; Job started 2013-09-30.103554 ; Job done 2013-09-30.103555 ; Seconds 1.64 ; user 1.64 ; system 0.07 ; cuser 0 ; csystem 0