; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1/genome/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1_start_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1/genome/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1/genome/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1/genome/Escherichia_coli_epeca12_ensembl_72_GCA_000268125.1_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	5366
; Sum of sequence lengths      	16098
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	5366
; total oligo occurrences      	5366
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.8335818114051	4473
gtg	gtg	0.1136787178531	610
ttg	ttg	0.0473350726798	254
acc	acc	0.0003727171077	2
cat	cat	0.0003727171077	2
aaa	aaa	0.0003727171077	2
cct	cct	0.0003727171077	2
agt	agt	0.0003727171077	2
ggc	ggc	0.0001863585539	1
gaa	gaa	0.0001863585539	1
att	att	0.0001863585539	1
ctg	ctg	0.0001863585539	1
ccg	ccg	0.0001863585539	1
gat	gat	0.0001863585539	1
cgc	cgc	0.0001863585539	1
cag	cag	0.0001863585539	1
gag	gag	0.0001863585539	1
gcg	gcg	0.0001863585539	1
gct	gct	0.0001863585539	1
ctc	ctc	0.0001863585539	1
aag	aag	0.0001863585539	1
aga	aga	0.0001863585539	1
tac	tac	0.0001863585539	1
cga	cga	0.0001863585539	1
gga	gga	0.0001863585539	1
ccc	ccc	0.0001863585539	1
tat	tat	0.0001863585539	1
; Host name	jolitorax
; Job started	2013-10-01.014352
; Job done	2013-10-01.014353
; Seconds	1.83
;	user	1.83
;	system	0.08
;	cuser	0
;	csystem	0