; oligo-analysis  -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1/genome/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1_start_codons.wc -o $RSAT/public_html/data/genomes/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1/genome/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Oligomer length              	3
; Input file                   	$RSAT/public_html/data/genomes/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1/genome/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/public_html/data/genomes/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1/genome/Escherichia_coli_frik1996_ensembl_72_GCA_000267505.1_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	3308
; Sum of sequence lengths      	9924
; discarded residues           		 (other letters than ACGT)
; discarded occurrences        		 (contain discarded residues)
; nb possible positions        	3308
; total oligo occurrences      	3308
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.7847642079807	2596
gtg	gtg	0.1236396614268	409
ttg	ttg	0.0438331318017	145
gat	gat	0.0048367593712	16
cag	cag	0.0027206771463	9
att	att	0.0024183796856	8
gaa	gaa	0.0021160822249	7
ttt	ttt	0.0018137847642	6
aac	aac	0.0018137847642	6
gcc	gcc	0.0018137847642	6
aat	aat	0.0015114873035	5
tgg	tgg	0.0015114873035	5
ccg	ccg	0.0015114873035	5
acc	acc	0.0015114873035	5
tat	tat	0.0015114873035	5
ctt	ctt	0.0012091898428	4
ctg	ctg	0.0012091898428	4
cgc	cgc	0.0012091898428	4
gac	gac	0.0012091898428	4
ggg	ggg	0.0012091898428	4
gag	gag	0.0012091898428	4
cat	cat	0.0012091898428	4
aaa	aaa	0.0012091898428	4
atc	atc	0.0012091898428	4
tta	tta	0.0009068923821	3
gct	gct	0.0009068923821	3
tgc	tgc	0.0009068923821	3
gtc	gtc	0.0009068923821	3
aag	aag	0.0009068923821	3
gcg	gcg	0.0006045949214	2
caa	caa	0.0006045949214	2
tac	tac	0.0006045949214	2
gta	gta	0.0006045949214	2
aca	aca	0.0006045949214	2
ggc	ggc	0.0006045949214	2
tcc	tcc	0.0006045949214	2
act	act	0.0006045949214	2
ttc	ttc	0.0003022974607	1
agg	agg	0.0003022974607	1
tcg	tcg	0.0003022974607	1
aga	aga	0.0003022974607	1
tca	tca	0.0003022974607	1
gtt	gtt	0.0003022974607	1
cac	cac	0.0003022974607	1
agc	agc	0.0003022974607	1
; Host name	jolitorax
; Job started	2013-10-01.030356
; Job done	2013-10-01.030356
; Seconds	1.56
;	user	1.56
;	system	0.08
;	cuser	0
;	csystem	0