========================[ Jun 3, 2008 5:03 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" NOTE: CoreLib [002.003] FileOpen("/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta","r") failed ERROR: [000.000] Could not open /bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta ========================[ Jun 3, 2008 5:05 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" NOTE: CoreLib [002.003] FileOpen("/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta","r") failed ERROR: [000.000] Could not open /bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta ========================[ Jun 3, 2008 5:06 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" NOTE: CoreLib [002.003] FileOpen("/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta","r") failed ERROR: [000.000] Could not open /bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta ========================[ Jun 3, 2008 5:06 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa2.fasta" NOTE: CoreLib [002.003] FileOpen("/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa2.fasta","r") failed ERROR: [000.000] Could not open /bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa2.fasta ========================[ Jun 3, 2008 5:21 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" NOTE: CoreLib [002.003] FileOpen("/bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta","r") failed ERROR: [000.000] Could not open /bio/rsa-tools//rsa-tools/data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta ========================[ Jun 3, 2008 5:26 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" Formatted 13321 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Aspergillus_fumigatus/genome/Aspergillus_fumigatus_aa.fasta" Formatted 9630 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Aspergillus_nidulans/genome/Aspergillus_nidulans_aa.fasta" Formatted 9541 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Aspergillus_oryzae/genome/Aspergillus_oryzae_aa.fasta" Formatted 12074 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Aspergillus_terreus/genome/Aspergillus_terreus_aa.fasta" Formatted 10406 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Batrachochytrium_dendrobatidis/genome/Batrachochytrium_dendrobatidis_aa.fasta" WARNING: [000.000] Sequence number 70 (lcl|Fe2+transporters), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 79 (lcl|G-specificadenine), 3 illegal characters were removed: 2 Os, 1 - WARNING: [000.000] Sequence number 154 (lcl|MPK1(translation)), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 174 (lcl|mangeneaseP-type), 2 illegal characters were removed: 1 O, 1 - WARNING: [000.000] Sequence number 402 (lcl|mannosyl-oligosaccharide), 8 illegal characters were removed: 5 Os, 3 -s WARNING: [000.000] Sequence number 555 (lcl|SMU1(translation)), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 762 (lcl|S27afusion), 3 illegal characters were removed: 3 Os WARNING: [000.000] Sequence number 894 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 986 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 1010 (lcl|transporter), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 1070 (lcl|fumaratemitochondrial), 4 illegal characters were removed: 4 Os WARNING: [000.000] Sequence number 1222 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 1494 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 1947 (lcl|hydrogenexchanger), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 2271 (lcl|U6.U5tri-snRNP-associated), 5 illegal characters were removed: 3 Os, 2 -s WARNING: [000.000] Sequence number 2423 (lcl|ACAribonucleoprotein), 5 illegal characters were removed: 5 Os WARNING: [000.000] Sequence number 2424 (lcl|AMP-acidligases), 2 illegal characters were removed: 1 O, 1 - WARNING: [000.000] Sequence number 2437 (lcl|microtubule-bindingprotein), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 2726 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 2731 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 2767 (lcl|Fru-2,6-P2ASEliver), 4 illegal characters were removed: 2 Os, 2 -s WARNING: [000.000] Sequence number 2834 (lcl|threonine-proteinphosphatase), 7 illegal characters were removed: 5 Os, 2 -s WARNING: [000.000] Sequence number 2976 (lcl|IIIsubunit), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 3003 (lcl|3complex), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 3118 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 3335 (lcl|mitotic-specificcyclin), 3 illegal characters were removed: 2 Os, 1 - WARNING: [000.000] Sequence number 3419 (lcl|TSAfamily), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 3670 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 3790 (lcl|reductaseSDR), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 4091 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 4149 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 4200 (lcl|threoninekinase), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 4676 (lcl|oxidase(translation)), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 4700 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 4757 (lcl|threonine-proteinkinase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 4854 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 5102 (lcl|ACAribonucleoprotein), 5 illegal characters were removed: 5 Os WARNING: [000.000] Sequence number 5326 (lcl|MRKoverlapping), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 5476 (lcl|HDAC3complex), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 5480 (lcl|phenylalanine-tRNA), 2 illegal characters were removed: 1 O, 1 - WARNING: [000.000] Sequence number 5624 (lcl|atpnad), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 6047 (lcl|DNAlyase), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 6142 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 6254 (lcl|threonine-proteinphosphatase), 5 illegal characters were removed: 4 Os, 1 - WARNING: [000.000] Sequence number 6255 (lcl|threonineprotein), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 6497 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 6552 (lcl|menaquinonebiosynthesis), 3 illegal characters were removed: 3 Os WARNING: [000.000] Sequence number 6570 (lcl|S29e(translation)), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 6573 (lcl|threoninekinase), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 7264 (lcl|threonine-proteinphosphatase), 6 illegal characters were removed: 5 Os, 1 - WARNING: [000.000] Sequence number 7330 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 7409 (lcl|nucleotide), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 7454 (lcl|endoplasmicreticulum), 2 illegal characters were removed: 2 Os WARNING: [000.000] Sequence number 7618 (lcl|calmodulin-dependentprotein), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 7663 (lcl|threonineprotein), 4 illegal characters were removed: 4 Os WARNING: [000.000] Sequence number 7700 (lcl|threonineprotein), 3 illegal characters were removed: 3 Os WARNING: [000.000] Sequence number 8012 (lcl|threonine-proteinkinase), 4 illegal characters were removed: 3 Os, 1 - WARNING: [000.000] Sequence number 8036 (lcl|damaged), 1 illegal character was removed: 1 O WARNING: [000.000] Sequence number 8253 (lcl|calmodulin-dependentprotein), 4 illegal characters were removed: 3 Os, 1 - Formatted 8818 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Candida_albicans/genome/Candida_albicans_aa.fasta" Formatted 6107 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Candida_dubliniensis/genome/Candida_dubliniensis_aa.fasta" Formatted 6686 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Candida_glabrata_CBS138/genome/Candida_glabrata_CBS138_aa.fasta" Formatted 5181 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Candida_guilliermondii/genome/Candida_guilliermondii_aa.fasta" Formatted 5920 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Candida_lusitaniae/genome/Candida_lusitaniae_aa.fasta" Formatted 5941 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Candida_tropicalis/genome/Candida_tropicalis_aa.fasta" Formatted 6258 sequences in volume 0 ========================[ Jun 3, 2008 5:28 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Chaetomium_globosum/genome/Chaetomium_globosum_aa.fasta" Formatted 11124 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Coccidioides_immitis/genome/Coccidioides_immitis_aa.fasta" Formatted 10457 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Cryptococcus_neoformans_var_JEC21/genome/Cryptococcus_neoformans_var_JEC21_aa.fasta" Formatted 6475 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Debaryomyces_hansenii_CBS767/genome/Debaryomyces_hansenii_CBS767_aa.fasta" Formatted 6316 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Encephalitozoon_cuniculi/genome/Encephalitozoon_cuniculi_aa.fasta" Formatted 1996 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Eremothecium_gossypii/genome/Eremothecium_gossypii_aa.fasta" Formatted 4714 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Fusarium_graminearum//genome/Fusarium_graminearum_aa.fasta" Formatted 13321 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Fusarium_oxysporum//genome/Fusarium_oxysporum_aa.fasta" Formatted 17608 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Fusarium_verticillioides//genome/Fusarium_verticillioides_aa.fasta" Formatted 14195 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Histoplasma_capsulatum/genome/Histoplasma_capsulatum_aa.fasta" Formatted 9349 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Kluyveromyces_lactis_NRRL_Y-1140/genome/Kluyveromyces_lactis_NRRL_Y-1140_aa.fasta" Formatted 5327 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Kluyveromyces_waltii/genome/Kluyveromyces_waltii_aa.fasta" Formatted 5350 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Lodderomyces_elongisporus/genome/Lodderomyces_elongisporus_aa.fasta" Formatted 5799 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Magnaporthe_grisea/genome/Magnaporthe_grisea_aa.fasta" Formatted 11109 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Neurospora_crassa/genome/Neurospora_crassa_aa.fasta" Formatted 9845 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Phanerochaete_chrysosporium/genome/Phanerochaete_chrysosporium_aa.fasta" Formatted 11631 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Puccinia_graminis/genome/Puccinia_graminis_aa.fasta" Formatted 20567 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Rhizopus_oryzae/genome/Rhizopus_oryzae_aa.fasta" Formatted 16468 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_bayanus/genome/Saccharomyces_bayanus_aa.fasta" Formatted 5666 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_castellii/genome/Saccharomyces_castellii_aa.fasta" Formatted 5864 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Saccharomyces_cerevisiae/genome/Saccharomyces_cerevisiae_aa.fasta" Formatted 5880 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_kluyveri/genome/Saccharomyces_kluyveri_aa.fasta" Formatted 6083 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_kudriavzevii/genome/Saccharomyces_kudriavzevii_aa.fasta" Formatted 6371 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_mikatae/genome/Saccharomyces_mikatae_aa.fasta" Formatted 5884 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Saccharomyces_paradoxus/genome/Saccharomyces_paradoxus_aa.fasta" Formatted 5624 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools//data/genomes/Schizosaccharomyces_japonicus_yFS275/genome/Schizosaccharomyces_japonicus_yFS275_aa.fasta" Formatted 5167 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Schizosaccharomyces_pombe/genome/Schizosaccharomyces_pombe_aa.fasta" Formatted 5045 sequences in volume 0 ========================[ Jun 3, 2008 5:29 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Sclerotinia_sclerotiorum/genome/Sclerotinia_sclerotiorum_aa.fasta" Formatted 14522 sequences in volume 0 ========================[ Jun 3, 2008 5:30 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Stagonospora_nodorum/genome/Stagonospora_nodorum_aa.fasta" Formatted 16597 sequences in volume 0 ========================[ Jun 3, 2008 5:30 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Trichoderma_reesei/genome/Trichoderma_reesei_aa.fasta" Formatted 13248 sequences in volume 0 ========================[ Jun 3, 2008 5:30 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Uncinocarpus_reesii/genome/Uncinocarpus_reesii_aa.fasta" Formatted 7798 sequences in volume 0 ========================[ Jun 3, 2008 5:30 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Ustilago_maydis/genome/Ustilago_maydis_aa.fasta" Formatted 6522 sequences in volume 0 ========================[ Jun 3, 2008 5:30 PM ]======================== Version 2.2.11 [Jun-05-2005] Started database file "/bio/rsa-tools/data/genomes/Yarrowia_lipolytica_CLIB99/genome/Yarrowia_lipolytica_CLIB99_aa.fasta" Formatted 6520 sequences in volume 0