; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1/genome/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1_start_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1/genome/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1/genome/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1/genome/Escherichia_coli_chi7122_ensembl_72_GCA_000307205.1_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	4598
; Sum of sequence lengths      	13794
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	4598
; total oligo occurrences      	4598
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.8336233144846	3833
gtg	gtg	0.1246193997390	573
ttg	ttg	0.0304480208786	140
ctg	ctg	0.0034797738147	16
tta	tta	0.0008699434537	4
gtc	gtc	0.0008699434537	4
gta	gta	0.0008699434537	4
ata	ata	0.0008699434537	4
gtt	gtt	0.0008699434537	4
ctt	ctt	0.0006524575903	3
ctc	ctc	0.0004349717268	2
att	att	0.0002174858634	1
gat	gat	0.0002174858634	1
ggt	ggt	0.0002174858634	1
cag	cag	0.0002174858634	1
act	act	0.0002174858634	1
cgt	cgt	0.0002174858634	1
tac	tac	0.0002174858634	1
cta	cta	0.0002174858634	1
atc	atc	0.0002174858634	1
aca	aca	0.0002174858634	1
agt	agt	0.0002174858634	1
; Host name	jolitorax
; Job started	2013-09-30.111919
; Job done	2013-09-30.111920
; Seconds	1.72
;	user	1.72
;	system	0.09
;	cuser	0
;	csystem	0.01