-- dump date   	20120504_144630
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004342850.1	COGs: COG0593 ATPase involved in DNA replication initiation; HAMAP: Chromosomal replication control, initiator DnaA; InterPro IPR013317:IPR013159:IPR001957:IPR003593; KEGG: fbc:FB2170_13478 chromosomal replication initiation protein; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: Chromosomal replication control, initiator DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_004342852.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: fbc:FB2170_03590 hypothetical protein; PFAM: Peptidase S41; SMART: Peptidase S41; SPTR: Peptidase S41; PFAM: Peptidase S41
YP_004342854.1	COGs: COG1739 conserved hypothetical protein; InterPro IPR001498; KEGG: fbc:FB2170_13468 hypothetical protein; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family
YP_004342855.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: chu:CHU_0067 aminopeptidase; PFAM: Peptidase M42; SPTR: Aminopeptidase, M42 family; PFAM: M42 glutamyl aminopeptidase
YP_004342856.1	KEGG: cth:Cthe_0663 hypothetical protein; SPTR:  uncharacterized protein
YP_004342857.1	COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: fjo:Fjoh_1396 hypothetical protein; PFAM: HI0933-like protein; SPTR: HI0933 family protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family
YP_004342858.1	InterPro IPR012600:IPR005536; KEGG: pgn:PGN_1970 arginine-specific cysteine proteinase RgpA; PFAM: Propeptide, peptidase C25; Peptidase C25, C-terminal Ig-like domain; PRIAM: Gingipain R; SPTR:  Agmatine deiminase; PFAM: Propeptide_C25; Peptidase C25; Peptidase C25, C terminal ig-like domain
YP_004342859.1	KEGG: rbi:RB2501_07230 hypothetical protein; SPTR:  uncharacterized protein
YP_004342860.1	InterPro IPR011935; KEGG: chu:CHU_0319 mucoidy inhibitor-like protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02231; TIGRFAM: conserved hypothetical protein
YP_004342861.1	COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845:IPR005846:IPR005843; KEGG: fjo:Fjoh_4504 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004342862.1	COGs: COG0054 Riboflavin synthase beta-chain; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; InterPro IPR002180; KEGG: zpr:ZPR_1456 riboflavin synthase subunit beta; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004342863.1	KEGG: pdi:BDI_0201 TPR domain-containing protein; SPTR:  uncharacterized protein
YP_004342864.1	KEGG: chu:CHU_1608 hypothetical protein; SPTR:  uncharacterized protein
YP_004342865.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910; KEGG: pdi:BDI_3417  vitamin B12 receptor; PFAM: TonB-dependent receptor, plug; SPTR: Outer membrane vitamin B12 receptor protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004342866.1	InterPro IPR011964; KEGG: bth:BT_1490  surface protein; SPTR:  uncharacterized protein; TIGRFAM: YVTN beta-propeller repeat; TIGRFAM: 40-residue YVTN family beta-propeller repeat
YP_004342867.1	KEGG: chu:CHU_1608 hypothetical protein; SPTR:  uncharacterized protein
YP_004342868.1	COGs: COG1510 transcriptional regulator protein; KEGG: cpi:Cpin_7088 conserved hypothetical protein; transcriptional regulatory protein; SPTR: Arsr family transcriptional regulator
YP_004342869.1	KEGG: sli:Slin_3599 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF393
YP_004342870.1	KEGG: lci:LCK_00690 TPR repeat-containing protein; SPTR:  uncharacterized protein
YP_004342871.1	InterPro IPR000601; KEGG: cpi:Cpin_2904 hypothetical protein; PFAM: PKD; SPTR: CHU large protein; uncharacterized
YP_004342872.1	COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR:  uncharacterized protein; PFAM: DUF218 domain
YP_004342873.1	KEGG: coc:Coch_0045 hypothetical protein; SPTR:  uncharacterized protein
YP_004342874.1	KEGG: esi:Exig_2061 4-phytase; SPTR: 4-phytase
YP_004342875.1	COGs: COG0623 Enoyl-(acyl-carrier-protein); KEGG: phe:Phep_1138 enoyl-(acyl-carrier-protein) reductase (NADH); PRIAM: Enoyl-[acyl-carrier-protein] reductase (NADH); SPTR: Enoyl-(Acyl-carrier-protein) reductase (NADH)
YP_004342876.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: chu:CHU_2787 metal-dependent hydrolase; SPTR: Lipoate-protein ligase B; PFAM: Metallo-beta-lactamase superfamily
YP_004342877.1	COGs: COG2363 Uncharacterized small membrane protein; InterPro IPR006696; KEGG: ser:SERP0230 hypothetical protein; PFAM: Protein of unknown function DUF423; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF423)
YP_004342878.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR003395:IPR004604; KEGG: zpr:ZPR_3243 DNA repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA repair protein; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_004342879.1	KEGG: pdi:BDI_0698 hypothetical protein; SPTR:  uncharacterized protein
YP_004342880.1	COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR003382:IPR007085:IPR005252; KEGG: zpr:ZPR_3245 coenzyme A biosynthesis bifunctional protein CoaBC; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: Coenzyme A biosynthesis bifunctional protein CoaBC; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_004342881.1	KEGG: bvu:BVU_3042 hypothetical protein; SPTR:  uncharacterized protein; PFAM: RNA polymerase Rpb6
YP_004342882.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: fps:FP1837 lipoprotein; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_004342883.1	KEGG: wpi:WPa_0272 patatin family protein; SPTR: Patatin family protein
YP_004342884.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047:IPR018392:IPR002482; KEGG: aps:CFPG_119 M23 family peptidase; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Membrane proteins related to metalloendopeptidases; PFAM: Peptidase M23; LysM domain
YP_004342885.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: cag:Cagg_2646 peptidylprolyl isomerase FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004342886.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: rbi:RB2501_11232 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004342887.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: chu:CHU_2395 hypothetical protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR:  uncharacterized protein; PFAM: DHH family; DHHA1 domain
YP_004342888.1	KEGG: dac:Daci_1331 hypothetical protein; SPTR:  uncharacterized protein
YP_004342889.1	KEGG: clj:CLJU_c21430  methyl-accepting chemotaxis protein; SPTR:  uncharacterized protein
YP_004342890.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; HAMAP: Dihydrodipicolinate synthase; InterPro IPR002220:IPR005263; KEGG: phe:Phep_3319 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; SPTR:  dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase; TIGRFAM: dihydrodipicolinate synthase
YP_004342891.1	KEGG: ptm:GSPATT00027521001 hypothetical protein; SPTR:  uncharacterized protein
YP_004342892.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); HAMAP: DNA ligase; InterProIPR013839:IPR004150:IPR004149:IPR001357:IPR 001679:IPR013840; KEGG: bvu:BVU_3306 DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; SMART: NAD-dependent DNA ligase, N-terminal; BRCT; SPTR: DNA ligase, NAD-dependent; TIGRFAM: NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent
YP_004342893.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: vfi:VF_A0485 ribosomal large subunit pseudouridine synthase A; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004342894.1	InterPro IPR018967:IPR006622; KEGG: sli:Slin_1437 protein of unknown function DUF1271; PFAM: Iron sulphur-containing domain, CDGSH-type; SPTR:  uncharacterized protein; PFAM: Iron-binding zinc finger CDGSH type; Protein of unknown function (DUF1271)
YP_004342895.1	COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR007848:IPR004556:IPR019874; KEGG: zpr:ZPR_3584 modification methylase HemK; PFAM: Methyltransferase small; SPTR:  uncharacterized protein; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small domain; TIGRFAM: HemK family  methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_004342896.1	InterPro IPR018392:IPR002482; KEGG: amu:Amuc_0821 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Membrane-bound lytic murein transglycosylase D; PFAM: LysM domain
YP_004342897.1	COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: chu:CHU_0754 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; SPTR: Methionine-S-sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_004342898.1	InterPro IPR000866; KEGG: chu:CHU_3043 thioredoxin family protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thioredoxin family protein; PFAM: AhpC/TSA family
YP_004342899.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro IPR001986:IPR005750; KEGG: phe:Phep_1435 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004342900.1	KEGG: phe:Phep_1436 hypothetical protein; SPTR:  uncharacterized protein
YP_004342901.1	KEGG: ngr:NAEGRDRAFT_48650 hypothetical protein; SPTR: Predicted protein
YP_004342902.1	KEGG: cpi:Cpin_0834 hypothetical protein; SPTR:  uncharacterized protein
YP_004342903.1	KEGG: cpi:Cpin_0833 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Predicted membrane protein (DUF2306)
YP_004342904.1	InterPro IPR019734; KEGG: cpi:Cpin_0832 tetratricopeptide domain protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide domain protein; PFAM: Tetratricopeptide repeat
YP_004342905.1	KEGG: fjo:Fjoh_0800 hypothetical protein; SPTR:  uncharacterized protein
YP_004342906.1	KEGG: abb:ABBFA_000178 hypothetical protein; SPTR:  uncharacterized protein
YP_004342907.1	KEGG: pub:SAR11_0854 fumarylacetoacetate (FAA) hydrolase; SPTR:  uncharacterized protein
YP_004342908.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: phe:Phep_0214 penicillinase repressor; PFAM: Penicillinase repressor; SPTR: Probable antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor
YP_004342909.1	InterPro IPR008756:IPR006260; KEGG: dfe:Dfer_3381 TonB family protein; PFAM: Peptidase M56, BlaR1; SPTR: TonB-dependent receptor; TIGRFAM: TonB, C-terminal; PFAM: BlaR1 peptidase M56; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004342910.1	KEGG: cpi:Cpin_3480 hypothetical protein; SPTR:  uncharacterized protein
YP_004342911.1	KEGG: nve:NEMVE_v1g222681 hypothetical protein; SPTR: Predicted protein
YP_004342912.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: cph:Cpha266_1706  transcriptional regulator; PFAM: ATPase, AAA-4; SPTR: Divergent AAA region; PFAM: Divergent AAA domain
YP_004342913.1	COGs: COG1662 Transposase and inactivated derivatives IS1 family; InterPro IPR005063; KEGG: fjo:Fjoh_3611 IS1 transposase; PFAM: Transposase, IS1; SPTR: IS1 transposase; PFAM: IS1 transposase
YP_004342914.1	COGs: COG1612 Uncharacterized protein required for cytochrome oxidase assembly; InterPro IPR003780; KEGG: phe:Phep_0296 cytochrome oxidase assembly; PFAM: Cytochrome oxidase assembly; SPTR: Cytochrome oxidase assembly protein; PFAM: Cytochrome oxidase assembly protein
YP_004342915.1	KEGG: mcp:MCAP_0269  lipoprotein; SPTR: Transmembrane protein
YP_004342916.1	InterPro IPR001732; KEGG: cpi:Cpin_4472 epimerase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; SPTR: NAD dependent epimerase/dehydratase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_004342917.1	KEGG: gfo:GFO_3477 secreted protein; SPTR: Secreted protein
YP_004342918.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004342919.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR011123:IPR010559; KEGG: cpi:Cpin_1400 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; SPTR: Signal transduction histidine kinase, LytS; PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004342920.1	InterPro IPR000601; KEGG: cpi:Cpin_6939 PKD domain containing protein; PFAM: PKD; SPTR: PKD domain containing protein; PFAM: PKD domain
YP_004342921.1	KEGG: mrb:Mrub_2080 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Bacterial-like globin
YP_004342922.1	KEGG: chu:CHU_1070 hypothetical protein; SPTR:  uncharacterized protein
YP_004342923.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: cpi:Cpin_0426 carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein; SPTR: Carbonic anhydrase/acetyltransferase isoleucine patch superfamily-like protein
YP_004342924.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: bba:Bd2516 redox-sensitive transcriptional activator; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_004342925.1	COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: fjo:Fjoh_4766 ferritin, Dps family protein; PFAM: Ferritin/Dps protein; SPTR: DNA-binding DPS protein; PFAM: Ferritin-like domain
YP_004342926.1	COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: zpr:ZPR_2854 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxiredoxin; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004342927.1	InterPro IPR013766; KEGG: phe:Phep_4265 thioredoxin domain protein; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain protein; PFAM: Thioredoxin
YP_004342928.1	KEGG: coc:Coch_0769 hypothetical protein; SPTR:  uncharacterized protein
YP_004342929.1	COGs: COG1278 Cold shock protein; InterPro IPR002059:IPR011129; KEGG: chu:CHU_0962 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding protein family; PFAM: 'Cold-shock' DNA-binding domain
YP_004342930.1	COGs: COG1278 Cold shock protein; InterPro IPR002059:IPR011129; KEGG: fbc:FB2170_01856 cold shock protein-like CspA family; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004342931.1	COGs: COG4675 Microcystin-dependent protein; InterPro IPR011083; KEGG: chu:CHU_2872 microcystin dependent; PFAM: Phage tail collar; SPTR:  uncharacterized protein; PFAM: Phage Tail Collar Domain
YP_004342932.1	COGs: COG4675 Microcystin-dependent protein; InterPro IPR011083; KEGG: aav:Aave_1917 phage tail collar domain-containing protein; PFAM: Phage tail collar; SPTR: Phage Tail Collar domain protein; PFAM: Phage Tail Collar Domain
YP_004342933.1	KEGG: chu:CHU_2871 ABC transporter substrate-binding protein; SPTR:  uncharacterized protein
YP_004342934.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793; KEGG: fjo:Fjoh_4050 formyl transferase domain-containing protein; PFAM: Formyl transferase, C-terminal; Formyl transferase, N-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Formyl transferase domain protein; PFAM: Formyl transferase; Formyl transferase, C-terminal domain
YP_004342935.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004342936.1	COGs: COG0457 FOG: TPR repeat; InterPro IPR001440:IPR019734; KEGG: sli:Slin_6633 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004342937.1	KEGG: kva:Kvar_0115 ABC-2 type transporter; SPTR: Antibiotic transport system permease
YP_004342938.1	KEGG: cpi:Cpin_2395 hypothetical protein; SPTR:  uncharacterized protein
YP_004342939.1	COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: sli:Slin_6512 transcriptional regulator, PadR-like family; PFAM: Transcription regulator PadR N-terminal-like; SPTR: Conserved protein; PFAM: Transcriptional regulator PadR-like family
YP_004342940.1	KEGG: rbi:RB2501_05050 ArsR family regulatory protein; SPTR: Transcriptional regulator, ArsR family protein
YP_004342941.1	KEGG: hth:HTH_1035 ABC-type transporter permease component; SPTR:  uncharacterized protein
YP_004342942.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_1116 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004342943.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: cyn:Cyan7425_2000 alcohol dehydrogenase zinc-binding domain protein; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase
YP_004342944.1	KEGG: sli:Slin_2769 glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/Bleomycin resistance protein/Dioxygenase
YP_004342945.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR006076:IPR014105; KEGG: cts:Ctha_0974 phytoene desaturase; PFAM: Amine oxidase; FAD dependent oxidoreductase; SPTR: Gamma-carotene desaturase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase
YP_004342946.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: fjo:Fjoh_2735 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004342947.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: fjo:Fjoh_2734 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004342948.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fjo:Fjoh_2733 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004342949.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: fjo:Fjoh_2732 RND family efflux transporter MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004342950.1	COGs: COG3696  silver efflux pump; InterPro IPR001036:IPR004763; KEGG: fjo:Fjoh_2731 CzcA family heavy metal efflux protein; PFAM: Acriflavin resistance protein; SPTR: Heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004342951.1	InterPro IPR003343:IPR000601; KEGG: fps:FP0595 hypothetical protein; PFAM: Bacterial Ig-like, group 2; PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2); PKD domain
YP_004342952.1	KEGG: ddi:DDB_G0287657 alpha,alpha-trehalose-phosphate synthase; SPTR: Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A
YP_004342953.1	InterPro IPR013216; KEGG: swd:Swoo_1969 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004342954.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR002986; KEGG: coc:Coch_2136 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; PRIAM: Diaminopimelate decarboxylase; SPTR: Diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_004342955.1	InterPro IPR011935; KEGG: chu:CHU_0319 mucoidy inhibitor-like protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02231; TIGRFAM: conserved hypothetical protein
YP_004342956.1	InterPro IPR001220; KEGG: dal:Dalk_1213 conserved repeat domain protein; PFAM: Legume lectin, beta chain; SPTR: Conserved repeat domain protein; PFAM: Legume lectin domain
YP_004342957.1	COGs: COG1609 Transcriptional regulators; InterPro IPR000843:IPR001761; KEGG: dfe:Dfer_1009 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; SPTR: Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, lacI family; family
YP_004342958.1	COGs: COG0061 sugar kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; InterPro IPR002504; KEGG: fps:FP2093 inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase
YP_004342959.1	InterPro IPR000644; KEGG: phe:Phep_0982 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SPTR: CBS domain containing protein; PFAM: CBS domain
YP_004342960.1	KEGG: phe:Phep_1057 hypothetical protein; SPTR:  uncharacterized protein
YP_004342961.1	KEGG: fjo:Fjoh_0249 TonB-dependent receptor; SPTR: Plectrovirus spv1-r8a2b orf 1 n-terminal and c-terminal truncated protein
YP_004342962.1	KEGG: fps:FP1830 hypothetical protein; SPTR: CHU large protein
YP_004342963.1	KEGG: swo:Swol_0403  integral membrane transport protein; SPTR:  integral membrane transport protein
YP_004342964.1	KEGG: hmg:100212854 similar to Zinc metalloproteinase nas-4; SPTR: Structural polyprotein
YP_004342965.1	InterPro IPR003848; KEGG: dfe:Dfer_5793 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR:  uncharacterized protein; PFAM: DUF218 domain
YP_004342966.1	COGs: COG0854 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; InterPro IPR004569; KEGG: pgi:PG0630 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_004342967.1	KEGG: fps:FP2353 membrane-associated esterase; SPTR: Probable membrane-associated esterase
YP_004342968.1	KEGG: dra:DR_1250 hypothetical protein; SPTR:  uncharacterized protein
YP_004342969.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_2558 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004342970.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR000089:IPR006143; KEGG: sli:Slin_2818 efflux transporter, RND family, MFP subunit; PFAM: Biotin/lipoyl attachment; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004342971.1	COGs: COG1538 Outer membrane protein; KEGG: sli:Slin_2819 outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004342972.1	InterPro IPR001647; KEGG: dfe:Dfer_2561 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004342973.1	KEGG: rsq:Rsph17025_3920 hypothetical protein; SPTR:  uncharacterized protein
YP_004342974.1	InterPro IPR000620; KEGG: syw:SYNW1037 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR:  uncharacterized protein; PFAM: EamA-like transporter family
YP_004342975.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4278 hypothetical protein; PFAM: Protein of unknown function DUF58; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004342976.1	KEGG: zpr:ZPR_4462 hypothetical protein; SPTR:  uncharacterized protein
YP_004342977.1	KEGG: cat:CA2559_12868 hypothetical protein; SPTR:  uncharacterized protein
YP_004342978.1	InterPro IPR003088; KEGG: fjo:Fjoh_2192 hypothetical protein; PFAM: Cytochrome c, class I; SPTR: Hypothetical lipoprotein
YP_004342979.1	KEGG: cpi:Cpin_2053 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004342980.1	COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: fps:FP0583 hypothetical protein; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: Probable cobalamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_004342981.1	KEGG: dfe:Dfer_3979 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2795)
YP_004342982.1	KEGG: kla:KLLA0D17358g hypothetical protein; SPTR: KLLA0D17358p
YP_004342983.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_0982 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004342984.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036:IPR004764; KEGG: chu:CHU_2860 acridine efflux pump; PFAM: Acriflavin resistance protein; SPTR: Acridine efflux pump; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004342985.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423:IPR010131; KEGG: zpr:ZPR_1960 outer membrane efflux family protein; PFAM: Outer membrane efflux protein; SPTR: NodT family RND efflux system; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_004342986.1	KEGG: cyt:cce_5091 hemolysin-type calcium-binding protein; SPTR: Na-Ca exchanger/integrin-beta4
YP_004342987.1	KEGG: pfs:PFLU5689 rhamnosyltransferase 1 subunit A; SPTR: Rhamnosyltransferase 1 subunit A
YP_004342988.1	KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004342989.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); KEGG: gau:GAU_1229 hypothetical protein; SPTR: Short chain dehydrogenase/reductase oxidoreductase; PFAM: short chain dehydrogenase
YP_004342990.1	COGs: COG2454 conserved hypothetical protein; InterPro IPR007368; KEGG: cpi:Cpin_5613 protein of unknown function DUF434; PFAM: Protein of unknown function DUF434; SPTR: Uncharacterized conserved protein, ; PFAM: Protein of unknown function (DUF434)
YP_004342991.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR002917:IPR013029:IPR004396; KEGG: coc:Coch_0099 GTP-dependent nucleic acid-binding protein EngD; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; SPTR: GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_004342992.1	KEGG: fps:FP1763 serine endopeptidase; SPTR: Beta-glucanase
YP_004342993.1	KEGG: mho:MHO_5120 topoisomerase IV subunit A; SPTR: Topoisomerase IV subunit A
YP_004342994.1	KEGG: mif:Metin_0759 amino acid permease-associated region; SPTR: Amino acid permease-associated region
YP_004342995.1	KEGG: vcj:VCD_001674 manganese superoxide dismutase; SPTR:  uncharacterized protein
YP_004342996.1	KEGG: iho:Igni_0806 hypothetical protein; SPTR:  TonB-dependent receptor
YP_004342997.1	KEGG: pmh:P9215_17631 translation initiation factor IF-2; SPTR: Translation initiation factor IF-2
YP_004342998.1	KEGG: pbe:PB000576.00.0 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004342999.1	KEGG: cpi:Cpin_5424 fatty acid desaturase; SPTR:  uncharacterized protein; PFAM: Fatty acid desaturase
YP_004343000.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: sli:Slin_6038 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase M28
YP_004343001.1	KEGG: fbc:FB2170_10811 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF664)
YP_004343002.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: zpr:ZPR_2344 aminocarboxylic acid CoA-ligase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 2-amino-3-ketobutyrate CoA ligase (Glycine acetyltransferase); PFAM: Aminotransferase class I and II
YP_004343003.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495; KEGG: cpi:Cpin_4851 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; SPTR: Signal transduction histidine kinase; PFAM: Histidine kinase
YP_004343004.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: gfo:GFO_2801 hypothetical protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR:  uncharacterized protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004343005.1	InterPro IPR013216; KEGG: fjo:Fjoh_1512 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004343006.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: phe:Phep_0455 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Redox protein; PFAM: OsmC-like protein
YP_004343007.1	COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: gfo:GFO_2102 HPP family protein; PFAM: HPP; SPTR: HPP family protein; PFAM: HPP family
YP_004343008.1	KEGG: btb:BMB171_C1005 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Bacterial RNA polymerase, alpha chain C terminal domain
YP_004343009.1	COGs: COG5646 conserved hypothetical protein; InterPro IPR014922; KEGG: mpl:Mpal_1109 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: Protein of hypothetical function DUF1801; PFAM: Domain of unknown function (DU1801)
YP_004343010.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: cat:CA2559_02435 peptidase M1 family protein; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Peptidase M1 family protein; PFAM: Peptidase M1
YP_004343011.1	COGs: COG1853 Conserved protein/domain typically associated with flavoprotein oxygenase DIM6/NTAB family; InterPro IPR002563; KEGG: gfo:GFO_3044 hypothetical protein; PFAM: Flavin reductase-like, FMN-binding; SPTR:  uncharacterized protein; PFAM: Flavin reductase like domain
YP_004343012.1	KEGG: fjo:Fjoh_1594 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3127)
YP_004343013.1	KEGG: lbl:LBL_0852 hypothetical protein; SPTR:  uncharacterized protein
YP_004343014.1	KEGG: zpr:ZPR_1345 hypothetical protein; SPTR:  uncharacterized protein
YP_004343016.1	KEGG: dfe:Dfer_0302 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2874)
YP_004343017.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: zpr:ZPR_4299 transmembrane family-2 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: B-glycosyltransferase-related protein, glycosyltransferase 2 protein; PFAM: Glycosyl transferase 2
YP_004343018.1	KEGG: fjo:Fjoh_1378 hypothetical protein; SPTR:  uncharacterized protein
YP_004343019.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; HAMAP: Crossover junction endodeoxyribonuclease RuvC; InterPro IPR002176; KEGG: chu:CHU_2183 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease ruvC; TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_004343020.1	KEGG: bra:BRADO2829 hypothetical protein; SPTR: Mucin-5B
YP_004343021.1	KEGG: fbc:FB2170_07764 hypothetical protein; SPTR:  uncharacterized protein
YP_004343022.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: phe:Phep_3229 dihydroorotase; PFAM: Amidohydrolase 1; PRIAM: Allantoinase; SPTR: Possible dihydroorotase; PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004343023.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: bfr:BF3128 dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Glycosyl transferase, group 2 family; PFAM: Glycosyl transferase 2
YP_004343024.1	KEGG: kko:Kkor_2439 Na-Ca exchanger/integrin-beta4; SPTR: Na-Ca exchanger/integrin-beta4
YP_004343025.1	KEGG: fba:FIC_00610 hypothetical protein; SPTR:  uncharacterized protein
YP_004343026.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: phe:Phep_3046 regulatory protein RecX; PFAM: Regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family
YP_004343027.1	COGs: COG1530 Ribonuclease G and E; InterPro IPR003029:IPR019307:IPR004659; KEGG: phe:Phep_0126 ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; PRIAM: Ribonuclease E; SPTR: Ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_004343028.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: cat:CA2559_02675 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein
YP_004343029.1	COGs: COG1194 A/G-specific DNA glycosylase; InterPro IPR003265:IPR003651:IPR005760; KEGG: pmz:HMPREF0659_A5412 A/G-specific adenine glycosylase; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; SMART: HhH-GPD domain; SPTR: A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase
YP_004343030.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: aat:D11S_0456 single-stranded DNA-binding protein (ssb) (helix-destabilizingprotein); PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004343031.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170:IPR019862; KEGG: fbc:FB2170_07479  transmembrane CorC/HlyC family transporter associated protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; SPTR:  transmembrane CorC/HlyC family transporter associated protein; TIGRFAM: Gliding motility-associated protein GldE; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain; TIGRFAM: gliding motility-associated protein GldE
YP_004343032.1	KEGG: fjo:Fjoh_1540 hypothetical protein; SPTR: Gliding motility-associated lipoprotein GldD; TIGRFAM: gliding motility-associated lipoprotein GldD
YP_004343033.1	InterPro IPR000834:IPR008757; KEGG: bba:Bd3234 carboxypeptidase T precursor; PFAM: Peptidase M14, carboxypeptidase A; Peptidase M6, immune inhibitor A; PRIAM: Carboxypeptidase T; SMART: Peptidase M14, carboxypeptidase A; SPTR: Carboxypeptidase T; PFAM: Zinc carboxypeptidase; Immune inhibitor A peptidase M6
YP_004343034.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: fps:FP1411 sugar O-acetyltransferase precursor; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Probable sugar O-acetyltransferase; PFAM: MBOAT family
YP_004343035.1	KEGG: cbl:CLK_2087 hypothetical protein; SPTR:  uncharacterized protein
YP_004343036.1	KEGG: fbc:FB2170_00655 hypothetical protein; SPTR:  uncharacterized protein
YP_004343037.1	KEGG: lic:LIC10676 heme exporter protein B; SPTR:  uncharacterized protein
YP_004343038.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: bvu:BVU_2088 hypothetical protein; PFAM: ATPase, AAA-4; SPTR:  uncharacterized protein; PFAM: Divergent AAA domain
YP_004343039.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708:IPR006151; KEGG: cat:CA2559_06730 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; PRIAM: Shikimate dehydrogenase; SPTR: Shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase
YP_004343040.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: fba:FIC_01157 DedA protein; PFAM: SNARE associated Golgi protein; SPTR: DedA protein; PFAM: SNARE associated Golgi protein
YP_004343041.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: chu:CHU_2634 NADH oxidase/rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese-domain protein; PFAM: Rhodanese-like domain
YP_004343042.1	KEGG: lpa:lpa_00602  protein, possibly involved in aromatic compounds catabolism; SPTR:  uncharacterized protein; manually curated
YP_004343043.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: bba:Bd2156 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase
YP_004343045.1	KEGG: chu:CHU_1610 hypothetical protein; SPTR:  uncharacterized protein
YP_004343046.1	COGs: COG1575 1 4-dihydroxy-2-naphthoate octaprenyltransferase; InterPro IPR000537:IPR004657; KEGG: zpr:ZPR_3065 1,4-dihydroxy-2-naphthoateoctaprenyltransferase; PFAM: UbiA prenyltransferase; SPTR:1,4-dihydroxy-2-naphthoateoctaprenyltransferas e; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase
YP_004343047.1	COGs: COG4948 L-alanine-DL-glutamate epimerase; InterPro IPR013342; KEGG: gfo:GFO_2310 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; SPTR: Chloromuconate cycloisomerase; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase
YP_004343048.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: fbc:FB2170_06960 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase
YP_004343049.1	KEGG: afm:AFUA_2G15240 small oligopeptide transporter, OPT family; SPTR: Small oligopeptide transporter, OPT family
YP_004343050.1	InterPro IPR007712; KEGG: cch:Cag_1051 hypothetical protein; PFAM: Plasmid stabilisation system; SPTR:  uncharacterized protein; PFAM: Plasmid stabilisation system protein
YP_004343051.1	KEGG: pfa:PF14_0537 conserved Plasmodium protein, unknown function; SPTR:  uncharacterized protein
YP_004343052.1	COGs: COG0443 Molecular chaperone; HAMAP: Chaperone DnaK; InterPro IPR013126:IPR012725; KEGG: pdi:BDI_1997 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: Chaperone DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_004343053.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: fps:FP2126 amino acid-transporting permease; PFAM: Amino acid permease domain; SPTR: Probable amino acid-transporting permease; PFAM: Amino acid permease; TC 2.A.3
YP_004343054.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cpi:Cpin_1651 amino acid permease-associated region; PFAM: Amino acid permease domain; SPTR: Amino acid permease-associated region; PFAM: Amino acid permease; TC 2.A.3
YP_004343055.1	COGs: COG0661 unusual protein kinase; InterPro IPR004147; KEGG: cdl:CDR20291_2636  ubiquinone biosynthesis protein; PFAM: ABC-1; SPTR: Ubiquinone biosynthesis protein AarF, ; PFAM: ABC1 family
YP_004343056.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: chu:CHU_1770 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004343057.1	KEGG: baf:BAPKO_0362 hypothetical protein; SPTR:  uncharacterized protein
YP_004343058.1	COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR018164:IPR012947:IPR003156:IPR002318; KEGG: cat:CA2559_04755 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_004343059.1	KEGG: sli:Slin_4270 hypothetical protein; SPTR:  uncharacterized protein; PFAM: MatE
YP_004343060.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dfe:Dfer_3530 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase
YP_004343061.1	KEGG: afw:Anae109_4434 glycosyl transferase group 1; SPTR: Glycosyl transferase group 1
YP_004343062.1	KEGG: sli:Slin_4260 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF115
YP_004343063.1	KEGG: syp:SYNPCC7002_A0416 hypothetical protein; SPTR:  uncharacterized protein
YP_004343064.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869:IPR020025; KEGG: cat:CA2559_13073 capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR: Capsular polysaccharide biosynthesis protein; TIGRFAM: Pseudaminic acid biosynthesis, PseB; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase
YP_004343065.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR020026; KEGG: gfo:GFO_2027 SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: SpsC-like DegT/DnrJ/EryC1/StrS family aminotransferase; TIGRFAM: Pseudaminic acid biosynthesis, PseC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
YP_004343066.1	COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329:IPR020039; KEGG: cat:CA2559_13063  NeuA; PFAM: Acylneuraminate cytidylyltransferase; SPTR:  NeuA; TIGRFAM: Pseudaminic acid biosynthesis, PseF; PFAM: Cytidylyltransferase; TIGRFAM: pseudaminic acid CMP-transferase
YP_004343067.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: dsa:Desal_3707 methyltransferase type 12; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 12; PFAM: Methyltransferase domain
YP_004343068.1	KEGG: pcu:pc1569  ribosomal-protein-serine acetyltransferase; SPTR:  uncharacterized protein
YP_004343069.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR003806; KEGG: pcu:pc1568 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; ATP-grasp fold, DUF201-type; SPTR:  uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase; ATP-grasp domain
YP_004343070.1	COGs: COG1011 hydrolase (HAD superfamily); KEGG: pcu:pc1567 hypothetical protein; SPTR:  uncharacterized protein
YP_004343071.1	COGs: COG2089 Sialic acid synthase; InterPro IPR013132:IPR013974:IPR020030; KEGG: gfo:GFO_2016 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; PRIAM: N-acetylneuraminate synthase; SPTR: N-acylneuraminate-9-phosphate synthase; TIGRFAM: Pseudaminic acid biosynthesis, PseI; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase
YP_004343072.1	KEGG: gfo:GFO_1791 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Bacterial membrane protein YfhO
YP_004343073.1	KEGG: tva:TVAG_010170 Ubiquitin family protein; SPTR:  uncharacterized protein
YP_004343074.1	KEGG: tva:TVAG_392380 Ubiquitin family protein; SPTR:  uncharacterized protein
YP_004343075.1	KEGG: bpb:bpr_I0139 hypothetical protein; SPTR:  uncharacterized protein
YP_004343076.1	KEGG: cin:100178320 hypothetical protein LOC100178320; SPTR: C5A peptidase
YP_004343077.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: rbi:RB2501_11212 C4-dicarboxylate transport transcriptional regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: C4-dicarboxylate transport transcriptional regulatory protein; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_004343078.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: cpi:Cpin_5174 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase
YP_004343079.1	COGs: COG1668 ABC-type Na+ efflux pump permease component; InterPro IPR013525; KEGG: zpr:ZPR_3118 ABC-type transporter permease; PFAM: ABC-2 type transporter; SPTR:  uncharacterized protein
YP_004343080.1	COGs: COG4152 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_4965 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004343081.1	InterPro IPR003675; KEGG: gfo:GFO_2309 hypothetical protein; PFAM: Abortive infection protein; SPTR:  uncharacterized protein; PFAM: CAAX amino terminal protease
YP_004343082.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; HAMAP: Chaperone DnaJ; InterPro IPR001623:IPR001305:IPR002939:IPR012724; KEGG: zpr:ZPR_3121 chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ; TIGRFAM: Chaperone DnaJ; PFAM: DnaJ C terminal region; DnaJ central domain (4 repeats); DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_004343083.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); HAMAP: GrpE nucleotide exchange factor; InterPro IPR000740; KEGG: sli:Slin_1520 GrpE protein; PFAM: GrpE nucleotide exchange factor; SPTR: Protein grpE; PFAM: GrpE
YP_004343084.1	KEGG: chu:CHU_3615 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004343085.1	KEGG: chu:CHU_3531 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2874)
YP_004343086.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: chu:CHU_3533 two-component sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Two-component sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004343087.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: gfo:GFO_0824 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004343088.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: phe:Phep_2548 sulfatase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase
YP_004343089.1	COGs: COG0820 Fe-S-cluster redox enzyme; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; InterPro IPR007197:IPR004383; KEGG: dfe:Dfer_4731 radical SAM enzyme, Cfr family; PFAM: Radical SAM; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_004343090.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: zpr:ZPR_3514 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Trans-hexaprenyltranstransferase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004343091.1	InterPro IPR011652; KEGG: mxa:MXAN_4859 MORN repeat-containing protein; PFAM: MORN variant; SPTR: MORN variant repeat protein; PFAM: MORN repeat variant
YP_004343092.1	COGs: COG0358 DNA primase; InterProIPR002694:IPR013264:IPR006171:IPR006295:IPR 006154; KEGG: zpr:ZPR_3825 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; SPTR: DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core
YP_004343093.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: dal:Dalk_2020 MscS mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: Small-conductance mechanosensitive channel; PFAM: Mechanosensitive ion channel
YP_004343094.1	COGs: COG0221 Inorganic pyrophosphatase; InterPro IPR008162; KEGG: dfe:Dfer_5121 inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_004343095.1	KEGG: gfo:GFO_1819 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_004343096.1	InterPro IPR005599; KEGG: cpi:Cpin_6642 Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase; SPTR: Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase
YP_004343097.1	InterPro IPR005599; KEGG: cpi:Cpin_6642 Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase; SPTR: Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase
YP_004343098.1	COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: bfs:BF3393 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_004343099.1	KEGG: saf:SULAZ_0125 MazG family protein; SPTR: MazG family protein
YP_004343100.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789; KEGG: ere:EUBREC_3701 two-component response regulator (extracellular proteinase response regulator); PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain
YP_004343101.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: cpi:Cpin_3325 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; PFAM: YceI-like domain
YP_004343102.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: cpi:Cpin_3326 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; PFAM: YceI-like domain
YP_004343103.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004343104.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: cpi:Cpin_1531 oxidoreductase domain protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase, NAD-binding Rossmann fold
YP_004343105.1	KEGG: pto:PTO0786 oligosaccharyl transferase STT3 subunit; SPTR: Citrate lyase, alpha subunit
YP_004343106.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017475; KEGG: chu:CHU_1927 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Bacterial sugar transferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_004343107.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sta:STHERM_c16550 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR:  dihydroflavonol 4-reductase; PFAM: NAD dependent epimerase/dehydratase
YP_004343108.1	InterPro IPR001104; KEGG: gpb:HDN1F_37270  steroid dehydrogenase; PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; PRIAM: 3-oxo-5-alpha-steroid 4-dehydrogenase; SPTR:  membrane dehydrogenase; PFAM: 3-oxo-5-alpha-steroid 4-dehydrogenase
YP_004343109.1	KEGG: ddi:DDB_G0292358 CHR group protein; SPTR: SNF2-related domain-containing protein
YP_004343110.1	KEGG: cpv:cgd1_2110 protein kinase with WD40 repeat at C-terminus; SPTR:  uncharacterized protein PY00801
YP_004343111.1	COGs: COG4403 Lantibiotic modifying protein; InterPro IPR007822; KEGG: ccb:Clocel_4225 lanthionine synthetase C family protein; PFAM: Lanthionine synthetase C-like; SPTR: Predicted protein
YP_004343112.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792:IPR007848:IPR010280; KEGG: ere:EUBREC_1397 tRNA (uracil-5-) -methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; Methyltransferase small; SPTR: tRNA (Uracil-5-)-methyltransferase; PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_004343113.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: cpi:Cpin_2027 transcriptional regulator, BadM/Rrf2 family; PFAM: Transcription regulator Rrf2; SPTR: Transcriptional regulator, BadM/Rrf2 family protein; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_004343114.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR001451:IPR010137; KEGG: phe:Phep_4278 UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluco samineO-acyltransferase; TIGRFAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_004343115.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; InterPro IPR004463:IPR013114:IPR010084; KEGG: chu:CHU_1037 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: FabA-like domain; UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_004343116.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro IPR020573:IPR001451:IPR007691; KEGG: cat:CA2559_08161 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004343117.1	KEGG: fbc:FB2170_10831 hypothetical protein; SPTR:  uncharacterized protein
YP_004343118.1	COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: phe:Phep_0867 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004343119.1	KEGG: rmr:Rmar_2442 hypothetical protein; SPTR:  uncharacterized protein
YP_004343120.1	KEGG: rbi:RB2501_13664 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF493)
YP_004343121.1	KEGG: mmu:100044068 similar to interferon-inducible Ifi202b; SPTR: Interferon-activable protein 202
YP_004343122.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: chu:CHU_3736 TerC family membrane protein; PFAM: Integral membrane protein TerC; SPTR: Membrane protein, TerC family; PFAM: Integral membrane protein TerC family
YP_004343123.1	COGs: COG1165 2-succinyl-6-hydroxy-2 4-cyclohexadiene-1-carboxylate synthase; HAMAP: Menaquinone biosynthesis protein MenD; InterPro IPR012001:IPR004433; KEGG: cat:CA2559_11118 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acidsynthase/2-oxoglutarate decarboxylase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; PRIAM:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex ene-1-carboxylic-acidsynthase; SPTR:2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexe ne-1-carboxylatesynthase; TIGRFAM: Menaquinone biosynthesis protein MenD; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase
YP_004343124.1	KEGG: mja:MJ_0795 hypothetical protein; SPTR:  uncharacterized protein
YP_004343125.1	COGs: COG1169 Isochorismate synthase; InterPro IPR015890; KEGG: zpr:ZPR_1714 isochorismate synthase; PFAM: Chorismate binding, C-terminal; SPTR: Isochorismate synthase; PFAM: chorismate binding enzyme
YP_004343126.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: rmr:Rmar_1468 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_004343127.1	KEGG: fps:FP0278 hypothetical protein; SPTR:  uncharacterized protein
YP_004343128.1	KEGG: fps:FP1412 sugar O-acetyltransferase precursor; SPTR: Probable sugar O-acetyltransferase
YP_004343129.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: fps:FP1413 sugar O-acetyltransferase precursor; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Probable sugar O-acetyltransferase; PFAM: MBOAT family
YP_004343130.1	InterPro IPR005151; KEGG: ote:Oter_3660 peptidase S41; PFAM: Peptidase S41; SPTR:  uncharacterized protein; PFAM: Peptidase S41
YP_004343131.1	COGs: COG0466 ATP-dependent Lon protease; InterPro IPR003111:IPR003959:IPR004815:IPR003593; KEGG: gfo:GFO_1853 ATP-dependent protease La; PFAM: Peptidase S16, lon N-terminal; ATPase, AAA-type, core; PRIAM: Endopeptidase La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; SPTR: ATP-dependent protease La; TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_004343132.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: dfe:Dfer_0898 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase
YP_004343133.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; KEGG: cpi:Cpin_5272 OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004343134.1	KEGG: pmx:PERMA_1436 hemagglutination activity domain protein; SPTR: Hemagglutination activity domain protein
YP_004343135.1	COGs: COG0292 Ribosomal protein L20; HAMAP: Ribosomal protein L20; InterPro IPR005813; KEGG: sli:Slin_2216 ribosomal protein L20; PFAM: Ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: Ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_004343136.1	HAMAP: Ribosomal protein L35, non-mitochondrial; InterPro IPR021137:IPR001706; KEGG: pdi:BDI_0662 50S ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_004343137.1	COGs: COG0290 Translation initiation factor 3 (IF-3); HAMAP: Translation initiation factor IF-3; InterPro IPR019814:IPR019815:IPR001288; KEGG: pdi:BDI_0661 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; SPTR: Translation initiation factor IF-3; TIGRFAM: Translation initiation factor 3; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_004343138.1	COGs: COG0441 Threonyl-tRNA synthetase; InterProIPR004095:IPR012947:IPR002314:IPR004154:IPR 002320; KEGG: chu:CHU_1643 threonyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; SPTR: Threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_004343139.1	KEGG: aoe:Clos_1132 TRAP dicarboxylate transporter-DctP subunit; SPTR: TRAP dicarboxylate transporter-DctP subunit
YP_004343140.1	KEGG: pop:POPTR_756162 hypothetical protein; SPTR: Lipoprotein
YP_004343141.1	COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: fjo:Fjoh_1425 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein
YP_004343142.1	KEGG: rms:RMA_0119 cell surface antigen Sca2; SPTR:  uncharacterized protein
YP_004343143.1	KEGG: fba:FIC_01564 hypothetical protein; SPTR:  uncharacterized protein
YP_004343144.1	InterPro IPR000620; KEGG: cat:CA2559_02645 predicted permease; PFAM: Protein of unknown function DUF6, transmembrane; SPTR:  uncharacterized protein; PFAM: EamA-like transporter family
YP_004343145.1	KEGG: aca:ACP_1407 RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, permease; SPTR: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family, permease
YP_004343146.1	KEGG: sce:YKL187C  protein of unknown function; the authentic, non-tagged protein is detected in a phosphorylated state in highly purified mitochondria in high-throughput studies; SPTR:  uncharacterized protein
YP_004343147.1	InterPro IPR007139; KEGG: pdi:BDI_2685 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR:  uncharacterized protein; PFAM: Domain of Unknown Function (DUF349)
YP_004343148.1	COGs: COG0524 Sugar kinase ribokinase; InterPro IPR011611; KEGG: chu:CHU_0279 carbohydrate kinase; PFAM: Carbohydrate/purine kinase; SPTR: Probable carbohydrate kinase, PfkB family; PFAM: pfkB family carbohydrate kinase
YP_004343149.1	InterPro IPR001846; KEGG: mau:Micau_1211 von Willebrand factor type D protein; PFAM: von Willebrand factor, type D; SPTR:  transmembrane protein; PFAM: von Willebrand factor type D domain
YP_004343150.1	KEGG: chu:CHU_0208 hypothetical protein; SPTR:  uncharacterized protein
YP_004343151.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: bth:BT_4504 hypothetical protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Membrane protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004343152.1	COGs: COG4276 conserved hypothetical protein; KEGG: chu:CHU_1334 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_004343153.1	InterPro IPR002035; KEGG: coc:Coch_0941 hypothetical protein; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein
YP_004343154.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR013249; KEGG: hoh:Hoch_4289 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70, region 4 domain protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004343155.1	COGs: COG1262 conserved hypothetical protein; KEGG: chu:CHU_0171 gliding motility-related protein; SPTR: Gliding motility-related protein; PFAM: Formylglycine-generating sulfatase enzyme
YP_004343157.1	InterPro IPR018707; KEGG: cat:CA2559_07595 hypothetical protein; PFAM: Protein of unknown function DUF2219; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2219)
YP_004343158.1	KEGG: scl:sce6728 hypothetical protein; SPTR:  exported protein
YP_004343159.1	COGs: COG0114 Fumarase; HAMAP: Fumarate hydratase class II; InterPro IPR005677:IPR000362:IPR018951; KEGG: cpi:Cpin_0238 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; PRIAM: Fumarate hydratase; SPTR: Fumarate hydratase, class II; TIGRFAM: Fumarate hydratase, class II; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II
YP_004343160.1	KEGG: chu:CHU_2270 hypothetical protein; SPTR:  uncharacterized protein
YP_004343161.1	KEGG: rrs:RoseRS_2786 hypothetical protein; SPTR:  uncharacterized protein
YP_004343162.1	KEGG: tgo:TGME49_077710 hypothetical protein; SPTR: Genome polyprotein
YP_004343163.1	KEGG: fba:FIC_01030 hypothetical protein; SPTR:  uncharacterized protein
YP_004343164.1	KEGG: pcb:PC302270.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004343165.1	KEGG: sbm:Shew185_2567 hypothetical protein; SPTR:  uncharacterized protein
YP_004343166.1	KEGG: nvi:100123744 similar to NAD-dependent deacetylase sirtuin 2 homolog; SPTR: Component of 5-methylcytosine-specific restriction enzyme McrBC
YP_004343167.1	KEGG: pph:Ppha_1599 hypothetical protein; SPTR:  uncharacterized protein
YP_004343168.1	KEGG: zpr:ZPR_3215 hypothetical protein; SPTR:  uncharacterized protein
YP_004343169.1	KEGG: lic:LIC12053 hypothetical protein; SPTR:  uncharacterized protein
YP_004343170.1	KEGG: kko:Kkor_0867 hypothetical protein; SPTR:  uncharacterized protein
YP_004343171.1	KEGG: tad:TRIADDRAFT_52752 hypothetical protein; SPTR:  uncharacterized protein
YP_004343172.1	KEGG: ote:Oter_3484 hypothetical protein; SPTR:  uncharacterized protein
YP_004343173.1	KEGG: smm:Smp_136370 hypothetical protein; SPTR:  uncharacterized protein
YP_004343174.1	KEGG: chu:CHU_0007 hypothetical protein; SPTR:  uncharacterized protein
YP_004343175.1	KEGG: fjo:Fjoh_2687 hypothetical protein; SPTR: Conserved repeat domain protein
YP_004343176.1	KEGG: pmc:P9515_02871 hypothetical protein; SPTR: Sugar/cell wall binding repeat protein
YP_004343177.1	KEGG: cnb:CNBG3520 hypothetical protein; SPTR: Triosephosphate isomerase
YP_004343178.1	InterPro IPR018958; KEGG: bsu:BSU21560 conserved hypothetical protein; phage SPbeta; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR:  uncharacterized protein
YP_004343179.1	KEGG: cce:Ccel_1494 hypothetical protein; SPTR:  uncharacterized protein
YP_004343180.1	KEGG: dat:HRM2_16990 McpA3; SPTR: McpA3
YP_004343181.1	KEGG: msi:Msm_1516 histidinol-phosphate aminotransferase, HisC; SPTR: Histidinol-phosphate aminotransferase, HisC
YP_004343182.1	KEGG: ath:AT3G62010 hypothetical protein; SPTR:  uncharacterized protein F21F14.180
YP_004343183.1	KEGG: rpr:RP295 hypothetical protein; SPTR:  uncharacterized protein
YP_004343184.1	KEGG: bcu:BCAH820_2216 hypothetical protein; SPTR:  uncharacterized protein
YP_004343185.1	KEGG: pti:PHATRDRAFT_39572 hypothetical protein; SPTR: Predicted protein
YP_004343186.1	KEGG: ddi:DDB_G0271548 hypothetical protein; SPTR:  uncharacterized protein
YP_004343187.1	KEGG: coc:Coch_1246 hypothetical protein; SPTR:  uncharacterized protein
YP_004343188.1	KEGG: cbe:Cbei_0292 hypothetical protein; SPTR:  uncharacterized protein
YP_004343189.1	KEGG: rcm:A1E_02215 hypothetical protein; SPTR:  uncharacterized protein
YP_004343190.1	KEGG: cyb:CYB_1077 phosphate ABC transporter, periplasmic phosphate-binding protein; SPTR: Phosphate ABC transporter, periplasmic phosphate-binding protein
YP_004343191.1	KEGG: pbe:PB000898.00.0 hypothetical protein; SPTR:  RXLR effector PEXRD17_MK90_1
YP_004343192.1	KEGG: cpi:Cpin_2776 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004343193.1	KEGG: chu:CHU_3449 hypothetical protein; SPTR:  uncharacterized protein
YP_004343194.1	KEGG: fps:FP0688 hypothetical protein; SPTR:  uncharacterized protein
YP_004343195.1	KEGG: cpi:Cpin_2772 hypothetical protein; SPTR:  uncharacterized protein
YP_004343196.1	KEGG: cpi:Cpin_2773 fibronectin type III domain protein; SPTR: Fibronectin type III domain protein
YP_004343197.1	COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR020821:IPR001604; KEGG: cts:Ctha_1807 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: Extracellular Endonuclease, subunit A; SPTR: DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease
YP_004343198.1	InterPro IPR011652; KEGG: str:Sterm_0454 MORN variant repeat protein; SPTR:  uncharacterized protein; PFAM: MORN repeat variant
YP_004343199.1	KEGG: bhe:BH16070 hypothetical protein; SPTR:  uncharacterized protein
YP_004343200.1	KEGG: fps:FP1134 sugar phosphate nucleotydyl transferase; SPTR: Probable sugar phosphate nucleotydyl transferase
YP_004343201.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR006402:IPR005834; KEGG: cpi:Cpin_3992 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_004343202.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: sli:Slin_1598 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family
YP_004343203.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR005215:IPR008881; KEGG: phe:Phep_3082 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; SPTR: Peptidyl-prolyl cis-trans isomerase, trigger factor; TIGRFAM: Trigger factor; PFAM: Bacterial trigger factor protein (TF) C-terminus; Bacterial trigger factor protein (TF); TIGRFAM: trigger factor
YP_004343204.1	InterPro IPR002591; KEGG: cat:CA2559_07660  alkaline phosphatase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; SPTR: PI-irrepressible alkaline phosphatase PafA; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase
YP_004343205.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR010559:IPR003594; KEGG: fps:FP1516 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, internal region; Two component regulator propeller; ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase
YP_004343206.1	InterPro IPR000835; KEGG: amd:AMED_4020 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR family transcriptional regulator; PFAM: MarR family
YP_004343207.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_3208 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004343208.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: rmr:Rmar_0902 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004343209.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fjo:Fjoh_2941 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004343210.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cat:CA2559_01905 response regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Transcriptional regulator protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343211.1	InterPro IPR000917; KEGG: aca:ACP_0069 hypothetical protein; PFAM: Sulfatase; SPTR:  uncharacterized protein; PFAM: Sulfatase
YP_004343212.1	COGs: COG3012 conserved hypothetical protein; KEGG: chu:CHU_2091 hypothetical protein; SPTR:  uncharacterized protein; PFAM: SEC-C motif
YP_004343213.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fps:FP0482 penicillin-binding protein; PFAM: Beta-lactamase-related; SPTR: Penicillin-binding protein 4*; PFAM: Beta-lactamase
YP_004343214.1	KEGG: pfa:PFF0765c conserved Plasmodium protein, unknown function; SPTR:  uncharacterized protein
YP_004343215.1	KEGG: mhu:Mhun_0167 hypothetical protein; SPTR: Universally conserved protein
YP_004343216.1	KEGG: pmz:HMPREF0659_A5269 gliding motility-associated protein GldM; SPTR:  uncharacterized protein; PFAM: GldM C-terminal domain
YP_004343217.1	KEGG: ana:alr2426 hypothetical protein; SPTR: Alr2426 protein
YP_004343218.1	InterPro IPR000601; KEGG: chu:CHU_1934 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR: CHU large protein; uncharacterized
YP_004343219.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: chu:CHU_1658 DEAD box-related helicase (ATP-dependent RNA helicase); PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase RhlE; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004343220.1	KEGG: chu:CHU_0404 hypothetical protein; SPTR:  uncharacterized protein
YP_004343221.1	COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004647:IPR004646; KEGG: fjo:Fjoh_0881 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; PRIAM: Fumarate hydratase; SPTR: Fumarase; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_004343222.1	COGs: COG2827 endonuclease containing a URI domain; InterPro IPR000305; KEGG: fjo:Fjoh_0254 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: Predicted endonuclease containing a URI domain; PFAM: GIY-YIG catalytic domain
YP_004343223.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594; KEGG: pdi:BDI_2438 two-component sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004343224.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: chu:CHU_1683 heptosyltransferase; PFAM: Glycosyl transferase, family 9; SPTR: Heptosyltransferase-related protein, glycosyltransferase 9 protein; PFAM: Glycosyltransferase 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II
YP_004343225.1	KEGG: rxy:Rxyl_2742 polysaccharide deacetylase; SPTR:  uncharacterized protein
YP_004343226.1	COGs: COG0308 Aminopeptidase N; KEGG: phe:Phep_3339  Zn-dependent aminopeptidase; SPTR: Aminopeptidase, ; PFAM: Peptidase M1
YP_004343227.1	KEGG: cbt:CLH_0677  oxidoreductase; SPTR:  uncharacterized protein
YP_004343228.1	KEGG: son:SO_1002 hypothetical protein; SPTR: MORN repeat variant
YP_004343229.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807:IPR000644; KEGG: fjo:Fjoh_4507 Cl-channel, voltage-gated family protein; PFAM: Chloride channel, voltage gated; Cystathionine beta-synthase, core; SPTR: Cl-channel, voltage-gated family protein; PFAM: CBS domain; Voltage gated chloride channel
YP_004343230.1	KEGG: sli:Slin_1871 hypothetical protein; SPTR: Fibronectin type III domain protein
YP_004343231.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: phe:Phep_1590 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR:  zinc protease; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16)
YP_004343232.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: phe:Phep_1589 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16)
YP_004343233.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: cat:CA2559_00985  dioxygenase; PFAM: 2-nitropropane dioxygenase, NPD; SPTR: 2-nitropropane dioxygenase; manually curated; PFAM: 2-nitropropane dioxygenase; TIGRFAM:  enoyl-(acyl-carrier-protein) reductase II
YP_004343234.1	KEGG: rbi:RB2501_12042 hypothetical protein; SPTR:  uncharacterized protein
YP_004343235.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: cno:NT01CX_1554 alginate O-acetylation protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family
YP_004343236.1	KEGG: cts:Ctha_0031 hypothetical protein; SPTR:  uncharacterized protein
YP_004343237.1	KEGG: ppa:PAS_chr1-4_0696 hypothetical protein; SPTR:  uncharacterized protein
YP_004343238.1	KEGG: chu:CHU_2463 UDP-N-acetylglucosamine enolpyruvyl transferase; SPTR:  uncharacterized protein
YP_004343239.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: phe:Phep_1186 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; SPTR: RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_004343240.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: phe:Phep_1187 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: Acriflavin resistance protein; SPTR: Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004343241.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: phe:Phep_1188 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004343242.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: abb:ABBFA_000249 regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004343243.1	KEGG: dvi:Dvir_GJ20436 GJ20436 gene product from transcript GJ20436-RA; SPTR: Phytase
YP_004343244.1	KEGG: spu:592988 similar to glycogen debranching enzyme; SPTR: DEHA2F09988p
YP_004343245.1	KEGG: cbr:CBG12847 Hypothetical protein CBG12847; SPTR:  uncharacterized protein
YP_004343246.1	KEGG: cfa:489152 tetratricopeptide repeat domain 1; SPTR:  tetratricopeptide repeat domain protein
YP_004343247.1	KEGG: cpi:Cpin_0079 cell wall/surface repeat protein; SPTR: Cell wall/surface repeat protein
YP_004343248.1	COGs: COG0657 Esterase/lipase; KEGG: cat:CA2559_11223 probable lipase; SPTR:  lipase; PFAM: alpha/beta hydrolase fold
YP_004343249.1	KEGG: hoh:Hoch_3510 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF1821)
YP_004343250.1	COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: coc:Coch_1546 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region
YP_004343251.1	KEGG: phe:Phep_2256 hypothetical protein; SPTR: Thiol:disulfide interchange protein dsbD; PFAM: Disulphide bond corrector protein DsbC
YP_004343252.1	KEGG: chu:CHU_3058 hypothetical protein; SPTR:  uncharacterized protein
YP_004343253.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; HAMAP: tRNA(Ile)-lysidine synthase; InterPro IPR012795:IPR011063; KEGG: fbc:FB2170_12466  cell-cycle protein; PFAM: PP-loop; SPTR: TRNA(Ile)-lysidine synthase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_004343254.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR015890; KEGG: zpr:ZPR_2841 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; PRIAM: Aminodeoxychorismate synthase; SPTR: Anthranilate synthase component I; PFAM: chorismate binding enzyme
YP_004343255.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: gau:GAU_0013 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004343256.1	KEGG: fps:FP1558 hypothetical protein; SPTR:  uncharacterized protein
YP_004343257.1	KEGG: cpi:Cpin_3191 hypothetical protein; SPTR:  uncharacterized protein
YP_004343258.1	KEGG: hsl:OE3292F hypothetical protein; SPTR:  uncharacterized protein
YP_004343259.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440:IPR011712; KEGG: fba:FIC_01135 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004343260.1	InterPro IPR011600; KEGG: bcr:BCAH187_E0055 peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; SPTR:  peptidase (Caspase-1 like protein); PFAM: Caspase domain
YP_004343261.1	KEGG: scl:sce5689 hypothetical protein; SPTR:  uncharacterized protein
YP_004343262.1	KEGG: scl:sce5688 hypothetical protein; SPTR:  uncharacterized protein
YP_004343263.1	COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR003959; KEGG: scl:sce5687 ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: ATPases of the AAA+ class, ; PFAM: ATPase associated with various cellular activities (AAA)
YP_004343264.1	KEGG: hoh:Hoch_2216 hypothetical protein; SPTR:  uncharacterized protein
YP_004343265.1	KEGG: pap:PSPA7_5558 Sel1; SPTR: Sel1 domain protein; manually curated
YP_004343266.1	KEGG: zpr:ZPR_3996 hypothetical protein; SPTR:  uncharacterized protein
YP_004343267.1	KEGG: zpr:ZPR_3997 hypothetical protein; SPTR:  uncharacterized protein
YP_004343268.1	COGs: COG3621 Patatin; InterPro IPR002641; KEGG: zpr:ZPR_3998 patatin; PFAM: Patatin; SPTR: Patatin; manually curated; PFAM: Patatin-like phospholipase
YP_004343269.1	KEGG: bas:BUsg560 ferridoxin NADP reductase; SPTR:  uncharacterized protein
YP_004343270.1	KEGG: abu:Abu_1731 auxin efflux carrier protein
YP_004343271.1	KEGG: cac:CA_C3230 hydrogenase subunit (ferredoxin); SPTR:  uncharacterized protein
YP_004343272.1	KEGG: pdi:BDI_0372 hypothetical protein; SPTR:  uncharacterized protein
YP_004343273.1	KEGG: cat:CA2559_10873 hypothetical protein; SPTR: Replicase
YP_004343274.1	KEGG: cpi:Cpin_4789 YD repeat protein; SPTR:  uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; TIGRFAM: RHS repeat-associated core domain
YP_004343275.1	COGs: COG1662 Transposase and inactivated derivatives IS1 family; InterPro IPR005063; KEGG: fjo:Fjoh_2680 IS1 transposase; PFAM: Transposase, IS1; SPTR: IS1 transposase; PFAM: IS1 transposase
YP_004343276.1	KEGG: swi:Swit_0907 hypothetical protein; SPTR:  uncharacterized protein
YP_004343277.1	KEGG: chu:CHU_1525 rhs family-like protein; SPTR:  uncharacterized protein; TIGRFAM: RHS repeat-associated core domain
YP_004343278.1	KEGG: ptm:GSPATT00034652001 hypothetical protein; SPTR: Chromosome undetermined scaffold_146, whole genome shotgun sequence
YP_004343279.1	KEGG: chu:CHU_1522 hypothetical protein; SPTR:  uncharacterized protein
YP_004343280.1	KEGG: fjo:Fjoh_0601 hypothetical protein; SPTR:  uncharacterized protein
YP_004343281.1	KEGG: cqu:CpipJ_CPIJ000317 hypothetical protein; SPTR:  uncharacterized protein
YP_004343282.1	KEGG: cpi:Cpin_4793 hypothetical protein; SPTR:  uncharacterized protein
YP_004343283.1	KEGG: pfd:PFDG_00369 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004343285.1	KEGG: cpi:Cpin_5194 ABC transporter related; SPTR:  uncharacterized protein
YP_004343286.1	KEGG: pdi:BDI_0746 hypothetical protein; SPTR: DNA binding domain protein
YP_004343287.1	KEGG: cpv:cgd8_3010 Smc ABC ATpase; SPTR: Smc ABC ATpase
YP_004343288.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: cat:CA2559_00445 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase
YP_004343289.1	COGs: COG1961 Site-specific recombinase DNA invertase Pin homologs; InterPro IPR006119; KEGG: cpi:Cpin_3000 resolvase domain protein; PFAM: Resolvase, N-terminal; SPTR: Resolvase domain protein; PFAM: Recombinase; Resolvase, N terminal domain
YP_004343290.1	KEGG: ssa:SSA_1231 hypothetical protein; SPTR:  uncharacterized protein
YP_004343291.1	KEGG: cbe:Cbei_4586 lantibiotic modifying -like protein; SPTR: Lantibiotic modifying-like protein
YP_004343292.1	InterPro IPR001387; KEGG: pdi:BDI_2133 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; manually curated; PFAM: Helix-turn-helix
YP_004343293.1	KEGG: bxe:Bxe_A2569 hypothetical protein; SPTR:  uncharacterized protein
YP_004343294.1	KEGG: cyc:PCC7424_0969 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase)
YP_004343295.1	KEGG: fps:FP0879 hypothetical protein; SPTR:  uncharacterized protein
YP_004343296.1	COGs: COG3696  silver efflux pump; InterPro IPR004763:IPR001036:IPR003423; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004343297.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR000089; KEGG: phe:Phep_2684 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; Biotin/lipoyl attachment; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004343298.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: scl:sce1436 hypothetical protein; PFAM: Peptidase M28; SPTR:  uncharacterized protein; PFAM: Peptidase M28
YP_004343299.1	COGs: COG2217 Cation transport ATPase; InterProIPR006404:IPR006416:IPR001757:IPR008250:IPR 005834; KEGG: phe:Phep_2686 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Zinc-exporting ATPase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
YP_004343300.1	KEGG: msv:Mesil_0686 hypothetical protein; SPTR:  uncharacterized protein
YP_004343301.1	KEGG: chu:CHU_1065 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004343302.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: pgi:PG2175 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR:  uncharacterized protein; PFAM: AhpC/TSA family
YP_004343303.1	KEGG: sli:Slin_1516 heavy metal transport/detoxification protein; SPTR: MerP
YP_004343304.1	KEGG: chu:CHU_0726 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3703)
YP_004343305.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fps:FP0983 TonB-dependent outer membrane receptorprecursor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR:  uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004343306.1	KEGG: sli:Slin_6738 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2874)
YP_004343307.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: cpi:Cpin_4883 histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Possible twp-component sensor histidine kinase; PFAM: His Kinase A (phosphoacceptor) domain
YP_004343308.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cpi:Cpin_4882 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004343309.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: fjo:Fjoh_3093 cation efflux protein; PFAM: Cation efflux protein; SPTR: Cation efflux protein; PFAM: Cation efflux family
YP_004343310.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: cpi:Cpin_6129 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004343311.1	KEGG: fjo:Fjoh_3091 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004343312.1	KEGG: gfo:GFO_1322 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: MerC mercury resistance protein
YP_004343313.1	KEGG: rbi:RB2501_10362 tyrosine type site-specific recombinase; SPTR: Tyrosine type site-specific recombinase
YP_004343314.1	KEGG: phu:Phum_PHUM400460 exonuclease, SPTR:  uncharacterized protein
YP_004343315.1	InterPro IPR002514; KEGG: paa:Paes_2107 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_004343316.1	KEGG: fbc:FB2170_15961 hypothetical protein; SPTR:  uncharacterized protein
YP_004343317.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004343318.1	KEGG: abu:Abu_0324 methyl-accepting chemotaxis protein; SPTR:  uncharacterized protein
YP_004343319.1	KEGG: pbe:PB000644.01.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004343320.1	COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006674; KEGG: fjo:Fjoh_4880 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SPTR: Metal dependent phosphohydrolase
YP_004343321.1	KEGG: cpi:Cpin_1932 hypothetical protein; SPTR:  uncharacterized protein
YP_004343322.1	KEGG: rer:RER_34940 hypothetical protein; SPTR: Possible cell wall protein
YP_004343323.1	InterPro IPR011971:IPR019052; KEGG: phe:Phep_2659 hypothetical protein; PFAM: Protein of unknown function DUF2383; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284; PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein
YP_004343324.1	COGs: COG3652 outer membrane protein; KEGG: chu:CHU_3550 outer membrane protein; SPTR: Outer membrane protein
YP_004343325.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523; KEGG: saf:SULAZ_1150 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_004343326.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: cpi:Cpin_3323 glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: Glutaryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004343327.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004343328.1	COGs: COG1200 RecG-like helicase; InterProIPR014001:IPR001650:IPR004609:IPR004365:IPR 011545; KEGG: fbc:FB2170_12226 ATP-dependent DNA helicase RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: Helicase conserved C-terminal domain; OB-fold nucleic acid binding domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_004343329.1	KEGG: mcu:HMPREF0573_10984 DO serine protease; SPTR:  uncharacterized protein
YP_004343330.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR004652:IPR001269; KEGG: fps:FP2252 tRNA-dihydrouridine synthase; PFAM: tRNA-dihydrouridine synthase; SPTR: Probable tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: Dihydrouridine synthase (Dus); TIGRFAM:  TIM-barrel protein, nifR3 family
YP_004343331.1	COGs: COG5373 membrane protein; InterPro IPR019286; KEGG: coc:Coch_1520 membrane protein-like protein; PFAM: Protein of unknown function DUF2339, transmembrane; SPTR: Conserved hypothetical transmembrane protein; PFAM: Predicted membrane protein (DUF2339)
YP_004343332.1	KEGG: bth:BT_2059 TonB; SPTR:  uncharacterized protein; PFAM: Gram-negative bacterial tonB protein
YP_004343333.1	KEGG: cpi:Cpin_6300 histidine kinase; SPTR: Histidine kinase
YP_004343334.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR002467:IPR000994; KEGG: coc:Coch_0818 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; PRIAM: Methionyl aminopeptidase; SPTR: Methionine aminopeptidase; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Metallopeptidase M24; TIGRFAM: methionine aminopeptidase, type I
YP_004343335.1	KEGG: fjo:Fjoh_2887 hypothetical protein; SPTR:  uncharacterized protein
YP_004343336.1	KEGG: chu:CHU_0630 hypothetical protein; SPTR:  uncharacterized protein
YP_004343337.1	COGs: COG0793 Periplasmic protease; InterPro IPR005151; KEGG: cpi:Cpin_1953 carboxyl-terminal protease; PFAM: Peptidase S41; PRIAM: C-terminal processing peptidase; SMART: Peptidase S41; SPTR: Carboxyl-terminal protease; PFAM: Peptidase S41; TIGRFAM: C-terminal peptidase (prc)
YP_004343338.1	KEGG: smf:Smon_0613 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR:  uncharacterized protein
YP_004343340.1	KEGG: clj:CLJU_c00300 hypothetical protein
YP_004343341.1	COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: hth:HTH_0668 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; SPTR: Aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_004343342.1	KEGG: tva:TVAG_211290 hypothetical protein; SPTR: Sensory box histidine kinase
YP_004343343.1	InterPro IPR000537; KEGG: cat:CA2559_12008 Maf-like protein; PFAM: UbiA prenyltransferase; SPTR: Maf-like protein; PFAM: UbiA prenyltransferase
YP_004343345.1	COGs: COG0045 Succinyl-CoA synthetase beta subunit; HAMAP: Succinyl-CoA synthetase, beta subunit; InterPro IPR005809:IPR013650:IPR005811; KEGG: phe:Phep_3018 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: Succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_004343346.1	KEGG: cpi:Cpin_2392 hypothetical protein; SPTR:  uncharacterized protein
YP_004343347.1	KEGG: hch:HCH_03046 hypothetical protein; SPTR:  uncharacterized protein
YP_004343348.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005481:IPR005479:IPR005482; KEGG: sli:Slin_3536 carbamoyl-phosphate synthase L chain ATP-binding protein; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004343349.1	KEGG: bfs:BF2513 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Family of unknown function (DUF490)
YP_004343350.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; HAMAP: O-sialoglycoprotein endopeptidase; InterPro IPR017861:IPR000905; KEGG: coc:Coch_1726  DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: Metalloendopeptidase, glycoprotease; TIGRFAM:  glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; PFAM: Glycoprotease; TIGRFAM:  glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_004343351.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: bfr:BF3726 tRNA and rRNA cytosine-C5-methylase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; SPTR:  uncharacterized protein; PFAM: NOL1/NOP2/sun family
YP_004343352.1	KEGG: ctp:CTRG_00094 hypothetical protein; SPTR:  uncharacterized protein
YP_004343353.1	KEGG: fjo:Fjoh_4051 PKD domain-containing protein; SPTR: Possible filamentous hemagglutinin outer membrane protein
YP_004343354.1	InterPro IPR000601; KEGG: fjo:Fjoh_4051 PKD domain-containing protein; PFAM: PKD; SPTR: Possible filamentous hemagglutinin outer membrane protein
YP_004343355.1	KEGG: tca:663516 myosin 5; SPTR:  uncharacterized protein
YP_004343356.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: fps:FP0271 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase (NADP(+)); SPTR: Glutamate dehydrogenase; manually curated; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004343357.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: cat:CA2559_10943  oxidoreductase; PFAM: Dehydrogenase, E1 component; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase beta subunit; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004343358.1	InterPro IPR004564; KEGG: sli:Slin_5854 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_004343359.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: cat:CA2559_06250  FtsK/SpoIIIE-like protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: Stage III sporulation DNA translocase E; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_004343360.1	KEGG: mfe:Mefer_1587 hypothetical protein; SPTR: Membrane carboxypeptidase (Penicillin-binding protein)
YP_004343361.1	KEGG: pcb:PC000004.02.0 helicase; SPTR: Helicase
YP_004343362.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase; InterPro IPR006035; KEGG: phe:Phep_2319 arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; PRIAM: Arginase; SPTR: Arginase; PFAM: Arginase; TIGRFAM: arginase
YP_004343363.1	COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: zpr:ZPR_3837 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_004343364.1	InterPro IPR007341; KEGG: maq:Maqu_3681 transglycosylase-associated protein; PFAM: Transglycosylase-associated protein; SPTR: Transglycosylase-associated protein; PFAM: Transglycosylase associated protein
YP_004343365.1	KEGG: chu:CHU_1596 hypothetical protein; SPTR:  uncharacterized protein
YP_004343366.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: pdi:BDI_1826 16S ribosomal RNA methyltransferase RsmE; PFAM: Ribosomal RNA small subunit methyltransferase E; SPTR:  uncharacterized protein; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_004343367.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR005790:IPR010372; KEGG: fjo:Fjoh_2918 DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; SPTR:  uncharacterized protein; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_004343368.1	InterPro IPR007409; KEGG: fjo:Fjoh_2919 hypothetical protein; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SPTR: Type I restriction enzyme R protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)
YP_004343369.1	COGs: COG4108 Peptide chain release factor RF-3; InterPro IPR004548:IPR005225:IPR000795; KEGG: dfe:Dfer_5122 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; SPTR: Peptide chain release factor 3; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3
YP_004343370.1	InterPro IPR019861; KEGG: gfo:GFO_0022 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004343371.1	COGs: COG0692 Uracil DNA glycosylase; HAMAP: Uracil-DNA glycosylase; InterPro IPR002043:IPR005122; KEGG: sdl:Sdel_0009 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; SPTR: Uracil-DNA glycosylase; TIGRFAM: Uracil-DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase
YP_004343372.1	COGs: COG0407 Uroporphyrinogen-III decarboxylase; HAMAP: Uroporphyrinogen decarboxylase HemE; InterPro IPR006361:IPR000257; KEGG: dfe:Dfer_3425 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: Uroporphyrinogen decarboxylase HemE; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_004343373.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: fbc:FB2170_01871 OmpA/MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA family protein; PFAM: OmpA family
YP_004343374.1	KEGG: lic:LIC12051 hypothetical protein; SPTR:  uncharacterized protein
YP_004343375.1	COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; InterPro IPR003140; KEGG: swd:Swoo_3966 phospholipase/carboxylesterase; PFAM: Phospholipase/carboxylesterase; SPTR: Poly 3 hydroxybutyrate depolymerase; PFAM: Phospholipase/Carboxylesterase
YP_004343376.1	KEGG: vpr:Vpar_1412 hypothetical protein; SPTR:  uncharacterized protein
YP_004343377.1	KEGG: sru:SRU_1533 hypothetical protein; SPTR:  uncharacterized protein
YP_004343378.1	KEGG: cpi:Cpin_6882 hypothetical protein; SPTR:  uncharacterized protein
YP_004343379.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: fbc:FB2170_09426 major facilitator superfamily (MFS_1) transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily (MFS_1) transporter; PFAM: Major Facilitator Superfamily
YP_004343380.1	KEGG: tet:TTHERM_00865240 DNA ligase I, ATP-dependent; SPTR:  uncharacterized protein
YP_004343381.1	KEGG: chu:CHU_2902 hypothetical protein; SPTR:  uncharacterized protein
YP_004343382.1	KEGG: fjo:Fjoh_3297 hypothetical protein; SPTR:  uncharacterized protein
YP_004343383.1	KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related; SPTR: Fibronectin type III domain protein
YP_004343384.1	KEGG: fjo:Fjoh_1346 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004343385.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR003593:IPR002078:IPR002197; KEGG: fps:FP1694 sigma-54 dependent two-component system response regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Probable sigma-54 dependent two-component system response regulatory protein; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004343386.1	KEGG: fjo:Fjoh_1976 hypothetical protein; SPTR:  uncharacterized protein
YP_004343387.1	COGs: COG2060 K+-transporting ATPase A chain; HAMAP: ATPase, K+ transporting, A subunit; InterPro IPR004623; KEGG: fjo:Fjoh_1975 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase A chain; TIGRFAM: ATPase, K+ transporting, A subunit; PFAM: Potassium-transporting ATPase A subunit; TIGRFAM: K+-transporting ATPase, KdpA
YP_004343388.1	COGs: COG2216 High-affinity K+ transport system ATPase chain B; HAMAP: Potassium-transporting ATPase, B chain; InterPro IPR006391:IPR001757:IPR008250:IPR005834; KEGG: chu:CHU_1983 potassium-transporting ATPase, subunit B; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Potassium-transporting ATPase B chain; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit
YP_004343389.1	COGs: COG2156 K+-transporting ATPase c chain; HAMAP: Potassium transporting ATPase, C subunit; InterPro IPR003820; KEGG: sli:Slin_0065 potassium-transporting ATPase, C subunit; PFAM: Potassium transporting ATPase, C subunit; PRIAM: Potassium-transporting ATPase; SPTR: Potassium-transporting ATPase C chain; TIGRFAM: Potassium transporting ATPase, C subunit; PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit
YP_004343390.1	KEGG: cpi:Cpin_3608 hypothetical protein; SPTR:  uncharacterized protein
YP_004343391.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003852:IPR006016; KEGG: fps:FP1688 two-component system sensory protein; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; SPTR: Probable two-component system sensory protein; PFAM: Osmosensitive K+ channel His kinase sensor domain; Universal stress protein family
YP_004343392.1	COGs: COG5002 Signal transduction histidine kinase; InterProIPR003660:IPR000014:IPR003661:IPR003594:IPR 013767; KEGG: chu:CHU_1987 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004343393.1	COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: fps:FP0619 potassium transport system protein Kup; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup; PFAM: K+ potassium transporter
YP_004343394.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: zpr:ZPR_1366 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004343395.1	KEGG: fjo:Fjoh_1972 hypothetical protein; SPTR:  uncharacterized protein
YP_004343396.1	KEGG: mmo:MMOB0670 MgpA-like protein; SPTR: Mgpa-like protein
YP_004343397.1	KEGG: pca:Pcar_2245  protease; SPTR:  protease
YP_004343398.1	KEGG: fjo:Fjoh_4747 hypothetical protein; SPTR:  uncharacterized protein
YP_004343399.1	COGs: COG3541 nucleotidyltransferase; InterPro IPR018775; KEGG: zpr:ZPR_4676 predicted nucleotidyltransferase; PFAM: Nucleotidyltransferase, predicted; SPTR:  uncharacterized protein; PFAM: Predicted nucleotidyltransferase
YP_004343400.1	COGs: COG3541 nucleotidyltransferase; InterPro IPR018775; KEGG: bcu:BCAH820_0397 hypothetical protein; PFAM: Nucleotidyltransferase, predicted; SPTR:  uncharacterized protein; PFAM: Predicted nucleotidyltransferase
YP_004343401.1	KEGG: pbe:PB001441.02.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004343402.1	COGs: COG1690 conserved hypothetical protein; KEGG: ara:Arad_4866 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein family UPF0027
YP_004343403.1	COGs: COG2378 transcriptional regulator protein; InterPro IPR008775; KEGG: fjo:Fjoh_4751 transcriptional regulator-like protein; PFAM: Phytanoyl-CoA dioxygenase; SPTR:  uncharacterized protein; PFAM: Phytanoyl-CoA dioxygenase (PhyH)
YP_004343405.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004343406.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR:  uncharacterized protein
YP_004343407.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004343408.1	KEGG: chu:CHU_1187 hypothetical protein; SPTR:  uncharacterized protein
YP_004343409.1	KEGG: pti:PHATRDRAFT_42689 hypothetical protein
YP_004343410.1	KEGG: fps:FP2320 hypothetical protein; SPTR:  uncharacterized protein
YP_004343411.1	KEGG: bfs:BF0473 hypothetical protein; SPTR:  uncharacterized protein
YP_004343413.1	KEGG: fjo:Fjoh_2059 hypothetical protein; SPTR: Response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
YP_004343414.1	InterPro IPR011652; KEGG: gfo:GFO_3089 hypothetical protein; PFAM: MORN variant; SPTR:  uncharacterized protein; PFAM: MORN repeat variant
YP_004343415.1	KEGG: pto:PTO1428 MmpL family protein; SPTR:  uncharacterized protein
YP_004343416.1	KEGG: fpl:Ferp_1750 NMT1/THI5 like domain protein; SPTR:  uncharacterized protein
YP_004343417.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fjo:Fjoh_0036 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004343418.1	KEGG: fps:FP1537 hypothetical protein; SPTR:  uncharacterized protein
YP_004343419.1	KEGG: fps:FP1571 hypothetical protein; SPTR:  uncharacterized protein
YP_004343420.1	KEGG: cpi:Cpin_2795 peptidase C14 caspase catalytic subunit P20; SPTR:  peptidoglycan binding domain protein; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_004343421.1	KEGG: zpr:ZPR_2233  DNA-binding protein; SPTR:  DNA-binding protein
YP_004343422.1	KEGG: fps:FP1574 hypothetical protein; SPTR:  uncharacterized protein
YP_004343423.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004343424.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004343425.1	KEGG: mka:MK0554  molybdenum cofactor biosynthesis protein C; SPTR: Probable molybdenum cofactor biosynthesis protein C
YP_004343426.1	KEGG: gfo:GFO_0933 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2971)
YP_004343428.1	COGs: COG4823 Abortive infection bacteriophage resistance protein; InterPro IPR011664; KEGG: fps:FP0069 hypothetical protein; PFAM: Abortive infection bacteriophage resistance related; SPTR:  uncharacterized protein; PFAM: Abi-like protein
YP_004343429.1	KEGG: tet:TTHERM_00805880 hypothetical protein; SPTR:  uncharacterized protein
YP_004343430.1	InterPro IPR001387; KEGG: pmz:HMPREF0659_A6177  toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  toxin-antitoxin system, antitoxin component, Xre family; PFAM: Helix-turn-helix
YP_004343431.1	KEGG: ptm:GSPATT00005463001 hypothetical protein; SPTR:  uncharacterized protein
YP_004343432.1	KEGG: bxe:Bxe_A0216 hypothetical protein; SPTR:  uncharacterized protein
YP_004343433.1	KEGG: dol:Dole_0905  restriction enzyme; SPTR:  restriction enzyme; PFAM: T5orf172 domain
YP_004343434.1	KEGG: dol:Dole_0904 site-specific DNA-methyltransferase (adenine-specific); PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR:  type III restriction system endonuclease; PFAM: Eco57I restriction endonuclease
YP_004343435.1	KEGG: dol:Dole_0903 type III restriction system methylase; SPTR: Type III restriction system methylase; PFAM:  RNA methylase UPF0020
YP_004343436.1	InterPro IPR001387; KEGG: gfo:GFO_0879 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix
YP_004343437.1	InterPro IPR014907; KEGG: bth:BT_0404 hypothetical protein; PFAM: VirE N-terminal; SPTR:  uncharacterized protein; PFAM: VirE N-terminal domain
YP_004343438.1	KEGG: cat:CA2559_00435 hypothetical protein; SPTR: DNA binding domain protein; TIGRFAM: DNA binding domain, excisionase
YP_004343439.1	KEGG: tva:TVAG_008690 hypothetical protein; SPTR:  coiled-coil protein
YP_004343440.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase
YP_004343441.1	COGs: COG1741 Pirin-related protein; InterPro IPR003829; KEGG: fjo:Fjoh_1735 pirin domain-containing protein; PFAM: Pirin, N-terminal; SPTR: Pirin domain protein; PFAM: Pirin
YP_004343442.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: fjo:Fjoh_4887 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase
YP_004343443.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: fjo:Fjoh_1733 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; PFAM: YceI-like domain
YP_004343444.1	KEGG: fps:FP1830 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004343445.1	KEGG: pcb:PC000322.01.0 hypothetical protein; SPTR: Mediator of RNA polymerase II transcription subunit 16
YP_004343446.1	InterPro IPR006626; KEGG: bps:BPSS1434 membrane-anchored cell surface protein; SPTR:  uncharacterized protein
YP_004343447.1	InterPro IPR000601; KEGG: pti:PHATRDRAFT_46378 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004343448.1	InterPro IPR013517; KEGG: sli:Slin_4333 FG-GAP repeat protein; PFAM: FG-GAP; SPTR: Vcbs, ; PFAM: FG-GAP repeat
YP_004343449.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro IPR004424:IPR006204:IPR013750; KEGG: chu:CHU_1210 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_004343450.1	COGs: COG0825 Acetyl-CoA carboxylase alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; InterPro IPR001095:IPR020582; KEGG: coc:Coch_0192 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_004343451.1	KEGG: dpe:Dper_GL13644 GL13644 gene product from transcript GL13644-RA; SPTR: GA26974
YP_004343452.1	KEGG: cpi:Cpin_0224 hypothetical protein; SPTR:  uncharacterized protein
YP_004343453.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: cpi:Cpin_2314 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI family protein; PFAM: YceI-like domain
YP_004343454.1	KEGG: cpi:Cpin_2313 hypothetical protein; SPTR:  uncharacterized protein
YP_004343455.1	KEGG: cpi:Cpin_6394 hypothetical protein; SPTR:  uncharacterized protein
YP_004343456.1	InterPro IPR002861; KEGG: sus:Acid_3653 hypothetical protein; PFAM: Reeler domain; SPTR:  uncharacterized protein; PFAM: Reeler domain
YP_004343457.1	KEGG: phe:Phep_3781 hypothetical protein; SPTR:  uncharacterized protein
YP_004343458.1	KEGG: bth:BT_4327 hypothetical protein; SPTR:  uncharacterized protein
YP_004343459.1	COGs: COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase; InterPro IPR002579; KEGG: chu:CHU_0754 methionine sulfoxide reductase B; PFAM: Methionine sulphoxide reductase B; PRIAM: Peptide-methionine (R)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_004343460.1	KEGG: cpi:Cpin_1334 lytic transglycosylase catalytic; SPTR: Lytic transglycosylase catalytic; manually curated; PFAM: Transglycosylase SLT domain
YP_004343461.1	KEGG: sli:Slin_5987 hypothetical protein; SPTR:  uncharacterized protein
YP_004343462.1	COGs: COG0759 conserved hypothetical protein; HAMAP: Protein of unknown function DUF37; InterPro IPR002696; KEGG: fba:FIC_00529 protein containing DUF37; PFAM: Protein of unknown function DUF37; SPTR: UPF0161 protein FIC_00529; TIGRFAM: Protein of unknown function DUF37; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_004343463.1	KEGG: tga:TGAM_0970 WD40-domain containing protein; SPTR:  uncharacterized protein
YP_004343464.1	KEGG: smt:Smal_0488 pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Capsid L2 protein
YP_004343465.1	KEGG: cyh:Cyan8802_3916 phage shock protein A, PspA; SPTR:  uncharacterized protein
YP_004343466.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: fps:FP1023 cell surface protein; PFAM: PKD; SMART: PKD; SPTR: Probable cell surface protein; PFAM: Pregnancy-associated plasma protein-A; PKD domain
YP_004343467.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: cpi:Cpin_0615 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; PFAM: Aminotransferase class I and II
YP_004343468.1	COGs: COG3794 Plastocyanin; InterPro IPR000923; KEGG: cat:CA2559_12818 hypothetical protein; PFAM: Blue (type 1) copper domain; SPTR:  uncharacterized protein; PFAM: Copper binding proteins, plastocyanin/azurin family
YP_004343469.1	COGs: COG0793 Periplasmic protease; InterPro IPR011659:IPR005151; KEGG: pdi:BDI_2726  tricorn-like protease; PFAM: Peptidase S41; WD40-like Beta Propeller; SPTR: MdsD protein; PFAM: WD40-like Beta Propeller Repeat; Peptidase S41
YP_004343470.1	KEGG: phe:Phep_0984 hypothetical protein; SPTR:  uncharacterized protein
YP_004343472.1	KEGG: phe:Phep_2396 hypothetical protein; SPTR:  uncharacterized protein
YP_004343473.1	InterPro IPR008231:IPR002547; KEGG: chu:CHU_3785 methionine--tRNA ligase (methionine tRNA synthetase); PFAM: tRNA-binding domain; SPTR: Methionine--tRNA ligase (Methionine tRNA synthetase); TIGRFAM: Secretion chaperone CsaA; PFAM:  tRNA binding domain; TIGRFAM: export-related chaperone CsaA
YP_004343474.1	KEGG: pbe:PB000737.03.0 hypothetical protein; SPTR:  integron gene cassette protein
YP_004343475.1	KEGG: fps:FP0008 hypothetical protein; SPTR:  uncharacterized protein
YP_004343476.1	InterPro IPR000595; KEGG: fps:FP0009 cAMP-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Probable cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain
YP_004343477.1	KEGG: cts:Ctha_1867 hypothetical protein; SPTR:  uncharacterized protein
YP_004343478.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: fjo:Fjoh_2920 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Candidate beta-D/alpha-L-glycosyltransferase; Glycosyltransferase 2; PFAM: Glycosyl transferase 2
YP_004343479.1	KEGG: scl:sce5975 hypothetical protein; SPTR:  uncharacterized protein
YP_004343480.1	KEGG: zpr:ZPR_2561 hypothetical protein; SPTR:  uncharacterized protein
YP_004343481.1	KEGG: fps:FP0500 hypothetical protein; SPTR:  outermembrane protein
YP_004343482.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: sil:SPO3848 sterol desaturase; PFAM: Fatty acid hydroxylase; SPTR: Sterol desaturase; PFAM: Fatty acid hydroxylase superfamily
YP_004343483.1	InterPro IPR013217; KEGG: cat:CA2559_04785 hypothetical SAM-dependent methyltransferase; PFAM: Methyltransferase type 12; SPTR: Methyltransferase domain protein; PFAM: Methyltransferase domain
YP_004343484.1	COGs: COG3759 membrane protein; InterPro IPR009732; KEGG: fbc:FB2170_06820 hypothetical protein; PFAM: Protein of unknown function DUF1304; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1304)
YP_004343485.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874; KEGG: cpi:Cpin_2345 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase, class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase, type II; TIGRFAM: Dehydroquinase, class II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_004343486.1	COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR011932:IPR004107:IPR002104; KEGG: bfs:BF4279  tyrosine recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine type site-specific recombinase; TIGRFAM: Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase; TIGRFAM: tyrosine recombinase XerD
YP_004343487.1	KEGG: pdi:BDI_1719 hypothetical protein; SPTR:  uncharacterized protein
YP_004343488.1	COGs: COG0621 2-methylthioadenine synthetase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; InterProIPR005839:IPR005840:IPR006638:IPR013848:IPR 007197; KEGG: dfe:Dfer_3605 MiaB-like tRNA modifying enzyme YliG; PFAM: Methylthiotransferase, N-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_004343489.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; HAMAP: Prolipoprotein diacylglyceryl transferase; InterPro IPR001640; KEGG: gfo:GFO_2743 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_004343490.1	COGs: COG1054 sulfurtransferase; HAMAP: Uncharacterised protein family UPF0176; InterPro IPR001763:IPR020936; KEGG: cat:CA2559_03470 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein FBALC1_00532; PFAM: Rhodanese-like domain
YP_004343491.1	InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004343492.1	KEGG: chu:CHU_1740 hypothetical protein; SPTR:  uncharacterized protein
YP_004343493.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR007692:IPR007693:IPR007694; KEGG: dfe:Dfer_1073 replicative DNA helicase; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; SPTR: Replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_004343494.1	KEGG: chu:CHU_3557 hypothetical protein; SPTR:  uncharacterized protein
YP_004343495.1	COGs: COG0708 Exonuclease III; InterPro IPR000097:IPR004808:IPR005135; KEGG: hms:HMU02160  exodeoxyribonuclease; PFAM: Endonuclease/exonuclease/phosphatase; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SPTR: Exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/Exonuclease/phosphatase; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_004343496.1	COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: coc:Coch_2031 DNA mismatch repair protein MutS domain protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: MutS2 family protein; PFAM: MutS domain V
YP_004343497.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR011701; KEGG: emi:Emin_0834 amino acid/peptide transporter; PFAM: Major facilitator superfamily MFS-1; SPTR: Amino acid/peptide transporter; PFAM: Major Facilitator Superfamily
YP_004343498.1	KEGG: pyo:PY00365 hypothetical protein; SPTR:  uncharacterized protein
YP_004343499.1	KEGG: bsb:Bresu_1104 hypothetical protein; SPTR:  uncharacterized protein
YP_004343500.1	KEGG: zpr:ZPR_0878 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF481
YP_004343501.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: bvu:BVU_3161 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR:  uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family
YP_004343502.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; InterPro IPR004803:IPR002616; KEGG: rbi:RB2501_12357 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_004343503.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: fjo:Fjoh_0221 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Candidate beta-glycosyltransferase; Glycosyltransferase 2; PFAM: Glycosyl transferase 2
YP_004343504.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: chu:CHU_1195 RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004343505.1	KEGG: chu:CHU_2789 hypothetical protein; SPTR:  uncharacterized protein
YP_004343506.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR000873; KEGG: cat:CA2559_06190 probable long chain fatty-acid CoA ligase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Long-chain-fatty-acid--CoA ligase; SPTR: Probable long chain fatty-acid CoA ligase; PFAM: AMP-binding enzyme
YP_004343507.1	COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: zpr:ZPR_0845 secreted amidohydrolase; PFAM: Amidohydrolase 3; SPTR: Secreted amidohydrolase; PFAM: Amidohydrolase
YP_004343508.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002198; KEGG: fbc:FB2170_06730 oxidoreductase, short chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Serine 3-dehydrogenase; SPTR: Oxidoreductase, short chain dehydrogenase/reductase; PFAM: short chain dehydrogenase
YP_004343509.1	KEGG: abo:ABO_0923 hypothetical protein; SPTR: Membrane protein
YP_004343510.1	COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; HAMAP: Phosphoribosylformylglycinamidine synthase II; InterPro IPR010074:IPR000728:IPR010918; KEGG: sli:Slin_2274 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_004343511.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; HAMAP: rRNA small subunit methyltransferase G; InterPro IPR003682; KEGG: fba:FIC_01344 ribosomal RNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_004343512.1	KEGG: nca:Noca_3540 ABC transporter related; SPTR: ABC transporter related
YP_004343513.1	InterPro IPR014922; KEGG: gfo:GFO_2208 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004343514.1	KEGG: fba:FIC_01557 hypothetical protein; SPTR:  uncharacterized protein
YP_004343515.1	KEGG: sli:Slin_2050 insertion element protein; SPTR:  uncharacterized protein; PFAM:  ATPase subunit of terminase (gpP-like)
YP_004343516.1	KEGG: fjo:Fjoh_1409 major facilitator transporter; SPTR: Major facilitator superfamily MFS_1; PFAM: Sugar (and other) transporter
YP_004343517.1	KEGG: fba:FIC_01011 hypothetical protein; SPTR:  uncharacterized protein
YP_004343518.1	KEGG: tet:TTHERM_00520940 hypothetical protein; SPTR: Chromosome undetermined scaffold_176, whole genome shotgun sequence
YP_004343519.1	KEGG: cbr:CBG02852 Hypothetical protein CBG02852; SPTR:  uncharacterized protein
YP_004343520.1	KEGG: sta:STHERM_c03210 apolipoprotein N-acyltransferase; SPTR: Protein containing KAP family P-loop domain
YP_004343521.1	KEGG: str:Sterm_0025 TPR repeat-containing protein; SPTR: TPR repeat-containing protein
YP_004343522.1	KEGG: pph:Ppha_1056 vir region protein-like protein; SPTR:  uncharacterized protein
YP_004343523.1	InterPro IPR001387; KEGG: cvi:CV_1213 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; PFAM: Helix-turn-helix
YP_004343524.1	KEGG: fjo:Fjoh_0919 hypothetical protein; SPTR:  uncharacterized protein
YP_004343525.1	KEGG: bfo:BRAFLDRAFT_99330 hypothetical protein; SPTR:  uncharacterized protein
YP_004343526.1	KEGG: acp:A2cp1_1320 hypothetical protein; SPTR:  uncharacterized protein
YP_004343527.1	KEGG: chu:CHU_1147 hypothetical protein; SPTR:  uncharacterized protein
YP_004343528.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR011904:IPR000873; KEGG: chu:CHU_2429 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase/ligase; PRIAM: Acetate--CoA ligase; SPTR: Acetyl-coenzyme A synthetase; TIGRFAM: Acetate--CoA ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme; TIGRFAM: acetate--CoA ligase
YP_004343529.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: sli:Slin_2044 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Response regulator receiver domain
YP_004343530.1	COGs: COG0591 Na+/proline symporter; InterPro IPR003661:IPR003594; KEGG: sli:Slin_2045 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004343531.1	KEGG: ddf:DEFDS_1670 hypothetical protein; SPTR:  uncharacterized protein
YP_004343532.1	KEGG: cts:Ctha_1888 hypothetical protein; SPTR:  uncharacterized protein
YP_004343533.1	KEGG: pmc:P9515_07791  endonuclease; SPTR: Exocyst complex subunit 2
YP_004343534.1	KEGG: zpr:ZPR_4143 HlyD family secretion protein; SPTR: HlyD family secretion protein
YP_004343535.1	KEGG: bbe:BBR47_37060 hypothetical protein; SPTR:  uncharacterized protein
YP_004343536.1	InterPro IPR019861; KEGG: cpi:Cpin_6900 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004343537.1	InterPro IPR019734:IPR011659; KEGG: chu:CHU_2606 outer membrane peptidoglycan-associated protein; SPTR: Outer membrane peptidoglycan-associated protein
YP_004343538.1	KEGG: fbc:FB2170_12486 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Acyltransferase
YP_004343539.1	InterPro IPR000601; KEGG: amu:Amuc_1270 hypothetical protein; PFAM: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004343540.1	KEGG: etr:ETAE_1284 hypothetical protein; SPTR:  uncharacterized protein
YP_004343541.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: bth:BT_2566 HIT family protein; PFAM: Histidine triad (HIT) protein; SPTR: HIT family protein; PFAM: HIT domain
YP_004343542.1	COGs: COG0782 Transcription elongation factor; HAMAP: Transcription elongation factor greA; InterPro IPR006359:IPR001437; KEGG: rbi:RB2501_08190 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB domain, prokaryotic; SPTR: Transcription elongation factor; TIGRFAM: Prokaryotic transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_004343543.1	KEGG: rmr:Rmar_2818 hypothetical protein; SPTR: Lipoprotein
YP_004343544.1	KEGG: rmr:Rmar_2817 hypothetical protein; SPTR:  uncharacterized protein
YP_004343545.1	KEGG: rmr:Rmar_2818 hypothetical protein; SPTR: Lipoprotein
YP_004343546.1	InterPro IPR012910:IPR000531; KEGG: rmr:Rmar_2819 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Cna protein B-type domain
YP_004343547.1	KEGG: chu:CHU_0758 4'-phosphopantetheinyl transferase; SPTR: 4'-phosphopantetheinyl transferase superfamily protein
YP_004343548.1	COGs: COG1646 phosphate-binding protein with TIM-barrel fold; InterPro IPR008205:IPR010946; KEGG: chu:CHU_3825 geranylgeranylglyceryl phosphate synthase-like protein; PFAM: Geranylgeranylglyceryl phosphate synthase-like; SPTR: PcrB-like protein; TIGRFAM: Geranylgeranylglyceryl phosphate synthase; Geranylgeranylglyceryl phosphate synthase-like; PFAM: PcrB family; TIGRFAM: geranylgeranylglyceryl phosphate synthase; geranylgeranylglyceryl phosphate synthase
YP_004343549.1	InterPro IPR000601; KEGG: dfe:Dfer_0319 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR: Collagenase, ; PFAM: Pregnancy-associated plasma protein-A; PKD domain
YP_004343550.1	KEGG: tye:THEYE_A1365 F420-non-reducing hydrogenase subunit A, selenocysteine-containing; SPTR:  uncharacterized protein
YP_004343551.1	InterPro IPR011545; KEGG: gfo:GFO_0617 DEAD box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SPTR: DEAD box helicase; PFAM: DEAD/DEAH box helicase
YP_004343552.1	KEGG: lpa:lpa_00966 hypothetical protein; SPTR:  uncharacterized protein
YP_004343553.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR011623:IPR010822; KEGG: lbf:LBF_1008 serine phosphatase RsbU; PFAM: 7TM-DISM receptor, extracellular domain, type 1; Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Probable two-component sensor, ; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; Stage II sporulation protein E (SpoIIE)
YP_004343554.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR004393:IPR002638; KEGG: bfs:BF1400  nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]); PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_004343555.1	KEGG: bth:BT_1561 hypothetical protein; SPTR:  uncharacterized protein
YP_004343556.1	COGs: COG1576 conserved hypothetical protein; HAMAP: SPOUT methyltransferase, predicted; InterPro IPR003742; KEGG: zpr:ZPR_2113 SPOUT methyltransferase superfamily protein; PFAM: SPOUT methyltransferase, predicted; SPTR:  uncharacterized protein; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH
YP_004343557.1	KEGG: chu:CHU_0064 hypothetical protein; SPTR:  uncharacterized protein
YP_004343558.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cpi:Cpin_4185 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004343559.1	InterPro IPR006342; KEGG: sli:Slin_5205 methyltransferase FkbM family; SPTR: LpeA, ; TIGRFAM: Methyltransferase FkbM; TIGRFAM: methyltransferase, FkbM family
YP_004343560.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pcr:Pcryo_0617 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase
YP_004343561.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cbe:Cbei_4711 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004343562.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020019:IPR001451; KEGG: ant:Arnit_2564 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; TIGRFAM: Sialic acid O-acyltransferase, NeuD; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
YP_004343563.1	KEGG: bpa:BPP0125 hypothetical protein; SPTR: WbmT
YP_004343564.1	COGs: COG0438 Glycosyltransferase; KEGG: amt:Amet_3441 hypothetical protein; SPTR:  uncharacterized protein
YP_004343565.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: gyc:GYMC61_3254 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis; PFAM: Polysaccharide biosynthesis protein
YP_004343566.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426:IPR000583:IPR001962; KEGG: tga:TGAM_0001  asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_004343567.1	KEGG: zpr:ZPR_2348 glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1
YP_004343568.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: cbl:CLK_2494 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_004343569.1	KEGG: tad:TRIADDRAFT_52388 hypothetical protein; SPTR: Methyltransferase NSUN5
YP_004343570.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: hmo:HM1_1179 glycosyltransferase, group 1 family protein, PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004343571.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mma:MM_0652 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glucosyltransferase; manually curated; PFAM: Glycosyl transferase 2
YP_004343572.1	InterPro IPR020022; KEGG: abu:Abu_0683  LPS biosynthesis protein WbpG; SPTR:  LPS biosynthesis protein WbpG; TIGRFAM: N-acetyl sugar amidotransferase; TIGRFAM: N-acetyl sugar amidotransferase
YP_004343573.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: rba:RB1819 udp-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: Udp-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase
YP_004343574.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0061 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004343575.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0063 A-glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004343576.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: fbc:FB2170_04390 hypothetical protein; PFAM: Pentapeptide repeat; SPTR:  uncharacterized protein
YP_004343577.1	KEGG: chu:CHU_2263 hypothetical protein; SPTR:  uncharacterized protein
YP_004343578.1	COGs: COG0367 Asparagine synthase (glutamine-hydrolyzing); InterPro IPR006426:IPR000583:IPR001962; KEGG: cpi:Cpin_3710 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; PRIAM: Asparagine synthase (glutamine-hydrolyzing); SPTR: Asparagine synthase (Glutamine-hydrolyzing); TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_004343579.1	InterPro IPR013538; KEGG: fjo:Fjoh_1710 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR:  uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004343580.1	KEGG: pha:PSHAa0535 hypothetical protein; SPTR: Cytochrome c-type biogenesis protein
YP_004343581.1	COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: fba:FIC_01595 PhnB protein; DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: 3-demethylubiquinone-9 3-methyltransferase; PFAM: 3-demethylubiquinone-9 3-methyltransferase
YP_004343582.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: ssa:SSA_0291 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: Retinol dehydrogenase; SPTR: Oxidoreductase, ; PFAM: short chain dehydrogenase
YP_004343583.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: dfe:Dfer_5555 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family
YP_004343584.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; HAMAP: Nucleoside-triphosphatase; InterPro IPR002637:IPR020922; KEGG: cat:CA2559_08816  xanthosine triphosphate pyrophosphatase; PFAM: Ham1-like protein; PRIAM: Nucleoside-triphosphatase; SPTR: Nucleoside-triphosphatase; TIGRFAM: Ham1-like protein; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_004343585.1	COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: fjo:Fjoh_2181 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type
YP_004343586.1	KEGG: bja:bsl4187 hypothetical protein
YP_004343587.1	KEGG: gau:GAU_2098 hypothetical protein; SPTR:  uncharacterized protein
YP_004343588.1	KEGG: chu:CHU_1561 OmpA family outer membrane protein; SPTR: Outer membrane protein, OmpA family
YP_004343589.1	COGs: COG2987 Urocanate hydratase; InterPro IPR000193; KEGG: fjo:Fjoh_1908 urocanate hydratase; PFAM: Urocanase; PRIAM: Urocanate hydratase; SPTR: Urocanate hydratase; PFAM: Urocanase; TIGRFAM: urocanate hydratase
YP_004343590.1	InterPro IPR000601; KEGG: cpi:Cpin_2588 PKD domain containing protein; SMART: PKD; SPTR: PKD domain containing protein
YP_004343591.1	KEGG: ngr:NAEGRDRAFT_72080 hypothetical protein; SPTR: Predicted protein
YP_004343592.1	COGs: COG0148 Enolase; HAMAP: Enolase; InterPro IPR000941:IPR020811:IPR020810; KEGG: chu:CHU_3133 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: Enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_004343593.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR006274:IPR002474:IPR000991; KEGG: fjo:Fjoh_0369 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: Carbamoyl-phosphate synthase (glutamine-hydrolyzing); SPTR: Carbamoyl-phosphate synthetase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_004343594.1	COGs: COG0203 Ribosomal protein L17; HAMAP: Ribosomal protein L17; InterPro IPR000456; KEGG: fba:FIC_01994 LSU ribosomal protein L17p; PFAM: Ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: Ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_004343595.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; HAMAP: DNA-directed RNA polymerase, alpha subunit; InterProIPR011773:IPR011263:IPR011261:IPR011262:IPR 011260; KEGG: zpr:ZPR_3850 DNA-directed RNA polymerase subunit alpha; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_004343596.1	COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR005709:IPR002942:IPR001912; KEGG: phe:Phep_0628 ribosomal protein S4; PFAM: Ribosomal protein S4; RNA-binding S4; SMART: RNA-binding S4; SPTR: 30S ribosomal protein S4; TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_004343597.1	COGs: COG0100 Ribosomal protein S11; InterPro IPR019981:IPR001971; KEGG: fba:FIC_01997 SSU ribosomal protein S11p (S14e); PFAM: Ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_004343598.1	COGs: COG0099 Ribosomal protein S13; InterPro IPR019980:IPR001892; KEGG: fba:FIC_01998 SSU ribosomal protein S13p (S18e); PFAM: Ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_004343599.1	HAMAP: Ribosomal protein L36; InterPro IPR000473; KEGG: fbc:FB2170_02410 ribosomal protein L36; PFAM: Ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: Ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_004343600.1	COGs: COG0361 Translation initiation factor 1 (IF-1); HAMAP: Translation initiation factor IF-1; InterPro IPR004368:IPR006196; KEGG: pgn:PGN_1846 translation initiation factor IF-1; PFAM: S1, IF1 type; SPTR: Bacterial translation initiation factor 1 (BIF-1); TIGRFAM: Translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_004343601.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: bth:BT_2707 preprotein translocase subunit SecY; PFAM: SecY protein; SPTR: Preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_004343602.1	COGs: COG0200 Ribosomal protein L15; InterPro IPR005749; KEGG: fbc:FB2170_02425  50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_004343603.1	InterPro IPR005996:IPR000517; KEGG: pdi:BDI_2362 50S ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e, conserved region; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_004343604.1	COGs: COG0098 Ribosomal protein S5; InterPro IPR005712:IPR013810:IPR005324; KEGG: phe:Phep_0619 30S ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal; SPTR: 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_004343605.1	COGs: COG0256 Ribosomal protein L18; InterPro IPR004389:IPR005484; KEGG: coc:Coch_1163 ribosomal protein L18; PFAM: Ribosomal protein L18/L5; SPTR: 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_004343606.1	COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR019906:IPR020040; KEGG: fjo:Fjoh_0382 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_004343607.1	COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: zpr:ZPR_3861 30S ribosomal protein S8 (RpsH); PFAM: Ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: Ribosomal protein S8
YP_004343608.1	COGs: COG0199 Ribosomal protein S14; HAMAP: 30S ribosomal protein S14; InterPro IPR001209; KEGG: sli:Slin_5774 ribosomal protein S14; PFAM: Ribosomal protein S14; SPTR: Ribosomal protein S14; PFAM: Ribosomal protein S14p/S29e
YP_004343609.1	COGs: COG0094 Ribosomal protein L5; KEGG: fps:FP1327 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_004343610.1	COGs: COG0198 Ribosomal protein L24; InterPro IPR003256:IPR005824; KEGG: pgn:PGN_1857 50S ribosomal protein L24; PFAM: KOW; SMART: KOW; SPTR: 50S ribosomal protein L24; TIGRFAM: Ribosomal protein L24; PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_004343611.1	COGs: COG0093 Ribosomal protein L14; InterPro IPR005745:IPR000218; KEGG: zpr:ZPR_3865 50S ribosomal protein L14; PFAM: Ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_004343612.1	COGs: COG0186 Ribosomal protein S17; InterPro IPR019984:IPR000266; KEGG: fbc:FB2170_02475 30S ribosomal protein S17; PFAM: Ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_004343613.1	InterPro IPR001854; KEGG: sli:Slin_5779 ribosomal protein L29; PFAM: Ribosomal protein L29; SPTR: Ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_004343614.1	COGs: COG0197 Ribosomal protein L16/L10E; HAMAP: Ribosomal protein L16; InterPro IPR000114:IPR016180; KEGG: phe:Phep_0609 ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_004343615.1	COGs: COG0092 Ribosomal protein S3; InterProIPR005704:IPR004087:IPR008282:IPR004044:IPR 001351; KEGG: phe:Phep_0608 ribosomal protein S3; PFAM: Ribosomal protein S3, C-terminal; K Homology, type 2; Ribosomal protein S3, N-terminal; SMART: K Homology; SPTR: 30S ribosomal protein S3; TIGRFAM: Ribosomal protein S3, bacterial; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_004343616.1	COGs: COG0091 Ribosomal protein L22; InterPro IPR005727:IPR001063; KEGG: fbc:FB2170_02495 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_004343617.1	COGs: COG0185 Ribosomal protein S19; InterPro IPR005732:IPR002222; KEGG: rmr:Rmar_0846 ribosomal protein S19; PFAM: Ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_004343618.1	COGs: COG0090 Ribosomal protein L2; InterPro IPR005880:IPR002171; KEGG: bvu:BVU_0802 50S ribosomal protein L2; PFAM: Ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_004343619.1	COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: chu:CHU_3160 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: LSU ribosomal protein L23P; PFAM: Ribosomal protein L23
YP_004343620.1	COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: phe:Phep_0603 ribosomal protein L4/L1e; PFAM: Ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family
YP_004343621.1	COGs: COG0087 Ribosomal protein L3; InterPro IPR019927:IPR000597; KEGG: bfs:BF4003 50S ribosomal protein L3; PFAM: Ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_004343622.1	COGs: COG0051 Ribosomal protein S10; HAMAP: Ribosomal protein S10 subgroup; InterPro IPR005731:IPR001848; KEGG: zpr:ZPR_3876 30S ribosomal protein S10; PFAM: Ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: Ribosomal protein S10 subgroup; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_004343623.1	COGs: COG0480 Translation elongation factors (GTPase); InterProIPR004540:IPR005225:IPR000795:IPR004161:IPR 005517:IPR000640; KEGG: phe:Phep_0597 elongation factor G; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; SPTR: Elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004343624.1	COGs: COG0049 Ribosomal protein S7; InterPro IPR005717:IPR000235; KEGG: coc:Coch_1144 30S ribosomal protein S7; PFAM: Ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_004343625.1	COGs: COG0048 Ribosomal protein S12; InterPro IPR005679:IPR006032; KEGG: zpr:ZPR_3879 30S ribosomal protein S12; PFAM: Ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_004343626.1	COGs: COG5279 Uncharacterized protein involved in cytokinesis contains TGc (transglutaminase/protease-like) domain; InterPro IPR002931; KEGG: bfo:BRAFLDRAFT_83241 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR:  uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_004343627.1	KEGG: cat:CA2559_03245 hypothetical protein; SPTR:  uncharacterized protein
YP_004343628.1	KEGG: mbr:MONBRDRAFT_12802 hypothetical protein; SPTR: Predicted protein
YP_004343629.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751:IPR013747; KEGG: zpr:ZPR_3911 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-(Acyl carrier protein) synthase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004343630.1	KEGG: cpi:Cpin_4197 peptidase domain protein; SPTR:  uncharacterized protein
YP_004343631.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR011658:IPR001764:IPR002772; KEGG: cma:Cmaq_1217 glycoside hydrolase 3 protein; PFAM: Glycoside hydrolase, family 3, C-terminal; Glycoside hydrolase, family 3, N-terminal; PRIAM: Beta-glucosidase; SMART: PA14; SPTR: Xylosidase; PFAM: Glycosyl hydrolase 3 C terminal domain; Glycosyl hydrolase 3 N terminal domain; PA14 domain
YP_004343632.1	COGs: COG3669 Alpha-L-fucosidase; InterPro IPR000933; KEGG: zpr:ZPR_4172  exported hydrolase; PFAM: Glycoside hydrolase, family 29; SMART: Glycoside hydrolase, family 29; SPTR:  exported hydrolase; PFAM: Alpha-L-fucosidase
YP_004343633.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR001155; KEGG: vsp:VS_II1479 NADH:flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; PRIAM: 12-oxophytodienoate reductase; SPTR: NADH:flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase / NADH oxidase
YP_004343634.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR014182:IPR013154:IPR013149; KEGG: fjo:Fjoh_3309 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc-binding domain protein; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 1; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase
YP_004343635.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: pfo:Pfl01_3450 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004343636.1	COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_4681 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004343637.1	KEGG: sus:Acid_3961 hypothetical protein; SPTR:  uncharacterized protein
YP_004343638.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Sporulation stage II, protein E C-terminal; SPTR: Serine/threonine kinase with GAF domain; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004343639.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: phe:Phep_1437 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase
YP_004343640.1	InterPro IPR019115; KEGG: phe:Phep_2585 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200
YP_004343641.1	KEGG: phe:Phep_0205 hypothetical protein; SPTR:  uncharacterized protein
YP_004343642.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424; KEGG: zpr:ZPR_4270 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; PFAM: Single-strand binding protein family
YP_004343643.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424; KEGG: zpr:ZPR_4270 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; PFAM: Single-strand binding protein family
YP_004343644.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR011344:IPR000424; KEGG: fbc:FB2170_04360 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004343645.1	KEGG: plm:Plim_3487 hypothetical protein; SPTR:  uncharacterized protein
YP_004343646.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004343647.1	KEGG: chu:CHU_1296 hypothetical protein; SPTR:  uncharacterized protein
YP_004343648.1	KEGG: tet:TTHERM_00270360 hypothetical protein; SPTR: Two component transcriptional regulator, AraC family
YP_004343649.1	KEGG: hch:HCH_03106 heat repeat-containing protein; SPTR: Protein containing HEAT repeats
YP_004343650.1	KEGG: afl:Aflv_2505 hypothetical protein; SPTR: Predicted protein
YP_004343651.1	KEGG: chu:CHU_1857 hypothetical protein; SPTR:  uncharacterized protein
YP_004343652.1	COGs: COG3708 conserved hypothetical protein; InterPro IPR010499; KEGG: coc:Coch_1918 transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding; SPTR: Transcription activator effector binding; PFAM: Bacterial transcription activator, effector binding domain
YP_004343653.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: bba:Bd1175 nucleoside-diphosphate-sugar epimerase; SPTR: Nucleoside-diphosphate-sugar epimerases; PFAM: Semialdehyde dehydrogenase, NAD binding domain
YP_004343654.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR011123:IPR010559; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; SPTR: Possible sensor protein; PFAM: Y_Y_Y domain; Histidine kinase
YP_004343655.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fbc:FB2170_02880 response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343656.1	COGs: COG0550 Topoisomerase IA; InterProIPR005738:IPR006154:IPR003601:IPR003602:IPR 006171:IPR013497; KEGG: dfe:Dfer_0272 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase III; TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid
YP_004343657.1	COGs: COG0262 Dihydrofolate reductase; InterPro IPR001796; KEGG: dap:Dacet_1394 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain; SPTR: Dihydrofolate reductase; PFAM: Dihydrofolate reductase
YP_004343658.1	KEGG: ele:Elen_1933 hypothetical protein; SPTR:  uncharacterized protein
YP_004343659.1	KEGG: pmz:HMPREF0659_A5808  lipoprotein; SPTR:  uncharacterized protein
YP_004343660.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: chu:CHU_0130 N-acyl-L-amino acid amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_004343661.1	KEGG: zpr:ZPR_0495 acyl-protein synthetase, LuxE; SPTR: Acyl-protein synthetase, LuxE; PFAM: Acyl-protein synthetase, LuxE
YP_004343662.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: fjo:Fjoh_4969 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Sensor protein RprX; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004343663.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: chu:CHU_2634 NADH oxidase/rhodanese-related sulfurtransferase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: NADH oxidase/rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain
YP_004343664.1	KEGG: dfe:Dfer_0457 hypothetical protein; SPTR:  uncharacterized protein
YP_004343665.1	KEGG: pwa:Pecwa_1722 RimK domain protein ATP-grasp; SPTR:  uncharacterized protein
YP_004343666.1	KEGG: fjo:Fjoh_0229 histidine kinase; SPTR: Multi-sensor hybrid histidine kinase
YP_004343667.1	KEGG: ote:Oter_0596 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug
YP_004343668.1	COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase; InterPro IPR013027; KEGG: cat:CA2559_00750 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004343669.1	KEGG: htu:Htur_3524 glycosyl transferase 39; SPTR:  uncharacterized protein
YP_004343670.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: fbc:FB2170_02825  SpoU rRNA methylase; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: tRNA/rRNA methyltransferase; PFAM: SpoU rRNA Methylase
YP_004343671.1	COGs: COG0249 Mismatch repair ATPase (MutS family); HAMAP: DNA mismatch repair protein MutS, type 1; InterProIPR005748:IPR007696:IPR000432:IPR007695:IPR 007860:IPR007861; KEGG: fps:FP0395 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS, type 1; PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_004343672.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: cat:CA2559_07355 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase
YP_004343673.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_1834 LytTR family two component transcriptional regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343674.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: fjo:Fjoh_1835 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_004343675.1	InterPro IPR012910; KEGG: dfe:Dfer_5310 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug domain protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004343676.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5311 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_004343677.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5312 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343678.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410:IPR014043; KEGG: fps:FP0408 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; PRIAM: [Acyl-carrier-protein] S-malonyltransferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_004343679.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR005475:IPR005476; KEGG: chu:CHU_2680 pyruvate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase E1 component; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004343680.1	COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730; KEGG: cpi:Cpin_3760 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein domain
YP_004343681.1	COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR014730:IPR014731; KEGG: cpi:Cpin_3759 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SPTR: Electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain
YP_004343682.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729:IPR001943; KEGG: phe:Phep_2055 protein of unknown function DUF151; PFAM: Protein of unknown function DUF151; UvrB/UvrC protein; SPTR: Protein of hypothetical function DUF151; PFAM: Uncharacterised ACR, COG1259; UvrB/uvrC motif
YP_004343683.1	InterPro IPR002884:IPR014867; KEGG: sli:Slin_3459 spore coat protein CotH; PFAM: Spore coat protein CotH; Proprotein convertase, P; SPTR: Spore coat protein CotH; PFAM: Proprotein convertase P-domain; CotH protein
YP_004343684.1	KEGG: ant:Arnit_2939 hypothetical protein; SPTR:  uncharacterized protein
YP_004343685.1	COGs: COG0207 Thymidylate synthase; HAMAP: Thymidylate synthase; InterPro IPR000398; KEGG: chu:CHU_1289 thymidylate synthase; PFAM: Thymidylate synthase; PRIAM: Thymidylate synthase; SPTR: Thymidylate synthase; TIGRFAM: Thymidylate synthase; PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_004343686.1	COGs: COG0514 Superfamily II DNA helicase; InterProIPR006293:IPR018329:IPR014001:IPR001650:IPR 002121:IPR011545:IPR018982; KEGG: pdi:BDI_2394 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; RQC domain; Helicase/RNase D C-terminal, HRDC domain; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; SPTR: ATP-dependent DNA helicase recQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family
YP_004343687.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019822:IPR002033; KEGG: fjo:Fjoh_0283 sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; SPTR: Sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent protein translocase (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_004343688.1	KEGG: chu:CHU_1641 hypothetical protein; SPTR:  uncharacterized protein
YP_004343689.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: cpi:Cpin_0868 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter-related protein; PFAM: ABC transporter
YP_004343690.1	KEGG: ere:EUBREC_0477 galactose/glucose-binding lipoprotein; SPTR: Monosaccharide ABC transporter substrate-binding protein, CUT2 family TC 3.A.1.2.-)
YP_004343692.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: chu:CHU_0166 outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein, OMP85 family
YP_004343693.1	KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor; SPTR: TonB-dependent siderophore receptor
YP_004343694.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: fjo:Fjoh_0999 AAA ATPase; SPTR: AAA ATPase; PFAM: PIF1 helicase
YP_004343695.1	KEGG: dya:Dyak_GE13561 GE13561 gene product from transcript GE13561-RA; SPTR:  uncharacterized protein
YP_004343696.1	COGs: COG0192 S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: dfe:Dfer_3203 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase
YP_004343697.1	KEGG: tet:TTHERM_00014920 Kinesin motor domain containing protein; SPTR: Kinesin motor domain containing protein
YP_004343698.1	InterPro IPR005490; KEGG: fjo:Fjoh_2219 hypothetical protein; PFAM: YkuD domain; SPTR: Hypothetical lipoprotein; PFAM: L,D-transpeptidase catalytic domain
YP_004343699.1	KEGG: sgr:SGR_6874 hypothetical protein; SPTR:  uncharacterized protein
YP_004343700.1	KEGG: pfh:PFHG_01098 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004343701.1	KEGG: bcb:BCB4264_A1151 hypothetical protein; SPTR:  uncharacterized protein
YP_004343702.1	COGs: COG3275  regulator of cell autolysis; KEGG: fjo:Fjoh_0580 signal transduction histidine kinase, LytS; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_004343703.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_3519 hypothetical protein; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343704.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: fjo:Fjoh_0578 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family; TC 2.A.37
YP_004343705.1	KEGG: coc:Coch_0300 hypothetical protein; SPTR: Lipoprotein
YP_004343706.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153; KEGG: fjo:Fjoh_4708 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; SPTR: Sodium/hydrogen exchanger; PFAM: Sodium/hydrogen exchanger family
YP_004343707.1	KEGG: ter:Tery_0976 hypothetical protein; SPTR:  uncharacterized protein
YP_004343708.1	KEGG: fjo:Fjoh_1571 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF419)
YP_004343709.1	InterPro IPR006121; KEGG: sli:Slin_1516 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: MerP, ; PFAM: Heavy-metal-associated domain
YP_004343710.1	InterPro IPR012910; KEGG: dfe:Dfer_3109 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004343711.1	KEGG: rno:362096 senataxin; SPTR:  uncharacterized protein
YP_004343712.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: fjo:Fjoh_0931 ferric uptake regulator family protein; SPTR: Ferric (Fe3+) uptake regulator protein; PFAM: Ferric uptake regulator family
YP_004343713.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: cat:CA2559_09106 cobalt-zinc-cadmium resistance protein CzcD; PFAM: Cation efflux protein; SPTR: Cobalt-zinc-cadmium resistance protein czcD; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004343714.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR014824:IPR001075; KEGG: cpi:Cpin_0722 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; NIF system FeS cluster assembly, NifU-like scaffold, N-terminal; SPTR: Nitrogen-fixing NifU domain protein; PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain
YP_004343715.1	InterPro IPR012910; KEGG: ank:AnaeK_0281 hypothetical protein; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004343716.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR005835; KEGG: phe:Phep_2062 mannose-1-phosphate guanylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_004343717.1	KEGG: cpi:Cpin_6604 hypothetical protein; SPTR:  uncharacterized protein; PFAM: SprT-like family
YP_004343718.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: dfe:Dfer_3962 protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; SPTR:  uncharacterized protein; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_004343719.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593:IPR003439; KEGG: phe:Phep_3462 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004343720.1	KEGG: fjo:Fjoh_3982 hypothetical protein; SPTR:  uncharacterized protein
YP_004343721.1	KEGG: fbc:FB2170_13046 hypothetical protein; SPTR:  uncharacterized protein
YP_004343722.1	COGs: COG4430 conserved hypothetical protein; InterPro IPR014922; KEGG: dfe:Dfer_4645 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004343723.1	KEGG: phe:Phep_1539 hypothetical protein; SPTR:  transmembrane protein; PFAM: Predicted membrane protein (DUF2154)
YP_004343724.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: cpi:Cpin_6587 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR: FimS family signal transduction ATPase; PFAM: Histidine kinase
YP_004343725.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_6586 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343726.1	KEGG: sss:SSUSC84_0665 hypothetical protein; SPTR: Predicted permease
YP_004343727.1	InterPro IPR000601; KEGG: fjo:Fjoh_4051 PKD domain-containing protein; PFAM: PKD; SMART: PKD; SPTR: CHU large protein; uncharacterized
YP_004343728.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004821:IPR004820; KEGG: dfe:Dfer_4553 RfaE bifunctional protein; PFAM: Cytidylyltransferase; SPTR: RfaE bifunctional protein; TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain
YP_004343729.1	InterPro IPR005242; KEGG: zpr:ZPR_4521  transmembrane protein; SPTR:  transmembrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_004343730.1	COGs: COG0853 Aspartate 1-decarboxylase; HAMAP: Aspartate decarboxylase; InterPro IPR003190; KEGG: chu:CHU_3834 aspartate alpha-decarboxylase; PFAM: Aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: Aspartate decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_004343731.1	COGs: COG0414 Panthothenate synthetase; HAMAP: Pantoate-beta-alanine ligase; InterPro IPR003721; KEGG: pgi:PG0477 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: Pantoate-beta-alanine ligase; manually curated; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_004343732.1	COGs: COG0297 Glycogen synthase; InterPro IPR013534; KEGG: pdi:BDI_0212 glycosyl transferase; PFAM: Starch synthase, catalytic domain; PRIAM: Starch synthase; SPTR: Glycosyltransferase, family 5; PFAM: Starch synthase catalytic domain
YP_004343733.1	KEGG: pdi:BDI_2348 hypothetical protein; SPTR:  uncharacterized protein
YP_004343734.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; InterPro IPR005855:IPR000583:IPR001347; KEGG: phe:Phep_0131 glucosamine--fructose-6-phosphate aminotransferase; PFAM: Sugar isomerase (SIS); Glutamine amidotransferase, class-II; PRIAM: Glutamine--fructose-6-phosphate transaminase (isomerizing); SPTR: Glutamine--fructose-6-phosphate transaminase, isomerizing; TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_004343735.1	KEGG: cpi:Cpin_1130 hypothetical protein; SPTR:  uncharacterized protein
YP_004343736.1	KEGG: fps:FP0278 hypothetical protein; SPTR:  uncharacterized protein
YP_004343737.1	KEGG: api:100164894 similar to sugar transporter; SPTR:  uncharacterized protein
YP_004343738.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: pdi:BDI_1481  peptidase; SPTR: Prolyl oligopeptidase; PFAM: Prolyl oligopeptidase
YP_004343739.1	COGs: COG1033 exporter of the RND superfamily protein; KEGG: fps:FP2251 exporter; SPTR: Membrane protein, ; PFAM: MMPL family
YP_004343740.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907:IPR005835; KEGG: fjo:Fjoh_0331 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucose-1-phosphate thymidylyltransferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_004343741.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: fps:FP2405 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Geranyltranstransferase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004343742.1	KEGG: osa:4351682 hypothetical protein; SPTR:  uncharacterized protein
YP_004343743.1	InterPro IPR017825; KEGG: cpi:Cpin_5617 lycopene cyclase domain protein; SPTR:  uncharacterized protein; TIGRFAM: Lycopene cyclase domain; TIGRFAM: lycopene cyclase domain
YP_004343744.1	InterPro IPR006694; KEGG: dfe:Dfer_2033 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Gamma-carotene hydroxylase; PFAM: Fatty acid hydroxylase superfamily
YP_004343745.1	InterPro IPR007354; KEGG: bse:Bsel_2209 membrane protein-like protein; PFAM: Protein of unknown function DUF422; SPTR: Membrane protein, ; PFAM: Protein of unknown function (DUF422)
YP_004343746.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR019734:IPR001932:IPR001440:IPR010822; KEGG: clj:CLJU_c28300 hypothetical protein; PFAM: Sporulation stage II, protein E C-terminal; Tetratricopeptide TPR-1; SMART: Protein phosphatase 2C-related; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases, ; PFAM: Tetratricopeptide repeat; Stage II sporulation protein E (SpoIIE)
YP_004343747.1	COGs: COG2262 GTPase; InterPro IPR016496:IPR005225:IPR002917; KEGG: pdi:BDI_3288 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; SPTR: GTP-binding protein HflX; TIGRFAM: GTP-binding protein, HflX; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_004343748.1	InterPro IPR003088; KEGG: chu:CHU_3841 cytochrome c variant; PFAM: Cytochrome c, class I; SPTR:  uncharacterized protein; PFAM: Cytochrome c
YP_004343749.1	KEGG: dfe:Dfer_3253 hypothetical protein; SPTR:  uncharacterized protein
YP_004343750.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR013108:IPR006680; KEGG: gfo:GFO_0783 metal-dependent hydrolase superfamily protein; PFAM: Amidohydrolase 1; Amidohydrolase 3; SPTR: Metal-dependent hydrolase superfamily protein; PFAM: Amidohydrolase
YP_004343751.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR006680; KEGG: cat:CA2559_12683 predicted amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Predicted amidohydrolase
YP_004343752.1	KEGG: cat:CA2559_03270 hypothetical protein; SPTR:  uncharacterized protein
YP_004343753.1	COGs: COG0605 Superoxide dismutase; InterPro IPR019831:IPR019832; KEGG: nve:NEMVE_v1g231554 hypothetical protein; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; SPTR: Superoxide dismutase; PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_004343754.1	KEGG: cat:CA2559_01070 hypothetical protein; SPTR:  uncharacterized protein
YP_004343755.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: cts:Ctha_1328 nitrogen-fixing NifU domain protein; PFAM: NIF system FeS cluster assembly, NifU, C-terminal; SPTR: Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain
YP_004343756.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR002744:IPR019591; KEGG: rbi:RB2501_08430 ATP-binding protein, Mrp/Nbp35 family protein; PFAM: ATPase-like, ParA/MinD; Protein of unknown function DUF59; SPTR: Mrp/Nbp35 family ATP-binding protein; PFAM: ParA/MinD ATPase like; Domain of unknown function DUF59; Anion-transporting ATPase
YP_004343757.1	KEGG: chu:CHU_3259 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004343758.1	KEGG: chu:CHU_3441 beta-glycosidase-like protein; SPTR: CHU large protein; uncharacterized
YP_004343759.1	InterPro IPR019861; KEGG: coc:Coch_1698 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004343760.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: gfo:GFO_3537 OmpA/MotB family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB family outer membrane protein; PFAM: OmpA family
YP_004343761.1	KEGG: fjo:Fjoh_0363 hypothetical protein; SPTR:  uncharacterized protein
YP_004343762.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); HAMAP: Queuosine biosynthesis protein; InterPro IPR003699; KEGG: fjo:Fjoh_0507 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_004343763.1	COGs: COG0130 Pseudouridine synthase; HAMAP: tRNA pseudouridine synthase B; InterPro IPR002501:IPR014780; KEGG: gfo:GFO_3038 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; SPTR: TRNA pseudouridine synthase B; TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_004343764.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; HAMAP: Bacitracin resistance protein BacA; InterPro IPR003824; KEGG: fba:FIC_00937 undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_004343765.1	KEGG: fps:FP2359 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3098)
YP_004343766.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: cat:CA2559_04535  cell division protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Cell division permease, FtsX; PFAM: Predicted permease
YP_004343767.1	InterPro IPR007372; KEGG: cat:CA2559_08246 YCE I like family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YCE I like family protein; PFAM: YceI-like domain
YP_004343768.1	COGs: COG0527 Aspartokinase; InterPro IPR001048:IPR001341; KEGG: phe:Phep_2925 aspartate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: Aspartate kinase; SPTR: Aspartokinase; TIGRFAM: Aspartate kinase domain; PFAM: Amino acid kinase; TIGRFAM: aspartate kinase
YP_004343769.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: fps:FP0546 OmpA family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Probable outer membrane protein, OmpA family; PFAM: OmpA family
YP_004343770.1	KEGG: sar:SAR0618  transport system lipoprotein; SPTR:  uncharacterized protein
YP_004343771.1	InterPro IPR000551; KEGG: cpi:Cpin_5621 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family
YP_004343772.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_5961 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004343773.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937:IPR014105; KEGG: sli:Slin_5960 phytoene desaturase; PFAM: Amine oxidase; SPTR: Phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase
YP_004343774.1	COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: chu:CHU_2036 phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Phytoene synthase; PFAM: Squalene/phytoene synthase
YP_004343775.1	COGs: COG1443 Isopentenyldiphosphate isomerase; HAMAP: Isopentenyl-diphosphate Delta-isomerase; InterPro IPR000086:IPR011876; KEGG: rbi:RB2501_02010  isopentenyl-diphosphate delta-isomerase; PFAM: NUDIX hydrolase domain; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: Isopentenyl-diphosphate delta-isomerase, type 1; TIGRFAM: Isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1
YP_004343776.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: sli:Slin_1005 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004343778.1	KEGG: cla:Cla_0037 cation ABC transporter, permease; SPTR: Cation ABC transporter, permease
YP_004343779.1	COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR006050:IPR005101; KEGG: dfe:Dfer_4249 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase
YP_004343780.1	KEGG: pfh:PFHG_03984 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004343781.1	KEGG: cpi:Cpin_2225 hypothetical protein; SPTR:  uncharacterized protein
YP_004343782.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR001093:IPR000644:IPR005990; KEGG: fbc:FB2170_00960  inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; PRIAM: IMP dehydrogenase; SMART: Cystathionine beta-synthase, core; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: IMP dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_004343783.1	InterPro IPR000297; KEGG: chu:CHU_0192 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Possible peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_004343784.1	InterPro IPR015391:IPR000297; KEGG: phe:Phep_0489 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SurA N-terminal; SPTR: PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_004343785.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: fps:FP1166 MoxR family ATPase; PFAM: ATPase, AAA-3; SPTR: Methanol dehydrogenase regulatory protein (MoxR); PFAM: ATPase associated with various cellular activities (AAA)
YP_004343786.1	KEGG: fjo:Fjoh_1783 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004343787.1	COGs: COG2912 conserved hypothetical protein; KEGG: phe:Phep_0284 hypothetical protein; SPTR:  uncharacterized protein
YP_004343788.1	COGs: COG1505 Serine protease of the peptidase S9A; InterPro IPR004106; KEGG: kko:Kkor_1495 prolyl oligopeptidase; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; PRIAM: Prolyl oligopeptidase; SPTR: Peptidase S9, prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase
YP_004343789.1	InterPro IPR003409; KEGG: ptm:GSPATT00033308001 hypothetical protein; PFAM: MORN motif; SPTR: Chromosome undetermined scaffold_9, whole genome shotgun sequence; PFAM: MORN repeat
YP_004343790.1	KEGG: cno:NT01CX_1673 hypothetical protein; SPTR:  uncharacterized protein
YP_004343791.1	KEGG: svo:SVI_2711 hypothetical protein; SPTR:  uncharacterized protein
YP_004343792.1	InterPro IPR018060; KEGG: phe:Phep_1278 helix-turn-helix-domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein AraC type; PFAM: M protein trans-acting positive regulator (MGA) HTH domain
YP_004343793.1	COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076; KEGG: sli:Slin_2326 monooxygenase FAD-binding protein; PFAM: FAD dependent oxidoreductase; SPTR: Monooxygenase FAD-binding protein; PFAM: FAD binding domain
YP_004343794.1	COGs: COG2346 Truncated hemoglobins; InterPro IPR001486; KEGG: mlo:mlr0267 hypothetical protein; PFAM: Globin, truncated bacterial-like; SPTR: Globin; PFAM: Bacterial-like globin
YP_004343795.1	COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR013520:IPR004013:IPR011708:IPR004365:IPR 006055:IPR003141:IPR004805; KEGG: phe:Phep_0866 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Exonuclease, RNase T/DNA polymerase III; Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: Polymerase/histidinol phosphatase, N-terminal; Exonuclease; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; Exonuclease; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_004343796.1	InterPro IPR011467; KEGG: coc:Coch_0372 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004343797.1	InterPro IPR011467; KEGG: cat:CA2559_12918 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004343798.1	InterPro IPR011467; KEGG: coc:Coch_0372 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004343799.1	KEGG: cyc:PCC7424_0863 tetratricopeptide TPR_2 repeat protein; SPTR: Predicted exonuclease of the beta-lactamase fold involved in RNA processing
YP_004343800.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; HAMAP: Formylmethionine deformylase; InterPro IPR000181; KEGG: fbc:FB2170_00820 peptide deformylase; PFAM: Formylmethionine deformylase; PRIAM: Peptide deformylase; SPTR: Peptide deformylase; TIGRFAM: Formylmethionine deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_004343801.1	COGs: COG0816 endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); HAMAP: Resolvase, holliday junction-type, YqgF-like; InterPro IPR005227:IPR006641; KEGG: cpi:Cpin_1903 Holliday junction resolvase YqgF; PFAM: Resolvase, holliday junction-type, YqgF-like; SMART: Resolvase, RNase H-like fold; SPTR:  Holliday junction resolvase; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; manually curated; PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF
YP_004343803.1	KEGG: hmg:100201009 similar to predicted protein
YP_004343804.1	COGs: COG2171 Tetrahydrodipicolinate N-succinyltransferase; InterPro IPR001451; KEGG: chu:CHU_2022 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; PRIAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; SPTR: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_004343805.1	InterPro IPR004919; KEGG: ana:alr1266 hypothetical protein; PFAM: Protein of unknown function DUF262; SPTR: Alr1266 protein; PFAM: Protein of unknown function DUF262
YP_004343806.1	KEGG: ehi:EHI_089430 hypothetical protein; SPTR:  uncharacterized protein
YP_004343807.1	COGs: COG1048 Aconitase A; InterPro IPR001030:IPR000573:IPR006248; KEGG: fps:FP1164 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; PRIAM: Aconitate hydratase; SPTR: Aconitate hydratase; TIGRFAM: Aconitase, mitochondrial-like; PFAM: Aconitase C-terminal domain; Aconitase (aconitate hydratase); TIGRFAM: aconitate hydratase, mitochondrial
YP_004343808.1	KEGG: ath:AT3G52050 5'-3' exonuclease; SPTR:  uncharacterized protein
YP_004343809.1	KEGG: dre:565759 novel protein similar to vertebrate interferon induced with helicase C domain 1 (IFIH1)
YP_004343810.1	COGs: COG1049 Aconitase B; InterPro IPR015929:IPR001030; KEGG: fjo:Fjoh_1951 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; PFAM: Aconitase B, N-terminal, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; PRIAM: Aconitate hydratase; SPTR: Aconitate hydratase 2; PFAM: Aconitate B N-terminal domain; Aconitase (aconitate hydratase); Aconitate hydratase 2 N-terminus; TIGRFAM: aconitate hydratase 2
YP_004343811.1	KEGG: cbr:CBG16631 Hypothetical protein CBG16631; SPTR:  lipoprotein
YP_004343812.1	KEGG: nve:NEMVE_v1g225762 hypothetical protein; SPTR: Predicted protein
YP_004343813.1	KEGG: bpu:BPUM_1993 histidinol-phosphate aminotransferase; SPTR:  uncharacterized protein
YP_004343814.1	KEGG: ljf:FI9785_1508 hypothetical protein; SPTR: ABC superfamily ATP binding cassette transporter, binding protein
YP_004343815.1	KEGG: cpi:Cpin_1441 hypothetical protein; SPTR:  uncharacterized protein
YP_004343816.1	KEGG: acd:AOLE_00830 small-conductance mechanosensitive channel; SPTR: Small-conductance mechanosensitive channel
YP_004343817.1	KEGG: ftw:FTW_0320 hypothetical protein; SPTR:  uncharacterized protein
YP_004343818.1	KEGG: pmx:PERMA_1542 signal transduction response regulator; SPTR:  uncharacterized protein
YP_004343819.1	KEGG: xtr:733929 calpain 8; SPTR:  uncharacterized protein
YP_004343820.1	KEGG: rty:RT0832 type II citrate synthase; SPTR: Citrate synthase
YP_004343821.1	KEGG: api:100159478 similar to CG14608 CG14608-PB; SPTR: Histidinol phosphate phosphatase HisJ family
YP_004343822.1	InterPro IPR013431; KEGG: ote:Oter_0312 hypothetical protein; SPTR: Cell wall associated biofilm protein; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004343823.1	InterPro IPR006558; KEGG: sli:Slin_4723 NHL repeat containing protein; SMART: LamG-like jellyroll fold; SPTR: NHL repeat containing protein
YP_004343824.1	KEGG: fjo:Fjoh_1189 regulator of chromosome condensation, RCC1; SPTR: Regulator of chromosome condensation, RCC1
YP_004343826.1	KEGG: gur:Gura_1112 LamG domain-containing protein; SPTR: LamG domain protein jellyroll fold domain protein
YP_004343827.1	KEGG: ecu:ECU08_1710 hypothetical protein; SPTR:  uncharacterized protein ECU08_1710
YP_004343828.1	KEGG: sde:Sde_2827 arabinogalactan endo-1,4-beta-galactosidase; SPTR:  uncharacterized protein
YP_004343829.1	KEGG: cac:CA_C0747 ErfK family protein; SPTR: Foldase PrsA
YP_004343830.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5645 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343831.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR001440:IPR010559:IPR003594:IPR019734; KEGG: phe:Phep_3413 histidine kinase internal region; PFAM: Signal transduction histidine kinase, internal region; Tetratricopeptide TPR-1; ATPase-like, ATP-binding domain; SPTR:  two-component regulator sensor kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004343832.1	KEGG: tac:Ta0953m ATPase; SPTR: Transcriptional regulator, gvpD related protein
YP_004343833.1	KEGG: pcb:PC000308.04.0 hypothetical protein; SPTR: Phosphatidylinositol-4-phosphate 5-kinase
YP_004343834.1	KEGG: chu:CHU_0515 leucine-rich repeat-containing protein; SPTR: Internalin-related protein
YP_004343835.1	KEGG: ptm:GSPATT00029150001 hypothetical protein; SPTR:  uncharacterized protein
YP_004343836.1	COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: aco:Amico_0321 protein of unknown function DUF2196; PFAM: Protein of unknown function DUF2196; SPTR:  uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein
YP_004343838.1	KEGG: pbe:PB000100.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004343839.1	COGs: COG0360 Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; InterPro IPR020814:IPR000529; KEGG: fba:FIC_01516 SSU ribosomal protein S6p; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_004343840.1	COGs: COG0238 Ribosomal protein S18; HAMAP: Ribosomal protein S18; InterPro IPR001648; KEGG: fbc:FB2170_13603 ribosomal protein S18; PFAM: Ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: Ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_004343841.1	COGs: COG0359 Ribosomal protein L9; HAMAP: Ribosomal protein L9, bacteria/chloroplast; InterPro IPR020070:IPR020069:IPR020594; KEGG: phe:Phep_0741 ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; SPTR: 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_004343842.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: fps:FP1790 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Genome sequencing data, contig C325; PFAM: AhpC/TSA family
YP_004343843.1	KEGG: aba:Acid345_4585 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004343844.1	KEGG: pdi:BDI_1531  metal-dependent hydrolase; SPTR:  metal-dependent hydrolase
YP_004343845.1	InterPro IPR007492; KEGG: sli:Slin_5746 response regulator receiver protein; PFAM: LytTr, DNA-binding domain; SPTR:  uncharacterized protein; PFAM: LytTr DNA-binding domain
YP_004343846.1	KEGG: bvu:BVU_1447 hypothetical protein; SPTR:  uncharacterized protein
YP_004343847.1	KEGG: dth:DICTH_0216 hypothetical protein; SPTR:  uncharacterized protein
YP_004343848.1	KEGG: ame:409243 similar to CG33957-PB, isoform B
YP_004343849.1	InterPro IPR003806; KEGG: ava:Ava_1618 hypothetical protein; PFAM: ATP-grasp fold, DUF201-type; SPTR:  uncharacterized protein; PFAM: RimK-like ATP-grasp domain
YP_004343850.1	KEGG: fjo:Fjoh_1361 hypothetical protein; SPTR:  uncharacterized protein
YP_004343851.1	KEGG: ara:Arad_4117 insertion sequence transposase
YP_004343852.1	KEGG: mmi:MMAR_1411 hypothetical protein; SPTR:  uncharacterized protein
YP_004343853.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: bfr:BF4294 two-component system response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343854.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: sli:Slin_1837 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR:  two-component system sensor protein histidine kinase; PFAM: Histidine kinase
YP_004343855.1	InterPro IPR003675; KEGG: fnu:FN0640 transporter; PFAM: Abortive infection protein; SPTR: Transporter; PFAM: CAAX amino terminal protease
YP_004343856.1	KEGG: bfs:BF2041 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1266)
YP_004343857.1	KEGG: ddi:DDB_G0286725 vacuolar protein sorting-associated protein 13 family protein; SPTR:  uncharacterized protein
YP_004343858.1	KEGG: sfr:Sfri_1348 hypothetical protein; SPTR:  uncharacterized protein
YP_004343859.1	KEGG: lbf:LBF_3284 hypothetical protein; SPTR:  uncharacterized protein
YP_004343860.1	KEGG: rcu:RCOM_1186860 serine-threonine protein kinase, plant-type, SPTR: 4Fe-4S ferredoxin, iron-sulfur binding
YP_004343861.1	KEGG: sse:Ssed_2559 hypothetical protein; SPTR:  uncharacterized protein
YP_004343862.1	KEGG: cyc:PCC7424_0969 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase)
YP_004343863.1	KEGG: mxa:MXAN_3814 hypothetical protein; SPTR: Short chain dehydrogenase
YP_004343864.1	COGs: COG0346 Lactoylglutathione lyase and related lyase; InterPro IPR004360; KEGG: chu:CHU_2533 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004343865.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509:IPR011912; KEGG: sli:Slin_3451 ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: ADP-glyceromanno-heptose 6-epimerase; SPTR: ADP-L-glycero-D-manno-heptose-6-epimerase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase
YP_004343866.1	KEGG: cdl:CDR20291_1661  lipoprotein; SPTR: Probable lipoprotein
YP_004343867.1	KEGG: sdl:Sdel_1559 TonB-dependent receptor plug; SPTR: TonB-dependent receptor plug
YP_004343868.1	KEGG: saf:SULAZ_1687 phosphate-selective porin O and P superfamily protein; SPTR:  listeria/Bacterioides repeat-containing domain protein
YP_004343869.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: chu:CHU_1390 6-pyruvoyltetrahydropterin synthase (6-pyruvoyl tetrahydrobiopterin) synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase-related; SPTR: 6-pyruvoyltetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004343870.1	COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR020602:IPR001474; KEGG: phe:Phep_4149 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_004343871.1	KEGG: fbc:FB2170_15678 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Transglutaminase-like domain
YP_004343872.1	KEGG: chu:CHU_0766 hypothetical protein; SPTR:  uncharacterized protein
YP_004343873.1	COGs: COG0670 Integral membrane protein interacts with FtsH; InterPro IPR006214; KEGG: pru:PRU_0181 hypothetical protein; PFAM: Bax inhibitor-1-related; SPTR:  membrane protein; PFAM: Uncharacterised protein family UPF0005
YP_004343874.1	COGs: COG2738 Zn-dependent protease; InterPro IPR007395; KEGG: cpi:Cpin_0879 peptidase membrane zinc metallopeptidase PFAM: Peptidase, membrane zinc metallopeptidase, SPTR:  uncharacterized protein; PFAM:  neutral zinc metallopeptidase
YP_004343876.1	InterPro IPR004993; KEGG: phe:Phep_3685 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter
YP_004343877.1	KEGG: fjo:Fjoh_1483 hypothetical protein; SPTR: Predicted transporter
YP_004343878.1	COGs: COG1428 Deoxynucleoside kinase; InterPro IPR002624; KEGG: fjo:Fjoh_1482 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase; PRIAM: Deoxyadenosine kinase; SPTR: Deoxynucleoside kinase; PFAM: Deoxynucleoside kinase
YP_004343879.1	KEGG: bth:BT_2069 hypothetical protein; SPTR:  uncharacterized protein
YP_004343880.1	KEGG: fsu:Fisuc_1060 hypothetical protein; SPTR: ATP synthase epsilon chain
YP_004343881.1	KEGG: vvi:100246526 hypothetical protein LOC100246526; SPTR:  uncharacterized protein
YP_004343882.1	KEGG: clo:HMPREF0868_0299 bacterial extracellular solute-binding protein; SPTR: Bacterial extracellular solute-binding protein
YP_004343883.1	KEGG: mru:mru_2123 hypothetical protein; SPTR: Trap transporter, dctm subunit
YP_004343884.1	KEGG: pgn:PGN_0900 thiol protease; SPTR:  uncharacterized protein
YP_004343885.1	KEGG: fjo:Fjoh_0072 hypothetical protein; SPTR:  uncharacterized protein
YP_004343886.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: dfe:Dfer_2806 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004343887.1	COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: fba:FIC_01696 phosphohistidine phosphatase SixA; PFAM: Histidine phosphatase superfamily, clade-1; SPTR: Phosphohistidine phosphatase SixA; manually curated; PFAM: Phosphoglycerate mutase
YP_004343888.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: gfo:GFO_2853 hypothetical protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004343889.1	KEGG: hha:Hhal_1886 aromatic hydrocarbon degradation membrane protein; SPTR:  uncharacterized protein
YP_004343890.1	KEGG: lbf:LBF_1451 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_004343892.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: ttu:TERTU_2036  beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Probable 6-aminohexanoate-dimer hydrolase; PFAM: Beta-lactamase
YP_004343893.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_1151 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family transcriptional regulator; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004343894.1	KEGG: fra:Francci3_2083 hypothetical protein; SPTR:  uncharacterized protein
YP_004343895.1	KEGG: pru:PRU_1907  lipoprotein; SPTR:  uncharacterized protein
YP_004343896.1	KEGG: cpi:Cpin_3506 hypothetical protein; SPTR:  uncharacterized protein
YP_004343897.1	KEGG: mba:Mbar_A2621 hypothetical protein; SPTR:  uncharacterized protein
YP_004343898.1	COGs: COG1521  transcriptional regulator protein; HAMAP: Type III pantothenate kinase; InterPro IPR004619; KEGG: bth:BT_4366 pantothenate kinase; PFAM: Bordetella pertussis Bvg accessory factor; SPTR: Type III pantothenate kinase; TIGRFAM: Bordetella pertussis Bvg accessory factor; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_004343899.1	KEGG: fbc:FB2170_08419  outer membrane protein; SPTR:  uncharacterized protein
YP_004343900.1	InterPro IPR010664; KEGG: chu:CHU_3270 hypothetical protein; PFAM: Lipopolysccharide-assembly, LptC-related; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1239)
YP_004343901.1	KEGG: phu:Phum_PHUM574310 hypothetical protein; SPTR: Conserved protein
YP_004343902.1	KEGG: phe:Phep_3629 hypothetical protein; SPTR:  uncharacterized protein
YP_004343903.1	COGs: COG0646 Methionine synthase I (cobalamin-dependent) methyltransferase domain; InterPro IPR003726; KEGG: nve:NEMVE_v1g156669 hypothetical protein; PFAM: Homocysteine S-methyltransferase; PRIAM: Methionine synthase; SPTR: Predicted protein; PFAM: Homocysteine S-methyltransferase
YP_004343904.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterProIPR000489:IPR003759:IPR006158:IPR004223:IPR 011822; KEGG: chu:CHU_1434 methionine synthase (B12-dependent); PFAM: Dihydropteroate synthase, DHPS; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Vitamin B12-dependent methionine synthase, activation domain; PRIAM: Methionine synthase; SPTR: Methionine synthase (B12-dependent); TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_004343905.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: cpi:Cpin_6899 conserved repeat domain protein; PFAM: PKD; SMART: PKD; SPTR: Conserved repeat domain protein; PFAM: PKD domain
YP_004343906.1	COGs: COG0328 Ribonuclease HI; InterPro IPR002156; KEGG: phe:Phep_2969 ribonuclease H; PFAM: Ribonuclease H; PRIAM: Ribonuclease H; SPTR: Ribonuclease H; PFAM: RNase H
YP_004343907.1	KEGG: pfo:Pfl01_4311 hypothetical protein; SPTR: CTP synthase
YP_004343908.1	KEGG: ami:Amir_4195 peptidase S8/S53 subtilisin kexin sedolisin; SPTR: Hemagglutinin/hemolysin-related protein
YP_004343909.1	KEGG: dre:792539 Ras association (RalGDS/AF-6) domain family member 5-like; SPTR: Interferon-induced guanylate-binding protein
YP_004343910.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: fjo:Fjoh_0688 peptidase M24; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Peptidase subfamily M24B; PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase M24
YP_004343911.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fba:FIC_02135 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold
YP_004343912.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: phe:Phep_1585 LytTr DNA-binding region; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004343913.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR011123:IPR010559:IPR003594; KEGG: fps:FP1516 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; ATPase-like, ATP-binding domain; SPTR: Histidine kinase DhkJ; PFAM: Histidine kinase; Y_Y_Y domain; Two component regulator propeller; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004343914.1	KEGG: pfs:pQBR0134  autotransporter; SPTR:  autotransporter
YP_004343915.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728:IPR006283; KEGG: gfo:GFO_3137 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_004343916.1	KEGG: cbi:CLJ_B1728 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase sigma factor, sigma-70 family
YP_004343917.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: scl:sce0774 quinoprotein glucose dehydrogenase; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: L-sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase; TIGRFAM: dehydrogenase, PQQ-dependent, s-GDH family
YP_004343918.1	KEGG: tmt:Tmath_0485 ABC-2 type transporter; SPTR:  two-component system sensor protein histidine kinase
YP_004343919.1	KEGG: fbc:FB2170_15483 hypothetical protein; SPTR: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase subfamily protein
YP_004343920.1	COGs: COG0251  translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: vei:Veis_1528 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP
YP_004343921.1	InterPro IPR002104; KEGG: sli:Slin_5872 integrase; PFAM: Integrase, catalytic core, phage; SPTR:  uncharacterized protein; PFAM: Phage integrase
YP_004343922.1	KEGG: apo:Arcpr_1694 YcfA family protein; SPTR:  uncharacterized protein
YP_004343923.1	KEGG: tva:TVAG_043600 hypothetical protein; SPTR: NmrA-like family protein
YP_004343924.1	InterPro IPR001387; KEGG: chu:CHU_0046 regulatory protein; transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Regulatory protein; possible transcriptional regulator; PFAM: Helix-turn-helix
YP_004343925.1	KEGG: jde:Jden_0397 hypothetical protein; SPTR:  uncharacterized protein
YP_004343926.1	KEGG: abu:Abu_0796 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2971)
YP_004343927.1	KEGG: geo:Geob_1221 ATPase; SPTR: ATPase; PFAM: Archaeal ATPase
YP_004343928.1	KEGG: pfh:PFHG_00606 hypothetical protein similar to DNA polymerase I; SPTR:  uncharacterized protein
YP_004343929.1	KEGG: phe:Phep_0581 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2723)
YP_004343930.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: phe:Phep_0661 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR:  polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004343931.1	InterPro IPR018914; KEGG: cpi:Cpin_0740 hypothetical protein; PFAM: Protein of unknown function DUF2480; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2480)
YP_004343932.1	KEGG: hth:HTH_1702 cation transporting ATPase; SPTR: Heavy metal transport/detoxification protein; PFAM: Heavy-metal-associated domain
YP_004343933.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cat:CA2559_04345 alpha/beta superfamily hydrolase; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold
YP_004343934.1	KEGG: cch:Cag_1529 hypothetical protein; SPTR:  uncharacterized protein
YP_004343935.1	KEGG: sli:Slin_6188 TonB family protein; SPTR: TonB family protein
YP_004343936.1	InterPro IPR006260; KEGG: dfe:Dfer_3381 TonB family protein; PFAM: TonB, C-terminal; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004343938.1	KEGG: bth:BT_3896 TonB; SPTR: TonB; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004343939.1	InterPro IPR006260; KEGG: bfs:BF3767 hypothetical protein; PFAM: TonB, C-terminal; SPTR: Conserved hypothetical membrane protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004343940.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590:IPR002539:IPR011966; KEGG: cat:CA2559_05275 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; MaoC-like dehydratase; PRIAM: Aldehyde dehydrogenase (NAD(+)); SPTR: Phenylacetic acid degradation protein paaN; TIGRFAM: Phenylacetic acid degradation protein paaN; PFAM: MaoC like domain; Aldehyde dehydrogenase; TIGRFAM: phenylacetic acid degradation protein paaN
YP_004343941.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: sli:Slin_5087 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1
YP_004343942.1	InterPro IPR003400; KEGG: cpi:Cpin_1427 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_004343943.1	InterPro IPR003400; KEGG: bfs:BF3945 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR:  uncharacterized protein; PFAM: Biopolymer transport protein ExbD/TolR
YP_004343944.1	InterPro IPR006260; KEGG: dfe:Dfer_4058 TonB family protein; PFAM: TonB, C-terminal; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004343945.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; KEGG: sli:Slin_5092 ABC-type phosphate transport system periplasmic component-like protein; SPTR: ABC-type phosphate transport system periplasmic component-like protein
YP_004343946.1	InterPro IPR001440:IPR019734; KEGG: dfe:Dfer_4061 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004343947.1	KEGG: chu:CHU_2789 hypothetical protein; SPTR:  uncharacterized protein
YP_004343948.1	KEGG: cpi:Cpin_1429 TonB family protein; SPTR:  uncharacterized protein; PFAM: Gram-negative bacterial tonB protein
YP_004343949.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; HAMAP: ATPase, F1 complex, beta subunit; InterProIPR004100:IPR000194:IPR000793:IPR005722:IPR 003593; KEGG: fbc:FB2170_07404 ATP synthase subunit B; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: H(+)-transporting two-sector ATPase, beta subunit; TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_004343950.1	COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546; KEGG: zpr:ZPR_4514 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; SPTR: ATP synthase subunit epsilon; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain
YP_004343951.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; HAMAP:Di-trans-poly-cis-decaprenylcistransferase-li ke; InterPro IPR001441; KEGG: phe:Phep_0985 undecaprenyl diphosphate synthase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl diphosphate synthase; TIGRFAM:Di-trans-poly-cis-decaprenylcistransferase- like; PFAM:  undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_004343952.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: phe:Phep_0986 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_004343953.1	InterPro IPR005632; KEGG: cpi:Cpin_1053 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); manually curated; PFAM: Outer membrane protein (OmpH-like)
YP_004343954.1	InterPro IPR005632; KEGG: zpr:ZPR_0616 OmpH family outer membrane protein; PFAM: Outer membrane chaperone Skp (OmpH); SPTR: OmpH family outer membrane protein; PFAM: Outer membrane protein (OmpH-like); Carbohydrate kinase
YP_004343955.1	COGs: COG3384 conserved hypothetical protein; InterPro IPR004183; KEGG: cpi:Cpin_4445 extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; SPTR: Extradiol ring-cleavage dioxygenase class III protein subunit B; PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase
YP_004343956.1	COGs: COG0796 Glutamate racemase; HAMAP: Glutamate racemase; InterPro IPR015942:IPR004391; KEGG: sli:Slin_2377 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: Glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase
YP_004343957.1	InterPro IPR002781; KEGG: cat:CA2559_12623 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR: Membrane protein, ; PFAM: Sulfite exporter TauE/SafE
YP_004343958.1	KEGG: fjo:Fjoh_0576 hypothetical protein; SPTR:  uncharacterized protein
YP_004343959.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: cpi:Cpin_0796 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein, ; PFAM: Radical SAM superfamily
YP_004343960.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839:IPR011282; KEGG: cpi:Cpin_0908 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase, class I/II; PRIAM: Glycine C-acetyltransferase; SPTR: Glycine C-acetyltransferase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase
YP_004343961.1	KEGG: gau:GAU_3688 hypothetical protein; SPTR:  uncharacterized protein
YP_004343962.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: rbi:RB2501_08720 glycosyltransferase; PFAM: Glycosyl transferase, family 2; PRIAM: Glucomannan 4-beta-mannosyltransferase; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase 2
YP_004343963.1	KEGG: bab:bbp427 heat shock protein 90; SPTR:  uncharacterized protein ycf1
YP_004343964.1	COGs: COG0782 Transcription elongation factor; InterPro IPR001437; KEGG: gfo:GFO_0725 transcription elongation factor; PFAM: Transcription elongation factor, GreA/GreB domain, prokaryotic; SPTR:  uncharacterized protein; PFAM: Transcription elongation factor, GreA/GreB, C-term
YP_004343965.1	COGs: COG1282 NAD/NADP transhydrogenase beta subunit; InterPro IPR004003; KEGG: cpi:Cpin_6489 NAD(P)(+) transhydrogenase (AB-specific); PFAM: NAD(P) transhydrogenase, beta subunit; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase subunit beta; PFAM: NAD(P) transhydrogenase beta subunit
YP_004343966.1	COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; KEGG: cpi:Cpin_6490 pyridine nucleotide transhydrogenase subunit alpha; SPTR: Pyridine nucleotide transhydrogenase subunit alpha
YP_004343967.1	COGs: COG3288 NAD/NADP transhydrogenase alpha subunit; InterPro IPR007886:IPR007698; KEGG: lbf:LBF_3121 NAD(P)(+) transhydrogenase subunit alpha; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: NAD(P)(+) transhydrogenase (AB-specific); SPTR: NAD(P) transhydrogenase subunit alpha part 1; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit
YP_004343968.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: rbi:RB2501_10817 glutamate dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; PRIAM: Glutamate dehydrogenase (NAD(P)(+)); SPTR: Glutamate dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004343969.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR002197:IPR003593; KEGG: gfo:GFO_0728 two-component response transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Two-component system response regulator containing sigma-54 interaction domain; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004343970.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: zpr:ZPR_2210 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004343971.1	KEGG: hba:Hbal_2937 lytic murein transglycosylase; SPTR: Calcineurin-like phosphoesterase
YP_004343972.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: fps:FP0220 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_004343973.1	KEGG: cdu:CD36_71230 hypothetical protein; SPTR: RNA-dependent RNA polymerase
YP_004343974.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547; KEGG: rbi:RB2501_07590 sulfate transporter; PFAM: Sulphate transporter; SPTR: Sulfate transporter; PFAM: Sulfate transporter family
YP_004343975.1	COGs: COG0288 Carbonic anhydrase; InterPro IPR001765; KEGG: fps:FP2029 carbonic anhydrase; PFAM: Carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; PFAM: Carbonic anhydrase
YP_004343976.1	COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: fbc:FB2170_07649 hypothetical protein; PFAM: DNA alkylation repair enzyme; SPTR:  uncharacterized protein; PFAM: DNA alkylation repair enzyme
YP_004343977.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: chu:CHU_2649 RNA polymerase, sigma-E factor; heat shock and oxidative stress; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-E factor; heat shock and oxidative stress; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004343979.1	KEGG: rmr:Rmar_2818 hypothetical protein; SPTR:  uncharacterized protein
YP_004343980.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: phe:Phep_1583 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M20/M25/M40 family protein; PFAM: Peptidase M28
YP_004343981.1	KEGG: cyc:PCC7424_0684 hypothetical protein; SPTR:  uncharacterized protein
YP_004343982.1	COGs: COG1435 Thymidine kinase; HAMAP: Thymidine kinase, subgroup; InterPro IPR001267:IPR020634; KEGG: bth:BT_2275 thymidine kinase; PFAM: Thymidine kinase; PRIAM: Thymidine kinase; SPTR: Thymidine kinase; PFAM: Thymidine kinase
YP_004343983.1	COGs: COG0787 Alanine racemase; HAMAP: Alanine racemase; InterProIPR000713:IPR013221:IPR001608:IPR011079:IPR 000821; KEGG: pdi:BDI_3384  bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; PFAM: Alanine racemase, N-terminal; Mur ligase, central; Mur ligase, N-terminal; Alanine racemase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase., Alanine racemase; SPTR: Mur ligase domain protein/alanine racemase; TIGRFAM: Alanine racemase; PFAM: Alanine racemase, C-terminal domain; Mur ligase, catalytic domain; Mur ligase, glutamate ligase domain; Alanine racemase, N-terminal domain; Mur ligase middle domain; TIGRFAM: alanine racemase
YP_004343984.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: hoh:Hoch_1452 cysteine-rich repeat protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Peptidoglycan-associated lipoprotein; PFAM: OmpA family
YP_004343985.1	COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: chu:CHU_3799 transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: ADA regulatory protein; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_004343986.1	COGs: COG2268 conserved hypothetical protein; InterPro IPR001107; KEGG: fps:FP0707 hypothetical protein; PFAM: Band 7 protein; SPTR:  uncharacterized protein; PFAM: SPFH domain / Band 7 family
YP_004343987.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: sli:Slin_0994 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004343988.1	KEGG: ncr:NCU03932 hypothetical protein; SPTR: Whole genome shotgun sequence assembly, scaffold_68
YP_004343989.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; HAMAP: ATP synthase gamma chain; InterPro IPR000131; KEGG: zpr:ZPR_0066 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_004343990.1	InterPro IPR012657; KEGG: gem:GM21_0322 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02436; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004343991.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; InterPro IPR004100:IPR000194:IPR000793:IPR005294; KEGG: fjo:Fjoh_1059 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; SPTR: ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_004343992.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); HAMAP: ATPase, F1 complex, OSCP/delta subunit; InterPro IPR000711; KEGG: dfe:Dfer_5022 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_004343993.1	COGs: COG0711 F0F1-type ATP synthase subunit b; HAMAP: ATP synthase subunit b; InterPro IPR002146:IPR005864; KEGG: gfo:GFO_3268 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; SPTR: ATP synthase subunit b; TIGRFAM: ATPase, F0 complex, subunit B, bacterial; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_004343994.1	HAMAP: ATPase, F0 complex, subunit C; InterPro IPR002379:IPR000454:IPR005953; KEGG: gfo:GFO_3269 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C; SPTR: ATP synthase subunit c; TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_004343995.1	COGs: COG0356 F0F1-type ATP synthase subunit a; HAMAP: ATP synthase subunit a; InterPro IPR000568; KEGG: gfo:GFO_3270 ATP synthase subunit A; PFAM: ATPase, F0 complex, subunit A; SPTR: ATP synthase subunit a; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_004343996.1	KEGG: lmy:LM5923_2511 hypothetical protein; SPTR:  uncharacterized protein
YP_004343997.1	KEGG: coc:Coch_1401 membrane protein; SPTR: Membrane protein
YP_004343998.1	InterPro IPR019734; KEGG: pdi:BDI_3149 TPR domain-containing protein; SPTR:  uncharacterized protein
YP_004343999.1	COGs: COG1286 membrane protein required for colicin V production; InterPro IPR003825; KEGG: gfo:GFO_3421 colicin V production protein; PFAM: Colicin V production protein; SPTR:  uncharacterized protein; PFAM: Colicin V production protein
YP_004344000.1	COGs: COG0217 conserved hypothetical protein; HAMAP: Protein of unknown function DUF28; InterPro IPR002876; KEGG: wsu:WS1016 hypothetical protein; PFAM: Protein of unknown function DUF28; SPTR: UPF0082 protein WS1016; TIGRFAM: Protein of unknown function DUF28; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_004344001.1	KEGG: pfh:PFHG_02708 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004344002.1	KEGG: fbc:FB2170_06860 hypothetical protein; SPTR:  uncharacterized protein
YP_004344003.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478; KEGG: zpr:ZPR_0249 family M50 transmembrane peptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; SPTR: Family M50 transmembrane peptidase; PFAM: Peptidase M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_004344004.1	KEGG: phe:Phep_2547 hypothetical protein; SPTR:  uncharacterized protein
YP_004344005.1	KEGG: dfe:Dfer_2684 PKD domain containing protein; SPTR: PKD domain containing protein
YP_004344006.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: cat:CA2559_05875 peptidase S8 and S53, subtilisin, kexin, sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53, subtilisin, kexin, sedolisin; manually curated; PFAM: Subtilase
YP_004344007.1	KEGG: tgo:TGME49_088960 ATP-binding surface antigen, SPTR: LOC100000079 protein
YP_004344008.1	COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR013542:IPR004453; KEGG: fps:FP2124  4Fe-4S binding protein; PFAM: Domain of unknown function DUF1730; SPTR:  iron-sulfur cluster-binding protein; TIGRFAM: 4Fe-4S cluster binding; PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein
YP_004344009.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; HAMAP: DNA helicase, Holliday junction RuvB type; InterProIPR008824:IPR003959:IPR008823:IPR004605:IPR 003593; KEGG: pru:PRU_2468 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: DNA helicase, Holliday junction RuvB type; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_004344010.1	COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883; KEGG: fps:FP0379 cytochrome c oxidase, subunit I precursor; PFAM: Cytochrome c oxidase, subunit I; SPTR: Probable cytochrome c oxidase, subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I
YP_004344011.1	COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR011759:IPR002429; KEGG: fbc:FB2170_03060 probable alternative cytochrome c oxidase polypeptide II transmembrane protein; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain; SPTR: Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain
YP_004344012.1	KEGG: rbi:RB2501_03695 hypothetical protein; SPTR:  uncharacterized protein
YP_004344013.1	KEGG: dfe:Dfer_3473 cytochrome c family protein; SPTR: Cytochrome c family protein; PFAM: Cytochrome c
YP_004344014.1	KEGG: fjo:Fjoh_1637 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3341)
YP_004344015.1	COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: cat:CA2559_01305 molybdopterin oxidoredutase membrane subunit; PFAM: Polysulphide reductase, NrfD; SPTR: Molybdopterin oxidoredutase membrane subunit; PFAM: Polysulphide reductase, NrfD
YP_004344016.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311; KEGG: chu:CHU_2212 molybdopterin oxidoreductase, iron-sulfur binding subunit; SPTR: Molybdopterin oxidoreductase, iron-sulfur binding subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004344017.1	InterPro IPR003088; KEGG: zpr:ZPR_0577 cytochrome c domain-containing protein; PFAM: Cytochrome c, class I; SPTR: Cytochrome c domain-containing protein; PFAM: Class III cytochrome C family; Cytochrome c
YP_004344018.1	KEGG: phe:Phep_0272 sporulation domain protein; SPTR: Sporulation domain protein
YP_004344019.1	COGs: COG2081 flavoprotein; InterPro IPR004792; KEGG: chu:CHU_0628 flavoprotein; PFAM: HI0933-like protein; SPTR: Flavoprotein; TIGRFAM: HI0933-like protein; manually curated; PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family; uncharacterized flavoprotein, PP_4765 family
YP_004344020.1	COGs: COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase); HAMAP: Phosphoribosylglycinamide formyltransferase 2; InterPro IPR003135:IPR005862; KEGG: fjo:Fjoh_1742 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylglycinamide formyltransferase 2; TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylglycinamide formyltransferase 2
YP_004344021.1	InterPro IPR018966; KEGG: fbc:FB2170_11466 hypothetical protein; PFAM: VTC domain; SPTR:  uncharacterized protein; PFAM: VTC domain
YP_004344022.1	KEGG: fbc:FB2170_11471 hypothetical protein; SPTR:  uncharacterized protein
YP_004344023.1	KEGG: pth:PTH_1594 transposase; SPTR: Predicted protein
YP_004344024.1	KEGG: pmz:HMPREF0659_A5804 hypothetical protein; SPTR:  uncharacterized protein
YP_004344025.1	KEGG: cpi:Cpin_1971 AsmA family protein; SPTR: AsmA family protein
YP_004344026.1	COGs: COG3016 Uncharacterized iron-regulated protein; InterPro IPR007314; KEGG: cli:Clim_1026 protein of unknown function DUF399; PFAM: Protein of unknown function DUF399; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF399
YP_004344027.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: pgi:PG1564 hypothetical protein; PFAM: Sulfatase; SPTR:  sulfatase; PFAM: Sulfatase
YP_004344028.1	COGs: COG1597 Sphingosine kinase; InterPro IPR001206; KEGG: pmz:HMPREF0659_A5596 lipid kinase, YegS/Rv2252/BmrU family; PFAM: Diacylglycerol kinase, catalytic domain; SMART: Diacylglycerol kinase, catalytic domain; SPTR: Diacylglycerol kinase catalytic domain-containing protein; PFAM: Diacylglycerol kinase catalytic domain
YP_004344029.1	KEGG: cat:CA2559_05275 aldehyde dehydrogenase; SPTR: Phenylacetic acid degradation protein paaN; PFAM: Protein of unknown function (DUF1569)
YP_004344030.1	KEGG: tva:TVAG_399490 hypothetical protein; SPTR: Streptococcal surface protein
YP_004344031.1	KEGG: cpi:Cpin_1193 protein of unknown function DUF540; SPTR: Predicted protein; PFAM: Protein of unknown function (DUF540)
YP_004344032.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099; KEGG: pdi:BDI_2303 methylmalonyl-CoA mutase, small subunit; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; PRIAM: Methylmalonyl-CoA mutase; SPTR:  uncharacterized protein; PFAM: Methylmalonyl-CoA mutase
YP_004344033.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006099:IPR006158:IPR006098:IPR006159; KEGG: lil:LB274 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_004344034.1	KEGG: pbe:PB403541.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344035.1	InterPro IPR007060; KEGG: fbc:FB2170_09641 uridine kinase; PFAM: Septum formation initiator; SPTR: Uridine kinase; manually curated; PFAM: Septum formation initiator
YP_004344036.1	COGs: COG2385 Sporulation protein and related protein; InterPro IPR013693:IPR013486; KEGG: dth:DICTH_1498 cytoplasmic membrane protein; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal; SPTR: Cytoplasmic membrane protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Stage II sporulation protein; TIGRFAM: SpoIID/LytB domain
YP_004344037.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: fjo:Fjoh_1427 lipid-A-disaccharide synthase; PFAM: Glycosyl transferase, family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Candidate lipid-A-disaccharide synthase; Glycosyltransferase 19; TIGRFAM: Glycosyl transferase, family 19; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_004344038.1	KEGG: bth:BT_3642 Na+-dependent transporter; SPTR: Membrane protein
YP_004344039.1	COGs: COG0496 acid phosphatase; HAMAP: Survival protein SurE-like phosphatase/nucleotidase; InterPro IPR002828; KEGG: zpr:ZPR_0655 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; SPTR: Acid phosphatase, survival protein; TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_004344040.1	KEGG: bpf:BpOF4_12480 hypothetical protein; SPTR:  uncharacterized protein
YP_004344041.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR020046:IPR020047:IPR002562:IPR001098:IPR 002421:IPR008918:IPR018320; KEGG: cpi:Cpin_0712 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; PRIAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; SPTR: DNA-directed DNA polymerase I; TIGRFAM: DNA polymerase 1; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase A; TIGRFAM: DNA polymerase I
YP_004344042.1	InterPro IPR001842:IPR003137; KEGG: cat:CA2559_04140 metalloprotease, PFAM: Peptidase M36, fungalysin; Protease-associated PA; SPTR: Protease-associated PA; PFAM: PA domain; Fungalysin metallopeptidase (M36)
YP_004344043.1	COGs: COG3540 Phosphodiesterase/alkaline phosphatase D; KEGG: cat:CA2559_05495 hypothetical protein; PRIAM: Alkaline phosphatase; SPTR:  uncharacterized protein; PFAM: PhoD-like phosphatase
YP_004344044.1	KEGG: mmi:MMAR_5344 PE-PGRS family protein; SPTR: PE-PGRS family protein
YP_004344045.1	InterPro IPR004843; KEGG: sse:Ssed_1747 hypothetical protein; PFAM: Metallophosphoesterase; SPTR:  uncharacterized protein; PFAM: Calcineurin-like phosphoesterase
YP_004344046.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: tnp:Tnap_0408 AAA ATPase; SPTR: DNA /RNA helicase, superfamily I
YP_004344047.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: phe:Phep_2908 cystathionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-lyase; SPTR: Cys/Met metabolism PLP-dependent enzyme; PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_004344048.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: bay:RBAM_028900 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: YueD; PFAM: short chain dehydrogenase
YP_004344049.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: dfe:Dfer_0319 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR: Collagenase, ; PFAM: Pregnancy-associated plasma protein-A; PKD domain
YP_004344050.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: dfe:Dfer_0319 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR: Collagenase, ; PFAM: Pregnancy-associated plasma protein-A; PKD domain
YP_004344051.1	KEGG: cbk:CLL_A0446  lipoprotein; SPTR:  lipoprotein
YP_004344052.1	InterPro IPR019288; KEGG: cat:CA2559_03580 polysaccharide biosynthesis protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Polysaccharide biosynthesis protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
YP_004344053.1	COGs: COG1956 GAF domain-containing protein; KEGG: bth:BT_1810 GAF domain-containing protein; SPTR: GAF domain protein
YP_004344054.1	KEGG: fjo:Fjoh_0663 hypothetical protein; SPTR:  uncharacterized protein
YP_004344055.1	InterPro IPR005242; KEGG: bfs:BF3234 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein
YP_004344056.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000836:IPR005946; KEGG: cat:CA2559_04015 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004344057.1	COGs: COG1825 Ribosomal protein L25 (general stress protein Ctc); HAMAP: Ribosomal protein L25; InterPro IPR001021:IPR020055; KEGG: fba:FIC_02547 50S ribosomal protein L25/general stress protein Ctc; PFAM: Ribosomal protein L25, N-terminal; SPTR: 50S ribosomal protein L25; TIGRFAM: Ribosomal protein L25; PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_004344058.1	COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502:IPR000859; KEGG: kfl:Kfla_4772 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; CUB; PRIAM: N-acetylmuramoyl-L-alanine amidase; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; CUB; SPTR: N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase; CUB domain
YP_004344059.1	KEGG: fjo:Fjoh_1731 hypothetical protein; SPTR:  uncharacterized protein
YP_004344060.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: fjo:Fjoh_1732 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR:  transcriptional regulator; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004344061.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128:IPR006109; KEGG: phe:Phep_0664 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; PRIAM: Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_004344062.1	COGs: COG0251  translation initiation inhibitor yjgF family; InterPro IPR006175; KEGG: kko:Kkor_0381 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: 2-aminomuconate deaminase; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP
YP_004344063.1	KEGG: fba:FIC_02182 hypothetical protein; SPTR:  uncharacterized protein
YP_004344064.1	COGs: COG1092 SAM-dependent methyltransferase; KEGG: phe:Phep_3463 SAM dependent methyltransferase; SPTR: SAM dependent methyltransferase; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_004344065.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_5476 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004344066.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: dfe:Dfer_2962 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004344067.1	KEGG: pcb:PC000036.02.0 stearoyl-CoA desaturase (acyl-CoA desaturase, faty acid desaturase); SPTR:  uncharacterized protein
YP_004344068.1	KEGG: fba:FIC_00902 hypothetical protein; SPTR:  uncharacterized protein
YP_004344069.1	KEGG: tau:Tola_0800 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3606)
YP_004344070.1	COGs: COG1032 Fe-S oxidoreductase; HAMAP: UPF0313 protein ygiQ; InterPro IPR013704:IPR006638; KEGG: sli:Slin_1403 radical SAM domain protein; PFAM: Radical SAM N-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; Radical SAM N-terminal
YP_004344071.1	KEGG: pfh:PFHG_01649 conserved hypothetical protein; SPTR: OppA2
YP_004344072.1	InterPro IPR011652; KEGG: chu:CHU_2455 glucosyltransferase-S; PFAM: MORN variant; SPTR:  uncharacterized protein; PFAM: MORN repeat variant
YP_004344073.1	KEGG: psl:Psta_4567 hypothetical protein; SPTR:  uncharacterized protein
YP_004344074.1	KEGG: rrs:RoseRS_2786 hypothetical protein; SPTR:  uncharacterized protein
YP_004344075.1	KEGG: cat:CA2559_03115 hypothetical protein; SPTR:  uncharacterized protein
YP_004344076.1	KEGG: phe:Phep_1595 hypothetical protein; SPTR:  uncharacterized protein
YP_004344077.1	KEGG: ddi:DDB_G0291704 hypothetical protein; SPTR:  uncharacterized protein
YP_004344078.1	KEGG: ccb:Clocel_3608 hypothetical protein; SPTR:  RHS repeat-associated core domain protein
YP_004344079.1	COGs: COG0260 Leucyl aminopeptidase; InterPro IPR000819; KEGG: rmr:Rmar_1710 leucyl aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; SPTR: Cytosol aminopeptidase; PFAM: Cytosol aminopeptidase, catalytic domain
YP_004344080.1	COGs: COG1995 Pyridoxal phosphate biosynthesis protein; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; InterPro IPR005255; KEGG: chu:CHU_1627 pyridoxal phosphate biosynthesis protein; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_004344081.1	InterPro IPR003772; KEGG: fjo:Fjoh_0648 hypothetical protein; PFAM: Protein of unknown function DUF177; SPTR:  uncharacterized protein; PFAM: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); Uncharacterized ACR, COG1399
YP_004344082.1	HAMAP: Ribosomal protein L32p; InterPro IPR002677; KEGG: fps:FP2380 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; SPTR: 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_004344083.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; HAMAP: Phospholipid biosynthesis protein, PlsX like; InterPro IPR012281:IPR003664; KEGG: chu:CHU_1625 phosphate:acyl-[acyl carrier protein] acyltransferase; PFAM: Fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: Phospholipid biosynthesis protein, PlsX like; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_004344084.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); InterPro IPR004655:IPR013751:IPR013747; KEGG: phe:Phep_3817 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004344085.1	COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR000089:IPR001249; KEGG: gfo:GFO_3344 biotin carboxyl carrier protein of acetyl-CoA carboxylase; PFAM: Biotin/lipoyl attachment; SPTR: Biotin carboxyl carrier protein of acetyl-CoA carboxylase; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_004344086.1	COGs: COG0439 Biotin carboxylase; InterPro IPR005481:IPR005479:IPR005482:IPR004549; KEGG: phe:Phep_3819 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; PRIAM: Biotin carboxylase; SPTR: Acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004344087.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: glo:Glov_2114 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: HAMP linker domain; Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE)
YP_004344088.1	InterPro IPR006260; KEGG: bth:BT_3898 TonB; SPTR:  uncharacterized protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004344089.1	KEGG: bth:BT_3673 TonB; SPTR: TonB; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004344090.1	KEGG: pgn:PGN_0809  TonB protein; SPTR:  uncharacterized protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004344091.1	KEGG: mbr:MONBRDRAFT_31371 hypothetical protein; SPTR: Predicted protein
YP_004344092.1	KEGG: ant:Arnit_1353 binding-protein-dependent transporter inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component
YP_004344093.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cpi:Cpin_0909 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344094.1	KEGG: cpi:Cpin_0910 hypothetical protein; SPTR:  uncharacterized protein
YP_004344095.1	COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: chu:CHU_2133 hypothetical protein; PFAM: Protein of unknown function DUF95, transmembrane; SPTR:  uncharacterized protein; PFAM: Integral membrane protein DUF95
YP_004344096.1	KEGG: chu:CHU_2134 hypothetical protein; SPTR:  uncharacterized protein
YP_004344097.1	KEGG: fjo:Fjoh_2230 hypothetical protein; SPTR:  uncharacterized protein
YP_004344098.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: chu:CHU_2136 MoxR-like ATPase, regulator; PFAM: ATPase, AAA-3; SPTR: MoxR-like ATPase, possible regulator; PFAM: ATPase associated with various cellular activities (AAA)
YP_004344099.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: sli:Slin_4966 protein of unknown function DUF58; PFAM: Protein of unknown function DUF58; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004344100.1	KEGG: bta:524144 potassium channel, subfamily U, member 1; SPTR:  uncharacterized protein
YP_004344101.1	KEGG: nam:NAMH_1449 hypothetical protein
YP_004344102.1	COGs: COG4405 conserved hypothetical protein; InterPro IPR007374; KEGG: fbc:FB2170_04955 hypothetical protein; PFAM: ASCH domain; SPTR:  uncharacterized protein; PFAM: ASCH domain
YP_004344103.1	KEGG: str:Sterm_3389 hypothetical protein; SPTR:  uncharacterized protein
YP_004344104.1	KEGG: mth:MTH841 hypothetical protein; SPTR: NADH dehydrogenase subunit 5
YP_004344105.1	KEGG: dan:Dana_GF22441 GF22441 gene product from transcript GF22441-RA; SPTR: GF22441
YP_004344106.1	KEGG: fba:FIC_01005 hypothetical protein; SPTR:  uncharacterized protein
YP_004344107.1	KEGG: lpa:lpa_02063 major facilitator family transporte; SPTR: Major facilitator family transporte
YP_004344108.1	KEGG: rfr:Rfer_1853 hypothetical protein; SPTR:  uncharacterized protein
YP_004344109.1	KEGG: hmg:100197291 similar to CG10911 CG10911-PA; SPTR: Uncharacterized protein R704
YP_004344110.1	KEGG: pfh:PFHG_02038 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004344112.1	KEGG: ddf:DEFDS_1279 hypothetical protein; SPTR:  uncharacterized protein
YP_004344113.1	COGs: COG4815 conserved hypothetical protein; InterPro IPR011235; KEGG: fjo:Fjoh_0073 hypothetical protein; PFAM: Uncharacterised conserved protein UCP032285; SPTR:  uncharacterized protein; PFAM: MepB protein
YP_004344114.1	KEGG: sde:Sde_1836 hypothetical protein; SPTR:  uncharacterized protein
YP_004344115.1	KEGG: amc:MADE_01340 phage shock protein A (IM30), suppresses sigma54-dependent transcription; SPTR: Phage shock protein A (IM30), suppresses sigma54-dependent transcription
YP_004344116.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: cat:CA2559_02440 probable piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: L-aminoadipate-semialdehyde dehydrogenase; SPTR: Probable piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase
YP_004344117.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR001440:IPR010822:IPR019734:IPR006597:IPR 001932; KEGG: ter:Tery_2811 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; Sporulation stage II, protein E C-terminal; SMART: Tetratricopeptide repeat; Sel1-like; Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases, ; PFAM: Tetratricopeptide repeat; Stage II sporulation protein E (SpoIIE)
YP_004344118.1	KEGG: dvi:Dvir_GJ13883 GJ13883 gene product from transcript GJ13883-RA; SPTR:  uncharacterized protein
YP_004344119.1	COGs: COG4895 conserved hypothetical protein; InterPro IPR019240; KEGG: aco:Amico_0321 protein of unknown function DUF2196; PFAM: Protein of unknown function DUF2196; SPTR:  uncharacterized protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Uncharacterized conserved protein (DUF2196); TIGRFAM: conserved hypothetical protein
YP_004344120.1	KEGG: cpi:Cpin_2083 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004344121.1	KEGG: sun:SUN_0817 hypothetical protein; SPTR:  uncharacterized protein
YP_004344122.1	KEGG: dde:Dde_0978 phosphodiesterase; SPTR: ATP-grasp domain protein
YP_004344123.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004344124.1	InterPro IPR007921; KEGG: pay:PAU_02437 trypanothione synthetase domain protein precursor; PFAM: Cysteine, histidine-dependent amidohydrolase/peptidase; SPTR: Trypanothione synthetase domain protein; PFAM: CHAP domain
YP_004344125.1	KEGG: str:Sterm_3838 hypothetical protein; SPTR: Maf-like protein MED152_01820
YP_004344126.1	InterPro IPR000531; KEGG: sli:Slin_0150 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; SPTR:  uncharacterized protein
YP_004344127.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: chu:CHU_3498 oligopeptide ABC transporter, solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Oligopeptide ABC transporter, solute-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_004344128.1	KEGG: chu:CHU_1739 hypothetical protein; SPTR:  uncharacterized protein
YP_004344129.1	InterPro IPR004360:IPR017515; KEGG: cat:CA2559_03285 lactoylglutathione lyase and related lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Lactoylglutathione lyase and related lyase; TIGRFAM: Methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_004344130.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834:IPR006402:IPR006439; KEGG: cpi:Cpin_0647 HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004344131.1	KEGG: ptm:GSPATT00034498001 hypothetical protein; SPTR:  uncharacterized protein
YP_004344132.1	COGs: COG0567 2-oxoglutarate dehydrogenase complex dehydrogenase (E1); InterPro IPR001017:IPR005475:IPR011603; KEGG: phe:Phep_3716 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; PRIAM: Oxoglutarate dehydrogenase (succinyl-transferring); SPTR: 2-oxoglutarate dehydrogenase, E1 subunit; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component
YP_004344133.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078:IPR006255; KEGG: fba:FIC_00781 dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue succinyltransferase; SPTR: Dihydrolipoyllysine-residue succinyltransferase; TIGRFAM: Dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
YP_004344134.1	KEGG: zpr:ZPR_3895 protein containing bacterial Ig-like domain; SPTR: Protein containing bacterial Ig-like domain
YP_004344135.1	KEGG: sli:Slin_6007 endonuclease/exonuclease/phosphatase; SPTR: Probable aggregation factor core protein MAFp3, isoform C
YP_004344136.1	KEGG: lel:LELG_00146 hypothetical protein; SPTR:  uncharacterized protein
YP_004344137.1	InterPro IPR001440:IPR019734; KEGG: ptm:GSPATT00038644001 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Chromosome undetermined scaffold_200, whole genome shotgun sequence; PFAM: Tetratricopeptide repeat
YP_004344138.1	KEGG: ssm:Spirs_3037 protein of unknown function DUF112 transmembrane; SPTR:  uncharacterized protein
YP_004344139.1	COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: fjo:Fjoh_1364 saccharopine dehydrogenase (NADP(+), L-lysine-forming); PFAM: Saccharopine dehydrogenase / Homospermidine synthase; PRIAM: Saccharopine dehydrogenase (NADP(+), L-glutamate-forming); SPTR: Saccharopine dehydrogenase, ; PFAM: Saccharopine dehydrogenase
YP_004344140.1	KEGG: str:Sterm_3631 ribokinase; SPTR:  uncharacterized protein
YP_004344141.1	InterPro IPR005184; KEGG: phe:Phep_3498 protein of unknown function DUF306 MetA and HslJ; PFAM: Domain of unknown function DUF306, Meta/HslJ; SPTR:  uncharacterized protein; PFAM: META domain
YP_004344142.1	InterPro IPR002018; KEGG: sli:Slin_0027 esterase/lipase-like protein; PFAM: Carboxylesterase, type B; SPTR: Esterase/lipase-like protein; PFAM: Carboxylesterase
YP_004344143.1	InterPro IPR001087; KEGG: chu:CHU_3522 hypothetical protein; PFAM: Lipase, GDSL; SPTR:  uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004344144.1	COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: chu:CHU_3521 long-chain fatty acid transport protein, outer membrane protein; PFAM: Membrane protein, aromatic hydrocarbon degradation; SPTR: Long-chain fatty acid transport protein, outer membrane protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_004344145.1	KEGG: cre:CHLREDRAFT_172047 hypothetical protein; SPTR: Predicted protein
YP_004344146.1	COGs: COG0486 GTPase; HAMAP: tRNA modification GTPase TrmE; InterPro IPR004520:IPR018948:IPR002917:IPR005225; KEGG: chu:CHU_2030 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; SPTR: tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein domain
YP_004344147.1	KEGG: cyb:CYB_2367 PKD domain-containing protein; SPTR: CHU large protein; uncharacterized
YP_004344148.1	KEGG: fbc:FB2170_00895 excinuclease ABC subunit B; SPTR: Excinuclease ABC subunit B
YP_004344149.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: fjo:Fjoh_4932 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR:  ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004344150.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: zpr:ZPR_0411 cytidine/deoxycytidylate deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR:  cytosine/adenosine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004344151.1	COGs: COG3823 Glutamine cyclotransferase; InterPro IPR007788; KEGG: msv:Mesil_2462 glutamine cyclotransferase; PFAM: Glutamine cyclotransferase; SPTR: Glutamine cyclotransferase; PFAM: Glutamine cyclotransferase
YP_004344152.1	KEGG: chu:CHU_3186 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2847)
YP_004344153.1	COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; InterPro IPR004188:IPR002319:IPR004529; KEGG: cpi:Cpin_0692 phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_004344154.1	KEGG: rrs:RoseRS_3553 hypothetical protein; SPTR:  uncharacterized protein
YP_004344155.1	KEGG: nmg:Nmag_2043 response regulator receiver protein; SPTR: Probable tungsten containing formylmethanofuran dehydrogenase, subunit B
YP_004344156.1	KEGG: shl:Shal_3922  outer membrane adhesin like proteiin; SPTR:  outer membrane adhesin like proteiin
YP_004344157.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; KEGG: phe:Phep_2588 peptidase S9 prolyl oligopeptidase active site domain protein; SPTR: Peptidase S9 prolyl oligopeptidase active site domain protein; PFAM: Prolyl oligopeptidase
YP_004344158.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001440:IPR010822:IPR019734:IPR001932; KEGG: lil:LA_1422 serine/threonine kinase; PFAM: Sporulation stage II, protein E C-terminal; Tetratricopeptide TPR-1; SMART: Protein phosphatase 2C-related; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE); Tetratricopeptide repeat
YP_004344159.1	COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015883:IPR000421; KEGG: pdi:BDI_2521 beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; Coagulation factor 5/8 type, C-terminal; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; PFAM: F5/8 type C domain; Glycosyl hydrolase 20, catalytic domain
YP_004344160.1	COGs: COG3142 Uncharacterized protein involved in copper resistance; InterPro IPR005627; KEGG: hap:HAPS_1689 copper homeostasis protein; PFAM: CutC; SPTR:  uncharacterized protein; PFAM: CutC family
YP_004344161.1	KEGG: lpn:lpg0041 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Developmentally Regulated MAPK Interacting Protein
YP_004344162.1	COGs: COG3537  alpha-1 2-mannosidase; InterPro IPR012939:IPR005887; KEGG: fjo:Fjoh_2358  alpha-1,2-mannosidase; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92; TIGRFAM: alpha-1,2-mannosidase
YP_004344163.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845:IPR010944; KEGG: cpi:Cpin_1527 AMP nucleosidase; PFAM: Nucleoside phosphorylase; SPTR: AMP nucleosidase; TIGRFAM: AMP nucleosidase, PFAM: Phosphorylase superfamily; TIGRFAM: AMP nucleosidase
YP_004344164.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dfe:Dfer_3078 hypothetical protein; SPTR:  uncharacterized protein
YP_004344165.1	COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: cpi:Cpin_2126 GumN family protein; PFAM: GumN; SPTR: GumN family protein; PFAM: GumN protein
YP_004344166.1	COGs: COG1228 Imidazolonepropionase and related amidohydrolase; HAMAP: Imidazolonepropionase; InterPro IPR005920:IPR013108; KEGG: fjo:Fjoh_4570 imidazolonepropionase; PFAM: Amidohydrolase 3; PRIAM: Imidazolonepropionase; SPTR: Imidazolonepropionase; TIGRFAM: Imidazolonepropionase; TIGRFAM: imidazolonepropionase
YP_004344167.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; HAMAP: Uncharacterised protein family UPF0102; InterPro IPR003509; KEGG: gfo:GFO_3098 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein PI23P_03032; PFAM: Uncharacterised protein family UPF0102
YP_004344168.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: chu:CHU_2455 glucosyltransferase-S; SPTR: MORN repeat variant protein; PFAM: MORN repeat variant
YP_004344169.1	COGs: COG1280  threonine efflux protein; InterPro IPR001123; KEGG: fps:FP2491 hypothetical protein; PFAM: Lysine exporter protein (LYSE/YGGA); SPTR:  uncharacterized protein; PFAM: LysE type translocator
YP_004344170.1	KEGG: zpr:ZPR_2615 hypothetical protein; SPTR:  uncharacterized protein
YP_004344171.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: pcu:pc0180 hypothetical protein; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004344172.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dfe:Dfer_3959 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase 2
YP_004344173.1	COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165:IPR012791; KEGG: rbi:RB2501_06415 probable CoA transferase, subunit B; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit
YP_004344174.1	KEGG: sus:Acid_7526 hypothetical protein; SPTR:  uncharacterized protein
YP_004344175.1	COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165:IPR012792; KEGG: fjo:Fjoh_0888 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: Succinyl-CoA, 3-ketoacid-coenzyme A transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit
YP_004344176.1	COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: zpr:ZPR_0092 bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase
YP_004344177.1	COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: cat:CA2559_01650 possible uroporphyrinogen-III synthase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD
YP_004344178.1	KEGG: tet:TTHERM_00096769 hypothetical protein; SPTR:  uncharacterized protein
YP_004344179.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: fjo:Fjoh_1290 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; PRIAM: Glutaryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004344180.1	KEGG: tye:THEYE_A2038 ATPase; SPTR: ATPase
YP_004344181.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR006638:IPR004559; KEGG: sli:Slin_2843 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase
YP_004344182.1	InterPro IPR001173; KEGG: pin:Ping_0331 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase 2
YP_004344183.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508:IPR007730; KEGG: coc:Coch_2112 cell wall hydrolase/autolysin; PFAM: Cell wall hydrolase/autolysin, catalytic; Sporulation related domain; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR:  N-acetylmuramoyl-L-alanine amidase AmiA; PFAM: N-acetylmuramoyl-L-alanine amidase; Sporulation related domain
YP_004344184.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424:IPR011344; KEGG: cpi:Cpin_6546 single-strand binding protein; PFAM: Primosome PriB/single-strand DNA-binding; SPTR: Single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004344185.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004344186.1	KEGG: ptm:GSPATT00020951001 hypothetical protein; SPTR:  uncharacterized protein
YP_004344187.1	COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: chu:CHU_3548 ribonuclease; PFAM: Ribonuclease BN-related; SPTR: Probable ribonuclease; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_004344188.1	KEGG: pfh:PFHG_00722 conserved hypothetical protein; SPTR: Xylose ABC transporter
YP_004344189.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: fps:FP0910 M61 family peptidase; PFAM: Peptidase M61; SPTR: Peptidase, M61 (Glycyl aminopeptidase) family protein; PFAM: M61 glycyl aminopeptidase
YP_004344190.1	KEGG: cpi:Cpin_4435 hypothetical protein; SPTR:  uncharacterized protein
YP_004344191.1	COGs: COG0753 Catalase; InterPro IPR018028:IPR010582; KEGG: cpi:Cpin_5844 catalase; PFAM: Catalase related subgroup; Catalase-related immune responsive; PRIAM: Catalase; SPTR:  uncharacterized protein; PFAM: Catalase; Catalase-related immune-responsive
YP_004344193.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR002078:IPR003593; KEGG: sli:Slin_3143  two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; SPTR: Nitrogen regulation protein NR; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_004344194.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594:IPR001789; KEGG: zpr:ZPR_4458 two-component system sensor histidine kinase/response regulator hybrid; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Two-component system sensor histidine kinase/response regulator hybrid; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain
YP_004344195.1	COGs: COG3550 conserved hypothetical protein; InterPro IPR012894:IPR012893; KEGG: cch:Cag_0101 hypothetical protein; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; SPTR:  uncharacterized protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain
YP_004344196.1	InterPro IPR001387; KEGG: cch:Cag_0102 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix
YP_004344197.1	KEGG: par:Psyc_0015 hypothetical protein; SPTR:  phage protein
YP_004344198.1	KEGG: mcl:MCCL_1601 hypothetical protein; SPTR:  uncharacterized protein
YP_004344199.1	InterPro IPR002884:IPR014867; KEGG: sli:Slin_3459 spore coat protein CotH; PFAM: Spore coat protein CotH; Proprotein convertase, P; SPTR: Spore coat protein CotH; PFAM: Proprotein convertase P-domain; CotH protein
YP_004344200.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942:IPR006145:IPR000748; KEGG: rbi:RB2501_08660 ribosomal large subunit pseudouridine synthase B; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004344201.1	KEGG: fjo:Fjoh_3514 hypothetical protein; SPTR:  uncharacterized protein
YP_004344202.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase, class II; InterPro IPR002313:IPR004365:IPR004364; KEGG: cat:CA2559_05510 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Lysine--tRNA ligase; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_004344203.1	KEGG: cat:CA2559_00205 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: conserved hypothetical protein, HNE_0200 family
YP_004344204.1	InterPro IPR011519; KEGG: cat:CA2559_00200 hypothetical protein; PFAM: ASPIC/UnbV; SPTR:  uncharacterized protein; PFAM: ASPIC and UnbV
YP_004344205.1	KEGG: dfe:Dfer_3756 hypothetical protein; SPTR:  uncharacterized protein
YP_004344206.1	KEGG: pas:Pars_1094 hypothetical protein; SPTR: Membrane protein involved in the export of O-antigen and teichoic acid, RfbX family
YP_004344207.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: fjo:Fjoh_0106 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_004344208.1	COGs: COG1381 Recombinational DNA repair protein (RecF pathway); HAMAP: DNA repair protein recO; InterPro IPR003717; KEGG: fps:FP0269 DNA repair protein RecO; PFAM: Recombination protein O, RecO; SPTR: DNA repair protein recO; TIGRFAM: Recombination protein O, RecO; PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_004344209.1	InterPro IPR011110; KEGG: fjo:Fjoh_0707  periplasmic ligand-binding sensor protein; SPTR:  uncharacterized protein; PFAM: Two component regulator propeller
YP_004344210.1	COGs: COG1662 Transposase and inactivated derivatives IS1 family; InterPro IPR003220:IPR005063; KEGG: fjo:Fjoh_3611 IS1 transposase; PFAM: Transposase, IS1; Insertion element protein; SPTR: IS1 transposase; PFAM: IS1 transposase; Insertion element protein
YP_004344211.1	KEGG: tet:TTHERM_00377200 Helicase conserved C-terminal domain containing protein; SPTR: Helicase conserved C-terminal domain containing protein
YP_004344212.1	KEGG: nve:NEMVE_v1g222681 hypothetical protein; SPTR: Predicted protein; TIGRFAM: RHS repeat-associated core domain
YP_004344213.1	KEGG: hhe:HH0490 hypothetical protein; SPTR: MORN repeat variant
YP_004344214.1	KEGG: nve:NEMVE_v1g222681 hypothetical protein; SPTR: Predicted protein; TIGRFAM: RHS repeat-associated core domain; TIGRFAM: RHS repeat-associated core domain
YP_004344215.1	KEGG: fjo:Fjoh_3668 hypothetical protein; SPTR:  uncharacterized protein
YP_004344216.1	KEGG: fjo:Fjoh_3669 hypothetical protein; SPTR:  uncharacterized protein
YP_004344217.1	COGs: COG1662 Transposase and inactivated derivatives IS1 family; InterPro IPR003220:IPR005063; KEGG: fjo:Fjoh_3611 IS1 transposase; PFAM: Transposase, IS1; Insertion element protein; SPTR: IS1 transposase; PFAM: IS1 transposase; Insertion element protein
YP_004344218.1	KEGG: pbe:PB103891.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344219.1	KEGG: pfl:PFL_4237 hemagglutination repeat-containing protein; SPTR: Haemagglutination repeat protein
YP_004344220.1	KEGG: fjo:Fjoh_0609 hypothetical protein; SPTR:  uncharacterized protein
YP_004344221.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: phe:Phep_1637 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; SPTR: Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase
YP_004344222.1	KEGG: fps:FP2413 hypothetical protein; SPTR:  uncharacterized protein claF
YP_004344223.1	KEGG: pmc:P9515_09211 hypothetical protein; SPTR:  uncharacterized protein
YP_004344224.1	COGs: COG4389 Site-specific recombinase; InterPro IPR011385; KEGG: coc:Coch_1488  site-specific recombinase; PFAM: Site-specific recombinase Gcr; SPTR:  site-specific recombinase; PFAM: Site-specific recombinase
YP_004344225.1	COGs: COG0060 Isoleucyl-tRNA synthetase; HAMAP: Isoleucyl-tRNA synthetase; InterPro IPR002300:IPR013155:IPR002301; KEGG: fps:FP0217 isoleucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; PRIAM: Isoleucine--tRNA ligase; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: isoleucyl-tRNA synthetase
YP_004344226.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: sli:Slin_3071 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344227.1	InterPro IPR018764; KEGG: sli:Slin_3072 anti-sigma-K factor RskA; PFAM: Anti-sigma K factor RskA; SPTR: Anti-sigma-K factor RskA; PFAM: Anti-sigma-K factor rskA
YP_004344228.1	COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: cat:CA2559_04130  carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Muramoyltetrapeptide carboxypeptidase; PFAM: LD-carboxypeptidase
YP_004344229.1	KEGG: cpi:Cpin_4554 hypothetical protein; SPTR:  uncharacterized protein
YP_004344230.1	KEGG: fjo:Fjoh_0954 hypothetical protein; SPTR:  uncharacterized protein
YP_004344231.1	KEGG: pyo:PY06945 rhoptry protein; SPTR:  uncharacterized protein
YP_004344232.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: cat:CA2559_07430 hypothetical protein; PFAM: Aldehyde dehydrogenase; PRIAM: Betaine-aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase (NAD) family protein; PFAM: Aldehyde dehydrogenase; TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase
YP_004344233.1	KEGG: aae:aq_2147 peptidoglycan associated lipoprotein; SPTR: Peptidoglycan associated lipoprotein; PFAM: OmpA family
YP_004344234.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: bvu:BVU_0015 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004344235.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: dfe:Dfer_4094 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004344236.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: sli:Slin_3330 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004344237.1	KEGG: dfe:Dfer_0535 hypothetical protein; SPTR:  uncharacterized protein
YP_004344238.1	COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: pfs:PFLU3350 hypothetical protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Fasciclin domain protein; PFAM: Fasciclin domain
YP_004344239.1	COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterPro IPR006668:IPR000644:IPR006667:IPR006669; KEGG: fbc:FB2170_04220 magnesium transporter; PFAM: MgtE magnesium transporter, integral membrane region; Magnesium transporter, MgtE intracellular domain; Cystathionine beta-synthase, core; SPTR:  uncharacterized protein; TIGRFAM: Divalent cation transporter; PFAM: MgtE intracellular N domain; Divalent cation transporter; CBS domain; TIGRFAM: Mg2+ transporter (mgtE)
YP_004344240.1	KEGG: chu:CHU_0602 lipid A core--O-antigen ligase; SPTR: Lipid A core--O-antigen ligase
YP_004344241.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: chu:CHU_0098 C-terminal processing peptidase-3; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004344242.1	HAMAP: Ribonuclease P; InterPro IPR000100; KEGG: fbc:FB2170_06100 ribonuclease P; SPTR: Ribonuclease P protein component; TIGRFAM: Ribonuclease P; PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_004344243.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803:IPR015273:IPR002308; KEGG: fjo:Fjoh_2268 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_004344244.1	KEGG: hap:HAPS_0262 hypothetical protein; SPTR:  uncharacterized protein
YP_004344245.1	COGs: COG0270 Site-specific DNA methylase; InterPro IPR001525; KEGG: fps:FP2274 type II modification methyltransferase HpaII; PFAM: DNA methylase, C-5 cytosine-specific; PRIAM: DNA (cytosine-5-)-methyltransferase; SPTR: Cytosine-specific methyltransferase; TIGRFAM: DNA methylase, C-5 cytosine-specific; PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm)
YP_004344246.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: gym:GYMC10_1289 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004344247.1	COGs: COG1522 Transcriptional regulators; InterPro IPR019887:IPR019888; KEGG: dfe:Dfer_4405 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; SPTR: AsnC family transcriptional regulator; PFAM: AsnC family
YP_004344248.1	KEGG: fjo:Fjoh_1849 hypothetical protein; SPTR:  uncharacterized protein
YP_004344249.1	KEGG: fjo:Fjoh_1010 hypothetical protein; SPTR:  uncharacterized protein
YP_004344250.1	KEGG: fps:FP2496 hypothetical protein; SPTR:  uncharacterized protein
YP_004344251.1	KEGG: fjo:Fjoh_1008 hypothetical protein; SPTR:  uncharacterized protein
YP_004344252.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: phe:Phep_3811 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004344253.1	KEGG: bpi:BPLAN_263  phosphopantetheinyl transferase; SPTR: Siderophore (Surfactin) biosynthesis regulatory protein
YP_004344254.1	InterPro IPR005079; KEGG: dfe:Dfer_5789 peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; SPTR: Peptidase C45 acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
YP_004344255.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: dfe:Dfer_5790 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase/ligase; SPTR: Phenylacetate--CoA ligase; PFAM: AMP-binding enzyme
YP_004344256.1	KEGG: chu:CHU_3634 hypothetical protein; SPTR:  uncharacterized protein
YP_004344257.1	COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR013027; KEGG: dfe:Dfer_2003 tryptophan halogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Tryptophan halogenase; PFAM: Tryptophan halogenase
YP_004344258.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: dfe:Dfer_2002 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; PRIAM: All-trans-retinol 13,14-reductase; SPTR: FAD dependent oxidoreductase; PFAM: Flavin containing amine oxidoreductase
YP_004344259.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR002123:IPR013216; KEGG: dfe:Dfer_2001 MCP methyltransferase, CheR-type; PFAM: Phospholipid/glycerol acyltransferase; Methyltransferase type 11; SMART: Phospholipid/glycerol acyltransferase; SPTR: MCP methyltransferase, CheR-type; PFAM: Methyltransferase domain; Acyltransferase; MMPL family; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004344260.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002938; KEGG: bha:BH1848 hypothetical protein; PFAM: Monooxygenase, FAD-binding; SPTR: BH1848 protein; PFAM: Flavin containing amine oxidoreductase
YP_004344261.1	InterPro IPR001077; KEGG: dfe:Dfer_5794 methyltransferase type 12; PFAM: O-methyltransferase, family 2; SPTR: Methyltransferase type 12; PFAM: O-methyltransferase
YP_004344262.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106; KEGG: dfe:Dfer_1999 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase
YP_004344263.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: dfe:Dfer_1998 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004344264.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: dfe:Dfer_1997 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_004344265.1	InterPro IPR006163; KEGG: dfe:Dfer_1996 hypothetical protein; PFAM: Phosphopantetheine-binding; SPTR:  uncharacterized protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004344266.1	COGs: COG4261 acyltransferase; InterPro IPR004960; KEGG: dfe:Dfer_1995 lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_004344267.1	KEGG: dfe:Dfer_1994 hypothetical protein; SPTR:  uncharacterized protein
YP_004344268.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: dfe:Dfer_1993 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004344269.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: dfe:Dfer_1992 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_004344270.1	KEGG: dfe:Dfer_1991 hypothetical protein; SPTR:  uncharacterized protein
YP_004344271.1	KEGG: bvu:BVU_1019 acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004344272.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: dfe:Dfer_1989 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_004344273.1	KEGG: dfe:Dfer_1988 3-oxoacyl-(acyl-carrier-protein) synthase-like protein; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase-like protein
YP_004344274.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: dfe:Dfer_1987 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004344275.1	InterPro IPR004564; KEGG: dfe:Dfer_1986 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; SPTR: Outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_004344276.1	InterPro IPR013114; KEGG: fjo:Fjoh_1081 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; SPTR: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase, FabA/FabZ; PFAM: FabA-like domain
YP_004344277.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173:IPR018639; KEGG: dfe:Dfer_1984 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; Protein of unknown function DUF2062; SPTR: Glycosyl transferase 2; PFAM: Uncharacterized protein conserved in bacteria (DUF2062); Glycosyl transferase 2
YP_004344278.1	KEGG: dfe:Dfer_5796 hypothetical protein; SPTR:  uncharacterized protein
YP_004344279.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013747; KEGG: chu:CHU_0390 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; Thiolase, N-terminal domain
YP_004344280.1	KEGG: dfe:Dfer_5798 hypothetical protein; SPTR:  uncharacterized protein
YP_004344281.1	KEGG: dfe:Dfer_5799 hypothetical protein; SPTR:  uncharacterized protein
YP_004344282.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: dfe:Dfer_5800 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004344283.1	InterPro IPR013525; KEGG: dfe:Dfer_5801 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: ABC-2 type transporter; PFAM: ABC-2 type transporter
YP_004344284.1	KEGG: chu:CHU_0385 acyl carrier protein; SPTR: Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004344285.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031; KEGG: dfe:Dfer_5803 beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: Beta-ketoacyl synthase; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_004344286.1	KEGG: dfe:Dfer_2004 hypothetical protein; SPTR:  uncharacterized protein
YP_004344287.1	InterPro IPR006694; KEGG: gfo:GFO_0302 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR: Fatty acid hydroxylase; PFAM: Fatty acid hydroxylase superfamily
YP_004344288.1	COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: phe:Phep_3450 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; SPTR: Porphobilinogen deaminase; PFAM: Uroporphyrinogen-III synthase HemD
YP_004344289.1	COGs: COG0181 Porphobilinogen deaminase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; InterPro IPR000860; KEGG: phe:Phep_3450 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; SPTR: Porphobilinogen deaminase; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_004344290.1	COGs: COG0373 Glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; InterPro IPR000343:IPR015895:IPR006151; KEGG: phe:Phep_3451 glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; SPTR: Glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; TIGRFAM: glutamyl-tRNA reductase
YP_004344291.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: sli:Slin_1632 carboxyl transferase; PFAM: Carboxyl transferase; PRIAM: Propionyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase domain
YP_004344292.1	KEGG: ate:Athe_0718 KWG repeat protein; SPTR: KWG
YP_004344293.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR001667:IPR003156:IPR004610; KEGG: dfe:Dfer_4050 single-stranded-DNA-specific exonuclease RecJ; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_004344294.1	KEGG: aoe:Clos_2517 hypothetical protein; SPTR:  uncharacterized protein
YP_004344295.1	HAMAP: Twin-arginine translocation protein TatA/E; InterPro IPR006312:IPR003369; KEGG: fps:FP2484  sec-independent protein translocase (twin-arginine translocation protein); PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Sec-independent protein translocase tatA/E homolog; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_004344296.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; InterPro IPR004412:IPR000120; KEGG: chu:CHU_0025 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_004344297.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258:IPR018392:IPR002482; KEGG: pdi:BDI_2556 glycoside hydrolase; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Glycoside hydrolase 23; PFAM: Transglycosylase SLT domain; LysM domain
YP_004344298.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fnu:FN0542 beta 1,4 glucosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Lipopolysaccharide biosynthesis glycosyltransferase; PFAM: Glycosyl transferase 2
YP_004344299.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: reu:Reut_A2559 glycosyl transferase; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyl transferase, family 9; PFAM: Glycosyltransferase 9 (heptosyltransferase)
YP_004344300.1	KEGG: cat:CA2559_07635 hypothetical protein; SPTR:  uncharacterized protein
YP_004344301.1	COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: phe:Phep_3335 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004344302.1	KEGG: pmz:HMPREF0659_A6035 hypothetical protein; SPTR:  uncharacterized protein
YP_004344303.1	KEGG: pbe:PB000598.02.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344304.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; InterPro IPR003837; KEGG: chu:CHU_2829 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_004344305.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: phe:Phep_2579 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: Phospholipid/glycerol acyltransferase; manually curated; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004344306.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305:IPR002306; KEGG: coc:Coch_0656 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_004344307.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: cts:Ctha_2624 extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Extracellular solute-binding protein family 5; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_004344308.1	COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: mmh:Mmah_0749 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_004344309.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: fbc:FB2170_02885 histidine kinase; PFAM: Signal transduction histidine kinase, internal region; SPTR: Two component sensor histidine kinase; PFAM: Histidine kinase
YP_004344310.1	KEGG: pdi:BDI_1925 hypothetical protein; SPTR:  uncharacterized protein
YP_004344311.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004115:IPR004524; KEGG: zpr:ZPR_4561 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; PRIAM: Aspartate--tRNA ligase; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_004344312.1	KEGG: pay:PAU_00663 copper homeostasis protein (lipoprotein); SPTR: Copper homeostasis protein (Lipoprotein); PFAM: Uncharacterized lipoprotein NlpE involved in copper resistance
YP_004344313.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: gtn:GTNG_0896 NADPH quinone oxidoreductase, PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: NADPH:quinone reductase 2; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004344314.1	InterPro IPR006016; KEGG: fjo:Fjoh_1627 UspA domain-containing protein; PFAM: UspA; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004344315.1	COGs: COG0313 methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; InterPro IPR000878:IPR008189; KEGG: fps:FP1061 methyltransferase; PFAM: Tetrapyrrole methylase; SPTR: Methyltransferase; TIGRFAM: Uncharacterised protein family UPF0011; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004344316.1	InterPro IPR010432; KEGG: chu:CHU_2132 hypothetical protein; PFAM: RDD; SPTR:  uncharacterized protein; PFAM: RDD family
YP_004344317.1	COGs: COG2374 extracellular nuclease; InterPro IPR005135; KEGG: fbc:FB2170_05240 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR:  uncharacterized protein; PFAM: Endonuclease/Exonuclease/phosphatase
YP_004344318.1	COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: chu:CHU_1401 M42 glutamyl aminopeptidase; PFAM: Peptidase M42; PRIAM: Cellulase; SPTR: Endoglucanase; PFAM: M42 glutamyl aminopeptidase
YP_004344319.1	InterPro IPR000601; KEGG: fps:FP2413 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein claF; PFAM: PKD domain
YP_004344320.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: pdi:BDI_2658  vitamin B12 receptor precursor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR:  uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004344321.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: cpi:Cpin_0532 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_004344322.1	COGs: COG0738 Fucose permease; KEGG: fps:FP1608  sugar-transporting permease; SPTR:  sugar-transporting permease
YP_004344323.1	KEGG: gfo:GFO_3148 succinate dehydrogenase cytochrome b subunit; SPTR: Succinate dehydrogenase cytochrome B subunit; TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family
YP_004344324.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003953:IPR004112:IPR011280; KEGG: fps:FP0093 succinate dehydrogenase flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; PRIAM: Succinate dehydrogenase; SPTR: Succinate dehydrogenase flavoprotein subunit; TIGRFAM: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit, low-GC Gram-positive bacteria; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup
YP_004344325.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR001041; KEGG: fps:FP0095 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; PFAM: Ferredoxin; SPTR: Succinate dehydrogenase; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_004344326.1	InterPro IPR003137; KEGG: chu:CHU_0220 hypothetical protein; PFAM: Protease-associated PA; SPTR: Extracellular metalloprotease, MEP family; PFAM: PA domain
YP_004344327.1	InterPro IPR018765; KEGG: kcr:Kcr_0385 hypothetical protein; PFAM: Protein of unknown function DUF2341; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF2341)
YP_004344328.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003661:IPR003594; KEGG: phe:Phep_4147 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Two-component sensor histidine kinase (Sensor protein AtoS); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004344329.1	COGs: COG0572 Uridine kinase; KEGG: dfe:Dfer_4546 phosphoribulokinase/uridine kinase; PRIAM: Uridine kinase; SPTR: Uridine kinase; PFAM: Phosphoribulokinase / Uridine kinase
YP_004344330.1	KEGG: cdu:CD36_83870 cell division control protein 25; SPTR: Cell division control protein 25
YP_004344331.1	InterPro IPR000866; KEGG: rmr:Rmar_0035 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: Redoxin
YP_004344332.1	KEGG: swd:Swoo_0115 lysyl endopeptidase; PRIAM: Lysyl endopeptidase; SPTR: Lysyl endopeptidase
YP_004344333.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR003593:IPR004504; KEGG: phe:Phep_0125 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA
YP_004344334.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004344335.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004344336.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: Possible filamentous hemagglutinin outer membrane protein
YP_004344337.1	COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR003714:IPR006596; KEGG: chu:CHU_2279 PhoH-related protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; SPTR: PhoH family protein; PFAM: PhoH-like protein
YP_004344338.1	KEGG: dfe:Dfer_5791 hypothetical protein; SPTR:  uncharacterized protein
YP_004344339.1	COGs: COG4420 membrane protein; InterPro IPR010406; KEGG: fjo:Fjoh_2506 hypothetical protein; PFAM: Protein of unknown function DUF1003; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1003)
YP_004344340.1	KEGG: chu:CHU_2311 hypothetical protein; SPTR:  uncharacterized protein
YP_004344341.1	KEGG: bbe:BBR47_27710 hypothetical protein
YP_004344342.1	KEGG: gvi:gll4064 hypothetical protein; SPTR: Peptidase S53 propeptide; TIGRFAM: Gloeo_Verruco repeat; TIGRFAM: Gloeo_Verruco repeat
YP_004344343.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR001807; KEGG: cpi:Cpin_1369 chloride channel core; PFAM: Chloride channel, voltage gated; SPTR: Chloride channel core; PFAM: Voltage gated chloride channel
YP_004344344.1	KEGG: mac:MA0385 cobaltochelatase subunit CobN; SPTR:  uncharacterized protein
YP_004344345.1	KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR:  uncharacterized protein
YP_004344346.1	COGs: COG0143 Methionyl-tRNA synthetase; HAMAP: Methionyl-tRNA synthetase; InterPro IPR015413:IPR002547:IPR002304:IPR004495; KEGG: chu:CHU_2689 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; PRIAM: Methionine--tRNA ligase; SPTR: Methionine--tRNA ligase; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; PFAM: tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_004344347.1	KEGG: cpi:Cpin_3058 lactoylglutathione lyase; SPTR:  uncharacterized protein
YP_004344348.1	KEGG: uma:UM01916.1 hypothetical protein; SPTR:  uncharacterized protein
YP_004344349.1	KEGG: chu:CHU_0584 hypothetical protein; SPTR:  uncharacterized protein
YP_004344350.1	InterPro IPR004360; KEGG: fbc:FB2170_00650 glyoxalase/dioxygenase superfamily protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR:  glyoxalase/bleomycin resistance protein/dioxygenase; manually curated; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004344351.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cpi:Cpin_4185 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004344352.1	COGs: COG1570 Exonuclease VII large subunit; InterPro IPR020579; KEGG: tye:THEYE_A1672 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; SPTR: Exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_004344353.1	InterPro IPR003761; KEGG: phe:Phep_2198 exonuclease VII small subunit; PFAM: Exonuclease VII, small subunit; SPTR: Exodeoxyribonuclease VII small subunit; PFAM: Exonuclease VII small subunit
YP_004344354.1	COGs: COG1918 Fe2+ transport system protein A; InterPro IPR007167; KEGG: chu:CHU_3725 ferrous iron transport protein A; PFAM: Ferrous iron transporter, FeoA subunit; SPTR: Conserved domain protein; PFAM: FeoA domain
YP_004344355.1	COGs: COG0370 Fe2+ transport system protein B; InterProIPR002917:IPR011619:IPR011642:IPR011640:IPR 003373; KEGG: dfe:Dfer_5086 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; SPTR: Ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_004344357.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: mru:mru_1194 LemA family protein; PFAM: LemA; SPTR: LemA; PFAM: LemA family
YP_004344358.1	COGs: COG4907 membrane protein; InterPro IPR018702; KEGG: rlt:Rleg2_0534 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR:  uncharacterized protein; PFAM: Predicted membrane protein (DUF2207)
YP_004344359.1	COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: hch:HCH_02808 carbamoyl transferase; PFAM: Carbamoyltransferase; SPTR: Predicted carbamoyl transferase, NodU family; PFAM: Carbamoyltransferase
YP_004344360.1	COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: coc:Coch_2104 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; SPTR:  uncharacterized protein; PFAM: S4 domain
YP_004344361.1	COGs: COG2315 conserved hypothetical protein; KEGG: cts:Ctha_2204 protein of unknown function DUF419; SPTR: MmcQ; PFAM: Protein of unknown function (DUF419)
YP_004344362.1	COGs: COG3228 conserved hypothetical protein; InterPro IPR010384:IPR004027; KEGG: phe:Phep_0178 protein of unknown function DUF980; PFAM: Protein of unknown function DUF980; SEC-C motif; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; PFAM: Phosphoenolpyruvate:glucose-phosphotransferase regulator; SEC-C motif
YP_004344363.1	InterPro IPR001845; KEGG: gfo:GFO_2196 transcription regulator ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR:  transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family
YP_004344364.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; InterPro IPR004588; KEGG: phe:Phep_3456 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_004344365.1	COGs: COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase; InterPro IPR013217; KEGG: cat:CA2559_03350 hypothetical protein; PFAM: Methyltransferase type 12; SPTR:  uncharacterized protein; PFAM: Methyltransferase domain
YP_004344366.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; HAMAP: Glucose-inhibited division protein A; InterPro IPR002218:IPR004416; KEGG: fbc:FB2170_05895 glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_004344367.1	COGs: COG0319 metal-dependent hydrolase; HAMAP: Uncharacterised protein family UPF0054; InterPro IPR002036; KEGG: fps:FP0002 hypothetical protein; PFAM: Uncharacterised protein family UPF0054; SPTR:  metalloprotease BSIG_01388; TIGRFAM: Uncharacterised protein family UPF0054; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family
YP_004344368.1	COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); KEGG: chu:CHU_3500 anti-sigma regulatory factor; SPTR: Anti-sigma regulatory factor
YP_004344369.1	COGs: COG1196 Chromosome segregation ATPase; KEGG: chu:CHU_3499 hypothetical protein; SPTR:  uncharacterized protein
YP_004344370.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020058:IPR004527; KEGG: chu:CHU_3373 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; PRIAM: Glutamate--tRNA ligase; SPTR:  uncharacterized protein; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_004344371.1	COGs: COG1539 Dihydroneopterin aldolase; InterPro IPR006157:IPR006156; KEGG: fjo:Fjoh_1014 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SPTR:  dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain
YP_004344372.1	KEGG: phe:Phep_2593 conserved repeat domain protein; SPTR:  uncharacterized protein
YP_004344373.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_5681 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR:  RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344374.1	InterPro IPR013740; KEGG: cat:CA2559_08356 hypothetical protein; PFAM: Redoxin; SPTR:  uncharacterized protein; PFAM: Redoxin
YP_004344375.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: phe:Phep_3822 peptidase M28; PFAM: Peptidase M28; SPTR: Possible aminopeptidase; PFAM: Peptidase M28
YP_004344376.1	COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: cat:CA2559_03435 ribose 5-phosphate isomerase B, PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR:  uncharacterized protein; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_004344377.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: gfo:GFO_2644 two-component response transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004344378.1	InterPro IPR000209; KEGG: sdn:Sden_3671 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: S8 family peptidase; PFAM: Subtilase
YP_004344379.1	InterPro IPR000182; KEGG: fjo:Fjoh_1373 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004344380.1	KEGG: nwa:Nwat_0162 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2971)
YP_004344381.1	KEGG: mmo:MMOB1480 cysteinyl-tRNA synthetase; SPTR: Cysteinyl-tRNA synthetase
YP_004344382.1	COGs: COG0557 Exoribonuclease R; InterProIPR013223:IPR001900:IPR003029:IPR011805:IPR 004476:IPR011129; KEGG: phe:Phep_1629 ribonuclease R; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA binding domain; SPTR: Exoribonuclease II; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_004344383.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: bth:BT_2012  ATPase; SPTR: ATPase
YP_004344384.1	COGs: COG1528 Ferritin-like protein; InterPro IPR008331; KEGG: fbc:FB2170_04345 RsgA; PFAM: Ferritin/Dps protein; PRIAM: Ferroxidase; SPTR: RsgA; PFAM: Ferritin-like domain
YP_004344385.1	COGs: COG2114 Adenylate cyclase 3 (some protein contain HAMP domain); InterPro IPR011110:IPR011123:IPR001054:IPR003607; KEGG: cps:CPS_2607 GGDEF domain-containing protein; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Two component regulator three Y; Two component regulator propeller; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Metal-dependent phosphohydrolase, HD domain; SPTR: GGDEF domain protein; PFAM: Adenylate and Guanylate cyclase catalytic domain; Y_Y_Y domain; Two component regulator propeller
YP_004344386.1	InterPro IPR006016; KEGG: hmu:Hmuk_2014 UspA domain protein; PFAM: UspA; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004344387.1	InterPro IPR004993; KEGG: cpi:Cpin_1029 GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter; SPTR: GH3 auxin-responsive promoter; PFAM: GH3 auxin-responsive promoter
YP_004344388.1	InterPro IPR000620; KEGG: fps:FP0612 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Predicted permease; PFAM: EamA-like transporter family
YP_004344389.1	COGs: COG0158 Fructose-1 6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; InterPro IPR000146; KEGG: cat:CA2559_02300 fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase; PFAM: Fructose-1-6-bisphosphatase
YP_004344390.1	KEGG: dwi:Dwil_GK22775 GK22775 gene product from transcript GK22775-RA; SPTR: GK22775
YP_004344391.1	KEGG: ptm:GSPATT00014412001 hypothetical protein; SPTR: Chromosome undetermined scaffold_41, whole genome shotgun sequence
YP_004344392.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: bth:BT_3190  RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344393.1	KEGG: bth:BT_3188 hypothetical protein; SPTR:  uncharacterized protein
YP_004344394.1	KEGG: zpr:ZPR_0313 starch-binding domain-like protein; SPTR: Starch-binding domain-like protein
YP_004344395.1	COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterProIPR003711:IPR011545:IPR001650:IPR005118:IPR 004576:IPR014001; KEGG: gfo:GFO_3159 transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Transcription-repair coupling factor; TIGRFAM: Transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_004344396.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: sli:Slin_2152 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: MloA; PFAM: Fic/DOC family
YP_004344397.1	InterPro IPR000601:IPR003305; KEGG: cpi:Cpin_4712 hypothetical protein; PFAM: PKD; Carbohydrate-binding, CenC-like; SMART: PKD; SPTR: Collagenase, ; PFAM: Pregnancy-associated plasma protein-A; PKD domain
YP_004344398.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: zpr:ZPR_4306 BlaI-like antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor; SPTR:  antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor
YP_004344399.1	COGs: COG3579 Aminopeptidase C; InterPro IPR000668; KEGG: cpi:Cpin_0714 peptidase C1B bleomycin hydrolase; PFAM: Peptidase C1A, papain C-terminal; SPTR: Peptidase C1B bleomycin hydrolase; PFAM: Peptidase C1-like family
YP_004344400.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: sli:Slin_2383 DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; SPTR: DNA protecting protein DprA; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_004344401.1	KEGG: ptm:GSPATT00025290001 hypothetical protein; SPTR: Chromosome undetermined scaffold_87, whole genome shotgun sequence
YP_004344402.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; HAMAP: Excinuclease ABC, C subunit; InterPro IPR000305:IPR001162:IPR004791; KEGG: fjo:Fjoh_0726 excinuclease ABC subunit C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; SMART: Excinuclease ABC, C subunit, N-terminal; SPTR: UvrABC system protein C; TIGRFAM: Excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_004344403.1	COGs: COG4783  Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: cts:Ctha_0444 peptidase M48 Ste24p; PFAM: Peptidase M48; SPTR: Peptidase, M48 family; PFAM: Peptidase M48
YP_004344404.1	KEGG: cat:CA2559_04895 metal-dependent hydrolase; SPTR:  uncharacterized protein; PFAM:  cyclase
YP_004344405.1	KEGG: scl:sce0930 DNA-directed RNA polymerase; SPTR: DNA-directed RNA polymerase
YP_004344406.1	COGs: COG1981 membrane protein; InterPro IPR005265:IPR014351; KEGG: phe:Phep_3443 hypothetical protein; PFAM: Uncharacterised protein family UPF0093; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00701; PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein
YP_004344407.1	InterPro IPR001845; KEGG: fjo:Fjoh_4418 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004344408.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_03685 enoyl-CoA hydratase/carnithine racemase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase
YP_004344409.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: mca:MCA1772 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004344410.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004344411.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004344412.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004344413.1	InterPro IPR007730; KEGG: fbc:FB2170_05560 hypothetical protein; PFAM: Sporulation related domain; SPTR:  uncharacterized protein; PFAM: Sporulation related domain
YP_004344414.1	KEGG: cpi:Cpin_1691 hypothetical protein; SPTR:  uncharacterized protein
YP_004344415.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: dfe:Dfer_1562 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix
YP_004344416.1	KEGG: fjo:Fjoh_2248 TonB-dependent receptor; SPTR: Probable integral outer membrane protein
YP_004344417.1	InterPro IPR001440:IPR019734; KEGG: zpr:ZPR_0842 tetratricopeptide repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide repeat protein
YP_004344418.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR003439:IPR003593; KEGG: fba:FIC_02143 cell division transporter, ATP-binding protein FtsE; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_004344419.1	KEGG: yli:YALI0D11132g YALI0D11132p
YP_004344420.1	KEGG: pdi:BDI_1457  mannosyltransferase; SPTR:  uncharacterized protein
YP_004344421.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_2781 A-glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase 4 protein; PFAM: Glycosyl transferases group 1
YP_004344422.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: pdi:BDI_2829 extracellular protease, PFAM: PKD; PRIAM: Lysyl endopeptidase; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004344423.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: phe:Phep_3446 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004344424.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR002125; KEGG: zpr:ZPR_0421 cytidine/deoxycytidylate deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR:  deoxycytidylate deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004344425.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: pdi:BDI_3349 carboxy-terminal processing protease precursor; PFAM: Peptidase S41; PDZ/DHR/GLGF; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: Carboxy-terminal processing protease; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004344426.1	KEGG: ehi:EHI_075150 NAD-specific glutamate dehydrogenase; SPTR: NAD-specific glutamate dehydrogenase
YP_004344427.1	InterPro IPR001818; KEGG: dfe:Dfer_1341 conserved repeat domain protein; PFAM: Peptidase M10, metallopeptidase; SPTR: Conserved repeat domain protein
YP_004344428.1	KEGG: chu:CHU_2552 hypothetical protein; SPTR:  uncharacterized protein
YP_004344429.1	KEGG: fbc:FB2170_01871 OmpA/MotB; SPTR: OmpA/MotB
YP_004344430.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171:IPR004620; KEGG: cpi:Cpin_0867 methylenetetrahydrofolate reductase (NAD(P)H); PFAM: Methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_004344431.1	KEGG: lbf:LBF_1746 hypothetical protein; SPTR:  uncharacterized protein
YP_004344432.1	KEGG: tet:TTHERM_00037500 TPR Domain containing protein; SPTR: TPR Domain containing protein; PFAM: Tetratricopeptide repeat
YP_004344433.1	KEGG: ptm:GSPATT00004625001 hypothetical protein; SPTR:  uncharacterized protein
YP_004344434.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; InterPro IPR005814:IPR004639; KEGG: phe:Phep_3448 glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; PRIAM: Glutamate-1-semialdehyde 2,1-aminomutase; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_004344435.1	COGs: COG3844 Kynureninase; InterPro IPR000192:IPR010111; KEGG: fjo:Fjoh_0506 kynureninase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Kynureninase; SPTR: Kynureninase; TIGRFAM: Kynureninase; PFAM: Aminotransferase class-V; TIGRFAM: kynureninase
YP_004344436.1	COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR006076; KEGG: fjo:Fjoh_0495 kynurenine 3-monooxygenase; PFAM: FAD dependent oxidoreductase; PRIAM: Kynurenine 3-monooxygenase; SPTR: Kynurenine 3-monooxygenase; PFAM: FAD binding domain
YP_004344437.1	KEGG: sfr:Sfri_1017 Ig-like, group 2; SPTR:  uncharacterized protein
YP_004344438.1	COGs: COG3463 membrane protein; InterPro IPR018650; KEGG: mlu:Mlut_09720 predicted membrane protein; PFAM: Protein of unknown function DUF2079, membrane; SPTR: Predicted membrane protein; PFAM: Predicted membrane protein (DUF2079)
YP_004344439.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660; KEGG: zpr:ZPR_0339 hypothetical protein; PFAM: Arsenate reductase-like; SPTR:  uncharacterized protein; PFAM: ArsC family
YP_004344440.1	KEGG: sml:Smlt4613 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Suppressor of fused protein (SUFU)
YP_004344441.1	KEGG: bld:BLi01518 fosfomycin resistance protein FosB; SPTR: Metallothiol transferase fosB
YP_004344442.1	KEGG: gfo:GFO_1111 hypothetical protein; SPTR:  uncharacterized protein
YP_004344443.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR013512:IPR013644:IPR003821; KEGG: sli:Slin_5921 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004344444.1	COGs: COG1238 membrane protein; KEGG: ant:Arnit_0023 SNARE associated Golgi protein-related protein; SPTR: SNARE associated Golgi protein-related protein; PFAM: SNARE associated Golgi protein
YP_004344445.1	KEGG: rmr:Rmar_1071 hypothetical protein; SPTR:  uncharacterized protein
YP_004344446.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: cpi:Cpin_1023 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase
YP_004344447.1	KEGG: fjo:Fjoh_3421 hypothetical protein; SPTR:  uncharacterized protein
YP_004344448.1	InterPro IPR008160; KEGG: fjo:Fjoh_3420 hypothetical protein; PFAM: Collagen triple helix repeat; SPTR:  uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies)
YP_004344449.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: fjo:Fjoh_0009 aminotransferase, class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Kynurenine--oxoglutarate transaminase; SPTR: 2-keto-4-methylthiobutyrate aminotransferase; PFAM: Aminotransferase class I and II
YP_004344450.1	KEGG: mma:MM_2515 sensory transduction histidine kinase; SPTR: Hypothetical sensory transduction histidine kinase
YP_004344451.1	COGs: COG1003 Glycine cleavage system protein P (pyridoxal-binding) C-terminal domain; HAMAP: Glycine cleavage system P-protein; InterPro IPR020580:IPR003437; KEGG: gca:Galf_2806 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; SPTR: Glycine dehydrogenase [decarboxylating]; TIGRFAM: Glycine cleavage system P-protein; PFAM: Glycine cleavage system P-protein; TIGRFAM: glycine dehydrogenase (decarboxylating)
YP_004344452.1	KEGG: llo:LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat); SPTR:  transmembrane protein (Fibronectin III domain and Gp5 C-terminal repeat)
YP_004344453.1	InterPro IPR013431; KEGG: fjo:Fjoh_0804 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004344454.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_3976 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004344455.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: cpi:Cpin_6624 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004344456.1	KEGG: tpd:Teth39_1765 extracellular solute-binding protein; SPTR: Extracellular solute-binding protein, family 3
YP_004344457.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: cpi:Cpin_5227 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein
YP_004344458.1	COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; InterPro IPR001853; KEGG: fjo:Fjoh_2718 DsbA oxidoreductase; PFAM: DSBA oxidoreductase; SPTR: DSBA oxidoreductase; PFAM: DSBA-like thioredoxin domain
YP_004344459.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004344460.1	KEGG: dfe:Dfer_0537 hypothetical protein; SPTR: Probable aggregation factor core protein MAFp3, isoform C
YP_004344461.1	COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: cpi:Cpin_1188 peptidase M23; PFAM: Peptidase M23; SPTR:  uncharacterized protein; PFAM: Peptidase M23
YP_004344462.1	KEGG: fjo:Fjoh_1066 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004344463.1	InterPro IPR001440:IPR019734; KEGG: cpi:Cpin_1186 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004344464.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005835; KEGG: cat:CA2559_03545 glucose-1-phosphate thymidylyltransferase, PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylylransferase, long form
YP_004344465.1	COGs: COG0756 dUTPase; HAMAP: Deoxyuridine 5'-triphosphate nucleotidohydrolase; InterPro IPR008180:IPR008181; KEGG: cat:CA2559_03550 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: DeoxyUTP pyrophosphatase domain; PRIAM: dUTP diphosphatase; SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_004344466.1	KEGG: cat:CA2559_03460 hypothetical protein; SPTR: Probable gliding motility protein; TIGRFAM: gliding motility-associated lipoprotein GldH
YP_004344467.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: zpr:ZPR_0090 PSP1 domain-containing protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_004344468.1	KEGG: ehi:EHI_076850 hypothetical protein; SPTR: Leucine-rich repeat containing protein
YP_004344469.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: bvu:BVU_1829  DNA polymerase III, delta subunit; SPTR:  DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta' subunit
YP_004344470.1	KEGG: pyo:PY01156 hypothetical protein; SPTR:  uncharacterized protein PY01156
YP_004344471.1	KEGG: tva:TVAG_237760 intermediate dynein chain; SPTR: Intermediate dynein chain
YP_004344472.1	KEGG: pph:Ppha_2580 TonB-dependent receptor; SPTR: TonB-dependent receptor
YP_004344473.1	KEGG: ath:AT4G14080 MEE48 (maternal effect embryo arrest 48); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds; SPTR: Hypothetical cytosolic protein
YP_004344474.1	KEGG: sto:ST2626 thermopsin; SPTR: 738aa long hypothetical thermopsin
YP_004344475.1	KEGG: pmz:HMPREF0659_A6819 hypothetical protein; SPTR: Hypothetical cytosolic protein
YP_004344476.1	KEGG: api:100162552 similar to filamin, SPTR: Hypothetical cytosolic protein
YP_004344477.1	KEGG: sii:LD85_2174 hypothetical protein; SPTR: Hypothetical cytosolic protein
YP_004344478.1	KEGG: tet:TTHERM_00317270 hypothetical protein; SPTR: Iron-regulated protein FrpC
YP_004344479.1	KEGG: fps:FP0285 hypothetical protein; SPTR:  uncharacterized protein
YP_004344480.1	KEGG: cpi:Cpin_0300 hypothetical protein; SPTR:  uncharacterized protein
YP_004344481.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: chu:CHU_0080 glycosyl transferase; PFAM: Glycosyl transferase, family 9; SPTR: Glycosyltransferase, family 9; PFAM: Glycosyltransferase 9 (heptosyltransferase)
YP_004344482.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: fjo:Fjoh_0987 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_004344483.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR001347:IPR019490:IPR011857; KEGG: aas:Aasi_1065 hypothetical protein; PFAM: Bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase, C-terminal; Sugar isomerase (SIS); SPTR: Bifunctional phosphoglucose/phosphomannose isomerase; TIGRFAM: Bifunctional glucose-6-phosphate/mannose-6-phosphate isomerase; PFAM: Bacterial phospho-glucose isomerase C-terminal region; SIS domain; TIGRFAM: bifunctional phosphoglucose/phosphomannose isomerase
YP_004344484.1	KEGG: phe:Phep_3825 hypothetical protein; SPTR:  uncharacterized protein
YP_004344485.1	COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR004455:IPR013549:IPR010099; KEGG: zpr:ZPR_3124 NAD(P)-binding protein; PFAM: Domain of unknown function DUF1731, C-terminal; NADP oxidoreductase, coenzyme F420-dependent; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777
YP_004344486.1	KEGG: cpi:Cpin_1981 hypothetical protein; SPTR:  uncharacterized protein
YP_004344487.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: cpi:Cpin_1180 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Peroxiredoxin; PFAM: AhpC/TSA family
YP_004344488.1	COGs: COG0468 RecA/RadA recombinase; HAMAP: DNA recombination and repair protein RecA; InterPro IPR013765:IPR003593; KEGG: fps:FP2245 recombinase A; PFAM: DNA recombination and repair protein RecA; SMART: ATPase, AAA+ type, core; SPTR: Protein recA; TIGRFAM: DNA recombination and repair protein RecA; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_004344489.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR013527:IPR013551; KEGG: bvu:BVU_1645 hypothetical protein; PFAM: YicC-like, N-terminal; Domain of unknown function DUF1732; SPTR:  uncharacterized protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_004344490.1	COGs: COG0194 Guanylate kinase; HAMAP: Guanylate kinase, sub-group; InterPro IPR008144:IPR017665:IPR008145; KEGG: fbc:FB2170_04940 guanylate kinase; PFAM: Guanylate kinase; PRIAM: Guanylate kinase; SMART: Guanylate kinase/L-type calcium channel; SPTR: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_004344491.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; InterPro IPR004820:IPR004821:IPR005248; KEGG: fjo:Fjoh_0744 nicotinic acid mononucleotide adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_004344492.1	KEGG: phe:Phep_0322 hypothetical protein; SPTR:  uncharacterized protein
YP_004344493.1	COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR000330:IPR001650:IPR014001; KEGG: dfe:Dfer_0265 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Non-specific serine/threonine protein kinase; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_004344494.1	KEGG: afw:Anae109_2953 GtrA family protein; SPTR:  uncharacterized protein
YP_004344495.1	KEGG: chu:CHU_2682 hypothetical protein; SPTR:  uncharacterized protein
YP_004344496.1	COGs: COG3893 Inactivated superfamily I helicase; KEGG: fbc:FB2170_06515 hypothetical protein; SPTR:  uncharacterized protein
YP_004344497.1	KEGG: chu:CHU_3455 hypothetical protein; SPTR:  uncharacterized protein
YP_004344498.1	KEGG: rbi:RB2501_10432 outer membrane protein OmpA; SPTR: Outer membrane protein OmpA
YP_004344499.1	KEGG: fal:FRAAL2965  glycine-rich protein; SPTR:  uncharacterized protein
YP_004344500.1	KEGG: fbc:FB2170_01871 OmpA/MotB; SPTR: OmpA/MotB
YP_004344501.1	KEGG: mru:mru_2133 hypothetical protein; SPTR:  uncharacterized protein
YP_004344502.1	KEGG: chu:CHU_2552 hypothetical protein; SPTR:  uncharacterized protein
YP_004344503.1	InterPro IPR008160; KEGG: bld:BLi00801 hypothetical protein; PFAM: Collagen triple helix repeat; SPTR: Collagen triple helix repeat protein; PFAM: Collagen triple helix repeat (20 copies)
YP_004344504.1	KEGG: fba:FIC_00688 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3109)
YP_004344505.1	COGs: COG0637 phosphatase/phosphohexomutase; InterPro IPR005834:IPR006402:IPR006439; KEGG: shw:Sputw3181_0533 2-deoxyglucose-6-phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004344506.1	KEGG: fbc:FB2170_08119 hypothetical protein; SPTR:  uncharacterized protein
YP_004344507.1	COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); InterPro IPR004981; KEGG: phe:Phep_0260 tryptophan 2 3-dioxygenase (vermilion); PFAM: Tryptophan 2,3-dioxygenase; SPTR: Tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase
YP_004344508.1	KEGG: fjo:Fjoh_0730 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_004344509.1	COGs: COG3487 Uncharacterized iron-regulated protein; InterPro IPR018976; KEGG: fps:FP1478 lipoprotein precursor; PFAM: Peptidase M75, Imelysin; SPTR:  uncharacterized protein; PFAM: Imelysin
YP_004344510.1	COGs: COG3488 thiol oxidoreductase; InterPro IPR010538; KEGG: fps:FP1477 hypothetical protein; PFAM: Protein of unknown function DUF1111; SPTR: Thiol oxidoreductase; PFAM: Protein of unknown function (DUF1111)
YP_004344511.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_1561 OmpA family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein, OmpA family; PFAM: OmpA family
YP_004344512.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209:IPR000601; KEGG: mar:MAE_12400  peptidase; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; PKD; PRIAM: Thermitase; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain; Subtilase
YP_004344513.1	COGs: COG4291 membrane protein; InterPro IPR009781; KEGG: cpi:Cpin_0067 protein of unknown function DUF1345; PFAM: Protein of unknown function DUF1345; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1345)
YP_004344514.1	KEGG: tet:TTHERM_00717640 ABC transporter family protein; SPTR:  uncharacterized protein
YP_004344515.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: cpi:Cpin_7103 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004344516.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623:IPR002939; KEGG: sli:Slin_5708 chaperone DnaJ domain protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Chaperone DnaJ domain protein; PFAM: DnaJ domain; DnaJ C terminal region
YP_004344517.1	KEGG: phe:Phep_2675 hypothetical protein; SPTR:  uncharacterized protein
YP_004344518.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dfe:Dfer_0952 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase
YP_004344519.1	InterPro IPR018534; KEGG: bth:BT_0110  regulatory protein; PFAM: Tetracycline regulation of excision, RteC; SPTR: Tetracycline resistance element mobilization regulatory protein RteC; PFAM: RteC protein
YP_004344520.1	KEGG: fps:FP1539 hypothetical protein; SPTR:  uncharacterized protein
YP_004344521.1	KEGG: fps:FP1571 hypothetical protein; SPTR:  uncharacterized protein
YP_004344522.1	KEGG: fps:FP2296 hypothetical protein; SPTR:  uncharacterized protein
YP_004344523.1	KEGG: pap:PSPA7_5558 Sel1; SPTR:  uncharacterized protein
YP_004344524.1	COGs: COG2378 transcriptional regulator protein; KEGG: rbi:RB2501_07125 hypothetical protein; SPTR:  uncharacterized protein
YP_004344525.1	InterPro IPR003356; KEGG: rbi:RB2501_07120 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004344526.1	KEGG: cbt:CLH_0034 hydrogenase-1; SPTR:  uncharacterized protein
YP_004344527.1	COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: deb:DehaBAV1_1045 hypothetical protein; PFAM: Protein of unknown function DUF2130; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2130)
YP_004344528.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: cbh:CLC_0732  type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; SPTR: Type I restriction modification system M subunit (Site-specific DNA-methyltransferase subunit); PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_004344529.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: cyh:Cyan8802_0727 restriction modification system DNA specificity domain protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Restriction modification system DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain
YP_004344530.1	KEGG: tet:TTHERM_00122370 cation channel family protein; SPTR: Cation channel family protein
YP_004344531.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR007421; KEGG: gur:Gura_4300  transcriptional regulator; PFAM: ATPase, AAA-4; SPTR: ATP-dependent DNA helicase RecG-related protein; PFAM: Divergent AAA domain
YP_004344532.1	KEGG: cpi:Cpin_3249 hypothetical protein; SPTR:  uncharacterized protein
YP_004344533.1	KEGG: rec:RHECIAT_CH0003240 hypothetical protein; SPTR: Hypothetical conserved protein
YP_004344534.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR006935:IPR001650:IPR014001; KEGG: rba:RB11622 type I restriction enzyme, R protein; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I restriction enzyme, R protein; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Domain of unknown function (DUF3559); Type III restriction enzyme, res subunit
YP_004344535.1	COGs: COG0708 Exonuclease III; InterPro IPR005135; KEGG: rru:Rru_A2021 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase
YP_004344536.1	KEGG: fps:FP2320 hypothetical protein; SPTR:  uncharacterized protein
YP_004344537.1	KEGG: zma:100275111 hypothetical protein LOC100275111; SPTR:  uncharacterized protein
YP_004344538.1	KEGG: chu:CHU_1187 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3040)
YP_004344539.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004344540.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR:  uncharacterized protein
YP_004344541.1	COGs: COG0252 L-asparaginase/ Glu-tRNAGln amidotransferase subunit D; InterPro IPR006034:IPR006033; KEGG: coc:Coch_0263 L-asparaginase, type I; PFAM: Asparaginase/glutaminase; PRIAM: 1-alkyl-2-acetylglycerophosphocholine esterase; SPTR: L-asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I
YP_004344542.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130:IPR015991; KEGG: cpi:Cpin_0246 hydrolase, TatD family; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_004344543.1	InterPro IPR009474; KEGG: dfe:Dfer_5785 protein of unknown function DUF1094; PFAM: Uncharacterised protein family UPF0403; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1094)
YP_004344544.1	SPTR: Two-component system sensor histidine kinase/response
YP_004344545.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; InterPro IPR001228; KEGG: bfs:BF3735 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_004344546.1	KEGG: chu:CHU_0744 CHU large protein; SPTR: CHU large protein
YP_004344547.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: chu:CHU_1700 cation efflux system protein; PFAM: Cation efflux protein; SPTR: Possible cation efflux system protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004344548.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: rbi:RB2501_02670 linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Linoleoyl-CoA desaturase; PFAM: Fatty acid desaturase
YP_004344549.1	COGs: COG0193 Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; InterPro IPR001328; KEGG: zpr:ZPR_0450 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_004344550.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro IPR003329:IPR004528; KEGG: phe:Phep_2582 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_004344551.1	COGs: COG0597 Lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; InterPro IPR001872; KEGG: pru:PRU_1067  lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; SPTR:  signal peptidase; manually curated; PFAM: Signal peptidase (SPase) II
YP_004344552.1	KEGG: rbi:RB2501_07805  regulatory protein; SPTR:  regulatory protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger
YP_004344553.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); HAMAP: Ribosomal RNA adenine dimethylase; InterPro IPR001737:IPR011530:IPR020598; KEGG: zpr:ZPR_0457 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; SPTR: Dimethyladenosine transferase; TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_004344554.1	KEGG: rbi:RB2501_05005 hypothetical protein; SPTR:  uncharacterized protein
YP_004344555.1	InterPro IPR003367; KEGG: dol:Dole_0490 pyrrolo-quinoline quinone; SPTR: Pyrrolo-quinoline quinone; PFAM: Protein metal binding site
YP_004344556.1	COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: fps:FP2383 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_004344557.1	InterPro IPR007016; KEGG: chu:CHU_2177 ExoQ family/lipid A core O-antigen ligase; PFAM: O-antigen ligase-related; SPTR: Membrane protein of EXOQ family/lipid A core-O-antigen ligase; PFAM: O-Antigen ligase
YP_004344558.1	InterPro IPR003856; KEGG: chu:CHU_2178 hypothetical protein; PFAM: Lipopolysaccharide biosynthesis; SPTR:  uncharacterized protein; PFAM: Chain length determinant protein
YP_004344559.1	COGs: COG3781 membrane protein; KEGG: fjo:Fjoh_2942 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Bestrophin
YP_004344560.1	KEGG: fps:FP2305 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Salmonella virulence plasmid 65kDa B protein
YP_004344561.1	InterPro IPR006530; KEGG: phe:Phep_1098 hypothetical protein; PFAM: YD repeat; SPTR:  uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; YD repeat; TIGRFAM: RHS repeat-associated core domain
YP_004344562.1	KEGG: pcb:PC300272.00.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344564.1	KEGG: ddi:DDB_G0270584 hypothetical protein
YP_004344565.1	KEGG: fjo:Fjoh_0501 hypothetical protein; SPTR:  uncharacterized protein
YP_004344566.1	KEGG: dae:Dtox_2868 YD repeat protein; SPTR:  uncharacterized protein; TIGRFAM: RHS repeat-associated core domain; TIGRFAM: RHS repeat-associated core domain
YP_004344567.1	KEGG: mcd:MCRO_0297  lipoprotein; SPTR:  lipoprotein
YP_004344568.1	COGs: COG0481 Membrane GTPase LepA; HAMAP: GTP-binding protein LepA; InterProIPR000795:IPR004161:IPR000640:IPR013842:IPR 005225:IPR006297; KEGG: phe:Phep_2070 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_004344569.1	KEGG: cli:Clim_1537 OmpA/MotB domain protein; SPTR: OmpA/MotB; PFAM: OmpA family
YP_004344570.1	KEGG: cpi:Cpin_3636 hypothetical protein; SPTR: Alanyl-tRNA synthetase
YP_004344571.1	KEGG: fjo:Fjoh_2809 hypothetical protein; SPTR:  uncharacterized protein
YP_004344572.1	KEGG: fps:FP1887 hypothetical protein; SPTR:  uncharacterized protein
YP_004344573.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_3976 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004344574.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR001440:IPR010559:IPR003594:IPR019734; KEGG: cpi:Cpin_6624 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Tetratricopeptide TPR-1; ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase; Tetratricopeptide repeat
YP_004344575.1	KEGG: ngr:NAEGRDRAFT_71365 hypothetical protein; SPTR:  uncharacterized protein
YP_004344576.1	COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR015413:IPR002300:IPR013155:IPR002302; KEGG: fbc:FB2170_07704 leucyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; SPTR: Leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; tRNA synthetases class I (M); TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_004344577.1	KEGG: fjo:Fjoh_1849 hypothetical protein; SPTR:  uncharacterized protein
YP_004344578.1	COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: sli:Slin_0734 ferritin Dps family protein; PFAM: Ferritin/Dps protein; SPTR: Ferritin Dps family protein; PFAM: Ferritin-like domain
YP_004344579.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: phe:Phep_4211 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004344580.1	InterPro IPR013431; KEGG: cph:Cpha266_2319 FG-GAP repeat-containing protein; SPTR: FG-GAP repeat protein; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004344581.1	InterPro IPR013431; KEGG: bba:Bd3250 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004344582.1	KEGG: saz:Sama_1563 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; SPTR: 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_004344583.1	KEGG: swd:Swoo_0694 hypothetical protein; SPTR:  uncharacterized protein
YP_004344584.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004344585.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR010559; KEGG: cpi:Cpin_5951 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator propeller; SPTR: Histidine kinase; PFAM: Histidine kinase; Two component regulator propeller
YP_004344586.1	COGs: COG2852 conserved hypothetical protein; KEGG: syp:SYNPCC7002_F0021 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF559)
YP_004344587.1	InterPro IPR003088; KEGG: chu:CHU_2573 hypothetical protein; PFAM: Cytochrome c, class I; SPTR: Ribonuclease Z
YP_004344588.1	InterPro IPR007627:IPR014284; KEGG: phe:Phep_2931 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-E factor; heat shock and oxidative stress; TIGRFAM: RNA polymerase sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344589.1	InterPro IPR007159; KEGG: upa:UPA3_0030 hypothetical protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR:  uncharacterized protein; PFAM: SpoVT / AbrB like domain
YP_004344590.1	COGs: COG2337 Growth inhibitor; InterPro IPR003477; KEGG: cyc:PCC7424_5889 transcriptional modulator of MazE/toxin, MazF; PFAM: PemK-like protein; SPTR: Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK-like protein
YP_004344591.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701:IPR004638; KEGG: sli:Slin_4411 drug resistance transporter, EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; SPTR: Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_004344592.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: sli:Slin_2691 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD family protein; PFAM: HlyD family secretion protein
YP_004344593.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_2915 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004344594.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: cpi:Cpin_2914 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004344595.1	COGs: COG1979 Uncharacterized oxidoreductase Fe-dependent alcohol dehydrogenase; InterPro IPR001670; KEGG: fps:FP0142 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; PRIAM: Alcohol dehydrogenase (NADP(+)); SPTR: Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_004344596.1	KEGG: chu:CHU_1903 hypothetical protein; SPTR:  uncharacterized protein
YP_004344597.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; InterPro IPR005475:IPR005476:IPR005477; KEGG: phe:Phep_3860 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: Deoxyxylulose-5-phosphate synthase; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_004344598.1	KEGG: tan:TA11015 hypothetical protein; SPTR:  uncharacterized protein
YP_004344599.1	KEGG: mcp:MCAP_0862 hypothetical protein; SPTR: Membrane protein
YP_004344600.1	COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); KEGG: cpf:CPF_1910 metallo-beta-lactamase; SPTR: Probable late competence protein
YP_004344601.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: ant:Arnit_1020 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: Auxin efflux carrier; PFAM: Membrane transport protein
YP_004344602.1	COGs: COG0017 Aspartyl/asparaginyl-tRNA synthetase; HAMAP: Asparaginyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR004522; KEGG: zpr:ZPR_4536 asparaginyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; PRIAM: Asparagine--tRNA ligase; SPTR: Asparaginyl-tRNA synthetase; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_004344603.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394:IPR007046:IPR007634; KEGG: cpi:Cpin_0852 RNA polymerase, sigma 54 subunit, RpoN; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; SPTR: RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_004344604.1	KEGG: bvu:BVU_1418 hypothetical protein; SPTR:  uncharacterized protein; PFAM: PAP2 superfamily
YP_004344605.1	KEGG: bpo:BP951000_0302 hypothetical protein; SPTR:  uncharacterized protein
YP_004344606.1	InterPro IPR000601:IPR002884; KEGG: cat:CA2559_00775 iron-regulated protein FrpC; PFAM: PKD; Proprotein convertase, P; SMART: PKD; SPTR: Iron-regulated protein FrpC; PFAM: PKD domain
YP_004344607.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: cpi:Cpin_0418 beta-lactamase domain protein; SPTR: Metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily
YP_004344608.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR019734; KEGG: phe:Phep_2961 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR:  uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004344609.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_2907 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004344610.1	KEGG: ter:Tery_3964 hypothetical protein; SPTR: Cell surface protein, ; PFAM: Beta-propeller repeat
YP_004344611.1	KEGG: sil:SPO0844 hypothetical protein; SPTR:  uncharacterized protein
YP_004344612.1	KEGG: cch:Cag_2020 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF88
YP_004344613.1	COGs: COG1160 GTPase; HAMAP: GTP-binding, EngA; InterPro IPR002917:IPR005225:IPR016484:IPR003577; KEGG: fps:FP1961 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; SMART: Ras small GTPase, Ras type; SPTR: GTP-binding protein engA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_004344614.1	COGs: COG1159 GTPase; HAMAP: GTP-binding protein Era; InterPro IPR002917:IPR004044:IPR005225:IPR005662; KEGG: coc:Coch_0214 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTPase of unknown function; KH domain; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_004344615.1	COGs: COG4682 membrane protein; InterPro IPR008024; KEGG: chu:CHU_3527 hypothetical protein; PFAM: YiaAB two helix; SPTR: Membrane protein; PFAM: yiaA/B two helix domain
YP_004344616.1	COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: lil:LA_2450 hypothetical protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SMART: Leucine-rich repeat, typical subtype; SPTR: Miro-like protein; PFAM: Leucine Rich Repeat
YP_004344617.1	COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR001611:IPR003591; KEGG: lil:LA_2450 hypothetical protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SPTR:  uncharacterized protein; PFAM: Leucine Rich Repeat
YP_004344618.1	COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: chu:CHU_1290 integral membrane protein; PFAM: Protein of unknown function DUF125, transmembrane; SPTR: Integral membrane protein; PFAM: VIT family
YP_004344619.1	KEGG: fps:FP0961 hypothetical protein; SPTR:  uncharacterized protein
YP_004344620.1	KEGG: lba:Lebu_2205 hypothetical protein; SPTR: MORN repeat variant protein
YP_004344621.1	KEGG: pbe:PB000891.00.0 pf52 protein; SPTR: Pf52 protein
YP_004344622.1	KEGG: vpo:Kpol_1035p50 hypothetical protein; SPTR:  uncharacterized protein
YP_004344624.1	KEGG: llo:LLO_0672 phospholipase; SPTR: Phospholipase
YP_004344625.1	KEGG: fjo:Fjoh_0434 hypothetical protein; SPTR:  uncharacterized protein
YP_004344626.1	KEGG: zpr:ZPR_0081 hypothetical protein; SPTR:  uncharacterized protein
YP_004344627.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fjo:Fjoh_0071 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344628.1	KEGG: slo:Shew_3406 secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein
YP_004344629.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153:IPR006037; KEGG: phe:Phep_3551 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Na+/H+ antiporter; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain; TC 2.A.37
YP_004344630.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: fps:FP1969 glycine/D-amino acid oxidases (deaminating) family protein; PFAM: FAD dependent oxidoreductase; SPTR: Glycine/D-amino acid oxidases (Deaminating) family protein; PFAM: FAD dependent oxidoreductase
YP_004344631.1	COGs: COG3752 membrane protein; InterPro IPR010721; KEGG: acl:ACL_1249 integral membrane protein; PFAM: Protein of unknown function DUF1295; SPTR: Integral membrane protein; PFAM: Protein of unknown function (DUF1295)
YP_004344632.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: bvu:BVU_0861  amidophosphoribosyl-transferase; PFAM: Phosphoribosyltransferase; SPTR: Predicted amidophosphoribosyl-transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_004344633.1	COGs: COG0208 Ribonucleotide reductase beta subunit; InterPro IPR000358; KEGG: aas:Aasi_0535 hypothetical protein; PFAM: Ribonucleotide reductase; PRIAM: Ribonucleoside-diphosphate reductase; SPTR:  uncharacterized protein; PFAM: Ribonucleotide reductase, small chain
YP_004344634.1	InterPro IPR005144:IPR013509:IPR000788:IPR013346; KEGG: chu:CHU_0451 ribonucleoside diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_004344636.1	KEGG: cpi:Cpin_6785 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Suppressor of fused protein (SUFU)
YP_004344637.1	InterPro IPR003368; KEGG: fjo:Fjoh_2687 hypothetical protein; PFAM: Polymorphic membrane protein, Chlamydia; SPTR: Conserved repeat domain protein; TIGRFAM: Polymorphic membrane protein, Chlamydia; TIGRFAM: Chlamydial polymorphic outer membrane protein repeat
YP_004344638.1	KEGG: fjo:Fjoh_0539 hypothetical protein; SPTR:  uncharacterized protein
YP_004344639.1	KEGG: fnu:FN2119 hypothetical protein; SPTR:  phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
YP_004344640.1	KEGG: abo:ABO_2516 hypothetical protein; SPTR:  uncharacterized protein
YP_004344641.1	KEGG: abo:ABO_2516 hypothetical protein; SPTR:  uncharacterized protein
YP_004344642.1	KEGG: pph:Ppha_2580 TonB-dependent receptor; SPTR: Glycosyl hydrolase, BNR repeat
YP_004344643.1	KEGG: pph:Ppha_2580 TonB-dependent receptor; SPTR: Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein
YP_004344644.1	KEGG: phe:Phep_0830 TonB-dependent receptor; SPTR:  TonB dependent receptor
YP_004344645.1	KEGG: plt:Plut_0256 ferric siderophore receptor; SPTR: Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein
YP_004344646.1	KEGG: phe:Phep_0830 TonB-dependent receptor; SPTR:  TonB dependent receptor
YP_004344647.1	KEGG: fps:FP0285 hypothetical protein; SPTR: PGAP1-like protein
YP_004344648.1	KEGG: phe:Phep_1054 hypothetical protein; SPTR:  uncharacterized protein
YP_004344649.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: cpi:Cpin_1418 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; PRIAM: Membrane alanyl aminopeptidase; SPTR: Peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1
YP_004344650.1	COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089; KEGG: sli:Slin_2390 biotin/lipoyl attachment domain-containing protein; PFAM: Biotin/lipoyl attachment; SPTR: Biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme
YP_004344651.1	KEGG: sli:Slin_5074 hypothetical protein; SPTR:  uncharacterized protein
YP_004344652.1	KEGG: pgi:PG2173 outer membrane lipoprotein Omp28; SPTR: 28 kDa outer membrane protein Omp28; PFAM: Outer membrane protein Omp28
YP_004344653.1	KEGG: pgn:PGN_0121 hypothetical protein; SPTR:  uncharacterized protein
YP_004344654.1	InterPro IPR000866; KEGG: pgn:PGN_0120 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Antioxidant, AhpC/TSA family; PFAM: Redoxin
YP_004344655.1	KEGG: tme:Tmel_1366 metal dependent phosphohydrolase; SPTR: ODV-EC27
YP_004344656.1	KEGG: cpi:Cpin_4197 peptidase domain protein; SPTR:  uncharacterized protein
YP_004344657.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: abc:ACICU_01577 Sir2 family NAD-dependent protein deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR:  uncharacterized protein; PFAM: Sir2 family
YP_004344658.1	InterPro IPR000866; KEGG: cat:CA2559_01750 hypothetical protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Lysyl endopeptidase; PFAM: AhpC/TSA family
YP_004344659.1	COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: cpi:Cpin_1209 oxaloacetate-decarboxylating malate dehydrogenase (NADP(+)) phosphate acetyltransferase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: Oxaloacetate-decarboxylating malate dehydrogenase (NADP(+)) phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase
YP_004344660.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; HAMAP: Bacterial DNA recombination protein RuvA; InterPro IPR003583:IPR013849:IPR011114:IPR000085; KEGG: fbc:FB2170_03025 Holliday junction DNA helicase motor protein; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_004344661.1	KEGG: pdi:BDI_2659 hypothetical protein; SPTR:  uncharacterized protein
YP_004344662.1	InterPro IPR000182; KEGG: cpi:Cpin_6953 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Diamine acetyltransferase 2 (Spermidine/spermine N(1)-acetyltransferase 2); PFAM: Acetyltransferase (GNAT) family
YP_004344663.1	KEGG: sli:Slin_0996 hypothetical protein; SPTR:  uncharacterized protein
YP_004344664.1	COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; HAMAP: Phosphoribosylformylglycinamidine synthase I; InterPro IPR011698:IPR010075; KEGG: sli:Slin_6348 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase I; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I
YP_004344665.1	COGs: COG0151 Phosphoribosylamine-glycine ligase; HAMAP: Phosphoribosylglycinamide synthetase; InterPro IPR020562:IPR020561:IPR020560:IPR000115; KEGG: fjo:Fjoh_1041 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR:  uncharacterized protein; TIGRFAM: Phosphoribosylglycinamide synthetase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_004344666.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: bvu:BVU_2561 CBS domain-containing protein; PFAM: Transporter-associated domain; Protein of unknown function DUF21; Cystathionine beta-synthase, core; SPTR:  transmembrane CBS domain transporter; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_004344667.1	COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: lwe:lwe1300 aldose epimerase; PFAM: Aldose 1-epimerase; SPTR: Complete genome; PFAM: Aldose 1-epimerase
YP_004344668.1	KEGG: cpi:Cpin_2510 hypothetical protein; SPTR:  uncharacterized protein
YP_004344669.1	KEGG: fba:FIC_00910 hypothetical protein; SPTR:  uncharacterized protein
YP_004344670.1	KEGG: cha:CHAB381_1452 hypothetical protein; SPTR:  uncharacterized protein
YP_004344671.1	KEGG: tet:TTHERM_00763040 MutS domain V family protein; SPTR:  uncharacterized protein
YP_004344672.1	KEGG: lsa:LSA1176 hypothetical protein; SPTR:  uncharacterized protein
YP_004344673.1	KEGG: osa:4348605 hypothetical protein; SPTR: Calmodulin-binding family protein, , expressed
YP_004344674.1	KEGG: sae:NWMN_2053 SAP domain-containing protein; SPTR: SAP domain protein
YP_004344675.1	KEGG: tet:TTHERM_01044720 MORN domain repeat containing protein; SPTR: MORN domain repeat containing protein
YP_004344676.1	KEGG: tvo:TVN1212 hypothetical protein; SPTR:  outer membrane protein, probably involved in nutrient binding
YP_004344677.1	KEGG: geo:Geob_1580 hypothetical protein; SPTR:  uncharacterized protein
YP_004344678.1	KEGG: lsa:LSA1176 hypothetical protein; SPTR:  uncharacterized protein
YP_004344679.1	KEGG: osa:4348605 hypothetical protein; SPTR: Alpha-glucosidase
YP_004344680.1	KEGG: pcb:PC000651.04.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344681.1	KEGG: ngr:NAEGRDRAFT_70558 hypothetical protein; SPTR: Predicted protein
YP_004344682.1	KEGG: nam:NAMH_1041 probable inorganic polyphosphate/ATP-NAD kinase (poly(P)/ATP NAD kinase); SPTR: Predicted protein
YP_004344683.1	KEGG: osa:4348605 hypothetical protein; SPTR: Alpha-glucosidase
YP_004344684.1	KEGG: sae:NWMN_2053 SAP domain-containing protein; SPTR: SAP domain protein
YP_004344685.1	KEGG: tet:TTHERM_01044720 MORN domain repeat containing protein; SPTR: MORN domain repeat containing protein
YP_004344686.1	KEGG: ddi:DDB_G0280299 hypothetical protein; SPTR:  uncharacterized protein
YP_004344687.1	KEGG: fsu:Fisuc_1109 VacB and RNase II family 3'-5' exoribonuclease; SPTR: VacB and RNase II family 3'-5' exoribonuclease
YP_004344688.1	KEGG: lsa:LSA1176 hypothetical protein; SPTR:  uncharacterized protein
YP_004344689.1	KEGG: vvy:VVA1154 hypothetical protein; SPTR: Predicted Zn-dependent hydrolase of the beta-lactamase fold
YP_004344690.1	HAMAP: Uncharacterised protein family UPF0090, bacteria; InterPro IPR003728:IPR020790; KEGG: zpr:ZPR_0573 hypothetical protein; PFAM: Uncharacterised protein family UPF0090; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_004344691.1	COGs: COG0195 Transcription elongation factor; InterPro IPR013735:IPR010213; KEGG: phe:Phep_0140 transcription elongation factor NusA; PFAM: Transcription factor NusA, N-terminal; SPTR: Transcription termination factor NusA; TIGRFAM: Transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA
YP_004344692.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterProIPR006847:IPR000795:IPR004161:IPR000178:IPR 005225; KEGG: phe:Phep_0141 translation initiation factor IF-2; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; SPTR: Translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_004344693.1	KEGG: pjd:Pjdr2_3703 binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component
YP_004344694.1	KEGG: tdn:Suden_0151 CDP-alcohol phosphatidyltransferase; SPTR: Probable CDP-alcohol phosphatidyltransferase
YP_004344695.1	COGs: COG0450 Peroxiredoxin; InterPro IPR000866:IPR019479; KEGG: chu:CHU_3466 peroxiredoxin; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; PRIAM: Peroxidase; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004344696.1	KEGG: ter:Tery_3964 hypothetical protein; SPTR:  uncharacterized protein
YP_004344697.1	KEGG: fps:FP1737 hypothetical protein; SPTR:  uncharacterized protein; PFAM: LETM1-like protein
YP_004344698.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: cpi:Cpin_4185 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004344699.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_2093  transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR:  transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_004344700.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: fps:FP0296 outer membrane efflux protein precursor; PFAM: Outer membrane efflux protein; SPTR: ABC superfamily ATP binding cassette transporter membrane protein; PFAM: Outer membrane efflux protein
YP_004344701.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: fps:FP0295 ABC transporter membrane fusion efflux protein; PFAM: Secretion protein HlyD; SPTR: ABC superfamily ATP binding cassette transporter membrane protein; PFAM: HlyD family secretion protein
YP_004344702.1	InterPro IPR013525; KEGG: fps:FP0294 ABC transporter permease; PFAM: ABC-2 type transporter; SPTR: ABC superfamily ATP binding cassette transporter permease; PFAM: ABC-2 type transporter
YP_004344703.1	COGs: COG2342 extracellular endo alpha-1 4 polygalactosaminidase or related polysaccharide hydrolase; InterPro IPR004352; KEGG: fbc:FB2170_04690 hypothetical protein; PFAM: TM1410 hypothetical-related protein; SPTR:  uncharacterized protein; PFAM: TM1410 hypothetical-related protein
YP_004344704.1	KEGG: pfh:PFHG_01476 erythrocyte membrane-associated antigen; SPTR:  uncharacterized protein
YP_004344705.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0928 A-glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: A-glycosyltransferase, glycosyltransferase 4 protein; manually curated; PFAM: Glycosyl transferases group 1
YP_004344706.1	KEGG: lba:Lebu_1644 hypothetical protein; SPTR:  uncharacterized protein
YP_004344707.1	InterPro IPR006342; KEGG: rlt:Rleg2_2673 methyltransferase FkbM family; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; TIGRFAM: methyltransferase, FkbM family
YP_004344708.1	InterPro IPR002797; KEGG: chu:CHU_2176 exporter of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein; SPTR:  uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_004344709.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR001509:IPR005886; KEGG: dfe:Dfer_2894 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucose 4-epimerase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: UDP-glucose-4-epimerase
YP_004344710.1	KEGG: fps:FP0380 hypothetical protein; SPTR:  uncharacterized protein
YP_004344711.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR007221; KEGG: rbi:RB2501_08935 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_004344712.1	KEGG: cpi:Cpin_0192 rod shape-determining protein MreD; SPTR: Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD
YP_004344713.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790; KEGG: chu:CHU_3305 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_004344714.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: phe:Phep_0804 rod shape-determining protein RodA; PFAM: Cell cycle protein; SPTR:  uncharacterized protein; PFAM: Cell cycle protein
YP_004344715.1	InterPro IPR019619; KEGG: fbc:FB2170_11476 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004344716.1	KEGG: cbt:CLH_0781 flagellar cap protein FliD; SPTR:  uncharacterized protein
YP_004344717.1	InterPro IPR014867:IPR003367; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I; PFAM: Spore coat protein CotH; Thrombospondin, type 3-like repeat; SPTR: Cellulosome enzyme, dockerin type I; PFAM: CotH protein
YP_004344718.1	InterPro IPR019861; KEGG: cpi:Cpin_6900 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004344719.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR013982:IPR011607; KEGG: fjo:Fjoh_1459 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; MGS-like; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; SPTR: Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_004344720.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: phe:Phep_0808 rod shape-determining protein MreB; PFAM: Cell shape determining protein MreB/Mrl; SPTR: Cell shape determining protein, MreB/Mrl family; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_004344721.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: rbi:RB2501_05810  transmembrane protein; PFAM: Multiple antibiotic resistance (MarC)-related; SPTR: Multiple antibiotic resistance (MarC)-related protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004344722.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR002376; KEGG: zpr:ZPR_0277 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; PRIAM: Phosphoribosylglycinamide formyltransferase; SPTR:  uncharacterized protein; PFAM: Formyl transferase
YP_004344723.1	COGs: COG0236 Acyl carrier protein; HAMAP: Acyl carrier protein (ACP); InterPro IPR006163:IPR003231; KEGG: bth:BT_3359 acyl carrier protein; PFAM: Phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: Acyl carrier protein (ACP); PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004344724.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: phe:Phep_4193 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_004344725.1	COGs: COG0571 dsRNA-specific ribonuclease; HAMAP: Ribonuclease III, bacterial; InterPro IPR000999:IPR001159:IPR011907; KEGG: bvu:BVU_1049  ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA binding; PRIAM: Ribonuclease III; SMART: Ribonuclease III; Double-stranded RNA binding; SPTR: Ribonuclease III; TIGRFAM: Ribonuclease III, bacterial; PFAM: Double-stranded RNA binding motif; RNase3 domain; TIGRFAM: ribonuclease III, bacterial
YP_004344726.1	KEGG: cpi:Cpin_2510 hypothetical protein; SPTR:  uncharacterized protein
YP_004344727.1	KEGG: dfe:Dfer_5291 hypothetical protein; SPTR:  uncharacterized protein
YP_004344728.1	KEGG: dwi:Dwil_GK14699 GK14699 gene product from transcript GK14699-RA; SPTR: ABC transporter, substrate-binding protein
YP_004344729.1	KEGG: hmg:100201306 similar to Golgin subfamily B member 1; SPTR:  uncharacterized protein
YP_004344730.1	KEGG: pfh:PFHG_03971 conserved hypothetical protein; SPTR: ABC transporter, substrate-binding protein
YP_004344731.1	KEGG: rlg:Rleg_4093 ammonium transporter; SPTR: Ammonium transporter
YP_004344733.1	KEGG: tet:TTHERM_00465050 cyclic nucleotide-binding domain containing protein; SPTR:  cardiolipin synthetase
YP_004344734.1	KEGG: zpr:ZPR_0281 hypothetical protein; SPTR:  uncharacterized protein
YP_004344735.1	COGs: COG0469 Pyruvate kinase; InterPro IPR015793:IPR015794:IPR001697; KEGG: phe:Phep_4190 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_004344736.1	KEGG: cpi:Cpin_0536 hypothetical protein; SPTR:  uncharacterized protein
YP_004344737.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: cpc:Cpar_1073 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Helicase-like:DEAD/DEAH box helicase-like; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004344738.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR000534:IPR012280:IPR005986; KEGG: gfo:GFO_3351 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_004344739.1	KEGG: cpi:Cpin_3365 hypothetical protein; SPTR:  uncharacterized protein
YP_004344740.1	COGs: COG2322 membrane protein; InterPro IPR007352; KEGG: fbc:FB2170_02965 hypothetical protein; PFAM: Protein of unknown function DUF420; SPTR: YozB; PFAM: Protein of unknown function (DUF420)
YP_004344741.1	COGs: COG1999 Uncharacterized protein SCO1/SenC/PrrC involved in biogenesis of respiratory and photosynthetic systems; InterPro IPR003782; KEGG: dfe:Dfer_5207 electron transport protein SCO1/SenC; PFAM: Copper chaperone SCO1/SenC; SPTR: Electron transport protein SCO1/SenC; PFAM: SCO1/SenC
YP_004344742.1	KEGG: sli:Slin_1301 electron transport protein SCO1/SenC; SPTR:  uncharacterized protein; PFAM: SCO1/SenC
YP_004344743.1	KEGG: rbi:RB2501_03580 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: caa(3)-type oxidase, subunit IV
YP_004344744.1	COGs: COG1845 Heme/copper-type cytochrome/quinol oxidase subunit 3; InterPro IPR000298; KEGG: fbc:FB2170_02985 cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase, subunit III; SPTR: Cytochrome c oxidase subunit III; PFAM: Cytochrome c oxidase subunit III
YP_004344745.1	KEGG: rbi:RB2501_03590 cytochrome o ubiquinol oxidase subunit III; SPTR:  uncharacterized protein; PFAM: Cytochrome c oxidase subunit III
YP_004344746.1	COGs: COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor); HAMAP: Protohaem IX farnesyltransferase; InterPro IPR000537:IPR006369; KEGG: chu:CHU_2204 polyprenyltransferase (cytochrome oxidase assembly factor); PFAM: UbiA prenyltransferase; SPTR: Protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase; TIGRFAM: protoheme IX farnesyltransferase
YP_004344747.1	KEGG: phe:Phep_3918 hypothetical protein; SPTR:  uncharacterized protein
YP_004344748.1	KEGG: fps:FP2117 hypothetical protein; SPTR:  uncharacterized protein
YP_004344749.1	COGs: COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase; InterPro IPR000760; KEGG: dol:Dole_2032 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase; SPTR: 3'(2'),5'-bisphosphate nucleotidase; PFAM: Inositol monophosphatase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial
YP_004344750.1	COGs: COG0274 Deoxyribose-phosphate aldolase; InterPro IPR002915:IPR011343; KEGG: scl:sce5008  deoxyribose-phosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PRIAM: Deoxyribose-phosphate aldolase; SPTR:  Deoxyribose-phosphate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; PFAM: DeoC/LacD family aldolase; TIGRFAM: deoxyribose-phosphate aldolase
YP_004344751.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: sru:SRU_1228 aldehyde dehydrogenase, mitochondrial precursor; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase
YP_004344752.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: scb:SCAB_34761  aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase
YP_004344753.1	KEGG: ago:AGOS_AFR479W hypothetical protein; SPTR: AFR479Wp
YP_004344755.1	KEGG: pkn:PKH_121410 hypothetical protein; SPTR: Pneumococcal surface protein A
YP_004344756.1	InterPro IPR000601; KEGG: fps:FP2310 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004344757.1	KEGG: btl:BALH_4171 DNA polymerase I; SPTR: DNA polymerase I
YP_004344758.1	COGs: COG0509 Glycine cleavage system H protein (lipoate-binding); HAMAP: Glycine cleavage H-protein; InterPro IPR002930:IPR017453; KEGG: fbc:FB2170_03015 glycine cleavage system protein H; PFAM: Glycine cleavage H-protein; SPTR: Glycine cleavage system H protein; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_004344759.1	COGs: COG1186 Protein chain release factor B; InterPro IPR005139:IPR000352:IPR004374; KEGG: fba:FIC_01629 peptide chain release factor 2; PFAM: Class I peptide chain release factor; Peptide chain release factor; SPTR: Peptide chain release factor RF2; TIGRFAM: Peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_004344760.1	COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR006659; KEGG: chu:CHU_1588 arsenate reductase (glutaredoxin); PFAM: Arsenate reductase-like; SPTR: ArsC family protein; TIGRFAM: Arsenate reductase; PFAM: ArsC family; TIGRFAM: arsenate reductase (glutaredoxin)
YP_004344761.1	KEGG: phe:Phep_2159 hypothetical protein; SPTR:  uncharacterized protein
YP_004344762.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: cat:CA2559_00525  arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR:  arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain
YP_004344763.1	KEGG: ecb:100052647 phosphoinositide-3-kinase, regulatory subunit 4; SPTR: PIK3R4 protein
YP_004344764.1	KEGG: zpr:ZPR_4595 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004344765.1	KEGG: cch:Cag_0529 hypothetical protein; SPTR:  uncharacterized protein; PFAM: DOMON domain
YP_004344766.1	COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: fps:FP1480 ankyrin repeat-containing protein; PFAM: Ankyrin repeat; SMART: Ankyrin repeat; SPTR: Ankyrin repeat-containing protein; PFAM: Ankyrin repeat
YP_004344767.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703; KEGG: phe:Phep_1478 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SPTR: ATPase associated with various cellular activities AAA_3; PFAM: ATPase associated with various cellular activities (AAA)
YP_004344768.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002035:IPR002881; KEGG: pru:PRU_0757 hypothetical protein; PFAM: Protein of unknown function DUF58; von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004344769.1	KEGG: phe:Phep_1480 hypothetical protein; SPTR:  uncharacterized protein
YP_004344770.1	COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: pdi:BDI_0948 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_004344771.1	InterPro IPR002035; KEGG: zpr:ZPR_0319 von Willebrand factor (vWA) type A domain-containing protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: BatB protein; PFAM: von Willebrand factor type A domain
YP_004344772.1	InterPro IPR019734:IPR001440; KEGG: phe:Phep_1483 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide repeat
YP_004344773.1	KEGG: pru:PRU_0761  BatD/BatE protein; SPTR:  BatD/BatE protein
YP_004344774.1	KEGG: gfo:GFO_1806 hypothetical protein; SPTR:  uncharacterized protein
YP_004344775.1	COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: bra:BRADO0348 hypothetical protein; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR:  uncharacterized protein; PFAM: Fasciclin domain
YP_004344776.1	InterPro IPR000601; KEGG: chu:CHU_2972 metalloprotease; PFAM: PKD; SPTR: Collagenase, ; PFAM: PKD domain; Pregnancy-associated plasma protein-A
YP_004344777.1	COGs: COG0261 Ribosomal protein L21; HAMAP: Ribosomal protein L21; InterPro IPR001787; KEGG: phe:Phep_1624 ribosomal protein L21; PFAM: Ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: Ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_004344778.1	COGs: COG0211 Ribosomal protein L27; HAMAP: Ribosomal protein L27; InterPro IPR001684; KEGG: chu:CHU_0454 50S ribosomal protein L27; PFAM: Ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: Ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_004344779.1	COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR015866:IPR002314:IPR002317; KEGG: coc:Coch_0734 seryl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; PRIAM: Serine--tRNA ligase; SPTR: Serine--tRNA ligase; TIGRFAM: Seryl-tRNA synthetase, class IIa; PFAM: tRNA synthetase class II core domain (G, H, P, S and T); Seryl-tRNA synthetase N-terminal domain; TIGRFAM: seryl-tRNA synthetase
YP_004344780.1	KEGG: tad:TRIADDRAFT_57283 hypothetical protein; SPTR:  uncharacterized protein
YP_004344781.1	InterPro IPR019734; KEGG: phe:Phep_0363 tetratricopeptide TPR_3; SPTR: Tetratricopeptide-like helical; PFAM: Tetratricopeptide repeat
YP_004344782.1	COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; InterPro IPR000440; KEGG: fps:FP2232 NADH dehydrogenase I, A subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004344783.1	COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; InterPro IPR006137:IPR006138; KEGG: fps:FP2231 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_004344784.1	COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR001268; KEGG: dfe:Dfer_4086 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; SPTR: NADH-quinone oxidoreductase; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_004344785.1	COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; InterPro IPR001135; KEGG: fba:FIC_01663 NADH-ubiquinone oxidoreductase chain D; PFAM: NADH-quinone oxidoreductase, subunit D; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit C/D; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit
YP_004344786.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: fba:FIC_01664 NADH-ubiquinone oxidoreductase chain E; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_004344787.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR011538:IPR019554:IPR019575:IPR011537; KEGG: phe:Phep_4077 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit
YP_004344788.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041:IPR019574; KEGG: chu:CHU_1376 NADH dehydrogenase I chain G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase I chain G; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
YP_004344789.1	COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR001694; KEGG: chu:CHU_1375 NADH dehydrogenase I chain H; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit H; PFAM: NADH dehydrogenase
YP_004344790.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); HAMAP: NADH-quinone oxidoreductase, chain I; InterPro IPR010226; KEGG: chu:CHU_1374 NADH dehydrogenase I chain I; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_004344791.1	COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: cpi:Cpin_7010 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; SPTR: NADH dehydrogenase I chain J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004344792.1	COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; InterPro IPR001133; KEGG: sli:Slin_5943 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; SPTR: NADH-quinone oxidoreductase subunit K; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_004344793.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516:IPR001750:IPR003945; KEGG: fba:FIC_01671 NADH-ubiquinone oxidoreductase chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L
YP_004344794.1	COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750:IPR010227; KEGG: phe:Phep_4070 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit M; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M
YP_004344795.1	COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; InterPro IPR001750:IPR010096; KEGG: fba:FIC_01673 NADH-ubiquinone oxidoreductase chain N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit N; TIGRFAM: NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_004344796.1	KEGG: chu:CHU_1738 hypothetical protein; SPTR:  uncharacterized protein
YP_004344797.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: cat:CA2559_12873 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; PFAM: Glycosyl transferase 2
YP_004344798.1	InterPro IPR011652; KEGG: fnu:FN1515 phophatidylinositol-4-phosphate 5-kinase; PFAM: MORN variant; SPTR: Hypothetical exported 24-amino acid repeat protein; PFAM: MORN repeat variant
YP_004344799.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cat:CA2559_04730  oxidoreductase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: L-threonine 3-dehydrogenase; SPTR: NAD-dependent epimerase/dehydratase, L-threonine dehydrogenase; PFAM: NAD dependent epimerase/dehydratase
YP_004344800.1	COGs: COG3508 Homogentisate 1 2-dioxygenase; InterPro IPR005708; KEGG: fbc:FB2170_03660 homogentisate 1,2-dioxygenase; PFAM: Homogentisate 1,2-dioxygenase; SPTR: Homogentisate 1,2-dioxygenase; PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase
YP_004344801.1	COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins; InterPro IPR004360:IPR005956; KEGG: fps:FP0226 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; PRIAM: 4-hydroxyphenylpyruvate dioxygenase; SPTR: 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase
YP_004344802.1	KEGG: phe:Phep_2190 hypothetical protein; SPTR:  uncharacterized protein
YP_004344803.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: pdi:BDI_2285  beta-lactamase; PFAM: Beta-lactamase-related; SPTR:  beta-lactamase; PFAM: Beta-lactamase
YP_004344804.1	COGs: COG0321 Lipoate-protein ligase B; HAMAP: Octanoyltransferase; InterPro IPR004143:IPR000544; KEGG: dfe:Dfer_3712 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; PRIAM: Lipoyl(octanoyl) transferase; SPTR: Octanoyltransferase; TIGRFAM: Octanoyltransferase; PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: lipoate-protein ligase B
YP_004344805.1	COGs: COG1696 membrane protein involved in D-alanine export; InterPro IPR004299; KEGG: coc:Coch_0376 membrane bound O-acyl transferase MBOAT family protein; PFAM: Membrane bound O-acyl transferase, MBOAT; SPTR: Membrane bound O-acyl transferase MBOAT family protein; PFAM: MBOAT family
YP_004344806.1	KEGG: fps:FP1905 hypothetical protein; SPTR: Lipoprotein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004344807.1	KEGG: coc:Coch_0377 hypothetical protein; SPTR:  uncharacterized protein
YP_004344808.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: phe:Phep_1443 protein of unknown function DUF255; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_004344809.1	COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: rbi:RB2501_11597 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_004344810.1	InterPro IPR000297; KEGG: phe:Phep_4026 PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Peptidylprolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain
YP_004344811.1	KEGG: chu:CHU_2253 hypothetical protein; SPTR:  uncharacterized protein
YP_004344812.1	InterPro IPR000757; KEGG: fno:Fnod_1600 glucan endo-1,3-beta-D-glucosidase; PFAM: Glycoside hydrolase, family 16; SPTR: Glucan endo-1,3-beta-D-glucosidase; PFAM: Glycosyl hydrolases family 16
YP_004344813.1	KEGG: fba:FIC_00971 glycosyl hydrolase, BNR repeat protein; SPTR: Cell surface protein
YP_004344814.1	KEGG: lic:LIC10611 hypothetical protein; SPTR:  uncharacterized protein
YP_004344815.1	InterPro IPR000757; KEGG: fno:Fnod_1600 glucan endo-1,3-beta-D-glucosidase; PFAM: Glycoside hydrolase, family 16; SPTR: Glucan endo-1,3-beta-D-glucosidase; PFAM: Glycosyl hydrolases family 16
YP_004344816.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130:IPR001179; KEGG: fps:FP1890 peptidyl-prolyl cis-trans isomerase PpiB; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Probable peptidyl-prolyl cis-trans isomerase PpiB; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_004344817.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: fbc:FB2170_02165 metallo-beta-lactamase superfamily protein; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004344818.1	KEGG: chu:CHU_0331 hypothetical protein; SPTR:  uncharacterized protein
YP_004344819.1	KEGG: chu:CHU_1070 hypothetical protein; SPTR:  uncharacterized protein
YP_004344820.1	COGs: COG0423 Glycyl-tRNA synthetase (class II); InterPro IPR002314:IPR004154:IPR002315; KEGG: pdi:BDI_3201 glycyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; SPTR: Glycine--tRNA ligase; TIGRFAM: Glycyl-tRNA synthetase, alpha2 dimer; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: glycyl-tRNA synthetase, dimeric type
YP_004344821.1	KEGG: ptm:GSPATT00019663001 hypothetical protein; SPTR: Chromosome undetermined scaffold_61, whole genome shotgun sequence
YP_004344822.1	KEGG: fbc:FB2170_01687 hypothetical protein; SPTR:  uncharacterized protein
YP_004344823.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594; KEGG: gfo:GFO_0460 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004344824.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fjo:Fjoh_0036 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Phosphoglyceromutase; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004344825.1	KEGG: bvi:Bcep1808_3675 hypothetical protein; SPTR:  uncharacterized protein
YP_004344826.1	KEGG: bvi:Bcep1808_3675 hypothetical protein; SPTR:  uncharacterized protein
YP_004344827.1	KEGG: dal:Dalk_3976 tail collar domain protein; SPTR: Tail Collar domain protein
YP_004344828.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR010259:IPR000209; KEGG: ckr:CKR_0634 hypothetical protein; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Proteinase inhibitor I9, subtilisin propeptide; PRIAM: Subtilisin; SPTR: Elastase; PFAM: Peptidase inhibitor I9; Subtilase
YP_004344830.1	KEGG: pin:Ping_2756 water stress/hypersensitive response protein; SPTR:  uncharacterized protein; PFAM: Late embryogenesis abundant protein
YP_004344831.1	COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650; KEGG: fjo:Fjoh_1360 peptidase dimerisation domain-containing protein; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Beta-Ala-His dipeptidase; SPTR: Peptidase subfamily M20A; peptidase dimerisation domain protein; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain
YP_004344832.1	KEGG: swo:Swol_0174 hypothetical protein; SPTR: PKD domain protein; PFAM: Calx-beta domain
YP_004344833.1	COGs: COG0696 Phosphoglyceromutase; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; InterPro IPR011258:IPR006124:IPR005995; KEGG: pdi:BDI_2656 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_004344834.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661:IPR003594; KEGG: cpi:Cpin_0674 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004344835.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR000583; KEGG: zpr:ZPR_0274 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; PRIAM: Amidophosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; PFAM: Glutamine amidotransferases class-II
YP_004344836.1	InterPro IPR000601; KEGG: dfe:Dfer_2684 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein; PFAM: PKD domain
YP_004344837.1	COGs: COG0621 2-methylthioadenine synthetase; InterProIPR006638:IPR013848:IPR007197:IPR002792:IPR 005839:IPR006467; KEGG: coc:Coch_1770 MiaB-like tRNA modifying enzyme; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR:  uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme; Methylthiotransferase; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family
YP_004344838.1	COGs: COG0295 Cytidine deaminase; InterPro IPR002125; KEGG: fbc:FB2170_17371 cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Cytidine deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_004344839.1	COGs: COG1703  periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129; KEGG: pdi:BDI_3744 arginine/ornithine transport system ATPase; PFAM: ArgK protein; SPTR: LAO/AO transport system ATPase; TIGRFAM: ArgK protein; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_004344840.1	COGs: COG2501 conserved hypothetical protein; KEGG: sua:Saut_1537 RNA-binding S4; SPTR:  S4 domain protein
YP_004344841.1	KEGG: chu:CHU_0763 hypothetical protein; SPTR:  uncharacterized protein
YP_004344842.1	InterPro IPR010329; KEGG: fjo:Fjoh_1221 3-hydroxyanthranilate 3,4-dioxygenase; PFAM: 3-hydroxyanthranilic acid dioxygenase; PRIAM: 3-hydroxyanthranilate 3,4-dioxygenase; SPTR: 3-hydroxyanthranilate 3, 4-dioxygenase; TIGRFAM: 3-hydroxyanthranilic acid dioxygenase; PFAM: 3-hydroxyanthranilic acid dioxygenase; TIGRFAM: 3-hydroxyanthranilate 3,4-dioxygenase
YP_004344843.1	KEGG: dfe:Dfer_5604 hypothetical protein; SPTR:  uncharacterized protein
YP_004344844.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: cat:CA2559_07435  short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR:  short-chain dehydrogenase/reductase; PFAM: short chain dehydrogenase
YP_004344845.1	InterPro IPR003644:IPR000601; KEGG: fps:FP1171 hypothetical protein; PFAM: PKD; Na-Ca exchanger/integrin-beta4; SMART: PKD; Na-Ca exchanger/integrin-beta4; SPTR: PKD domain protein; PFAM: Calx-beta domain; PKD domain
YP_004344846.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: fps:FP1139 lipid ABC transporter permease/ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004344847.1	COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: bvu:BVU_0874 ribosome-binding factor A; PFAM: Ribosome-binding factor A; SPTR:  uncharacterized protein; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_004344848.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pdi:BDI_3305 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR:  uncharacterized protein; manually curated; PFAM: Predicted permease
YP_004344849.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000014:IPR001932:IPR013767:IPR010822; KEGG: drm:Dred_1841 stage II sporulation E family protein; PFAM: Sporulation stage II, protein E C-terminal; PAS fold; SMART: Protein phosphatase 2C-related; PAS; SPTR: Serine/threonine protein kinases; TIGRFAM: PAS; PFAM: Y_Y_Y domain; Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box
YP_004344850.1	COGs: COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); InterPro IPR003135:IPR005875; KEGG: chu:CHU_3733 phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; PRIAM: Phosphoribosylaminoimidazole carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein
YP_004344851.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836:IPR005904; KEGG: sli:Slin_5350 hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: Hypoxanthine phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_004344852.1	COGs: COG0563 Adenylate kinase and related kinase; HAMAP: Adenylate kinase; InterPro IPR000850:IPR006259; KEGG: gfo:GFO_2868 adenylate kinase/hypoxanthine-guanine phosphoribosyltransferase fusion protein; PFAM: Adenylate kinase; SPTR: Adenylate kinase/hypoxanthine-guanine phosphoribosyltransferase fusion protein; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_004344853.1	COGs: COG0536 GTPase; HAMAP: GTPase obg; InterPro IPR006169:IPR002917:IPR014100:IPR005225; KEGG: sli:Slin_5095 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; Small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_004344854.1	InterPro IPR000326; KEGG: bvu:BVU_3293  membrane-associated phospholipid phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR:  uncharacterized protein; PFAM: PAP2 superfamily
YP_004344855.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; HAMAP: Camphor resistance CrcB protein; InterPro IPR003691; KEGG: dfe:Dfer_3981 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: Camphor resistance CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_004344856.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822; KEGG: lic:LIC12324 serine/threonine kinase; PFAM: Sporulation stage II, protein E C-terminal; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004344857.1	InterPro IPR002123; KEGG: hau:Haur_0769 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase
YP_004344858.1	InterPro IPR019861; KEGG: cpi:Cpin_2199 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004344859.1	InterPro IPR003410; KEGG: gfo:GFO_1836 hyalin domain-containing protein; PFAM: Hyalin; SPTR: Secreted protein containing hyalin domain; PFAM: HYR domain
YP_004344860.1	COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: cat:CA2559_05560 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_004344861.1	KEGG: pnu:Pnuc_0350 hypothetical protein; SPTR:  uncharacterized protein
YP_004344862.1	KEGG: rba:RB4547 ankyrin protein; SPTR:  uncharacterized protein
YP_004344863.1	COGs: COG3876 conserved hypothetical protein; InterPro IPR008302; KEGG: zpr:ZPR_1141 secreted protein containing DUF1343; PFAM: Uncharacterised conserved protein UCP016719; SPTR: Secreted protein containing DUF1343; PFAM: Protein of unknown function (DUF1343)
YP_004344864.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pdi:BDI_2025  transmembrane permease; PFAM: Protein of unknown function DUF214, permase predicted; SPTR:  uncharacterized protein; PFAM: Predicted permease
YP_004344865.1	KEGG: tte:TTE0655 glycosyltransferase; SPTR: Predicted glycosyltransferases
YP_004344866.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: pdi:BDI_2288 glycosyl transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_004344867.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: phe:Phep_3030 hypothetical protein; PFAM: Conserved hypothetical protein CHP00730; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_004344868.1	InterPro IPR003367; KEGG: chu:CHU_2528 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004344869.1	InterPro IPR019861; KEGG: fbc:FB2170_16121 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004344870.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004344871.1	KEGG: siy:YG5714_2359 hypothetical protein; SPTR:  uncharacterized protein
YP_004344872.1	KEGG: pgi:PG1798 immunoreactive 46 kDa antigen PG99; SPTR:  uncharacterized protein
YP_004344873.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439:IPR004602; KEGG: fjo:Fjoh_4509 excinuclease ABC, A subunit; PFAM: ABC transporter-like; SPTR: Excinuclease ABC, A subunit; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004344874.1	InterPro IPR008258; KEGG: coc:Coch_1361 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR:  membrane-bound lytic murein transglycosylase; PFAM: Transglycosylase SLT domain
YP_004344875.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: rca:Rcas_0017 glycosyl transferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Glycosyl transferase 4; PFAM: Glycosyl transferase 4
YP_004344876.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: avn:Avin_15950 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR:  dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_004344877.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: sun:SUN_1559 capsular polysaccharide biosynthesis protein; PFAM: Lipopolysaccharide biosynthesis; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Chain length determinant protein; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family
YP_004344878.1	COGs: COG1596 Periplasmic protein involved in polysaccharide export; InterPro IPR003715; KEGG: chu:CHU_3844 polysaccharide export periplasmic protein; PFAM: Polysaccharide export protein; SPTR: Periplasmic protein involved in polysaccharide export; PFAM: Polysaccharide biosynthesis/export protein
YP_004344879.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sro:Sros_6505 glycosyltransferase-like protein; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004344880.1	COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: aas:Aasi_0975 hypothetical protein; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR:  uncharacterized protein; TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
YP_004344881.1	KEGG: vvi:100253418 hypothetical protein LOC100253418; SPTR:  uncharacterized protein
YP_004344882.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: cpi:Cpin_1514 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004344883.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: rbi:RB2501_06660 probable nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: Probable nucleotide sugar dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004344884.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: sli:Slin_3525 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: UDP-glucuronate decarboxylase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase
YP_004344885.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR001451; KEGG: pdi:BDI_2184 hexapeptide transferase, acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Hexapeptide transferase; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_004344886.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: pdi:BDI_2789  dehydrogenase; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR:  uncharacterized protein; PFAM: Oxidoreductase, C-terminal alpha/beta domain; Oxidoreductase, NAD-binding Rossmann fold
YP_004344887.1	COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR001732:IPR014026:IPR014027:IPR017476; KEGG: pdi:BDI_1308 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR:  uncharacterized protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase, central domain; UDP-glucose/GDP-mannose dehydrogenase, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004344888.1	InterPro IPR000601; KEGG: phe:Phep_0242 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain containing protein
YP_004344889.1	KEGG: dfe:Dfer_4722 TPR repeat-containing protein; SPTR: TPR repeat-containing protein
YP_004344890.1	InterPro IPR000601; KEGG: chu:CHU_2870 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004344891.1	InterPro IPR000601; KEGG: cat:CA2559_03270 hypothetical protein; PFAM: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004344892.1	KEGG: chu:CHU_2528 hypothetical protein; SPTR:  uncharacterized protein
YP_004344893.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR019734:IPR001932:IPR001440:IPR010822; KEGG: dae:Dtox_4266 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; Tetratricopeptide TPR-1; SMART: Protein phosphatase 2C-related; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004344894.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR001509:IPR005888; KEGG: cpi:Cpin_1511 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_004344895.1	COGs: COG4464 Capsular polysaccharide biosynthesis protein; InterPro IPR004013; KEGG: chu:CHU_0001 capsular polysaccharide biosythesis protein; PFAM: PHP, C-terminal; SPTR: Capsular polysaccharide biosynthesis protein
YP_004344896.1	COGs: COG2353 conserved hypothetical protein; InterPro IPR007372; KEGG: afw:Anae109_3639 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SPTR: YceI like family protein; PFAM: YceI-like domain
YP_004344897.1	KEGG: fps:FP1212 hypothetical protein; SPTR:  uncharacterized protein
YP_004344898.1	KEGG: zpr:ZPR_0268 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Prolyl oligopeptidase
YP_004344899.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR017568; KEGG: chu:CHU_2863 3-oxoacyl-[acyl-carrier-protein] synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase II; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_004344900.1	COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR002744:IPR014291; KEGG: bfs:BF0426 hypothetical protein; PFAM: Protein of unknown function DUF59; SPTR:  uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly associated; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein
YP_004344901.1	COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: gfo:GFO_3127 Fe-S metabolism associated domain-containing protein; PFAM: Fe-S metabolism associated SufE; SPTR:  uncharacterized protein; PFAM: Fe-S metabolism associated domain
YP_004344902.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR000192:IPR010970; KEGG: fjo:Fjoh_1178 SufS subfamily cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Selenocysteine lyase; SPTR: Cysteine desulfurase; TIGRFAM: Cysteine desulfurase, SufS; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily
YP_004344903.1	KEGG: bcy:Bcer98_1293 phage portal protein SPP1; SPTR: Phage portal protein SPP1
YP_004344904.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: gfo:GFO_3248 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004344905.1	KEGG: ddi:DDB_G0284567 hypothetical protein; SPTR: GDP-GTP exchange factor
YP_004344906.1	COGs: COG1189 rRNA methylase; InterPro IPR002942:IPR002877:IPR004538; KEGG: gme:Gmet_1222 hemolysin A; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4; SMART: RNA-binding S4; SPTR: Hemolysin A; TIGRFAM: Haemolysin A; PFAM: FtsJ-like methyltransferase; S4 domain; TIGRFAM: hemolysin TlyA family protein
YP_004344907.1	InterPro IPR000601; KEGG: cpi:Cpin_6914 PKD domain containing protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004344908.1	InterPro IPR008160; KEGG: bal:BACI_c15000 collagen triple helix repeat domain-containing protein; PFAM: Collagen triple helix repeat; SPTR:  uncharacterized protein; PFAM: Collagen triple helix repeat (20 copies)
YP_004344909.1	KEGG: scb:SCAB_59011 hypothetical protein
YP_004344910.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR011542; KEGG: chu:CHU_0976 iron-regulated ABC transporter, membrane-spanning permease; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: FeS assembly protein SufD; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1
YP_004344911.1	COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003593:IPR003439:IPR010230; KEGG: sli:Slin_0175 FeS assembly ATPase SufC; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: FeS assembly ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_004344912.1	COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: cat:CA2559_04440 hypothetical protein; PFAM: SUF system FeS cluster assembly, SufBD; SPTR:  uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_004344913.1	COGs: COG0316 conserved hypothetical protein; InterPro IPR000361:IPR016092; KEGG: fba:FIC_00051 probable iron binding protein from the HesB_IscA_SufA family; PFAM: FeS cluster biogenesis; SPTR: Scaffold protein for iron-sulfur cluster assembly; TIGRFAM: FeS cluster insertion; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_004344914.1	InterPro IPR000601; KEGG: fjo:Fjoh_4051 PKD domain-containing protein; PFAM: PKD; SPTR: PKD domain containing protein
YP_004344915.1	KEGG: ame:410097 similar to CG10890-PC, isoform C; SPTR: Thioredoxin domain
YP_004344916.1	InterPro IPR000601; KEGG: fps:FP0688 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR: CHU large protein; uncharacterized
YP_004344917.1	COGs: COG0196 FAD synthase; InterPro IPR015864:IPR015865:IPR002606; KEGG: fps:FP0233 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: Riboflavin kinase; FAD synthetase; PRIAM: FAD synthetase., Riboflavin kinase; SPTR: Riboflavin biosynthesis protein RibF; TIGRFAM: Riboflavin kinase/FAD synthetase; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_004344918.1	InterPro IPR003591:IPR001611; KEGG: lil:LA_3323 hypothetical protein; PFAM: Leucine-rich repeat; SPTR: Leucine-rich repeat containing protein; PFAM: Leucine Rich Repeat
YP_004344919.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; HAMAP: D-alanine--D-alanine ligase; InterPro IPR011127:IPR011095:IPR005905; KEGG: bvu:BVU_0547 D-alanyl-alanine synthetase A; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; PRIAM: D-alanine--D-alanine ligase; SPTR:  D-alanine-D-alanine ligase; TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_004344920.1	COGs: COG2815 conserved hypothetical protein; InterPro IPR005543; KEGG: chu:CHU_0923 hypothetical protein; PFAM: PASTA; SMART: PASTA; SPTR:  uncharacterized protein; manually curated; PFAM: PASTA domain
YP_004344921.1	KEGG: dfe:Dfer_2924 hypothetical protein; SPTR:  uncharacterized protein
YP_004344922.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942:IPR006145:IPR006225; KEGG: fjo:Fjoh_2620 RluA family pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_004344923.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: pdi:BDI_3758 outer membrane protein OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR:  uncharacterized protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004344924.1	COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR010918; KEGG: cpi:Cpin_6522 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR:  phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal domain
YP_004344925.1	COGs: COG0216 Protein chain release factor A; HAMAP: Peptide chain release factor 1; InterPro IPR005139:IPR000352:IPR004373; KEGG: fba:FIC_00058 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; SPTR: Peptide chain release factor 1; TIGRFAM: Peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_004344926.1	InterPro IPR012910; KEGG: cpi:Cpin_6408 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004344927.1	KEGG: cpi:Cpin_6409 hypothetical protein; SPTR:  uncharacterized protein
YP_004344928.1	KEGG: sca:Sca_0649 hypothetical protein; SPTR:  uncharacterized protein
YP_004344929.1	KEGG: brm:Bmur_1528 hypothetical protein; SPTR:  uncharacterized protein
YP_004344930.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR001754:IPR011995; KEGG: fps:FP0537 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase, core; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 2, core; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2
YP_004344931.1	COGs: COG3000 Sterol desaturase; InterPro IPR006694; KEGG: dfe:Dfer_2637 fatty acid hydroxylase; PFAM: Fatty acid hydroxylase; SPTR:  uncharacterized protein; PFAM: Fatty acid hydroxylase superfamily
YP_004344932.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; HAMAP: Methylthioribulose-1-phosphate dehydratase; InterPro IPR001303:IPR017714; KEGG: syp:SYNPCC7002_A0554 ribulose-5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal; PRIAM: Methylthioribulose 1-phosphate dehydratase; SPTR: Methylthioribulose-1-phosphate dehydratase; TIGRFAM: Methylthioribulose-1-phosphate dehydratase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: methylthioribulose-1-phosphate dehydratase
YP_004344933.1	COGs: COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor; KEGG: mfa:Mfla_2258 hypothetical protein; SPTR:  uncharacterized protein
YP_004344934.1	KEGG: ncr:NCU00712 3-hydroxy-3-methylglutaryl-coenzyme A reductase; SPTR: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
YP_004344935.1	KEGG: dfe:Dfer_4650 hypothetical protein; SPTR:  uncharacterized protein
YP_004344936.1	KEGG: pbe:PB000660.02.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004344937.1	KEGG: cpi:Cpin_5880 hypothetical protein; SPTR:  uncharacterized protein
YP_004344938.1	KEGG: spr:spr0607 hypothetical protein; SPTR:  uncharacterized protein
YP_004344939.1	COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778:IPR006311; KEGG: chu:CHU_3130 hypothetical protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR:  uncharacterized protein; PFAM: Pirin C-terminal cupin domain; Pirin; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004344940.1	KEGG: coc:Coch_1872 hypothetical protein; SPTR:  uncharacterized protein
YP_004344941.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: bth:BT_3129  flagellar motor protein MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR:  flagellar motor protein MotB; PFAM: OmpA family
YP_004344942.1	InterPro IPR000184; KEGG: cpi:Cpin_3252 outer membrane protein; PFAM: Bacterial surface antigen (D15); SPTR:  uncharacterized protein; PFAM: Surface antigen
YP_004344943.1	COGs: COG1791 conserved hypothetical protein contains double-stranded beta-helix domain; HAMAP: Acireductone dioxygenase; InterPro IPR004313; KEGG: syp:SYNPCC7002_A0553 methionine salvage pathway protein E-2/E-2''; PFAM: Acireductone dioxygenase, ARD; PRIAM: Acireductone dioxygenase (Fe(2+)-requiring); SPTR: Acireductone dioxygenase; PFAM: ARD/ARD' family
YP_004344944.1	KEGG: mhp:MHP7448_0533 phosphatidate cytidylyltransferase synthase; SPTR: NADH-ubiquinone oxidoreductase chain 6
YP_004344945.1	COGs: COG4229 enolase-phosphatase; HAMAP: Enolase-phosphatase E1; InterPro IPR005834:IPR010041:IPR006439; KEGG: syp:SYNPCC7002_A0552 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; PRIAM: Acireductone synthase; SPTR: Enolase-phosphatase E1; TIGRFAM: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
YP_004344946.1	COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; HAMAP: Methylthioribose-1-phosphate isomerase; InterPro IPR000649:IPR005251:IPR011559; KEGG: pla:Plav_2247 eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: Methylthioribose-1-phosphate isomerase; TIGRFAM:  translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_004344947.1	COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: zpr:ZPR_1256 phosphoglycerol transferase; PFAM: Sulfatase; SPTR: Sulfatase; PFAM: Sulfatase
YP_004344948.1	KEGG: cat:CA2559_04300 integrase; SPTR: Site-specific recombinase, phage integrase
YP_004344949.1	KEGG: spo:SPAC4A8.05c myosin II heavy chain Myo3; SPTR:  uncharacterized protein
YP_004344950.1	InterPro IPR010093:IPR010260; KEGG: ptm:GSPATT00006300001 hypothetical protein; PFAM: Prophage CP4-57 regulatory; SPTR:  uncharacterized protein; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase
YP_004344951.1	KEGG: gsu:GSU0001 DNA polymerase III, beta subunit; SPTR: DNA polymerase III, beta subunit
YP_004344952.1	KEGG: plu:plu0188 carbapenem resistance protein CpmG; SPTR:  uncharacterized protein
YP_004344953.1	InterPro IPR001387; KEGG: fjo:Fjoh_4109 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; PFAM: Helix-turn-helix
YP_004344954.1	KEGG: fjo:Fjoh_4397 hypothetical protein; SPTR:  uncharacterized protein
YP_004344955.1	KEGG: rlt:Rleg2_1116 hypothetical protein; SPTR:  uncharacterized protein
YP_004344956.1	KEGG: nha:Nham_2091 hypothetical protein; SPTR:  uncharacterized protein
YP_004344957.1	KEGG: taf:THA_1565 translation initiation factor, eIF-2B alpha subunit-related; SPTR: Translation initiation factor, eIF-2B alpha subunit-related
YP_004344958.1	KEGG: dze:Dd1591_1491 hypothetical protein; SPTR:  uncharacterized protein
YP_004344959.1	COGs: COG1204 Superfamily II helicase; InterPro IPR001650:IPR014001; KEGG: sga:GALLO_1856  helicase; PFAM: DNA/RNA helicase, C-terminal; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR:  uncharacterized protein; PFAM: DEAD/DEAH box helicase
YP_004344960.1	KEGG: vpo:Kpol_1073p1 hypothetical protein; SPTR:  uncharacterized protein
YP_004344961.1	KEGG: cac:CA_C1142 ATP-dependent DNA helicase, UvrD-like; SPTR:  uncharacterized protein
YP_004344962.1	KEGG: azo:azo1851 hypothetical protein; SPTR:  uncharacterized protein
YP_004344963.1	KEGG: cpi:Cpin_4213 hypothetical protein; SPTR:  uncharacterized protein
YP_004344964.1	KEGG: cph:Cpha266_1708 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase)
YP_004344965.1	COGs: COG0358 DNA primase; InterPro IPR002694; KEGG: cph:Cpha266_1709 zinc finger, CHC2-family protein; SPTR: Zinc finger CHC2-family protein; PFAM: CHC2 zinc finger; DNA primase catalytic core, N-terminal domain
YP_004344966.1	KEGG: cpi:Cpin_3191 hypothetical protein; SPTR:  uncharacterized protein
YP_004344967.1	KEGG: fps:FP1558 hypothetical protein; SPTR:  uncharacterized protein
YP_004344968.1	KEGG: aas:Aasi_0589 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2851)
YP_004344969.1	KEGG: chu:CHU_2678 hypothetical protein; SPTR:  uncharacterized protein; PFAM: PspC domain
YP_004344970.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: dfe:Dfer_3226 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-dehydrorhamnose reductase; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_004344971.1	KEGG: phe:Phep_0835 hypothetical protein; SPTR:  uncharacterized protein
YP_004344972.1	COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; HAMAP: Adenine phosphoribosyl transferase; InterPro IPR005764:IPR000836; KEGG: phe:Phep_0836 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR: Adenine phosphoribosyltransferase; TIGRFAM: Adenine phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase
YP_004344973.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: phe:Phep_0837 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004344974.1	HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: fba:FIC_00265 SSU ribosomal protein S21p; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_004344975.1	COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: bfs:BF4024  site-specific recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase
YP_004344976.1	InterPro IPR003489; KEGG: phe:Phep_0841 ribosomal subunit interface protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; SPTR:  uncharacterized protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_004344977.1	COGs: COG0050 GTPase - translation elongation factors; InterProIPR004541:IPR005225:IPR000795:IPR004161:IPR 004160; KEGG: fbc:FB2170_16216 elongation factor Tu; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; SPTR: Elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Elongation factor Tu C-terminal domain; Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004344978.1	InterPro IPR005807:IPR001901; KEGG: phe:Phep_0843 preprotein translocase, SecE subunit; PFAM: Protein secE/sec61-gamma protein; SPTR: Preprotein translocase; TIGRFAM: SecE subunit of protein translocation complex; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_004344979.1	COGs: COG0250 Transcription antiterminator; InterPro IPR001062:IPR006645:IPR005824; KEGG: zpr:ZPR_1163 transcription antitermination protein; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; SPTR: Transcription antitermination protein nusG; TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_004344980.1	COGs: COG0080 Ribosomal protein L11; InterPro IPR006519:IPR020784:IPR020783:IPR000911; KEGG: cat:CA2559_00045 50S ribosomal protein L11; PFAM: Ribosomal protein L11, N-terminal; Ribosomal protein L11, C-terminal; SMART: Ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_004344981.1	COGs: COG0081 Ribosomal protein L1; InterPro IPR005878:IPR002143; KEGG: coc:Coch_0423 50S ribosomal protein L1; PFAM: Ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_004344982.1	COGs: COG0244 Ribosomal protein L10; HAMAP: 50S ribosomal protein L10; InterPro IPR001790; KEGG: rbi:RB2501_02085 50S ribosomal protein L10; PFAM: Ribosomal protein L10; SPTR: Ribosomal protein L10; PFAM: Ribosomal protein L10
YP_004344983.1	COGs: COG0222 Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; InterPro IPR000206:IPR013823; KEGG: fba:FIC_00279 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_004344984.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; InterProIPR010243:IPR007644:IPR007642:IPR007645:IPR 019462:IPR007120:IPR007641; KEGG: phe:Phep_0849 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 2; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_004344985.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; InterProIPR012754:IPR007080:IPR000722:IPR007066:IPR 007083:IPR007081:IPR006592; KEGG: pdi:BDI_2263 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; SMART: RNA polymerase, N-terminal; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_004344986.1	KEGG: cat:CA2559_01460 cell wall associated biofilm protein; SPTR: Cell wall associated biofilm protein
YP_004344987.1	KEGG: fjo:Fjoh_4995 hypothetical protein; SPTR:  uncharacterized protein
YP_004344988.1	InterPro IPR000620; KEGG: chu:CHU_3809 integral membrane protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Integral membrane protein; PFAM: EamA-like transporter family
YP_004344989.1	KEGG: phe:Phep_0851 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3467)
YP_004344990.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: sun:SUN_0096 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004344991.1	KEGG: bbe:BBR47_16580 hypothetical membrane protein; SPTR: Predicted protein; PFAM: O-Antigen ligase
YP_004344992.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: cts:Ctha_0377 glycosyl transferase 2; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase 2; PFAM: Glycosyl transferase 2
YP_004344993.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mbu:Mbur_1581 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group I; PFAM: Glycosyl transferases group 1
YP_004344994.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mbu:Mbur_1581 glycosyl transferase, group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase, group I; PFAM: Glycosyl transferases group 1
YP_004344995.1	KEGG: sii:LD85_1391 hypothetical protein; SPTR:  uncharacterized protein
YP_004344996.1	KEGG: gfo:GFO_1876 hypothetical protein; SPTR: Cell division protein ZapA; PFAM: Cell division protein ZapA
YP_004344997.1	COGs: COG1418 HD superfamily hydrolase; HAMAP: 2,3-cyclic-nucleotide 2-phosphodiesterase; InterProIPR017705:IPR006675:IPR018111:IPR006674:IPR 004087:IPR003607; KEGG: nve:NEMVE_v1g224114 hypothetical protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup; SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; SPTR: Predicted protein; TIGRFAM: 2,3-cyclic-nucleotide 2-phosphodiesterase; HDIG; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_004344998.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: fps:FP1297 UDP-N-acetylglucosamine C4 epimerase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: NAD dependent epimerase; manually curated; PFAM: NAD dependent epimerase/dehydratase
YP_004344999.1	KEGG: sun:SUN_0096 polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; manually curated
YP_004345000.1	InterPro IPR007016; KEGG: cbe:Cbei_0989 O-antigen polymerase; PFAM: O-antigen ligase-related; SPTR: Hypothetical transmembrane protein; PFAM: O-Antigen ligase
YP_004345001.1	KEGG: mru:mru_1879 sialyltransferase; SPTR:  uncharacterized protein
YP_004345002.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: ddf:DEFDS_0379 polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004345003.1	InterPro IPR007016; KEGG: cat:CA2559_02935 hypothetical protein; PFAM: O-antigen ligase-related; SPTR: O-Antigen Polymerase; PFAM: O-Antigen ligase
YP_004345004.1	COGs: COG1083 CMP-N-acetylneuraminic acid synthetase; InterPro IPR003329; KEGG: fbc:FB2170_05775 CMP-N-acetlyneuraminic acid synthetase; PFAM: Acylneuraminate cytidylyltransferase; PRIAM: N-acylneuraminate cytidylyltransferase; SPTR: CMP-N-acetlyneuraminic acid synthetase; PFAM: Cytidylyltransferase
YP_004345005.1	COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR000644:IPR005835; KEGG: bvu:BVU_4038 nucleotidyltransferase; PFAM: Nucleotidyl transferase; Cystathionine beta-synthase, core; SPTR: Nucleotidyl transferase; PFAM: Nucleotidyl transferase; CBS domain
YP_004345006.1	KEGG: cbb:CLD_1857 hypothetical protein; SPTR:  uncharacterized protein; PFAM: FemAB family
YP_004345007.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR020004:IPR003331; KEGG: tit:Thit_0480 UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; PFAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing
YP_004345008.1	COGs: COG2089 Sialic acid synthase; InterPro IPR020007:IPR013132:IPR013974; KEGG: cno:NT01CX_1784 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain; PRIAM: N-acetylneuraminate synthase; SPTR: N-acetylneuraminate synthase; TIGRFAM: N-acetylneuraminate synthase; PFAM: SAF domain; NeuB family; TIGRFAM: N-acetylneuraminate synthase
YP_004345009.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfr:BF1431  aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR:  uncharacterized protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004345010.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: pmx:PERMA_1630 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: dTDP-glucose 4,6-dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase
YP_004345011.1	COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR010139:IPR000991; KEGG: mmp:MMP1082 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase subunit hisH 2; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_004345012.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR006062; KEGG: rci:RCIX1928 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_004345013.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: cbe:Cbei_4627 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_004345014.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: xne:XNC1_0132 hypothetical protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR:  uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase
YP_004345015.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR001451; KEGG: xne:XNC1_0133 transferase hexapeptide repeat; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Transferase hexapeptide repeat; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004345016.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: ctc:CTC02258 succinoglycan biosynthesis protein ExoA; PFAM: Glycosyl transferase, family 2; SPTR: Succinoglycan biosynthesis protein ExoA; PFAM: Glycosyl transferase 2
YP_004345017.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: bfr:BF3912 aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase
YP_004345018.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: bfr:BF3911  undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; SPTR:  undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase
YP_004345019.1	COGs: COG3169 conserved hypothetical protein; InterPro IPR007437; KEGG: dfe:Dfer_2981 protein of unknown function DUF486; PFAM: Protein of unknown function DUF486; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF486
YP_004345020.1	KEGG: fps:FP0696 extracellular ribonuclease precursor; SPTR:  uncharacterized protein
YP_004345021.1	COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048; KEGG: gfo:GFO_0122 methylated-DNA-[protein]-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; SPTR: 6-O-methylguanine DNA methyltransferase, DNA binding domain subfamily protein; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_004345022.1	KEGG: vpo:Kpol_1026p31 hypothetical protein; SPTR:  uncharacterized protein
YP_004345023.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: cpi:Cpin_0690 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase
YP_004345024.1	COGs: COG0218 GTPase; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; InterPro IPR019987:IPR002917; KEGG: phe:Phep_0976 GTP-binding protein HSR1-related; PFAM: GTP-binding protein, HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB
YP_004345025.1	KEGG: lic:LIC20172 lipoprotein; SPTR: CHU large protein; uncharacterized
YP_004345026.1	KEGG: mbr:MONBRDRAFT_9021 hypothetical protein; SPTR:  uncharacterized protein
YP_004345027.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: phe:Phep_2358 pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase
YP_004345029.1	COGs: COG2001 conserved hypothetical protein; HAMAP: MraZ; InterPro IPR003444:IPR020603; KEGG: cpi:Cpin_6970 MraZ protein; PFAM: MraZ domain; SPTR: Protein mraZ; TIGRFAM: MraZ; PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_004345030.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; InterPro IPR002903; KEGG: phe:Phep_3333 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; PFAM: MraW methylase; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_004345031.1	KEGG: cat:CA2559_06550 S-adenosyl-methyltransferase MraW; SPTR:  uncharacterized protein
YP_004345032.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR005543; KEGG: rbi:RB2501_02885 penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; PRIAM: Peptidoglycan glycosyltransferase; SMART: PASTA; SPTR: Penicillin-binding protein; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; PASTA domain
YP_004345033.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; HAMAP:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-di aminopimelateligase; InterPro IPR005761:IPR000713:IPR013221:IPR004101; KEGG: cpi:Cpin_6974 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelateligase; SPTR: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelateligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_004345035.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; InterPro IPR003524:IPR018480:IPR018481; KEGG: cpi:Cpin_6975 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase 4; Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_004345036.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR005762:IPR013221:IPR004101; KEGG: fps:FP2059 UDP-N-acetylmuramoylalanine--D-glutamateligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_004345037.1	KEGG: dya:Dyak_GE14602 GE14602 gene product from transcript GE14602-RA; SPTR: GE14602
YP_004345038.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: cpi:Cpin_6977 cell cycle protein; PFAM: Cell cycle protein; SPTR: Cell cycle protein; PFAM: Cell cycle protein
YP_004345039.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; HAMAP: N-acetylglucosaminyltransferase, MurG; InterPro IPR006009:IPR004276:IPR007235; KEGG: bvu:BVU_1397 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: N-acetylglucosaminyltransferase, MurG; PFAM: Glycosyltransferase 28 N-terminal domain; Glycosyltransferase 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_004345040.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; InterPro IPR005758:IPR000713:IPR013221:IPR004101; KEGG: fjo:Fjoh_1811 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_004345041.1	KEGG: phe:Phep_3324 hypothetical protein; SPTR:  uncharacterized protein
YP_004345042.1	KEGG: fps:FP0688 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004345043.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: dal:Dalk_5003 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004345044.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011712:IPR003594:IPR019734; KEGG: cat:CA2559_01475 histidine kinase sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: Tetratricopeptide repeat; SPTR: Histidine kinase sensor protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345045.1	COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR020823:IPR003494; KEGG: phe:Phep_3323 cell division protein FtsA; PFAM: Cell division protein FtsA domain; SPTR: Cell division protein A; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_004345046.1	COGs: COG0206 Cell division GTPase; InterPro IPR000158:IPR003008:IPR018316; KEGG: phe:Phep_3322 cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_004345047.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: gfo:GFO_0371 GatB/YqeY domain-containing protein; SPTR: Protein containing GatB/Yqey domain; PFAM: Yqey-like protein
YP_004345048.1	InterPro IPR001647; KEGG: app:CAP2UW1_3345 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004345049.1	KEGG: bge:BC1002_6686 hypothetical protein; SPTR:  uncharacterized protein
YP_004345050.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; HAMAP: Adenosylhomocysteinase; InterPro IPR000043:IPR015878; KEGG: fba:FIC_00564 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_004345051.1	KEGG: bhy:BHWA1_01126 hypothetical protein; SPTR:  uncharacterized protein
YP_004345052.1	KEGG: pfh:PFHG_01912 conserved hypothetical protein; SPTR: Conserved Plasmodium protein
YP_004345053.1	KEGG: ptm:GSPATT00018205001 hypothetical protein; SPTR: Chromosome undetermined scaffold_55, whole genome shotgun sequence
YP_004345054.1	KEGG: bvu:BVU_0765 hypothetical protein; SPTR:  uncharacterized protein
YP_004345055.1	KEGG: ctp:CTRG_00478 hypothetical protein; SPTR: Predicted protein
YP_004345056.1	InterPro IPR005599; KEGG: cts:Ctha_2672 Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase; SPTR: Alg9 family protein mannosyltransferase; PFAM: Alg9-like mannosyltransferase
YP_004345057.1	KEGG: phe:Phep_3626 hypothetical protein; SPTR:  uncharacterized protein
YP_004345058.1	KEGG: cin:100184486 similar to P1 protamine; SPTR:  uncharacterized protein
YP_004345059.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: fbc:FB2170_11906 hypothetical protein; SPTR:  uncharacterized protein; PFAM: NMT1/THI5 like
YP_004345060.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593; KEGG: phe:Phep_0669 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter, ATP-binding/membrane-spanning protein; PFAM: ABC transporter; ABC transporter transmembrane region
YP_004345061.1	COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: pgn:PGN_0779 uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; SPTR:  uncharacterized protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_004345062.1	KEGG: sli:Slin_5175 hypothetical protein; SPTR:  uncharacterized protein
YP_004345063.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR011951:IPR006439:IPR005834; KEGG: cpi:Cpin_0667 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254
YP_004345064.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: chu:CHU_1885 ATP-dependent RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Possible ATP-dependent RNA helicase; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004345065.1	InterPro IPR001623; KEGG: cat:CA2559_10153 hypothetical protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR:  uncharacterized protein; PFAM: DnaJ domain
YP_004345066.1	InterPro IPR006260; KEGG: pgn:PGN_1275 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004345067.1	KEGG: pcb:PC000619.03.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004345068.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_0485 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345069.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: sli:Slin_0484 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004345070.1	KEGG: zpr:ZPR_3173 KWG Leptospira; SPTR:  lipoprotein
YP_004345071.1	COGs: COG0566 rRNA methylase; InterPro IPR004441:IPR013123:IPR001537; KEGG: bfs:BF2853  tRNA:rRNA methyltransferase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: SpoU rRNA Methylase; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3
YP_004345072.1	InterPro IPR003718; KEGG: prw:PsycPRwf_0647 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC family protein; PFAM: OsmC-like protein
YP_004345073.1	KEGG: ctt:CtCNB1_2638 hypothetical protein; SPTR:  BigA-like protein
YP_004345074.1	KEGG: phu:Phum_PHUM380940 trichohyalin, SPTR: Lipoate--protein ligase
YP_004345075.1	COGs: COG0320 Lipoate synthase; HAMAP: Lipoate synthase; InterPro IPR003698:IPR007197:IPR006638; KEGG: cpi:Cpin_1966 lipoyl synthase; PFAM: Radical SAM; PRIAM: Lipoyl synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Lipoyl synthase; TIGRFAM: Lipoate synthase; PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase
YP_004345077.1	KEGG: cpi:Cpin_0973 TonB-dependent receptor plug; SPTR:  uncharacterized protein
YP_004345078.1	KEGG: bth:BT_4163 hypothetical protein; SPTR:  uncharacterized protein
YP_004345079.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR006258:IPR013027:IPR004099; KEGG: phe:Phep_3710 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_004345080.1	COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); HAMAP: Ferrochelatase; InterPro IPR001015; KEGG: dfe:Dfer_4417 ferrochelatase; PFAM: Ferrochelatase; PRIAM: Ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: Ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_004345081.1	KEGG: vha:VIBHAR_03229 outer membrane protein assembly factor YaeT; SPTR:  uncharacterized protein
YP_004345082.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fjo:Fjoh_0592 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Hydrolase, alpha/beta fold family protein; PFAM: alpha/beta hydrolase fold
YP_004345083.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: phe:Phep_3165 helix-turn-helix-domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Helix-turn-helix-domain containing protein AraC type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345084.1	KEGG: cjj:CJJ81176_1655 thiredoxin,-like protein; SPTR: Thiredoxin, homolog
YP_004345085.1	InterPro IPR003689; KEGG: cat:CA2559_08551 hypothetical protein; PFAM: Zinc/iron permease; SPTR:  uncharacterized protein; PFAM: ZIP Zinc transporter
YP_004345086.1	InterPro IPR013216; KEGG: phe:Phep_1411 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase; PFAM: Methyltransferase domain
YP_004345087.1	KEGG: drt:Dret_2358 hypothetical protein; SPTR:  uncharacterized protein
YP_004345088.1	InterPro IPR018530; KEGG: lbl:LBL_2181 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004345089.1	COGs: COG0237 Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; InterPro IPR001977; KEGG: pdi:BDI_1861  dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR:  dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_004345090.1	KEGG: cme:CMS043C probable transporter, Pfam sugar transporter; SPTR: Wzx
YP_004345091.1	InterPro IPR019500; KEGG: fps:FP0382 hypothetical protein; PFAM: Peptidase S46; SPTR:  uncharacterized protein; PFAM: Peptidase S46
YP_004345092.1	InterPro IPR019854; KEGG: fbc:FB2170_16996 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Gliding motility-associated protein, GldC; TIGRFAM: gliding motility-associated protein GldC
YP_004345093.1	KEGG: cat:CA2559_06580 hypothetical protein; SPTR:  uncharacterized protein
YP_004345094.1	KEGG: phe:Phep_0410 hypothetical protein; SPTR:  uncharacterized protein
YP_004345095.1	COGs: COG0171 NAD synthase; InterPro IPR003694; KEGG: fbc:FB2170_17006  NH(3)-dependent NAD synthetase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase
YP_004345096.1	COGs: COG4783  Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: gca:Galf_2531 peptidase M48 Ste24p; PFAM: Peptidase M48; SPTR: Peptidase M48, Ste24p; PFAM: Peptidase M48
YP_004345097.1	KEGG: bpu:BPUM_3463 cytochrome aa3 quinol oxidase subunit I; SPTR: Cytochrome aa3 quinol oxidase subunit I
YP_004345098.1	InterPro IPR001041; KEGG: fjo:Fjoh_1324 ferredoxin; PFAM: Ferredoxin; SPTR: Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004345099.1	KEGG: ptm:GSPATT00009259001 hypothetical protein; SPTR:  uncharacterized protein
YP_004345100.1	KEGG: pfh:PFHG_02983 predicted protein; SPTR: Conserved Plasmodium protein
YP_004345101.1	KEGG: pbe:PB000283.03.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004345102.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); HAMAP: Chaperonin Cpn60; InterPro IPR001844:IPR002423; KEGG: phe:Phep_0243 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: Chaperonin Cpn60; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_004345103.1	COGs: COG0234 Co-chaperonin GroES (HSP10); HAMAP: Chaperonin Cpn10, subgroup; InterPro IPR001476:IPR020818; KEGG: chu:CHU_1827 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_004345104.1	InterPro IPR004692; KEGG: pdi:BDI_0195 preprotein translocase subunit SecG; PFAM: Preprotein translocase SecG subunit; SPTR:  uncharacterized protein; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_004345105.1	KEGG: fjo:Fjoh_1846 hypothetical protein; SPTR:  uncharacterized protein
YP_004345106.1	KEGG: phe:Phep_0247 hypothetical protein; SPTR:  uncharacterized protein
YP_004345107.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078:IPR002197:IPR003593; KEGG: coc:Coch_1203 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; SPTR: Transcriptional regulator, sigma-54-related protein; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004345108.1	COGs: COG0621 2-methylthioadenine synthetase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; InterProIPR005839:IPR006463:IPR013848:IPR007197:IPR 002792:IPR006638; KEGG: phe:Phep_0249 (dimethylallyl)adenosine tRNA methylthiotransferase; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: RNA modification enzyme, MiaB family; TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_004345109.1	COGs: COG0550 Topoisomerase IA; InterProIPR005733:IPR006171:IPR013497:IPR006154:IPR 003601:IPR003602; KEGG: phe:Phep_2189 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_004345110.1	KEGG: fjo:Fjoh_1852 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Arginase
YP_004345111.1	InterPro IPR019861; KEGG: chu:CHU_3655 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345112.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: cat:CA2559_00725 lipoprotein, PFAM: Sulphatase-modifying factor; SPTR:  lipoprotein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK
YP_004345113.1	InterPro IPR019852; KEGG: chu:CHU_0172 gliding motility-related protein; SPTR: Gliding motility-related protein; TIGRFAM: Gliding motility-associated protein, GldL; TIGRFAM: gliding motility-associated protein GldL
YP_004345114.1	KEGG: phe:Phep_0385 hypothetical protein; SPTR:  uncharacterized protein; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM
YP_004345115.1	InterPro IPR019847; KEGG: cpi:Cpin_0479 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Gliding motility associated protein GldN; TIGRFAM: gliding motility associated protien GldN
YP_004345116.1	InterPro IPR019847; KEGG: cpi:Cpin_0479 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Gliding motility associated protein GldN; TIGRFAM: gliding motility associated protien GldN
YP_004345117.1	KEGG: pdi:BDI_3322 hypothetical protein; SPTR: GldM family protein; PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM
YP_004345118.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: zpr:ZPR_4144 ABC-type transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC-type transporter ATP-binding protein; PFAM: ABC transporter
YP_004345119.1	KEGG: fjo:Fjoh_1714 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2797)
YP_004345120.1	KEGG: fps:FP2310 hypothetical protein; SPTR:  uncharacterized protein
YP_004345121.1	KEGG: chu:CHU_1634 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004345122.1	KEGG: pyo:PY06310 hypothetical protein; SPTR:  uncharacterized protein
YP_004345123.1	InterPro IPR001387; KEGG: gfo:GFO_0674 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; PFAM: Helix-turn-helix
YP_004345124.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; HAMAP: ATP-dependent Clp protease proteolytic subunit; InterPro IPR001907; KEGG: zpr:ZPR_0629 ATP-dependent Clp protease proteolytic subunit 2; PFAM: Peptidase S14, ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_004345125.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; HAMAP: Clp protease, ATP-binding subunit ClpX; InterProIPR004487:IPR010603:IPR013093:IPR019489:IPR 003593; KEGG: pdi:BDI_2395 ATP-dependent protease ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR:  uncharacterized protein; TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_004345126.1	KEGG: mse:Msed_1163 hypothetical protein; SPTR:  uncharacterized protein
YP_004345127.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; InterPro IPR003358; KEGG: pmz:HMPREF0659_A6704  tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; PRIAM: tRNA (guanine-N(7)-)-methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N-7) methyltransferase; PFAM:  methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_004345128.1	COGs: COG3158 K+ transporter; HAMAP: Low affinity potassium transport system protein kup; InterPro IPR003855; KEGG: fps:FP0619 potassium transport system protein Kup; PFAM: K+ potassium transporter; SPTR: Probable potassium transport system protein kup; PFAM: K+ potassium transporter
YP_004345129.1	KEGG: cpi:Cpin_0710 glycosyltransferase 28 domain protein; SPTR: Glycosyltransferase 28 domain protein; PFAM: Glycosyltransferase 28 C-terminal domain
YP_004345130.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: phe:Phep_0192 ATP-binding region ATPase domain protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Phosphate regulon sensor histidine kinase PhoR; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004345131.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: rbi:RB2501_08405 response regulator DrrA; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator DrrA; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004345132.1	COGs: COG0101 Pseudouridylate synthase; HAMAP: Pseudouridine synthase I, TruA; InterPro IPR001406:IPR020097; KEGG: bvu:BVU_2546 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_004345133.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR010559; KEGG: cpi:Cpin_5951 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator propeller; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase
YP_004345134.1	COGs: COG0162 Tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; InterPro IPR002307:IPR002305; KEGG: zpr:ZPR_0494 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; PRIAM: Tyrosine--tRNA ligase; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_004345135.1	KEGG: fba:FIC_01515 peptidase M4, thermolysin; SPTR: Fibronectin type III domain protein
YP_004345136.1	COGs: COG1738 conserved hypothetical protein; InterPro IPR003744; KEGG: fjo:Fjoh_1607 hypothetical protein; PFAM: Protein of unknown function DUF165; SPTR:  uncharacterized protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein
YP_004345137.1	COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); HAMAP: Aquaporin Z; InterPro IPR012269:IPR000425; KEGG: fbc:FB2170_08014 aquaporin Z; PFAM: Major intrinsic protein; SPTR: Aquaporin Z; TIGRFAM: Aquaporin; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins
YP_004345138.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR019864:IPR003439:IPR003593; KEGG: cat:CA2559_07370 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC-type multidrug transport system, ATPase component; TIGRFAM: Gliding motility-associated ABC transporter ATP-binding subunit GldA; PFAM: ABC transporter; TIGRFAM: gliding motility-associated ABC transporter ATP-binding subunit GldA
YP_004345139.1	COGs: COG1162 GTPase; HAMAP: ribosome biogenesis GTPase RsgA; InterPro IPR004881; KEGG: zpr:ZPR_3523 ribosome-associated GTPase; PFAM: GTPase EngC; SPTR: Ribosome-associated GTPase; TIGRFAM: GTPase EngC; PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_004345140.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; InterPro IPR003732; KEGG: fjo:Fjoh_0512 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_004345141.1	InterPro IPR004518; KEGG: sli:Slin_3481 MazG nucleotide pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG,  catalytic core; SPTR: MazG nucleotide pyrophosphohydrolase; PFAM: MazG nucleotide pyrophosphohydrolase domain
YP_004345142.1	InterPro IPR002921; KEGG: dfe:Dfer_5096 lipase class 3; PFAM: Lipase, class 3; SPTR: Lipase class 3; PFAM: Lipase (class 3)
YP_004345143.1	KEGG: dha:DEHA2D11880g DEHA2D11880p; SPTR: Tubulin-related protein-like
YP_004345144.1	KEGG: cel:C38D9.5 hypothetical protein; SPTR: Protein C38D9.5, partially confirmed by transcript evidence
YP_004345145.1	InterPro IPR000086; KEGG: cpi:Cpin_4696 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004345146.1	KEGG: cat:CA2559_07030 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase
YP_004345147.1	KEGG: fjo:Fjoh_2065 hypothetical protein; SPTR: Transposase; PFAM: Transposase IS200 like
YP_004345148.1	COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: fps:FP1000 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter family protein; PFAM: Phosphate transporter family
YP_004345149.1	COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: cpi:Cpin_0179 protein of unknown function DUF47; PFAM: Putitive phosphate transport regulator; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153
YP_004345150.1	InterPro IPR010870; KEGG: gfo:GFO_3192 phosphate-selective porin O and P; PFAM: Phosphate-selective porin O/P; SPTR: Phosphate-selective porin O and P superfamily protein; PFAM: Phosphate-selective porin O and P
YP_004345151.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: gfo:GFO_0118 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004345152.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: phe:Phep_0203 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004345153.1	COGs: COG1214 Inactive homolog of metal-dependent protease  molecular chaperone; InterPro IPR000905; KEGG: fjo:Fjoh_1673 peptidase M22, glycoprotease; PFAM: Peptidase M22, glycoprotease; SPTR: Peptidase M22-like protein; TIGRFAM: universal protein YeaZ; PFAM: Glycoprotease; TIGRFAM: universal bacterial protein YeaZ
YP_004345154.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: phe:Phep_1603 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: MFS family major facilitator transporter, fosmidomycin:cation antiporter; PFAM: Major Facilitator Superfamily
YP_004345155.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR020822; KEGG: bth:BT_3934  phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase; PFAM: DAHP synthetase I/KDSA; Chorismate mutase, type II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR:  uncharacterized protein; PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004345156.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; InterPro IPR006264:IPR001986; KEGG: cpi:Cpin_1942 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004345157.1	InterPro IPR011935; KEGG: zpr:ZPR_2072 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02231; TIGRFAM: conserved hypothetical protein
YP_004345158.1	InterPro IPR011659; KEGG: chu:CHU_1710 OmpA family peptidoglycan-associated lipoprotein; PFAM: WD40-like Beta Propeller; SPTR: Peptidoglycan-associated cytoplasmic membrane protein, ; PFAM: WD40-like Beta Propeller Repeat
YP_004345159.1	KEGG: cpi:Cpin_1193 protein of unknown function DUF540; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF540)
YP_004345160.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR004769:IPR000362:IPR013539; KEGG: gfo:GFO_1092 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal; Fumarate lyase; PRIAM: Adenylosuccinate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase
YP_004345161.1	KEGG: chu:CHU_3611 hypothetical protein; SPTR:  uncharacterized protein
YP_004345162.1	COGs: COG0815 Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; InterPro IPR004563:IPR003010; KEGG: gfo:GFO_0586 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase
YP_004345163.1	KEGG: fgr:FG02216.1 hypothetical protein; SPTR: Prolyl 4-hydroxylase subunit alpha
YP_004345164.1	InterPro IPR002884:IPR003343:IPR000601; KEGG: fps:FP0595 hypothetical protein; PFAM: Bacterial Ig-like, group 2; Proprotein convertase, P; PKD; SMART: Bacterial Ig-like, group 2; PKD; SPTR:  uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2); Proprotein convertase P-domain; PKD domain
YP_004345165.1	KEGG: emi:Emin_0462 hypothetical protein; SPTR:  uncharacterized protein
YP_004345166.1	KEGG: cpi:Cpin_4595 hypothetical protein; SPTR:  uncharacterized protein
YP_004345167.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sli:Slin_5907 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix
YP_004345168.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR003367:IPR006665; KEGG: fjo:Fjoh_2321 OmpA/MotB domain-containing protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Thrombospondin, type 3-like repeat; SPTR: OmpA/MotB domain protein; PFAM: OmpA family; Thrombospondin type 3 repeat
YP_004345169.1	KEGG: cat:CA2559_05535 ribonuclease HII; SPTR:  uncharacterized protein
YP_004345170.1	COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: bfs:BF0239 ribonuclease HII; PFAM: Ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII
YP_004345171.1	KEGG: cpf:CPF_0649  L-xylulose 5-phosphate 3-epimerase; SPTR:  hexulose-6-phosphate isomerase
YP_004345172.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: VCBS
YP_004345173.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: phe:Phep_3722 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004345174.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR003018:IPR011495:IPR003594; KEGG: rci:LRC339  signal transduction histidine kinase; PFAM: GAF; Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: GAF; ATPase-like, ATP-binding domain; SPTR: Two-component hybrid sensor and regulator; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; TIGRFAM: PAS domain S-box
YP_004345175.1	InterPro IPR000182; KEGG: cps:CPS_0902 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, GNAT family; PFAM: Acetyltransferase (GNAT) family
YP_004345176.1	COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: lpf:lpl0248 hypothetical protein; PFAM: CoA-transferase III; PRIAM: Formyl-CoA transferase; SPTR:  uncharacterized protein; PFAM: CoA-transferase III
YP_004345177.1	COGs: COG0797 Lipoprotein; InterPro IPR005132; KEGG: nmi:NMO_1770 rare lipoprotein A family protein; PFAM: Rare lipoprotein A; SPTR: RlpA family protein; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A
YP_004345178.1	COGs: COG2183 Transcriptional accessory protein; InterPro IPR018974:IPR003029:IPR006641; KEGG: pdi:BDI_1372 RNA-binding protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA binding domain; SMART: Resolvase, RNase H-like fold; SPTR: S1 RNA binding domain protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region
YP_004345179.1	KEGG: geo:Geob_3026 hypothetical protein; SPTR:  uncharacterized protein
YP_004345180.1	InterPro IPR011727; KEGG: fjo:Fjoh_2468 hypothetical protein; PFAM: Conserved hypothetical protein CHP02117; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2459); TIGRFAM: conserved hypothetical protein
YP_004345181.1	COGs: COG0525 Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; InterPro IPR002303:IPR002300:IPR013155:IPR019499; KEGG: gfo:GFO_2933 valyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ia; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; PRIAM: Valine--tRNA ligase; SPTR: Valyl-tRNA synthetase; TIGRFAM: Valyl-tRNA synthetase, class Ia; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_004345182.1	KEGG: chu:CHU_3611 hypothetical protein; SPTR:  uncharacterized protein
YP_004345183.1	KEGG: sun:SUN_1093 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Transposase IS200 like
YP_004345184.1	COGs: COG3292 periplasmic ligand-binding sensor domain; InterPro IPR011110; KEGG: rmr:Rmar_1703 histidine kinase; PFAM: Two component regulator propeller; SPTR: GGDEF domain protein; PFAM: Two component regulator propeller
YP_004345185.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867; KEGG: fbc:FB2170_01532 DNA-binding response regulator RprY; PFAM: Signal transduction response regulator, C-terminal; SPTR: DNA-binding response regulator RprY; PFAM: Transcriptional regulatory protein, C terminal
YP_004345186.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: gfo:GFO_0391 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_004345187.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR011611; KEGG: dfe:Dfer_4000 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: Bifunctional protein HldE; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I
YP_004345188.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; HAMAP: UbiE/COQ5 methyltransferase; InterPro IPR004033; KEGG: phe:Phep_0977 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: ubiE/COQ5 methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_004345189.1	KEGG: phe:Phep_0978 hypothetical protein; SPTR:  uncharacterized protein; TC 1.B.44.1.1
YP_004345190.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; KEGG: cat:CA2559_12613 uncharacterized FAD-dependent dehydrogenase; SPTR: Uncharacterized FAD-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004345191.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440:IPR019734; KEGG: ter:Tery_2349 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: TPR repeat; PFAM: Tetratricopeptide repeat
YP_004345192.1	COGs: COG0566 rRNA methylase; InterPro IPR013123:IPR001537; KEGG: fjo:Fjoh_1465 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SPTR: tRNA/rRNA methyltransferase (SpoU); PFAM: SpoU rRNA Methylase
YP_004345193.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR000184; KEGG: coc:Coch_0452 surface antigen (D15); PFAM: Bacterial surface antigen (D15); SPTR:  uncharacterized protein; PFAM: Surface antigen
YP_004345194.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR006411:IPR000771; KEGG: fps:FP0323 fructose-bisphosphate aldolase; PFAM: Ketose-bisphosphate aldolase, class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase; TIGRFAM: Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype; Ketose-bisphosphate aldolase, class-II; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, yeast/E. coli subtype
YP_004345195.1	COGs: COG0777 Acetyl-CoA carboxylase beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; InterPro IPR000438:IPR000022; KEGG: dfe:Dfer_3482 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; PRIAM: Acetyl-CoA carboxylase; SPTR: Acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_004345196.1	COGs: COG3758 conserved hypothetical protein; InterPro IPR010282; KEGG: ctc:CTC00834 hypothetical protein; PFAM: HutD; SPTR: Conserved protein; PFAM: HutD
YP_004345197.1	KEGG: ptm:GSPATT00035211001 hypothetical protein; SPTR: Chromosome undetermined scaffold_150, whole genome shotgun sequence
YP_004345198.1	COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR005290:IPR000589; KEGG: rbi:RB2501_02720  30S ribosomal protein S15; PFAM: Ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_004345199.1	COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); HAMAP: Polyribonucleotide nucleotidyltransferase; InterProIPR012162:IPR001247:IPR015847:IPR015848:IPR 018111:IPR003029:IPR004087; KEGG: bfs:BF4129 polynucleotide phosphorylase/polyadenylase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; PRIAM: Polyribonucleotide nucleotidyltransferase; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: Polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_004345200.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: pdi:BDI_1953  diacylglycerol kinase; PFAM: Diacylglycerol kinase, prokaryotic; SPTR: Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase
YP_004345201.1	KEGG: tan:TA02995 SfiI-subtelomeric fragment related protein family member; SPTR:  uncharacterized protein
YP_004345202.1	KEGG: pyo:PY03255 RNA polymerase A/beta'/A'' subunit; SPTR: DNA-directed RNA polymerase
YP_004345203.1	COGs: COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC; InterPro IPR011815:IPR001264:IPR001460:IPR009647; KEGG: bfs:BF1350  penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; PRIAM: Peptidoglycan glycosyltransferase; SPTR:  penicillin-binding protein; TIGRFAM: Penicillin-binding protein 1C; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C
YP_004345204.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR011123:IPR010559:IPR003594; KEGG: phe:Phep_0783 ATP-binding region ATPase domain protein; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; ATPase-like, ATP-binding domain; SPTR: Histidine kinase DhkJ; PFAM: Histidine kinase; Y_Y_Y domain; Two component regulator propeller
YP_004345205.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator, LytR/AlgR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004345206.1	COGs: COG4539 membrane protein; KEGG: fjo:Fjoh_1822 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF962)
YP_004345207.1	COGs: COG2373 Large extracellular alpha-helical protein; InterPro IPR002890:IPR011625; KEGG: phe:Phep_2191 alpha-2-macroglobulin domain protein; PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; SPTR:  outer membrane protein; PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin MG1 domain; Alpha-2-macroglobulin family N-terminal region
YP_004345208.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782:IPR015211; KEGG: phe:Phep_2445 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal; PRIAM: Leukotriene-A(4) hydrolase; SPTR: Leukotriene A-4 hydrolase (LTA-4 hydrolase) (LeukotrieneA(4) hydrolase); PFAM: Leukotriene A4 hydrolase, C-terminal; Peptidase M1
YP_004345209.1	COGs: COG1179 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 1; InterPro IPR000594; KEGG: fba:FIC_00072 HesA/MoeB/ThiF family protein; PFAM: UBA/THIF-type NAD/FAD binding fold; SPTR: HesA/MoeB/ThiF family protein; PFAM: ThiF family
YP_004345210.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR001130; KEGG: fba:FIC_00071 TatD-related deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: TatD-related deoxyribonuclease; PFAM: TatD related DNase
YP_004345211.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279:IPR000109; KEGG: bth:BT_4385 di-tripeptide ABC transporter; PFAM: Oligopeptide transporter; SPTR:  uncharacterized protein; TIGRFAM: Amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_004345212.1	COGs: COG3104 Dipeptide/tripeptide permease; InterPro IPR005279:IPR000109; KEGG: fba:FIC_01451  proton-dependent peptide transporter; PFAM: Oligopeptide transporter; SPTR:  proton-dependent peptide transporter; TIGRFAM: Amino acid/peptide transporter; PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_004345213.1	KEGG: mpr:MPER_09345 hypothetical protein; SPTR:  uncharacterized protein
YP_004345214.1	KEGG: mgr:MGG_09969 hypothetical protein; SPTR:  uncharacterized protein
YP_004345215.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: dps:DP2911 hypothetical protein; PFAM: tRNA-dihydrouridine synthase; SPTR:  uncharacterized protein; PFAM: Dihydrouridine synthase (Dus)
YP_004345216.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: fjo:Fjoh_0453 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Predicted short-chain dehydrogenase; PFAM: short chain dehydrogenase
YP_004345217.1	COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: fjo:Fjoh_1048 ferredoxin; PFAM: Ferredoxin; Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; SPTR: Flavodoxin reductase (Ferredoxin-NADPH reductase) family 1; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_004345218.1	COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR011884:IPR008333:IPR001433:IPR001041; KEGG: azo:azo0308 phenylacetic acid degradation NADH oxidoreductase PaaE; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; PRIAM: Nitric oxide dioxygenase; SPTR: Probable phenylacetic acid degradation NADH oxidoreductase PaaE; TIGRFAM: Phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit
YP_004345219.1	COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: sli:Slin_0247 ApaG domain protein; PFAM: ApaG; SPTR: ApaG protein; PFAM: Protein of unknown function (DUF525)
YP_004345220.1	InterPro IPR001440:IPR019734:IPR006597; KEGG: ter:Tery_2811 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR-1; SPTR:  ggdef family protein
YP_004345221.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931:IPR015590; KEGG: cat:CA2559_12908 probable delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: 1-pyrroline-5-carboxylate dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 1; manually curated; PFAM: Aldehyde dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1
YP_004345222.1	InterPro IPR019861; KEGG: cpi:Cpin_6913 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345223.1	InterPro IPR000601; KEGG: chu:CHU_1906 CHU large protein, SAP or adhesin AidA-related; SMART: PKD; SPTR: CHU large protein, possible SAP or adhesin AidA-related
YP_004345225.1	COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR011883:IPR002744; KEGG: cat:CA2559_05315  phenylacetic acid degradation protein; PFAM: Protein of unknown function DUF59; SPTR:  phenylacetic acid degradation protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: Domain of unknown function DUF59; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit
YP_004345226.1	COGs: COG3396 conserved hypothetical protein; InterPro IPR011882:IPR007814; KEGG: rpb:RPB_3639 phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic; SPTR: Phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: Phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit
YP_004345227.1	COGs: COG3460 Uncharacterized protein of phenylacetate metabolism; InterPro IPR009359; KEGG: nha:Nham_0929 phenylacetate-CoA oxygenase subunit PaaB; PFAM: Phenylacetic acid degradation B; SPTR: Phenylacetic acid degradation B; TIGRFAM: Phenylacetic acid degradation B; PFAM: Phenylacetic acid degradation B; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit
YP_004345228.1	COGs: COG3396 conserved hypothetical protein; InterPro IPR011881:IPR007814; KEGG: bbr:BB3435 phenylacetate-CoA oxygenase subunit PaaA; PFAM: Phenylacetic acid catabolic; SPTR:  uncharacterized protein; TIGRFAM: Phenylacetate-CoA oxygenase, PaaG subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit
YP_004345230.1	KEGG: coc:Coch_0300 hypothetical protein; SPTR:  uncharacterized protein
YP_004345231.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: fbc:FB2170_10186 DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III, beta chain; SPTR: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_004345232.1	KEGG: chu:CHU_1548 hypothetical protein; SPTR:  uncharacterized protein
YP_004345233.1	COGs: COG3225 ABC-type uncharacterized transport system involved in gliding motility auxiliary component; InterPro IPR019196; KEGG: chu:CHU_1547 gliding motility protein, ABC-related protein; PFAM: ABC-type uncharacterised transport system; SPTR: Possible gliding motility protein, possible ABC-related protein; PFAM: ABC-type uncharacterized transport system; TIGRFAM: gliding-associated  ABC transporter substrate-binding component GldG
YP_004345234.1	KEGG: fps:FP1089 gliding motility protein GldF; SPTR: Gliding motility protein GldF; PFAM: ABC-2 type transporter; TIGRFAM: gliding motility-associated ABC transporter permease GldF
YP_004345235.1	InterPro IPR007138; KEGG: fbc:FB2170_10191 antibiotic biosynthesis monooxygenase domain protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR:  uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase
YP_004345236.1	COGs: COG1912 conserved hypothetical protein; InterPro IPR002747; KEGG: phe:Phep_1862 protein of unknown function DUF62; PFAM: Protein of unknown function DUF62; SPTR:  uncharacterized protein; manually curated; PFAM: S-adenosyl-l-methionine hydroxide adenosyltransferase
YP_004345237.1	COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714:IPR003593; KEGG: fbc:FB2170_10201  phosphate starvation-inducible PhoH-like protein; PFAM: PhoH-like protein; SMART: ATPase, AAA+ type, core; SPTR:  phosphate starvation-inducible PhoH-like protein; PFAM: PhoH-like protein
YP_004345238.1	COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; HAMAP: SAICAR synthetase; InterPro IPR001636; KEGG: fjo:Fjoh_2728 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004345239.1	KEGG: bpn:BPEN_287 outer membrane protein precursor; SPTR:  hemin receptor
YP_004345240.1	COGs: COG0300 Short-chain dehydrogenase of various substrate specificities; InterPro IPR002198; KEGG: abo:ABO_1265 oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: Oxidoreductase; PFAM: short chain dehydrogenase
YP_004345241.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: mbn:Mboo_1812 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Signal Transduction Histidine Kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345242.1	KEGG: cts:Ctha_1388 tetratricopeptide TPR_2 repeat protein; SPTR:  uncharacterized protein
YP_004345243.1	COGs: COG0279 Phosphoheptose isomerase; HAMAP: Phosphoheptose isomerase; InterPro IPR004515:IPR020620:IPR001347; KEGG: hso:HS_1238 phosphoheptose isomerase; PFAM: Sugar isomerase (SIS); SPTR: Phosphoheptose isomerase; TIGRFAM: Phosphoheptose isomerase, subgroup; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase
YP_004345244.1	KEGG: zpr:ZPR_0469 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Tellurite resistance protein TerB
YP_004345245.1	KEGG: cdu:CD36_12900 hypothetical protein; SPTR: ATP synthase subunit a
YP_004345246.1	InterPro IPR000601; KEGG: chu:CHU_3715 PKD repeat-containing protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004345247.1	KEGG: fbc:FB2170_14273 hypothetical protein; SPTR:  uncharacterized protein
YP_004345248.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR010466:IPR000064; KEGG: fjo:Fjoh_4613 NLP/P60 protein; PFAM: NLP/P60; Protein of unknown function DUF1058; SPTR: Polysugar degrading enzyme; PFAM: NlpC/P60 family; Bacterial SH3 domain
YP_004345249.1	COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR001085; KEGG: sli:Slin_4970 glycine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004345250.1	KEGG: bph:Bphy_3722 hypothetical protein; SPTR:  uncharacterized protein
YP_004345251.1	KEGG: str:Sterm_3566 hypothetical protein; SPTR:  uncharacterized protein
YP_004345252.1	InterPro IPR003961; KEGG: sli:Slin_5269 fibronectin type III domain protein; PFAM: Fibronectin, type III; SPTR:  uncharacterized protein; PFAM: Fibronectin type III domain
YP_004345253.1	KEGG: fjo:Fjoh_2931 hypothetical protein; SPTR:  uncharacterized protein
YP_004345254.1	InterPro IPR007803; KEGG: cpi:Cpin_5906 aspartyl/asparaginyl beta-hydroxylase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase; SPTR: Aspartyl/Asparaginyl beta-hydroxylase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase
YP_004345255.1	KEGG: cat:CA2559_05140 hypothetical protein; SPTR:  uncharacterized protein
YP_004345256.1	COGs: COG0412 Dienelactone hydrolase; KEGG: cpi:Cpin_1370 dienelactone hydrolase; SPTR: Dienelactone hydrolase; PFAM: Dienelactone hydrolase
YP_004345257.1	COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: chu:CHU_1032 lysophospholipase; PFAM: Lipase, GDSL; SPTR:  uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004345258.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR015377:IPR002529:IPR005959; KEGG: rbi:RB2501_15884 fumarylacetoacetase; PFAM: Fumarylacetoacetase, C-terminal-like; Fumarylacetoacetase, N-terminal; PRIAM: Fumarylacetoacetase; SPTR: Fumarylacetoacetase; TIGRFAM: Fumarylacetoacetase; PFAM: Domain of unknown function (DUF1969); Fumarylacetoacetate (FAA) hydrolase; TIGRFAM: fumarylacetoacetase
YP_004345259.1	KEGG: nve:NEMVE_v1g238912 hypothetical protein; SPTR:  type I site-specific deoxyribonuclease, HsdR family subfamily
YP_004345260.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterProIPR006674:IPR007685:IPR004095:IPR003607:IPR 004811; KEGG: phe:Phep_1204 RelA/SpoT family protein; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS; PRIAM: GTP diphosphokinase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: RelA/SpoT family protein; TIGRFAM: RelA/SpoT protein; PFAM: HD domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_004345261.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: rbi:RB2501_01780 ferric uptake regulation protein; PFAM: Ferric-uptake regulator; SPTR: Ferric uptake regulation protein; PFAM: Ferric uptake regulator family
YP_004345262.1	InterPro IPR002645:IPR003658; KEGG: chu:CHU_1702 anti-anti-sigma regulatory factor; PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004345263.1	COGs: COG0104 Adenylosuccinate synthase; HAMAP: Adenylosuccinate synthetase; InterPro IPR001114; KEGG: coc:Coch_0248 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: Adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_004345264.1	KEGG: pdi:BDI_2389 hypothetical protein; SPTR:  uncharacterized protein
YP_004345265.1	KEGG: bga:BG0355 hypothetical protein; SPTR:  uncharacterized protein
YP_004345266.1	KEGG: ngr:NAEGRDRAFT_50651 hypothetical protein; SPTR: Predicted protein
YP_004345267.1	KEGG: sli:Slin_4128 serine/threonine protein kinase; SPTR: KWG Leptospira repeat protein
YP_004345268.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: caa:Caka_3044 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR:  uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004345270.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616:IPR020617:IPR002155; KEGG: phe:Phep_3723 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acyltransferase; SPTR: Acetyl-CoA C-acyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004345271.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108:IPR001753; KEGG: chu:CHU_3591 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; SPTR: 3-hydroxyacyl-CoA dehydrogenase; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004345272.1	InterPro IPR000835; KEGG: sli:Slin_4426 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_004345273.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: rmr:Rmar_1553 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD
YP_004345274.1	KEGG: bba:Bd1651 hypothetical protein; SPTR:  uncharacterized protein
YP_004345275.1	COGs: COG5587 conserved hypothetical protein; InterPro IPR012808; KEGG: zpr:ZPR_1595 hypothetical protein; PFAM: Conserved hypothetical protein CHP02453; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02453; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: conserved hypothetical protein TIGR02453
YP_004345276.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: fps:FP1112 Xaa-Pro dipeptidyl-peptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; PRIAM: Dipeptidyl-peptidase IV; SPTR: Xaa-Pro dipeptidyl-peptidase; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_004345277.1	COGs: COG3177 conserved hypothetical protein; InterPro IPR001387:IPR003812; KEGG: dsa:Desal_0157 filamentation induced by cAMP protein Fic; PFAM: Filamentation induced by cAMP/death on curing, related; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Uncharacterized conserved protein; PFAM: Helix-turn-helix; Fic/DOC family
YP_004345278.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: cat:CA2559_05225 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; Transketolase, C-terminal; PRIAM: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); SPTR: 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004345279.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR020573:IPR001451; KEGG: rbi:RB2501_15184 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; SPTR: UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004345280.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822:IPR001932; KEGG: chu:CHU_2179 sigma factor regulation protein; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR:  regulatory protein; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004345281.1	KEGG: cat:CA2559_03690 hypothetical protein; SPTR:  uncharacterized protein
YP_004345282.1	KEGG: chu:CHU_1568 hypothetical protein; SPTR:  uncharacterized protein
YP_004345283.1	KEGG: chu:CHU_1567 hypothetical protein; SPTR:  uncharacterized protein
YP_004345284.1	COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462; KEGG: coc:Coch_2102 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR:  phosphatidylserine synthase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004345285.1	COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: cpi:Cpin_6927 phosphoribosylformylglycinamidine synthase, PurS; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; SPTR: Phosphoribosylformylglycinamidine synthase, purS; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein
YP_004345286.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: rbi:RB2501_00831 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; PRIAM: Aldehyde dehydrogenase (NAD(+)); SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase
YP_004345287.1	KEGG: fjo:Fjoh_4571 hypothetical protein; SPTR:  uncharacterized protein
YP_004345288.1	InterPro IPR000504; KEGG: sus:Acid_1007 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_004345289.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_05265  enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; SPTR:  enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase
YP_004345290.1	KEGG: fbc:FB2170_12371 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2891)
YP_004345291.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; HAMAP: DNA polymerase IV; InterPro IPR001126; KEGG: fjo:Fjoh_0883 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family
YP_004345292.1	KEGG: cat:CA2559_03495 hypothetical protein; SPTR:  uncharacterized protein
YP_004345293.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_5681 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345294.1	KEGG: cat:CA2559_02565 hypothetical protein; SPTR:  uncharacterized protein
YP_004345295.1	KEGG: cat:CA2559_05580  membrane-anchored cell surface protein; SPTR: Leucine-rich repeat (LRR) protein
YP_004345296.1	COGs: COG0102 Ribosomal protein L13; InterPro IPR005822:IPR005823; KEGG: fbc:FB2170_03175 50S ribosomal protein L13; PFAM: Ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_004345297.1	COGs: COG0103 Ribosomal protein S9; InterPro IPR000754; KEGG: zpr:ZPR_0515 30S ribosomal protein S9; PFAM: Ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_004345298.1	COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR005706; KEGG: bvu:BVU_1634 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_004345299.1	COGs: COG0264 Translation elongation factor Ts; HAMAP: Translation elongation factor EFTs/EF1B; InterPro IPR000449:IPR014039:IPR001816; KEGG: phe:Phep_0113 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; SPTR: Elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_004345300.1	KEGG: phe:Phep_0658 hypothetical protein; SPTR:  uncharacterized protein
YP_004345301.1	COGs: COG0528 Uridylate kinase; InterPro IPR001048:IPR015963; KEGG: phe:Phep_0115 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase; PRIAM: UMP kinase; SPTR: Uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Amino acid kinase; TIGRFAM: uridylate kinase
YP_004345302.1	COGs: COG0233 Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; InterPro IPR002661:IPR015998; KEGG: cat:CA2559_04050 ribosome recycling factor; PFAM: Ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_004345303.1	KEGG: clu:CLUG_02166 hypothetical protein; SPTR:  uncharacterized protein
YP_004345304.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: fjo:Fjoh_0699 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent helicase; PFAM: Domain of unknown function DUF83; UvrD/REP helicase
YP_004345305.1	KEGG: chu:CHU_0522 hypothetical protein; SPTR:  uncharacterized protein
YP_004345306.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_5340 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Probable cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004345307.1	KEGG: dfe:Dfer_4142 hypothetical protein; SPTR:  uncharacterized protein
YP_004345308.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: rbi:RB2501_15704 sensory transduction regulatory protein; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Sensory transduction regulatory protein; PFAM: Histidine kinase
YP_004345309.1	COGs: COG2378 transcriptional regulator protein; KEGG: cpi:Cpin_1199  transcriptional regulator protein; SPTR:  uncharacterized protein
YP_004345310.1	KEGG: dfe:Dfer_5728 Ig family protein; SPTR: Ig family protein
YP_004345311.1	KEGG: dfe:Dfer_4535 hypothetical protein; SPTR: Probable aggregation factor core protein MAFp3, isoform C
YP_004345312.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cat:CA2559_05310 enoyl-CoA hydratase/isomerase PhaB; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: phenylacetate degradation probable enoyl-CoA hydratase paaB
YP_004345313.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: cat:CA2559_05300 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004345314.1	COGs: COG1764 redox protein regulator of disulfide bond formation; InterPro IPR003718:IPR019904; KEGG: phe:Phep_2339 OsmC family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: Peroxiredoxin; TIGRFAM: Peroxiredoxin, osmotically inducible protein C, subgroup; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily
YP_004345315.1	KEGG: lme:LEUM_1427 hypothetical protein; SPTR:  uncharacterized protein
YP_004345316.1	KEGG: cyh:Cyan8802_3148 tetratricopeptide TPR_2 repeat protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004345317.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cpi:Cpin_5443 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; manually curated; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345318.1	COGs: COG0205 6-phosphofructokinase; HAMAP: 6-phosphofructokinase; InterPro IPR000023:IPR012828; KEGG: zpr:ZPR_2751 6-phosphofructokinase; PFAM: Phosphofructokinase; PRIAM: 6-phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_004345319.1	COGs: COG0105 Nucleoside diphosphate kinase; HAMAP: Nucleoside diphosphate kinase, core; InterPro IPR001564; KEGG: fps:FP1409 nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; PRIAM: Nucleoside-diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; SPTR: Nucleoside diphosphate kinase; manually curated; PFAM: Nucleoside diphosphate kinase
YP_004345320.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR007167; KEGG: zpr:ZPR_0240 iron dependent repressor; PFAM: Iron dependent repressor; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor; SPTR: Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_004345321.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127; KEGG: gwc:GWCH70_1397 periplasmic solute binding protein; PFAM: ABC transporter metal-binding lipoprotein; SPTR: Periplasmic solute binding protein; PFAM: Periplasmic solute binding protein family
YP_004345322.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003439:IPR003593; KEGG: lmy:LM5923_2002 hypothetical protein; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Manganese ABC transporter; PFAM: ABC transporter
YP_004345323.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: chu:CHU_2027 Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC-3; SPTR: Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC 3 transport family
YP_004345324.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: chu:CHU_2028 Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC-3; SPTR: Mn2+/Zn2+ ABC transporter, permease; PFAM: ABC 3 transport family
YP_004345325.1	KEGG: chu:CHU_2632 hypothetical protein; SPTR:  uncharacterized protein
YP_004345326.1	InterPro IPR000086; KEGG: fjo:Fjoh_2393 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR:  uncharacterized protein; PFAM: NUDIX domain
YP_004345327.1	KEGG: pyo:PY00325 hypothetical protein; SPTR: Conserved hypothetical helicase
YP_004345328.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 001241:IPR011557; KEGG: cat:CA2559_06825 DNA gyrase subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, subunit B; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_004345329.1	KEGG: cat:CA2559_03690 hypothetical protein; SPTR:  uncharacterized protein
YP_004345330.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: coc:Coch_0238 peroxiredoxin; PFAM: Glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase
YP_004345331.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dma:DMR_43090  outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004345332.1	KEGG: sli:Slin_6974 hypothetical protein; SPTR:  uncharacterized protein
YP_004345333.1	KEGG: pdi:BDI_2767 hypothetical protein; SPTR: TPR domain protein
YP_004345334.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: tye:THEYE_A1015 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inediphosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_004345335.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142:IPR004634:IPR004635; KEGG: phe:Phep_3074 signal peptide peptidase SppA, 67K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA; TIGRFAM: Peptidase S49, protease IV; Peptidase S49, SppA; PFAM: Peptidase S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type
YP_004345336.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; InterPro IPR006094:IPR011601:IPR003170; KEGG: cpi:Cpin_6574 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004345337.1	KEGG: nvi:100118457 similar to mediator of DNA damage checkpoint 1; SPTR: Predicted protein
YP_004345338.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: cpi:Cpin_0066 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004345339.1	COGs: COG2808 Transcriptional regulator; InterPro IPR007396; KEGG: chu:CHU_3512 transcriptional regulator; PFAM: Negative transcriptional regulator; SPTR: Transcriptional regulator; PFAM:  FMN-binding domain
YP_004345340.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; KEGG: bfs:BF1186  iron-related ABC transport periplasmic binding protein; SPTR: Iron(III) ABC transporter periplasmic iron-binding protein; PFAM: Periplasmic binding protein
YP_004345341.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: fjo:Fjoh_0082 transport system permease; PFAM: Bacterial transport system permease; SPTR: Transport system permease; PFAM: FecCD transport family
YP_004345342.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: paa:Paes_1297 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004345343.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523:IPR003593:IPR004482; KEGG: chu:CHU_0354 magnesium chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein
YP_004345344.1	InterPro IPR013216; KEGG: sli:Slin_3138 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004345345.1	KEGG: gfo:GFO_3249 hypothetical protein; SPTR:  uncharacterized protein
YP_004345346.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: phe:Phep_3302 RNA polymerase sigma factor, sigma-70 family; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345347.1	KEGG: fjo:Fjoh_1273 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004345348.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910; KEGG: fps:FP1510 TonB-dependent outer membrane receptorprecursor; PFAM: TonB-dependent receptor, plug; SPTR: Probable TonB-dependent outer membrane receptorprecursor
YP_004345349.1	COGs: COG2077 Peroxiredoxin; HAMAP: thiol peroxidase; InterPro IPR013740; KEGG: fps:FP1594 thiol peroxidase; PFAM: Redoxin; SPTR: Peroxiredoxin; PFAM: Redoxin
YP_004345350.1	COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: abi:Aboo_1400 phospholipase/carboxylesterase; SPTR:  lipoprotein; PFAM: Esterase PHB depolymerase
YP_004345351.1	COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: fjo:Fjoh_4769 hypothetical protein; PFAM: Protein of unknown function DUF752; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF752)
YP_004345352.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: fps:FP2410 major facilitator superfamily permease; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator superfamily (MFS) permease; PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_004345353.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060; KEGG: pjd:Pjdr2_5566 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345354.1	InterPro IPR000835; KEGG: sli:Slin_6318 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: MarR family transcriptional regulator; PFAM: MarR family
YP_004345355.1	KEGG: fbc:FB2170_15683 hypothetical protein; SPTR:  uncharacterized protein
YP_004345356.1	InterPro IPR002931; KEGG: fbc:FB2170_02335 hypothetical protein; PFAM: Transglutaminase-like; SPTR:  uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_004345357.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR001440:IPR011652:IPR019734; KEGG: chu:CHU_2455 glucosyltransferase-S; PFAM: Tetratricopeptide TPR-1; MORN variant; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat; MORN repeat variant
YP_004345358.1	KEGG: sun:SUN_0123 elongation factor Tu; SPTR: Elongation factor Tu
YP_004345359.1	InterPro IPR000305; KEGG: paa:Paes_0181 excinuclease ABC, C subunit domain protein; PFAM: Excinuclease ABC, C subunit, N-terminal; SPTR:  uncharacterized protein; manually curated; PFAM: GIY-YIG catalytic domain
YP_004345360.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: fba:FIC_00042 dihydrofolate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central; PRIAM: Tetrahydrofolate synthase; SPTR: Dihydrofolate synthase; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_004345361.1	KEGG: fbc:FB2170_07674 hypothetical protein; SPTR:  uncharacterized protein
YP_004345362.1	KEGG: vpr:Vpar_1339 TonB family protein; SPTR: TonB family protein
YP_004345363.1	KEGG: pfh:PFHG_01464 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004345364.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: fps:FP0543  biopolymer transporter; PFAM: Biopolymer transport protein ExbD/TolR; SPTR:  biopolymer transporter; PFAM: Biopolymer transport protein ExbD/TolR; TC 2.C.1.1.1
YP_004345365.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: fps:FP0542  biopolymer transporter; PFAM: MotA/TolQ/ExbB proton channel; SPTR:  biopolymer transporter; PFAM: MotA/TolQ/ExbB proton channel family; TC 2.C.1.1.1
YP_004345366.1	COGs: COG3004 Na+/H+ antiporter; HAMAP: Na+/H+ antiporter NhaA; InterPro IPR004670; KEGG: fps:FP1774 Na+/H+ antiporter; PFAM: Na+/H+ antiporter NhaA; SPTR: Na(+)/H(+) antiporter nhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA; TC 2.A.33.1.1
YP_004345367.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: cat:CA2559_06630 Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; SPTR: Glu/Leu/Phe/Val dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004345368.1	COGs: COG2377 molecular chaperone distantly related to HSP70-fold metalloprotease; InterPro IPR005338; KEGG: fba:FIC_01306 anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase; SPTR: Anhydro-N-acetylmuramic acid kinase; PFAM: Uncharacterised protein family (UPF0075)
YP_004345369.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: fbc:FB2170_17441 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; PRIAM: Butyryl-CoA dehydrogenase; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004345370.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713:IPR013221:IPR004101:IPR005863; KEGG: pdi:BDI_3366 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate- D-alanyl-D -alanyl ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; PRIAM:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a lanineligase; SPTR:UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-al anineligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, glutamate ligase domain; Mur ligase, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_004345371.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR005532; KEGG: cpi:Cpin_1181 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR:  membrane protein; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldJ
YP_004345372.1	InterPro IPR019861; KEGG: sli:Slin_5231 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345373.1	KEGG: fjo:Fjoh_1556 hypothetical protein; SPTR:  uncharacterized protein
YP_004345374.1	KEGG: phe:Phep_4061 hypothetical protein; SPTR:  uncharacterized protein
YP_004345375.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; InterPro IPR003526; KEGG: sli:Slin_0015 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_004345376.1	InterPro IPR000182; KEGG: cpi:Cpin_2477 acyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acyltransferase
YP_004345377.1	COGs: COG0502 Biotin synthase; HAMAP: Biotin synthase; InterPro IPR007197:IPR010722:IPR006638:IPR002684; KEGG: gfo:GFO_3566 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthase; TIGRFAM: Biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase
YP_004345378.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839; KEGG: cpi:Cpin_2998 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_004345379.1	COGs: COG1278 Cold shock protein; InterPro IPR002059:IPR011129; KEGG: dfe:Dfer_0895 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004345380.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: sli:Slin_6443 transcriptional regulator, TetR family; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: TetR family transcriptional regulator; PFAM: Bacterial regulatory proteins, tetR family
YP_004345381.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: cpi:Cpin_3983 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004345382.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cpi:Cpin_3982 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR:  uncharacterized protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004345383.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: cpi:Cpin_3981 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family
YP_004345384.1	KEGG: sli:Slin_6600 hypothetical protein; SPTR:  uncharacterized protein
YP_004345385.1	KEGG: fba:FIC_02508 hypothetical protein; SPTR: KWG Leptospira repeat domain protein
YP_004345386.1	KEGG: phe:Phep_2460 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3050)
YP_004345387.1	KEGG: coc:Coch_0245 hypothetical protein; SPTR:  uncharacterized protein
YP_004345388.1	COGs: COG3607 lactoylglutathione lyase; InterPro IPR004360; KEGG: fjo:Fjoh_1709 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004345389.1	KEGG: bfs:BF2036 hypothetical protein; SPTR: Predicted protein
YP_004345390.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: cpi:Cpin_1134 beta-lactamase; PFAM: Beta-lactamase-related; SPTR:  uncharacterized protein; PFAM: Beta-lactamase; Domain of unknown function (DUF3471)
YP_004345391.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661:IPR003594; KEGG: fjo:Fjoh_1344 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004345392.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_1345 LytTR family two component transcriptional regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004345393.1	KEGG: pdi:BDI_1148 UDP-N-acetylenolpyruvoylglucosamine reductase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004345394.1	KEGG: aar:Acear_1389 AAA ATPase; SPTR: AAA ATPase
YP_004345395.1	KEGG: pdi:BDI_0258 hypothetical protein; SPTR:  uncharacterized protein
YP_004345396.1	COGs: COG4260  virion core protein (lumpy skin disease virus); KEGG: cpi:Cpin_0766  virion core protein (lumpy skin disease virus)-like protein; SPTR:  uncharacterized protein; PFAM: SPFH domain / Band 7 family
YP_004345397.1	KEGG: cpc:Cpar_0309 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Tim44-like domain
YP_004345398.1	KEGG: cpi:Cpin_0522 cytochrome-c oxidase; SPTR: Cytochrome-c oxidase
YP_004345399.1	KEGG: dsa:Desal_1744 acid phosphatase (class B); SPTR: Beta-lactamase
YP_004345400.1	KEGG: sso:SSO0051 hypothetical protein; SPTR:  uncharacterized protein
YP_004345401.1	COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: cpi:Cpin_6779 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Glyoxylate reductase; SPTR:  glycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004345402.1	KEGG: dfe:Dfer_5567 hypothetical protein; SPTR:  uncharacterized protein
YP_004345403.1	COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; KEGG: gfo:GFO_2677 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily
YP_004345404.1	KEGG: tet:TTHERM_00756070 hypothetical protein; SPTR:  uncharacterized protein
YP_004345405.1	KEGG: dre:553957 interleukin 10; SPTR: Interleukin 10
YP_004345406.1	KEGG: tva:TVAG_188230 surface antigen BspA-like; SPTR:  uncharacterized protein
YP_004345407.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: btk:BT9727_0165 alcohol dehydrogenase, zinc containing; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; PRIAM: NADPH:quinone reductase; SPTR: Alcohol dehydrogenase, zinc containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004345408.1	COGs: COG3668 Plasmid stabilization system protein; InterPro IPR007712; KEGG: fjo:Fjoh_4525 plasmid stabilization system protein; PFAM: Plasmid stabilisation system; SPTR: Plasmid stabilization system; PFAM: Plasmid stabilisation system protein
YP_004345409.1	InterPro IPR005360; KEGG: fjo:Fjoh_4526 CopG/Arc/MetJ family transcriptional regulator; SPTR:  transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM:  addiction module antidote protein, CC2985; PFAM: Uncharacterised protein family (UPF0156); TIGRFAM:  addiction module antidote protein, CC2985 family
YP_004345410.1	InterPro IPR005135; KEGG: cts:Ctha_2667 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase
YP_004345411.1	InterPro IPR019587; KEGG: phe:Phep_2101 hypothetical protein; PFAM: Polyketide cyclase/dehydrase; SPTR:  uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_004345412.1	KEGG: dpo:Dpse_GA25636 GA25636 gene product from transcript GA25636-RA; SPTR:  uncharacterized protein
YP_004345413.1	COGs: COG1078 HD superfamily phosphohydrolase; InterPro IPR006674:IPR003607; KEGG: phe:Phep_4281 metal-dependent phosphohydrolase HD sub domain protein; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Phosphohydrolase; PFAM: HD domain
YP_004345414.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR013973; KEGG: gfo:GFO_1778 two-component response transcriptional regulator; PFAM: PglZ domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component response regulator; PFAM: PglZ domain; Response regulator receiver domain
YP_004345415.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: pru:PRU_1898 YjeE family ATPase; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_004345416.1	COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886:IPR007698; KEGG: phe:Phep_4284 alanine dehydrogenase/PNT domain protein; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; PRIAM: Alanine dehydrogenase; SPTR: Alanine dehydrogenase/PNT domain protein; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase
YP_004345417.1	KEGG: fbc:FB2170_09931 outer membrane protein, OmpA/MotB family; SPTR: Outer membrane protein, OmpA/MotB family
YP_004345418.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: mmg:MTBMA_c12200 sensory transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Predicted sensory transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345419.1	COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; InterPro IPR014001; KEGG: phe:Phep_3342 DEAD-like helicase; SMART: DEAD-like helicase, N-terminal; SPTR: DEAD-like helicase; PFAM: Type III restriction enzyme, res subunit
YP_004345420.1	KEGG: tet:TTHERM_00840070 Protein kinase domain containing protein
YP_004345421.1	KEGG: pfh:PFHG_00461 conserved hypothetical protein
YP_004345422.1	COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: pha:PSHAa1625 ABC-type Na+ efflux pump, permease component; SPTR:  ABC-type Na+ efflux pump, permease component
YP_004345423.1	COGs: COG4555 ABC-type Na+ transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: ote:Oter_1528 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Monosaccharide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004345424.1	KEGG: fba:FIC_01718 hypothetical protein; SPTR:  uncharacterized protein
YP_004345425.1	KEGG: chu:CHU_2253 hypothetical protein; SPTR:  uncharacterized protein
YP_004345426.1	KEGG: chu:CHU_2253 hypothetical protein; SPTR:  uncharacterized protein
YP_004345427.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: chu:CHU_3430 peptidylprolyl isomerase (FKBP-type peptidyl-prolyl cis-trans isomerase); PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004345428.1	KEGG: dfe:Dfer_0200 hypothetical protein; SPTR:  uncharacterized protein; PFAM: S1/P1 Nuclease
YP_004345429.1	COGs: COG2045 Phosphosulfolactate phosphohydrolase; HAMAP: 2-phosphosulfolactate phosphatase; InterPro IPR005238; KEGG: phe:Phep_0407 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; SPTR: 2-phosphosulfolactate phosphatase; PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase
YP_004345430.1	KEGG: dfe:Dfer_5078 hypothetical protein; SPTR:  uncharacterized protein
YP_004345431.1	KEGG: gpb:HDN1F_35110 hypothetical protein; SPTR: Lipoprotein
YP_004345432.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; HAMAP: Excinuclease ABC, B subunit; InterProIPR006935:IPR001650:IPR001943:IPR014001:IPR 004807; KEGG: fbc:FB2170_00910 excinuclease ABC subunit B; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: UvrABC system protein B; TIGRFAM: Excinuclease ABC, B subunit; manually curated; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_004345433.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: cpi:Cpin_1175 integral membrane protein TerC; PFAM: Integral membrane protein TerC; SPTR: Integral membrane protein TerC; TIGRFAM: integral membrane protein, YkoY family; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, YkoY family
YP_004345434.1	KEGG: chu:CHU_0597 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004345435.1	KEGG: cpi:Cpin_4166 hypothetical protein; SPTR:  uncharacterized protein
YP_004345436.1	KEGG: mbr:MONBRDRAFT_33819 hypothetical protein; SPTR: Predicted protein
YP_004345437.1	KEGG: mbr:MONBRDRAFT_13061 hypothetical protein; SPTR: Hoglet
YP_004345439.1	KEGG: cal:CaO19.4906 low complexity, serine-rich orf; weak similarity to S. cerevisiae MTL1 mechanosensor of cell wall stress; SPTR:  uncharacterized protein
YP_004345440.1	COGs: COG1239 Mg-chelatase subunit ChlI; KEGG: fjo:Fjoh_4336 Mg-chelatase subunit ChlI-like protein; SPTR: Mg-chelatase subunit ChlI-like protein
YP_004345441.1	COGs: COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain; KEGG: fjo:Fjoh_4337 von Willebrand factor type A (vWA)domain-containing protein; SPTR: Uncharacterized protein with a von Willebrand factor type A (VWA) domain-like protein
YP_004345442.1	KEGG: lin:lin2547 hypothetical protein; SPTR: Hydrolase, alpha/beta hydrolase fold family
YP_004345443.1	InterPro IPR004360; KEGG: fjo:Fjoh_0463 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR:  uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004345444.1	HAMAP: UPF0310 protein; InterPro IPR002740; KEGG: zpr:ZPR_1565 hypothetical protein; PFAM: Uncharacterised protein family UPF0310; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF55
YP_004345445.1	InterPro IPR000835; KEGG: fjo:Fjoh_0464 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcription regulator; PFAM: MarR family
YP_004345446.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cpi:Cpin_3628 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004345447.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: dfe:Dfer_5361 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; SPTR:  two-component system sensor histidine kinase; PFAM: Histidine kinase
YP_004345448.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: fjo:Fjoh_2105 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Possible beta-lactamase; PFAM: Beta-lactamase; Domain of unknown function (DUF3471)
YP_004345449.1	KEGG: tps:THAPSDRAFT_4184 hypothetical protein; SPTR: Quinoprotein (ISS)
YP_004345450.1	KEGG: cpi:Cpin_4300 hypothetical protein; SPTR:  uncharacterized protein
YP_004345451.1	COGs: COG0025 NhaP-type Na+/H+ and K+/H+ antiporter; InterPro IPR006153:IPR004705; KEGG: chu:CHU_3839 sodium/hydrogen antiporter; PFAM: Cation/H+ exchanger; SPTR: Sodium/hydrogen antiporter; TIGRFAM: Na+/H+ exchanger, yjcE-like, bacteria; PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form; TC 2.A.36
YP_004345452.1	KEGG: ajs:Ajs_1500 hypothetical protein; SPTR:  uncharacterized protein
YP_004345453.1	InterPro IPR001304; KEGG: pmn:PMN2A_1389 C-type lectin; PFAM: C-type lectin; SPTR: C-type lectin; PFAM: Lectin C-type domain
YP_004345454.1	InterPro IPR000005:IPR018060; KEGG: cpi:Cpin_7131 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR:  uncharacterized protein; PFAM: AraC-like ligand binding domain
YP_004345455.1	KEGG: dfe:Dfer_3748 hypothetical protein; SPTR:  uncharacterized protein
YP_004345456.1	KEGG: cat:CA2559_12073 hypothetical protein; SPTR:  uncharacterized protein
YP_004345457.1	COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR007197; KEGG: fba:FIC_02203 hypothetical protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein
YP_004345458.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: fps:FP2310 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004345459.1	KEGG: sli:Slin_3165 hypothetical protein; SPTR:  uncharacterized protein
YP_004345460.1	KEGG: sli:Slin_3165 hypothetical protein; SPTR:  uncharacterized protein
YP_004345461.1	COGs: COG3220 conserved hypothetical protein; InterPro IPR007801; KEGG: sli:Slin_3166 protein of unknown function DUF692; PFAM: Protein of unknown function DUF692; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF692)
YP_004345462.1	KEGG: edi:EDI_091720 hypothetical protein; SPTR:  uncharacterized protein
YP_004345463.1	InterPro IPR018958; KEGG: amd:AMED_9204 hypothetical protein; PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; SPTR:  uncharacterized protein
YP_004345464.1	KEGG: tet:TTHERM_00402180 Eukaryotic aspartyl protease; SPTR: Transcriptional regulator, XRE family
YP_004345465.1	KEGG: gur:Gura_0834 S23 ribosomal protein; SPTR: S23 ribosomal protein; PFAM: S23 ribosomal protein
YP_004345466.1	COGs: COG4861 conserved hypothetical protein; KEGG: zpr:ZPR_4120 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2186)
YP_004345467.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: cpi:Cpin_1536 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetate (FAA) hydrolase
YP_004345468.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520:IPR006055:IPR006054; KEGG: cat:CA2559_13583  DNA polymerase III epsilon chain; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; SPTR:  DNA polymerase III epsilon chain; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004345469.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: chu:CHU_1561 OmpA family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: Outer membrane protein, OmpA family; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004345470.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078; KEGG: cat:CA2559_07590 lipoamide acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme
YP_004345471.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: chu:CHU_1044 b-glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: B-glycosyltransferase, glycosyltransferase 2 protein; PFAM: Glycosyl transferase 2
YP_004345472.1	COGs: COG0251  translation initiation inhibitor yjgF family; InterPro IPR006175:IPR006056; KEGG: chu:CHU_3374 endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP
YP_004345473.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR000991:IPR006221; KEGG: fbc:FB2170_16286 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_004345474.1	KEGG: bss:BSUW23_10375  glycosyltransferase; SPTR:  glycosyltransferase
YP_004345475.1	KEGG: bur:Bcep18194_C7718 hypothetical protein; SPTR:  uncharacterized protein
YP_004345476.1	KEGG: dfe:Dfer_4482 hypothetical protein; SPTR:  uncharacterized protein
YP_004345477.1	COGs: COG4185 conserved hypothetical protein; KEGG: dfe:Dfer_4483 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Zeta toxin
YP_004345478.1	COGs: COG4731 conserved hypothetical protein; InterPro IPR019223; KEGG: cat:CA2559_09958 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2147)
YP_004345479.1	KEGG: lbc:LACBIDRAFT_308994 hypothetical protein; SPTR:  uncharacterized protein
YP_004345480.1	COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR003817:IPR004428; KEGG: phe:Phep_0043 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase proenzyme; TIGRFAM: Phosphatidylserine decarboxylase-related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein
YP_004345481.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: fjo:Fjoh_2598 phosphatidate cytidylyltransferase; PFAM: Phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase
YP_004345482.1	COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003959:IPR000642:IPR003593:IPR005936; KEGG: zpr:ZPR_0808 cell division protease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; PRIAM: Microtubule-severing ATPase; SMART: ATPase, AAA+ type, core; SPTR:  transmembrane AAA-metalloprotease FtsH; TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_004345483.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: sli:Slin_3002 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap protein family; TIGRFAM: Iojap-related protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_004345484.1	COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143:IPR004408; KEGG: aas:Aasi_1504 hypothetical protein; PFAM: Biotin/lipoate A/B protein ligase; SPTR:  uncharacterized protein; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region
YP_004345485.1	KEGG: fbc:FB2170_16391 hypothetical protein; SPTR:  uncharacterized protein
YP_004345486.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR000836:IPR004467; KEGG: phe:Phep_1463 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: Orotate phosphoribosyl transferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase
YP_004345487.1	InterPro IPR000086; KEGG: phe:Phep_1465 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004345488.1	InterPro IPR011467; KEGG: fjo:Fjoh_1722 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004345489.1	COGs: COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; InterPro IPR002130; KEGG: phe:Phep_0652 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_004345490.1	COGs: COG4365 conserved hypothetical protein; HAMAP: UPF0747 protein; InterPro IPR011199; KEGG: dfe:Dfer_3548 hypothetical protein; PFAM: Uncharacterised conserved protein UCP012535; SPTR: UPF0747 protein Dfer_3548; PFAM: Uncharacterized protein conserved in bacteria (DUF2317)
YP_004345491.1	InterPro IPR012910; KEGG: fjo:Fjoh_0118 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor, plug; SPTR:  uncharacterized protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004345492.1	COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: cpi:Cpin_0416 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Peptide chain release factor; PFAM: RF-1 domain
YP_004345493.1	InterPro IPR001845; KEGG: chu:CHU_1513 ArsR family transcriptional regulator; SMART: HTH transcriptional regulator, ArsR; SPTR: ArsR family transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family
YP_004345494.1	KEGG: rop:ROP_49030 protease II; SPTR:  uncharacterized protein
YP_004345495.1	KEGG: sno:Snov_3755 drug resistance transporter, EmrB/QacA subfamily; SPTR: Drug resistance transporter, EmrB/QacA subfamily
YP_004345496.1	COGs: COG0501 Zn-dependent protease with chaperone function; HAMAP: protease htpX; InterPro IPR001915; KEGG: coc:Coch_1211 peptidase M48 Ste24p; PFAM: Peptidase M48; SPTR: Protease HtpX homolog; PFAM: Peptidase M48
YP_004345497.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: coc:Coch_1210 LemA family protein; PFAM: LemA; SPTR: LemA family protein; PFAM: LemA family
YP_004345498.1	InterPro IPR001845; KEGG: lbl:LBL_0343 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004345499.1	KEGG: phe:Phep_2583 hypothetical protein; SPTR:  uncharacterized protein
YP_004345500.1	KEGG: gym:GYMC10_4442 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DU1801)
YP_004345501.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: fba:FIC_01242 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR:  uncharacterized protein
YP_004345502.1	KEGG: cth:Cthe_1654 hypothetical protein; SPTR:  uncharacterized protein
YP_004345503.1	KEGG: fjo:Fjoh_1027 hypothetical protein; SPTR:  uncharacterized protein
YP_004345504.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001440:IPR010822:IPR019734:IPR001932; KEGG: drm:Dred_1841 stage II sporulation E family protein; PFAM: Sporulation stage II, protein E C-terminal; Tetratricopeptide TPR-1; SMART: Protein phosphatase 2C-related; Tetratricopeptide repeat; SPTR: Serine/threonine protein kinases, ; PFAM: Stage II sporulation protein E (SpoIIE); Tetratricopeptide repeat
YP_004345505.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: lbf:LBF_0991 acyl-CoA hydrolase; PFAM: Thioesterase superfamily; SPTR: Long-chain acyl-CoA thioester hydrolase; PFAM: Thioesterase superfamily
YP_004345506.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004345507.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789; KEGG: fjo:Fjoh_3976 LytTR family two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004345508.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559; KEGG: nve:NEMVE_v1g224544 hypothetical protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: GGDEF domain protein; PFAM: Histidine kinase
YP_004345509.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158:IPR005129:IPR006099; KEGG: fjo:Fjoh_2332 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; ArgK protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; PFAM: ArgK protein; Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_004345510.1	KEGG: cat:CA2559_00780 GTP cyclohydrolase I; SPTR:  uncharacterized protein
YP_004345511.1	InterPro IPR000859:IPR000601:IPR002884; KEGG: cat:CA2559_00775 iron-regulated protein FrpC; PFAM: PKD; CUB; Proprotein convertase, P; SMART: PKD; CUB; SPTR:  uncharacterized protein; PFAM: PKD domain; CUB domain
YP_004345512.1	KEGG: lrl:LC705_00865 hypothetical protein; SPTR:  uncharacterized protein
YP_004345513.1	COGs: COG2820 Uridine phosphorylase; InterPro IPR000845; KEGG: coc:Coch_1827 purine or other phosphorylase 1; PFAM: Nucleoside phosphorylase; SPTR: Purine or other phosphorylase 1; PFAM: Phosphorylase superfamily
YP_004345514.1	KEGG: cpi:Cpin_2631 hypothetical protein; SPTR:  uncharacterized protein
YP_004345515.1	COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453:IPR008136:IPR008135; KEGG: sli:Slin_1357 competence/damage-inducible protein CinA; PFAM: CinA, C-terminal; Molybdopterin binding; SPTR: Competence/damage-inducible protein CinA; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain
YP_004345516.1	COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: cat:CA2559_13563 ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_004345517.1	HAMAP: Ribosomal protein L33; InterPro IPR001705; KEGG: bth:BT_0915 50S ribosomal protein L33; PFAM: Ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_004345518.1	KEGG: phe:Phep_3523 hypothetical protein; SPTR:  uncharacterized protein
YP_004345519.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR013822:IPR000897:IPR003593:IPR004390; KEGG: pdi:BDI_0941 recognition particle-docking protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; SMART: ATPase, AAA+ type, core; SPTR:  uncharacterized protein; TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_004345520.1	KEGG: ote:Oter_4064 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Chloroplast import component protein (Tic20)
YP_004345521.1	KEGG: cat:CA2559_07440 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; SPTR: 2-amino-3-carboxylmuconate-6-semialdehyde decarboxylase; PFAM: Amidohydrolase
YP_004345522.1	KEGG: cdu:CD36_22410 acetyltransferase complex component, SPTR: Protein ycf2
YP_004345523.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: ppu:PP_2126 LuxR family DNA-binding response regulator; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: DNA-binding response regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family
YP_004345524.1	KEGG: fjo:Fjoh_4721 endonuclease I; SPTR:  uncharacterized protein
YP_004345525.1	COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: cpi:Cpin_7224 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: Hemin-binding periplasmic protein; PFAM: Periplasmic binding protein
YP_004345526.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dra:DR_B0015 hemin ABC transporter, permease, PFAM: Bacterial transport system permease; SPTR: Hemin ABC superfamily ATP binding cassette transporter, membrane protein; PFAM: FecCD transport family
YP_004345527.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439:IPR003593; KEGG: ecm:EcSMS35_3809 hemin importer ATP-binding subunit; PFAM: ABC transporter-like; PRIAM: Vitamin B12-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Hemin importer ATP-binding subunit; PFAM: ABC transporter
YP_004345528.1	COGs: COG3720  heme degradation protein; InterPro IPR007845; KEGG: zpr:ZPR_0398 hemin degrading factor; PFAM: Haemin-degrading; SPTR: Hemin degrading factor; PFAM: Haemin-degrading HenS.ChuX domain
YP_004345529.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_7219 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004345530.1	KEGG: cpi:Cpin_7218 hypothetical protein; SPTR:  uncharacterized protein
YP_004345531.1	COGs: COG0124 Histidyl-tRNA synthetase; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; InterPro IPR002314:IPR004154:IPR015807; KEGG: zpr:ZPR_2125 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_004345532.1	COGs: COG2986 Histidine ammonia-lyase; InterPro IPR001106:IPR005921; KEGG: fps:FP0838 histidine ammonia-lyase; PFAM: Phenylalanine/histidine ammonia-lyase; PRIAM: Histidine ammonia-lyase; SPTR: Histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase
YP_004345533.1	KEGG: pap:PSPA7_5758 potassium/proton antiporter; SPTR:  uncharacterized protein
YP_004345535.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR001440:IPR011712:IPR003594:IPR019734; KEGG: phe:Phep_2111 ATP-binding region ATPase domain protein; PFAM: Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; ATPase-like, ATP-binding domain; SPTR: ATP-binding region ATPase domain protein; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Tetratricopeptide repeat
YP_004345536.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fba:FIC_01136 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004345537.1	KEGG: fba:FIC_02518 glycosyl transferase; SPTR: Glycosyl transferase
YP_004345538.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439:IPR003593; KEGG: fba:FIC_02059 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_004345539.1	KEGG: cpi:Cpin_6111 transcriptional regulator, ArsR family; SPTR: Transcriptional regulator, ArsR family protein; PFAM: Bacterial regulatory protein, arsR family
YP_004345540.1	InterPro IPR006342; KEGG: cyn:Cyan7425_2162 methyltransferase FkbM family; SPTR: Methyltransferase FkbM family; TIGRFAM: Methyltransferase FkbM; PFAM: Met-10+ like-protein; TIGRFAM: methyltransferase, FkbM family
YP_004345541.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR010827; KEGG: cpi:Cpin_2996 patatin; PFAM: Patatin; Surface antigen variable number; SPTR:  uncharacterized protein; PFAM: Patatin-like phospholipase
YP_004345542.1	COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR003594:IPR020576; KEGG: cat:CA2559_07530 chaperone protein HtpG; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SPTR: Chaperone HtpG; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_004345543.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: cat:CA2559_03720 DnaJ domain containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: DnaJ-like protein DjlA; PFAM: DnaJ domain; Tellurite resistance protein TerB
YP_004345544.1	InterPro IPR000601; KEGG: phe:Phep_2593 conserved repeat domain protein; PFAM: PKD; SPTR: Conserved repeat domain protein; PFAM: PKD domain
YP_004345545.1	COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: bth:BT_4190  S-adenosylmethionine-dependent methytransferase; PFAM: Tetrapyrrole methylase; SPTR: Tetrapyrrole methylase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004345546.1	COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: cat:CA2559_12743 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase
YP_004345548.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: rbi:RB2501_02735  sigma factor A; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR:  sigma factor A; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345549.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR006935:IPR001650:IPR014001:IPR005259; KEGG: phe:Phep_1550 primosomal protein N'; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Primosomal protein N'; TIGRFAM: Primosomal protein n; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: primosomal protein N'
YP_004345550.1	KEGG: ddi:DDB_G0274305 hypothetical protein; SPTR:  uncharacterized protein
YP_004345551.1	InterPro IPR004360; KEGG: dfe:Dfer_3641 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR:  uncharacterized protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004345552.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: phe:Phep_1271 patatin; PFAM: Patatin; SPTR:  uncharacterized protein; PFAM: Patatin-like phospholipase
YP_004345553.1	COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR004114:IPR000241; KEGG: coc:Coch_1420  RNA methylase; PFAM:  RNA methylase; THUMP; PRIAM: rRNA (guanine-N(2)-)-methyltransferase; SPTR:  RNA methylase; PFAM:  RNA methylase UPF0020; THUMP domain
YP_004345554.1	KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related; SPTR: CHU large protein, possible SAP or adhesin AidA-related
YP_004345555.1	KEGG: cat:CA2559_13428 hypothetical protein; SPTR:  uncharacterized protein
YP_004345557.1	COGs: COG0372 Citrate synthase; InterPro IPR002020:IPR010953; KEGG: phe:Phep_2053 citrate synthase I; PFAM: Citrate synthase-like; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type)
YP_004345558.1	COGs: COG1506 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase; InterPro IPR002469; KEGG: fps:FP2339 Xaa-Pro dipeptidyl-peptidase; PFAM: Peptidase S9B, dipeptidylpeptidase IV N-terminal; PRIAM: Dipeptidyl-peptidase IV; SPTR: Xaa-Pro dipeptidyl-peptidase; PFAM: Prolyl oligopeptidase; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_004345559.1	KEGG: eat:EAT1b_1831 endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase
YP_004345560.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: zpr:ZPR_0195  TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR:  TonB-dependent outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain
YP_004345561.1	COGs: COG2356 Endonuclease I; InterPro IPR007346; KEGG: fps:FP0696 extracellular ribonuclease precursor; PFAM: Endonuclease I; SPTR:  uncharacterized protein; PFAM: Endonuclease I
YP_004345562.1	COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR008334; KEGG: sli:Slin_4341 5'-nucleotidase domain protein; PFAM: 5'-Nucleotidase, C-terminal; SPTR: 5'-Nucleotidase domain protein; PFAM: 5'-nucleotidase, C-terminal domain
YP_004345563.1	COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR006311; KEGG: fjo:Fjoh_3473 metallophosphoesterase; PFAM: Metallophosphoesterase; PRIAM: 5'-nucleotidase; SPTR: Possible secreted 5'-nucleotidase; PFAM: Calcineurin-like phosphoesterase
YP_004345564.1	KEGG: chu:CHU_3366 hypothetical protein; SPTR:  uncharacterized protein
YP_004345565.1	KEGG: chu:CHU_3365 hypothetical protein; SPTR:  uncharacterized protein
YP_004345566.1	COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: chu:CHU_3364 hypothetical protein; PFAM: Protein of unknown function DUF1501; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1501)
YP_004345567.1	COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: chu:CHU_3363 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1800)
YP_004345568.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027:IPR004099:IPR006258; KEGG: phe:Phep_3001 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Dihydrolipoyl dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_004345569.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963; KEGG: sli:Slin_3920 peptidase M61 domain protein; PFAM: Peptidase M61; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase
YP_004345570.1	InterPro IPR012910; KEGG: srm:SRM_02396  outer membrane protein probably involved in nutrient binding; PFAM: TonB-dependent receptor, plug; SPTR:  TonB dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004345571.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR004518:IPR011551; KEGG: fjo:Fjoh_2534 nucleoside triphosphate pyrophosphohydrolase; PFAM: NTP pyrophosphohydrolase MazG,  catalytic core; SPTR: MazG family protein; TIGRFAM: NTP pyrophosphohydrolase MazG, bacterial; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_004345572.1	KEGG: fbc:FB2170_17121 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Lipid A 3-O-deacylase (PagL)
YP_004345573.1	KEGG: fbc:FB2170_17116 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2807)
YP_004345574.1	KEGG: fjo:Fjoh_1216 hypothetical protein; SPTR:  uncharacterized protein
YP_004345575.1	COGs: COG0283 Cytidylate kinase; HAMAP: Cytidylate kinase; InterPro IPR000623:IPR011994:IPR003136; KEGG: zpr:ZPR_1886 cytidylate kinase; PFAM: Cytidylate kinase domain; Shikimate kinase; PRIAM: Cytidylate kinase; SPTR: Cytidylate kinase; TIGRFAM: Cytidylate kinase; PFAM: Cytidylate kinase; Shikimate kinase; TIGRFAM: cytidylate kinase
YP_004345576.1	KEGG: phe:Phep_3878 hypothetical protein; SPTR:  uncharacterized protein
YP_004345577.1	KEGG: fps:FP1713 hypothetical protein; SPTR:  uncharacterized protein
YP_004345578.1	COGs: COG0622 phosphoesterase; InterPro IPR004843:IPR000979; KEGG: aas:Aasi_1357 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Calcineurin-like phosphoesterase; TIGRFAM: Phosphodiesterase MJ0936; TIGRFAM: phosphoesterase, MJ0936 family
YP_004345579.1	COGs: COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type alpha subunit; InterPro IPR001017:IPR017597; KEGG: chu:CHU_3718 pyruvate dehydrogenase E1 component alpha subunit; PFAM: Dehydrogenase, E1 component; PRIAM: Pyruvate dehydrogenase (acetyl-transferring); SPTR: Pyruvate dehydrogenase e1 component, alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit
YP_004345580.1	COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) protein; InterPro IPR000089:IPR004167:IPR001078:IPR006257; KEGG: phe:Phep_0172 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; PRIAM: Dihydrolipoyllysine-residue acetyltransferase; SPTR: Dihydrolipoyllysine-residue acetyltransferase (Dihydrolipoamide S-acetyltransferase); TIGRFAM: Dihydrolipoamide acetyltransferase, long form; PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_004345581.1	COGs: COG1278 Cold shock protein; InterPro IPR011129:IPR002059; KEGG: chu:CHU_2346 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; SPTR: 'cold-shock' DNA-binding protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004345582.1	KEGG: ctp:CTRG_00472 similar to ubiquitin C-terminal hydrolase; SPTR:  uncharacterized protein
YP_004345583.1	InterPro IPR003591:IPR001611; KEGG: lil:LA_2448 hypothetical protein; PFAM: Leucine-rich repeat; SPTR:  lipoprotein
YP_004345585.1	KEGG: pto:PTO0786 oligosaccharyl transferase STT3 subunit; SPTR: Oligosaccharyl transferase STT3 subunit
YP_004345586.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: cat:CA2559_05255 phenylacetic acid degradation protein; PFAM: Bacterial transferase hexapeptide repeat; SPTR: Phenylacetic acid degradation protein; transferase; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_004345587.1	COGs: COG2818 3-methyladenine DNA glycosylase; InterPro IPR005019; KEGG: dfe:Dfer_3910 methyladenine glycosylase; PFAM: Methyladenine glycosylase; SPTR:  uncharacterized protein; PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I
YP_004345588.1	KEGG: pgn:PGN_0023 hypothetical protein; SPTR:  uncharacterized protein
YP_004345589.1	COGs: COG0515 Serine/threonine protein kinase; InterPro IPR002290:IPR017442; KEGG: mmo:MMOB5590 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; SPTR: Serine/threonine protein kinase; PFAM: Protein kinase domain
YP_004345590.1	COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: chu:CHU_0312 iron(III) dicitrate transport protein, outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Iron(III) dicitrate transport protein, outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004345591.1	InterPro IPR011020; KEGG: phe:Phep_1329 vitamin K-dependent gamma-carboxylase; SMART: HTTM; SPTR: Vitamin K-dependent gamma-carboxylase; PFAM: Vitamin K-dependent gamma-carboxylase
YP_004345592.1	COGs: COG3489 periplasmic lipoprotein; InterPro IPR018976; KEGG: phe:Phep_1330 periplasmic lipoprotein; PFAM: Peptidase M75, Imelysin; SPTR:  uncharacterized protein; PFAM: Imelysin
YP_004345593.1	KEGG: fps:FP1486 hypothetical protein; SPTR:  uncharacterized protein
YP_004345594.1	COGs: COG2971 N-acetylglucosamine kinase; InterPro IPR002731; KEGG: dfe:Dfer_3564 hypothetical protein; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; SPTR:  uncharacterized protein; PFAM: BadF/BadG/BcrA/BcrD ATPase
YP_004345595.1	InterPro IPR018530; KEGG: lbl:LBL_2181 hypothetical protein; PFAM: Domain of unknown function DUF1987; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF1987)
YP_004345596.1	KEGG: sli:Slin_1990 hypothetical protein; SPTR:  uncharacterized protein
YP_004345597.1	InterPro IPR005632; KEGG: phe:Phep_0861 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR:  uncharacterized protein; PFAM: Outer membrane protein (OmpH-like)
YP_004345598.1	KEGG: pdi:BDI_2512 hypothetical protein; SPTR:  uncharacterized protein
YP_004345599.1	COGs: COG3757 Lyzozyme M1 (1 4-beta-N-acetylmuramidase); InterPro IPR018077:IPR002053; KEGG: dfe:Dfer_2632 glycoside hydrolase 25; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup; SPTR: Glycoside hydrolase 25; PFAM: Glycosyl hydrolases family 25
YP_004345600.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: chu:CHU_2682 hypothetical protein; SPTR:  uncharacterized protein
YP_004345601.1	KEGG: ank:AnaeK_0625 PE-PGRS family protein; SPTR: PE-PGRS family protein
YP_004345602.1	InterPro IPR018677; KEGG: bth:BT_1823 hypothetical protein; PFAM: Protein of unknown function DUF2157, membrane; SPTR:  uncharacterized protein; PFAM: Predicted membrane protein (DUF2157)
YP_004345603.1	KEGG: ypb:YPTS_1107 hypothetical protein; SPTR: Permease
YP_004345604.1	COGs: COG4929 Uncharacterized membrane-anchored protein; KEGG: bth:BT_1825 hypothetical protein; SPTR:  uncharacterized protein
YP_004345605.1	KEGG: mar:MAE_63020 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Transposase IS200 like
YP_004345606.1	KEGG: chu:CHU_0790 hypothetical protein; SPTR:  uncharacterized protein
YP_004345607.1	COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR004473; KEGG: dap:Dacet_2662 type I site-specific deoxyribonuclease, HsdR family; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_004345608.1	InterPro IPR001387; KEGG: bfs:BF3477  DNA-binding protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; PFAM: Helix-turn-helix
YP_004345609.1	COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: bfs:BF3478 hypothetical protein; PFAM: Protein of unknown function DUF955; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF955)
YP_004345610.1	KEGG: bfs:BF3479 hypothetical protein; SPTR:  uncharacterized protein
YP_004345611.1	COGs: COG4268 McrBC 5-methylcytosine restriction system component; InterPro IPR019292; KEGG: coc:Coch_1910 McrBC 5-methylcytosine restriction system component-like protein; PFAM: 5-methylcytosine restriction system component-like protein; SPTR:  uncharacterized protein; PFAM: McrBC 5-methylcytosine restriction system component
YP_004345612.1	InterPro IPR011704; KEGG: coc:Coch_1909 ATPase associated with various cellular activities AAA_5; PFAM: ATPase, AAA-5; SPTR: ATPase associated with various cellular activities AAA_5; PFAM: AAA domain (dynein-related subfamily)
YP_004345613.1	KEGG: sab:SAB1691 hypothetical protein; SPTR:  uncharacterized protein
YP_004345614.1	InterPro IPR000477; KEGG: fjo:Fjoh_2333 hypothetical protein; PFAM: RNA-directed DNA polymerase (reverse transcriptase); SPTR:  uncharacterized protein; PFAM: Reverse transcriptase (RNA-dependent DNA polymerase)
YP_004345615.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: vcj:VCD_003045 hypothetical protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Predicted protein; PFAM: Type I restriction modification DNA specificity domain
YP_004345616.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: zpr:ZPR_3435 type I restriction-modification system methyltransferase subunit like protein; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system methyltransferase subunit like protein; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_004345617.1	KEGG: chu:CHU_1453 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function DUF88
YP_004345618.1	KEGG: gfo:GFO_2291 PKD domain-containing protein; SPTR:  uncharacterized protein
YP_004345619.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR006176:IPR006108; KEGG: phe:Phep_1894 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; PRIAM: 3-hydroxybutyryl-CoA dehydrogenase; SPTR: 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004345620.1	InterPro IPR003749:IPR010035; KEGG: fps:FP0427 thiamine biosynthesis protein ThiS; PFAM: ThiamineS; SPTR: Thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS
YP_004345621.1	COGs: COG0422 Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: fps:FP0428 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; SPTR: Phosphomethylpyrimidine synthase; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_004345622.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: fjo:Fjoh_1602 thiamine monophosphate synthase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI
YP_004345623.1	COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR013749; KEGG: fjo:Fjoh_1601 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; PRIAM: Phosphomethylpyrimidine kinase; SPTR: Phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_004345624.1	COGs: COG0352 Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; InterPro IPR003733; KEGG: fps:FP0431 thiamine-phosphate diphosphorylase; PFAM: Thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_004345625.1	COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; HAMAP: Thiazole biosynthesis; InterPro IPR008867; KEGG: fps:FP0432 thiazole biosynthesis protein ThiG; PFAM: Thiazole biosynthesis; SPTR: Thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG
YP_004345626.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197:IPR010722:IPR012726; KEGG: fjo:Fjoh_1598 thiazole biosynthesis protein ThiH; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SPTR: Thiazole biosynthesis protein ThiH; TIGRFAM: Thiazole biosynthesis ThiH; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH
YP_004345627.1	COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR000594:IPR007901; KEGG: fps:FP0434 molybdopterin and thiamine biosynthesis protein; PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; SPTR: Molybdopterin and thiamine biosynthesis protein; PFAM: MoeZ/MoeB domain; ThiF family
YP_004345628.1	COGs: COG2852 conserved hypothetical protein; KEGG: npu:Npun_F2483 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF559)
YP_004345629.1	COGs: COG4807 conserved hypothetical protein; InterPro IPR009921; KEGG: chu:CHU_3098 hypothetical protein; PFAM: Protein of unknown function DUF1456; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1456)
YP_004345630.1	KEGG: gla:GL50803_114829 hypothetical protein; SPTR: Methyl-accepting chemotaxis sensory transducer
YP_004345631.1	KEGG: tme:Tmel_0446 O-antigen polymerase; SPTR:  uncharacterized protein
YP_004345632.1	KEGG: sfu:Sfum_0247 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Predicted periplasmic protein (DUF2233)
YP_004345633.1	KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004345634.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: sli:Slin_5141 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345635.1	KEGG: mmu:76459 carbonic anyhydrase 12; SPTR: cDNA, FLJ96882, highly similar to Homo sapiens carbonic anhydrase XII (CA12), mRNA
YP_004345636.1	KEGG: sli:Slin_5143 hypothetical protein; SPTR:  uncharacterized protein
YP_004345637.1	KEGG: cpi:Cpin_1997 hypothetical protein; SPTR:  uncharacterized protein
YP_004345638.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: cpi:Cpin_1998 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome C peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase
YP_004345639.1	KEGG: cyn:Cyan7425_4251 hypothetical protein; SPTR:  uncharacterized protein
YP_004345640.1	KEGG: tet:TTHERM_00077350 hypothetical protein; SPTR:  uncharacterized protein
YP_004345641.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: fjo:Fjoh_2815 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Uridine kinase:ABC transporter, transmembrane region:ATP/GTP-binding site motif A (P-loop):ABC; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004345642.1	HAMAP: 50S ribosomal protein L34; InterPro IPR000271; KEGG: phe:Phep_1543 ribosomal protein L34; PFAM: Ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: Ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_004345643.1	KEGG: cat:CA2559_05580  membrane-anchored cell surface protein; SPTR:  membrane-anchored cell surface protein; TIGRFAM: conserved repeat domain
YP_004345644.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR003594:IPR001440; KEGG: fba:FIC_01135 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Tetratricopeptide TPR-1; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345645.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: fba:FIC_01136 two-component response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004345646.1	KEGG: mar:MAE_61060 hyalin repeat-containing protein; SPTR:  uncharacterized protein
YP_004345647.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: dfe:Dfer_1794 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004345648.1	COGs: COG2008 Threonine aldolase; InterPro IPR001597; KEGG: dfe:Dfer_4745 threonine aldolase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Threonine aldolase; SPTR: Threonine aldolase; PFAM: Beta-eliminating lyase
YP_004345649.1	KEGG: ctp:CTRG_01618 hypothetical protein; SPTR: Predicted protein
YP_004345650.1	KEGG: chu:CHU_2931 hypothetical protein; SPTR:  uncharacterized protein
YP_004345651.1	InterPro IPR012910; KEGG: sli:Slin_3591 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor plug; PFAM: TonB-dependent Receptor Plug Domain
YP_004345652.1	KEGG: sli:Slin_3592 hypothetical protein; SPTR:  uncharacterized protein
YP_004345653.1	COGs: COG2954 conserved hypothetical protein; InterPro IPR008172; KEGG: pin:Ping_1903 adenylate cyclase; PFAM: Adenylate cyclase; SPTR: Adenylate cyclase; PFAM: CYTH domain
YP_004345654.1	KEGG: chu:CHU_2783 hypothetical protein; SPTR:  uncharacterized protein
YP_004345655.1	KEGG: rca:Rcas_0767 hypothetical protein; SPTR:  uncharacterized protein
YP_004345656.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198; KEGG: aba:Acid345_0265 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: Short-chain dehydrogenase/reductase SDR; PRIAM: 3-oxoacyl-[acyl-carrier-protein] reductase; SPTR: 3-oxoacyl-(Acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase
YP_004345657.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: fbc:FB2170_10036  capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein CapD-like; SPTR:  capsular polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004345658.1	COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: phe:Phep_2327 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004345659.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: shw:Sputw3181_3567 MORN repeat-containing protein; PFAM: MORN variant; SPTR: MORN variant repeat protein; PFAM: MORN repeat variant
YP_004345660.1	COGs: COG2908 conserved hypothetical protein; InterPro IPR004843; KEGG: coc:Coch_0614 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: UDP-2, 3-diacylglucosamine hydrolase; PFAM: Calcineurin-like phosphoesterase
YP_004345661.1	COGs: COG1225 Peroxiredoxin; InterPro IPR000866; KEGG: chu:CHU_3043 thioredoxin family protein; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Thiol:disulfide interchange protein; PFAM: AhpC/TSA family
YP_004345662.1	InterPro IPR000866; KEGG: sli:Slin_5957 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family
YP_004345663.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; InterPro IPR006075:IPR018027:IPR004413; KEGG: chu:CHU_1447 aspartyl/glutamyl-tRNA amidotransferase subunit B; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_004345664.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845:IPR011268:IPR011270; KEGG: bfs:BF3274 purine nucleoside phosphorylase; PFAM: Nucleoside phosphorylase; PRIAM: Purine-nucleoside phosphorylase; SPTR: Purine nucleoside phosphorylase I, inosine and guanosine-specific; TIGRFAM: Purine nucleoside phosphorylase I, inosine/guanosine-specific; Inosine guanosine/xanthosine phosphorylase; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase
YP_004345665.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; InterPro IPR003758; KEGG: cpi:Cpin_3670 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: Tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_004345666.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: fbc:FB2170_12611 glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyl transferase, group 2 family protein; PFAM: Glycosyl transferase 2
YP_004345667.1	KEGG: efe:EFER_1807 inner membrane protein YeaI; SPTR: General secretion pathway protein F
YP_004345668.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678; KEGG: phe:Phep_0025 protein of unknown function DUF34; PFAM: NGG1p interacting factor 3, NIF3; SPTR:  uncharacterized protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_004345669.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: phe:Phep_0026 protein of unknown function DUF164; PFAM: Protein of unknown function DUF164; SPTR:  uncharacterized protein; PFAM:  zinc ribbon domain
YP_004345670.1	COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: fjo:Fjoh_2951 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein; ResB-like family; TIGRFAM: cytochrome c-type biogenesis protein CcsB
YP_004345671.1	COGs: COG0386 Glutathione peroxidase; InterPro IPR000889; KEGG: tcu:Tcur_1812 peroxiredoxin; PFAM: Glutathione peroxidase; PRIAM: Peroxiredoxin; SPTR: Glutathione peroxidase; PFAM: Glutathione peroxidase
YP_004345672.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: fjo:Fjoh_4717 LmbE family protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR: GlcNAc-PI de-N-acetylase; PFAM: GlcNAc-PI de-N-acetylase
YP_004345673.1	COGs: COG0431 flavoprotein; InterPro IPR005025; KEGG: fbc:FB2170_13086 FMN reductase, NADPH-dependent; PFAM: NADPH-dependent FMN reductase; SPTR:  uncharacterized protein; PFAM: NADPH-dependent FMN reductase
YP_004345674.1	KEGG: phe:Phep_0831 hypothetical protein; SPTR:  uncharacterized protein
YP_004345675.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_0176 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor
YP_004345676.1	KEGG: chu:CHU_3322 hypothetical protein; SPTR:  uncharacterized protein
YP_004345677.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: abu:Abu_0687 glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_004345678.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: rbi:RB2501_01830 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; PFAM: Bacterial Ig-like domain (group 3); Beta-lactamase
YP_004345679.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: phe:Phep_1413 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V
YP_004345680.1	KEGG: dfe:Dfer_0070 hypothetical protein; SPTR:  uncharacterized protein
YP_004345681.1	InterPro IPR002035; KEGG: paa:Paes_1233 hypothetical protein; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_004345682.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR013766; KEGG: chu:CHU_3559 thioredoxin; PFAM: Thioredoxin domain; Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin; PFAM: Thioredoxin; Rhodanese-like domain
YP_004345683.1	KEGG: sli:Slin_6447 hypothetical protein; SPTR:  uncharacterized protein
YP_004345684.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain
YP_004345685.1	InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; SMART: Rhodanese-like; SPTR: Beta-lactamase-like protein; PFAM: Rhodanese-like domain
YP_004345686.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: gfo:GFO_0972 metallo-beta-lactamase/rhodanese-like domain-containing protein; SPTR: Metallo-beta-lactamase/rhodanese-like domain protein; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004345687.1	InterPro IPR002781; KEGG: sli:Slin_6948 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR:  uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004345688.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fba:FIC_01586 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding; SPTR: Transcriptional regulator Crp family protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004345689.1	InterPro IPR005128; KEGG: scl:sce9323 hypothetical protein; PFAM: Alpha-acetolactate decarboxylase; SPTR: Alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase
YP_004345690.1	KEGG: sli:Slin_5491 hypothetical protein; SPTR:  uncharacterized protein
YP_004345691.1	KEGG: ath:AT1G28400 hypothetical protein; SPTR: F3M18.16
YP_004345692.1	InterPro IPR013538; KEGG: phe:Phep_2390 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004345693.1	KEGG: fjo:Fjoh_0498 beta-lactamase; SPTR: Beta-lactamase; peptidase S12
YP_004345694.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); HAMAP: DNA replication and repair protein recF; InterPro IPR003395:IPR001238; KEGG: fbc:FB2170_09561 DNA replication and repair protein RecF, ABC family ATPase; PFAM: RecF/RecN/SMC protein, N-terminal; SPTR: DNA replication and repair protein recF; TIGRFAM: DNA-binding, RecF; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_004345695.1	InterPro IPR007922; KEGG: phe:Phep_0535 protein of unknown function DUF721; PFAM: Protein of unknown function DUF721; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF721)
YP_004345696.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: fps:FP0885 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: Ketopantoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004345697.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145; KEGG: pru:PRU_0298 RNA pseudouridine synthase; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004345698.1	InterPro IPR011110; KEGG: bpb:bpr_III253 two component system histidine kinase/response regulator hybrid protein; PFAM: Two component regulator propeller; SPTR: Possible sensor protein; PFAM: Two component regulator propeller
YP_004345699.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR019734:IPR001440:IPR011712:IPR003594; KEGG: fba:FIC_01135 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345700.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_4160 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004345701.1	InterPro IPR019861; KEGG: dfe:Dfer_3688 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345702.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: phe:Phep_2593 conserved repeat domain protein; PFAM: PKD; SMART: PKD; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related; PFAM: PKD domain
YP_004345703.1	KEGG: fba:FIC_00897 hypothetical protein; SPTR:  uncharacterized protein
YP_004345704.1	KEGG: mrd:Mrad2831_4339 porin; SPTR:  uncharacterized protein
YP_004345705.1	KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport; SPTR:  uncharacterized protein
YP_004345706.1	KEGG: ccb:Clocel_0858 hypothetical protein; SPTR:  uncharacterized protein
YP_004345707.1	COGs: COG4783  Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: btr:Btr_2438  peptidase; PFAM: Peptidase M48; SPTR:  peptidase; PFAM: Peptidase M48
YP_004345708.1	COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: fps:FP1732 amino acid-transporting permease; PFAM: Amino acid permease domain; SPTR: Probable amino acid-transporting permease; PFAM: Amino acid permease; TC 2.A.3
YP_004345709.1	KEGG: sus:Acid_1982 hypothetical protein; SPTR:  uncharacterized protein
YP_004345710.1	COGs: COG0541 Signal recognition particle GTPase; InterProIPR003593:IPR013822:IPR000897:IPR004125:IPR 004780; KEGG: fjo:Fjoh_0244 signal recognition particle protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; SMART: ATPase, AAA+ type, core; SPTR: Signal recognition particle subunit FFH/SRP54 (Srp54); TIGRFAM: Signal recognition particle, SRP; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_004345711.1	KEGG: fba:FIC_00870 hypothetical protein; SPTR:  uncharacterized protein
YP_004345712.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR013766; KEGG: cpi:Cpin_6898 rhodanese domain protein; PFAM: Thioredoxin domain; Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Thioredoxin; Rhodanese-like domain
YP_004345713.1	KEGG: chu:CHU_3440 glycoside hydrolase 8 protein; SPTR: CHU large protein; glycoside hydrolase 8 protein, beta-glycosidase related
YP_004345714.1	InterPro IPR007730:IPR019861; KEGG: gfo:GFO_1837 hypothetical protein; PFAM: Sporulation related domain; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345715.1	InterPro IPR000601; KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; PFAM: PKD; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related; PFAM: PKD domain
YP_004345716.1	InterPro IPR000601:IPR003644; KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; PFAM: PKD; Na-Ca exchanger/integrin-beta4; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related; PFAM: PKD domain
YP_004345717.1	InterPro IPR007837; KEGG: cpi:Cpin_7171 DinB family protein; PFAM: DinB; SPTR: DinB family protein; PFAM: DinB family
YP_004345718.1	COGs: COG2378 transcriptional regulator protein; KEGG: chu:CHU_0680 DeoR family transcriptional regulator; SPTR: Transcriptional regulator, DeoR family; PFAM: HTH domain
YP_004345719.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR006094:IPR004113; KEGG: fps:FP0574 (S)-2-hydroxy-acid oxidase; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; PRIAM: D-lactate dehydrogenase (cytochrome); SPTR: FAD/FMN-containing dehydrogenase; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_004345720.1	KEGG: tva:TVAG_171040 hypothetical protein; SPTR: Leucine Rich Repeat family protein
YP_004345721.1	KEGG: tet:TTHERM_00694520 hypothetical protein
YP_004345722.1	KEGG: ehi:EHI_077870 trichohyalin; SPTR:  uncharacterized protein
YP_004345723.1	COGs: COG4487 conserved hypothetical protein; InterPro IPR019219; KEGG: fjo:Fjoh_4622 hypothetical protein; PFAM: Protein of unknown function DUF2130; SPTR: Uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2130)
YP_004345724.1	KEGG: amr:AM1_3494 hypothetical protein; SPTR:  uncharacterized protein
YP_004345725.1	InterPro IPR004360; KEGG: fjo:Fjoh_0066 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_004345726.1	KEGG: seh:SeHA_C0458 ferrichrome-iron receptor; SPTR:  uncharacterized protein
YP_004345727.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: chu:CHU_1561 OmpA family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: Outer membrane protein, OmpA family; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004345728.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734:IPR006597:IPR001440; KEGG: pmf:P9303_28481 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; Sel1-like; SPTR:  uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004345729.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616:IPR020617:IPR002155; KEGG: gau:GAU_1060  beta-ketoadipyl-CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: 3-oxoadipyl-CoA thiolase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase
YP_004345730.1	KEGG: chu:CHU_3265 hypothetical protein; SPTR:  uncharacterized protein
YP_004345731.1	KEGG: chu:CHU_3264 hypothetical protein; SPTR:  uncharacterized protein
YP_004345732.1	KEGG: dtu:Dtur_1285 hypothetical protein; SPTR:  uncharacterized protein
YP_004345733.1	KEGG: rcu:RCOM_0852170 aberrant large forked product, SPTR: Aberrant large forked product
YP_004345734.1	KEGG: chu:CHU_1386 hypothetical protein; SPTR:  uncharacterized protein
YP_004345735.1	KEGG: dfe:Dfer_5355 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Domain of Unknown Function (DUF748)
YP_004345736.1	KEGG: ngr:NAEGRDRAFT_68684 hypothetical protein; SPTR: Predicted protein
YP_004345737.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR010023:IPR006549; KEGG: fjo:Fjoh_2953 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; SPTR: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_004345738.1	InterPro IPR000534:IPR018931; KEGG: gfo:GFO_1810 hypothetical protein; PFAM: Domain of unknown function DUF2520; Semialdehyde dehydrogenase, NAD-binding; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF2520); NADP oxidoreductase coenzyme F420-dependent
YP_004345739.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); HAMAP: SecA protein; InterProIPR011115:IPR011130:IPR001650:IPR011116:IPR 004027:IPR000185; KEGG: cpi:Cpin_7284 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein, cross-linking domain; DNA/RNA helicase, C-terminal; SecA Wing/Scaffold; SEC-C motif; SPTR: Protein translocase subunit secA; TIGRFAM: SecA protein; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_004345740.1	KEGG: hma:rrnAC1708 glutamyl-tRNA reductase; SPTR: Homoserine O-succinyltransferase
YP_004345741.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; HAMAP: GMP synthase [glutamine-hydrolyzing]; InterPro IPR000991:IPR001674:IPR004739; KEGG: phe:Phep_0993 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: GMP synthase (glutamine-hydrolyzing); SPTR: Bifunctional GMP synthase/glutamine amidotransferase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_004345742.1	InterPro IPR002482:IPR018392; KEGG: bvu:BVU_3045 LysM repeat-containing protein; PFAM: Peptidoglycan-binding lysin domain; SPTR:  uncharacterized protein; PFAM: LysM domain
YP_004345743.1	COGs: COG0408 Coproporphyrinogen III oxidase; InterPro IPR001260; KEGG: chu:CHU_1918 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase; PRIAM: Coproporphyrinogen oxidase; SPTR: Coproporphyrinogen oxidase; PFAM: Coproporphyrinogen III oxidase
YP_004345744.1	COGs: COG0506 Proline dehydrogenase; InterPro IPR002872; KEGG: phe:Phep_1516 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase
YP_004345745.1	COGs: COG0337 3-dehydroquinate synthetase; HAMAP: 3-dehydroquinate synthase AroB, subgroup; InterPro IPR002658:IPR016037; KEGG: phe:Phep_1514 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_004345746.1	InterPro IPR000551; KEGG: fps:FP1943 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein
YP_004345747.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: tit:Thit_0817 NLP/P60 protein; PFAM: NLP/P60; SPTR: NLP/P60 family protein; PFAM: NlpC/P60 family
YP_004345748.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: phe:Phep_2207 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR: Major facilitator family transporter; PFAM: Major Facilitator Superfamily
YP_004345749.1	COGs: COG0225 Peptide methionine sulfoxide reductase; HAMAP: Peptide methionine sulphoxide reductase MsrA; InterPro IPR002569; KEGG: chu:CHU_1649 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; PRIAM: Peptide-methionine (S)-S-oxide reductase; SPTR: Peptide methionine sulfoxide reductase; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_004345750.1	KEGG: cpi:Cpin_1503 hypothetical protein; SPTR:  uncharacterized protein
YP_004345751.1	COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR003591:IPR001611; KEGG: ter:Tery_3798 small GTP-binding protein; PFAM: Leucine-rich repeat; SPTR: Small GTP-binding protein; PFAM: Leucine Rich Repeat
YP_004345752.1	InterPro IPR003675; KEGG: mpd:MCP_1279 hypothetical protein; PFAM: Abortive infection protein; SPTR: CAAX amino terminal protease; PFAM: CAAX amino terminal protease
YP_004345753.1	COGs: COG3542 conserved hypothetical protein; InterPro IPR009327; KEGG: cpy:Cphy_1672 hypothetical protein; PFAM: Protein of unknown function DUF985; SPTR:  uncharacterized protein; PFAM: Cupin superfamily (DUF985)
YP_004345754.1	KEGG: kcr:Kcr_0230 glyceraldehyde-3-phosphate dehydrogenase, type I; SPTR:  uncharacterized protein
YP_004345755.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: cat:CA2559_04940 nitroreductase; PFAM: Nitroreductase-like; SPTR: Protein YdjA; PFAM: Nitroreductase
YP_004345756.1	KEGG: pfh:PFHG_02268 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004345757.1	COGs: COG0669 Phosphopantetheine adenylyltransferase; HAMAP: Coenzyme A biosynthesis protein; InterPro IPR004820:IPR004821:IPR001980; KEGG: fjo:Fjoh_2616 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; manually curated; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_004345758.1	COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: fbc:FB2170_15193  methyltransferase; PFAM: Conserved hypothetical protein CHP00095; SPTR:  methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_004345759.1	KEGG: cat:CA2559_10603 hypothetical protein; SPTR:  uncharacterized protein
YP_004345760.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; InterPro IPR003593; KEGG: zpr:ZPR_2311 RecD-like exodeoxyribonuclease; SMART: ATPase, AAA+ type, core; SPTR: ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase super family I protein
YP_004345761.1	KEGG: pcb:PC000278.02.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004345762.1	InterPro IPR003599:IPR013517; KEGG: phe:Phep_2593 conserved repeat domain protein; PFAM: FG-GAP; SPTR: Conserved repeat domain protein
YP_004345763.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: aha:AHA_1635 cytosolic long-chain acyl-CoA thioester hydrolase; PFAM: Thioesterase superfamily; SPTR: Acyl-CoA hydrolase; PFAM: Thioesterase superfamily
YP_004345764.1	KEGG: ppa:PAS_chr1-1_0018 Subunit of the heterodimeric FACT complex (Spt16p-Pob3p); SPTR: Subunit of the heterodimeric FACT complex (Spt16p-Pob3p)
YP_004345765.1	InterPro IPR001789; KEGG: cpi:Cpin_3970 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004345766.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dfe:Dfer_5219 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase
YP_004345767.1	KEGG: fps:FP1574 hypothetical protein; SPTR:  uncharacterized protein
YP_004345768.1	KEGG: zpr:ZPR_2233  DNA-binding protein; SPTR:  DNA-binding protein
YP_004345769.1	KEGG: fps:FP2295 hypothetical protein; SPTR:  uncharacterized protein
YP_004345770.1	KEGG: gfo:GFO_1372 ATPase central region domain-containing protein; SPTR: Protein containing AAA ATPase central region domain
YP_004345771.1	COGs: COG4861 conserved hypothetical protein; KEGG: zpr:ZPR_4120 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2186)
YP_004345772.1	COGs: COG4849 conserved hypothetical protein; KEGG: zpr:ZPR_4121 hypothetical protein; SPTR:  uncharacterized protein
YP_004345773.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356; KEGG: nve:NEMVE_v1g225887 hypothetical protein; PFAM: DNA methylase, adenine-specific; SPTR: Predicted protein; PFAM: N-6 DNA Methylase
YP_004345774.1	InterPro IPR000055; KEGG: shi:Shel_20390 hypothetical protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR:  type I restriction-modification system, S subunit; PFAM: Type I restriction modification DNA specificity domain
YP_004345775.1	COGs: COG0515 Serine/threonine protein kinase; InterPro IPR020635:IPR002290:IPR011528:IPR017442; KEGG: gpb:HDN1F_29030 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; NERD; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR:  uncharacterized protein; PFAM: Protein kinase domain; Nuclease-related domain
YP_004345776.1	KEGG: nve:NEMVE_v1g225056 hypothetical protein; SPTR: Predicted protein
YP_004345777.1	KEGG: gpb:HDN1F_29010 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Zonular occludens toxin (Zot)
YP_004345778.1	COGs: COG0631 Serine/threonine protein phosphatase; InterPro IPR001932; KEGG: zpr:ZPR_4128 protein phosphatase 2C-related protein; SMART: Protein phosphatase 2C-related; SPTR: Protein phosphatase 2C-related protein; PFAM: Protein phosphatase 2C
YP_004345779.1	KEGG: vvi:100261722 hypothetical protein LOC100261722
YP_004345780.1	KEGG: fps:FP2318 hypothetical protein; SPTR:  uncharacterized protein
YP_004345781.1	KEGG: gfo:GFO_0259 hypothetical protein; SPTR:  uncharacterized protein
YP_004345782.1	KEGG: neu:NE1380 hypothetical protein; SPTR:  uncharacterized protein
YP_004345783.1	KEGG: cac:CA_C1579 methyl-accepting chemotaxis-like protein (chemotaxis sensory transducer); SPTR: Methyl-accepting chemotaxis-like protein (Chemotaxis sensory transducer)
YP_004345784.1	KEGG: fps:FP2320 hypothetical protein; SPTR:  uncharacterized protein
YP_004345785.1	SPTR: DNA-binding protein HU, beta subunit
YP_004345786.1	KEGG: cat:CA2559_11623 hypothetical protein; SPTR:  uncharacterized protein
YP_004345787.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004345788.1	KEGG: chu:CHU_1191 hypothetical protein; SPTR:  uncharacterized protein
YP_004345789.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: rbi:RB2501_10362 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase
YP_004345790.1	InterPro IPR014944; KEGG: zpr:ZPR_0725 HSP20-like protein; PFAM: Toxin-module SymE-like; SPTR: HSP20-like protein; PFAM: HSP20-like domain of unknown function (DUF1813)
YP_004345791.1	KEGG: fps:FP1574 hypothetical protein; SPTR:  uncharacterized protein
YP_004345792.1	KEGG: zpr:ZPR_2233  DNA-binding protein; SPTR:  DNA-binding protein
YP_004345793.1	KEGG: cpi:Cpin_2795 peptidase C14 caspase catalytic subunit P20; SPTR:  peptidoglycan binding domain protein; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_004345794.1	KEGG: fps:FP1571 hypothetical protein; SPTR:  uncharacterized protein
YP_004345795.1	KEGG: fps:FP2296 hypothetical protein; SPTR:  uncharacterized protein
YP_004345796.1	InterPro IPR001387; KEGG: gfo:GFO_0879 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix
YP_004345797.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR003356:IPR004546; KEGG: fjo:Fjoh_4393 type I restriction-modification system, M subunit; PFAM: DNA methylase, adenine-specific; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_004345798.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: hin:HI0216 type I restriction/modification specificity protein; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction modification system specificity protein; PFAM: Type I restriction modification DNA specificity domain
YP_004345799.1	KEGG: rpb:RPB_3054 anticodon nuclease PrrC; SPTR: Anticodon nuclease; manually curated
YP_004345800.1	COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR004473; KEGG: fjo:Fjoh_4396 HsdR family type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; SPTR: Type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type I restriction and modification enzyme - subunit R C terminal; Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_004345801.1	KEGG: fps:FP1531 hypothetical protein; SPTR:  uncharacterized protein
YP_004345802.1	KEGG: bfr:BF1778 hypothetical protein; SPTR:  uncharacterized protein
YP_004345803.1	InterPro IPR010359; KEGG: ana:all7686 hypothetical protein; PFAM: Protein of unknown function DUF955; SPTR: All7686 protein; PFAM: Domain of unknown function (DUF955)
YP_004345804.1	InterPro IPR001387; KEGG: ana:alr1976 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator; PFAM: Helix-turn-helix
YP_004345806.1	KEGG: fbc:FB2170_11816 hypothetical protein
YP_004345807.1	KEGG: dma:DMR_14620 hypothetical protein; SPTR:  uncharacterized protein
YP_004345808.1	InterPro IPR004027; KEGG: hch:HCH_06275 hypothetical protein; PFAM: SEC-C motif; SPTR:  uncharacterized protein; PFAM: SEC-C motif
YP_004345809.1	KEGG: mpt:Mpe_A2369 hypothetical protein; SPTR:  uncharacterized protein
YP_004345810.1	KEGG: raf:RAF_ORF0098 7-cyano-7-deazaguanine reductase; SPTR: MGC86391 protein
YP_004345811.1	KEGG: bfs:BF0473 hypothetical protein; SPTR:  uncharacterized protein
YP_004345812.1	KEGG: fps:FP2320 hypothetical protein; SPTR:  uncharacterized protein
YP_004345813.1	KEGG: chu:CHU_1187 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3040)
YP_004345814.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004345815.1	KEGG: cat:CA2559_11608 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345816.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: dfe:Dfer_4202 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase; PFAM: Phage integrase
YP_004345817.1	InterPro IPR018534; KEGG: fps:FP1540 hypothetical protein; PFAM: Tetracycline regulation of excision, RteC; SPTR:  uncharacterized protein; PFAM: RteC protein
YP_004345818.1	KEGG: cat:CA2559_11658 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345819.1	KEGG: fps:FP1571 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345820.1	KEGG: fps:FP1570 hypothetical protein; SPTR:  uncharacterized protein
YP_004345821.1	InterPro IPR019619; KEGG: fbc:FB2170_14098 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004345822.1	InterPro IPR007272; KEGG: fba:FIC_01580 hypothetical protein; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395)
YP_004345823.1	InterPro IPR007272; KEGG: fba:FIC_01581 probable transmembrane protein; PFAM: Protein of unknown function DUF395, YeeE/YedE; SPTR: Protein of hypothetical function DUF395, YeeE/YedE; PFAM: YeeE/YedE family (DUF395)
YP_004345824.1	InterPro IPR013217; KEGG: gfo:GFO_2405 thiopurine S-methyltransferase; PFAM: Methyltransferase type 12; SPTR: Thiopurine methyltransferase; PFAM: Thiopurine S-methyltransferase (TPMT)
YP_004345825.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001763; KEGG: msv:Mesil_2631 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain
YP_004345826.1	InterPro IPR002781; KEGG: fba:FIC_01585 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR:  uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004345827.1	KEGG: zpr:ZPR_1807  oxidoreductase; SPTR:  uncharacterized protein; PFAM: Lycopene cyclase
YP_004345828.1	KEGG: rbi:RB2501_09420 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004345829.1	KEGG: bvu:BVU_1308 hypothetical protein; SPTR:  uncharacterized protein
YP_004345830.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Beta-lactamase-like protein; PFAM: Rhodanese-like domain
YP_004345831.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004345832.1	KEGG: fps:FP1813 hypothetical protein; SPTR:  uncharacterized protein
YP_004345833.1	KEGG: cpi:Cpin_2391 hypothetical protein; SPTR:  uncharacterized protein
YP_004345834.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763:IPR013766; KEGG: chu:CHU_3559 thioredoxin; PFAM: Thioredoxin domain; Rhodanese-like; SMART: Rhodanese-like; SPTR: Thioredoxin; PFAM: Thioredoxin; Rhodanese-like domain; TIGRFAM: thioredoxin
YP_004345835.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001808:IPR000595; KEGG: rbi:RB2501_07235 transcriptional regulator, Crp family protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp family protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004345836.1	KEGG: xla:734417 G-2 and S-phase expressed 1; SPTR: MGC114722 protein
YP_004345837.1	InterPro IPR011637; KEGG: cat:CA2559_11793 hypothetical protein; PFAM: DoxX; SPTR:  uncharacterized protein; PFAM: DoxX
YP_004345838.1	KEGG: zpr:ZPR_1819 hypothetical protein; SPTR:  uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_004345839.1	COGs: COG0737 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterase; InterPro IPR004843:IPR008334; KEGG: gfo:GFO_1276 periplasmic 5'-nucleotidase; PFAM: 5'-Nucleotidase, C-terminal; Metallophosphoesterase; SPTR: Periplasmic 5'-nucleotidase; PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase
YP_004345840.1	KEGG: chu:CHU_2933 hypothetical protein; SPTR: RNA polymerase ECF-type sigma factor
YP_004345841.1	InterPro IPR001387; KEGG: pdi:BDI_2133 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR:  uncharacterized protein; PFAM: Helix-turn-helix
YP_004345842.1	KEGG: bth:BT_4753 hypothetical protein; SPTR: Lambda repressor-like, DNA-binding protein; PFAM: Helix-turn-helix
YP_004345843.1	InterPro IPR003594; KEGG: ses:SARI_03149 hypothetical protein; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR:  uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345844.1	KEGG: ses:SARI_03148 hypothetical protein; SPTR:  uncharacterized protein
YP_004345845.1	KEGG: hip:CGSHiEE_01335 HNH endonuclease; SPTR:  uncharacterized protein; TIGRFAM: conserved hypothetical protein TIGR02646
YP_004345846.1	InterPro IPR003356; KEGG: wsu:WS1930 hypothetical protein; PFAM: DNA methylase, adenine-specific; SPTR: N-6 DNA methylase; PFAM: N-6 DNA Methylase
YP_004345847.1	KEGG: sli:Slin_4858 hypothetical protein; SPTR:  uncharacterized protein
YP_004345848.1	KEGG: sli:Slin_4857 hypothetical protein; SPTR:  uncharacterized protein
YP_004345849.1	COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR003959; KEGG: sli:Slin_4856 AAA ATPase central domain protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: AAA family ATPase; PFAM: ATPase associated with various cellular activities (AAA)
YP_004345850.1	KEGG: sli:Slin_4855 hypothetical protein; SPTR:  uncharacterized protein
YP_004345851.1	KEGG: fps:FP2318 hypothetical protein; SPTR:  uncharacterized protein
YP_004345852.1	KEGG: fps:FP2320 hypothetical protein; SPTR:  uncharacterized protein
YP_004345853.1	KEGG: vpo:Kpol_1040p7 hypothetical protein; SPTR:  uncharacterized protein
YP_004345854.1	KEGG: apb:SAR116_0125 histone family protein DNA-binding protein; SPTR: Histone family protein DNA-binding protein
YP_004345855.1	KEGG: cat:CA2559_11623 hypothetical protein; SPTR:  uncharacterized protein
YP_004345856.1	KEGG: chu:CHU_1189 hypothetical protein; SPTR:  uncharacterized protein
YP_004345857.1	KEGG: pin:Ping_1010 hypothetical protein; SPTR:  uncharacterized protein
YP_004345858.1	KEGG: fps:FP1391 hypothetical protein; SPTR:  uncharacterized protein; manually curated; PFAM: Transposase
YP_004345859.1	InterPro IPR001387; KEGG: pmz:HMPREF0659_A6124 helix-turn-helix protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, ; PFAM: Helix-turn-helix
YP_004345860.1	InterPro IPR000330:IPR001650:IPR014001; KEGG: coc:Coch_1947 helicase domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_004345861.1	COGs: COG4804 conserved hypothetical protein; InterPro IPR009362; KEGG: mhu:Mhun_2787 hypothetical protein; PFAM: Protein of unknown function DUF1016; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1016)
YP_004345862.1	KEGG: kol:Kole_1971 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Eco57I restriction endonuclease
YP_004345863.1	KEGG: pph:Ppha_2913 hypothetical protein; SPTR:  uncharacterized protein
YP_004345865.1	KEGG: sli:Slin_4821 hypothetical protein; SPTR:  uncharacterized protein
YP_004345866.1	InterPro IPR001387; KEGG: dfe:Dfer_1519 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family protein; PFAM: Helix-turn-helix
YP_004345867.1	KEGG: cbb:CLD_1920 flagellar biosynthesis protein FlhG; SPTR:  uncharacterized protein
YP_004345868.1	KEGG: str:Sterm_0554 protein of unknown function DUF1311; SPTR:  uncharacterized protein
YP_004345869.1	KEGG: rlg:Rleg_5759 phospholipase D/transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase
YP_004345870.1	KEGG: pjd:Pjdr2_5044 two component transcriptional regulator, AraC family; SPTR:  uncharacterized protein N246L
YP_004345871.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003594; KEGG: fjo:Fjoh_1442 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345872.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fjo:Fjoh_1441 LytTR family two component transcriptional regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004345873.1	KEGG: tps:THAPSDRAFT_4408 hypothetical protein; SPTR: Oxidoreductase, short chain dehydrogenase/reductase
YP_004345874.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR019734; KEGG: cat:CA2559_01475 histidine kinase sensor protein; PFAM: ATPase-like, ATP-binding domain; SPTR: Membrane-associated sensory histidine kinase-like ATPase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004345875.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cat:CA2559_01470 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR:  nitratenitrite response regulator protein; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004345876.1	KEGG: cpi:Cpin_3805 glycoside hydrolase 18; SPTR: Glycoside hydrolase 18
YP_004345877.1	KEGG: rbi:RB2501_12904 hypothetical protein; SPTR:  uncharacterized protein
YP_004345878.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: lsp:Bsph_4477 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004345879.1	KEGG: hor:Hore_02370 hypothetical protein; SPTR:  uncharacterized protein
YP_004345880.1	KEGG: zpr:ZPR_2163 hypothetical protein; SPTR:  uncharacterized protein
YP_004345881.1	InterPro IPR001845; KEGG: chu:CHU_0540 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004345882.1	KEGG: fjo:Fjoh_2988 hypothetical protein; SPTR:  uncharacterized protein
YP_004345883.1	KEGG: chu:CHU_0542 protein-tyrosine-phosphatase; SPTR: Protein-tyrosine-phosphatase
YP_004345884.1	COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR002657:IPR004706; KEGG: fjo:Fjoh_4422 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: Arsenite efflux transporter; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein
YP_004345885.1	InterPro IPR002035; KEGG: kko:Kkor_0275 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR: Von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A domain
YP_004345886.1	KEGG: aba:Acid345_0365 protein of unknown function DUF542, ScdA-like; SPTR: Transcriptional regulator, LuxR family domain protein
YP_004345887.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; InterPro IPR013766; KEGG: bth:BT_3069  disulphide-isomerase; PFAM: Thioredoxin domain; SPTR:  disulphide-isomerase; PFAM: Thioredoxin
YP_004345888.1	KEGG: cpi:Cpin_1931 CsbD family protein; SPTR:  uncharacterized protein
YP_004345889.1	KEGG: drt:Dret_0334 hypothetical protein; SPTR:  uncharacterized protein
YP_004345890.1	KEGG: fph:Fphi_1569 RmuC family protein; SPTR:  uncharacterized protein
YP_004345891.1	KEGG: chu:CHU_3557 hypothetical protein; SPTR:  uncharacterized protein
YP_004345892.1	KEGG: aca:ACP_2870 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345893.1	KEGG: cpi:Cpin_1932 hypothetical protein; SPTR:  uncharacterized protein
YP_004345894.1	KEGG: fjo:Fjoh_1010 hypothetical protein; SPTR: Aspartyl-tRNA synthetase
YP_004345895.1	InterPro IPR000005:IPR018060; KEGG: sli:Slin_6599 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Regulator with DNA binding domain protein; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345896.1	InterPro IPR013096; KEGG: mst:Msp_0002 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR:  uncharacterized protein; PFAM: Cupin domain
YP_004345897.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_6599 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Regulator with DNA binding domain protein; manually curated; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345898.1	KEGG: ccb:Clocel_3454 peptidase M23; SPTR: 200 kDa antigen p200
YP_004345899.1	KEGG: cpi:Cpin_1932 hypothetical protein; SPTR:  uncharacterized protein
YP_004345900.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR000005:IPR018060; KEGG: sli:Slin_6599 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Regulator with DNA binding domain protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004345901.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: amr:AM1_1336 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; SPTR: Aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase
YP_004345902.1	KEGG: zpr:ZPR_0706 hypothetical protein; SPTR: YD repeat protein
YP_004345903.1	KEGG: tmt:Tmath_0797 extracellular solute-binding protein family 1; SPTR:  uncharacterized protein
YP_004345904.1	KEGG: sga:GALLO_1642 ribosomal protein L1; SPTR:  uncharacterized protein
YP_004345905.1	KEGG: dfe:Dfer_3342 hypothetical protein; SPTR:  uncharacterized protein
YP_004345906.1	InterPro IPR011721; KEGG: dfe:Dfer_3341 protein of unknown function DUF1486; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02096; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related
YP_004345907.1	InterPro IPR011497:IPR002350; KEGG: tps:THAPSDRAFT_23813 hypothetical protein; PFAM: Protease inhibitor, Kazal-type; SMART: Proteinase inhibitor I1, Kazal; SPTR: Kazal-type serine proteinase inhibitor; PFAM: Kazal-type serine protease inhibitor domain
YP_004345908.1	COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: pmx:PERMA_1766 peptidase M28; PFAM: Peptidase M28; SPTR: Peptidase M28; PFAM: Peptidase M28
YP_004345909.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: cts:Ctha_2584 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase
YP_004345910.1	KEGG: dtu:Dtur_1286 lipoprotein, SPTR:  uncharacterized protein
YP_004345911.1	COGs: COG0335 Ribosomal protein L19; HAMAP: Ribosomal protein L19; InterPro IPR001857; KEGG: fjo:Fjoh_2182 50S ribosomal protein L19; PFAM: Ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_004345912.1	InterPro IPR008503; KEGG: sli:Slin_6088 protein of unknown function DUF785; PFAM: Protein of unknown function DUF785; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF785)
YP_004345913.1	COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR013651:IPR004666; KEGG: gfo:GFO_3175 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type; SPTR: Ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; PFAM: RimK-like ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic; alpha-L-glutamate ligases, RimK family
YP_004345914.1	COGs: COG3608 deacylase; InterPro IPR007036; KEGG: zpr:ZPR_0181 succinylglutamate desuccinylase / aspartoacylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; SPTR:  uncharacterized protein; PFAM: Succinylglutamate desuccinylase / Aspartoacylase
YP_004345915.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: dat:HRM2_23420 rRNA methylase-family protein; PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: rRNA methylase-family protein; PFAM: SpoU rRNA Methylase
YP_004345916.1	COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: chu:CHU_1799 hypothetical protein; PFAM: PKD; SMART: PKD; SPTR:  uncharacterized protein; PFAM: PKD domain
YP_004345917.1	InterPro IPR019861; KEGG: chu:CHU_3655 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345918.1	InterPro IPR000601; KEGG: chu:CHU_1906 CHU large protein, SAP or adhesin AidA-related; PFAM: PKD; SMART: PKD; SPTR: CHU large protein, possible SAP or adhesin AidA-related; PFAM: PKD domain
YP_004345919.1	InterPro IPR019861; KEGG: phe:Phep_3745 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004345920.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: cpi:Cpin_0547 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004345921.1	KEGG: tde:TDE2591 rhodanese-like domain-containing protein; SPTR: Rhodanese-like domain protein; PFAM: Rhodanese-like domain
YP_004345922.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: cpi:Cpin_6933 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004345923.1	KEGG: pyo:PY07525 hypothetical protein; SPTR:  uncharacterized protein PY07525
YP_004345924.1	COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: dfe:Dfer_2897 O-methyltransferase 3; PFAM: O-methyltransferase, family 3; PRIAM: Caffeoyl-CoA O-methyltransferase; SPTR: O-methyltransferase 3; PFAM: O-methyltransferase
YP_004345925.1	KEGG: gym:GYMC10_2724 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1569)
YP_004345926.1	KEGG: gbm:Gbem_2572 hypothetical protein; SPTR:  uncharacterized protein
YP_004345927.1	KEGG: gfo:GFO_2597 secreted protein; SPTR:  uncharacterized protein
YP_004345928.1	COGs: COG0388 amidohydrolase; InterPro IPR000182:IPR003010; KEGG: cts:Ctha_0190 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase
YP_004345929.1	KEGG: snp:SPAP_0620 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Preprotein translocase subunit SecB
YP_004345930.1	KEGG: cpy:Cphy_3827 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; SPTR: Polynucleotide adenylyltransferase/metal dependent phosphohydrolase
YP_004345931.1	KEGG: pbe:PB001044.03.0 hypothetical protein; SPTR:  uncharacterized protein
YP_004345932.1	COGs: COG2357 conserved hypothetical protein; InterPro IPR007685; KEGG: sat:SYN_01575 RelA / SpoT related protein; PFAM: RelA/SpoT; SPTR: RelA / spoT related protein; PFAM: Region found in RelA / SpoT proteins
YP_004345933.1	InterPro IPR014284; KEGG: phe:Phep_2931 RNA polymerase sigma factor, sigma-70 family; SPTR: RNA polymerase, sigma-E factor; heat shock and oxidative stress; TIGRFAM: RNA polymerase sigma-70; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345934.1	KEGG: api:100164870 similar to chromodomain helicase DNA binding protein; SPTR:  uncharacterized protein
YP_004345935.1	COGs: COG2836 conserved hypothetical protein; KEGG: cpi:Cpin_0686 hypothetical protein; SPTR:  uncharacterized protein
YP_004345936.1	KEGG: fjo:Fjoh_2540 hypothetical protein; SPTR:  uncharacterized protein; PFAM: FixH
YP_004345937.1	COGs: COG0348 Polyferredoxin; InterPro IPR014116; KEGG: zpr:ZPR_2304 probable iron-sulfur protein; SPTR: Probable ferredoxin; TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG
YP_004345938.1	InterPro IPR003088; KEGG: rbi:RB2501_04165 cytochrome-c oxidase FixP chain; PFAM: Cytochrome c, class I; SPTR: Cytochrome c, mono-and diheme variant; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III
YP_004345939.1	KEGG: chu:CHU_1139 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Cbb3-type cytochrome oxidase component FixQ
YP_004345940.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR003468:IPR004677; KEGG: chu:CHU_1138  bifunctional cbb3-type cytochrome c oxidase subunit I/II; PFAM: Cytochrome c oxidase, monohaem subunit/FixO; Cytochrome c oxidase, subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome c oxidase, cbb3-type; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I
YP_004345941.1	InterPro IPR004714; KEGG: fbc:FB2170_03690 hypothetical protein; PFAM: Cytochrome oxidase maturation protein cbb3-type; SPTR:  uncharacterized protein; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type
YP_004345942.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR011545:IPR001650:IPR014001; KEGG: cat:CA2559_09353 ATP-dependent RNA helicase, DEAD/DEAH box family protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase, DEAD/DEAH box family protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_004345943.1	COGs: COG2217 Cation transport ATPase; InterPro IPR008250:IPR005834; KEGG: gfo:GFO_1431 heavy metal-transporting P-type ATPase-most likely copper-transporting; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Cu(I)-translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004345944.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197:IPR010723:IPR004558:IPR006638; KEGG: coc:Coch_1957 coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase
YP_004345945.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: cpi:Cpin_0678 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004345946.1	KEGG: dfe:Dfer_4967 hypothetical protein; SPTR:  uncharacterized protein
YP_004345947.1	COGs: COG0748  heme iron utilization protein; InterPro IPR011576; KEGG: hdu:HD0620 heme binding protein; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; SPTR: HugZ; PFAM: Pyridoxamine 5'-phosphate oxidase
YP_004345948.1	COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR010161; KEGG: cpi:Cpin_6480 peptidase T; PFAM: Peptidase M20; Peptidase M20, dimerisation; PRIAM: Tripeptide aminopeptidase; SPTR: Peptidase T; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: peptidase T
YP_004345949.1	COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: cag:Cagg_2502 aminotransferase class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Isopenicillin-N epimerase; SPTR: Aminotransferase class V; PFAM: Aminotransferase class-V
YP_004345950.1	COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: cpi:Cpin_6268 shikimate kinase; PFAM: Shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase
YP_004345951.1	KEGG: cob:COB47_0027 hypothetical protein; SPTR:  uncharacterized protein
YP_004345952.1	InterPro IPR002931; KEGG: dol:Dole_2528 hypothetical protein; PFAM: Transglutaminase-like; SPTR:  uncharacterized protein; PFAM: Transglutaminase-like superfamily
YP_004345953.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003660:IPR010822:IPR001932; KEGG: glo:Glov_2114 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases, ; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE)
YP_004345954.1	COGs: COG3975 protease with the C-terminal PDZ domain; InterPro IPR007963:IPR001478; KEGG: phe:Phep_3734 peptidase M61 domain protein; PFAM: Peptidase M61; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Peptidase M61 domain protein; PFAM: M61 glycyl aminopeptidase; PDZ domain (Also known as DHR or GLGF)
YP_004345955.1	COGs: COG3512 conserved hypothetical protein; InterPro IPR019199:IPR021127; KEGG: fps:FP1526 CRISPR-associated Cas2 family protein; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; SPTR:  uncharacterized protein; TIGRFAM: CRISPR associated protein Cas2; manually curated; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2
YP_004345956.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729:IPR019855; KEGG: bfs:BF3951 hypothetical protein; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, NMENI subtype; CRISPR-associated endonuclease Cas1
YP_004345957.1	COGs: COG3943 Virulence protein; InterPro IPR003812:IPR006440; KEGG: hit:NTHI1631 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Virulence protein; TIGRFAM: Death-on-curing protein; PFAM: Fic/DOC family; TIGRFAM: death-on-curing family protein
YP_004345958.1	InterPro IPR012912; KEGG: kol:Kole_0088 plasmid pRiA4b ORF-3 family protein; PFAM: Plasmid pRiA4b ORF-3-like; SPTR:  uncharacterized protein; PFAM: Plasmid pRiA4b ORF-3-like protein
YP_004345959.1	COGs: COG3513 conserved hypothetical protein; InterPro IPR010145; KEGG: fsu:Fisuc_0140 CRISPR-associated protein, Csn1 family; SPTR: Csn1 family CRISPR-associated protein; TIGRFAM: CRISPR-associated protein, SAG0894; TIGRFAM: CRISPR-associated protein, Csn1 family
YP_004345960.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR002942:IPR006145:IPR000748; KEGG: sdn:Sden_1748 23S rRNA pseudouridine synthase F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004345961.1	KEGG: cal:CaO19.10584 endo-1,3-beta-glucanase; SPTR:  uncharacterized protein ENG1
YP_004345962.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764; KEGG: cph:Cpha266_2499 glycoside hydrolase 3 protein; PFAM: Glycoside hydrolase, family 3, N-terminal; SPTR: Beta-N-acetylglucosaminidase; PFAM: Glycosyl hydrolase 3 N terminal domain
YP_004345963.1	KEGG: cpi:Cpin_2587 hypothetical protein; SPTR:  uncharacterized protein
YP_004345964.1	COGs: COG1988 membrane-bound metal-dependent hydrolase; InterPro IPR007404; KEGG: gfo:GFO_0063 transmembrane metal-dependent hydrolase; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: Integral membrane protein; manually curated; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)
YP_004345965.1	COGs: COG2003 DNA repair protein; InterPro IPR001405; KEGG: fbc:FB2170_02610  DNA repair protein; PFAM: Uncharacterised protein family, RadC-like; SPTR:  DNA repair protein; TIGRFAM: Uncharacterised protein family, RadC-like; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_004345966.1	KEGG: rbi:RB2501_09785 hypothetical protein; SPTR:  uncharacterized protein
YP_004345967.1	InterPro IPR014982; KEGG: coc:Coch_0064 GSCFA domain protein; PFAM: GSCFA; SPTR: GSCFA domain protein; PFAM: GSCFA family
YP_004345968.1	KEGG: dfe:Dfer_5691 PKD domain containing protein; SPTR: PKD domain containing protein
YP_004345969.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: gfo:GFO_3248 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004345970.1	COGs: COG0039 Malate/lactate dehydrogenase; HAMAP: Malate dehydrogenase, NAD-dependent; InterPro IPR011275:IPR001236; KEGG: fba:FIC_02092 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; PRIAM: L-lactate dehydrogenase; SPTR: Malate dehydrogenase; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_004345971.1	KEGG: fps:FP0660 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345972.1	COGs: COG0254 Ribosomal protein L31; HAMAP: 50S ribosomal protein L31 type B; InterPro IPR002150; KEGG: cpi:Cpin_6211 ribosomal protein L31; PFAM: Ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_004345973.1	KEGG: cbi:CLJ_B1859 KWG repeat protein; SPTR: KWG
YP_004345974.1	COGs: COG2746 Aminoglycoside N3'-acetyltransferase; InterPro IPR003679; KEGG: pjd:Pjdr2_6143 aminoglycoside N(3')-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase; SPTR: Aminoglycoside 3-N-acetyltransferase; PFAM: Aminoglycoside 3-N-acetyltransferase
YP_004345975.1	COGs: COG0447 Dihydroxynaphthoic acid synthase; InterPro IPR001753:IPR010198; KEGG: pgi:PG1523 naphthoate synthase; PFAM: Crotonase, core; PRIAM: Naphthoate synthase; SPTR: Naphthoate synthase; TIGRFAM: Naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase)
YP_004345976.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: bth:BT_2389  transport protein; PFAM: Mechanosensitive ion channel MscS; SPTR:  uncharacterized protein; PFAM: Mechanosensitive ion channel; Conserved TM helix
YP_004345977.1	COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: ppd:Ppro_1137 hypothetical protein; PFAM: Thioesterase superfamily; SPTR: Thioesterase; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_004345978.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489:IPR006390; KEGG: zpr:ZPR_0979 dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_004345979.1	InterPro IPR011630; KEGG: sli:Slin_2316 protein of unknown function DUF1599; PFAM: Protein of unknown function DUF1599; SPTR:  uncharacterized protein; PFAM: Domain of Unknown Function (DUF1599)
YP_004345980.1	InterPro IPR011637; KEGG: gfo:GFO_0431 hypothetical protein; PFAM: DoxX; SPTR:  uncharacterized protein; PFAM: DoxX
YP_004345981.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652; KEGG: sli:Slin_5608 triosephosphate isomerase; PFAM: Triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_004345982.1	COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: coc:Coch_1993 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR:  ribosomal protein L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_004345983.1	KEGG: chu:CHU_3275 hypothetical protein; SPTR:  uncharacterized protein
YP_004345984.1	COGs: COG0344 membrane protein; HAMAP: Protein of unknown function DUF205; InterPro IPR003811:IPR020788; KEGG: phe:Phep_1199 protein of unknown function DUF205; PFAM: Protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; TIGRFAM: Membrane protein YgiH; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase
YP_004345985.1	InterPro IPR011659; KEGG: tva:TVAG_268110 viral A-type inclusion protein; PFAM: WD40-like Beta Propeller; SPTR: Viral A-type inclusion protein, ; PFAM: WD40-like Beta Propeller Repeat
YP_004345986.1	InterPro IPR003769; KEGG: fps:FP1679 hypothetical protein; PFAM: Adaptor protein ClpS, core; SPTR: ATP-dependent Clp protease adaptor protein ClpS; PFAM: ATP-dependent Clp protease adaptor protein ClpS
YP_004345987.1	KEGG: ptm:GSPATT00001227001 hypothetical protein; SPTR: Chromosome undetermined scaffold_3, whole genome shotgun sequence
YP_004345988.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: cpi:Cpin_4460 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004345989.1	KEGG: nve:NEMVE_v1g225443 hypothetical protein; SPTR: Predicted protein
YP_004345990.1	KEGG: chu:CHU_0516 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004345991.1	KEGG: kfl:Kfla_4443 hypothetical protein; SPTR:  uncharacterized protein
YP_004345992.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: sli:Slin_3811  transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR:  transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain
YP_004345993.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: cpi:Cpin_5018  transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding-regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004345994.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rbi:RB2501_10797 rrf2 family protein ( transcriptional regulator); PFAM: Transcription regulator Rrf2; SPTR: Rrf2 family protein ( transcriptional regulator); TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_004345995.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: cpi:Cpin_5783 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I
YP_004345996.1	COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR003468:IPR003088; KEGG: dfe:Dfer_1787 cytochrome c oxidase mono-heme subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO; Cytochrome c, class I; SPTR: Cytochrome C oxidase mono-heme subunit/FixO; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II
YP_004345997.1	KEGG: fps:FP0918 hypothetical protein; SPTR:  uncharacterized protein
YP_004345998.1	KEGG: dfe:Dfer_1785 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004345999.1	COGs: COG2346 Truncated hemoglobins; KEGG: gfo:GFO_1394 globin family protein; SPTR: Bacterial-like globin family protein; PFAM: Bacterial-like globin
YP_004346000.1	KEGG: wch:wcw_0477 hypothetical protein; SPTR:  membrane protein
YP_004346001.1	COGs: COG3483 Tryptophan 2 3-dioxygenase (vermilion); InterPro IPR004981; KEGG: gfo:GFO_1393 tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase; SPTR: Tryptophan 2,3-dioxygenase; PFAM: Tryptophan 2,3-dioxygenase
YP_004346002.1	COGs: COG2846 Regulator of cell morphogenesis and NO signaling; InterPro IPR007500:IPR012312:IPR019903; KEGG: gfo:GFO_1401 nitric oxide-dependent regulator; PFAM: Protein of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif; SPTR: Nitric oxide-dependent regulator; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of Unknown function (DUF542); Hemerythrin HHE cation binding domain; TIGRFAM: iron-sulfur cluster repair di-iron protein
YP_004346003.1	KEGG: gfo:GFO_1402 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004346004.1	KEGG: scl:sce6995 hypothetical protein; SPTR: Hemolysin-type calcium-binding region protein; PFAM: Beta-propeller repeat
YP_004346005.1	COGs: COG0474 Cation transport ATPase; InterProIPR004014:IPR008250:IPR005834:IPR006068:IPR 001757; KEGG: fjo:Fjoh_4474 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; PRIAM: Calcium-transporting ATPase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Cation transporting ATPase, C-terminus; Cation transporter/ATPase, N-terminus; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004346006.1	COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: rbi:RB2501_04830 hypothetical protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase-like protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain
YP_004346007.1	InterPro IPR005144:IPR007560; KEGG: zpr:ZPR_3407  nuclease; PFAM: ATP-cone; Restriction endonuclease, type IV-like, Mrr; SPTR:  uncharacterized protein; PFAM: ATP cone domain; Restriction endonuclease
YP_004346008.1	KEGG: cpi:Cpin_5010 hypothetical protein; SPTR:  uncharacterized protein
YP_004346009.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fbc:FB2170_14468  universal stress protein UspA; PFAM: UspA; SPTR:  universal stress protein UspA; PFAM: Universal stress protein family
YP_004346010.1	InterPro IPR011637; KEGG: sen:SACE_3578  integral membrane protein; PFAM: DoxX; SPTR:  uncharacterized protein; manually curated; PFAM: DoxX
YP_004346011.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013767:IPR003661:IPR003594:IPR000014; KEGG: cpi:Cpin_5555 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; SPTR: PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004346012.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR001789:IPR000595:IPR001808; KEGG: dfe:Dfer_5316 transcriptional regulator, Crp/Fnr family; PFAM: Signal transduction response regulator, receiver domain; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Signal transduction response regulator, receiver domain; Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Response regulator receiver domain; Cyclic nucleotide-binding domain
YP_004346013.1	KEGG: cph:Cpha266_1006 hypothetical protein; SPTR:  uncharacterized protein
YP_004346014.1	COGs: COG0063 sugar kinase; InterPro IPR000631; KEGG: pdi:BDI_1900  sugar kinase; PFAM: Uncharacterised protein family, carbohydrate kinase-related; SPTR:  sugar kinase; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related
YP_004346015.1	KEGG: afl:Aflv_2570 flagellar capping protein; SPTR:  uncharacterized protein
YP_004346016.1	KEGG: fps:FP0879 hypothetical protein; SPTR:  uncharacterized protein
YP_004346017.1	COGs: COG3696  silver efflux pump; InterPro IPR001036:IPR003423:IPR004763; KEGG: chu:CHU_1512 cation efflux protein; PFAM: Acriflavin resistance protein; Outer membrane efflux protein; SPTR: Cation efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004346018.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_1511 membrane-fusion protein; SPTR: Possible membrane-fusion protein; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346019.1	KEGG: ter:Tery_3964 hypothetical protein; SPTR:  uncharacterized protein
YP_004346020.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_1571 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004346021.1	InterPro IPR002781; KEGG: fps:FP1502 hypothetical protein; PFAM: Protein of unknown function DUF81; SPTR:  uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004346022.1	KEGG: dgr:Dgri_GH15436 GH15436 gene product from transcript GH15436-RA; SPTR: GH15436
YP_004346023.1	InterPro IPR000601; KEGG: fps:FP0087 glycosyl hydrolase; PFAM: PKD; SMART: PKD; SPTR: Glycosyl hydrolase; PFAM: PKD domain
YP_004346024.1	KEGG: ddi:DDB_G0289975 hypothetical protein; SPTR: Peptidase M1 membrane alanine aminopeptidase
YP_004346025.1	COGs: COG1657 Squalene cyclase; InterPro IPR001330:IPR018333; KEGG: ddi:DDB_G0269226 cycloartenol synthase; PFAM: Prenyltransferase/squalene oxidase; PRIAM: Lanosterol synthase; SPTR: Cycloartenol synthase; TIGRFAM: Squalene cyclase; PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases
YP_004346026.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: cat:CA2559_01980  isoprenoid biosynthesis related protein; PFAM: Polyprenyl synthetase; PRIAM: Geranyltranstransferase; SPTR:  isoprenoid biosynthesis related protein; PFAM: Polyprenyl synthetase
YP_004346027.1	COGs: COG1577 Mevalonate kinase; InterPro IPR006204; KEGG: fps:FP0313 mevalonate kinase; PFAM: GHMP kinase; SPTR: Mevalonate kinase; PFAM: GHMP kinases N terminal domain
YP_004346028.1	COGs: COG3407 Mevalonate pyrophosphate decarboxylase; InterPro IPR006204:IPR005935; KEGG: gfo:GFO_3632 diphosphomevalonate decarboxylase; PFAM: GHMP kinase; SPTR: Diphosphomevalonate decarboxylase; TIGRFAM: Diphosphomevalonate decarboxylase; TIGRFAM: diphosphomevalonate decarboxylase
YP_004346029.1	COGs: COG1577 Mevalonate kinase; KEGG: cat:CA2559_04190 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004346030.1	COGs: COG1257 Hydroxymethylglutaryl-CoA reductase; InterPro IPR004553; KEGG: fba:FIC_02280 hydroxymethylglutaryl-CoA reductase; PRIAM: Hydroxymethylglutaryl-CoA reductase; SPTR:  uncharacterized protein; TIGRFAM: Hydroxymethylglutaryl-CoA reductase, class II/archaeal class I; PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative
YP_004346031.1	COGs: COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase; KEGG: rfe:RF_0785 isopentenyl pyrophosphate isomerase; PRIAM: Isopentenyl-diphosphate Delta-isomerase; SPTR: Isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2
YP_004346032.1	COGs: COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase; InterPro IPR002218:IPR013698; KEGG: ath:AT4G37760 SQE3 (squalene epoxidase 3); squalene monooxygenase; PFAM: Squalene epoxidase; Glucose-inhibited division protein A-related; PRIAM: Squalene monooxygenase; SPTR:  uncharacterized protein; PFAM: Squalene epoxidase
YP_004346033.1	COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060:IPR006449; KEGG: mbr:MONBRDRAFT_38891 hypothetical protein; PFAM: Squalene/phytoene synthase; PRIAM: Squalene synthase; SPTR: Squalene synthase; TIGRFAM: Farnesyl-diphosphate farnesyltransferase; PFAM: Squalene/phytoene synthase; TIGRFAM: farnesyl-diphosphate farnesyltransferase
YP_004346034.1	InterPro IPR003368:IPR006626; KEGG: fjo:Fjoh_2687 hypothetical protein; SPTR: Conserved repeat domain protein
YP_004346035.1	KEGG: dol:Dole_1790 polymorphic membrane protein; SPTR: Polymorphic outer membrane protein
YP_004346037.1	KEGG: cpy:Cphy_1356 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein
YP_004346038.1	KEGG: ptm:GSPATT00008345001 hypothetical protein; SPTR: Chromosome undetermined scaffold_21, whole genome shotgun sequence
YP_004346039.1	KEGG: bbe:BBR47_58950 hypothetical protein; SPTR:  uncharacterized protein
YP_004346040.1	KEGG: ter:Tery_3964 hypothetical protein; SPTR: Cell surface protein, ; PFAM: Beta-propeller repeat
YP_004346041.1	KEGG: fjo:Fjoh_5055 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004346042.1	KEGG: tet:TTHERM_00938920 hypothetical protein; SPTR:  uncharacterized protein
YP_004346043.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: fjo:Fjoh_5041 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346044.1	KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase; SPTR: Rifampin ADP-ribosylating transferase; PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase
YP_004346045.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: fbc:FB2170_14258 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; SPTR:  uncharacterized protein; PFAM: alpha/beta hydrolase fold
YP_004346046.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: chu:CHU_2392 transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator; PFAM: HxlR-like helix-turn-helix
YP_004346047.1	COGs: COG2761 dithiol-disulfide isomerase involved in polyketide biosynthesis; KEGG: chu:CHU_2391 dithiol-disulfide isomerase; SPTR:  uncharacterized protein; PFAM: DSBA-like thioredoxin domain
YP_004346048.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: coc:Coch_0484 nitroreductase; PFAM: Nitroreductase-like; SPTR: Possible 6,7-dihydropteridine reductase; PFAM: Nitroreductase
YP_004346049.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: fjo:Fjoh_0113 HxlR family transcriptional regulator; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix
YP_004346050.1	KEGG: mru:mru_0234 hypothetical protein; SPTR:  uncharacterized protein
YP_004346051.1	InterPro IPR001214; KEGG: gur:Gura_0949 hypothetical protein; PFAM: SET domain; SPTR:  uncharacterized protein; PFAM: SET domain
YP_004346052.1	KEGG: ptm:GSPATT00029476001 hypothetical protein; SPTR: Chromosome undetermined scaffold_111, whole genome shotgun sequence
YP_004346053.1	KEGG: gfo:GFO_3014 gliding motility protein GldL; SPTR:  uncharacterized protein
YP_004346054.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792; KEGG: cpi:Cpin_5158 transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family
YP_004346055.1	KEGG: noc:Noc_1227 ABC-type polysaccharide/polyol phosphate export systems permease component; SPTR:  uncharacterized protein
YP_004346056.1	KEGG: cpi:Cpin_1391 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3667)
YP_004346057.1	InterPro IPR004843; KEGG: cpi:Cpin_1753 metallophosphoesterase; PFAM: Metallophosphoesterase; SPTR: Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase
YP_004346058.1	COGs: COG3751 proline hydroxylase; InterPro IPR005123:IPR006620; KEGG: sli:Slin_4910 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; SPTR: 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_004346059.1	KEGG: pmz:HMPREF0659_A5626 cupin domain protein; SPTR:  uncharacterized protein
YP_004346060.1	KEGG: fba:FIC_01722 hypothetical protein; SPTR:  uncharacterized protein
YP_004346061.1	COGs: COG3655 transcriptional regulator protein; InterPro IPR001387; KEGG: fba:FIC_01723 DNA-binding protein; SMART: Helix-turn-helix type 3; SPTR: DNA-binding protein; PFAM: Helix-turn-helix
YP_004346062.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: amt:Amet_3366 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Ribosomal-protein-alanine N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346063.1	KEGG: gym:GYMC10_2654 protein of unknown function DUF1963; SPTR:  uncharacterized protein
YP_004346064.1	InterPro IPR000182; KEGG: hse:Hsero_2547 IAA acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: IAA acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346065.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR013655:IPR000792; KEGG: phe:Phep_4137 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; PAS fold-3; SMART: Transcription regulator LuxR, C-terminal; SPTR: Regulatory protein LuxR; PFAM: Bacterial regulatory proteins, luxR family; PAS fold
YP_004346067.1	KEGG: coc:Coch_0439 hypothetical protein; SPTR:  uncharacterized protein
YP_004346068.1	KEGG: fba:FIC_00612 two-component system sensor histidine kinase/response regulator; SPTR: Two-component system sensor histidine kinase/response regulator
YP_004346069.1	KEGG: fjo:Fjoh_1869 hypothetical protein; SPTR:  uncharacterized protein
YP_004346070.1	KEGG: bfo:BRAFLDRAFT_67302 hypothetical protein; SPTR:  uncharacterized protein
YP_004346071.1	COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: fjo:Fjoh_2623 rhodanese domain-containing protein; PFAM: Rhodanese-like; PRIAM: 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004346072.1	KEGG: mfa:Mfla_0528 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SPTR: Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S)
YP_004346073.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: chu:CHU_1082 OsmC-like family protein; PFAM: Peroxiredoxin, OsmC-like protein; SPTR: OsmC-like family protein; PFAM: OsmC-like protein
YP_004346074.1	KEGG: msu:MS2114 hypothetical protein; SPTR:  uncharacterized protein
YP_004346075.1	KEGG: tet:TTHERM_01035710 Formyl transferase; SPTR: Formyl transferase
YP_004346076.1	COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; KEGG: chu:CHU_2408 carbohydrate esterase 1 protein; SPTR: Esterase-related protein, carbohydrate esterase 1 protein; PFAM: Esterase PHB depolymerase
YP_004346077.1	KEGG: rno:100310875 taste receptor, type 2, member 110; SPTR: Taste receptor type 2 member 110
YP_004346078.1	KEGG: chu:CHU_2868 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2911)
YP_004346079.1	COGs: COG2890 Methylase of polypeptide chain release factors; KEGG: ant:Arnit_2010 polypeptide chain release factor methylase; SPTR: Methylase of polypeptide chain release factors; PFAM: Methyltransferase small domain
YP_004346080.1	COGs: COG2103 sugar phosphate isomerase; HAMAP: Glucokinase regulatory-like protein; InterPro IPR005488:IPR001347; KEGG: cpi:Cpin_6538 N-acetylmuramic acid-6-phosphate etherase; PFAM: Sugar isomerase (SIS); SPTR: Glucokinase regulatory-like protein; TIGRFAM: Glucokinase regulatory-like protein; PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase
YP_004346081.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: zpr:ZPR_0888 pyrimidine regulatory protein PyrR; PFAM: Phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase/pyrimidine operon attenuation protein; PFAM: Phosphoribosyl transferase domain
YP_004346082.1	COGs: COG4099 peptidase; InterPro IPR003140; KEGG: npu:Npun_F5261 dienelactone hydrolase; PFAM: Phospholipase/carboxylesterase; SPTR: Phospholipase/Carboxylesterase; PFAM: Phospholipase/Carboxylesterase
YP_004346083.1	InterPro IPR001440; KEGG: rmr:Rmar_0990 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004346084.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205:IPR006691:IPR005743; KEGG: zpr:ZPR_2593 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase subunit A; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit
YP_004346085.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR001943:IPR013093:IPR 019489:IPR003593; KEGG: sli:Slin_1370 ATPase AAA-2 domain protein; PFAM: ATPase, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase with chaperone activity ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); UvrB/uvrC motif
YP_004346086.1	KEGG: lba:Lebu_1548 hypothetical protein; SPTR: Glycogen debranching enzyme
YP_004346087.1	KEGG: cjd:JJD26997_0470 hypothetical protein; SPTR: Membrane protein
YP_004346088.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; InterPro IPR000672:IPR020630:IPR020631; KEGG: chu:CHU_1716 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methenyltetrahydrofolate cyclohydrolase; SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004346089.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027:IPR004099; KEGG: chu:CHU_3463 pyridine nucleotide-disulphide-related oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; PRIAM: Dihydrolipoyl dehydrogenase; SPTR: Pyridine nucleotide-disulphide-related oxidoreductase; manually curated; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004346090.1	InterPro IPR005358; KEGG: zpr:ZPR_1139 hypothetical protein; PFAM: Uncharacterised protein family UPF0153; SPTR:  uncharacterized protein; PFAM: Uncharacterised protein family (UPF0153)
YP_004346091.1	InterPro IPR000601; KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; PFAM: PKD; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004346092.1	KEGG: dde:Dde_3046 hypothetical protein; SPTR:  uncharacterized protein
YP_004346093.1	COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: gfo:GFO_3101 histone deacetylase; PFAM: Histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase; PFAM: Histone deacetylase domain
YP_004346094.1	KEGG: dth:DICTH_1875 hypothetical protein; SPTR: Diphosphomevalonate decarboxylase
YP_004346095.1	COGs: COG0584 Glycerophosphoryl diester phosphodiesterase; KEGG: chu:CHU_2752 glycerophosphodiester phosphodiesterase, cytosolic; SPTR: Glycerophosphodiester phosphodiesterase, cytosolic; PFAM: Glycerophosphoryl diester phosphodiesterase
YP_004346096.1	COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950; KEGG: bfs:BF3783  translation initation factor; PFAM: Translation initiation factor SUI1; SPTR:  translation initation factor; PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic
YP_004346097.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; HAMAP: Bifunctional protein pyrR; InterPro IPR000836; KEGG: phe:Phep_1174 uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; pyrimidine operon attenuation protein; PFAM: Phosphoribosyl transferase domain
YP_004346098.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; HAMAP: Aspartate carbamoyltransferase, eukaryotic; InterPro IPR002082:IPR006132:IPR006131; KEGG: phe:Phep_1173 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_004346099.1	InterPro IPR002645:IPR003658; KEGG: chu:CHU_1913 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); PFAM: Sulphate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004346100.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; HAMAP: Ribonuclease Z; InterPro IPR013471; KEGG: fjo:Fjoh_4543 ribonuclease Z; SPTR: Ribonuclease Z; TIGRFAM: Ribonuclease Z; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z
YP_004346101.1	KEGG: sli:Slin_5238 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1572)
YP_004346102.1	KEGG: pru:PRU_2322 hemolysin A; SPTR: Hemolysin A
YP_004346103.1	COGs: COG3176  hemolysin; InterPro IPR002123; KEGG: pdi:BDI_2495 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR:  uncharacterized protein; PFAM: Acyltransferase
YP_004346104.1	KEGG: fjo:Fjoh_1697 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004346105.1	InterPro IPR012910:IPR000531; KEGG: phe:Phep_2553 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR:  TonB-dependent outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004346106.1	COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterProIPR004532:IPR002547:IPR005146:IPR005147:IPR 005121; KEGG: zpr:ZPR_1201 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding domain; tRNA synthetase, B5; Phenylalanyl-tRNA synthetase, beta subunit, ferrodoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_004346107.1	COGs: COG0132 Dethiobiotin synthetase; HAMAP: Dethiobiotin synthase; InterPro IPR004472; KEGG: fps:FP2329 dethiobiotin synthetase; SPTR: Dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; TIGRFAM: dethiobiotin synthase
YP_004346108.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005814:IPR005815; KEGG: sli:Slin_5888 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; PRIAM: Adenosylmethionine--8-amino-7-oxononanoate transaminase; SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_004346109.1	InterPro IPR000866; KEGG: cpy:Cphy_1851 cytochrome c biogenesis protein transmembrane region; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR:  uncharacterized protein; PFAM: AhpC/TSA family
YP_004346110.1	KEGG: mmb:Mmol_1964 hypothetical protein; SPTR:  uncharacterized protein
YP_004346111.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: zpr:ZPR_3907 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: Probable RNA polymerase sigma factor 24; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, TIGR02943 family; RNA polymerase sigma factor, sigma-70 family
YP_004346112.1	COGs: COG1289 membrane protein; KEGG: phe:Phep_2166 protein of unknown function DUF893 YccS/YhfK; SPTR:  uncharacterized protein; PFAM: Fusaric acid resistance protein family
YP_004346113.1	InterPro IPR006652; KEGG: sli:Slin_1887 kelch repeat-containing protein; PFAM: Kelch repeat type 1; SMART: Kelch repeat type 1; SPTR:  uncharacterized protein; PFAM: Kelch motif
YP_004346114.1	KEGG: pop:POPTR_676402 hypothetical protein; SPTR: Predicted protein
YP_004346115.1	KEGG: ddi:DDB_G0273007 beta-ketoacyl synthase; SPTR: Probable polyketide synthase 15
YP_004346116.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: fba:FIC_00701 aminotransferase class-III; PFAM: Aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Acetylornithine aminotransferase; PFAM: Aminotransferase class-III
YP_004346117.1	KEGG: fjo:Fjoh_4777 hypothetical protein; SPTR:  uncharacterized protein
YP_004346118.1	KEGG: pyo:PY01954 hypothetical protein; SPTR:  uncharacterized protein
YP_004346119.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fps:FP0623 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR:  uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346120.1	COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: phe:Phep_0873 transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; PRIAM: 1-deoxy-D-xylulose-5-phosphate synthase; SPTR: Transketolase central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004346121.1	InterPro IPR002035; KEGG: sun:SUN_2020 hypothetical protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; SPTR:  uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_004346122.1	COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: cpi:Cpin_0391 transketolase domain protein; PFAM: Transketolase, N-terminal; PRIAM: Transketolase; SPTR: Transketolase; PFAM: Transketolase, thiamine diphosphate binding domain
YP_004346123.1	KEGG: lsa:LSA0534 hypothetical protein; SPTR: Hypothetical cell surface protein (With LPQTG sorting signal)
YP_004346124.1	InterPro IPR002884; KEGG: cat:CA2559_00775 iron-regulated protein FrpC; PFAM: Proprotein convertase, P; SPTR:  uncharacterized protein
YP_004346125.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: fps:FP1470 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_004346126.1	InterPro IPR007730; KEGG: ngr:NAEGRDRAFT_81603 hypothetical protein; PFAM: Sporulation related domain; SPTR: Predicted protein; PFAM: Sporulation related domain
YP_004346127.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: rbi:RB2501_06985 metallo-beta-lactamase superfamily protein; SPTR: Metallo-beta-lactamase superfamily protein; PFAM: Metallo-beta-lactamase superfamily
YP_004346128.1	COGs: COG0117 Pyrimidine deaminase; InterPro IPR002125:IPR002734:IPR004794; KEGG: coc:Coch_0515 riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Riboflavin biosynthesis protein RibD; TIGRFAM: Riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_004346129.1	InterPro IPR011701; KEGG: sli:Slin_3632 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; SPTR:  uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_004346130.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: bav:BAV2218 aerobic C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter; SPTR: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter family
YP_004346131.1	COGs: COG2910  NADH-flavin reductase; InterPro IPR001509; KEGG: fjo:Fjoh_0815  NADH-flavin reductase-like protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR:  uncharacterized protein; PFAM: NmrA-like family
YP_004346132.1	KEGG: cpi:Cpin_0130 hypothetical protein; SPTR:  uncharacterized protein
YP_004346133.1	InterPro IPR013096; KEGG: cpi:Cpin_4406 cupin 2 conserved barrel domain protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2 conserved barrel domain protein; PFAM: Cupin domain
YP_004346134.1	KEGG: cpi:Cpin_4592 hypothetical protein; SPTR:  uncharacterized protein
YP_004346135.1	KEGG: cpi:Cpin_2276 hypothetical protein; SPTR: Glucan endo-1,3-beta-D-glucosidase
YP_004346136.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265:IPR005759; KEGG: fps:FP1101 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD domain; SPTR: Endonuclease III; TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_004346137.1	KEGG: spl:Spea_1650 hypothetical protein; SPTR:  uncharacterized protein
YP_004346138.1	KEGG: zpr:ZPR_1583 hypothetical protein; SPTR:  uncharacterized protein
YP_004346139.1	KEGG: phe:Phep_2499 hypothetical protein; SPTR:  uncharacterized protein
YP_004346140.1	COGs: COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit; InterPro IPR001017:IPR005475:IPR005476; KEGG: fps:FP0719  pyruvate/branched-chain alpha-keto acid dehydrogenase (E1) component, alpha and beta subunits; PFAM: Transketolase, C-terminal; Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; SPTR: Transketolase; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004346141.1	KEGG: rba:RB4547 ankyrin protein; SPTR: Similar to ankyrin homolog [precursor]
YP_004346142.1	COGs: COG1983  stress-responsive transcriptional regulator protein; InterPro IPR007168; KEGG: fjo:Fjoh_0196 phage shock protein C, PspC; PFAM: PspC; SPTR: Phage shock protein C, PspC; PFAM: PspC domain
YP_004346143.1	COGs: COG1695 transcriptional regulator protein; InterPro IPR005149; KEGG: fbc:FB2170_14378  PadR-family transcriptional regulatory protein; PFAM: Transcription regulator PadR N-terminal-like; SPTR:  uncharacterized protein; PFAM: Transcriptional regulator PadR-like family
YP_004346144.1	COGs: COG0539 Ribosomal protein S1; InterPro IPR003029; KEGG: pdi:BDI_2619 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA binding domain; SPTR: Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_004346145.1	KEGG: mxa:MXAN_0411 hypothetical protein; SPTR:  uncharacterized protein
YP_004346146.1	InterPro IPR000601; KEGG: chu:CHU_2225 gliding motility-related protein; adhesin AidA-related; SPTR: CHU large protein; gliding motility-related protein; possible adhesin AidA-related
YP_004346147.1	COGs: COG2907 NAD/FAD-binding protein; InterPro IPR013027; KEGG: hba:Hbal_1323 amine oxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Amine oxidase; PFAM: Flavin containing amine oxidoreductase
YP_004346148.1	KEGG: dal:Dalk_3482 amidophosphoribosyltransferase; SPTR:  uncharacterized protein
YP_004346149.1	KEGG: ath:AT3G15840 PIFI (post-illumination chlorophyll fluorescence increase); SPTR:  uncharacterized protein At3g15840.3
YP_004346150.1	KEGG: ter:Tery_3964 hypothetical protein; SPTR: Cell surface protein
YP_004346151.1	KEGG: cat:CA2559_01455 cell wall associated biofilm protein; SPTR: Cell wall associated biofilm protein
YP_004346152.1	KEGG: ter:Tery_0387 cadherin; SPTR: Cell surface protein
YP_004346153.1	KEGG: pfh:PFHG_00071 conserved hypothetical protein; SPTR: Histone deacetylase
YP_004346154.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR011123:IPR010559:IPR003594; KEGG: dfe:Dfer_1280 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator three Y; Two component regulator propeller; ATPase-like, ATP-binding domain; SPTR: Histidine kinase; PFAM: Histidine kinase; Two component regulator propeller
YP_004346155.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: chu:CHU_0254 response regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR:  uncharacterized protein; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004346156.1	KEGG: mbn:Mboo_2227 hypothetical protein; SPTR: DAACS family dicarboxylate/amino acid:cation Na+ or H+ symporter
YP_004346157.1	COGs: COG1533 DNA repair photolyase; InterPro IPR006638:IPR007197; KEGG: gfo:GFO_3214 radical SAM superfamily protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM superfamily protein; PFAM: Radical SAM superfamily
YP_004346158.1	COGs: COG3224 conserved hypothetical protein; InterPro IPR007138; KEGG: dfe:Dfer_4195 hypothetical protein; PFAM: Antibiotic biosynthesis monooxygenase; SPTR:  uncharacterized protein; PFAM: Antibiotic biosynthesis monooxygenase
YP_004346159.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR019734:IPR003661:IPR003594:IPR001789:IPR 018060:IPR001440:IPR000005; KEGG: rbi:RB2501_14219  two-component system sensor kinase/response regulator fusion protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Tetratricopeptide TPR-1; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Tetratricopeptide repeat; Helix-turn-helix, AraC domain; SPTR: Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004346160.1	KEGG: chu:CHU_1456 hypothetical protein; SPTR: CHU large protein; uncharacterized
YP_004346161.1	InterPro IPR018060:IPR000005; KEGG: fba:FIC_01251 transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: AraC family helix-turn-helix domain protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004346162.1	KEGG: fjo:Fjoh_3953 hypothetical protein; SPTR:  uncharacterized protein
YP_004346163.1	InterPro IPR010221; KEGG: cpi:Cpin_3623 outer membrane adhesin like protein; SPTR:  SD repeat protein; TIGRFAM: VCBS repeat
YP_004346164.1	InterPro IPR019861; KEGG: rbi:RB2501_02015 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004346165.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: sli:Slin_1311 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family
YP_004346166.1	InterPro IPR006626:IPR003368; KEGG: cat:CA2559_10338 probable extracellular nuclease; PFAM: Polymorphic membrane protein, Chlamydia; SPTR: Probable extracellular nuclease; TIGRFAM: Polymorphic membrane protein, Chlamydia
YP_004346167.1	KEGG: fjo:Fjoh_2687 hypothetical protein; SPTR: Conserved repeat domain protein
YP_004346168.1	KEGG: lbf:LBF_1051 hypothetical protein; SPTR:  uncharacterized protein
YP_004346169.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: fjo:Fjoh_2146  esterase; PFAM:  esterase; SPTR:  esterase; PFAM:  esterase
YP_004346170.1	KEGG: chu:CHU_2378 hypothetical protein; SPTR:  uncharacterized protein
YP_004346171.1	COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: phe:Phep_2736 beta-lactamase; PFAM: Beta-lactamase-related; SPTR: Beta-lactamase; PFAM: Beta-lactamase
YP_004346172.1	KEGG: mca:MCA0825 AraC family transcriptional regulator; SPTR:  uncharacterized protein
YP_004346173.1	KEGG: dth:DICTH_0216 hypothetical protein; SPTR:  uncharacterized protein
YP_004346174.1	KEGG: dtu:Dtur_0793 protein of unknown function DUF610 YibQ
YP_004346175.1	KEGG: pwa:Pecwa_1722 RimK domain protein ATP-grasp; SPTR:  uncharacterized protein; PFAM: RimK-like ATP-grasp domain
YP_004346176.1	KEGG: tet:TTHERM_00254500 TPR Domain containing protein; SPTR: TPR Domain containing protein
YP_004346177.1	KEGG: sgr:SGR_6387  catalase/peroxidase; SPTR: Catalase-peroxidase
YP_004346178.1	KEGG: ani:AN9170.2 hypothetical protein; SPTR:  uncharacterized protein
YP_004346179.1	KEGG: fjo:Fjoh_3600 hypothetical protein; SPTR:  uncharacterized protein
YP_004346180.1	KEGG: bph:Bphy_6798 hypothetical protein; SPTR:  uncharacterized protein
YP_004346181.1	KEGG: tva:TVAG_056570 hypothetical protein; SPTR:  uncharacterized protein
YP_004346182.1	KEGG: cel:F42D1.3 Sex Peptide Receptor (Drosophila) Related family member (sprr-2); SPTR: Protein F42D1.3, confirmed by transcript evidence; PFAM: Protein of unknown function (DUF3761)
YP_004346183.1	InterPro IPR000504; KEGG: hoh:Hoch_6779 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding region protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
YP_004346184.1	COGs: COG1970 Large-conductance mechanosensitive channel; InterPro IPR001185; KEGG: coc:Coch_1956 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_004346185.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); HAMAP: RecR protein; InterPro IPR006154:IPR015967:IPR006171:IPR000093; KEGG: phe:Phep_3028 recombination protein RecR; SMART: Toprim domain, subgroup; SPTR: Recombination protein RecR; TIGRFAM: RecR protein; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_004346186.1	KEGG: dfe:Dfer_5195 hypothetical protein; SPTR:  uncharacterized protein
YP_004346187.1	COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: bvu:BVU_2527 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_004346188.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: npu:Npun_R0986 heat shock protein DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR:  uncharacterized protein; PFAM: DnaJ domain
YP_004346189.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: fps:FP1601 O-succinylbenzoate--CoA ligase; SPTR:  uncharacterized protein; PFAM: AMP-binding enzyme
YP_004346190.1	InterPro IPR013766; KEGG: dfe:Dfer_3953 thioredoxin domain; PFAM: Thioredoxin domain; SPTR: Thioredoxin domain; PFAM: Thioredoxin
YP_004346191.1	KEGG: coc:Coch_0253 secreted protein containing glycosyl hydrolase BNR repeats; SPTR:  oxidoreductase ( secreted protein)
YP_004346192.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: cat:CA2559_13223  LipD A biosynthesis related exported protein; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR:  lipd A biosynthesis related exported protein; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_004346193.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: zpr:ZPR_3888 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: Recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C terminal; ATPase associated with various cellular activities (AAA)
YP_004346194.1	COGs: COG1678  transcriptional regulator protein; InterPro IPR003774; KEGG: dfe:Dfer_4074 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; SPTR:  uncharacterized protein; PFAM: Uncharacterized ACR, COG1678
YP_004346195.1	KEGG: bvu:BVU_4149 hypothetical protein; SPTR: Conserved hypothetical exported protein; manually curated
YP_004346196.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: cat:CA2559_11083  exported N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; SPTR:  uncharacterized protein; manually curated; PFAM: N-acetylmuramoyl-L-alanine amidase
YP_004346197.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: coc:Coch_2113 mammalian cell entry related domain protein; PFAM: Mammalian cell entry related; SPTR: Mammalian cell entry related domain protein; PFAM: mce related protein
YP_004346198.1	COGs: COG0247 Fe-S oxidoreductase; KEGG: cat:CA2559_11073 iron-sulfur protein; SPTR:  iron-sulphur-binding reductase
YP_004346199.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR004017; KEGG: fjo:Fjoh_4582 hypothetical protein; PFAM: Cysteine-rich domain; SPTR:  uncharacterized protein; PFAM: Cysteine-rich domain
YP_004346200.1	KEGG: cat:CA2559_11053 hypothetical protein; SPTR:  uncharacterized protein
YP_004346201.1	KEGG: cpi:Cpin_2055 hypothetical protein; SPTR:  uncharacterized protein
YP_004346202.1	COGs: COG1770 Protease II; InterPro IPR004106; KEGG: cat:CA2559_08101 peptidase S9, prolyl oligopeptidase active site region; PFAM: Peptidase S9A, oligopeptidase, N-terminal beta-propeller; PRIAM: Oligopeptidase B; SPTR: Peptidase S9, prolyl oligopeptidase active site region; PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase
YP_004346203.1	InterPro IPR013216; KEGG: coc:Coch_2186 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004346204.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: mrb:Mrub_1600 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004346205.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: chu:CHU_2574 RNA polymerase, sigma-E factor; heat shock and oxidative stress; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-E factor; heat shock and oxidative stress; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346206.1	KEGG: chu:CHU_3409 hypothetical protein; SPTR:  uncharacterized protein
YP_004346207.1	COGs: COG0167 Dihydroorotate dehydrogenase; HAMAP: Dihydroorotate dehydrogenase; InterPro IPR012135:IPR005719; KEGG: fjo:Fjoh_2210 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; PRIAM: Dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase; TIGRFAM: Dihydroorotate dehydrogenase, class 2; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2
YP_004346208.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891; KEGG: zpr:ZPR_0863 hydroxymethylglutaryl-CoA lyase-like protein; PFAM: Pyruvate carboxyltransferase; PRIAM: Hydroxymethylglutaryl-CoA lyase; SPTR: Hydroxymethylglutaryl-CoA lyase like protein; PFAM: HMGL-like
YP_004346209.1	KEGG: sye:Syncc9902_0725 outer membrane autotransporter barrel; SPTR:  uncharacterized protein
YP_004346210.1	KEGG: dan:Dana_GF20452 GF20452 gene product from transcript GF20452-RA; SPTR: Xylose isomerase domain-containing protein
YP_004346211.1	KEGG: edi:EDI_276490 hypothetical protein; SPTR:  lipoprotein
YP_004346212.1	KEGG: pkn:PKH_070730 helicase with zn-finger motif; SPTR: Helicase with zn-finger motif
YP_004346213.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: fjo:Fjoh_1314 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: SusC-like TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004346214.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020828:IPR020829:IPR006424; KEGG: cat:CA2559_12783 glyceraldehyde 3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_004346215.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterProIPR009042:IPR007627:IPR007624:IPR007630:IPR 014284; KEGG: bth:BT_1311 RNA polymerase sigma factor RpoD (sigma-A); PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; SPTR:  uncharacterized protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346216.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254:IPR011782; KEGG: chu:CHU_0052 serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF; SPTR: Serine protease, HtrA/DegQ/DegS family; TIGRFAM: Peptidase S1C, Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004346217.1	COGs: COG0253 Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; InterPro IPR001653; KEGG: cpi:Cpin_4694 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; PRIAM: Diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: Diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_004346218.1	KEGG: ter:Tery_1511 RNAse R; SPTR: RNAse R
YP_004346219.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: fps:FP1214 ribosomal-protein-amino-adic N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR:  uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_004346220.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: fbc:FB2170_13498 hypothetical protein; PFAM: Uncharacterised protein family YceG-like; SPTR:  uncharacterized protein; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_004346221.1	COGs: COG1446 Asparaginase; InterPro IPR000246:IPR006311; KEGG: fjo:Fjoh_2037 N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; PFAM: Peptidase T2, asparaginase 2; PRIAM:N(4)-(beta-N-acetylglucosaminyl)-L-asparagina se; SPTR: Asparaginase; PFAM: Asparaginase
YP_004346222.1	COGs: COG3250 Beta-galactosidase/beta-glucuronidase; InterPro IPR006104; KEGG: cpi:Cpin_7055 glycoside hydrolase 2 sugar binding; PFAM: Glycoside hydrolase 2, carbohydrate-binding; PRIAM: Beta-mannosidase; SPTR: Beta-mannosidase; manually curated; PFAM: Glycosyl hydrolases family 2, sugar binding domain
YP_004346223.1	COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: sli:Slin_0365 transcriptional regulator, MarR family; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; SPTR: Transcriptional regulator, MarR family; PFAM: MarR family
YP_004346224.1	COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_2514 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor, ; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_004346226.1	COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR006935; KEGG: rbi:RB2501_14989 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR:  uncharacterized protein; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit
YP_004346227.1	KEGG: ant:Arnit_1509 type 1 secretion target domain-containing protein; SPTR: Type 1 secretion target domain protein
YP_004346228.1	KEGG: nfa:nfa56440 hypothetical protein; SPTR:  uncharacterized protein
YP_004346229.1	KEGG: sli:Slin_6205 hypothetical protein; SPTR:  uncharacterized protein
YP_004346230.1	KEGG: cvi:CV_0597 hypothetical protein; SPTR:  uncharacterized protein
YP_004346231.1	KEGG: chu:CHU_3359 hypothetical protein; SPTR:  uncharacterized protein
YP_004346232.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: pdi:BDI_1269  ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family
YP_004346233.1	COGs: COG4628 conserved hypothetical protein; InterPro IPR018668; KEGG: fjo:Fjoh_3441 hypothetical protein; PFAM: Protein of unknown function DUF2132; SPTR:  uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2132)
YP_004346234.1	COGs: COG2195 Di- and tripeptidase; InterPro IPR002933:IPR011650:IPR001160; KEGG: phe:Phep_2364 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase; PFAM: Peptidase M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase
YP_004346235.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: fbc:FB2170_14178 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Signal Transduction Histidine Kinase; PFAM: Histidine kinase
YP_004346236.1	COGs: COG3530 conserved hypothetical protein; KEGG: cat:CA2559_08466 hypothetical protein; SPTR:  uncharacterized protein
YP_004346237.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: fbc:FB2170_05060  heat shock protein DnaJ; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Heat shock protein DnaJ-like; PFAM: DnaJ domain
YP_004346238.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: zpr:ZPR_0128 DnaJ domain-containing protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: Dna-J like membrane chaperone protein; PFAM: DnaJ domain
YP_004346239.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: coc:Coch_0826 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: DnaJ domain protein; PFAM: DnaJ domain
YP_004346241.1	InterPro IPR001387; KEGG: coc:Coch_1905 HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: HTH_3 family transcriptional regulator protein; PFAM: Helix-turn-helix
YP_004346242.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; HAMAP: tRNA-specific 2-thiouridylase; InterPro IPR004506; KEGG: fjo:Fjoh_2388 tRNA-specific 2-thiouridylase MnmA; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA-specific 2-thiouridylase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_004346243.1	KEGG: sli:Slin_0266 hypothetical protein; SPTR:  uncharacterized protein
YP_004346244.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: phe:Phep_1399 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ATPase; PFAM: ABC transporter transmembrane region; ABC transporter
YP_004346245.1	COGs: COG0334 Glutamate dehydrogenase/leucine dehydrogenase; InterPro IPR006097:IPR006096; KEGG: fps:FP0533 valine dehydrogenase; PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; PRIAM: Leucine dehydrogenase; SPTR: Leucine dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
YP_004346246.1	COGs: COG0781 Transcription termination factor; InterPro IPR006027; KEGG: pdi:BDI_1858  N utilization substance protein; PFAM: NusB/RsmB/TIM44; SPTR: NusB family protein; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_004346247.1	InterPro IPR011467; KEGG: sli:Slin_6328 protein of unknown function DUF1573; PFAM: Protein of unknown function DUF1573; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1573)
YP_004346248.1	COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: sli:Slin_6327 preprotein translocase, YajC subunit; PFAM: YajC; SPTR:  uncharacterized protein; TIGRFAM: YajC; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_004346249.1	COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR020616:IPR020617:IPR002155; KEGG: fba:FIC_00965 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; PRIAM: Acetyl-CoA C-acetyltransferase; SPTR: Acetyl-CoA acetyltransferase; TIGRFAM: Thiolase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004346250.1	KEGG: zpr:ZPR_0413 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3078); Protein of unknown function, DUF481
YP_004346251.1	KEGG: phe:Phep_0697 hypothetical protein; SPTR:  uncharacterized protein
YP_004346252.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: cpi:Cpin_1064 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein; PFAM: SPFH domain / Band 7 family
YP_004346253.1	KEGG: cbe:Cbei_1228 regulatory protein, LacI
YP_004346254.1	COGs: COG3590 metalloendopeptidase; InterPro IPR008753:IPR018497; KEGG: sli:Slin_4486 endothelin-converting enzyme 1; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal; PRIAM: Endothelin-converting enzyme 1; SPTR: Peptidase, M13 family (Lipoprotein); PFAM: Peptidase M13
YP_004346255.1	COGs: COG2153 acyltransferase; InterPro IPR000182; KEGG: fjo:Fjoh_3298 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346256.1	COGs: COG4799 Acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR000022; KEGG: fps:FP1002 carboxyltransferase; PFAM: Carboxyl transferase; PRIAM: Methylcrotonoyl-CoA carboxylase; SPTR: Propionyl-CoA carboxylase, beta subunit; PFAM: Carboxyl transferase domain
YP_004346257.1	COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: cpi:Cpin_5883 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004346258.1	KEGG: ton:TON_1763 dihydroorotase; SPTR:  uncharacterized protein
YP_004346259.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR001623; KEGG: coc:Coch_0826 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; SPTR: DnaJ domain protein; PFAM: DnaJ domain
YP_004346260.1	KEGG: cth:Cthe_2429 hypothetical protein; SPTR:  uncharacterized protein
YP_004346261.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR013249:IPR014284; KEGG: hoh:Hoch_4289 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; SPTR: Sigma-70, region 4 domain protein; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346262.1	KEGG: rbi:RB2501_12707 lipoprotein, SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2807)
YP_004346263.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027:IPR005982; KEGG: fjo:Fjoh_0199 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Thioredoxin-disulfide reductase; SPTR:  uncharacterized protein; TIGRFAM: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_004346264.1	COGs: COG3963 Phospholipid N-methyltransferase; InterPro IPR001737; KEGG: fps:FP0151 phospholipid N-methyltransferase; PFAM: Ribosomal RNA adenine methylase transferase; SPTR: Probable phospholipid N-methyltransferase; PFAM: Ribosomal RNA adenine dimethylase
YP_004346265.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR006680; KEGG: cat:CA2559_08046 dihydroorotase; PFAM: Amidohydrolase 1; SPTR: Dihydroorotase; PFAM: Amidohydrolase; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004346266.1	InterPro IPR011933; KEGG: phe:Phep_3186 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Double transmembrane domain; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain
YP_004346267.1	InterPro IPR014127; KEGG: fbc:FB2170_10686 hypothetical protein; PFAM: Conserved hypothetical protein CHP02757; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02757; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757
YP_004346268.1	KEGG: mfe:Mefer_0459 V-type ATP synthase subunit I; SPTR: V-type ATPase 116 kDa subunit
YP_004346269.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2735 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein ABC superfamily ATP binding cassette transporter, ABC protein; PFAM: ABC transporter
YP_004346270.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; HAMAP: DHBP synthase RibB; GTP cyclohydrolase II; InterPro IPR000422:IPR000926; KEGG: dfe:Dfer_4002 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; SPTR: 3,4-dihydroxy-2-butanone-4-phosphate synthase; TIGRFAM: DHBP synthase RibB; GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_004346271.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: chu:CHU_0930 A-glycosyltransferase; PFAM: Glycosyl transferase, group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase 4 protein; PFAM: Glycosyl transferases group 1
YP_004346272.1	InterPro IPR001296; KEGG: phe:Phep_0405 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: A-glycosyltransferase-related protein, glycosyltransferase 4 protein; PFAM: Glycosyl transferases group 1
YP_004346273.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: phe:Phep_3562 permease YjgP/YjgQ family protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease YjgP/YjgQ family protein; manually curated; PFAM: Predicted permease YjgP/YjgQ family
YP_004346274.1	InterPro IPR011628; KEGG: cat:CA2559_03270 hypothetical protein; PFAM: Cleaved adhesin; SPTR: Hemagglutinin protein HagA; PFAM: Cleaved Adhesin Domain
YP_004346275.1	KEGG: gfo:GFO_1892 hypothetical protein; SPTR:  uncharacterized protein
YP_004346276.1	InterPro IPR013431; KEGG: sli:Slin_3915 hypothetical protein; SPTR: VCBS; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004346277.1	KEGG: cpi:Cpin_4596 hypothetical protein; SPTR:  uncharacterized protein
YP_004346278.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: fbc:FB2170_01871 OmpA/MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Peptidoglycan-associated lipoprotein; PFAM: OmpA family
YP_004346279.1	KEGG: gfo:GFO_0129 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004346280.1	COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: dfe:Dfer_0288 peptidase M56 BlaR1; PFAM: Peptidase M56, BlaR1; SPTR: Peptidase M56 BlaR1; PFAM: BlaR1 peptidase M56
YP_004346281.1	COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: dfe:Dfer_0287 transcriptional repressor, CopY family; PFAM: Penicillinase repressor; SPTR: Transcriptional repressor, CopY family; PFAM: Penicillinase repressor
YP_004346283.1	KEGG: lsp:Bsph_3379 HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor); SPTR: Phosphoribosylaminoimidazole carboxylase atpase subunit (Air carboxylase) (Airc)
YP_004346284.1	KEGG: sli:Slin_4013 hypothetical protein; SPTR:  uncharacterized protein
YP_004346285.1	KEGG: tde:TDE2128 hypothetical protein; SPTR: Membrane protein
YP_004346286.1	KEGG: pvx:PVX_092950 hypothetical protein; SPTR:  uncharacterized protein
YP_004346287.1	KEGG: bth:BT_1755 hypothetical protein; SPTR: Phosphatidylinositol-4-phosphate 5-kinase
YP_004346288.1	KEGG: coc:Coch_0189 TonB family protein; SPTR: TonB family protein
YP_004346289.1	KEGG: gfo:GFO_3261 hypothetical protein; SPTR:  uncharacterized protein
YP_004346290.1	KEGG: cef:CE1790 hypothetical protein; SPTR: Integral membrane protein; PFAM: Protein of unknown function (DUF2029)
YP_004346291.1	KEGG: rcu:RCOM_1593310 hypothetical protein; SPTR: Glycopeptide antibiotics resistance protein
YP_004346292.1	KEGG: gfo:GFO_3423 membrane protein; SPTR: Membrane protein, ; PFAM: Alkaline phytoceramidase (aPHC)
YP_004346293.1	KEGG: sli:Slin_0673 PKD domain containing protein; SPTR:  uncharacterized protein
YP_004346294.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: aoe:Clos_1703 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346295.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: sli:Slin_0663 protein of unknown function UPF0118; PFAM: Uncharacterised protein family UPF0118; SPTR:  uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004346296.1	COGs: COG2102 ATPase of PP-loop superfamily; InterPro IPR002761; KEGG: fjo:Fjoh_2929  ATP binding protein; PFAM: Protein of unknown function DUF71, ATP-binding domain; SPTR:  ATP binding protein; TIGRFAM: Protein of unknown function DUF71, ATP-binding domain; PFAM: ATP-binding region; TIGRFAM: MJ0570-related uncharacterized domain
YP_004346297.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544; KEGG: phe:Phep_1220 aminotransferase class IV; PFAM: Aminotransferase, class IV; SPTR: Aminotransferase class IV; PFAM: Aminotransferase class IV
YP_004346298.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: sli:Slin_5745 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004346299.1	COGs: COG2989 conserved hypothetical protein; InterPro IPR002477:IPR005490; KEGG: neu:NE2573  periplasmic protein; PFAM: YkuD domain; Peptidoglycan binding-like; SPTR:  uncharacterized protein; PFAM:  peptidoglycan binding domain; L,D-transpeptidase catalytic domain
YP_004346300.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: coc:Coch_0333 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase; TIGRFAM: ribulose-phosphate 3-epimerase
YP_004346301.1	KEGG: tet:TTHERM_00312320 hypothetical protein; SPTR:  uncharacterized protein
YP_004346302.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_0217 outer membrane protein, porin F precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Outer membrane protein A; PFAM: OmpA family
YP_004346303.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: fba:FIC_01574 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase
YP_004346304.1	COGs: COG0176 Transaldolase; HAMAP: transaldolase; InterPro IPR001585:IPR004731; KEGG: gfo:GFO_2258  translaldolase; PFAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: Transaldolase C; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family
YP_004346305.1	KEGG: sli:Slin_5919  orphan protein; SPTR:  uncharacterized protein
YP_004346306.1	COGs: COG0308 Aminopeptidase N; KEGG: cps:CPS_0411  aminopeptidase; SPTR:  aminopeptidase
YP_004346307.1	KEGG: nhl:Nhal_0394 protein of unknown function DUF343; SPTR:  uncharacterized protein; PFAM: Methyltransferase domain
YP_004346308.1	KEGG: cpv:cgd8_3500 hypothetical protein; SPTR:  uncharacterized protein
YP_004346309.1	KEGG: bbt:BBta_6911 methyl-accepting chemotaxis sensory transducer; SPTR:  uncharacterized protein
YP_004346310.1	COGs: COG1408 phosphohydrolase; InterPro IPR004843; KEGG: fbc:FB2170_03135 hypothetical protein; PFAM: Metallophosphoesterase; SPTR:  uncharacterized protein; PFAM: Calcineurin-like phosphoesterase
YP_004346311.1	InterPro IPR006016; KEGG: dfe:Dfer_1652 UspA domain protein; PFAM: UspA; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004346312.1	KEGG: fjo:Fjoh_2286 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004346313.1	COGs: COG2996 conserved hypothetical protein; KEGG: chu:CHU_1813 hypothetical protein; SPTR:  uncharacterized protein
YP_004346314.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_5142 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004346315.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR010559:IPR003594; KEGG: sli:Slin_2907 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004346316.1	KEGG: bfo:BRAFLDRAFT_67580 hypothetical protein; SPTR:  uncharacterized protein
YP_004346317.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); HAMAP: CTP synthase; InterPro IPR017456:IPR000991:IPR004468; KEGG: fbc:FB2170_15841 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_004346318.1	COGs: COG0706 Preprotein translocase subunit YidC; HAMAP: Membrane protein oxaA; InterPro IPR001708:IPR019998:IPR020001; KEGG: cat:CA2559_08476  inner membrane protein translocase component YidC; PFAM: Membrane insertion protein, OxaA/YidC; SPTR:  uncharacterized protein; TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_004346319.1	KEGG: cpi:Cpin_2394 hypothetical protein; SPTR:  uncharacterized protein
YP_004346320.1	KEGG: fps:FP0078 hypothetical protein; SPTR:  uncharacterized protein
YP_004346321.1	COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: sru:SRU_0565 serine protease / subtilase peptidase; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Subtilisin Novo (E.C.); PFAM: Subtilase
YP_004346322.1	InterPro IPR000209; KEGG: cts:Ctha_0236 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase
YP_004346323.1	KEGG: pdi:BDI_1862 hypothetical protein; SPTR:  uncharacterized protein
YP_004346324.1	COGs: COG1164 Oligoendopeptidase F; InterPro IPR001567:IPR011976; KEGG: cpi:Cpin_0534 oligoendopeptidase, M3 family; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligoendopeptidase, M3 family; TIGRFAM: Peptidase M3B, oligoendopeptidase-related clade 2; PFAM: Peptidase M3; TIGRFAM: oligoendopeptidase, M3 family
YP_004346325.1	KEGG: fbc:FB2170_10364 hypothetical protein; SPTR:  uncharacterized protein
YP_004346326.1	COGs: COG2020  protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: lbl:LBL_1691 methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: Methyltransferase; PFAM: Protein of unknown function (DUF1295)
YP_004346327.1	COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: fjo:Fjoh_2486 pentapeptide repeat-containing protein; PFAM: Pentapeptide repeat; SPTR:  uncharacterized protein; PFAM: Pentapeptide repeats (8 copies)
YP_004346328.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: sli:Slin_2079 nitroreductase; PFAM: Nitroreductase-like; SPTR: Nitroreductase; PFAM: Nitroreductase
YP_004346329.1	KEGG: smt:Smal_2072 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Retroviral aspartyl protease
YP_004346330.1	COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR005746; KEGG: cpi:Cpin_7155 thioredoxin; PFAM: Thioredoxin domain; SPTR: Thioredoxin C-2; TIGRFAM: Thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004346331.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sli:Slin_2684 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004346332.1	KEGG: bfs:BF2692 hypothetical protein; SPTR:  uncharacterized protein
YP_004346333.1	KEGG: tbd:Tbd_2628 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004346334.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR001808; KEGG: fbc:FB2170_15003 transcriptional regulator, Crp family protein; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SPTR: Transcriptional regulator, Crp family protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004346335.1	COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR006076; KEGG: bha:BH1848 hypothetical protein; PFAM: FAD dependent oxidoreductase; SPTR: BH1848 protein; PFAM: Flavin containing amine oxidoreductase
YP_004346336.1	KEGG: dre:100332598 uromodulin-like; SPTR:  DNA polymerase
YP_004346337.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: phe:Phep_0496 glycosyl transferase group 1; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004346338.1	COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: fjo:Fjoh_4819 glycoside hydrolase 3 protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; PRIAM: Beta-N-acetylhexosaminidase; SPTR:  hydrolase/beta lactamase fusion protein; PFAM: Glycosyl hydrolase 3 N terminal domain; Beta-lactamase
YP_004346339.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); HAMAP: DNA mismatch repair protein, MutL; InterProIPR003594:IPR013507:IPR014790:IPR020667:IPR 014763; KEGG: gfo:GFO_0797 DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; MutL, C-terminal, dimerisation; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein, N-terminal; PFAM: MutL C terminal dimerisation domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_004346340.1	InterPro IPR002610; KEGG: bth:BT_2831 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR:  uncharacterized protein; PFAM: Rhomboid family
YP_004346341.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: bfs:BF4222  transmembrane rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR:  uncharacterized protein; PFAM: Rhomboid family
YP_004346342.1	COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: cpi:Cpin_0858 endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase
YP_004346343.1	KEGG: cat:CA2559_02565 hypothetical protein; SPTR:  uncharacterized protein
YP_004346344.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR004455:IPR000304; KEGG: cpi:Cpin_0657 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR:  pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_004346345.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: fps:FP0661 ATP-dependent RNA helicase DbpA; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent RNA helicase DbpA; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_004346346.1	COGs: COG0824 thioesterase; KEGG: fjo:Fjoh_2629 thioesterase-like protein; SPTR: Thioesterase-like protein; PFAM: Acyl-ACP thioesterase
YP_004346347.1	COGs: COG2192 carbamoyl transferase NodU family; InterPro IPR003696; KEGG: dfe:Dfer_2812 carbamoyltransferase; PFAM: Carbamoyltransferase; SPTR: Carbamoyltransferase; PFAM: Carbamoyltransferase
YP_004346348.1	KEGG: sli:Slin_4255 hypothetical protein; SPTR:  uncharacterized protein
YP_004346349.1	KEGG: dfe:Dfer_2810 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004346350.1	KEGG: sli:Slin_4251 membrane protein; SPTR: Membrane protein
YP_004346351.1	KEGG: drm:Dred_1382 hypothetical protein; SPTR:  uncharacterized protein
YP_004346352.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154:IPR013149; KEGG: scl:sce9319 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; SPTR: Alcohol dehydrogenase, zinc-containing; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_004346353.1	KEGG: mmw:Mmwyl1_3724 antibiotic biosynthesis monooxygenase domain-containing protein; SPTR: Antibiotic biosynthesis monooxygenase domain protein; PFAM: Antibiotic biosynthesis monooxygenase
YP_004346354.1	COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro IPR002496:IPR021130:IPR008179; KEGG: fbc:FB2170_10966 histidine biosynthesis bifunctional protein; PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: Histidine biosynthesis bifunctional protein; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_004346355.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; HAMAP: Histidine biosynthesis, HisF; InterPro IPR006062:IPR004651; KEGG: cpi:Cpin_1831 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: Histidine biosynthesis, HisF; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_004346356.1	COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; InterPro IPR006062; KEGG: zpr:ZPR_2392 phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide(ProFAR) isomerase; PFAM: Histidine biosynthesis; PRIAM:1-(5-phosphoribosyl)-5-((5-phosphoribosylamin o)methylideneamino)imidazole-4-carboxamideisomerase; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_004346357.1	COGs: COG0118 Glutamine amidotransferase; HAMAP: Imidazole glycerol phosphate synthase, subunit H; InterPro IPR000991:IPR010139; KEGG: cat:CA2559_08991 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: Imidazole glycerol phosphate synthase subunit hisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_004346358.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807:IPR005954:IPR006543:IPR006549; KEGG: fjo:Fjoh_2875 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: Imidazoleglycerol-phosphate dehydratase; PRIAM: Histidinol-phosphatase; SPTR: Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; TIGRFAM: Histidinol-phosphatase; Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain; histidinol-phosphatase
YP_004346359.1	COGs: COG0141 Histidinol dehydrogenase; HAMAP: Histidinol-phosphate aminotransferase; Histidinol dehydrogenase, prokaryotic-type; InterPro IPR012131:IPR004839:IPR005861; KEGG: plu:plu1569 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; Aminotransferase, class I/II; PRIAM: Histidinol dehydrogenase., Histidinol-phosphate transaminase; SPTR:  histidine biosynthesis bifunctional protein hisCD; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; Histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; histidinol-phosphate aminotransferase
YP_004346360.1	COGs: COG0040 ATP phosphoribosyltransferase; HAMAP: Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup; InterPro IPR013820:IPR013115:IPR020621; KEGG: fbc:FB2170_10916 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; Histidine biosynthesis HisG, C-terminal; PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase
YP_004346361.1	KEGG: mxa:MXAN_6180 hypothetical protein; SPTR:  uncharacterized protein
YP_004346362.1	COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: sli:Slin_5386 porphobilinogen synthase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_004346363.1	KEGG: bpo:BP951000_0840 hypothetical protein; SPTR:  uncharacterized protein
YP_004346364.1	KEGG: sin:YN1551_2135 hypothetical protein; SPTR:  uncharacterized protein
YP_004346365.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439:IPR013525; KEGG: pdi:BDI_1446 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter-like; ABC-2 type transporter; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein, ; PFAM: ABC transporter; ABC-2 type transporter
YP_004346366.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002198:IPR011284; KEGG: coc:Coch_1503 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_004346367.1	KEGG: cpi:Cpin_6600 hypothetical protein; SPTR:  uncharacterized protein
YP_004346368.1	HAMAP: Ribosomal protein S20; InterPro IPR002583; KEGG: coc:Coch_1511 30S ribosomal protein S20; PFAM: Ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_004346369.1	KEGG: phe:Phep_2909 hypothetical protein; SPTR:  uncharacterized protein
YP_004346370.1	COGs: COG0442 Prolyl-tRNA synthetase; HAMAP: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; InterPro IPR002314:IPR004154:IPR016061:IPR004499; KEGG: dfe:Dfer_0217 prolyl-tRNA synthetase; PFAM: Prolyl-tRNA synthetase, class II, C-terminal; Anticodon-binding; Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; PRIAM: Proline--tRNA ligase; SPTR: Prolyl-tRNA synthetase; TIGRFAM: Prolyl-tRNA synthetase, class IIa, prokaryotic-type; PFAM: Anticodon binding domain; Prolyl-tRNA synthetase, C-terminal; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family I
YP_004346371.1	KEGG: cpi:Cpin_5953 hypothetical protein; SPTR: Prolyl-tRNA synthetase
YP_004346372.1	KEGG: cpi:Cpin_5954 aromatic hydrocarbon degradation membrane protein; SPTR: Membrane protein involved in aromatic hydrocarbon degradation
YP_004346373.1	KEGG: fjo:Fjoh_2866 hypothetical protein; SPTR:  uncharacterized protein
YP_004346374.1	COGs: COG1705 Muramidase (flagellum-specific); InterPro IPR013338:IPR002901:IPR018392; KEGG: bth:BT_1538 hemagglutinin; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Peptidoglycan-binding lysin domain; SMART: Lysozyme domain, subfamily 2; SPTR:  uncharacterized protein; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM domain
YP_004346375.1	InterPro IPR008670; KEGG: fps:FP0641 hypothetical protein; PFAM: Acyl-CoA reductase; SPTR:  uncharacterized protein; PFAM: Acyl-CoA reductase (LuxC)
YP_004346376.1	KEGG: coc:Coch_0136 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain
YP_004346377.1	KEGG: phe:Phep_2902 hypothetical protein; SPTR:  uncharacterized protein
YP_004346378.1	KEGG: phe:Phep_1398 PUR-alpha/beta/gamma DNA/RNA-binding; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3276)
YP_004346379.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: phe:Phep_3532 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004346380.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: phe:Phep_3531 ParB-like partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: Stage 0 DNA-binding protein; TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_004346381.1	KEGG: cpi:Cpin_2029 hypothetical protein; SPTR:  uncharacterized protein
YP_004346382.1	COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846:IPR011770; KEGG: fjo:Fjoh_0205 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_004346383.1	InterPro IPR019759:IPR000223; KEGG: bth:BT_3319 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; SPTR:  uncharacterized protein; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_004346384.1	InterPro IPR014985; KEGG: pdi:BDI_2850 hypothetical protein; PFAM: WbqC-like protein family; SPTR:  uncharacterized protein; PFAM: WbqC-like protein family
YP_004346385.1	KEGG: tte:TTE0874 DNA polymerase I; SPTR:  uncharacterized protein
YP_004346386.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR001544:IPR005786; KEGG: dfe:Dfer_3303 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase II; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_004346387.1	KEGG: chu:CHU_2492 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3298)
YP_004346388.1	COGs: COG0514 Superfamily II DNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR018329; KEGG: chu:CHU_2232 ATP-dependent DNA helicase RecQ; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecQ; TIGRFAM: DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family
YP_004346389.1	InterPro IPR001387; KEGG: dfe:Dfer_2028 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, Cro/CI family; PFAM: Helix-turn-helix
YP_004346390.1	COGs: COG1295 membrane protein; InterPro IPR004664; KEGG: ana:alr3393 hypothetical protein; PFAM: Ribonuclease BN-related; SPTR: Ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_004346391.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_2648 ABC transporter related; PFAM: ABC transporter-like; PRIAM: Fe(3+)-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004346392.1	KEGG: cbf:CLI_3152 sugar transferase; SPTR: Geranyl geranyl reductase
YP_004346393.1	COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR004398; KEGG: pmz:HMPREF0659_A6956 Met-10+ like-protein; PFAM: Conserved hypothetical protein CHP00095; SPTR:  uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_004346394.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: bth:BT_0588 BexA, multidrug efflux pump; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Transmembrane MatE family multidrug efflux transporter; TIGRFAM: Multi antimicrobial extrusion protein MatE; PFAM: MatE; TIGRFAM:  efflux protein, MATE family
YP_004346395.1	COGs: COG0223 Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; InterPro IPR002376:IPR005793:IPR005794; KEGG: coc:Coch_1490 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; PRIAM: Methionyl-tRNA formyltransferase; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: Methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_004346396.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: zpr:ZPR_2524 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; SPTR: Histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein
YP_004346397.1	KEGG: fps:FP0087 glycosyl hydrolase; SPTR: Outer membrane autotransporter barrel
YP_004346398.1	KEGG: cat:CA2559_12748 hypothetical protein; SPTR: Subtilisin-like serine protease
YP_004346399.1	COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: ter:Tery_2249 tRNA/rRNA methyltransferase (SpoU); PFAM: tRNA/rRNA methyltransferase, SpoU; SPTR: SpoU protein; PFAM: SpoU rRNA Methylase
YP_004346400.1	KEGG: scl:sce5907 hypothetical protein; SPTR: Histone H1-I-1
YP_004346401.1	COGs: COG1932 Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; InterPro IPR000192; KEGG: fba:FIC_01054 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Phosphoserine transaminase; SPTR: Phosphoserine aminotransferase; PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase
YP_004346402.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006139:IPR006140; KEGG: cat:CA2559_08686 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; PRIAM: Phosphoglycerate dehydrogenase; SPTR: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004346403.1	COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: zpr:ZPR_3231 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1015)
YP_004346404.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR001608:IPR011078; KEGG: fps:FP1913 hypothetical protein; PFAM: Alanine racemase, N-terminal; SPTR:  uncharacterized protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_004346405.1	COGs: COG3358 conserved hypothetical protein; InterPro IPR012467; KEGG: fps:FP1747 hypothetical protein; PFAM: Protein of unknown function DUF1684; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF1684)
YP_004346406.1	KEGG: sro:Sros_6636 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Chlorophyllase
YP_004346407.1	InterPro IPR001087; KEGG: esi:Exig_2483 GDSL family lipase; PFAM: Lipase, GDSL; SPTR: Lipolytic protein G-D-S-L family; manually curated; PFAM: GDSL-like Lipase/Acylhydrolase
YP_004346408.1	KEGG: fbc:FB2170_13983  membrane attached peptidase; PRIAM: Dipeptidyl-peptidase III; SPTR:  dipeptidyl-peptidase III; PFAM: Peptidase M49
YP_004346409.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: cpi:Cpin_2638 acetyltransferase, SPTR: Acetyltransferase
YP_004346410.1	KEGG: gob:Gobs_3632 ethanolamine transproter; SPTR: Ethanolamine transproter
YP_004346411.1	KEGG: fjo:Fjoh_2154 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004346412.1	KEGG: kfl:Kfla_4069 hypothetical protein; SPTR:  uncharacterized protein
YP_004346413.1	KEGG: tpr:Tpau_3150 hypothetical protein; SPTR:  uncharacterized protein
YP_004346414.1	KEGG: cts:Ctha_2101 hypothetical protein; SPTR: NADH dehydrogenase
YP_004346415.1	COGs: COG3124 conserved hypothetical protein; InterPro IPR007431; KEGG: zpr:ZPR_1734 hypothetical protein; PFAM: Acyl carrier protein phosphodiesterase; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF479
YP_004346416.1	COGs: COG4623 soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; InterPro IPR001638:IPR008258; KEGG: cts:Ctha_0374 lytic transglycosylase catalytic; PFAM: Extracellular solute-binding protein, family 3; Lytic transglycosylase-like, catalytic; SMART: Extracellular solute-binding protein, family 3; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3
YP_004346417.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR002627:IPR018022; KEGG: phe:Phep_0852 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_004346418.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439; KEGG: bvu:BVU_3609 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004346419.1	InterPro IPR003838; KEGG: bth:BT_4325 hypothetical protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: ATP/GTP-binding transmembrane protein; PFAM: Predicted permease
YP_004346420.1	InterPro IPR000866; KEGG: chu:CHU_0134 thiol-disulfide isomerase; PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Possible thiol-disulfide isomerase; PFAM: AhpC/TSA family
YP_004346421.1	KEGG: dfe:Dfer_4535 hypothetical protein; SPTR:  uncharacterized protein
YP_004346422.1	COGs: COG2270 Permease of the major facilitator superfamily; InterPro IPR011701; KEGG: cat:CA2559_12428 hypothetical protein; PFAM: Major facilitator superfamily MFS-1; SPTR:  uncharacterized protein; PFAM: Vacuole effluxer Atg22 like
YP_004346423.1	COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886; KEGG: fps:FP0481  monofunctional lysine-ketoglutarate reductase; PFAM: Alanine dehydrogenase/PNT, N-terminal; PRIAM: Saccharopine dehydrogenase (NADP(+), L-lysine-forming); SPTR:  monofunctional lysine-ketoglutarate reductase; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain
YP_004346424.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR013200:IPR010023; KEGG: mac:MA3766 acylneuraminate cytidylyltransferase; PFAM: HAD superfamily hydrolase-like, type 3; SPTR: Acylneuraminate cytidylyltransferase; TIGRFAM: Phosphatase KdsC; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_004346425.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218:IPR006268; KEGG: tte:TTE1013 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004346426.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000644:IPR000056; KEGG: cla:Cla_1028 ribulose-phosphate 3-epimerase; PFAM: Cystathionine beta-synthase, core; Ribulose-phosphate 3-epimerase; SMART: Cystathionine beta-synthase, core; SPTR: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase; CBS domain
YP_004346427.1	COGs: COG3011 conserved hypothetical protein; InterPro IPR007263; KEGG: fba:FIC_00661 hypothetical protein; PFAM:  thiol-disulphide oxidoreductase DCC; SPTR:  uncharacterized protein; PFAM: Protein of unknown function, DUF393
YP_004346428.1	COGs: COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; KEGG: saf:SULAZ_0392 isoprenoid biosynthesis protein with amidotransferase-like domain; SPTR: Sigma cross-reacting protein 27A (SCRP-27A); PFAM: DJ-1/PfpI family
YP_004346429.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432; KEGG: fjo:Fjoh_2709 DNA mismatch repair protein MutS domain-containing protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; SPTR: DNA mismatch repair protein MutS domain protein; PFAM: MutS domain V
YP_004346430.1	COGs: COG3509 Poly(3-hydroxybutyrate) depolymerase; InterPro IPR010126; KEGG: tfu:Tfu_0082 esterase, PHB depolymerase; SPTR: Esterase, PHB depolymerase; TIGRFAM: Esterase, PHB depolymerase; PFAM: Esterase PHB depolymerase; TIGRFAM: esterase, PHB depolymerase
YP_004346431.1	COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); HAMAP: Phosphoenolpyruvate carboxykinase, ATP-utilising; InterPro IPR001272; KEGG: cpi:Cpin_6930 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PRIAM: Phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: Phosphoenolpyruvate carboxykinase, ATP-utilising; PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_004346432.1	KEGG: fjo:Fjoh_3485 beta-lactamase; PRIAM: Beta-lactamase; SPTR: Beta-lactamase; PFAM: Metallo-beta-lactamase superfamily
YP_004346433.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_3733 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004346434.1	COGs: COG2128 conserved hypothetical protein; InterPro IPR003779:IPR004675; KEGG: fjo:Fjoh_3734 alkylhydroperoxidase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_004346435.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: fbc:FB2170_12661 RNA polymerase sigma-70 factor, ECF subfamily protein; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor/ECF subfamily (Sigma-70); TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346437.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR003439:IPR004602; KEGG: chu:CHU_3698 excinuclease ABC subunit A; PFAM: ABC transporter-like; SPTR: Excinuclease ABC subunit A; TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004346438.1	COGs: COG1301 Na+/H+-dicarboxylate symporter; InterPro IPR001991; KEGG: fba:FIC_02257 proton/glutamate or proton/aspartate symport protein; PFAM: Sodium:dicarboxylate symporter; SPTR: Proton/glutamate or proton/aspartate symport protein; PFAM: Sodium:dicarboxylate symporter family
YP_004346439.1	COGs: COG1158 Transcription termination factor; InterProIPR011129:IPR003593:IPR011112:IPR011113:IPR 000194:IPR004665; KEGG: bth:BT_1595 transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; SMART: Cold shock protein; ATPase, AAA+ type, core; SPTR: Transcription termination factor Rho; TIGRFAM: Transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; Rho termination factor, RNA-binding domain; TIGRFAM: transcription termination factor Rho
YP_004346440.1	KEGG: bbe:BBR47_07480 hypothetical protein; SPTR: Conserved hypothetical membrane protein
YP_004346441.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713:IPR013221; KEGG: fjo:Fjoh_0414 cytoplasmic peptidoglycan synthetase domain-containing protein; PFAM: Mur ligase, N-terminal; Mur ligase, central; PRIAM: UDP-N-acetylmuramate--L-alanine ligase; SPTR: Cytoplasmic peptidoglycan synthetase domain protein; PFAM: Mur ligase, catalytic domain; Mur ligase, glutamate ligase domain; Mur ligase middle domain
YP_004346442.1	InterPro IPR019734:IPR001440; KEGG: aga:AgaP_AGAP002737 AGAP002737-PA; PFAM: Tetratricopeptide TPR-1; SPTR: AGAP002737-PA
YP_004346443.1	COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: fbc:FB2170_06285 oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004346444.1	KEGG: fps:FP0961 hypothetical protein; SPTR:  uncharacterized protein
YP_004346445.1	InterPro IPR003369; KEGG: fjo:Fjoh_1774 sec-independent translocation protein MttA/Hcf106; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; SPTR: Sec-independent translocation protein mttA/Hcf106; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_004346446.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); HAMAP: Translation elongation factor P; InterPro IPR013185:IPR001059:IPR015365:IPR011768; KEGG: coc:Coch_1758 elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; SPTR: Translation elongation factor P; TIGRFAM: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_004346447.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: gme:Gmet_3398 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold
YP_004346448.1	COGs: COG0421 Spermidine synthase; HAMAP: Spermidine synthase; InterPro IPR003826:IPR001045:IPR017716; KEGG: bba:Bd3616 spermidine synthase; PFAM: Spermine synthase; S-adenosylmethionine decarboxylase, bacterial/archaeal; PRIAM: Adenosylmethionine decarboxylase., Spermidine synthase; SPTR: Spermidine synthase; TIGRFAM: Spermine synthase; S-adenosylmethionine decarboxylase proenzyme; PFAM: Spermine/spermidine synthase; S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Bacillus form; spermidine synthase
YP_004346449.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase; InterPro IPR006035; KEGG: cpi:Cpin_3076 arginase/agmatinase/formiminoglutamase; PFAM: Ureohydrolase; PRIAM: Agmatinase; SPTR: Arginase/agmatinase/formiminoglutamase; PFAM: Arginase
YP_004346450.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR011123:IPR010822; KEGG: fjo:Fjoh_4178  periplasmic ligand-binding sensor protein; PFAM: Two component regulator three Y; Sporulation stage II, protein E C-terminal; SPTR: Serine/threonine protein kinases; PFAM: Y_Y_Y domain; Stage II sporulation protein E (SpoIIE)
YP_004346451.1	KEGG: asa:ASA_1188 transglutaminase; SPTR: Transglutaminase
YP_004346452.1	KEGG: gfo:GFO_0933 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2971)
YP_004346453.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: bpf:BpOF4_06080 cell wall-associated hydrolase containing three SLH domains; PFAM: NLP/P60; SPTR: Cell wall-associated hydrolase containing three SLH domains; PFAM: NlpC/P60 family
YP_004346454.1	COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: pdi:BDI_3349 carboxy-terminal processing protease precursor; PFAM: Peptidase S41; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR:  uncharacterized protein; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004346455.1	InterPro IPR011467; KEGG: fbc:FB2170_01025 hypothetical protein; PFAM: Protein of unknown function DUF1573; SPTR: Lipoprotein, ; PFAM: Protein of unknown function (DUF1573)
YP_004346456.1	KEGG: dfe:Dfer_5795 hypothetical protein; SPTR:  uncharacterized protein
YP_004346457.1	COGs: COG0009  translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: phe:Phep_3021 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; manually curated; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004346458.1	COGs: COG0518 GMP synthase - Glutamine amidotransferase domain; InterPro IPR000991; KEGG: mif:Metin_1160 GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I, C-terminal; SPTR: GMP synthase, small subunit; PFAM: Glutamine amidotransferase class-I
YP_004346459.1	COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis.; InterPro IPR011642; KEGG: bvu:BVU_1218 hypothetical protein; PFAM: Nucleoside recognition; SPTR: Spore maturation protein A/spore maturation protein B; PFAM: Nucleoside recognition
YP_004346460.1	KEGG: fba:FIC_00524 hypothetical protein; SPTR: Phosphoheptose isomerase
YP_004346461.1	InterPro IPR000182; KEGG: sli:Slin_1326 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346462.1	InterPro IPR018660; KEGG: spl:Spea_3927 hypothetical protein; PFAM: Protein of unknown function DUF2091, periplasmic; SPTR:  uncharacterized protein; PFAM: Membrane-bound lysozyme-inhibitor of c-type lysozyme
YP_004346463.1	KEGG: mcp:MCAP_0138 hypothetical protein; SPTR: Membrane protein
YP_004346464.1	InterPro IPR002625; KEGG: zpr:ZPR_1861 hypothetical protein; PFAM: Smr protein/MutS2 C-terminal; SPTR:  uncharacterized protein; PFAM: Smr domain
YP_004346465.1	InterPro IPR008915; KEGG: gpb:HDN1F_07870 hypothetical protein; PFAM: Peptidase M50; SPTR: Peptidase M50; PFAM: Peptidase M50; Protein of unknown function (DUF3267)
YP_004346466.1	InterPro IPR001680:IPR019781; KEGG: phe:Phep_3199 WD-40 repeat protein; PFAM: WD40 repeat, subgroup; SMART: WD40 repeat; SPTR: WD-40 repeat protein; PFAM: WD domain, G-beta repeat
YP_004346467.1	COGs: COG1809 conserved hypothetical protein; InterPro IPR003830; KEGG: phe:Phep_4158 phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulpholactate synthase, ComA; PRIAM: Phosphosulfolactate synthase; SPTR: Phosphosulfolactate synthase; PFAM: (2R)-phospho-3-sulfolactate synthase (ComA)
YP_004346468.1	InterPro IPR019734:IPR001440; KEGG: phe:Phep_4159 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SPTR: TPR repeat containing protein; PFAM: Tetratricopeptide repeat
YP_004346469.1	SPTR: Molybdopterin biosynthesis MoeA protein
YP_004346470.1	InterPro IPR006626; KEGG: plm:Plim_2976 hypothetical protein; SPTR: EtpA
YP_004346471.1	KEGG: msv:Mesil_1802 hypothetical protein; SPTR:  uncharacterized protein
YP_004346472.1	InterPro IPR019734; KEGG: dac:Daci_4841 TPR repeat-containing protein; SPTR: Tetratricopeptide repeat family
YP_004346473.1	KEGG: ddi:DDB_G0290305 hypothetical protein; SPTR:  uncharacterized protein
YP_004346474.1	COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR019949:IPR016048; KEGG: fjo:Fjoh_1983 luciferase; PFAM: Luciferase-like, subgroup; SPTR: Flavine monooxygenase; TIGRFAM: Luciferase oxidoreductase, group 1; PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase oxidoreductase, group 1
YP_004346475.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: zpr:ZPR_1366 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004346476.1	COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR003661:IPR003594; KEGG: zpr:ZPR_1367 osmosensitive K+ channel signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SPTR: Osmosensitive K+ channel signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004346477.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: fjo:Fjoh_4701 hypothetical protein; SPTR:  uncharacterized protein
YP_004346478.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; KEGG: chu:CHU_2452 acetyltransferase; SPTR: Acetyltransferase
YP_004346479.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: cpi:Cpin_5537 lysophospholipase-like protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Lysophospholipase-like protein; PFAM:  lysophospholipase
YP_004346480.1	KEGG: chu:CHU_0788 hypothetical protein; SPTR:  uncharacterized protein; PFAM: KWG Leptospira
YP_004346481.1	KEGG: chu:CHU_0597 hypothetical protein; SPTR:  uncharacterized protein
YP_004346482.1	COGs: COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog); InterPro IPR004307; KEGG: fbc:FB2170_07644 TspO- and MBR-like protein; PFAM: TspO/MBR-related protein; SPTR: TspO and MBR like proteins; PFAM: TspO/MBR family
YP_004346483.1	InterPro IPR012910:IPR000531; KEGG: cpi:Cpin_6273 TonB-dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain
YP_004346484.1	InterPro IPR019734; KEGG: sus:Acid_5048 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein
YP_004346485.1	KEGG: mau:Micau_0956 hypothetical protein; SPTR:  uncharacterized protein
YP_004346486.1	KEGG: mau:Micau_0956 hypothetical protein; SPTR:  uncharacterized protein
YP_004346487.1	COGs: COG4430 conserved hypothetical protein; KEGG: chu:CHU_1729 hypothetical protein; SPTR:  uncharacterized protein
YP_004346488.1	COGs: COG4886 Leucine-rich repeat (LRR) protein; InterPro IPR003591:IPR001611; KEGG: lil:LA_3321 hypothetical protein; PFAM: Leucine-rich repeat; PRIAM: Adenylate cyclase; SPTR:  lipoprotein; PFAM: Leucine Rich Repeat
YP_004346489.1	COGs: COG4339 conserved hypothetical protein; KEGG: chu:CHU_2810 hypothetical protein; SPTR:  uncharacterized protein
YP_004346490.1	KEGG: clu:CLUG_02622 hypothetical protein; SPTR:  uncharacterized protein
YP_004346491.1	KEGG: mmy:MSC_0973 glycosyltransferase; SPTR:  uncharacterized protein
YP_004346492.1	InterPro IPR000182; KEGG: mei:Msip34_1970 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Hypothetical acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346493.1	KEGG: rer:RER_05740 hypothetical protein; SPTR:  uncharacterized protein
YP_004346494.1	KEGG: bmy:Bm1_24205 PHD-finger family protein; SPTR: Conserved domain protein
YP_004346495.1	KEGG: cbh:CLC_2738 hypothetical protein; SPTR:  uncharacterized protein
YP_004346496.1	KEGG: ngr:NAEGRDRAFT_88208 Rab-GAP; SPTR: Rab-GAP
YP_004346497.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004346498.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: fps:FP0497 ribosomal-protein-amino-adic N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Probable ribosomal-protein-amino-adic N-acetyltransferase
YP_004346499.1	KEGG: glo:Glov_0119 hypothetical protein; SPTR: CbbQ/NirQ/NorQ/GpvN family protein
YP_004346500.1	KEGG: plm:Plim_3173 beta-lactamase domain protein; SPTR: Metallo-beta-lactamase; PFAM: Metallo-beta-lactamase superfamily
YP_004346501.1	InterPro IPR000182; KEGG: zpr:ZPR_0259 predicted acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase (GNAT) family protein; PFAM: Acetyltransferase (GNAT) family
YP_004346502.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: fps:FP0921 lipoprotein releasing system ATP-binding protein LolD; PFAM: ABC transporter-like; PRIAM: Phosphonate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: Lipoprotein releasing system ATP-binding protein LolD; PFAM: ABC transporter
YP_004346503.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: fps:FP0922 lipoprotein releasing system transmembrane protein LolC; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Lipoprotein releasing system transmembrane protein LolC; PFAM: Predicted permease
YP_004346504.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR000089; KEGG: fps:FP0923 membrane fusion efflux protein precursor; PFAM: Biotin/lipoyl attachment; SPTR: Probable membrane fusion efflux protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346505.1	KEGG: apr:Apre_1179 hypothetical protein; SPTR:  uncharacterized protein
YP_004346506.1	InterPro IPR001647; KEGG: fps:FP0924 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Probable transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_004346507.1	KEGG: pbe:PB001171.00.0 ubiquitin carboxyl-terminal hydrolase; SPTR: Ubiquitin carboxyl-terminal hydrolase
YP_004346508.1	KEGG: fbc:FB2170_10439 hypothetical protein; SPTR:  uncharacterized protein
YP_004346509.1	KEGG: pph:Ppha_0958 hypothetical protein; SPTR:  uncharacterized protein
YP_004346510.1	KEGG: wri:WRi_012560 transposase; SPTR: Transposase; manually curated; PFAM: Transposase IS116/IS110/IS902 family; Transposase
YP_004346511.1	COGs: COG0666 FOG: Ankyrin repeat; InterPro IPR002110; KEGG: btl:BALH_3077 ankyrin repeat-containing protein; SPTR: Ankyrin repeat domain protein; PFAM: Ankyrin repeat
YP_004346512.1	KEGG: pbe:PB001171.00.0 ubiquitin carboxyl-terminal hydrolase; SPTR: Ubiquitin carboxyl-terminal hydrolase
YP_004346513.1	KEGG: fbc:FB2170_10439 hypothetical protein; SPTR:  uncharacterized protein
YP_004346514.1	KEGG: pbe:PB001171.00.0 ubiquitin carboxyl-terminal hydrolase; SPTR: Ubiquitin carboxyl-terminal hydrolase
YP_004346515.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004346516.1	KEGG: lci:LCK_01199 cell wall biosynthesis glycosyltransferase
YP_004346517.1	KEGG: lki:LKI_09490 hypothetical protein; SPTR:  prophage pi3 protein 59
YP_004346518.1	KEGG: ptm:GSPATT00005053001 hypothetical protein; SPTR:  uncharacterized protein
YP_004346519.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004346520.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: dfe:Dfer_2558 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004346521.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: dfe:Dfer_2559 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346522.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_2560 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004346523.1	KEGG: apr:Apre_1179 hypothetical protein; SPTR:  uncharacterized protein
YP_004346524.1	KEGG: fba:FIC_01675 hypothetical protein; SPTR:  uncharacterized protein
YP_004346525.1	KEGG: fba:FIC_01674 hypothetical protein; SPTR:  uncharacterized protein
YP_004346526.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: fps:FP0924 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Probable transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_004346527.1	KEGG: pic:PICST_28119 Suppressor of Sensor Kinase (SLN1); SPTR:  uncharacterized protein
YP_004346528.1	COGs: COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); InterPro IPR008331; KEGG: chu:CHU_2021 DNA-binding protein; DPS family protein; PFAM: Ferritin/Dps protein; SPTR: DNA-binding protein; DPS family protein; PFAM: Ferritin-like domain
YP_004346529.1	KEGG: gau:GAU_3518 hypothetical membrane protein; SPTR: Hypothetical membrane protein
YP_004346530.1	KEGG: cjr:CJE0546 pentapeptide repeat-containing protein; SPTR:  uncharacterized protein
YP_004346531.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; KEGG: pfs:PFLU3292 hypothetical protein; SPTR: Possible dihydrokaempferol 4-reductase; PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase
YP_004346532.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: zpr:ZPR_3711 predicted cAMP-binding domain, regulatory protein, diverged; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004346533.1	COGs: COG2958 conserved hypothetical protein; InterPro IPR007468; KEGG: fba:FIC_01229 hypothetical protein; PFAM: Protein of unknown function DUF511; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF511)
YP_004346534.1	COGs: COG2132  multicopper oxidase; InterPro IPR011707:IPR001117:IPR011706; KEGG: fjo:Fjoh_3078 multicopper oxidase, type 3; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; SPTR: P-ATPase superfamily P-type ATPase copper transporter; PFAM: Multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family
YP_004346535.1	KEGG: fjo:Fjoh_3064 hypothetical protein; SPTR: Mercuric transport periplasmic binding protein MerP; PFAM: Protein of unknown function (DUF3347)
YP_004346536.1	KEGG: cat:CA2559_00265 hypothetical protein; SPTR:  uncharacterized protein
YP_004346537.1	COGs: COG2217 Cation transport ATPase; InterProIPR006403:IPR006416:IPR001757:IPR006121:IPR 008250:IPR005834; KEGG: chu:CHU_1499 cation-transporting ATPase; copper-exporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; PRIAM: Copper-exporting ATPase; SPTR: Copper-exporting ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004346538.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cat:CA2559_00255  regulatory protein; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Regulator with DNA binding domain protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004346539.1	KEGG: apb:SAR116_0994 hypothetical protein; SPTR:  uncharacterized protein
YP_004346540.1	KEGG: pbe:PB001171.00.0 ubiquitin carboxyl-terminal hydrolase; SPTR: Ubiquitin carboxyl-terminal hydrolase
YP_004346541.1	KEGG: fbc:FB2170_10439 hypothetical protein; SPTR:  uncharacterized protein
YP_004346542.1	KEGG: pbe:PB001171.00.0 ubiquitin carboxyl-terminal hydrolase; SPTR: Ubiquitin carboxyl-terminal hydrolase
YP_004346543.1	KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related; SPTR: CHU large protein, possible SAP or adhesin AidA-related
YP_004346544.1	InterPro IPR000200; KEGG: glo:Glov_2340 peptidase C10 streptopain; PFAM: Peptidase C10, streptopain; SPTR: Peptidase C10 streptopain; PFAM: Peptidase C10 family
YP_004346545.1	KEGG: fba:FIC_01680 hypothetical protein; SPTR:  uncharacterized protein
YP_004346547.1	KEGG: ter:Tery_1975 filamentous haemagglutinin outer membrane protein; SPTR: Filamentous haemagglutinin family outer membrane protein
YP_004346548.1	InterPro IPR000601; KEGG: cyb:CYB_2367 PKD domain-containing protein; PFAM: PKD; SMART: PKD; SPTR: PKD domain protein; PFAM: PKD domain
YP_004346549.1	KEGG: chu:CHU_2806 hypothetical protein; SPTR:  uncharacterized protein
YP_004346550.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_4162 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004346551.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: cts:Ctha_1210 efflux transporter, RND family, MFP subunit; PFAM: Secretion protein HlyD; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346552.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: cpi:Cpin_0608 acriflavin resistance protein; PFAM: Acriflavin resistance protein; SPTR: Acriflavin resistance protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004346553.1	COGs: COG2819 hydrolase of the alpha/beta superfamily; InterPro IPR000801; KEGG: cat:CA2559_01445  esterase; PFAM:  esterase; SPTR:  esterase; PFAM:  esterase
YP_004346554.1	KEGG: pmf:P9303_21011 galanin; SPTR: Possible Galanin; PFAM: Protein of unknown function (DUF3137)
YP_004346555.1	KEGG: fps:FP0040 hypothetical protein; SPTR:  uncharacterized protein
YP_004346556.1	COGs: COG4870 Cysteine protease; InterPro IPR000668; KEGG: dfe:Dfer_1726 peptidase C1A papain; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; SPTR: Peptidase C1A papain; PFAM: Papain family cysteine protease
YP_004346557.1	KEGG: pam:PANA_2280 RfbC; SPTR: RfbC
YP_004346558.1	KEGG: tet:TTHERM_00790480 Helicase conserved C-terminal domain containing protein; SPTR: Helicase conserved C-terminal domain containing protein
YP_004346559.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR019734:IPR003661:IPR003594:IPR001789:IPR 018060:IPR001440:IPR000005; KEGG: rbi:RB2501_14219  two-component system sensor kinase/response regulator fusion protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Tetratricopeptide TPR-1; Signal transduction response regulator, receiver domain; Helix-turn-helix, AraC type; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Tetratricopeptide repeat; Helix-turn-helix, AraC domain; SPTR:  uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Tetratricopeptide repeat; Bacterial regulatory helix-turn-helix proteins, AraC family
YP_004346560.1	KEGG: phe:Phep_2124 hypothetical protein; SPTR:  uncharacterized protein
YP_004346561.1	COGs: COG4430 conserved hypothetical protein; InterPro IPR014922; KEGG: bbe:BBR47_47270 hypothetical protein; PFAM: Protein of unknown function DUF1801; SPTR: Protein of hypothetical function DUF1801; PFAM: Domain of unknown function (DU1801)
YP_004346562.1	KEGG: cpi:Cpin_4831 hypothetical protein; SPTR:  uncharacterized protein
YP_004346563.1	COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: fjo:Fjoh_2828 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004346564.1	InterPro IPR001845; KEGG: cpi:Cpin_4829 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004346565.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: fjo:Fjoh_4972 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein
YP_004346566.1	KEGG: ppd:Ppro_2108 hypothetical protein; SPTR:  uncharacterized protein
YP_004346567.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR000014:IPR013656:IPR011495:IPR003594; KEGG: cyn:Cyan7425_5451 signal transduction histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_004346568.1	InterPro IPR001387:IPR001646; KEGG: phe:Phep_2086 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; Pentapeptide repeat; SMART: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein; PFAM: Helix-turn-helix
YP_004346569.1	COGs: COG4898 conserved hypothetical protein; InterPro IPR014580; KEGG: chu:CHU_2319 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033199; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2200)
YP_004346570.1	KEGG: fjo:Fjoh_0625 hypothetical protein; SPTR: Hypothetical lipoprotein
YP_004346571.1	COGs: COG4430 conserved hypothetical protein; KEGG: chu:CHU_1729 hypothetical protein; SPTR:  uncharacterized protein
YP_004346572.1	COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: rba:RB4968 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Soluble epoxide hydrolase; SPTR: Epoxide hydrolase 2; PFAM: alpha/beta hydrolase fold
YP_004346573.1	COGs: COG2378 transcriptional regulator protein; InterPro IPR001034; KEGG: chu:CHU_1731 DeoR family transcriptional regulator; SMART: HTH transcriptional regulator, DeoR N-terminal; SPTR: Transcriptional regulator, DeoR family; PFAM: HTH domain
YP_004346574.1	KEGG: scb:SCAB_2491 hypothetical protein; SPTR:  uncharacterized protein
YP_004346575.1	KEGG: pfa:MAL8P1.11 conserved Plasmodium membrane protein, unknown function; SPTR:  uncharacterized protein
YP_004346576.1	KEGG: cco:CCC13826_2295 hypothetical protein; SPTR:  uncharacterized protein
YP_004346577.1	InterPro IPR013217; KEGG: fbc:FB2170_01567 hypothetical protein; PFAM: Methyltransferase type 12; SPTR:  uncharacterized protein; PFAM: Methyltransferase domain
YP_004346578.1	InterPro IPR002514; KEGG: dap:Dacet_1482 transposase IS3/IS911 family protein; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/IS911 family protein; PFAM: Transposase
YP_004346579.1	KEGG: taf:THA_38 ferrous iron transport protein B; SPTR: Ferrous iron transport protein B
YP_004346580.1	KEGG: wri:WRi_012560 transposase; SPTR: Transposase; manually curated; PFAM: Transposase IS116/IS110/IS902 family; Transposase
YP_004346581.1	KEGG: scl:sce7516 hypothetical protein; SPTR:  uncharacterized protein
YP_004346582.1	KEGG: wch:wcw_0943  rhs family protein; SPTR:  rhs family protein
YP_004346583.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004346584.1	KEGG: bfu:BC1G_13847 hypothetical protein; SPTR: Glycoside hydrolase 16 protein
YP_004346585.1	InterPro IPR006685; KEGG: coc:Coch_0787 hypothetical protein; PFAM: Mechanosensitive ion channel MscS; SPTR:  uncharacterized protein; PFAM: Mechanosensitive ion channel
YP_004346586.1	InterPro IPR003812; KEGG: cqu:CpipJ_CPIJ001789 hypothetical protein; PFAM: Filamentation induced by cAMP/death on curing, related; SPTR: Adenosine monophosphate-protein transferase FICD homolog; PFAM: Fic/DOC family
YP_004346588.1	KEGG: chu:CHU_2481 hypothetical protein; SPTR:  uncharacterized protein
YP_004346589.1	KEGG: dgr:Dgri_GH17293 GH17293 gene product from transcript GH17293-RA; SPTR:  uncharacterized protein
YP_004346590.1	KEGG: cch:Cag_0761 hypothetical protein; SPTR:  uncharacterized protein; PFAM: T5orf172 domain
YP_004346591.1	COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001; KEGG: dat:HRM2_20620 ATP-dependent DNA excision repair protein (helicase superfamily); SMART: DEAD-like helicase, N-terminal; SPTR: ATP-dependent DNA excision repair protein (Helicase superfamily); PFAM: Helicase conserved C-terminal domain
YP_004346592.1	COGs: COG3943 Virulence protein; KEGG: mbu:Mbur_1215 hypothetical protein; SPTR:  uncharacterized protein
YP_004346593.1	KEGG: cli:Clim_0127 hypothetical protein; SPTR: Predicted ATPase, possibly involved in inorganic ion transport
YP_004346594.1	COGs: COG1002 Type II restriction enzyme methylase subunits; KEGG: cch:Cag_0759 hypothetical protein; SPTR:  uncharacterized protein; PFAM: N-6 DNA Methylase
YP_004346595.1	InterPro IPR001387; KEGG: pgn:PGN_0927 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, ; PFAM: Helix-turn-helix
YP_004346596.1	KEGG: smm:Smp_123500 ATP-dependent RNA Helicase; SPTR: Penicillin-binding protein
YP_004346597.1	KEGG: pkn:PKH_010520 hypothetical protein; SPTR:  uncharacterized protein
YP_004346598.1	COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: cpi:Cpin_4935 5'-3' DNA helicase; SPTR: 5'-3' DNA helicase; PFAM: PIF1 helicase
YP_004346599.1	InterPro IPR013517; KEGG: lil:LA_0094 hypothetical protein; PFAM: FG-GAP; SPTR:  uncharacterized protein
YP_004346600.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: fps:FP2136 integrase/recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Integrase/recombinase; PFAM: Phage integrase; TIGRFAM: integron integrase
YP_004346601.1	COGs: COG2968 conserved hypothetical protein; InterPro IPR007497; KEGG: mba:Mbar_A1293 outer membrane protein; PFAM: Protein of unknown function DUF541; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF541)
YP_004346602.1	InterPro IPR005151; KEGG: fps:FP1003 hypothetical protein; PFAM: Peptidase S41; SPTR: Peptidase, S41 family; PFAM: Peptidase S41
YP_004346603.1	KEGG: fbc:FB2170_05515  RNA polymerase ECF-type sigma factor; SPTR:  RNA polymerase ECF-type sigma factor
YP_004346604.1	KEGG: cbt:CLH_0793 CalS11; SPTR: CalS11
YP_004346605.1	COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225:IPR006298:IPR000795:IPR004161:IPR 000640; KEGG: fjo:Fjoh_4935 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_004346606.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR001650:IPR011545:IPR005580; KEGG: phe:Phep_0666 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_004346607.1	KEGG: cpi:Cpin_4111 hypothetical protein; SPTR:  uncharacterized protein
YP_004346608.1	KEGG: chu:CHU_2139 CHU large protein, SAP or adhesin AidA-related; SPTR: CHU large protein, possible SAP or adhesin AidA-related
YP_004346609.1	KEGG: lba:Lebu_1891 hypothetical protein; SPTR:  uncharacterized protein
YP_004346610.1	COGs: COG2133 Glucose/sorbosone dehydrogenase; KEGG: phe:Phep_2919 quinoprotein glucose dehydrogenase; PRIAM: Quinoprotein glucose dehydrogenase; SPTR: Glucose/sorbosone dehydrogenase; PFAM: Glucose / Sorbosone dehydrogenase; TIGRFAM: dehydrogenase, PQQ-dependent, s-GDH family
YP_004346611.1	COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sli:Slin_3768 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain
YP_004346612.1	KEGG: sli:Slin_3767 siderophore-interacting protein-like protein; SPTR: Siderophore-interacting protein-like protein; PFAM: Siderophore-interacting FAD-binding domain
YP_004346613.1	KEGG: fjo:Fjoh_2153 hypothetical protein; SPTR:  uncharacterized protein
YP_004346614.1	InterPro IPR002921; KEGG: chu:CHU_0728 hypothetical protein; PFAM: Lipase, class 3; SPTR:  uncharacterized protein; PFAM: Lipase (class 3)
YP_004346615.1	InterPro IPR000182; KEGG: sil:SPO2188 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR:  uncharacterized protein; PFAM: Acetyltransferase (GNAT) family
YP_004346616.1	COGs: COG5562 Phage envelope protein; KEGG: chu:CHU_3798 hypothetical protein; SPTR: Possible bacteriophage envelope protein; PFAM: Protein of unknown function (DUF1398)
YP_004346617.1	KEGG: scl:sce5708 hypothetical protein; SPTR:  uncharacterized protein
YP_004346618.1	KEGG: bfo:BRAFLDRAFT_110967 hypothetical protein; SPTR:  uncharacterized protein
YP_004346619.1	InterPro IPR001611; KEGG: fjo:Fjoh_1189 regulator of chromosome condensation, RCC1; SPTR: Regulator of chromosome condensation, RCC1
YP_004346620.1	COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR016048; KEGG: sli:Slin_3890 luciferase-like protein; PFAM: Luciferase-like, subgroup; SPTR: Luciferase-like, subgroup; TIGRFAM:  oxidoreductase, LLM family; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable oxidoreductase, LLM family
YP_004346621.1	KEGG: fnu:FN2119 hypothetical protein; SPTR:  uncharacterized protein
YP_004346622.1	KEGG: ddi:DDB_G0290431 hypothetical protein; SPTR:  uncharacterized protein
YP_004346623.1	KEGG: lil:LA_1213 hypothetical protein; SPTR:  uncharacterized protein
YP_004346624.1	KEGG: hch:HCH_04703 hypothetical protein; SPTR:  uncharacterized protein
YP_004346625.1	KEGG: nam:NAMH_0442 hypothetical protein; SPTR:  uncharacterized protein
YP_004346626.1	KEGG: cpi:Cpin_5774 hypothetical protein; SPTR:  uncharacterized protein
YP_004346627.1	COGs: COG2909 ATP-dependent transcriptional regulator protein; InterPro IPR000792; KEGG: phe:Phep_2289 regulatory protein LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; SPTR: Regulatory protein LuxR; PFAM: Bacterial regulatory proteins, luxR family
YP_004346628.1	InterPro IPR013216; KEGG: plu:plu4833 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: Complete genome; segment 17/17; PFAM: Methyltransferase domain
YP_004346629.1	COGs: COG2076 Membrane transporter of cations and cationic drugs; InterPro IPR000390; KEGG: dfe:Dfer_5569 small multidrug resistance protein; PFAM: Small multidrug resistance protein; SPTR: Small multidrug resistance protein; PFAM: Small Multidrug Resistance protein
YP_004346630.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: fjo:Fjoh_3294 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SPTR:  uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_004346632.1	KEGG: gfo:GFO_3110 membrane protein; SPTR:  uncharacterized protein
YP_004346633.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR013027; KEGG: fjo:Fjoh_0929 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004346634.1	KEGG: pmz:HMPREF0659_A6007  lipoprotein; SPTR:  uncharacterized protein
YP_004346635.1	KEGG: phu:Phum_PHUM240010 serine incorporator, SPTR: NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
YP_004346636.1	KEGG: ang:An08g10770 hypothetical protein; SPTR:  uncharacterized protein
YP_004346637.1	KEGG: ccb:Clocel_3371 glutathionylspermidine synthase; SPTR:  uncharacterized protein
YP_004346638.1	KEGG: hmg:100215577 similar to mCG11385; SPTR: DNA gyrase/topoisomerase IV, A subunit
YP_004346639.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR006275:IPR005481:IPR005479:IPR005480; KEGG: fbc:FB2170_13823 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; PRIAM: Carbamoyl-phosphate synthase (ammonia); SPTR: Carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_004346640.1	KEGG: fjo:Fjoh_1375 hypothetical protein; SPTR:  uncharacterized protein
YP_004346641.1	KEGG: fba:FIC_00434 hypothetical protein; SPTR:  uncharacterized protein
YP_004346642.1	KEGG: fjo:Fjoh_0468 hypothetical protein; SPTR:  uncharacterized protein
YP_004346643.1	KEGG: tan:TA16940 hypothetical protein; SPTR:  uncharacterized protein
YP_004346644.1	KEGG: bbe:BBR47_08400 probable potassium uptake system membrane components; SPTR: Probable potassium uptake system membrane components
YP_004346645.1	KEGG: fjo:Fjoh_4024 hypothetical protein; SPTR:  uncharacterized protein
YP_004346646.1	KEGG: fps:FP1427  thiol:disulfide oxidoreductase TlpB; SPTR:  thiol:disulfide oxidoreductase TlpB
YP_004346647.1	COGs: COG4301 conserved hypothetical protein; InterPro IPR019257; KEGG: syp:SYNPCC7002_G0154 hypothetical protein; PFAM: Protein of unknown function DUF2260; SPTR:  uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase
YP_004346648.1	COGs: COG1262 conserved hypothetical protein; InterPro IPR017806:IPR005532; KEGG: dfe:Dfer_1251 protein of unknown function DUF323; PFAM: Sulphatase-modifying factor; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: conserved hypothetical protein TIGR03440
YP_004346649.1	COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: ava:Ava_2662 hypothetical protein; PFAM: Protein of unknown function DUF427; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF427)
YP_004346650.1	COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: ava:Ava_2662 hypothetical protein; PFAM: Protein of unknown function DUF427; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF427)
YP_004346651.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822; KEGG: lic:LIC12324 serine/threonine kinase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-related; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004346652.1	COGs: COG1741 Pirin-related protein; InterPro IPR003829:IPR008778; KEGG: fjo:Fjoh_3490 pirin domain-containing protein; PFAM: Pirin, N-terminal; Pirin, C-terminal; SPTR: Pirin domain protein; PFAM: Pirin C-terminal cupin domain; Pirin
YP_004346653.1	COGs: COG2388 acetyltransferase; InterPro IPR000182; KEGG: fjo:Fjoh_3492 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346654.1	COGs: COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; InterPro IPR013991:IPR013988; KEGG: sde:Sde_0107  PhnA protein; PFAM: PhnA protein, C-terminal; SMART: PhnA protein N-terminal, proteobacterial; SPTR: Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; PFAM: PhnA protein; TIGRFAM: alkylphosphonate utilization operon protein PhnA
YP_004346655.1	InterPro IPR003961; KEGG: dfe:Dfer_5604 hypothetical protein; PFAM: Fibronectin, type III; SMART: Fibronectin, type III; SPTR:  uncharacterized protein
YP_004346656.1	KEGG: dan:Dana_GF16527 GF16527 gene product from transcript GF16527-RA; SPTR:  uncharacterized protein
YP_004346657.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: phe:Phep_2501 thioesterase superfamily protein; PFAM: Thioesterase superfamily; SPTR: Long-chain acyl-CoA thioester hydrolase; PFAM: Thioesterase superfamily
YP_004346658.1	KEGG: cpi:Cpin_6482 hypothetical protein; SPTR:  uncharacterized protein; manually curated
YP_004346659.1	KEGG: dfe:Dfer_0994 hypothetical protein; SPTR:  uncharacterized protein
YP_004346660.1	COGs: COG3696  silver efflux pump; InterPro IPR004763:IPR001036; KEGG: fps:FP0880 multidrug resistance protein precursor AcrB/AcrD/AcrF family protein; PFAM: Acriflavin resistance protein; SPTR: Probable multidrug resistance protein. AcrB/AcrD/AcrF family protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: AcrB/AcrD/AcrF family; Outer membrane efflux protein; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_004346661.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: fjo:Fjoh_3932 RND family efflux transporter MFP subunit; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346662.1	KEGG: chl:Chy400_0321 polymorphic outer membrane protein; SPTR: Fibronectin type III domain protein
YP_004346663.1	COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: pjd:Pjdr2_4566 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004346664.1	InterPro IPR011637; KEGG: chu:CHU_1111 hypothetical protein; PFAM: DoxX; SPTR:  uncharacterized protein; PFAM: DoxX
YP_004346665.1	COGs: COG3832 conserved hypothetical protein; InterPro IPR013538; KEGG: chu:CHU_1110 hypothetical protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR:  uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004346666.1	COGs: COG2764 conserved hypothetical protein; InterPro IPR013538; KEGG: cpi:Cpin_4571 activator of HSP90 ATPase 1 family protein; PFAM: Activator of Hsp90 ATPase homologue 1-like; SPTR: Activator of Hsp90 ATPase 1 family protein; PFAM: 3-demethylubiquinone-9 3-methyltransferase; Activator of Hsp90 ATPase homolog 1-like protein
YP_004346667.1	InterPro IPR001845; KEGG: chu:CHU_1109 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004346668.1	KEGG: cat:CA2559_06900 hypothetical protein; SPTR:  uncharacterized protein
YP_004346669.1	KEGG: cat:CA2559_02125 hypothetical protein; SPTR:  uncharacterized protein
YP_004346670.1	COGs: COG1538 Outer membrane protein; InterPro IPR010131:IPR003423; KEGG: chu:CHU_0539 outer membrane lipoprotein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_004346671.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR004764:IPR001036; KEGG: chu:CHU_0538 AcrB/AcrD family multidrug resistance protein; PFAM: Acriflavin resistance protein; SPTR: AcrB/AcrD family multidrug resistance protein; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004346672.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: chu:CHU_0537 HlyD family multidrug resistance protein; PFAM: Secretion protein HlyD; SPTR: Multidrug resistance protein; HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004346673.1	KEGG: cbf:CLI_3048 M24/M37 family peptidase; SPTR: Polyprotein
YP_004346674.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: zpr:ZPR_4570 acetyltransferase, GNAT family; PFAM: GCN5-related N-acetyltransferase; SPTR: Acetyltransferase, gnat family; PFAM: Acetyltransferase (GNAT) family
YP_004346675.1	KEGG: srm:SRM_00153 ribonucleoside-diphosphate reductase beta subunit; SPTR: Ribonucleoside-diphosphate reductase beta subunit
YP_004346676.1	KEGG: fjo:Fjoh_4549 hypothetical protein; SPTR:  uncharacterized protein
YP_004346677.1	KEGG: dfe:Dfer_1348 hypothetical protein; SPTR:  uncharacterized protein
YP_004346678.1	KEGG: fps:FP1503 hypothetical protein; SPTR:  uncharacterized protein
YP_004346680.1	COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: chu:CHU_2865 hypothetical protein; PFAM: N-acetylglucosaminyl phosphatidylinositol deacetylase; SPTR:  uncharacterized protein; PFAM: GlcNAc-PI de-N-acetylase
YP_004346681.1	SPTR:  uncharacterized protein
YP_004346682.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: cpi:Cpin_5478 Na+/solute symporter; PFAM: Sodium/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_004346683.1	KEGG: fba:FIC_01161 hypothetical protein; SPTR:  uncharacterized protein
YP_004346684.1	InterPro IPR000620; KEGG: fjo:Fjoh_2366 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Drug/metabolite transporter (DMT) superfamily protein; PFAM: EamA-like transporter family
YP_004346685.1	KEGG: fjo:Fjoh_4856 hypothetical protein; SPTR:  uncharacterized protein
YP_004346686.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; InterPro IPR002649:IPR016009; KEGG: cpi:Cpin_1330 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_004346687.1	InterPro IPR010699; KEGG: cpi:Cpin_0107 protein of unknown function DUF1275; PFAM: Protein of unknown function DUF1275; SPTR: Hypothetical membrane protein; PFAM: Protein of unknown function (DUF1275)
YP_004346688.1	KEGG: pfh:PFHG_03948 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004346689.1	KEGG: phe:Phep_3671 hypothetical protein; SPTR:  uncharacterized protein
YP_004346690.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003660:IPR003661:IPR003594; KEGG: zpr:ZPR_0968 two-component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SPTR: Two-component system sensor histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004346691.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: zpr:ZPR_0969 two-component system response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; SPTR: Two-component system response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004346692.1	InterPro IPR001845; KEGG: cte:CT1728 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; SPTR: Regulatory protein, ArsR; PFAM: Bacterial regulatory protein, arsR family
YP_004346693.1	COGs: COG0009  translation factor (SUA5); InterPro IPR004388:IPR006070; KEGG: rbi:RB2501_11457 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004346694.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR003607:IPR006675:IPR002646:IPR006674; KEGG: gfo:GFO_2283 tRNA nucleotidyltransferase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: TRNA nucleotidyltransferase; TIGRFAM: HDIG; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_004346695.1	KEGG: fps:FP1656 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Plasmid pRiA4b ORF-3-like protein
YP_004346696.1	InterPro IPR013217; KEGG: fjo:Fjoh_0485 methyltransferase type 11; PFAM: Methyltransferase type 12; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain
YP_004346697.1	COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: sli:Slin_6313 GumN family protein; PFAM: GumN; SPTR: GumN family protein; PFAM: GumN protein
YP_004346698.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR001179; KEGG: ttu:TERTU_3884 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004346699.1	KEGG: lci:LCK_00633 DNA polymerase III, alpha subunit; SPTR:  uncharacterized protein
YP_004346700.1	KEGG: pat:Patl_1840 TonB-dependent receptor; SPTR: Arabinogalactan endo-1,4-beta-galactosidase
YP_004346701.1	COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR005810:IPR003781:IPR005811; KEGG: fps:FP0972 succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_004346702.1	InterPro IPR013099; KEGG: sli:Slin_0210 K channel inward rectifier conserved region 2 domain protein; PFAM: Ion transport 2; SPTR: Ion transport 2 domain protein; PFAM: Inward rectifier potassium channel
YP_004346703.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: cpi:Cpin_6932 hypothetical protein; PFAM: Radical SAM; SPTR:  uncharacterized protein; PFAM: Radical SAM superfamily
YP_004346704.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR019734:IPR001440:IPR011659:IPR006665; KEGG: phe:Phep_2066 OmpA/MotB domain protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Tetratricopeptide TPR-1; WD40-like Beta Propeller; SMART: Tetratricopeptide repeat; SPTR: OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; Tetratricopeptide repeat
YP_004346705.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: cpi:Cpin_1958 prenyltransferase; PFAM: UbiA prenyltransferase; PRIAM: Geranylgeranylglycerol-phosphate geranylgeranyltransferase; SPTR: UbiA prenyltransferase; PFAM: UbiA prenyltransferase
YP_004346706.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; HAMAP: Maf-like protein; InterPro IPR003697; KEGG: pmz:HMPREF0659_A6734 septum formation protein Maf; PFAM: Maf-like protein; SPTR: Maf-like protein HMPREF6745_2656; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_004346707.1	KEGG: mar:MAE_60080 hypothetical protein; SPTR:  uncharacterized protein
YP_004346708.1	KEGG: dfe:Dfer_5095 peptidase, family M14; SPTR: Peptidase, family M14; PFAM: Zinc carboxypeptidase
YP_004346709.1	COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sli:Slin_3738 transcriptional regulator, HxlR family; PFAM: Helix-turn-helix, HxlR type; SPTR: Transcriptional regulator; PFAM: HxlR-like helix-turn-helix
YP_004346710.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; KEGG: cpi:Cpin_0640 NmrA family protein; SPTR: NmrA family protein; PFAM: NmrA-like family
YP_004346711.1	KEGG: cai:Caci_3812 hypothetical protein; SPTR:  uncharacterized protein
YP_004346712.1	COGs: COG3145 Alkylated DNA repair protein; InterPro IPR005123; KEGG: fjo:Fjoh_1572 2OG-Fe(II) oxygenase; PFAM: Oxoglutarate/iron-dependent oxygenase; SPTR: DNA-N1-methyladenine dioxygenase; PFAM: 2OG-Fe(II) oxygenase superfamily
YP_004346713.1	KEGG: pfh:PFHG_02325 conserved hypothetical protein; SPTR: Inositol phosphatase
YP_004346714.1	KEGG: cpi:Cpin_5412 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Domain of unknown function (DUF1990)
YP_004346715.1	KEGG: hmu:Hmuk_2798 protoheme IX farnesyltransferase; SPTR: Protoheme IX farnesyltransferase
YP_004346716.1	COGs: COG2374 extracellular nuclease; InterPro IPR005135; KEGG: chu:CHU_0946 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase
YP_004346717.1	KEGG: bth:BT_4505 hypothetical protein; SPTR:  uncharacterized protein
YP_004346718.1	InterPro IPR000182; KEGG: fjo:Fjoh_1061 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346719.1	COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR001789:IPR000014:IPR 013656; KEGG: cts:Ctha_0019 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004346720.1	COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: sli:Slin_0282 peptidase M1 membrane alanine aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Aminopeptidase M1 family protein; PFAM: Peptidase M1
YP_004346721.1	KEGG: gau:GAU_2802 hypothetical protein; SPTR: Superoxide dismutase
YP_004346722.1	COGs: COG0492 Thioredoxin reductase; HAMAP: Ferredoxin--NADP reductase; InterPro IPR013027; KEGG: cat:CA2559_00750 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: Ferredoxin--NADP(+) reductase; SPTR: Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004346723.1	COGs: COG2895 GTPase - Sulfate adenylate transferase subunit 1; InterPro IPR011779:IPR005225:IPR000795:IPR004161; KEGG: coc:Coch_1491 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: sulfate adenylyltransferase, large subunit; small GTP-binding protein domain
YP_004346724.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR011784:IPR002500; KEGG: sli:Slin_1696 sulfate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Sulfate adenylyltransferase; SPTR: Sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: sulfate adenylyltransferase, small subunit
YP_004346725.1	COGs: COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase; InterPro IPR011798:IPR002500; KEGG: dfe:Dfer_2615 adenylylsulfate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulphate reductase; PRIAM: Phosphoadenylyl-sulfate reductase (thioredoxin); SPTR: Adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; PFAM: Phosphoadenosine phosphosulfate reductase; TIGRFAM: thioredoxin-dependent adenylylsulfate APS reductase; phosophoadenylyl-sulfate reductase (thioredoxin)
YP_004346726.1	COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367:IPR002781; KEGG: phe:Phep_3090 siroheme synthase; PFAM: Protein of unknown function DUF81; SPTR: Siroheme synthase; TIGRFAM: Sirohaem synthase, N-terminal; PFAM: Sulfite exporter TauE/SafE; TIGRFAM: siroheme synthase, N-terminal domain
YP_004346727.1	COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: phe:Phep_3091 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase (Uroporphyrinogen III methylase); TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase
YP_004346728.1	COGs: COG0155 Sulfite reductase beta subunit (hemoprotein); InterPro IPR005117:IPR006067:IPR007842; KEGG: phe:Phep_3092 nitrite and sulphite reductase 4Fe-4S region; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; HEPN; PRIAM: Ferredoxin--nitrite reductase; SPTR: Sulfite reductase [NADPH] hemoprotein beta subunit; PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain
YP_004346729.1	COGs: COG4989 oxidoreductase; InterPro IPR001395; KEGG: dfe:Dfer_4106 aldo/keto reductase; PFAM: Aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase
YP_004346730.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: gfo:GFO_0321 Rrf2-like transcriptional regulator protein; PFAM: Transcription regulator Rrf2; SPTR: Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator)
YP_004346731.1	InterPro IPR019619; KEGG: tga:TGAM_0453 GTPase subunit of restriction endonuclease; PFAM: Protein of unknown function DUF2490; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF2490)
YP_004346732.1	COGs: COG2173 D-alanyl-D-alanine dipeptidase; InterPro IPR000755; KEGG: sli:Slin_4461 peptidase M15D VanX D-ala-D-ala dipeptidase; PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; SPTR: Peptidase M15D vanX D-ala-D-ala dipeptidase; PFAM: D-ala-D-ala dipeptidase
YP_004346733.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: fps:FP1696 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; PFAM: Aminotransferase class I and II
YP_004346734.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: fps:FP1358 hypothetical protein; PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SPTR:  uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_004346735.1	COGs: COG3920 Signal transduction histidine kinase; InterPro IPR011495:IPR003594; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SPTR: Two-component system sensor histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004346736.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: cat:CA2559_08681 transcriptional regulator; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Transcriptional regulator; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004346737.1	InterPro IPR006558:IPR003961; KEGG: mag:amb3422 hypothetical protein; PFAM: Fibronectin, type III; SMART: LamG-like jellyroll fold; SPTR:  uncharacterized protein
YP_004346738.1	InterPro IPR002126; KEGG: rba:RB886 hypothetical protein; PFAM: Cadherin; SPTR:  uncharacterized protein
YP_004346739.1	InterPro IPR019861; KEGG: gfo:GFO_0053 hypothetical protein; SPTR:  uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific  membrane protein
YP_004346740.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: chu:CHU_0217 outer membrane protein, porin F precursor; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004346741.1	KEGG: ecb:100051814 diaphanous homolog 3 (Drosophila); SPTR: Predicted protein
YP_004346742.1	KEGG: aar:Acear_2050 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; SPTR:  uncharacterized protein
YP_004346743.1	KEGG: mab:MAB_0712c hypothetical protein; SPTR:  uncharacterized protein
YP_004346744.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_2907 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004346745.1	KEGG: tet:TTHERM_00266630 cyclic nucleotide-binding domain containing protein; SPTR: Cation channel family protein
YP_004346746.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: bth:BT_3190  RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004346747.1	KEGG: tva:TVAG_254160 dentin sialophosphoprotein precursor; SPTR: Cell wall surface anchor family protein
YP_004346748.1	COGs: COG2114 Adenylate cyclase 3 (some protein contain HAMP domain); InterPro IPR001789:IPR001054:IPR003607:IPR006674; KEGG: lbf:LBF_2448 adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Metal-dependent phosphohydrolase, HD subdomain; SMART: Adenylyl cyclase class-3/4/guanylyl cyclase; Signal transduction response regulator, receiver domain; Metal-dependent phosphohydrolase, HD domain; SPTR: Adenylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain; HD domain; Response regulator receiver domain
YP_004346749.1	KEGG: chu:CHU_0740 hypothetical protein; SPTR:  uncharacterized protein
YP_004346750.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: cpi:Cpin_6621 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: LytB protein; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_004346751.1	COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR008146; KEGG: zpr:ZPR_3154 glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; PRIAM: Glutamate--ammonia ligase; SPTR: Glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal
YP_004346752.1	KEGG: bur:Bcep18194_B0821 hypothetical protein; SPTR:  uncharacterized protein
YP_004346753.1	KEGG: fba:FIC_02571 hypothetical protein; SPTR:  uncharacterized protein
YP_004346754.1	COGs: COG0404 Glycine cleavage system T protein (aminomethyltransferase); HAMAP: Aminomethyltransferase; InterPro IPR006223:IPR006222:IPR013977; KEGG: fjo:Fjoh_2562 glycine cleavage system aminomethyltransferase T; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; PRIAM: Aminomethyltransferase; SPTR: Aminomethyltransferase; TIGRFAM: Glycine cleavage system T protein; PFAM: Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; TIGRFAM: glycine cleavage system T protein
YP_004346755.1	InterPro IPR000595; KEGG: chu:CHU_2259 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004346756.1	KEGG: sli:Slin_3872 hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein; SPTR: Hydrolase or acyltransferase (Alpha/beta hydrolase superfamily)-like protein; PFAM: BAAT / Acyl-CoA thioester hydrolase C terminal
YP_004346757.1	KEGG: lhk:LHK_00455 probable membrane permease; SPTR:  uncharacterized protein
YP_004346758.1	KEGG: bcm:Bcenmc03_5888 peptidoglycan-associated lipoprotein; SPTR: Fibronectin type III domain protein
YP_004346759.1	COGs: COG2267 Lysophospholipase; KEGG: mma:MM_3198 hypothetical protein; SPTR:  uncharacterized protein; PFAM: X-Pro dipeptidyl-peptidase (S15 family)
YP_004346760.1	KEGG: psb:Psyr_1929 hypothetical protein; SPTR:  uncharacterized protein
YP_004346761.1	KEGG: tva:TVAG_282210 ankyrin repeat protein; SPTR: Ankyrin repeat protein
YP_004346762.1	KEGG: eic:NT01EI_3306 radical SAM domain protein; SPTR:  uncharacterized protein
YP_004346763.1	COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: zpr:ZPR_3275 ISCps6, transposase; PFAM: Transposase, IS4-like; SPTR: ISCps6, transposase; PFAM: Transposase domain (DUF772)
YP_004346764.1	KEGG: fjo:Fjoh_2295 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Activator of Hsp90 ATPase homolog 1-like protein
YP_004346765.1	KEGG: tac:Ta0694 hypothetical protein; SPTR:  conjugal transfer protein
YP_004346766.1	KEGG: pfh:PFHG_02518 conserved hypothetical protein; SPTR:  uncharacterized protein
YP_004346767.1	KEGG: vsa:VSAL_p840_45 transposase; SPTR: AMV029
YP_004346768.1	KEGG: tle:Tlet_0217 extracellular solute-binding protein; SPTR: Extracellular solute-binding protein family 1
YP_004346769.1	KEGG: fjo:Fjoh_2819 hypothetical protein; SPTR:  uncharacterized protein
YP_004346770.1	InterPro IPR018891; KEGG: mmh:Mmah_1986 abortive phage infection; PFAM: Abortive phage infection; SPTR: Abortive phage infection; PFAM: AIPR protein
YP_004346771.1	KEGG: pfl:PFL_5750 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3010)
YP_004346772.1	COGs: COG0515 Serine/threonine protein kinase; InterPro IPR020635:IPR002290:IPR017442; KEGG: reh:PHG107  kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; SPTR:  kinase; PFAM: Protein kinase domain
YP_004346774.1	KEGG: cpi:Cpin_6080 hypothetical protein; SPTR:  uncharacterized protein
YP_004346775.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850; KEGG: tga:TGAM_0940 adenylate kinase; PFAM: Adenylate kinase; SPTR: Adenylate kinase; PFAM: Adenylate kinase
YP_004346776.1	KEGG: slg:SLGD_00818  non-ribosomal peptide synthetase; SPTR:  non-ribosomal peptide synthetase
YP_004346777.1	InterPro IPR019500; KEGG: phe:Phep_2984 hypothetical protein; PFAM: Peptidase S46; SPTR:  uncharacterized protein; PFAM: Peptidase S46
YP_004346778.1	KEGG: lbc:LACBIDRAFT_254518 heterotrimeric G-protein alpha subunit, GPA3-like protein
YP_004346779.1	COGs: COG3537  alpha-1 2-mannosidase; InterPro IPR005887:IPR012939:IPR000421; KEGG: cat:CA2559_08711  alpha-1,2-mannosidase precursor; PFAM: Glycosyl hydrolase 92; Coagulation factor 5/8 type, C-terminal; SPTR:  alpha-1,2-mannosidase; TIGRFAM: Alpha-1,2-mannosidase, PFAM: Glycosyl hydrolase 92; F5/8 type C domain; TIGRFAM: alpha-1,2-mannosidase
YP_004346780.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: bvu:BVU_0191 ROK family transcriptional repressor; PFAM: ROK; PRIAM: Glucokinase; SPTR:  uncharacterized protein; PFAM: ROK family; TIGRFAM: ROK family protein ( glucokinase)
YP_004346781.1	COGs: COG1418 HD superfamily hydrolase; InterPro IPR003607:IPR006674; KEGG: tmz:Tmz1t_2132 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004346782.1	KEGG: fjo:Fjoh_1311 hypothetical protein; SPTR:  uncharacterized protein
YP_004346783.1	COGs: COG0228 Ribosomal protein S16; HAMAP: Ribosomal protein S16; InterPro IPR000307; KEGG: phe:Phep_0035 ribosomal protein S16; PFAM: Ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_004346784.1	COGs: COG0806 RimM protein required for 16S rRNA processing; HAMAP: 16S rRNA processing protein RimM; InterPro IPR011961; KEGG: fps:FP0345 16S rRNA processing protein RimM; SPTR: Ribosome maturation factor rimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_004346785.1	COGs: COG4123 O-methyltransferase; InterPro IPR007848; KEGG: phe:Phep_2972 methyltransferase small; PFAM: Methyltransferase small; SPTR: tRNA (adenine-N(6)-)-methyltransferase; PFAM: Methyltransferase small domain
YP_004346786.1	KEGG: chu:CHU_3340 hypothetical protein; SPTR:  uncharacterized protein
YP_004346787.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: dfe:Dfer_2952 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; PRIAM: processing peptidase; SPTR:  uncharacterized protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16)
YP_004346788.1	COGs: COG0259 Pyridoxamine-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; InterPro IPR000659:IPR011576:IPR019576; KEGG: reu:Reut_A0815 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; PRIAM: Pyridoxal 5'-phosphate synthase; SPTR: Pyridoxine/pyridoxamine 5'-phosphate oxidase; TIGRFAM: Pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase
YP_004346789.1	KEGG: bvu:BVU_3867 hypothetical protein; SPTR:  uncharacterized protein
YP_004346790.1	KEGG: cch:Cag_0616 parallel beta-helix repeat-containing protein; SPTR: Parallel beta-helix repeat
YP_004346791.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: fba:FIC_01548 probable peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Probable peptidase; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16)
YP_004346792.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765:IPR007863; KEGG: gfo:GFO_3583 M16 family peptidase; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; SPTR: Peptidase M16-like protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase M16)
YP_004346793.1	InterPro IPR013431; KEGG: cch:Cag_0738 VCBS; SPTR:  uncharacterized protein; TIGRFAM: Delta-60 repeat; TIGRFAM: delta-60 repeat domain
YP_004346794.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: chu:CHU_0397 cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide binding regulatory protein; PFAM: Cyclic nucleotide-binding domain
YP_004346795.1	COGs: COG2249  NADPH-quinone reductase (modulator of drug activity B); InterPro IPR003680; KEGG: fjo:Fjoh_4532 NAD(P)H dehydrogenase (quinone); PFAM: Flavodoxin-like fold; SPTR: NAD(P)H dehydrogenase (Quinone); PFAM: Flavodoxin-like fold
YP_004346796.1	COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; KEGG: dfe:Dfer_2577 pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme
YP_004346797.1	KEGG: fjo:Fjoh_1910 hypothetical protein; SPTR:  uncharacterized protein
YP_004346798.1	COGs: COG3129 SAM-dependent methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase F; InterPro IPR016909:IPR010286; KEGG: fba:FIC_01717  SAM-dependent methyltransferase; PFAM: S-adenosyl-L-methionine dependent methyltransferase, predicted; PRIAM: rRNA (adenine-N(6)-)-methyltransferase; SPTR: Ribosomal RNA large subunit methyltransferase F; PFAM: Protein of unknown function (DUF890)
YP_004346799.1	KEGG: fjo:Fjoh_2565 hypothetical protein; SPTR:  uncharacterized protein; PFAM: Protein of unknown function (DUF3037)
YP_004346800.1	KEGG: zpr:ZPR_2037 hypothetical protein; SPTR:  uncharacterized protein
YP_004346801.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: aas:Aasi_1051 hypothetical protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; SPTR:  uncharacterized protein; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004346802.1	KEGG: cho:Chro.10168 chloroquine resistance marker protein; SPTR: Chloroquine resistance marker protein
YP_004346803.1	COGs: COG4704 conserved hypothetical protein; InterPro IPR018673; KEGG: sbp:Sbal223_3067 hypothetical protein; PFAM: Protein of unknown function DUF2141; SPTR:  uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2141)
YP_004346804.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: phe:Phep_3084 periplasmic binding protein; PFAM: Periplasmic binding protein; SPTR: ABC-type Fe3+-siderophores transport systems; PFAM: Periplasmic binding protein
YP_004346805.1	COGs: COG0031 Cysteine synthase; InterPro IPR000644:IPR001926; KEGG: fjo:Fjoh_1927 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cystathionine beta-synthase, core; PRIAM: Cysteine synthase; SMART: Cystathionine beta-synthase, core; SPTR: Cysteine synthase; PFAM: CBS domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cystathionine beta-synthase
YP_004346806.1	KEGG: cpi:Cpin_0142 hypothetical protein; SPTR:  uncharacterized protein
YP_004346807.1	KEGG: smm:Smp_149260 kinesin eg-5; SPTR: Kinesin eg-5
YP_004346808.1	InterPro IPR003140; KEGG: sli:Slin_0089 hypothetical protein; PFAM: Phospholipase/carboxylesterase; SPTR:  uncharacterized protein; PFAM: Serine hydrolase (FSH1)
YP_004346809.1	KEGG: cpi:Cpin_6912 hypothetical protein; SPTR:  uncharacterized protein
YP_004346810.1	COGs: COG1670 Acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR000182; KEGG: aoe:Clos_0341 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family
YP_004346811.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: swp:swp_0877 peptidyl-prolyl cis-trans isomerase, FKBP-type; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_004346812.1	COGs: COG0545 FKBP-type peptidyl-prolyl cis-trans isomerase 1; InterPro IPR000774:IPR001179; KEGG: sde:Sde_1555 peptidyl-prolyl cis-trans isomerase FklB; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal; PRIAM: Peptidylprolyl isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_004346813.1	InterPro IPR000182; KEGG: cat:CA2559_09031 transcriptional regulator, MarR family protein; PFAM: GCN5-related N-acetyltransferase; SPTR: Transcriptional regulator, MarR family protein; PFAM: Acetyltransferase (GNAT) family
YP_004346814.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bth:BT_2498  outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR:  outer membrane lipoprotein; PFAM: Outer membrane efflux protein
YP_004346815.1	KEGG: fjo:Fjoh_1297 hypothetical protein; SPTR:  hemolysin secretion transport system membrane protein
YP_004346816.1	COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003593:IPR005074:IPR001140:IPR003439; KEGG: fjo:Fjoh_1296 ABC transporter related; PFAM: ABC transporter-like; Peptidase C39, bacteriocin processing; ABC transporter, transmembrane domain; PRIAM: Peptide-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR:  hemolysin secretion transport system ATP-binding protein; PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region
YP_004346817.1	KEGG: dth:DICTH_0216 hypothetical protein; SPTR:  uncharacterized protein
YP_004346818.1	SPTR: DNA-directed RNA polymerase subunit beta''
YP_004346819.1	KEGG: hau:Haur_5021 RimK domain-containing protein ATP-grasp; SPTR:  uncharacterized protein; PFAM: RimK-like ATP-grasp domain
YP_004346820.1	KEGG: bcl:ABC0595 hypothetical protein; SPTR:  uncharacterized protein
YP_004346821.1	KEGG: pyo:PY03086 hypothetical protein; SPTR:  uncharacterized protein PY03086
YP_004346823.1	COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277; KEGG: phe:Phep_1425 methionine gamma-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; PRIAM: Cystathionine gamma-lyase; SPTR: Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase
YP_004346824.1	COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: lbf:LBF_4142 redox protein, regulator of disulfide bond formation; PFAM: Peroxiredoxin, OsmC-like protein; SPTR:  uncharacterized protein; PFAM: OsmC-like protein
YP_004346825.1	COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106:IPR001342; KEGG: cpi:Cpin_1962 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain
YP_004346826.1	COGs: COG2021 Homoserine acetyltransferase; InterPro IPR006296:IPR000073; KEGG: phe:Phep_1874 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: Homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_004346827.1	COGs: COG1760 L-serine deaminase; InterPro IPR004644:IPR005131:IPR005130; KEGG: phe:Phep_0239 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; SPTR: L-serine dehydratase 1; TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form; L-serine dehydratase, iron-sulfur-dependent, beta subunit
YP_004346828.1	COGs: COG3022 conserved hypothetical protein; HAMAP: UPF0246 protein yaaA; InterPro IPR005583; KEGG: nve:NEMVE_v1g224867 hypothetical protein; PFAM: Protein of unknown function DUF328; SPTR: Predicted protein; PFAM: Protein of unknown function (DUF328)
YP_004346829.1	InterPro IPR000601; KEGG: fps:FP0688 hypothetical protein; PFAM: PKD; SPTR:  uncharacterized protein
YP_004346830.1	KEGG: vpa:VP0054 hypothetical protein; SPTR: Aldehyde dehydrogenase
YP_004346831.1	COGs: COG0579 dehydrogenase; InterPro IPR006076; KEGG: ana:alr2826 hydroxyglutarate oxidase; PFAM: FAD dependent oxidoreductase; SPTR:  uncharacterized protein; PFAM: FAD dependent oxidoreductase
YP_004346832.1	COGs: COG1835 acyltransferase; InterPro IPR002656; KEGG: fjo:Fjoh_0306 acyltransferase 3; PFAM: Acyltransferase 3; SPTR: Acyltransferase 3; PFAM: Acyltransferase
YP_004346833.1	KEGG: gfo:GFO_2360 hypothetical protein; SPTR:  uncharacterized protein
YP_004346834.1	COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006055:IPR000305:IPR006054:IPR013520; KEGG: cat:CA2559_09513 probable DNA-directed DNA polymerase III (epsilon subunit); PFAM: Exonuclease, RNase T/DNA polymerase III; Excinuclease ABC, C subunit, N-terminal; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; Excinuclease ABC, C subunit, N-terminal; SPTR: Probable DNA-directed DNA polymerase III (Epsilon subunit); TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004346835.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR005791:IPR003335:IPR005665; KEGG: phe:Phep_1420 bifunctional preprotein translocase subunit SecD/SecF; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; SecF protein; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_004346836.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: pdi:BDI_2776 glycosyl transferase; PFAM: Glycosyl transferase, group 1; SPTR: Glycosyltransferase 4; PFAM: Glycosyl transferases group 1
YP_004346837.1	KEGG: sli:Slin_1651 hypothetical protein; SPTR: Lipoprotein
YP_004346838.1	COGs: COG2849 conserved hypothetical protein; InterPro IPR011652; KEGG: zpr:ZPR_2922 aspartic peptidase; SPTR:  uncharacterized protein; PFAM: MORN repeat variant
YP_004346839.1	COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543:IPR006549; KEGG: cpi:Cpin_3112 histidinol-phosphate phosphatase; SPTR: Histidinol-phosphate phosphatase; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase domain
YP_004346840.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: pdi:BDI_0175 glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: Group 2 glycosyl transferase; PFAM: Glycosyl transferase 2
YP_004346841.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR003593:IPR017730:IPR004176:IPR003959:IPR 013093:IPR019489; KEGG: fjo:Fjoh_3422 ATPase; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: ATPase AAA-2 domain protein; TIGRFAM: Chaperonin ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_004346842.1	COGs: COG2949 Uncharacterized membrane protein; InterPro IPR003848; KEGG: bfs:BF2643  transport-related membrane protein; PFAM: Protein of unknown function DUF218; SPTR: SanA protein; PFAM: DUF218 domain
YP_004346843.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: chu:CHU_2275 cytochrome c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome C peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase
YP_004346844.1	COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852; KEGG: dfe:Dfer_5340 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: Cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase
YP_004346845.1	KEGG: chu:CHU_0522 hypothetical protein; SPTR:  uncharacterized protein
YP_004346846.1	KEGG: fps:FP0952 hypothetical protein; SPTR:  uncharacterized protein
YP_004346847.1	KEGG: mev:Metev_0246 hypothetical protein; SPTR:  uncharacterized protein
YP_004346848.1	InterPro IPR002921; KEGG: sli:Slin_0221 protein of unknown function DUF306 MetA and HslJ; PFAM: Lipase, class 3; SPTR:  uncharacterized protein; PFAM: Lipase (class 3)
YP_004346849.1	KEGG: chu:CHU_0299 hypothetical protein; SPTR:  uncharacterized protein
YP_004346850.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR019734:IPR001440:IPR010822; KEGG: lbl:LBL_2179 signal transduction protein; PFAM: Sporulation stage II, protein E C-terminal; Tetratricopeptide TPR-1; SPTR: Serine/threonine protein kinases; PFAM: Stage II sporulation protein E (SpoIIE); Tetratricopeptide repeat
YP_004346851.1	COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR012910:IPR000531; KEGG: fbc:FB2170_04705 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004346852.1	KEGG: aae:aq_1998 flagellin; SPTR: VCBS protein
YP_004346853.1	InterPro IPR001258; KEGG: mrb:Mrub_1014 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein
YP_004346854.1	InterPro IPR001547; KEGG: fsu:Fisuc_2933 carbohydrate-binding CenC domain protein; PFAM: Glycoside hydrolase, family 5; SPTR: Coagulation factor 5/8 type-like protein; PFAM: Cellulase (glycosyl hydrolase 5)
YP_004346855.1	COGs: COG3275  regulator of cell autolysis; InterPro IPR011110:IPR010559:IPR003594; KEGG: cpi:Cpin_1400 signal transduction histidine kinase, LytS; PFAM: Signal transduction histidine kinase, internal region; Two component regulator propeller; ATPase-like, ATP-binding domain; SPTR: Signal transduction histidine kinase, LytS; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller
YP_004346856.1	COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: dfe:Dfer_1279 two component transcriptional regulator, LytTR family; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; SPTR: Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain
YP_004346857.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593:IPR003439; KEGG: gfo:GFO_0538 ABC-type transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter
YP_004346858.1	KEGG: zpr:ZPR_0971 membrane protein; SPTR:  uncharacterized protein
YP_004346859.1	KEGG: fps:FP0278 hypothetical protein; SPTR:  uncharacterized protein
YP_004346860.1	KEGG: sta:STHERM_c19770 hypothetical protein; SPTR: Conserved repeat domain protein
YP_004346861.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789:IPR000792; KEGG: cpi:Cpin_3102 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004346862.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR011110:IPR011123:IPR003594; KEGG: cpi:Cpin_3101 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two component regulator three Y; Two component regulator propeller; SPTR: Histidine kinase; PFAM: Y_Y_Y domain; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller
YP_004346863.1	COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027; KEGG: chu:CHU_0250 NADH dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PRIAM: NADH dehydrogenase (ubiquinone); SPTR: NADH dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004346864.1	COGs: COG0082 Chorismate synthase; InterPro IPR000453; KEGG: coc:Coch_2149 chorismate synthase; PFAM: Chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_004346865.1	KEGG: cyn:Cyan7425_0299 hypothetical protein; SPTR:  uncharacterized protein
YP_004346866.1	KEGG: fjo:Fjoh_2959 hypothetical protein; SPTR:  uncharacterized protein
YP_004346867.1	COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845:IPR005846:IPR005843; KEGG: rmr:Rmar_0372 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; PRIAM: Phosphoglucosamine mutase; SPTR: Phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004346868.1	KEGG: pmt:PMT0253 galanin; SPTR: Possible Galanin; PFAM: Protein of unknown function (DUF3137)
YP_004346869.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: pmf:P9303_21021 hypothetical protein; PFAM: LemA; SPTR:  lemA protein; PFAM: LemA family
YP_004346870.1	COGs: COG2267 Lysophospholipase; InterPro IPR000073; KEGG: prw:PsycPRwf_0898 lysophospholipase-like protein; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold family hydrolase; PFAM:  lysophospholipase
YP_004346871.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR010164:IPR005814; KEGG: fps:FP0739 ornithine--oxo-acid transaminase; PFAM: Aminotransferase class-III; PRIAM: Ornithine aminotransferase; SPTR: Acetylornithine aminotransferase, ; TIGRFAM: Ornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: ornithine aminotransferase
YP_004346872.1	COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: chu:CHU_3762 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; PRIAM: Linoleoyl-CoA desaturase; SPTR: Fatty acid desaturase; PFAM: Fatty acid desaturase
YP_004346873.1	KEGG: pdi:BDI_3712  ATPase; SPTR:  uncharacterized protein; PFAM: Archaeal ATPase
YP_004346875.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205; KEGG: fjo:Fjoh_2475 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA gyrase/topoisomerase IV, subunit A
YP_004346876.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594:IPR001241:IPR013506:IPR006171; KEGG: fbc:FB2170_10766 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA topoisomerase IV subunit B; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus
YP_004346877.1	KEGG: chu:CHU_1839 hypothetical protein; SPTR:  uncharacterized protein
YP_004346878.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR004488:IPR002523; KEGG: zpr:ZPR_2010 magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_004346879.1	KEGG: cag:Cagg_1394 carboxypeptidase Taq; SPTR: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
YP_004346880.1	KEGG: chu:CHU_1718 hypothetical protein; SPTR:  uncharacterized protein
YP_004346881.1	COGs: COG0010 Arginase/agmatinase/formimionoglutamate hydrolase arginase; InterPro IPR006035; KEGG: zpr:ZPR_1653 formimidoylglutamase; PFAM: Ureohydrolase; SPTR: Formimidoylglutamase; PFAM: Arginase
YP_004346882.1	COGs: COG0824 thioesterase; InterPro IPR006684:IPR006683; KEGG: chu:CHU_1073 thioesterase; PFAM: Thioesterase superfamily; SPTR: Probable thioesterase; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; tol-pal system-associated acyl-CoA thioesterase