-- dump date 20120504_145249 -- class Genbank::CDS -- table cds_note -- id note YP_004432238.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: pat:Patl_0001 chromosomal replication initiator protein DnaA; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_004432239.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; KEGG: pat:Patl_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_004432240.1 KEGG: pat:Patl_0003 DNA replication and repair protein RecF; TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein YP_004432241.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase, B subunit; KEGG: pat:Patl_0004 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein YP_004432242.1 KEGG: pat:Patl_0005 aspartate racemase; TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004432243.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_0006 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432244.1 KEGG: pat:Patl_0007 hypothetical protein YP_004432245.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: pat:Patl_0008 glycyl-tRNA synthetase subunit beta YP_004432246.1 TIGRFAM: glycyl-tRNA synthetase, alpha subunit; KEGG: pat:Patl_0009 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit YP_004432247.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: pat:Patl_0010 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase YP_004432248.1 PFAM: Domain of unknown function DUF2489; KEGG: pat:Patl_0011 hypothetical protein YP_004432249.1 PFAM: protein of unknown function DUF414; KEGG: pat:Patl_0012 hypothetical protein YP_004432250.1 PFAM: cytochrome c class I; KEGG: pat:Patl_0013 cytochrome c, class I YP_004432251.1 KEGG: pat:Patl_0014 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related YP_004432252.1 SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; 3'-5' exonuclease; DNA-directed DNA polymerase; TIGRFAM: DNA polymerase I; KEGG: pat:Patl_0015 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease YP_004432253.1 KEGG: pat:Patl_0016 TrkH family potassium uptake protein; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_004432254.1 PFAM: TraT complement resistance family protein; KEGG: pat:Patl_0017 TraT complement resistance YP_004432255.1 KEGG: pat:Patl_0018 hypothetical protein YP_004432256.1 KEGG: pat:Patl_0019 hypothetical protein YP_004432257.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: pat:Patl_0020 potassium transporter peripheral membrane component YP_004432258.1 KEGG: pat:Patl_0021 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44 YP_004432259.1 KEGG: pat:Patl_0022 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_004432260.1 KEGG: pat:Patl_0023 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_004432261.1 KEGG: pat:Patl_0024 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM YP_004432262.1 KEGG: pat:Patl_0025 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein YP_004432263.1 PFAM: protein of unknown function DUF494; KEGG: pat:Patl_0026 hypothetical protein YP_004432264.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: pat:Patl_0027 DNA topoisomerase, type IA, Zn finger YP_004432265.1 PFAM: SUA5/yciO/yrdC domain; KEGG: pat:Patl_0028 SUA5/YciO/YrdC-like YP_004432266.1 KEGG: pat:Patl_0029 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase YP_004432267.1 PFAM: OmpW family protein; KEGG: pat:Patl_0030 OmpW YP_004432268.1 KEGG: pat:Patl_0031 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase YP_004432269.1 PFAM: protein of unknown function DUF1488; KEGG: pat:Patl_0032 hypothetical protein YP_004432270.1 KEGG: pat:Patl_0033 carbonic anhydrase/acetyltransferase YP_004432271.1 KEGG: vex:VEA_003014 DNA polymerase III alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; manually curated; TIGRFAM: DNA polymerase III, alpha subunit; SMART: phosphoesterase PHP domain protein YP_004432272.1 KEGG: pat:Patl_0035 hypothetical protein YP_004432273.1 KEGG: pat:Patl_0036 hypothetical protein YP_004432274.1 SMART: Helix-turn-helix, AraC domain; KEGG: pha:PSHAa0435 transcriptional regulator YP_004432275.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pha:PSHAa0436 GGDEF domain-containing protein; SMART: GGDEF domain containing protein YP_004432276.1 KEGG: amc:MADE_02398 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004432277.1 KEGG: amc:MADE_02400 acid phosphatase; PFAM: metallophosphoesterase YP_004432278.1 KEGG: pha:PSHAa0438 phytase domain-containing protein; PFAM: phytase YP_004432279.1 PFAM: protein of unknown function DUF55; KEGG: pat:Patl_0037 hypothetical protein YP_004432280.1 KEGG: pat:Patl_0038 hypothetical protein YP_004432281.1 KEGG: pat:Patl_0039 hypothetical protein YP_004432282.1 PFAM: protein of unknown function DUF885; KEGG: pat:Patl_0040 hypothetical protein YP_004432283.1 PFAM: Domain of unknown function DUF1820; KEGG: pat:Patl_0041 hypothetical protein YP_004432284.1 PFAM: peptidase M28; KEGG: pat:Patl_0042 peptidase M28 YP_004432285.1 PFAM: protein of unknown function DUF885; KEGG: pat:Patl_0043 hypothetical protein YP_004432286.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0044 nucleoid occlusion protein YP_004432287.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: pat:Patl_0045 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_004432288.1 KEGG: pat:Patl_0046 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC YP_004432289.1 PFAM: glycosyl transferase family 2; KEGG: pat:Patl_0047 glycosyl transferase family protein YP_004432290.1 KEGG: pat:Patl_0048 ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28 YP_004432291.1 KEGG: pat:Patl_0049 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33 YP_004432292.1 KEGG: pat:Patl_0050 hypothetical protein YP_004432293.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: pat:Patl_0051 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding YP_004432294.1 PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; KEGG: pat:Patl_0052 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_004432295.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: pat:Patl_0053 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase YP_004432296.1 KEGG: pat:Patl_0054 hypothetical protein YP_004432297.1 KEGG: pat:Patl_0055 3-deoxy-D-manno-octulosonic-acid kinase YP_004432298.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_0056 glycosyl transferase, group 1 YP_004432299.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; glycosyl transferase group 1; KEGG: pat:Patl_0057 3-deoxy-D-manno-octulosonic-acid transferase-like YP_004432300.1 KEGG: pat:Patl_0058 hypothetical protein YP_004432301.1 KEGG: pat:Patl_0059 hypothetical protein YP_004432302.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_0060 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004432303.1 TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; KEGG: pat:Patl_0061 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class I and II YP_004432304.1 KEGG: pat:Patl_0062 L-threonine 3-dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein YP_004432305.1 PFAM: Rhodanese domain protein; KEGG: pat:Patl_0063 thiosulfate sulfurtransferase; SMART: Rhodanese domain protein YP_004432306.1 PFAM: Rhomboid family protein; KEGG: pat:Patl_0064 rhomboid-like protein YP_004432307.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pat:Patl_0065 flagellar basal body-associated protein FliL-like protein YP_004432308.1 KEGG: pat:Patl_0066 chorismate lyase; PFAM: Chorismate lyase YP_004432309.1 KEGG: pat:Patl_0067 4-hydroxybenzoate polyprenyl transferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase YP_004432310.1 KEGG: pat:Patl_0068 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004432311.1 PFAM: protein of unknown function DUF526; KEGG: pat:Patl_0069 hypothetical protein YP_004432312.1 KEGG: pat:Patl_0070 ATP-dependent DNA helicase Rep; TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase YP_004432313.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; EAL domain protein; KEGG: pat:Patl_0071 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein; EAL domain protein YP_004432314.1 PFAM: cytochrome c class I; KEGG: pat:Patl_0072 cytochrome c, class I YP_004432315.1 KEGG: pat:Patl_0073 DNA ligase; PFAM: ATP dependent DNA ligase YP_004432316.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0074 alpha/beta hydrolase fold YP_004432317.1 PFAM: Fe(II) trafficking protein YggX; KEGG: pat:Patl_0075 hypothetical protein YP_004432318.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; KEGG: pat:Patl_0076 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_004432319.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0077 alpha/beta hydrolase fold YP_004432320.1 KEGG: pat:Patl_0078 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase YP_004432321.1 PFAM: methyltransferase small; Methyltransferase small domain protein; KEGG: pat:Patl_0079 rRNA (guanine-N(2)-)-methyltransferase YP_004432322.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; KEGG: pat:Patl_0080 glycogen synthase; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1 YP_004432323.1 KEGG: dme:Dmel_CG9392 CG9392 gene product from transcript CG9392-RA YP_004432324.1 KEGG: pat:Patl_0081 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein YP_004432325.1 KEGG: pat:Patl_0082 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein YP_004432326.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pat:Patl_0083 FxsA cytoplasmic membrane protein YP_004432327.1 KEGG: pat:Patl_0084 thiol:disulfide interchange protein precursor; PFAM: cytochrome c biogenesis protein transmembrane region YP_004432328.1 KEGG: pat:Patl_0085 hypothetical protein YP_004432329.1 KEGG: pat:Patl_0086 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004432330.1 PFAM: protein of unknown function DUF479; KEGG: pat:Patl_0087 hypothetical protein YP_004432331.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: pat:Patl_0088 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II YP_004432332.1 KEGG: pat:Patl_0089 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein YP_004432333.1 KEGG: pat:Patl_0090 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein YP_004432334.1 KEGG: pat:Patl_0091 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004432335.1 KEGG: pat:Patl_0092 ribosomal protein L11 methyltransferase; TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase YP_004432336.1 PFAM: helix-turn-helix HxlR type; KEGG: pat:Patl_0093 HxlR family transcriptional regulator YP_004432337.1 PFAM: protein of unknown function DUF1555; KEGG: dre:334171 wu:fi34e01 YP_004432338.1 KEGG: cps:CPS_3716 glycosy hydrolase family protein; PFAM: glycoside hydrolase family 16; Carbohydrate-binding CenC domain protein YP_004432339.1 KEGG: cps:CPS_2235 hypothetical protein YP_004432340.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pat:Patl_0095 inosine/uridine-preferring nucleoside hydrolase YP_004432341.1 KEGG: pat:Patl_0096 hypothetical protein YP_004432342.1 KEGG: pat:Patl_0100 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004432343.1 KEGG: pat:Patl_0101 OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein YP_004432345.1 KEGG: pat:Patl_0102 ATPase; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_004432346.1 PFAM: VWA containing CoxE family protein; KEGG: pat:Patl_0103 VWA containing CoxE-like YP_004432347.1 KEGG: pat:Patl_0104 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004432348.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0105 acyl-CoA dehydrogenase-like YP_004432349.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0106 acyl-CoA dehydrogenase-like YP_004432350.1 KEGG: pgu:PGUG_04171 hypothetical protein YP_004432351.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_0203 TonB-dependent receptor, plug YP_004432352.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_0204 major facilitator transporter YP_004432353.1 KEGG: pat:Patl_0205 hypothetical protein YP_004432354.1 SMART: regulatory protein ArsR; KEGG: vfi:VF_A0176 ArsR family transcriptional regulator YP_004432355.1 PFAM: permease; KEGG: vfi:VF_A0175 hypothetical protein YP_004432356.1 KEGG: pat:Patl_0206 hypothetical protein YP_004432357.1 KEGG: pat:Patl_0207 twin-arginine translocation pathway signal YP_004432358.1 PFAM: formyl transferase domain protein; KEGG: mag:amb3521 methionyl-tRNA formyltransferase YP_004432359.1 PFAM: protein of unknown function DUF344; KEGG: pat:Patl_0210 hypothetical protein YP_004432360.1 PFAM: Patatin; KEGG: pat:Patl_0211 patatin YP_004432361.1 PFAM: aminotransferase class V; KEGG: pat:Patl_0212 aminotransferase, class V YP_004432362.1 PFAM: protein of unknown function DUF161; KEGG: pat:Patl_0213 hypothetical protein YP_004432363.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_0214 glyoxalase/bleomycin resistance protein/dioxygenase YP_004432364.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: pat:Patl_0215 adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase YP_004432365.1 PFAM: Protein of unknown function DUF2065; KEGG: pat:Patl_0216 hypothetical protein YP_004432366.1 KEGG: pat:Patl_0217 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004432367.1 KEGG: pat:Patl_0218 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004432368.1 KEGG: pat:Patl_0219 hypothetical protein YP_004432369.1 KEGG: pat:Patl_0220 hypothetical protein YP_004432370.1 KEGG: pat:Patl_0221 hypothetical protein YP_004432371.1 KEGG: pat:Patl_0222 hypothetical protein YP_004432372.1 KEGG: pat:Patl_0223 peptidase M42 YP_004432373.1 KEGG: pat:Patl_0224 phosphoribulokinase YP_004432374.1 KEGG: pat:Patl_0225 osmolarity response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein YP_004432375.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pat:Patl_0226 osmolarity sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004432376.1 PFAM: Hsp33 protein; KEGG: pat:Patl_0227 HSP33-like chaperonin YP_004432377.1 KEGG: pat:Patl_0228 RNA-binding S4; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004432378.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0229 short-chain dehydrogenase/reductase SDR YP_004432379.1 TIGRFAM: general secretion pathway protein C; KEGG: pat:Patl_0230 general secretion pathway protein C YP_004432380.1 KEGG: pat:Patl_0231 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein YP_004432381.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; KEGG: pat:Patl_0232 general secretory pathway protein E; SMART: AAA ATPase YP_004432382.1 KEGG: pat:Patl_0233 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain YP_004432383.1 KEGG: pat:Patl_0234 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G YP_004432384.1 TIGRFAM: general secretion pathway protein H; KEGG: pat:Patl_0235 general secretion pathway protein H YP_004432385.1 KEGG: pat:Patl_0236 general secretion pathway protein I; TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J YP_004432386.1 TIGRFAM: general secretion pathway protein J; KEGG: pat:Patl_0237 general secretion pathway protein J YP_004432387.1 KEGG: pat:Patl_0238 general secretion pathway protein K YP_004432388.1 KEGG: pat:Patl_0239 general secretion pathway protein L; TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L YP_004432389.1 PFAM: General secretion pathway M protein; KEGG: pat:Patl_0240 general secretion pathway M protein YP_004432390.1 KEGG: pat:Patl_0241 type II secretion system protein N YP_004432391.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: pat:Patl_0242 fructose-1,6-bisphosphatase YP_004432392.1 KEGG: pat:Patl_0243 UDP-N-acetylmuramate; TIGRFAM: UDP-N-acetylmuramate; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004432393.1 PFAM: S1/P1 nuclease; KEGG: pat:Patl_0244 S1/P1 nuclease YP_004432394.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: pat:Patl_0245 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_004432395.1 KEGG: pat:Patl_0246 NUDIX hydrolase; PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; NADH pyrophosphatase-like YP_004432396.1 PFAM: ferric-uptake regulator; KEGG: pat:Patl_0247 ferric uptake regulator family protein YP_004432397.1 PFAM: CheC domain protein; KEGG: pat:Patl_0248 CheC-like protein YP_004432398.1 PFAM: protein of unknown function UPF0047; KEGG: pat:Patl_0249 hypothetical protein YP_004432399.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat-containing protein; KEGG: pat:Patl_0250 OmpA/MotB YP_004432400.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: pat:Patl_0251 replicative DNA helicase; SMART: AAA ATPase YP_004432401.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: pat:Patl_0252 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein YP_004432402.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_0253 hypothetical protein YP_004432403.1 PFAM: globin; KEGG: pat:Patl_0254 globin YP_004432404.1 KEGG: pat:Patl_0255 hypothetical protein YP_004432405.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; KEGG: pat:Patl_0256 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004432406.1 KEGG: pat:Patl_0257 hypothetical protein YP_004432407.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0258 hypothetical protein YP_004432408.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0259 MscS mechanosensitive ion channel YP_004432409.1 PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; KEGG: pat:Patl_0260 surface antigen (D15) YP_004432410.1 KEGG: pat:Patl_0261 hypothetical protein; manually curated; PFAM: protein of unknown function DUF490 YP_004432411.1 PFAM: MgtE intracellular region; MgtE integral membrane region; KEGG: pat:Patl_0262 MgtE intracellular region YP_004432412.1 PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_0263 hypothetical protein YP_004432413.1 PFAM: transport-associated; KEGG: pat:Patl_0264 transport-associated YP_004432414.1 KEGG: caa:Caka_0198 hypothetical protein YP_004432415.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_0265 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004432416.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: pat:Patl_0266 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain YP_004432417.1 KEGG: pat:Patl_0267 hypothetical protein YP_004432418.1 SMART: AICARFT/IMPCHase bienzyme formylation region; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: pat:Patl_0268 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein YP_004432419.1 PFAM: helix-turn-helix Fis-type; KEGG: pat:Patl_0269 helix-turn-helix, fis-type YP_004432420.1 KEGG: pat:Patl_0270 nifR3 family TIM-barrel protein; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS YP_004432421.1 KEGG: pat:Patl_0271 hypothetical protein YP_004432422.1 PFAM: Thioredoxin domain-containing protein; KEGG: pat:Patl_0272 thioredoxin domain-containing protein YP_004432423.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_0273 LysR family transcriptional regulator YP_004432424.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0274 redoxin YP_004432425.1 KEGG: pat:Patl_0275 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase YP_004432426.1 KEGG: pat:Patl_0276 esterase/lipase/thioesterase family protein YP_004432427.1 PFAM: pentapeptide repeat protein; KEGG: pat:Patl_0277 pentapeptide repeat-containing protein YP_004432428.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pat:Patl_0279 succinylglutamate desuccinylase/aspartoacylase YP_004432429.1 KEGG: pat:Patl_0278 hypothetical protein YP_004432430.1 KEGG: svo:SVI_3267 hypothetical protein YP_004432431.1 PFAM: Protein of unknown function DUF2383; KEGG: pat:Patl_4091 hypothetical protein YP_004432432.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_4090 MscS mechanosensitive ion channel YP_004432433.1 KEGG: pat:Patl_4089 hypothetical protein YP_004432434.1 KEGG: pat:Patl_4088 hypothetical protein; PFAM: diacylglycerol kinase catalytic region; Dual specificity protein phosphatase; SMART: Dual specificity phosphatase, subgroup, catalytic domain; diacylglycerol kinase catalytic region YP_004432435.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_4087 redoxin YP_004432436.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pat:Patl_4086 hemerythrin HHE cation binding region YP_004432437.1 PFAM: Protein of unknown function DUF2177, membrane; KEGG: pat:Patl_4085 hypothetical protein YP_004432438.1 PFAM: formate/nitrite transporter; KEGG: pat:Patl_4084 formate/nitrite transporter YP_004432439.1 PFAM: SNARE associated Golgi protein; KEGG: pat:Patl_4083 hypothetical protein YP_004432440.1 KEGG: pat:Patl_4082 hypothetical protein YP_004432441.1 KEGG: pat:Patl_4081 transporter DMT superfamily protein; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane YP_004432442.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_4080 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004432443.1 KEGG: pat:Patl_4079 DNA helicase II; TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase YP_004432444.1 KEGG: pat:Patl_4078 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_004432445.1 KEGG: pat:Patl_4077 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004432446.1 KEGG: pat:Patl_4076 phage integrase; TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_004432447.1 PFAM: protein of unknown function DUF484; KEGG: pat:Patl_4075 hypothetical protein YP_004432448.1 KEGG: pat:Patl_4074 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_004432449.1 KEGG: pat:Patl_4073 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004432450.1 KEGG: cnb:CNBB5420 hypothetical protein YP_004432451.1 KEGG: pat:Patl_4072 hypothetical protein YP_004432452.1 KEGG: pat:Patl_4071 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_004432453.1 KEGG: pat:Patl_4070 ribonuclease activity regulator protein RraA; TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase YP_004432454.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_4069 biopolymer transport protein ExbD/TolR YP_004432455.1 KEGG: gym:GYMC10_2413 hypothetical protein YP_004432456.1 KEGG: pat:Patl_4068 hypothetical protein YP_004432457.1 KEGG: pat:Patl_4067 flavodoxin FldB; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_004432458.1 KEGG: pat:Patl_4066 hypothetical protein YP_004432459.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: pat:Patl_4065 glycoside hydrolase family protein YP_004432460.1 KEGG: pat:Patl_4064 hypothetical protein YP_004432461.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: pat:Patl_4063 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_004432462.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: pat:Patl_4062 thiol-disulphide oxidoreductase DCC YP_004432463.1 KEGG: pat:Patl_4061 short chain dehydrogenase/reductase family oxidoreductase YP_004432464.1 PFAM: sodium:neurotransmitter symporter; KEGG: pat:Patl_4060 sodium:neurotransmitter symporter YP_004432465.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pat:Patl_4059 dTDP-4-dehydrorhamnose reductase YP_004432466.1 KEGG: pat:Patl_4058 hypothetical protein YP_004432467.1 KEGG: amc:MADE_03631 hypothetical protein YP_004432468.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_4057 MscS mechanosensitive ion channel YP_004432469.1 KEGG: pat:Patl_4056 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004432470.1 KEGG: pat:Patl_4055 acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004432471.1 KEGG: pat:Patl_4054 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease YP_004432472.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pat:Patl_4053 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_004432473.1 KEGG: pat:Patl_4052 hypothetical protein YP_004432474.1 KEGG: pat:Patl_4051 tRNA-dihydrouridine synthase A; TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS YP_004432475.1 KEGG: pat:Patl_4050 hypothetical protein YP_004432477.1 KEGG: pat:Patl_4049 hypothetical protein YP_004432478.1 KEGG: pat:Patl_4048 acetyltransferase YP_004432479.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_4047 AMP-dependent synthetase and ligase YP_004432480.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_4046 short-chain dehydrogenase/reductase SDR YP_004432481.1 KEGG: pat:Patl_4045 hypothetical protein YP_004432482.1 KEGG: pat:Patl_4044 phage shock protein A, PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein YP_004432483.1 KEGG: pat:Patl_4043 hypothetical protein YP_004432484.1 PFAM: protein of unknown function DUF461; KEGG: pat:Patl_4042 hypothetical protein YP_004432485.1 PFAM: Uncharacterised conserved protein UCP029693; KEGG: pat:Patl_4041 hypothetical protein YP_004432486.1 KEGG: pat:Patl_4040 hypothetical protein YP_004432487.1 KEGG: pat:Patl_4039 sulfite reductase (NADPH) flavoprotein, alpha chain; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: FAD-binding domain protein; flavodoxin/nitric oxide synthase; oxidoreductase FAD/NAD(P)-binding domain protein YP_004432488.1 TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; KEGG: pat:Patl_4038 sulfite reductase subunit beta; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein YP_004432489.1 KEGG: pat:Patl_4037 phosphoadenosine phosphosulfate reductase; TIGRFAM: phosphoadenosine phosphosulfate reductase; PFAM: phosphoadenosine phosphosulfate reductase YP_004432490.1 KEGG: pat:Patl_4036 hypothetical protein YP_004432491.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_4035 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004432492.1 manually curated; KEGG: pat:Patl_4034 uracil-DNA glycosylase superfamily protein YP_004432493.1 KEGG: pat:Patl_4033 hypothetical protein YP_004432495.1 KEGG: pat:Patl_4032 stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase YP_004432496.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_4031 DNA-binding transcriptional repressor FabR YP_004432497.1 KEGG: pat:Patl_4030 tRNA (uracil-5-)-methyltransferase; TIGRFAM: tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase YP_004432498.1 KEGG: pat:Patl_4029 CheA signal transduction histidine kinases YP_004432499.1 KEGG: pat:Patl_4028 two component LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver YP_004432500.1 KEGG: pat:Patl_4027 methyltransferase; TIGRFAM: methyltransferase; PFAM: Methyltransferase type 12 YP_004432501.1 KEGG: pat:Patl_4026 methyltransferase; TIGRFAM: methyltransferase; PFAM: methyltransferase YP_004432502.1 TIGRFAM: alanine racemase; KEGG: pat:Patl_4025 alanine racemase; PFAM: alanine racemase domain protein YP_004432503.1 PFAM: aminotransferase class IV; KEGG: pat:Patl_4024 aminotransferase, class IV YP_004432504.1 KEGG: pat:Patl_4023 hypothetical protein YP_004432505.1 PFAM: OsmC family protein; KEGG: pat:Patl_4022 OsmC-like protein YP_004432506.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pat:Patl_4021 hypothetical protein YP_004432507.1 KEGG: pat:Patl_4020 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004432508.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: pat:Patl_4019 peptidase S1 and S6, chymotrypsin/Hap YP_004432509.1 KEGG: pat:Patl_4018 FHA domain-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein YP_004432510.1 PFAM: protein of unknown function DUF833; KEGG: pat:Patl_4017 hypothetical protein YP_004432511.1 KEGG: pat:Patl_4016 aromatic amino acid aminotransferase; PFAM: aminotransferase class I and II YP_004432512.1 KEGG: pat:Patl_4015 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein YP_004432513.1 KEGG: car:cauri_0845 permease of the major facilitator superfamily YP_004432514.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_4014 LysR family transcriptional regulator YP_004432515.1 KEGG: pat:Patl_4013 carbonate dehydratase; PFAM: carbonic anhydrase YP_004432516.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amc:MADE_02853 low affinity sulfate transporter YP_004432517.1 PFAM: polysaccharide biosynthesis protein; KEGG: pat:Patl_4010 hypothetical protein YP_004432518.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_4009 glycosyl transferase, group 1 YP_004432519.1 KEGG: pat:Patl_4008 hypothetical protein YP_004432520.1 PFAM: glycosyl transferase group 1; KEGG: rca:Rcas_0496 glycosyl transferase group 1 YP_004432521.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_4006 glycosyl transferase, group 1 YP_004432522.1 PFAM: sugar transferase; KEGG: pat:Patl_4005 sugar transferase YP_004432523.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: pat:Patl_4004 pilin glycosylation protein YP_004432524.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pat:Patl_4003 DegT/DnrJ/EryC1/StrS aminotransferase YP_004432525.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: pat:Patl_4002 polysaccharide biosynthesis protein CapD YP_004432526.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pat:Patl_4001 polysaccharide export protein YP_004432527.1 TIGRFAM: capsular exopolysaccharide family; KEGG: pat:Patl_4000 protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein YP_004432528.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: pat:Patl_3999 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein YP_004432529.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; KEGG: pat:Patl_3998 biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein YP_004432530.1 KEGG: pat:Patl_3997 Baf family transcriptional activator; TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor YP_004432531.1 KEGG: pat:Patl_3996 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_004432532.1 KEGG: cps:CPS_4645 hypothetical protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_004432533.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_3994 aldo/keto reductase YP_004432534.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_3993 glutaryl-CoA dehydrogenase YP_004432535.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_3992 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004432536.1 TIGRFAM: small GTP-binding protein; PFAM: Ras family protein; KEGG: pat:Patl_3991 small GTP-binding protein; SMART: Ras small GTPase, Rab type; Ras small GTPase, Ras type YP_004432537.1 PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_3990 OmpA/MotB YP_004432538.1 KEGG: pat:Patl_3989 hypothetical protein YP_004432539.1 PFAM: AbgT transporter; KEGG: pat:Patl_3988 AbgT transporter YP_004432540.1 TIGRFAM: ferrochelatase; KEGG: pat:Patl_3987 ferrochelatase; PFAM: ferrochelatase YP_004432541.1 KEGG: pat:Patl_3986 hypothetical protein YP_004432542.1 PFAM: extracellular solute-binding protein family 1; KEGG: pat:Patl_3985 extracellular solute-binding protein YP_004432543.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3984 glutathione S-transferase-like YP_004432544.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3983 glutathione S-transferase-like YP_004432545.1 KEGG: pat:Patl_3982 hypothetical protein YP_004432546.1 KEGG: pat:Patl_1948 hypothetical protein YP_004432547.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: pat:Patl_3981 HflC protein; SMART: band 7 protein YP_004432548.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: pat:Patl_3980 HflK protein; SMART: band 7 protein YP_004432549.1 KEGG: pat:Patl_3979 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related YP_004432550.1 KEGG: pat:Patl_3978 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core YP_004432551.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: pat:Patl_3977 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_004432552.1 KEGG: pat:Patl_3976 DNA mismatch repair protein MutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; MutL dimerisation YP_004432553.1 KEGG: pat:Patl_3975 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; Peptidoglycan-binding lysin domain; SMART: cell wall hydrolase/autolysin; Peptidoglycan-binding LysM YP_004432554.1 PFAM: Uncharacterised protein family UPF0079, ATPase; KEGG: pat:Patl_3974 hypothetical protein YP_004432555.1 manually curated; TIGRFAM: carbohydrate kinase, YjeF related protein; KEGG: pat:Patl_3973 carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031 YP_004432556.1 KEGG: pat:Patl_3972 iron-sulfur cluster binding protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730 YP_004432557.1 KEGG: pat:Patl_3971 hypothetical protein YP_004432558.1 PFAM: methyltransferase small; KEGG: pat:Patl_3970 methyltransferase small YP_004432559.1 PFAM: Male sterility domain; KEGG: pat:Patl_3969 NAD-dependent epimerase/dehydratase YP_004432560.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: pat:Patl_3968 peptidase S9B, dipeptidylpeptidase IV-like YP_004432561.1 PFAM: protein of unknown function DUF1696; KEGG: pat:Patl_3967 hypothetical protein YP_004432562.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pat:Patl_3966 threonine dehydratase YP_004432563.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pat:Patl_3965 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004432564.1 KEGG: pat:Patl_3964 peptidyl-arginine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_004432565.1 KEGG: pat:Patl_3963 hypothetical protein YP_004432566.1 KEGG: pat:Patl_3962 hypothetical protein YP_004432567.1 TIGRFAM: GTP cyclohydrolase II; KEGG: pat:Patl_3961 GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II YP_004432568.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; PAS fold domain protein; KEGG: pat:Patl_3960 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein YP_004432569.1 PFAM: protein of unknown function UPF0061; KEGG: pat:Patl_3959 hypothetical protein YP_004432570.1 PFAM: cytochrome c class I; KEGG: pat:Patl_3958 cytochrome c, class I YP_004432571.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3957 glutathione S-transferase-like YP_004432572.1 PFAM: Methionine repressor MetJ; KEGG: pat:Patl_3956 transcriptional repressor protein MetJ YP_004432573.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: pat:Patl_3955 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_004432574.1 KEGG: pat:Patl_3954 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_004432575.1 KEGG: pat:Patl_3953 hypothetical protein YP_004432576.1 KEGG: pat:Patl_3952 hypothetical protein YP_004432577.1 TIGRFAM: proline iminopeptidase; KEGG: pat:Patl_3951 proline iminopeptidase; PFAM: alpha/beta hydrolase fold YP_004432578.1 KEGG: pat:Patl_3950 D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004432579.1 KEGG: pat:Patl_3949 thioesterase domain-containing protein; TIGRFAM: thioesterase domain protein; PFAM: Thioesterase ; GCN5-related N-acetyltransferase YP_004432580.1 KEGG: sli:Slin_4900 glycosyl hydrolase BNR repeat-containing protein YP_004432581.1 KEGG: aav:Aave_0400 ymc-like protein YP_004432582.1 KEGG: ptm:GSPATT00018737001 hypothetical protein YP_004432583.1 KEGG: aav:Aave_0398 hypothetical protein YP_004432584.1 KEGG: mmp:MMP1514 prephenate dehydrogenase YP_004432585.1 KEGG: tcr:509267.90 ATP-dependent RNA helicase YP_004432586.1 KEGG: shn:Shewana3_2353 hypothetical protein YP_004432587.1 KEGG: spc:Sputcn32_2894 phage integrase family protein YP_004432588.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C0592 AMP-dependent synthetase and ligase YP_004432589.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bxe:Bxe_C0622 Rieske (2Fe-2S) protein YP_004432590.1 KEGG: bxe:Bxe_C0623 hypothetical protein YP_004432591.1 PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C0628 TetR family transcriptional regulator YP_004432592.1 PFAM: FAD dependent oxidoreductase; glucose-inhibited division protein A; KEGG: bxe:Bxe_C0637 dehydrogenase YP_004432593.1 PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C0636 TetR family transcriptional regulator YP_004432594.1 PFAM: cytochrome P450; KEGG: bxe:Bxe_C0631 cytochrome P450 YP_004432595.1 KEGG: bxe:Bxe_C0630 hypothetical protein YP_004432596.1 KEGG: bxe:Bxe_C0629 hypothetical protein YP_004432597.1 KEGG: cak:Caul_1900 carboxymuconolactone decarboxylase YP_004432598.1 PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1515 inner membrane efflux protein YP_004432599.1 PFAM: cytochrome P450; KEGG: bxe:Bxe_C0599 cytochrome P450 YP_004432600.1 PFAM: amidohydrolase 2; KEGG: bxe:Bxe_C0606 hypothetical protein YP_004432601.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0605 acyl-CoA dehydrogenase YP_004432602.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0604 acyl-CoA dehydrogenase YP_004432603.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0603 enoyl-CoA hydratase YP_004432604.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0602 acyl-CoA dehydrogenase YP_004432605.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B0859 transcriptional regulator, LysR family YP_004432606.1 KEGG: cti:RALTA_B0860 2-oxoacid ferredoxin oxidoreductase YP_004432607.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: tmz:Tmz1t_0421 electron transfer flavoprotein alpha/beta-subunit YP_004432608.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: tmz:Tmz1t_2267 electron transfer flavoprotein alpha subunit YP_004432609.1 KEGG: pde:Pden_3508 protein of unknown function DUF894, DitE; manually curated; PFAM: protein of unknown function DUF894 DitE YP_004432610.1 PFAM: UspA domain-containing protein; Hemerythrin HHE cation binding domain protein; KEGG: pna:Pnap_2455 hemerythrin HHE cation binding region YP_004432611.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_C0640 aromatic ring-cleavage dioxygenase YP_004432612.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cak:Caul_1920 short-chain dehydrogenase/reductase SDR YP_004432613.1 KEGG: bxe:Bxe_C0638 ferredoxin YP_004432614.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bxe:Bxe_C0607 IclR family transcriptional regulator YP_004432615.1 KEGG: bxe:Bxe_C0581 hypothetical protein YP_004432616.1 PFAM: protein of unknown function DUF35; KEGG: bxe:Bxe_C0582 hypothetical protein YP_004432617.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0583 short-chain dehydrogenase/reductase YP_004432618.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_C0585 hydrolase YP_004432619.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: bxe:Bxe_C0586 Rieske-type ring hydroxylating dioxygenase alpha subunit YP_004432620.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: bxe:Bxe_C0587 Rieske-type ring hydroxylating dioxygenase beta subunit YP_004432621.1 PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_C0615 major facilitator transporter YP_004432622.1 PFAM: ferredoxin; KEGG: cse:Cseg_0160 ferredoxin YP_004432623.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bxe:Bxe_C0579 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004432624.1 KEGG: bxe:Bxe_C0590 hypothetical protein YP_004432625.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0591 short-chain dehydrogenase/reductase YP_004432626.1 PFAM: amidohydrolase 2; KEGG: bxe:Bxe_C0594 hypothetical protein YP_004432627.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_C0595 hydrolase YP_004432628.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: bxe:Bxe_C0596 3-hydroxybutyryl-CoA dehydrogenase YP_004432629.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: bxe:Bxe_C0597 thiolase; PFAM: Thiolase-like YP_004432630.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0610 short-chain dehydrogenase/reductase YP_004432631.1 PFAM: protein of unknown function DUF1302; KEGG: gme:Gmet_2248 hypothetical protein YP_004432632.1 KEGG: psa:PST_0616 hypothetical protein YP_004432633.1 KEGG: geo:Geob_2443 glycosyl hydrolase YP_004432634.1 KEGG: geo:Geob_2442 transporter YP_004432635.1 KEGG: bxe:Bxe_C0644 hypothetical protein YP_004432636.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_C0643 short chain enoyl-CoA hydratase YP_004432637.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0642 short-chain dehydrogenase/reductase YP_004432638.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: cak:Caul_1915 alcohol dehydrogenase YP_004432639.1 TIGRFAM: GTP cyclohydrolase I; KEGG: pfl:PFL_0949 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004432640.1 PFAM: adenylate cyclase; KEGG: psa:PST_0271 adenylate cyclase YP_004432641.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: wri:WRi_009430 reverse transcriptase YP_004432642.1 PFAM: TnsA endonuclease; KEGG: abm:ABSDF3566 transposon Tn7-like transposition protein YP_004432643.1 KEGG: sbl:Sbal_4359 integrase catalytic subunit YP_004432644.1 PFAM: transposase IS3/IS911 family protein; KEGG: psp:PSPPH_3740 ISPsy24, transposase orfA YP_004432645.1 PFAM: Integrase catalytic region; KEGG: pap:PSPA7_4229 hypothetical protein YP_004432646.1 KEGG: neu:NE2106 hypothetical protein YP_004432647.1 KEGG: amc:MADE_00943 hypothetical protein YP_004432648.1 KEGG: dsa:Desal_3488 kap P-loop domain protein YP_004432649.1 KEGG: sde:Sde_1963 chromosome segregation ATPases-like YP_004432650.1 KEGG: glo:Glov_2850 metal dependent phosphohydrolase YP_004432651.1 KEGG: tmz:Tmz1t_0253 integrase family protein; manually curated; PFAM: integrase family protein YP_004432652.1 KEGG: dar:Daro_1323 hypothetical protein YP_004432653.1 KEGG: spc:Sputcn32_2899 helix-turn-helix domain-containing protein; manually curated; SMART: helix-turn-helix domain protein YP_004432654.1 PFAM: protein of unknown function DUF839; KEGG: pat:Patl_0331 hypothetical protein YP_004432655.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: pat:Patl_0332 N-acylglucosamine 2-epimerase YP_004432656.1 KEGG: pat:Patl_0333 hypothetical protein YP_004432657.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0334 TonB-dependent receptor YP_004432658.1 KEGG: pat:Patl_0335 SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004432659.1 KEGG: pat:Patl_0336 hydroxypyruvate reductase; PFAM: MOFRL domain protein YP_004432660.1 PFAM: ROK family protein; KEGG: pat:Patl_0337 ROK domain-containing protein YP_004432661.1 PFAM: cyclic-AMP phosphodiesterase class-II; KEGG: pat:Patl_0338 cyclic-AMP phosphodiesterase YP_004432662.1 PFAM: HemY domain protein; KEGG: pat:Patl_0339 HemY-like YP_004432663.1 KEGG: pat:Patl_0340 protein of unknown function DUF513, HemX; PFAM: protein of unknown function DUF513 hemX YP_004432664.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: pat:Patl_0341 uroporphyrinogen III synthase HEM4 YP_004432665.1 KEGG: pat:Patl_0342 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_004432666.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0343 GCN5-related N-acetyltransferase YP_004432667.1 KEGG: pat:Patl_0344 YHS domain-containing protein YP_004432668.1 KEGG: pat:Patl_0345 carboxylesterase; PFAM: phospholipase/Carboxylesterase YP_004432669.1 KEGG: pat:Patl_0346 frataxin-like; TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein YP_004432670.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: pat:Patl_0347 guanylate kinase; PFAM: guanylate kinase YP_004432671.1 KEGG: pat:Patl_0348 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6 YP_004432672.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: pat:Patl_0349 metal dependent phosphohydrolase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein YP_004432673.1 KEGG: pat:Patl_0350 endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP YP_004432674.1 KEGG: pat:Patl_0351 tRNA guanosine-2'-O-methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_004432675.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0352 redoxin YP_004432676.1 TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: pat:Patl_0353 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase domain protein YP_004432677.1 PFAM: protein of unknown function DUF548; KEGG: pat:Patl_0354 hypothetical protein YP_004432678.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_0355 glyoxalase/bleomycin resistance protein/dioxygenase YP_004432679.1 PFAM: Redoxin domain protein; KEGG: pat:Patl_0356 redoxin YP_004432680.1 KEGG: aca:ACP_1075 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_004432681.1 PFAM: ABC-2 type transporter; KEGG: sus:Acid_1274 ABC-2 type transporter YP_004432682.1 KEGG: smt:Smal_0257 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004432683.1 KEGG: sde:Sde_3820 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004432684.1 KEGG: pat:Patl_0371 hypothetical protein YP_004432685.1 PFAM: peptidase M48 Ste24p; KEGG: pat:Patl_0373 heat shock protein HtpX YP_004432686.1 PFAM: cyclase family protein; KEGG: pat:Patl_0374 cyclase YP_004432687.1 PFAM: HI0933 family protein; KEGG: pat:Patl_0375 HI0933-like protein YP_004432689.1 KEGG: sde:Sde_0573 alpha-amylase G-6 precursor; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004432690.1 KEGG: pat:Patl_0384 hypothetical protein YP_004432691.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_0385 thioesterase superfamily protein YP_004432692.1 KEGG: pat:Patl_0386 porin family outer membrane protein YP_004432693.1 KEGG: pat:Patl_0387 hypothetical protein YP_004432694.1 KEGG: pat:Patl_0388 hypothetical protein YP_004432695.1 PFAM: fatty acid hydroxylase; KEGG: pat:Patl_0389 sterol desaturase YP_004432696.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pat:Patl_0390 CDP-alcohol phosphatidyltransferase YP_004432697.1 KEGG: pat:Patl_0391 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004432698.1 KEGG: pat:Patl_0392 ABC transporter, permease protein YP_004432699.1 PFAM: extracellular solute-binding protein family 1; KEGG: pat:Patl_0393 ABC transporter solute-binding protein YP_004432700.1 PFAM: protein of unknown function DUF547; KEGG: pat:Patl_0394 hypothetical protein YP_004432701.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SNARE associated Golgi protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: pat:Patl_0395 pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004432702.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_0396 TonB-dependent receptor YP_004432703.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_0397 major facilitator transporter YP_004432704.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; KEGG: pat:Patl_0398 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein YP_004432706.1 KEGG: cfe:CF0790 glutamate symporter YP_004432707.1 KEGG: pat:Patl_0401 hypothetical protein YP_004432708.1 PFAM: transcriptional regulator domain-containing protein; KEGG: pat:Patl_0402 transcriptional regulator, CadC YP_004432709.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_0403 acriflavin resistance protein YP_004432710.1 KEGG: pat:Patl_0404 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004432711.1 PFAM: peptidase M28; KEGG: pat:Patl_0405 peptidase M28 YP_004432712.1 KEGG: pat:Patl_0406 hypothetical protein YP_004432713.1 PFAM: protein of unknown function DUF167; KEGG: pat:Patl_0407 hypothetical protein YP_004432714.1 KEGG: pat:Patl_0408 hypothetical protein YP_004432715.1 KEGG: pat:Patl_0409 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004432716.1 PFAM: tryptophan 23-dioxygenase; KEGG: pat:Patl_0410 tryptophan 2 3-dioxygenase (vermilion)-like YP_004432717.1 PFAM: aminotransferase class V; KEGG: pat:Patl_0411 aminotransferase, class V YP_004432718.1 KEGG: pat:Patl_0412 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004432719.1 KEGG: pat:Patl_0413 hypothetical protein YP_004432720.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pat:Patl_0415 oxidoreductase FAD/NAD(P)-binding YP_004432721.1 KEGG: pat:Patl_0416 hypothetical protein YP_004432722.1 KEGG: pat:Patl_0417 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Sirohaem synthase, dimerisation domain YP_004432723.1 KEGG: pat:Patl_0418 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004432724.1 KEGG: pat:Patl_0419 TPR repeat-containing protein; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein YP_004432725.1 KEGG: pat:Patl_0420 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein YP_004432726.1 PFAM: Ion transport protein; KEGG: pat:Patl_0421 ion transport protein YP_004432727.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pat:Patl_0425 iron-containing alcohol dehydrogenase YP_004432728.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_0426 thioesterase superfamily protein YP_004432729.1 KEGG: pat:Patl_0427 hydroxymethylglutaryl-CoA reductase (NADPH); PFAM: hydroxymethylglutaryl-coenzyme A reductase YP_004432730.1 KEGG: pat:Patl_0428 4Fe-4S ferredoxin, iron-sulfur binding YP_004432731.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_0429 FAD dependent oxidoreductase YP_004432732.1 KEGG: pat:Patl_0430 TolC family type I secretion outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_004432733.1 KEGG: pat:Patl_0431 nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase YP_004432734.1 PFAM: protein of unknown function DUF1249; KEGG: pat:Patl_0432 hypothetical protein YP_004432735.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: pat:Patl_0433 metallophosphoesterase YP_004432736.1 PFAM: protein of unknown function UPF0227; KEGG: pat:Patl_0434 hypothetical protein YP_004432737.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV, B subunit; KEGG: pat:Patl_0435 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein YP_004432738.1 PFAM: Protein of unknown function DUF2279, periplasmic lipoprotein; KEGG: pat:Patl_0436 hypothetical protein YP_004432739.1 PFAM: small multidrug resistance protein; KEGG: svo:SVI_1721 quaternary ammonium compound-resistance protein QacE YP_004432740.1 KEGG: pat:Patl_0438 hypothetical protein YP_004432741.1 KEGG: pat:Patl_0439 hypothetical protein YP_004432742.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: pat:Patl_0440 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_004432743.1 KEGG: pat:Patl_0441 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW-like domain-containing protein; Elongation factor P/YeiP protein YP_004432744.1 TIGRFAM: lysyl-tRNA synthetase-related protein GenX; KEGG: pat:Patl_0442 lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N) YP_004432745.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_0443 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432746.1 KEGG: pat:Patl_0444 hypothetical protein YP_004432747.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0445 GCN5-related N-acetyltransferase YP_004432748.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pat:Patl_0446 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_004432749.1 PFAM: methyltransferase small; KEGG: pat:Patl_0447 rRNA (guanine-N(2)-)-methyltransferase YP_004432750.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pat:Patl_0448 2OG-Fe(II) oxygenase YP_004432751.1 PFAM: BolA family protein; KEGG: pat:Patl_0449 BolA-like protein YP_004432752.1 PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_0450 hypothetical protein YP_004432753.1 KEGG: pat:Patl_0451 trans-2-enoyl-CoA reductase; PFAM: short-chain alcohol dehydrogenase YP_004432754.1 KEGG: pat:Patl_0452 Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A YP_004432755.1 KEGG: pat:Patl_0453 Na(+)-translocating NADH-quinone reductase subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2 and RnfD family protein YP_004432756.1 KEGG: pat:Patl_0454 Na(+)-translocating NADH-quinone reductase subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein YP_004432757.1 KEGG: pat:Patl_0455 Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit YP_004432758.1 KEGG: pat:Patl_0456 Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit YP_004432759.1 KEGG: pat:Patl_0457 Na(+)-translocating NADH-quinone reductase subunit F; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein YP_004432760.1 PFAM: ApbE family lipoprotein; multicopper oxidase type 3; KEGG: pat:Patl_0458 ApbE-like lipoprotein YP_004432761.1 PFAM: protein of unknown function DUF539; KEGG: pat:Patl_0459 hypothetical protein YP_004432762.1 KEGG: pat:Patl_0460 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein YP_004432763.1 PFAM: protein of unknown function DUF1653; KEGG: pat:Patl_0461 hypothetical protein YP_004432764.1 KEGG: pat:Patl_0462 beta-lactamase-like YP_004432765.1 PFAM: Amidohydrolase 3; KEGG: pat:Patl_0463 amidohydrolase 3 YP_004432766.1 KEGG: pat:Patl_0464 elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_004432767.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_0465 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432768.1 PFAM: amidohydrolase; peptidase S9B dipeptidylpeptidase IV domain protein; WD40-like beta Propeller containing protein; KEGG: pat:Patl_0466 amidohydrolase YP_004432769.1 KEGG: pat:Patl_0467 GAF sensor protein; PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: AAA ATPase; GAF domain protein YP_004432770.1 KEGG: pat:Patl_0468 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10 YP_004432771.1 KEGG: pat:Patl_0469 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3 YP_004432772.1 PFAM: ribosomal protein L4/L1e; KEGG: pat:Patl_0470 50S ribosomal protein L4 YP_004432773.1 PFAM: Ribosomal protein L25/L23; KEGG: pat:Patl_0471 50S ribosomal protein L23 YP_004432774.1 KEGG: pat:Patl_0472 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2 YP_004432775.1 KEGG: pat:Patl_0473 ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15 YP_004432776.1 KEGG: pat:Patl_0474 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17 YP_004432777.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; KEGG: pat:Patl_0475 30S ribosomal protein S3; SMART: KH domain protein YP_004432778.1 KEGG: pat:Patl_0476 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004432779.1 KEGG: pat:Patl_0477 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29 YP_004432780.1 KEGG: pat:Patl_0478 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17 YP_004432781.1 PFAM: peptidase S41; KEGG: pat:Patl_0479 peptidase S41 YP_004432782.1 KEGG: svo:SVI_1958 hypothetical protein; TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11 YP_004432783.1 KEGG: svo:SVI_0544 hypothetical protein YP_004432784.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_0480 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432785.1 KEGG: pat:Patl_0481 catalase; PFAM: Catalase related subgroup; Catalase domain protein YP_004432786.1 PFAM: Paraquat-inducible protein A; KEGG: pat:Patl_0482 paraquat-inducible protein A YP_004432787.1 KEGG: pat:Patl_0483 hypothetical protein YP_004432788.1 KEGG: pat:Patl_0484 hypothetical protein YP_004432789.1 KEGG: pat:Patl_0485 hypothetical protein YP_004432790.1 KEGG: pat:Patl_0486 formyltetrahydrofolate deformylase; TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein YP_004432791.1 KEGG: pat:Patl_0487 2'-5' RNA ligase; TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX YP_004432792.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: pat:Patl_0488 ATP-dependent helicase HrpB; SMART: DEAD-like helicase ; helicase domain protein YP_004432793.1 TIGRFAM: penicillin-binding protein 1B; KEGG: pat:Patl_0489 penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_004432794.1 KEGG: pat:Patl_0490 hypothetical protein YP_004432795.1 PFAM: nitrogen regulatory protein P-II; KEGG: pat:Patl_0491 nitrogen regulatory protein P-II YP_004432796.1 KEGG: pat:Patl_0492 Rh-like protein/ammonium transporter; TIGRFAM: ammonium transporter, marine subtype; PFAM: ammonium transporter YP_004432797.1 KEGG: amc:MADE_00426 two-component system sensor kinase/response regulator fusion protein; PFAM: response regulator receiver; SMART: response regulator receiver; Helix-turn-helix, AraC domain YP_004432798.1 KEGG: dev:DhcVS_105 histidine kinase CheY-like domain protein; PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; SMART: ATP-binding region ATPase domain protein YP_004432799.1 KEGG: hch:HCH_06822 heme utilization/adhesion protein YP_004432800.1 KEGG: hch:HCH_06821 hypothetical protein YP_004432801.1 KEGG: pat:Patl_0493 Dyp-type peroxidase family protein; TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase YP_004432802.1 KEGG: pat:Patl_0494 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_004432803.1 KEGG: pat:Patl_0495 glutamate-1-semialdehyde aminotransferase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III YP_004432804.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: pat:Patl_0496 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_004432805.1 PFAM: shikimate kinase; KEGG: svo:SVI_0690 hypothetical protein YP_004432806.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pat:Patl_0498 lipolytic enzyme, G-D-S-L YP_004432807.1 KEGG: pat:Patl_0499 peptidase M12A, astacin; PFAM: peptidase M10A and M12B matrixin and adamalysin; SMART: peptidase metallopeptidase YP_004432808.1 KEGG: pat:Patl_0500 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004432809.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_0501 lysine exporter protein LysE/YggA YP_004432810.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pat:Patl_0502 peptidylprolyl isomerase, FKBP-type YP_004432811.1 KEGG: pat:Patl_0503 hypothetical protein YP_004432812.1 KEGG: pat:Patl_0504 hypothetical protein YP_004432813.1 KEGG: pat:Patl_0505 PPE repeat-containing protein YP_004432814.1 KEGG: pat:Patl_0506 hypothetical protein YP_004432815.1 KEGG: pat:Patl_0507 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004432816.1 PFAM: NHL repeat containing protein; KEGG: pat:Patl_0508 L-sorbosone dehydrogenase (SNDH) YP_004432817.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; KEGG: pat:Patl_0509 DNA topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_004432818.1 PFAM: Carboxylesterase type B; KEGG: pat:Patl_0510 carboxylesterase YP_004432819.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: pat:Patl_0511 succinylglutamate desuccinylase/aspartoacylase YP_004432820.1 KEGG: pat:Patl_0512 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004432821.1 PFAM: Peptidase M23; Opacity-associated protein A domain protein; KEGG: pat:Patl_0513 peptidase M23B YP_004432822.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: pat:Patl_0514 tyrosyl-tRNA synthetase; SMART: RNA-binding S4 domain protein YP_004432823.1 KEGG: pat:Patl_0515 hypothetical protein YP_004432824.1 KEGG: pat:Patl_0516 hypothetical protein YP_004432825.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: pat:Patl_0517 cobalamin biosynthesis protein CbiB YP_004432826.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: pat:Patl_0518 adenosylhomocysteine nucleosidase; PFAM: purine or other phosphorylase family 1 YP_004432827.1 KEGG: pat:Patl_0519 hypothetical protein YP_004432828.1 KEGG: pat:Patl_0521 acetate--CoA ligase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase YP_004432829.1 KEGG: pat:Patl_0522 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_004432830.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; Na+/solute symporter; response regulator receiver; KEGG: pat:Patl_0523 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004432831.1 TIGRFAM: solute symporter protein; KEGG: pat:Patl_0524 hypothetical protein YP_004432832.1 KEGG: pat:Patl_0525 Na+/solute symporter; TIGRFAM: sodium symporter protein; PFAM: Na+/solute symporter YP_004432833.1 PFAM: FIST C domain; domain of unknown function DUF1745; KEGG: pat:Patl_0526 hypothetical protein YP_004432834.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_0527 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004432835.1 KEGG: pat:Patl_0528 signal-transduction protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein YP_004432836.1 KEGG: pat:Patl_0529 exonuclease, RNase T and DNA polymerase III; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_004432837.1 KEGG: pat:Patl_0530 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_004432838.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pat:Patl_0531 2OG-Fe(II) oxygenase YP_004432839.1 KEGG: pat:Patl_0532 nucleoside transporter; TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter domain protein; Na+ dependent nucleoside transporter; nucleoside recognition domain protein YP_004432840.1 TIGRFAM: uridine kinase; KEGG: pat:Patl_0533 uridine kinase YP_004432841.1 manually curated; KEGG: pat:Patl_0534 hypothetical protein YP_004432842.1 KEGG: pat:Patl_0535 hypothetical protein YP_004432843.1 KEGG: ilo:IL0583 OmpA family Oar-like outer membrane protein protein YP_004432844.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pat:Patl_0537 endonuclease/exonuclease/phosphatase YP_004432845.1 KEGG: pat:Patl_0538 arginine repressor; TIGRFAM: arginine repressor; PFAM: Arginine repressor-like YP_004432846.1 KEGG: pat:Patl_0539 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase YP_004432847.1 KEGG: pat:Patl_0540 hypothetical protein YP_004432848.1 KEGG: pat:Patl_0541 hypothetical protein YP_004432849.1 KEGG: pat:Patl_0542 hypothetical protein YP_004432850.1 KEGG: pat:Patl_0543 hypothetical protein YP_004432851.1 KEGG: pat:Patl_0544 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_004432852.1 KEGG: pat:Patl_0545 hypothetical protein YP_004432853.1 PFAM: Cl- channel voltage-gated family protein; KEGG: pat:Patl_0546 Cl-channel, voltage gated YP_004432854.1 PFAM: Uncharacterised protein family UPF0093; KEGG: pat:Patl_0547 hypothetical protein YP_004432855.1 KEGG: amc:MADE_01597 hypothetical protein YP_004432856.1 TIGRFAM: GTP cyclohydrolase I; KEGG: pat:Patl_0548 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004432857.1 PFAM: purine or other phosphorylase family 1; KEGG: pat:Patl_0549 purine phosphorylases family protein 1 YP_004432858.1 PFAM: protein of unknown function DUF28; KEGG: pat:Patl_0550 hypothetical protein YP_004432859.1 PFAM: AFG1-family ATPase; KEGG: pat:Patl_0551 AFG1-like ATPase YP_004432860.1 PFAM: protein of unknown function DUF1043; KEGG: pat:Patl_0552 hypothetical protein YP_004432861.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: pat:Patl_0553 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_004432862.1 KEGG: pat:Patl_0554 PDZ/DHR/GLGF; PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein YP_004432863.1 KEGG: pat:Patl_0555 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_004432864.1 PFAM: BolA family protein; KEGG: pat:Patl_0556 BolA-like protein YP_004432865.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pat:Patl_0557 anti-sigma-factor antagonist YP_004432866.1 PFAM: toluene tolerance family protein; KEGG: pat:Patl_0558 toluene tolerance YP_004432867.1 PFAM: Mammalian cell entry related domain protein; KEGG: pat:Patl_0559 hypothetical protein YP_004432868.1 PFAM: protein of unknown function DUF140; KEGG: pat:Patl_0560 hypothetical protein YP_004432869.1 KEGG: pat:Patl_0561 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004432870.1 KEGG: pat:Patl_0562 CaCA family Na(+)/Ca(+) antiporter; TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region YP_004432871.1 SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: pat:Patl_0563 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein YP_004432872.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pat:Patl_0564 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_004432873.1 PFAM: protein of unknown function DUF1239; KEGG: pat:Patl_0565 hypothetical protein YP_004432874.1 KEGG: pat:Patl_0566 OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein YP_004432875.1 KEGG: pat:Patl_0567 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004432876.1 KEGG: pat:Patl_0568 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor YP_004432877.1 KEGG: pat:Patl_0569 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_004432878.1 KEGG: pat:Patl_0570 PTS IIA-like nitrogen-regulatory protein PtsN; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2 YP_004432879.1 KEGG: pat:Patl_0571 hypothetical protein YP_004432880.1 KEGG: pat:Patl_0572 HPr family phosphocarrier protein; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr YP_004432881.1 manually curated; KEGG: pat:Patl_0579 helix-turn-helix, type 11 YP_004432882.1 PFAM: Lipocalin family protein; KEGG: pat:Patl_0580 lipocalin-like YP_004432883.1 KEGG: pat:Patl_0581 hypothetical protein YP_004432884.1 KEGG: pat:Patl_0582 alkylphosphonate utilization operon protein PhnA; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein YP_004432885.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pat:Patl_0583 phospholipid/glycerol acyltransferase YP_004432886.1 TIGRFAM: dihydroorotase, homodimeric type; KEGG: pat:Patl_0584 dihydroorotase; PFAM: amidohydrolase 2 YP_004432887.1 SMART: extracellular solute-binding protein family 3; KEGG: pat:Patl_0585 amino acid ABC transporter periplasmic protein YP_004432888.1 KEGG: pat:Patl_0586 amino acid ABC transporter periplasmic protein YP_004432889.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_0587 enoyl-CoA hydratase YP_004432890.1 KEGG: pat:Patl_0588 ATP-dependent RNA helicase DbpA; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004432891.1 KEGG: pat:Patl_0589 hypothetical protein YP_004432892.1 KEGG: swd:Swoo_4274 hypothetical protein YP_004432893.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: pat:Patl_0590 dimethylmenaquinone methyltransferase YP_004432894.1 KEGG: pat:Patl_0591 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_004432895.1 KEGG: pat:Patl_0592 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein YP_004432896.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; KEGG: pat:Patl_0593 NusG antitermination factor; SMART: NGN domain-containing protein; KOW domain protein YP_004432897.1 TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; KEGG: pat:Patl_0594 ribosomal protein L11; SMART: ribosomal protein L11 YP_004432898.1 KEGG: pat:Patl_0595 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1 YP_004432899.1 PFAM: ribosomal protein L10; KEGG: pat:Patl_0596 50S ribosomal protein L10 YP_004432900.1 KEGG: pat:Patl_0597 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 YP_004432901.1 KEGG: pat:Patl_0598 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7 YP_004432902.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; KEGG: pat:Patl_0599 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein YP_004432903.1 KEGG: pat:Patl_0600 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23 YP_004432904.1 KEGG: pat:Patl_0601 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7 YP_004432905.1 KEGG: pat:Patl_0602 translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein YP_004432906.1 KEGG: pat:Patl_3996 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein YP_004432907.1 manually curated; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: pat:Patl_0604 methyl-accepting chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004432908.1 PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; KEGG: pat:Patl_0605 hypothetical protein YP_004432909.1 KEGG: pat:Patl_0606 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase, C-terminal region YP_004432910.1 KEGG: pat:Patl_0607 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein YP_004432911.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pat:Patl_0608 sulphate transporter YP_004432912.1 KEGG: pat:Patl_0609 hypothetical protein YP_004432913.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: pat:Patl_0610 sodium/hydrogen exchanger YP_004432914.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0611 alpha/beta hydrolase fold YP_004432915.1 TIGRFAM: yecA family protein; KEGG: pat:Patl_0613 YecA family protein YP_004432916.1 KEGG: pat:Patl_0614 hypothetical protein YP_004432917.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_0615 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432918.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pat:Patl_0616 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes YP_004432919.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: pat:Patl_0617 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein YP_004432920.1 KEGG: pat:Patl_0618 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004432921.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_0619 acriflavin resistance protein YP_004432922.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_0620 glutathione S-transferase-like YP_004432923.1 PFAM: protein of unknown function DUF1244; KEGG: pat:Patl_0621 hypothetical protein YP_004432924.1 KEGG: pat:Patl_0622 hypothetical protein YP_004432925.1 PFAM: protein of unknown function DUF413; KEGG: pat:Patl_0623 hypothetical protein YP_004432926.1 KEGG: pat:Patl_0624 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein YP_004432927.1 KEGG: pat:Patl_0625 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein YP_004432928.1 KEGG: pat:Patl_0626 thymidine kinase; PFAM: thymidine kinase YP_004432929.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_0627 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004432930.1 KEGG: pat:Patl_0628 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004432931.1 KEGG: pat:Patl_0629 benzoate transporter; TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein YP_004432932.1 PFAM: Bile acid:sodium symporter; KEGG: pat:Patl_0630 bile acid:sodium symporter YP_004432933.1 KEGG: pat:Patl_0631 hypothetical protein YP_004432934.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0632 short chain dehydrogenase YP_004432935.1 PFAM: Phosphoglycerate mutase; KEGG: pat:Patl_0633 phosphoglycerate mutase YP_004432936.1 PFAM: aminoglycoside phosphotransferase; KEGG: pat:Patl_0634 aminoglycoside phosphotransferase YP_004432937.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0635 acyl-CoA dehydrogenase-like YP_004432938.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_0636 LysR family transcriptional regulator YP_004432939.1 PFAM: ammonium transporter; KEGG: pat:Patl_0637 Rh-like protein/ammonium transporter YP_004432940.1 KEGG: pat:Patl_0638 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Ig family protein; SMART: Dystroglycan-type cadherin domain protein YP_004432941.1 KEGG: pat:Patl_0639 hypothetical protein YP_004432942.1 KEGG: pat:Patl_0645 magnesium transporter; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; CBS domain containing protein; MgtE integral membrane region YP_004432943.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_0646 hypothetical protein YP_004432944.1 KEGG: pat:Patl_0647 galactokinase; TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein YP_004432945.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: pat:Patl_0648 galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein YP_004432946.1 KEGG: pat:Patl_0649 aldehyde dehydrogenase; TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_004432947.1 TIGRFAM: arginine N-succinyltransferase; arginine/ornithine succinyltransferase subunit; KEGG: pat:Patl_0650 arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit YP_004432948.1 TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; KEGG: pat:Patl_0651 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; PFAM: aminotransferase class-III YP_004432949.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pat:Patl_0652 signal transduction protein YP_004432950.1 KEGG: pat:Patl_0653 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_004432951.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pat:Patl_0654 electron transfer flavoprotein beta-subunit YP_004432952.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: pat:Patl_0655 electron transfer flavoprotein, alpha subunit YP_004432953.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0656 acyl-CoA dehydrogenase-like YP_004432954.1 KEGG: pat:Patl_0657 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004432955.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: pat:Patl_0658 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_004432956.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: pat:Patl_0659 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_004432957.1 PFAM: Conserved hypothetical protein CHP02001; KEGG: pat:Patl_0660 hypothetical protein YP_004432958.1 KEGG: pat:Patl_0661 hypothetical protein YP_004432959.1 KEGG: pat:Patl_0662 hypothetical protein YP_004432960.1 manually curated; TIGRFAM: DNA adenine methylase; KEGG: pat:Patl_0663 DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase YP_004432961.1 KEGG: pat:Patl_0664 hypothetical protein YP_004432962.1 TIGRFAM: 3-dehydroquinate synthase; KEGG: pat:Patl_0665 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase YP_004432963.1 KEGG: pat:Patl_0666 shikimate kinase I; PFAM: shikimate kinase YP_004432964.1 KEGG: pat:Patl_0667 type IV pilus secretin PilQ; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain YP_004432965.1 PFAM: Pilus assembly protein PilP; KEGG: pat:Patl_0668 pilus assembly protein, PilQ YP_004432966.1 KEGG: pat:Patl_0669 pilus assembly protein, PilO YP_004432967.1 PFAM: Fimbrial assembly family protein; KEGG: pat:Patl_0670 fimbrial assembly YP_004432968.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pat:Patl_0671 type IV pilus assembly protein PilM YP_004432969.1 PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; manually curated; KEGG: pat:Patl_0723 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family YP_004432970.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: pat:Patl_0724 malate dehydrogenase YP_004432971.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: pat:Patl_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein YP_004432972.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0736 TetR family transcriptional regulator YP_004432973.1 KEGG: pat:Patl_0737 Zn-dependent hydrolase of the beta-lactamase fold YP_004432974.1 KEGG: pat:Patl_0738 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_004432975.1 KEGG: pat:Patl_0739 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004432976.1 KEGG: pat:Patl_0740 hypothetical protein YP_004432977.1 KEGG: pat:Patl_0741 thioredoxin family protein YP_004432978.1 TIGRFAM: peroxiredoxin, OsmC subfamily; KEGG: pat:Patl_0742 OsmC-like protein; PFAM: OsmC family protein YP_004432979.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0743 TetR family transcriptional regulator YP_004432980.1 PFAM: secretion protein HlyD family protein; KEGG: pat:Patl_0744 secretion protein HlyD YP_004432981.1 KEGG: pat:Patl_0745 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1 YP_004432982.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: pat:Patl_0746 peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_004432983.1 KEGG: pat:Patl_0747 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004432984.1 PFAM: Saccharopine dehydrogenase; KEGG: pat:Patl_0748 saccharopine dehydrogenase YP_004432985.1 PFAM: Protein of unknown function DUF2061, membrane; KEGG: pat:Patl_0749 membrane protein YP_004432986.1 KEGG: pat:Patl_0750 NAD metabolism ATPase/kinase YP_004432987.1 KEGG: pat:Patl_0751 nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004432988.1 PFAM: Kelch repeat type 1-containing protein; KEGG: pat:Patl_0752 kelch repeat-containing protein YP_004432989.1 KEGG: pat:Patl_0753 D-cysteine desulfhydrase, PLP-dependent enzyme YP_004432990.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_0754 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004432991.1 KEGG: pat:Patl_0755 ZIP zinc transporter family protein YP_004432992.1 KEGG: pat:Patl_0756 hypothetical protein YP_004432993.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_0757 MscS mechanosensitive ion channel YP_004432994.1 KEGG: pat:Patl_0758 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase YP_004432995.1 KEGG: pat:Patl_0759 oxalate/formate antiporter YP_004432996.1 KEGG: pat:Patl_0760 hypothetical protein YP_004432997.1 KEGG: pat:Patl_0761 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_004432998.1 PFAM: MscS Mechanosensitive ion channel; KEGG: amc:MADE_01983 MscS mechanosensitive ion channel ei VT8 YP_004432999.1 KEGG: pat:Patl_0762 transmembrane protein YP_004433000.1 KEGG: pat:Patl_0763 hypothetical protein YP_004433001.1 KEGG: pat:Patl_0766 catalase; PFAM: Catalase related subgroup; Catalase domain protein YP_004433002.1 PFAM: MscS Mechanosensitive ion channel; KEGG: nwa:Nwat_0093 mechanosensitive ion channel protein MscS YP_004433003.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0767 TonB-dependent receptor YP_004433004.1 PFAM: sulfotransferase; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_0768 sulfotransferase YP_004433005.1 KEGG: alv:Alvin_2092 hypothetical protein YP_004433006.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0769 short-chain dehydrogenase/reductase SDR YP_004433007.1 KEGG: pat:Patl_0770 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7 YP_004433008.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pat:Patl_0771 tripartite ATP-independent periplasmic transporter DctQ YP_004433009.1 KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004433010.1 KEGG: pat:Patl_0773 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004433011.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_0774 hypothetical protein YP_004433012.1 KEGG: cyh:Cyan8802_0605 arsenate reductase and related; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related YP_004433013.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_0775 PEP motif-containing protein YP_004433014.1 PFAM: regulatory protein TetR; KEGG: rop:ROP_60690 TetR family transcriptional regulator YP_004433015.1 PFAM: alpha/beta hydrolase fold; KEGG: bmq:BMQ_2920 hydrolase, alpha/beta fold family YP_004433016.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: sfr:Sfri_2040 TonB-dependent receptor YP_004433017.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpt:Rpal_2670 short-chain dehydrogenase/reductase SDR YP_004433018.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msm:MSMEG_4921 methylmalonyl-CoA epimerase YP_004433019.1 PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; KEGG: pfl:PFL_5668 quinate/shikimate dehydrogenase, SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004433020.1 TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; KEGG: pat:Patl_0776 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein YP_004433021.1 KEGG: pat:Patl_0777 twin-arginine translocation pathway signal YP_004433022.1 KEGG: pat:Patl_0778 transmembrane prediction YP_004433023.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: pat:Patl_0779 mannitol dehydrogenase-like YP_004433024.1 KEGG: pat:Patl_0780 hypothetical protein YP_004433025.1 KEGG: pat:Patl_0781 hypothetical protein YP_004433026.1 KEGG: pat:Patl_0782 hypothetical protein YP_004433027.1 KEGG: pat:Patl_0783 hypothetical protein YP_004433028.1 PFAM: metallophosphoesterase; KEGG: pat:Patl_0784 metallophosphoesterase YP_004433029.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_0785 TonB-dependent receptor, plug YP_004433030.1 PFAM: FecR protein; KEGG: pat:Patl_0786 FecR YP_004433031.1 KEGG: pat:Patl_0787 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_004433032.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_0788 hypothetical protein YP_004433033.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_0789 hypothetical protein YP_004433034.1 KEGG: pat:Patl_0790 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding YP_004433035.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_0791 lipoprotein NlpI YP_004433036.1 KEGG: pat:Patl_0792 hypothetical protein YP_004433037.1 TIGRFAM: quinolinate synthetase complex, A subunit; KEGG: pat:Patl_0793 quinolinate synthetase; PFAM: Quinolinate synthetase A YP_004433038.1 KEGG: pat:Patl_0794 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004433039.1 KEGG: vex:VEA_003902 integrase YP_004433040.1 KEGG: pat:Patl_3553 helix-turn-helix, type 11 YP_004433041.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_3552 glyoxalase/bleomycin resistance protein/dioxygenase YP_004433043.1 KEGG: pat:Patl_3551 hypothetical protein YP_004433044.1 KEGG: pat:Patl_3550 hypothetical protein YP_004433045.1 KEGG: pha:PSHAa1740 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor YP_004433046.1 KEGG: sde:Sde_2873 poly(beta-D-mannuronate) lyase YP_004433047.1 KEGG: sde:Sde_2478 cyclic nucleotide-binding domain-containing protein; PFAM: Alginate lyase 2 YP_004433048.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; KEGG: pat:Patl_3543 Hpt sensor hybrid histidine kinase; SMART: GGDEF domain containing protein YP_004433049.1 KEGG: mmw:Mmwyl1_3154 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH YP_004433050.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: swp:swp_3964 4Fe-4S ferredoxin, iron-sulfur binding YP_004433051.1 KEGG: pat:Patl_3548 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein YP_004433052.1 KEGG: pat:Patl_3547 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004433053.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: pat:Patl_3546 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004433054.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_3545 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_004433055.1 KEGG: pat:Patl_3543 Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; Hpt domain protein; SMART: response regulator receiver; Hpt domain protein YP_004433056.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_3542 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver YP_004433057.1 TIGRFAM: diguanylate cyclase; PFAM: sigma-54 factor interaction domain-containing protein; GGDEF domain containing protein; KEGG: pat:Patl_3541 response regulator receiver protein; SMART: GGDEF domain containing protein; AAA ATPase YP_004433058.1 KEGG: pat:Patl_3540 hypothetical protein YP_004433059.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pat:Patl_3536 antibiotic biosynthesis monooxygenase YP_004433060.1 PFAM: Protein of unknown function DUF2167, membrane; KEGG: pat:Patl_3535 hypothetical protein YP_004433061.1 KEGG: pat:Patl_3534 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004433062.1 KEGG: pat:Patl_3533 glycerol kinase; TIGRFAM: glycerol kinase; PFAM: Carbohydrate kinase, FGGY-like YP_004433063.1 KEGG: pat:Patl_3532 GntR-like; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004433064.1 PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: pat:Patl_3531 SMP-30/gluconolaconase/LRE-like region YP_004433065.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: pat:Patl_3530 2-keto-3-deoxy-galactonokinase YP_004433066.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3529 short-chain dehydrogenase/reductase SDR YP_004433067.1 KEGG: pat:Patl_3528 cell division protein MraZ; TIGRFAM: MraZ protein; PFAM: MraZ domain YP_004433068.1 KEGG: pat:Patl_3527 S-adenosyl-methyltransferase MraW; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase YP_004433069.1 KEGG: pat:Patl_3526 cell division protein FtsL; TIGRFAM: cell division protein FtsL; PFAM: cell division protein FtsL YP_004433070.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pat:Patl_3525 peptidoglycan glycosyltransferase YP_004433071.1 KEGG: pat:Patl_3524 UDP-N-acetylmuramyl-tripeptide synthetases; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004433072.1 KEGG: pat:Patl_3523 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004433073.1 KEGG: pat:Patl_3522 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004433074.1 KEGG: pat:Patl_3521 UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein YP_004433075.1 KEGG: pat:Patl_3520 cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein YP_004433076.1 KEGG: pat:Patl_3519 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain YP_004433077.1 KEGG: pat:Patl_3518 UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_004433078.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: pat:Patl_3517 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_004433079.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pat:Patl_3516 cell division protein FtsQ YP_004433080.1 KEGG: pat:Patl_3515 cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA YP_004433081.1 KEGG: pat:Patl_3514 cell division protein FtsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain YP_004433082.1 KEGG: pat:Patl_3513 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase YP_004433083.1 PFAM: Peptidase M23; KEGG: pat:Patl_3512 peptidase M23B YP_004433084.1 KEGG: pat:Patl_3511 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein YP_004433085.1 KEGG: pat:Patl_3510 mutator MutT protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase YP_004433086.1 KEGG: pat:Patl_3509 hypothetical protein YP_004433087.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: pat:Patl_3508 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; regulatory protein DeoR YP_004433088.1 KEGG: pat:Patl_3507 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004433089.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: pat:Patl_3506 inosine/uridine-preferring nucleoside hydrolase YP_004433090.1 PFAM: PfkB domain protein; KEGG: pat:Patl_3505 PfkB YP_004433091.1 KEGG: pat:Patl_3504 hypothetical protein YP_004433093.1 KEGG: pat:Patl_3503 YecA family protein; TIGRFAM: yecA family protein; PFAM: Uncharacterised protein family UPF0149 (YgfB) YP_004433094.1 PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: pat:Patl_3502 peptidase M24 YP_004433095.1 KEGG: pat:Patl_3501 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase YP_004433096.1 KEGG: pat:Patl_3500 YbaK/EbsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region YP_004433097.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pat:Patl_3498 multiple antibiotic resistance (MarC)-related proteins YP_004433098.1 KEGG: pat:Patl_3497 hypothetical protein YP_004433099.1 KEGG: pat:Patl_3496 hypothetical protein YP_004433100.1 TIGRFAM: conserved hypothetical protein; KEGG: pat:Patl_3495 hypothetical protein YP_004433101.1 PFAM: protein of unknown function DUF58; KEGG: pat:Patl_3494 hypothetical protein YP_004433102.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: pat:Patl_3493 ATPase YP_004433103.1 KEGG: pat:Patl_3492 twin-arginine translocation pathway signal YP_004433104.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pat:Patl_3491 peptidase U62, modulator of DNA gyrase YP_004433105.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pat:Patl_3490 twin-arginine translocation pathway signal YP_004433106.1 PFAM: protein of unknown function DUF885; KEGG: pat:Patl_3489 hypothetical protein YP_004433107.1 PFAM: peptidase M24; creatinase; KEGG: pat:Patl_3488 twin-arginine translocation pathway signal YP_004433108.1 KEGG: pat:Patl_3487 hypothetical protein YP_004433109.1 KEGG: pat:Patl_3486 hypothetical protein YP_004433110.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pat:Patl_3485 glycerophosphoryl diester phosphodiesterase YP_004433111.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_3484 hypothetical protein YP_004433112.1 KEGG: pat:Patl_3483 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related YP_004433113.1 KEGG: pat:Patl_3482 ribosome-associated GTPase; TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC YP_004433114.1 KEGG: pat:Patl_3481 oligoribonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_004433115.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433116.1 KEGG: pat:Patl_3480 formate/nitrite transporter; manually curated; PFAM: formate/nitrite transporter YP_004433117.1 KEGG: pat:Patl_3479 protein serine/threonine phosphatases; PFAM: Serine/threonine-protein kinase-like domain; Stage II sporulation protein E; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; Tyrosine-protein kinase, catalytic domain YP_004433118.1 TIGRFAM: cyanate lyase; KEGG: pat:Patl_3478 cyanate hydratase; PFAM: Cyanate lyase domain protein YP_004433119.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: pat:Patl_3477 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein YP_004433120.1 KEGG: pat:Patl_3476 beta-lactamase-like YP_004433121.1 KEGG: pat:Patl_3475 anaerobic nitric oxide reductase transcription regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; GAF domain protein YP_004433122.1 PFAM: globin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: pat:Patl_3472 globin YP_004433123.1 KEGG: pat:Patl_0825 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein YP_004433124.1 KEGG: pat:Patl_3469 pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004433125.1 KEGG: pat:Patl_3464 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004433126.1 PFAM: protein of unknown function DUF502; KEGG: pat:Patl_3463 hypothetical protein YP_004433127.1 KEGG: pat:Patl_3462 hypothetical protein YP_004433128.1 KEGG: pat:Patl_3461 hypothetical protein YP_004433129.1 KEGG: pat:Patl_3460 hypothetical protein YP_004433130.1 KEGG: pat:Patl_3459 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_004433131.1 KEGG: pat:Patl_3458 GrxB family glutaredoxin; TIGRFAM: glutaredoxin, GrxB family; PFAM: glutaredoxin 2 domain protein YP_004433132.1 KEGG: pat:Patl_3456 type III restriction enzyme, res subunit; PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004433133.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator transporter YP_004433134.1 KEGG: vex:VEA_003265 hypothetical protein YP_004433135.1 KEGG: tva:TVAG_497970 hypothetical protein YP_004433136.1 KEGG: cqu:CpipJ_CPIJ013303 hypothetical protein YP_004433137.1 KEGG: ppp:PHYPADRAFT_92706 hypothetical protein YP_004433138.1 KEGG: vvy:VV1763 hypothetical protein YP_004433139.1 KEGG: pat:Patl_3448 hypothetical protein YP_004433140.1 PFAM: SMC domain protein; KEGG: pat:Patl_3443 SMC protein-like YP_004433141.1 manually curated; TIGRFAM: nuclease SbcCD, D subunit; KEGG: pat:Patl_3442 exonuclease subunit SbcD; PFAM: metallophosphoesterase YP_004433142.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3441 TonB-dependent receptor YP_004433143.1 KEGG: pat:Patl_3440 hypothetical protein YP_004433144.1 KEGG: pat:Patl_3439 hypothetical protein; PFAM: protein of unknown function DUF227; SMART: CHK kinase-like YP_004433145.1 KEGG: pat:Patl_3438 hypothetical protein YP_004433146.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; KEGG: pat:Patl_3437 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_004433147.1 PFAM: lipolytic protein G-D-S-L family; KEGG: pat:Patl_3436 PEP motif-containing protein YP_004433149.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: pat:Patl_3434 lipid ABC transporter ATPase/inner membrane protein; SMART: AAA ATPase YP_004433150.1 KEGG: pat:Patl_3433 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_004433151.1 KEGG: pat:Patl_3432 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein YP_004433152.1 KEGG: pat:Patl_3431 radical SAM-like; PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_004433153.1 KEGG: pat:Patl_3430 PfpI family intracellular peptidase; TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain-containing protein YP_004433154.1 PFAM: Strictosidine synthase, conserved region; KEGG: pat:Patl_3429 strictosidine synthase YP_004433155.1 KEGG: pat:Patl_3428 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: aconitate hydratase 2; PFAM: Aconitase B; aconitate hydratase domain-containing protein YP_004433156.1 PFAM: protein of unknown function DUF192; KEGG: pat:Patl_3427 hypothetical protein YP_004433157.1 PFAM: Amidase; KEGG: pat:Patl_3426 amidase YP_004433158.1 TIGRFAM: aspartate kinase; KEGG: pat:Patl_3425 aspartate kinase III; PFAM: aspartate/glutamate/uridylate kinase YP_004433159.1 KEGG: pat:Patl_3424 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004433160.1 TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: pat:Patl_3423 diadenosine tetraphosphatase; PFAM: metallophosphoesterase YP_004433161.1 PFAM: ApaG domain protein; KEGG: pat:Patl_3422 ApaG YP_004433162.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: pat:Patl_3421 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase-like YP_004433163.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: pat:Patl_3420 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_004433164.1 PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pat:Patl_3419 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004433165.1 PFAM: Organic solvent tolerance protein; OstA family protein; KEGG: pat:Patl_3418 organic solvent tolerance protein YP_004433166.1 PFAM: aminoglycoside phosphotransferase; KEGG: pat:Patl_3417 aminoglycoside phosphotransferase YP_004433167.1 PFAM: Nucleotidyl transferase; KEGG: pat:Patl_3416 nucleotidyl transferase YP_004433168.1 KEGG: pat:Patl_3415 Dna-J like membrane chaperone protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_004433169.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3414 TonB-dependent receptor YP_004433170.1 KEGG: pat:Patl_3413 hypothetical protein YP_004433171.1 KEGG: pat:Patl_3412 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004433172.1 KEGG: pat:Patl_3411 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004433173.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3410 TonB-dependent receptor YP_004433174.1 KEGG: pat:Patl_3409 hypothetical protein YP_004433175.1 KEGG: pat:Patl_3407 hypothetical protein YP_004433176.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: pat:Patl_3406 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein YP_004433177.1 KEGG: pat:Patl_3405 hypothetical protein YP_004433178.1 PFAM: MltA-interacting MipA family protein; KEGG: pat:Patl_3404 MltA-interacting MipA YP_004433179.1 KEGG: pat:Patl_3403 hypothetical protein YP_004433180.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433181.1 KEGG: pat:Patl_3402 hypothetical protein YP_004433182.1 KEGG: pat:Patl_3401 hypothetical protein YP_004433183.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_3399 MscS mechanosensitive ion channel YP_004433184.1 KEGG: pat:Patl_3398 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_004433185.1 KEGG: pat:Patl_3397 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004433186.1 KEGG: pat:Patl_3396 NADPH-dependent FMN reductase; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase YP_004433187.1 KEGG: pat:Patl_3395 bile acid:sodium symporter; TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter YP_004433188.1 KEGG: pat:Patl_3394 2,3,4, 5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_004433189.1 KEGG: pat:Patl_3393 hypothetical protein YP_004433190.1 KEGG: pat:Patl_3392 protein of unknown function RIO1; PFAM: RIO-like kinase; SMART: protein of unknown function RIO1 YP_004433191.1 KEGG: pat:Patl_3391 peptidase A2A YP_004433192.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_3390 thioesterase superfamily protein YP_004433193.1 KEGG: pat:Patl_3389 hypothetical protein YP_004433194.1 KEGG: pat:Patl_3388 hypothetical protein YP_004433195.1 PFAM: protein of unknown function DUF462; KEGG: pat:Patl_3387 hypothetical protein YP_004433196.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pat:Patl_3386 ATP-NAD/AcoX kinase YP_004433197.1 PFAM: YfcL protein; KEGG: pat:Patl_3385 hypothetical protein YP_004433198.1 KEGG: pat:Patl_3384 hypothetical protein; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: protein of unknown function DUF752; FAD dependent oxidoreductase YP_004433199.1 PFAM: Beta-ketoacyl synthase; KEGG: pat:Patl_3383 beta-ketoacyl synthase YP_004433200.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3382 major facilitator transporter YP_004433201.1 KEGG: pat:Patl_3381 rRNA (guanine-N(1)-)-methyltransferase YP_004433202.1 KEGG: pat:Patl_3380 alkaline phosphatase superfamily hydrolase YP_004433203.1 PFAM: protein of unknown function DUF1414; KEGG: pat:Patl_3379 hypothetical protein YP_004433204.1 PFAM: 37kDa nucleoid-associated protein; KEGG: pat:Patl_3378 37 kDa nucleoid-associated protein YP_004433205.1 KEGG: pat:Patl_3377 hypothetical protein YP_004433206.1 PFAM: Peptidase M23; KEGG: pat:Patl_3376 peptidase M23B YP_004433207.1 KEGG: pat:Patl_3375 hypothetical protein YP_004433208.1 PFAM: phosphoesterase DHHA1; KEGG: pat:Patl_3374 exopolyphosphatase-related protein YP_004433209.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_3373 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004433210.1 KEGG: pat:Patl_3372 hypothetical protein YP_004433211.1 KEGG: pat:Patl_3371 hypothetical protein YP_004433212.1 KEGG: pat:Patl_3367 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp YP_004433213.1 PFAM: class II aldolase/adducin family protein; KEGG: pat:Patl_3366 class II aldolase/adducin-like YP_004433214.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_3365 alpha/beta hydrolase fold YP_004433215.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pat:Patl_3364 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004433216.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: pat:Patl_3363 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_004433217.1 TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; KEGG: pat:Patl_3362 ATPase YP_004433218.1 KEGG: pat:Patl_3361 hypothetical protein YP_004433219.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_3360 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004433220.1 KEGG: pat:Patl_3359 hypothetical protein YP_004433221.1 PFAM: protein of unknown function DUF481; KEGG: pat:Patl_3358 hypothetical protein YP_004433222.1 PFAM: protein of unknown function DUF481; KEGG: pat:Patl_3357 salt-induced outer membrane protein YP_004433223.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pat:Patl_3356 signal transduction protein YP_004433224.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_3355 alpha/beta hydrolase fold YP_004433225.1 PFAM: protein of unknown function DUF1289; KEGG: pat:Patl_3354 hypothetical protein YP_004433226.1 KEGG: pat:Patl_3353 endothelin-converting protein 1; PFAM: peptidase M13; Peptidase M13, neprilysin-like YP_004433227.1 KEGG: pat:Patl_3352 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004433228.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; KEGG: pat:Patl_3351 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_004433229.1 KEGG: pat:Patl_3350 pyruvate dehydrogenase subunit E1; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: Transketolase domain-containing protein YP_004433230.1 KEGG: pat:Patl_3349 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_004433231.1 KEGG: pat:Patl_3348 regulatory protein AmpE YP_004433232.1 KEGG: pat:Patl_3347 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_004433233.1 KEGG: pat:Patl_3346 hypothetical protein YP_004433234.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: pat:Patl_3345 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_004433235.1 KEGG: pat:Patl_3344 prepilin-type cleavage/methylation YP_004433236.1 PFAM: Type II secretion system F domain; KEGG: pat:Patl_3343 type II secretion system protein YP_004433237.1 KEGG: pat:Patl_3342 prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV YP_004433238.1 TIGRFAM: dephospho-CoA kinase; KEGG: pat:Patl_3341 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_004433239.1 PFAM: protein of unknown function DUF1342; KEGG: pat:Patl_3340 hypothetical protein YP_004433240.1 PFAM: protein of unknown function DUF329; KEGG: pat:Patl_3339 hypothetical protein YP_004433241.1 KEGG: pat:Patl_3338 glutaredoxin family protein; TIGRFAM: glutaredoxin-family domain protein; PFAM: Redoxin domain protein; glutaredoxin YP_004433242.1 PFAM: phospholipase/Carboxylesterase; KEGG: pat:Patl_3337 phospholipase/carboxylesterase YP_004433243.1 KEGG: pat:Patl_3336 glutathione S-transferase YP_004433244.1 KEGG: pat:Patl_3335 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein YP_004433245.1 PFAM: protein of unknown function DUF558; KEGG: pat:Patl_3334 hypothetical protein YP_004433247.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_3333 MscS mechanosensitive ion channel YP_004433248.1 PFAM: peptidase M48 Ste24p; KEGG: pat:Patl_3332 peptidase M48, Ste24p YP_004433249.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: pat:Patl_3331 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_004433250.1 KEGG: pat:Patl_3330 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region YP_004433251.1 TIGRFAM: D-erythrose-4-phosphate dehydrogenase; KEGG: pat:Patl_3329 D-erythrose-4-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004433252.1 KEGG: pat:Patl_3328 phosphoglycerate kinase; PFAM: phosphoglycerate kinase YP_004433253.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: pat:Patl_3327 fructose-1,6-bisphosphate aldolase YP_004433254.1 KEGG: pat:Patl_3326 orphan protein YP_004433255.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pat:Patl_3325 hypothetical protein YP_004433256.1 KEGG: pat:Patl_3324 hypothetical protein YP_004433257.1 KEGG: pat:Patl_3323 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_004433258.1 TIGRFAM: Polyphosphate kinase; KEGG: pat:Patl_3322 polyphosphate kinase; PFAM: Polyphosphate kinase YP_004433259.1 PFAM: amino acid-binding ACT domain protein; KEGG: pat:Patl_3321 amino acid-binding ACT YP_004433260.1 PFAM: Putitive phosphate transport regulator; KEGG: pat:Patl_3320 hypothetical protein YP_004433261.1 PFAM: phosphate transporter; KEGG: pat:Patl_3319 phosphate transporter YP_004433262.1 KEGG: pat:Patl_3318 phosphate binding protein YP_004433263.1 KEGG: pat:Patl_3317 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component YP_004433264.1 KEGG: pat:Patl_3316 phosphate ABC transporter, inner membrane subunit PstA; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component YP_004433265.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; KEGG: pat:Patl_3315 phosphate ABC transporter, ATPase subunit; SMART: AAA ATPase YP_004433266.1 KEGG: pat:Patl_3314 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein YP_004433267.1 PFAM: phosphate-selective porin O and P; KEGG: pat:Patl_3313 phosphate-selective porin O and P YP_004433268.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_3312 LysR family transcriptional regulator YP_004433269.1 KEGG: pat:Patl_3311 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004433270.1 KEGG: pat:Patl_3310 hypothetical protein YP_004433271.1 KEGG: pat:Patl_3309 hypothetical protein YP_004433272.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_3308 hypothetical protein YP_004433273.1 KEGG: pat:Patl_3307 dienelactone hydrolase-like YP_004433274.1 PFAM: MgtC/SapB transporter; KEGG: pat:Patl_3306 MgtC/SapB transporter YP_004433275.1 KEGG: pat:Patl_3305 hypothetical protein YP_004433276.1 KEGG: pat:Patl_3304 NAD-dependent epimerase/dehydratase YP_004433277.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_3303 LysR family transcriptional regulator YP_004433278.1 KEGG: pat:Patl_3302 hypothetical protein YP_004433279.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_3301 hypothetical protein YP_004433280.1 PFAM: fatty acid cistrans isomerase; KEGG: pat:Patl_3300 fatty acid cistrans isomerase YP_004433281.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3299 major facilitator transporter YP_004433282.1 KEGG: pat:Patl_3298 sn-glycerol-3-phosphate transporter; TIGRFAM: glycerol-3-phosphate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1 YP_004433283.1 KEGG: pat:Patl_3297 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004433284.1 TIGRFAM: PEP-CTERM system histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pat:Patl_3296 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein YP_004433285.1 TIGRFAM: PEP-CTERM system response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: pat:Patl_3295 two component, sigma54 specific, fis family transcriptional regulator; SMART: response regulator receiver; AAA ATPase YP_004433286.1 PFAM: LrgA family protein; KEGG: pat:Patl_3294 LrgA YP_004433287.1 PFAM: LrgB family protein; KEGG: pat:Patl_3293 LrgB-like protein YP_004433288.1 KEGG: pat:Patl_3292 hypothetical protein YP_004433289.1 KEGG: pat:Patl_3291 hypothetical protein YP_004433290.1 KEGG: pat:Patl_3290 hypothetical protein YP_004433291.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pat:Patl_3289 DNA methylase N-4/N-6 YP_004433292.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; KEGG: pat:Patl_3288 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004433293.1 KEGG: pat:Patl_3287 deoxyribonucleotide triphosphate pyrophosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_004433294.1 KEGG: pat:Patl_3286 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004433295.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2977 short-chain dehydrogenase/reductase SDR YP_004433296.1 KEGG: pat:Patl_2976 hypothetical protein YP_004433297.1 KEGG: pat:Patl_2975 lipase YP_004433298.1 KEGG: pat:Patl_3284 ATP-dependent RNA helicase SrmB; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004433299.1 PFAM: dUTPase; KEGG: pat:Patl_3283 hypothetical protein YP_004433300.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: pat:Patl_3282 metal dependent phosphohydrolase YP_004433301.1 SMART: AAA ATPase; KEGG: pat:Patl_3281 ATPase YP_004433302.1 KEGG: pat:Patl_3280 hypothetical protein YP_004433303.1 PFAM: extracellular solute-binding protein family 3; KEGG: pat:Patl_3279 hypothetical protein YP_004433304.1 KEGG: pat:Patl_3278 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004433305.1 KEGG: pat:Patl_3277 tryptophan halogenase YP_004433306.1 KEGG: pat:Patl_3276 tryptophan halogenase YP_004433307.1 KEGG: pat:Patl_3275 sugar (glycoside-pentoside-hexuronide) transporter; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_004433308.1 PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: pat:Patl_3274 glycosyltransferase 36 YP_004433309.1 PFAM: CreA family protein; KEGG: pat:Patl_3273 CreA YP_004433310.1 KEGG: pat:Patl_3272 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004433311.1 KEGG: pat:Patl_3271 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein YP_004433312.1 KEGG: pat:Patl_3270 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain-containing protein YP_004433313.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: pat:Patl_3269 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004433314.1 KEGG: pat:Patl_3268 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_004433315.1 KEGG: pat:Patl_3267 hypothetical protein YP_004433316.1 TIGRFAM: enolase; KEGG: pat:Patl_3266 phosphopyruvate hydratase; PFAM: Enolase-like YP_004433317.1 TIGRFAM: CTP synthase; KEGG: pat:Patl_3265 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_004433318.1 KEGG: pat:Patl_3264 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004433319.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; KEGG: pat:Patl_3263 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_004433320.1 PFAM: CinA domain protein; KEGG: pat:Patl_3262 CinA-like YP_004433321.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: vsp:VS_II0254 hypothetical protein YP_004433322.1 KEGG: pat:Patl_3261 hypothetical protein YP_004433323.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pat:Patl_3260 glutathione-dependent formaldehyde-activating, GFA YP_004433324.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: pat:Patl_3259 recombinase A; SMART: AAA ATPase YP_004433325.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_1203 hypothetical protein YP_004433326.1 KEGG: rba:RB12633 protein associating with small stress protein PASs1 YP_004433327.1 PFAM: type III secretion exporter; KEGG: pat:Patl_3258 FlhB domain-containing protein YP_004433328.1 KEGG: pat:Patl_3257 hypothetical protein YP_004433329.1 SMART: AAA ATPase; manually curated; KEGG: pat:Patl_3256 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related YP_004433330.1 KEGG: pat:Patl_3255 heme exporter protein CcmB; TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB YP_004433331.1 KEGG: pat:Patl_3254 heme exporter protein CcmC; TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein YP_004433332.1 KEGG: pat:Patl_3253 heme exporter protein D (CcmD); TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD) YP_004433333.1 PFAM: CcmE/CycJ protein; KEGG: pat:Patl_3252 cytochrome c-type biogenesis protein CcmE YP_004433334.1 KEGG: pat:Patl_3251 cytochrome c-type biogenesis protein CcmF; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein YP_004433335.1 KEGG: pat:Patl_3250 periplasmic protein thiol--disulphide oxidoreductase DsbE; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein YP_004433336.1 PFAM: cytochrome C biogenesis protein; KEGG: pat:Patl_3249 cytochrome c biogenesis protein YP_004433337.1 TIGRFAM: cytochrome c-type biogenesis protein CcmI; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_3248 tetratricopeptide TPR_2; SMART: Tetratricopeptide repeat YP_004433338.1 PFAM: VacJ family lipoprotein; KEGG: pat:Patl_3247 VacJ-like lipoprotein YP_004433339.1 KEGG: pat:Patl_3246 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004433340.1 manually curated; KEGG: pat:Patl_3245 hypothetical protein YP_004433341.1 KEGG: pat:Patl_3244 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region YP_004433342.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: spl:Spea_1395 polysaccharide export protein YP_004433343.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: swd:Swoo_1653 lipopolysaccharide biosynthesis protein YP_004433344.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: vex:VEA_001803 capsular polysaccharide biosynthesis protein D YP_004433345.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: vsa:VSAL_I0252 DegT/DnrJ/EryC1/StrS aminotransferase YP_004433346.1 PFAM: glycosyl transferase family 2; KEGG: abu:Abu_1811 glycosyltransferase YP_004433347.1 KEGG: gsu:GSU1970 polysaccharide biosynthesis protein, PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein YP_004433348.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: tit:Thit_0484 N-acylneuraminate cytidylyltransferase YP_004433349.1 PFAM: Nucleotidyl transferase; CBS domain containing protein; KEGG: tdn:Suden_0598 nucleotidyl transferase YP_004433350.1 KEGG: vfm:VFMJ11_0180 hypothetical protein YP_004433351.1 PFAM: O-antigen polymerase; KEGG: pvi:Cvib_0643 O-antigen polymerase YP_004433352.1 PFAM: glycosyl transferase family 2; KEGG: gsu:GSU1510 glycosyl transferase, group 2 family protein YP_004433353.1 PFAM: polysaccharide biosynthesis protein; KEGG: bbe:BBR47_42540 polysaccharide biosynthesis protein YP_004433354.1 PFAM: glycosyl transferase family 2; KEGG: vfi:VF_0175 glycosyltransferase YP_004433355.1 KEGG: pmi:PMT9312_1318 hypothetical protein YP_004433356.1 KEGG: sfr:Sfri_2824 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: Glycosyl transferase, family 4, conserved region YP_004433357.1 PFAM: protein of unknown function DUF940 membrane lipoprotein; KEGG: pat:Patl_3204 protein of unknown function DUF940, membrane lipoprotein YP_004433358.1 PFAM: protein of unknown function DUF1017; KEGG: pat:Patl_3203 hypothetical protein YP_004433359.1 KEGG: pat:Patl_3202 hypothetical protein YP_004433360.1 KEGG: pat:Patl_3201 hypothetical protein YP_004433361.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pat:Patl_3200 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_004433362.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: pat:Patl_3199 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004433363.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; KEGG: pat:Patl_3198 helix-hairpin-helix repeat-containing competence protein ComEA; SMART: Helix-hairpin-helix DNA-binding class 1 YP_004433364.1 KEGG: pat:Patl_3197 isocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_004433365.1 KEGG: pat:Patl_3196 signal transduction protein YP_004433366.1 KEGG: pat:Patl_3195 SmpA/OmlA family lipoprotein YP_004433367.1 PFAM: Conserved hypothetical protein CHP00730; KEGG: pat:Patl_3194 hypothetical protein YP_004433368.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: pat:Patl_3193 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_004433369.1 PFAM: Syd family protein; KEGG: pat:Patl_3192 SecY interacting protein Syd YP_004433370.1 KEGG: pat:Patl_3191 hypothetical protein YP_004433371.1 KEGG: pat:Patl_3190 hypothetical protein YP_004433372.1 KEGG: pat:Patl_3189 hypothetical protein YP_004433373.1 KEGG: pat:Patl_3188 hypothetical protein YP_004433374.1 KEGG: pat:Patl_3187 hypothetical protein YP_004433375.1 KEGG: pat:Patl_3186 hypothetical protein YP_004433376.1 PFAM: protein of unknown function DUF446; KEGG: pat:Patl_3185 hypothetical protein YP_004433377.1 PFAM: pseudouridine synthase; KEGG: pat:Patl_3184 pseudouridylate synthase YP_004433378.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: pat:Patl_3183 flavodoxin/nitric oxide synthase YP_004433379.1 PFAM: peptidase M28; protease-associated PA domain protein; KEGG: pat:Patl_3182 peptidase M28 YP_004433380.1 KEGG: pat:Patl_3181 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20 YP_004433381.1 KEGG: pat:Patl_3180 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein YP_004433382.1 KEGG: pat:Patl_3179 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase YP_004433383.1 KEGG: pat:Patl_3178 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase YP_004433384.1 TIGRFAM: lipoprotein signal peptidase; KEGG: pat:Patl_3177 lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II YP_004433385.1 KEGG: pat:Patl_3176 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type YP_004433386.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: pat:Patl_3175 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein YP_004433387.1 manually curated; KEGG: pat:Patl_3174 hypothetical protein YP_004433388.1 KEGG: pat:Patl_3173 prepilin-type cleavage/methylation-like YP_004433389.1 KEGG: pat:Patl_3172 hypothetical protein YP_004433390.1 KEGG: pat:Patl_3171 Tfp pilus assembly protein tip-associated adhesin PilY1-like YP_004433391.1 KEGG: pat:Patl_3170 prepilin-type cleavage/methylation YP_004433392.1 KEGG: pat:Patl_3169 prepilin-type cleavage/methylation YP_004433393.1 KEGG: pat:Patl_3168 prepilin-type cleavage/methylation YP_004433394.1 KEGG: pat:Patl_3167 hypothetical protein YP_004433395.1 KEGG: pat:Patl_3166 prepilin-type cleavage/methylation-like YP_004433396.1 KEGG: pat:Patl_3165 hypothetical protein YP_004433397.1 manually curated; KEGG: pat:Patl_3164 prepilin-type cleavage/methylation-like YP_004433398.1 TIGRFAM: NAD+ synthetase; KEGG: pat:Patl_3163 NAD synthetase YP_004433399.1 PFAM: nitrogen regulatory protein P-II; KEGG: pat:Patl_3162 nitrogen regulatory protein P-II YP_004433400.1 KEGG: pat:Patl_3161 peptidylprolyl isomerase, FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type YP_004433401.1 KEGG: pat:Patl_3160 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase) YP_004433402.1 PFAM: protein of unknown function DUF339; KEGG: pat:Patl_3159 hypothetical protein YP_004433403.1 manually curated; KEGG: pat:Patl_3158 hypothetical protein YP_004433404.1 PFAM: MaoC domain protein dehydratase; KEGG: pat:Patl_3157 MaoC-like dehydratase YP_004433405.1 KEGG: pat:Patl_3156 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_004433406.1 KEGG: pat:Patl_3155 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_004433407.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: pat:Patl_3154 sigma-E factor negative regulatory protein YP_004433408.1 PFAM: MucB/RseB family protein; KEGG: pat:Patl_3153 sigma E regulatory protein, MucB/RseB YP_004433409.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: pat:Patl_3152 positive regulator of sigma E, RseC/MucC YP_004433410.1 KEGG: pat:Patl_3151 GTP-binding protein LepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_004433411.1 KEGG: pat:Patl_3150 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region YP_004433412.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: pat:Patl_3149 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein YP_004433413.1 KEGG: pat:Patl_3148 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein YP_004433414.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: pat:Patl_3147 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; Pyridoxine 5'-phosphate oxidase, dimerisation-like YP_004433415.1 PFAM: TatD-related deoxyribonuclease; KEGG: pat:Patl_3146 TatD-related deoxyribonuclease YP_004433416.1 KEGG: pat:Patl_3145 hypothetical protein YP_004433417.1 KEGG: pat:Patl_3144 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004433418.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pat:Patl_3143 ABC-2 type transporter YP_004433419.1 PFAM: ABC-type uncharacterised transport system; KEGG: pat:Patl_3142 hypothetical protein YP_004433420.1 KEGG: pat:Patl_3141 hypothetical protein YP_004433421.1 PFAM: protein of unknown function DUF1415; KEGG: pat:Patl_3140 hypothetical protein YP_004433422.1 KEGG: pat:Patl_3139 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004433423.1 KEGG: pat:Patl_3138 hypothetical protein YP_004433424.1 KEGG: pat:Patl_3137 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type YP_004433425.1 TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; KEGG: pat:Patl_3136 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP YP_004433426.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; KEGG: pat:Patl_3135 ATP-dependent protease ATP-binding subunit ClpX; SMART: AAA ATPase YP_004433427.1 SMART: peptidase S16 lon domain protein; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: pat:Patl_3134 ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein YP_004433428.1 KEGG: pat:Patl_3133 histone-like DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_004433429.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pat:Patl_3132 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004433430.1 manually curated; KEGG: pat:Patl_3131 membrane protein YP_004433431.1 PFAM: nucleoside diphosphate kinase; KEGG: pat:Patl_3130 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase YP_004433432.1 KEGG: pat:Patl_3129 ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein YP_004433433.1 TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: Peptidoglycan-binding lysin domain; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_3128 type IV pilus biogenesis/stability protein PilW; SMART: Peptidoglycan-binding LysM; Tetratricopeptide repeat YP_004433434.1 KEGG: pat:Patl_3127 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004433435.1 KEGG: pat:Patl_3126 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_004433436.1 PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; manually curated; KEGG: pat:Patl_3125 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase YP_004433437.1 KEGG: pat:Patl_3124 TPR-like domain-containing protein; manually curated; PFAM: Protein of unknown function DUF2133 YP_004433438.1 TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; KEGG: pat:Patl_3123 outer membrane protein assembly complex subunit YfgL; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004433439.1 TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: pat:Patl_3122 GTP-binding protein EngA; SMART: Ras small GTPase, Ras type; AAA ATPase YP_004433440.1 KEGG: pat:Patl_3121 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_004433441.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: pat:Patl_3120 inosine 5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein YP_004433442.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; KEGG: pat:Patl_3119 GMP synthase; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I YP_004433443.1 PFAM: YaeQ family protein; KEGG: pat:Patl_3118 YaeQ YP_004433445.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pat:Patl_3117 hypothetical protein YP_004433446.1 KEGG: pat:Patl_3116 hypothetical protein YP_004433447.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pat:Patl_3115 CMP/dCMP deaminase, zinc-binding YP_004433448.1 KEGG: amc:MADE_01394 hypothetical protein YP_004433449.1 manually curated; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; KEGG: pat:Patl_3114 lytic transglycosylase, catalytic; SMART: extracellular solute-binding protein family 3 YP_004433450.1 PFAM: AIR synthase related protein domain protein; AIR synthase related protein; manually curated; KEGG: pat:Patl_3113 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase YP_004433451.1 KEGG: cpo:COPRO5265_0163 permeases of the major facilitator superfamily YP_004433452.1 PFAM: Smr protein/MutS2; KEGG: pat:Patl_3112 Smr protein/MutS2 YP_004433453.1 PFAM: Peptidase M1 membrane alanine aminopeptidase ; Leukotriene A4 hydrolase; KEGG: pat:Patl_3111 peptidase M1, membrane alanine aminopeptidase YP_004433454.1 KEGG: pat:Patl_3110 hypothetical protein YP_004433455.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3109 TonB-dependent receptor YP_004433456.1 KEGG: pat:Patl_3107 lipoprotein YP_004433457.1 PFAM: protein of unknown function DUF400; KEGG: pat:Patl_3106 hypothetical protein YP_004433458.1 PFAM: FlgN family protein; KEGG: pat:Patl_3105 FlgN YP_004433459.1 KEGG: pat:Patl_3104 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein YP_004433460.1 KEGG: pat:Patl_3103 flagellar basal body P-ring biosynthesis protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein YP_004433461.1 KEGG: pat:Patl_3102 response regulator receiver modulated CheW protein; PFAM: CheW domain protein; response regulator receiver; SMART: CheW domain protein; response regulator receiver YP_004433462.1 PFAM: MCP methyltransferase CheR-type; KEGG: pat:Patl_3101 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_004433463.1 KEGG: pat:Patl_3100 flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein YP_004433464.1 KEGG: pat:Patl_3099 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004433465.1 PFAM: flagellar hook capping protein; KEGG: pat:Patl_3098 flagellar basal body rod modification protein YP_004433466.1 KEGG: pat:Patl_3097 flagellar hook protein FlgE; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; flagellar basal body rod protein; protein of unknown function DUF1078 domain protein YP_004433467.1 KEGG: pat:Patl_3096 flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004433468.1 KEGG: pat:Patl_3095 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004433469.1 PFAM: flagellar L-ring protein; KEGG: pat:Patl_3094 flagellar basal body L-ring protein YP_004433470.1 PFAM: flagellar P-ring protein; KEGG: pat:Patl_3093 flagellar basal body P-ring protein YP_004433471.1 TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: pat:Patl_3092 flagellar rod assembly protein/muramidase FlgJ; SMART: Lysozyme subfamily 2 YP_004433472.1 KEGG: pat:Patl_3091 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein YP_004433473.1 KEGG: pat:Patl_3090 flagellar hook-associated protein FlgL; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein YP_004433474.1 KEGG: pat:Patl_3089 signal peptide prediction YP_004433475.1 PFAM: flagellin domain protein; KEGG: pat:Patl_3088 flagellin-like YP_004433476.1 PFAM: flagellin domain protein; KEGG: pat:Patl_3087 flagellin-like YP_004433477.1 KEGG: pat:Patl_3086 hypothetical protein YP_004433478.1 PFAM: flagellin domain protein; KEGG: pat:Patl_3085 flagellin-like YP_004433479.1 PFAM: flagellar protein FlaG protein; KEGG: pat:Patl_3084 flagellar protein FlaG protein YP_004433480.1 PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; KEGG: pat:Patl_3083 flagellar hook-associated 2-like YP_004433481.1 KEGG: pat:Patl_3082 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS YP_004433482.1 KEGG: pat:Patl_3081 hypothetical protein YP_004433483.1 KEGG: pat:Patl_3080 polysaccharide biosynthesis protein CapD; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: polysaccharide biosynthesis protein CapD YP_004433484.1 KEGG: pat:Patl_3079 DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase YP_004433485.1 KEGG: pat:Patl_3078 acylneuraminate cytidylyltransferase; TIGRFAM: pseudaminic acid CMP-transferase; PFAM: acylneuraminate cytidylyltransferase YP_004433486.1 KEGG: pat:Patl_3077 hypothetical protein YP_004433487.1 TIGRFAM: pseudaminic acid synthase; KEGG: pat:Patl_3076 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein YP_004433488.1 TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; KEGG: pat:Patl_3075 spore coat polysaccharide biosynthesis protein glycosyltransferase-like YP_004433489.1 TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; KEGG: pat:Patl_3074 hypothetical protein YP_004433490.1 KEGG: pat:Patl_3073 hypothetical protein YP_004433491.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_3072 hypothetical protein YP_004433492.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3071 short-chain dehydrogenase/reductase SDR YP_004433493.1 PFAM: LicD family protein; KEGG: ant:Arnit_2945 LicD family protein YP_004433494.1 TIGRFAM: cytidyltransferase-related domain protein; KEGG: aae:aq_1368 glycerol-3-phosphate cytidyltransferase; PFAM: cytidylyltransferase YP_004433495.1 KEGG: hmo:HM1_1230 hypothetical protein YP_004433496.1 PFAM: glycosyl transferase family 2; KEGG: mca:MCA0621 glycosyl transferase, group 2 family protein YP_004433497.1 KEGG: ilo:IL0555 UDP-glucose:glucosyl LPS a 1,2-glucosyltransferase YP_004433498.1 KEGG: ava:Ava_1112 hypothetical protein YP_004433499.1 KEGG: ava:Ava_1042 methyltransferase FkbM; TIGRFAM: methyltransferase FkbM family; PFAM: Protein of unknown function DUF672 YP_004433500.1 PFAM: Methyltransferase type 12; KEGG: cyh:Cyan8802_0296 methyltransferase type 12 YP_004433501.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cyh:Cyan8802_0292 acylneuraminate cytidylyltransferase YP_004433502.1 KEGG: chu:CHU_2763 dTDP-6-deoxy-L-hexose 3-O-methyltransferase YP_004433503.1 KEGG: cyh:Cyan8802_2668 N-acylneuraminate-9-phosphate synthase; PFAM: N-acetylneuraminic acid synthase domain; CBS domain containing protein; SAF domain protein; Xylose isomerase domain-containing protein TIM barrel YP_004433504.1 PFAM: protein of unknown function DUF115; KEGG: pat:Patl_3053 hypothetical protein YP_004433505.1 PFAM: flagellin domain protein; KEGG: pat:Patl_3052 flagellin-like YP_004433506.1 KEGG: pat:Patl_3051 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; flagellar regulatory FleQ domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase YP_004433507.1 KEGG: pat:Patl_3050 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004433508.1 KEGG: pat:Patl_3049 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase YP_004433509.1 KEGG: pat:Patl_3048 flagellar hook-basal body complex subunit FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE YP_004433510.1 KEGG: pat:Patl_3047 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: Flagellar M-ring domain protein; secretory protein YscJ/FliF family protein YP_004433511.1 KEGG: pat:Patl_3046 flagellar motor switch protein G; TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG YP_004433512.1 PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: pat:Patl_3045 flagellar assembly protein H YP_004433513.1 TIGRFAM: flagellar protein export ATPase FliI; ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: pat:Patl_3044 flagellum-specific ATP synthase; SMART: AAA ATPase YP_004433514.1 KEGG: pat:Patl_3043 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein YP_004433515.1 PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: pat:Patl_3042 flagellar hook-length control protein YP_004433516.1 PFAM: flagellar basal body-associated protein FliL; KEGG: pat:Patl_3041 flagellar basal body-associated protein FliL YP_004433517.1 KEGG: pat:Patl_3040 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein YP_004433518.1 KEGG: pat:Patl_3039 flagellar motor switch protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein YP_004433519.1 TIGRFAM: flagellar biosynthetic protein FliO; KEGG: pat:Patl_3038 flagellar biosynthesis protein, FliO YP_004433520.1 KEGG: pat:Patl_3037 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein YP_004433521.1 KEGG: pat:Patl_3036 flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3 YP_004433522.1 KEGG: pat:Patl_3035 flagellar biosynthesis protein FliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein YP_004433523.1 KEGG: pat:Patl_3034 flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter YP_004433524.1 KEGG: pat:Patl_3033 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein YP_004433525.1 TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; KEGG: pat:Patl_3032 GTP-binding signal recognition particle; SMART: AAA ATPase YP_004433526.1 KEGG: pat:Patl_3031 cobyrinic acid a,c-diamide synthase YP_004433527.1 KEGG: pat:Patl_3030 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein YP_004433528.1 KEGG: pat:Patl_3029 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004433529.1 PFAM: Chemotaxis phosphatase CheZ; KEGG: pat:Patl_3028 chemotaxis phosphatase, CheZ YP_004433530.1 KEGG: pat:Patl_3027 CheA signal transduction histidine kinases; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein YP_004433531.1 KEGG: pat:Patl_3026 chemotaxis-specific methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver YP_004433532.1 KEGG: pat:Patl_3025 cobyrinic acid a,c-diamide synthase YP_004433533.1 KEGG: pat:Patl_3024 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004433534.1 KEGG: pat:Patl_3023 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004433535.1 KEGG: pat:Patl_3022 hypothetical protein YP_004433536.1 TIGRFAM: homoserine O-succinyltransferase; KEGG: pat:Patl_3021 homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_004433537.1 PFAM: homocysteine S-methyltransferase; KEGG: amc:MADE_02860 B12-dependent methionine synthase YP_004433538.1 TIGRFAM: methionine synthase; KEGG: amc:MADE_02859 B12-dependent methionine synthase; PFAM: Vitamin B12 dependent methionine synthase activation region; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein YP_004433539.1 PFAM: protein of unknown function DUF938; KEGG: pat:Patl_3018 hypothetical protein YP_004433540.1 PFAM: protein of unknown function DUF482; KEGG: pat:Patl_3017 hypothetical protein YP_004433541.1 PFAM: regulatory protein RecX; KEGG: pat:Patl_3016 regulatory protein RecX YP_004433542.1 KEGG: pat:Patl_3015 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1 YP_004433543.1 KEGG: pat:Patl_3014 carbon storage regulator, CsrA; TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator YP_004433544.1 KEGG: pat:Patl_3013 sodium pump decarboxylases, gamma subunit; TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit YP_004433545.1 KEGG: pat:Patl_3012 oxaloacetate decarboxylase; TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: Conserved carboxylase region; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein YP_004433546.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; KEGG: pat:Patl_3011 sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_004433547.1 KEGG: pat:Patl_3010 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004433548.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: pat:Patl_3009 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: AAA ATPase YP_004433549.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_3008 binding-protein-dependent transport systems inner membrane component YP_004433550.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_3007 binding-protein-dependent transport systems inner membrane component YP_004433551.1 PFAM: extracellular solute-binding protein family 5; KEGG: pat:Patl_3006 extracellular solute-binding protein YP_004433552.1 TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; KEGG: pat:Patl_3005 sigma-54 dependent trancsriptional regulator; SMART: AAA ATPase YP_004433553.1 KEGG: pat:Patl_3004 phage shock protein A, PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein YP_004433554.1 KEGG: pat:Patl_3003 phage shock protein B; TIGRFAM: phage shock protein B; PFAM: shock B family protein YP_004433555.1 KEGG: pat:Patl_3002 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein YP_004433556.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: pat:Patl_3001 protein of unknown function DUF463, YcjX-like protein YP_004433557.1 PFAM: Uncharacterised protein family UPF0283; KEGG: pat:Patl_3000 hypothetical protein YP_004433558.1 TIGRFAM: phenylalanine-4-hydroxylase; KEGG: pat:Patl_2999 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase-like YP_004433559.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; amino acid-binding ACT domain protein; KEGG: pat:Patl_2998 transcriptional regulator, TyrR; SMART: AAA ATPase; PAS domain containing protein YP_004433560.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: pat:Patl_2997 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004433561.1 KEGG: pat:Patl_2996 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004433562.1 PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: pat:Patl_2995 Glu/Leu/Phe/Val dehydrogenase, dimerisation region YP_004433563.1 PFAM: Late competence development protein ComFB; KEGG: pat:Patl_2994 hypothetical protein YP_004433564.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2993 TonB-dependent receptor YP_004433565.1 PFAM: sulfotransferase; KEGG: pat:Patl_2992 tetratricopeptide TPR_2 YP_004433566.1 PFAM: Methyltransferase type 11; KEGG: pat:Patl_2991 methyltransferase type 11 YP_004433567.1 KEGG: saz:Sama_1117 hypothetical protein YP_004433568.1 KEGG: pat:Patl_2990 hypothetical protein YP_004433569.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2989 MotA/TolQ/ExbB proton channel YP_004433570.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2988 MotA/TolQ/ExbB proton channel YP_004433571.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_2987 biopolymer transport protein ExbD/TolR YP_004433572.1 KEGG: pat:Patl_2986 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004433573.1 KEGG: pat:Patl_2985 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat YP_004433574.1 KEGG: pat:Patl_2984 hypothetical protein YP_004433575.1 KEGG: pat:Patl_2983 heat shock protein 70 family protein YP_004433576.1 KEGG: pat:Patl_2982 hypothetical protein YP_004433577.1 PFAM: protein of unknown function DUF81; KEGG: pat:Patl_2981 hypothetical protein YP_004433578.1 KEGG: pat:Patl_2980 hypothetical protein; TIGRFAM: Protein of unknown function DUF2196; PFAM: Protein of unknown function DUF2196 YP_004433579.1 KEGG: pat:Patl_2978 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004433580.1 KEGG: saq:Sare_0367 ornithine cyclodeaminase/mu-crystallin YP_004433581.1 KEGG: nml:Namu_2828 1-aminocyclopropane-1-carboxylate deaminase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004433582.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; TIGRFAM: endonuclease III; KEGG: pat:Patl_2971 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop YP_004433583.1 KEGG: pat:Patl_2970 electron transport complex RsxE subunit; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit YP_004433584.1 KEGG: pat:Patl_2969 electron transport complex, RnfABCDGE type, G subunit; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein YP_004433585.1 KEGG: pat:Patl_2968 electron transport complex protein RnfD; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein YP_004433586.1 KEGG: pat:Patl_2967 electron transport complex, RnfABCDGE type, C subunit; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain YP_004433587.1 KEGG: pat:Patl_2966 electron transport complex protein RnfB; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster domain protein YP_004433588.1 KEGG: pat:Patl_2965 electron transport complex, RnfABCDGE type, A subunit; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit YP_004433589.1 KEGG: pat:Patl_2964 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004433590.1 TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; KEGG: pat:Patl_2963 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase domain protein YP_004433591.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_2962 LysR family transcriptional regulator YP_004433592.1 KEGG: pha:PSHAa0052 sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004433593.1 KEGG: pat:Patl_2961 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like YP_004433594.1 PFAM: Radical SAM domain protein; KEGG: pat:Patl_2960 radical SAM family protein YP_004433595.1 KEGG: pat:Patl_2959 hypothetical protein YP_004433596.1 KEGG: pat:Patl_2958 hypothetical protein YP_004433597.1 KEGG: pat:Patl_2957 zinc-binding alcohol dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004433598.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2956 short-chain dehydrogenase/reductase SDR YP_004433599.1 KEGG: pat:Patl_2955 asparagine synthetase B; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004433600.1 PFAM: peptidase M28; KEGG: pat:Patl_2954 peptidase M28 YP_004433601.1 KEGG: pat:Patl_2953 hypothetical protein YP_004433602.1 KEGG: pat:Patl_2952 hypothetical protein YP_004433603.1 KEGG: pat:Patl_2951 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004433604.1 KEGG: pat:Patl_2950 ABC-type Na+ efflux pump, permease component YP_004433605.1 PFAM: protein of unknown function DUF72; KEGG: pat:Patl_2949 hypothetical protein YP_004433606.1 KEGG: pat:Patl_2948 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein YP_004433607.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_2947 dATP pyrophosphohydrolase YP_004433608.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: pat:Patl_2946 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_004433609.1 KEGG: pat:Patl_2945 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein YP_004433610.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; KEGG: pat:Patl_2944 Holliday junction DNA helicase RuvB; SMART: AAA ATPase YP_004433611.1 KEGG: pat:Patl_2943 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein YP_004433612.1 KEGG: pat:Patl_2942 MotA/TolQ/ExbB proton channel; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel YP_004433613.1 KEGG: pat:Patl_2941 biopolymer transport protein ExbD/TolR; TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR YP_004433614.1 KEGG: pat:Patl_2940 hypothetical protein; TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA YP_004433615.1 KEGG: pat:Patl_2939 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain-containing protein; WD40-like beta Propeller containing protein YP_004433616.1 KEGG: pat:Patl_2938 OmpA/MotB; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein YP_004433617.1 TIGRFAM: tol-pal system protein YbgF; KEGG: pat:Patl_2937 tetratricopeptide TPR_2 YP_004433618.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pat:Patl_2936 signal transduction protein YP_004433619.1 KEGG: pat:Patl_2935 TesB family acyl-CoA thioesterase YP_004433620.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2934 major facilitator transporter YP_004433621.1 KEGG: pat:Patl_2933 alpha/beta hydrolase fold YP_004433622.1 KEGG: pat:Patl_2932 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase YP_004433623.1 PFAM: Polyketide cyclase/dehydrase; KEGG: pat:Patl_2931 hypothetical protein YP_004433624.1 KEGG: pat:Patl_2930 hypothetical protein YP_004433625.1 PFAM: pyruvate carboxyltransferase; KEGG: pat:Patl_2929 pyruvate carboxyltransferase YP_004433626.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: pat:Patl_2928 carbamoyl-phosphate synthase L chain, ATP-binding YP_004433627.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_2927 enoyl-CoA hydratase/isomerase YP_004433628.1 KEGG: pat:Patl_2926 propionyl-CoA carboxylase; PFAM: carboxyl transferase YP_004433629.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_2925 isovaleryl-CoA dehydrogenase YP_004433630.1 KEGG: pat:Patl_2924 MerR family transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004433631.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: pat:Patl_2923 acetyl-CoA acetyltransferases; PFAM: Thiolase-like YP_004433632.1 KEGG: pat:Patl_2922 lipase/esterase YP_004433633.1 KEGG: pat:Patl_2921 kynureninase; TIGRFAM: kynureninase; PFAM: aminotransferase class V YP_004433634.1 KEGG: pat:Patl_2920 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; Tetratricopeptide repeat YP_004433635.1 KEGG: pat:Patl_2919 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004433636.1 KEGG: pat:Patl_2918 hypothetical protein YP_004433637.1 PFAM: protein of unknown function DUF1289; KEGG: cps:CPS_0317 hypothetical protein YP_004433638.1 PFAM: dihydrouridine synthase DuS; KEGG: pat:Patl_2915 dihydrouridine synthase, DuS YP_004433639.1 KEGG: lif:LinJ23.1670 hypothetical protein YP_004433640.1 KEGG: pat:Patl_2914 arylesterase; PFAM: lipolytic protein G-D-S-L family YP_004433641.1 KEGG: pat:Patl_2913 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004433642.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2912 hypothetical protein YP_004433643.1 PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: pat:Patl_2911 hypothetical protein YP_004433644.1 PFAM: dihydroneopterin aldolase; KEGG: pat:Patl_2910 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_004433645.1 PFAM: protein of unknown function UPF0118; KEGG: pat:Patl_2909 hypothetical protein YP_004433646.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: swp:swp_4301 short chain dehydrogenase YP_004433647.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sse:Ssed_3614 LysR family transcriptional regulator YP_004433648.1 SMART: GGDEF domain containing protein; manually curated; TIGRFAM: diguanylate cyclase; KEGG: pat:Patl_0480 diguanylate cyclase; PFAM: GGDEF domain containing protein YP_004433649.1 KEGG: pat:Patl_2901 hypothetical protein YP_004433650.1 PFAM: protein of unknown function DUF692; KEGG: pat:Patl_2900 hypothetical protein YP_004433651.1 PFAM: Protein of unknown function DUF2063; KEGG: pat:Patl_2899 hypothetical protein YP_004433652.1 KEGG: pat:Patl_2898 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004433653.1 TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; KEGG: pat:Patl_2897 DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase YP_004433654.1 PFAM: Uncharacterised protein family UPF0133; KEGG: pat:Patl_2896 hypothetical protein YP_004433655.1 TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; KEGG: pat:Patl_2895 recombination protein RecR; SMART: Toprim sub domain-containing protein YP_004433656.1 KEGG: pat:Patl_2894 heat shock protein 90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004433657.1 KEGG: pat:Patl_2893 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein YP_004433658.1 KEGG: pat:Patl_2892 uncharacterized relative of glutathione S-transferase YP_004433659.1 PFAM: heat shock protein Hsp20; KEGG: pat:Patl_2891 heat shock protein HSP20 YP_004433660.1 PFAM: YceI family protein; KEGG: pat:Patl_2890 hypothetical protein YP_004433661.1 KEGG: pat:Patl_2889 cytochrome b561 YP_004433662.1 KEGG: pat:Patl_2888 phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-AMP cyclohydrolase YP_004433663.1 KEGG: pat:Patl_2887 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein YP_004433664.1 TIGRFAM: branched-chain amino acid aminotransferase; KEGG: pat:Patl_2886 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV YP_004433665.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: pat:Patl_2885 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein YP_004433666.1 KEGG: pat:Patl_2884 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I YP_004433667.1 TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pat:Patl_2883 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; PFAM: imidazoleglycerol-phosphate dehydratase YP_004433668.1 KEGG: pat:Patl_2882 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II YP_004433669.1 TIGRFAM: histidinol dehydrogenase; KEGG: pat:Patl_2881 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_004433670.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: pat:Patl_2880 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; Histidine biosynthesis protein HisG domain YP_004433671.1 KEGG: pat:Patl_2879 hypothetical protein YP_004433672.1 KEGG: pat:Patl_2878 hypothetical protein YP_004433673.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_2877 aldehyde reductase YP_004433674.1 KEGG: pat:Patl_2876 SyrP protein YP_004433675.1 PFAM: Uncharacterised protein family UPF0324; KEGG: pat:Patl_2875 hypothetical protein YP_004433676.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pat:Patl_2874 twin-arginine translocation pathway signal YP_004433677.1 KEGG: pat:Patl_2873 hypothetical protein YP_004433678.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_2872 TetR family transcriptional regulator YP_004433679.1 KEGG: pat:Patl_2871 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004433680.1 KEGG: pat:Patl_2870 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004433681.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_2869 acriflavin resistance protein YP_004433682.1 KEGG: pat:Patl_2868 MerR family transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004433683.1 PFAM: cation efflux protein; KEGG: pat:Patl_2867 cation efflux protein YP_004433684.1 KEGG: pat:Patl_2866 hypothetical protein YP_004433685.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2865 TonB-dependent receptor YP_004433686.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: pat:Patl_2864 TRAP dicarboxylate transporter-DctP subunit YP_004433687.1 KEGG: pat:Patl_2863 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004433688.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pat:Patl_2862 tripartite ATP-independent periplasmic transporter DctQ YP_004433689.1 PFAM: glycoside hydrolase family 31; KEGG: pat:Patl_2861 glycoside hydrolase family protein YP_004433690.1 KEGG: pat:Patl_1458 hypothetical protein YP_004433691.1 KEGG: cyc:PCC7424_4935 transport-associated YP_004433692.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: amc:MADE_00151 response regulator containing a CheY-like receiver domain and a GGDEF domain; SMART: GGDEF domain containing protein YP_004433693.1 KEGG: sbn:Sbal195_1727 hypothetical protein YP_004433694.1 KEGG: pat:Patl_1460 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD YP_004433695.1 PFAM: Protein of unknown function DUF2241; KEGG: pat:Patl_1461 hypothetical protein YP_004433696.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_1462 enoyl-CoA hydratase/isomerase YP_004433697.1 KEGG: pat:Patl_1463 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004433698.1 KEGG: pat:Patl_1464 hypothetical protein YP_004433699.1 KEGG: pat:Patl_1465 hypothetical protein YP_004433700.1 KEGG: pat:Patl_0907 hypothetical protein YP_004433701.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433702.1 KEGG: mfa:Mfla_1449 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I YP_004433703.1 KEGG: mfa:Mfla_1448 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_004433704.1 PFAM: cytochrome c oxidase subunit III; KEGG: mfa:Mfla_1447 cytochrome c oxidase, subunit III YP_004433705.1 KEGG: mmr:Mmar10_0151 hypothetical protein YP_004433706.1 PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: sus:Acid_6905 hypothetical protein YP_004433707.1 KEGG: hse:Hsero_2308 cytochrome c1 protein YP_004433708.1 KEGG: bpt:Bpet3212 hypothetical protein YP_004433709.1 KEGG: sde:Sde_2651 ATPase; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_004433710.1 PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: pat:Patl_1475 FG-GAP YP_004433711.1 KEGG: fal:FRAAL3843 hypothetical protein YP_004433712.1 PFAM: Endoribonuclease L-PSP; KEGG: pat:Patl_1477 endoribonuclease L-PSP YP_004433713.1 PFAM: aminotransferase class V; KEGG: pat:Patl_1478 twin-arginine translocation pathway signal YP_004433714.1 TIGRFAM: 2-isopropylmalate synthase; KEGG: pat:Patl_1479 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein YP_004433715.1 KEGG: pat:Patl_1480 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; regulatory protein MarR; SMART: Transcription regulator AsnC-type YP_004433716.1 KEGG: pat:Patl_1482 hypothetical protein YP_004433717.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_1483 lysine exporter protein LysE/YggA YP_004433718.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: reh:H16_B1922 LysR family transcriptional regulator YP_004433719.1 PFAM: Pirin domain protein; KEGG: mms:mma_2813 pirin-like protein YP_004433720.1 KEGG: sfr:Sfri_3066 hypothetical protein YP_004433721.1 KEGG: cai:Caci_8402 NmrA family protein YP_004433722.1 KEGG: ana:all1149 hypothetical protein YP_004433724.1 KEGG: bcv:Bcav_1816 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: Helix-turn-helix, AraC domain YP_004433725.1 PFAM: beta-lactamase; KEGG: pzu:PHZ_c1525 beta-lactamase class C YP_004433726.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsa:Desal_1940 GCN5-related N-acetyltransferase YP_004433727.1 KEGG: kko:Kkor_1764 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004433728.1 PFAM: aminotransferase class I and II; KEGG: pat:Patl_1485 aminotransferase, class I and II YP_004433729.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_1486 TonB-dependent receptor, plug YP_004433730.1 KEGG: pat:Patl_1487 hypothetical protein YP_004433731.1 PFAM: periplasmic binding protein; KEGG: pat:Patl_1488 periplasmic binding protein YP_004433732.1 PFAM: transport system permease protein; KEGG: pat:Patl_1489 transport system permease protein YP_004433733.1 KEGG: pat:Patl_1490 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004433734.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pat:Patl_1491 pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_004433735.1 PFAM: glycoside hydrolase family 24; KEGG: pat:Patl_1492 glycoside hydrolase family protein YP_004433736.1 PFAM: Ion transport 2 domain protein; KEGG: pat:Patl_1493 ion transport 2 YP_004433737.1 KEGG: npu:Npun_F3836 transcriptional regulator YP_004433738.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: swd:Swoo_0799 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004433739.1 KEGG: pat:Patl_1494 hypothetical protein YP_004433740.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433741.1 KEGG: mar:MAE_49060 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1555; coagulation factor 5/8 type domain protein YP_004433742.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_2239 GCN5-related N-acetyltransferase YP_004433743.1 KEGG: pat:Patl_1501 peptidase-like; PFAM: peptidase domain protein; SMART: PKD domain containing protein YP_004433744.1 KEGG: pat:Patl_1502 hypothetical protein YP_004433745.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_1503 tetratricopeptide TPR_2 YP_004433746.1 PFAM: protein of unknown function DUF1330; KEGG: pat:Patl_1504 hypothetical protein YP_004433747.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pat:Patl_1505 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004433748.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_1506 aldehyde dehydrogenase YP_004433749.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1507 major facilitator transporter YP_004433750.1 PFAM: YCII-related; KEGG: pat:Patl_1508 YciI-like protein YP_004433751.1 KEGG: pat:Patl_1509 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain-containing protein; SMART: regulatory protein GntR HTH YP_004433752.1 PFAM: MmgE/PrpD family protein; KEGG: pat:Patl_1510 MmgE/PrpD YP_004433753.1 PFAM: MmgE/PrpD family protein; KEGG: pat:Patl_1511 MmgE/PrpD YP_004433754.1 KEGG: pat:Patl_1512 coenzyme F390 synthetase-like YP_004433755.1 PFAM: Amidase; KEGG: pat:Patl_1513 amidase YP_004433756.1 KEGG: pat:Patl_2769 hypothetical protein YP_004433757.1 KEGG: pat:Patl_2768 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004433758.1 PFAM: FAD linked oxidase domain protein; KEGG: pat:Patl_2767 FAD linked oxidase-like YP_004433759.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_2766 alpha/beta hydrolase fold YP_004433760.1 PFAM: aconitate hydratase domain-containing protein; KEGG: pat:Patl_2765 isopropylmalate isomerase large subunit YP_004433761.1 KEGG: pat:Patl_2764 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain-containing protein YP_004433762.1 KEGG: dya:Dyak_GE20234 GE20234 gene product from transcript GE20234-RA YP_004433763.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pat:Patl_2763 L-carnitine dehydratase/bile acid-inducible protein F YP_004433764.1 PFAM: pyruvate carboxyltransferase; KEGG: pat:Patl_2762 pyruvate carboxyltransferase YP_004433765.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: pat:Patl_2761 carboxymuconolactone decarboxylase YP_004433766.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_2760 glutathione S-transferase-like YP_004433767.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pat:Patl_2759 zinc-binding alcohol dehydrogenase YP_004433768.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_2758 PEP motif-containing protein YP_004433769.1 KEGG: pat:Patl_2757 hypothetical protein YP_004433771.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_2756 TonB-dependent receptor, plug YP_004433772.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_2755 hypothetical protein YP_004433773.1 KEGG: pat:Patl_2754 hypothetical protein YP_004433774.1 KEGG: pat:Patl_2753 hypothetical protein YP_004433775.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_2752 enoyl-CoA hydratase/isomerase YP_004433776.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2751 hypothetical protein YP_004433777.1 PFAM: protein of unknown function DUF1838; KEGG: pat:Patl_2750 periplasmic protein, function unknown YP_004433778.1 KEGG: ttu:TERTU_0121 hypothetical protein YP_004433779.1 KEGG: cbt:CLH_1675 SWI/SNF family helicase YP_004433780.1 KEGG: dme:Dmel_CG33017 CG33017 gene product from transcript CG33017-RB YP_004433781.1 KEGG: npu:Npun_R0669 binding-protein-dependent transport systems inner membrane component YP_004433783.1 KEGG: pat:Patl_2735 hypothetical protein YP_004433784.1 PFAM: polysaccharide deacetylase; KEGG: pat:Patl_2734 polysaccharide deacetylase YP_004433785.1 PFAM: polysaccharide deacetylase; KEGG: pat:Patl_2733 polysaccharide deacetylase YP_004433786.1 PFAM: isochorismatase hydrolase; KEGG: pat:Patl_2732 isochorismatase hydrolase YP_004433787.1 KEGG: pat:Patl_2731 hypothetical protein YP_004433788.1 PFAM: Methyltransferase type 12; KEGG: pat:Patl_2730 methyltransferase type 12 YP_004433789.1 KEGG: pat:Patl_2729 hypothetical protein YP_004433790.1 KEGG: pat:Patl_2728 hypothetical protein YP_004433791.1 KEGG: pat:Patl_2727 hypothetical protein YP_004433792.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_2726 hypothetical protein YP_004433793.1 KEGG: amr:AM1_C0015 hypothetical protein YP_004433794.1 KEGG: tma:TM0025 beta-glucosidase YP_004433795.1 manually curated; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; KEGG: pat:Patl_2723 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase YP_004433796.1 KEGG: pat:Patl_2722 hypothetical protein YP_004433797.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433798.1 KEGG: pat:Patl_2720 hypothetical protein YP_004433799.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2719 short-chain dehydrogenase/reductase SDR YP_004433800.1 KEGG: pat:Patl_2718 polysaccharide deacetylase; PFAM: polysaccharide deacetylase YP_004433801.1 KEGG: pat:Patl_2717 citrate lyase; PFAM: HpcH/HpaI aldolase YP_004433802.1 PFAM: MaoC domain protein dehydratase; KEGG: pat:Patl_2716 MaoC-like dehydratase YP_004433803.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_2715 acyl-CoA dehydrogenase-like YP_004433804.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pat:Patl_2714 L-carnitine dehydratase/bile acid-inducible protein F YP_004433805.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pat:Patl_2713 alpha-methylacyl-CoA racemase YP_004433806.1 PFAM: protein of unknown function DUF1001; KEGG: pat:Patl_2712 hypothetical protein YP_004433807.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_2711 TonB-dependent receptor, plug YP_004433808.1 PFAM: amine oxidase; KEGG: pat:Patl_2710 twin-arginine translocation pathway signal YP_004433809.1 PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: pat:Patl_2709 hypothetical protein YP_004433810.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pat:Patl_2708 ethyl tert-butyl ether degradation EthD YP_004433811.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2706 hypothetical protein YP_004433812.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_2705 alpha/beta hydrolase fold YP_004433813.1 PFAM: AFG1-family ATPase; KEGG: pat:Patl_2704 AFG1-like ATPase YP_004433814.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_2701 TonB-dependent receptor, plug YP_004433815.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_2700 glyoxalase/bleomycin resistance protein/dioxygenase YP_004433816.1 KEGG: pat:Patl_2699 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding YP_004433817.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_2698 glyoxalase/bleomycin resistance protein/dioxygenase YP_004433818.1 KEGG: pat:Patl_2697 hypothetical protein YP_004433819.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_2696 GCN5-related N-acetyltransferase YP_004433820.1 PFAM: sulfatase; KEGG: pat:Patl_2695 sulfatase YP_004433821.1 KEGG: pat:Patl_2694 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor YP_004433822.1 KEGG: pat:Patl_2693 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004433823.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: pat:Patl_2692 twin-arginine translocation pathway signal YP_004433824.1 KEGG: pat:Patl_2691 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004433825.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pat:Patl_2690 oxidoreductase-like YP_004433826.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; AP endonuclease 2 domain protein; KEGG: pat:Patl_2689 xylose isomerase-like TIM barrel YP_004433827.1 KEGG: pat:Patl_2688 nucleoside:H+ symporter YP_004433828.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: pat:Patl_2687 twin-arginine translocation pathway signal YP_004433829.1 PFAM: FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase YP_004433830.1 KEGG: pat:Patl_2685 twin-arginine translocation pathway signal YP_004433831.1 PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_2684 hypothetical protein YP_004433832.1 KEGG: pat:Patl_2683 SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004433833.1 KEGG: pat:Patl_2682 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004433834.1 KEGG: pat:Patl_2681 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004433835.1 KEGG: pat:Patl_2680 major facilitator transporter YP_004433836.1 KEGG: pat:Patl_2679 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_004433837.1 KEGG: pat:Patl_2666 D-cysteine desulfhydrase; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004433838.1 KEGG: pat:Patl_2663 hypothetical protein YP_004433839.1 KEGG: pat:Patl_2662 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_004433840.1 KEGG: pat:Patl_2661 HlyD family type I secretion membrane fusion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein YP_004433841.1 TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: pat:Patl_2660 ABC transporter related; SMART: AAA ATPase YP_004433842.1 KEGG: pat:Patl_2659 TolC family type I secretion outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein YP_004433843.1 KEGG: pat:Patl_2658 hypothetical protein YP_004433844.1 PFAM: glycoside hydrolase family 10; KEGG: pat:Patl_2657 endo-1,4-beta-xylanase; SMART: glycoside hydrolase family 10 YP_004433845.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_2656 LysR family transcriptional regulator YP_004433846.1 KEGG: pat:Patl_2655 glyoxalase/bleomycin resistance protein/dioxygenase; TIGRFAM: lactoylglutathione lyase family protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004433847.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_2651 LysR family transcriptional regulator YP_004433848.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: pat:Patl_2650 ThiJ/PfpI YP_004433849.1 KEGG: pat:Patl_2649 hypothetical protein YP_004433850.1 KEGG: pat:Patl_2648 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_004433851.1 KEGG: pat:Patl_2647 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004433852.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_2646 mandelate racemase/muconate lactonizing-like protein YP_004433853.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2645 major facilitator transporter YP_004433854.1 PFAM: PfkB domain protein; KEGG: pat:Patl_2644 PfkB YP_004433855.1 PFAM: KDPG and KHG aldolase; KEGG: pat:Patl_2643 KDPG and KHG aldolase YP_004433856.1 KEGG: pat:Patl_2642 agarase YP_004433857.1 KEGG: pat:Patl_2641 gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein YP_004433858.1 KEGG: pat:Patl_2640 agarase; PFAM: Glycoside hydrolase family 42 domain protein YP_004433859.1 KEGG: pat:Patl_2639 zinc-binding alcohol dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004433860.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_2638 TetR family transcriptional regulator YP_004433861.1 KEGG: pat:Patl_2637 zinc-binding alcohol dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004433862.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_2636 GCN5-related N-acetyltransferase YP_004433863.1 TIGRFAM: lactoylglutathione lyase; KEGG: pat:Patl_2635 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004433864.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: pat:Patl_2633 2OG-Fe(II) oxygenase YP_004433865.1 KEGG: pat:Patl_2634 hypothetical protein YP_004433866.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_2617 hypothetical protein YP_004433867.1 PFAM: metal-dependent protein hydrolase; KEGG: pat:Patl_2621 metal-dependent protein hydrolase YP_004433868.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2619 short chain dehydrogenase YP_004433869.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_2618 LysR family transcriptional regulator YP_004433870.1 KEGG: pat:Patl_2628 cold-shock DNA-binding domain-containing protein; PFAM: protein of unknown function DUF1294; Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004433871.1 KEGG: pat:Patl_2615 hypothetical protein YP_004433872.1 PFAM: beta-lactamase; KEGG: ava:Ava_1520 beta-lactamase YP_004433873.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rde:RD1_0815 hypothetical protein YP_004433874.1 KEGG: sli:Slin_5720 hypothetical protein YP_004433875.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cps:CPS_2531 LysR family transcriptional regulator YP_004433876.1 PFAM: Patatin; KEGG: pat:Patl_2613 patatin YP_004433877.1 KEGG: pat:Patl_2612 5-carboxymethyl-2-hydroxymuconate delta isomerase YP_004433878.1 KEGG: pat:Patl_2611 hypothetical protein YP_004433879.1 KEGG: pat:Patl_2610 twin arginine-targeting protein translocase; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_004433880.1 KEGG: pat:Patl_2609 hypothetical protein YP_004433881.1 KEGG: pat:Patl_2608 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_004433882.1 PFAM: protein of unknown function DUF839; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: pat:Patl_2607 twin-arginine translocation pathway signal YP_004433883.1 KEGG: pat:Patl_2606 hypothetical protein YP_004433884.1 KEGG: pat:Patl_2603 hypothetical protein YP_004433885.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pat:Patl_2602 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_004433886.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: pat:Patl_2601 (2Fe-2S)-binding YP_004433887.1 KEGG: pat:Patl_2600 hypothetical protein YP_004433888.1 KEGG: pat:Patl_2599 SNF2-related; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004433889.1 KEGG: pat:Patl_2597 hypothetical protein YP_004433890.1 KEGG: swp:swp_4309 hypothetical protein YP_004433891.1 KEGG: lsa:LSA0170 general stress protein YP_004433892.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433893.1 manually curated; KEGG: maq:Maqu_3850 virulence gene repressor RsaL YP_004433894.1 KEGG: swd:Swoo_4821 hypothetical protein YP_004433895.1 KEGG: pat:Patl_2589 transcriptional regulator BetI; TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR YP_004433896.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_2588 betaine aldehyde dehydrogenase YP_004433897.1 KEGG: pat:Patl_2587 choline dehydrogenase; TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase YP_004433898.1 PFAM: BCCT transporter; KEGG: pat:Patl_2586 quaternary ammonium permease YP_004433899.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2585 TonB-dependent receptor YP_004433900.1 KEGG: pat:Patl_2584 hypothetical protein YP_004433901.1 KEGG: sbp:Sbal223_4361 hypothetical protein YP_004433902.1 manually curated; KEGG: amc:MADE_00943 hypothetical protein YP_004433903.1 manually curated; KEGG: syp:SYNPCC7002_E0015 hypothetical protein YP_004433904.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: mxa:MXAN_1751 isoquinoline 1-oxidoreductase, alpha subunit YP_004433905.1 KEGG: amd:AMED_2992 isoquinoline 1-oxidoreductase beta subunit YP_004433906.1 manually curated; PFAM: regulatory protein MerR; KEGG: bmr:BMI_II223 transcriptionnal regulator, MerR family; SMART: regulatory protein MerR YP_004433907.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sfr:Sfri_2441 NADH:flavin oxidoreductase/NADH oxidase YP_004433908.1 PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_3360 major facilitator transporter YP_004433909.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_4950 LysR family transcriptional regulator YP_004433910.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swi:Swit_0964 TonB-dependent receptor YP_004433911.1 PFAM: sulfatase; KEGG: tmz:Tmz1t_3870 sulfatase YP_004433912.1 KEGG: pat:Patl_1739 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein YP_004433913.1 PFAM: cyclase/dehydrase; KEGG: pat:Patl_1740 cyclase/dehydrase YP_004433914.1 PFAM: protein of unknown function UPF0125; KEGG: pat:Patl_1741 hypothetical protein YP_004433915.1 PFAM: Conserved hypothetical protein CHP02453; KEGG: pat:Patl_1742 hypothetical protein YP_004433916.1 PFAM: protein of unknown function DUF299; KEGG: pat:Patl_1743 hypothetical protein YP_004433917.1 KEGG: pat:Patl_1744 phosphoenolpyruvate synthase; TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein YP_004433918.1 KEGG: pat:Patl_1745 hypothetical protein YP_004433919.1 PFAM: FAD linked oxidase domain protein; KEGG: pat:Patl_1746 FAD linked oxidase-like YP_004433920.1 KEGG: pat:Patl_1948 hypothetical protein YP_004433921.1 PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: pat:Patl_1748 acetyl-CoA hydrolase/transferase YP_004433922.1 PFAM: histone deacetylase superfamily; KEGG: pat:Patl_1749 histone deacetylase superfamily protein YP_004433923.1 KEGG: pat:Patl_2580 hypothetical protein YP_004433924.1 KEGG: pat:Patl_2579 response regulator receiver protein; PFAM: response regulator receiver; Tetratricopeptide TPR_1 repeat-containing protein; SMART: response regulator receiver; Tetratricopeptide repeat YP_004433925.1 KEGG: pat:Patl_2578 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase YP_004433926.1 PFAM: protein of unknown function DUF885; KEGG: pat:Patl_2577 hypothetical protein YP_004433927.1 PFAM: NADPH-dependent FMN reductase; KEGG: pat:Patl_2576 NADPH-dependent FMN reductase YP_004433928.1 KEGG: pat:Patl_2575 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_004433929.1 KEGG: pat:Patl_2573 hypothetical protein YP_004433930.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vcj:VCD_000979 oxidoreductase short-chain dehydrogenase/reductase family YP_004433931.1 PFAM: extracellular solute-binding protein family 1; KEGG: pat:Patl_2572 extracellular solute-binding protein YP_004433932.1 KEGG: pat:Patl_2571 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related YP_004433933.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: pat:Patl_2570 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_004433934.1 KEGG: pat:Patl_2569 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: Ribosomal protein L25-like YP_004433935.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_2568 MscS mechanosensitive ion channel YP_004433936.1 TIGRFAM: ribose-phosphate pyrophosphokinase; KEGG: pat:Patl_2567 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_004433937.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: pat:Patl_2566 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_004433938.1 KEGG: pat:Patl_2565 outer membrane lipoprotein LolB; TIGRFAM: outer membrane lipoprotein LolB; PFAM: outer membrane lipoprotein LolB YP_004433939.1 KEGG: pat:Patl_2564 shikimate/quinate 5-dehydrogenase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; Shikimate/quinate 5-dehydrogenase YP_004433940.1 KEGG: pat:Patl_2563 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein YP_004433941.1 KEGG: pat:Patl_2562 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_004433942.1 KEGG: pat:Patl_2561 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; response regulator receiver; SMART: response regulator receiver YP_004433943.1 PFAM: Invasion gene expression up-regulator SirB; KEGG: pat:Patl_2560 invasion gene expression up-regulator, SirB YP_004433944.1 KEGG: pat:Patl_2559 hypothetical protein YP_004433945.1 KEGG: pat:Patl_2558 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III YP_004433946.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: pat:Patl_2557 biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein YP_004433947.1 KEGG: pat:Patl_2556 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II YP_004433948.1 PFAM: Methyltransferase type 11; KEGG: pat:Patl_2555 methyltransferase type 11 YP_004433949.1 TIGRFAM: dethiobiotin synthase; KEGG: pat:Patl_2554 dethiobiotin synthase YP_004433950.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ilo:IL1576 outer membrane protein YP_004433951.1 KEGG: hba:Hbal_1194 hypothetical protein YP_004433952.1 manually curated; KEGG: pat:Patl_1752 hypothetical protein YP_004433953.1 KEGG: pat:Patl_1753 NADPH:quinone reductase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004433954.1 PFAM: major royal jelly protein; KEGG: pat:Patl_1754 hypothetical protein YP_004433955.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_1755 redoxin YP_004433956.1 KEGG: pat:Patl_1756 exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, gamma subunit YP_004433957.1 KEGG: pat:Patl_1757 exodeoxyribonuclease V, beta subunit; TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase YP_004433958.1 KEGG: pat:Patl_1758 exodeoxyribonuclease V, alpha subunit; TIGRFAM: exodeoxyribonuclease V, alpha subunit YP_004433959.1 KEGG: pat:Patl_1759 hypothetical protein YP_004433960.1 KEGG: pat:Patl_1760 hypothetical protein YP_004433961.1 KEGG: pat:Patl_1761 orphan protein YP_004433962.1 KEGG: pat:Patl_1762 SufS subfamily cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; Fe-S metabolism associated SufE YP_004433963.1 PFAM: isochorismatase hydrolase; KEGG: pat:Patl_1763 isochorismatase hydrolase YP_004433964.1 PFAM: purine nucleoside permease; KEGG: pat:Patl_1764 purine nucleoside permease protein YP_004433965.1 KEGG: pat:Patl_1765 hypothetical protein YP_004433966.1 KEGG: pat:Patl_1766 hypothetical protein YP_004433967.1 KEGG: pat:Patl_1767 hypothetical protein YP_004433968.1 KEGG: pat:Patl_1768 hypothetical protein YP_004433969.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1769 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004433970.1 KEGG: pat:Patl_1770 glycosyltransferase YP_004433971.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1771 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004433972.1 KEGG: pat:Patl_1772 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein YP_004433973.1 KEGG: pat:Patl_1773 hypothetical protein YP_004433974.1 KEGG: pat:Patl_1774 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein YP_004433975.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region protein; KEGG: pat:Patl_1775 cell division protein ZipA; SMART: ZipA FtsZ-binding region protein YP_004433976.1 SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; TIGRFAM: DNA ligase, NAD-dependent; KEGG: pat:Patl_1776 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein YP_004433977.1 KEGG: pat:Patl_1777 hypothetical protein YP_004433978.1 PFAM: Protein of unknown function DUF2062; KEGG: pat:Patl_1778 hypothetical protein YP_004433979.1 KEGG: pat:Patl_1779 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein YP_004433980.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: pat:Patl_1780 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; SMART: AAA ATPase YP_004433981.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: pat:Patl_1781 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_004433982.1 PFAM: protein of unknown function DUF343; KEGG: pat:Patl_1782 hypothetical protein YP_004433983.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: pat:Patl_1783 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_004433984.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: amc:MADE_01860 short chain dehydrogenase family protein YP_004433985.1 TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; KEGG: pat:Patl_1784 D-cysteine desulfhydrase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004433986.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1785 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004433987.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1786 GCN5-related N-acetyltransferase YP_004433988.1 KEGG: pat:Patl_1787 hypothetical protein YP_004433989.1 KEGG: pat:Patl_1788 hypothetical protein YP_004433990.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_1789 LysR family transcriptional regulator YP_004433991.1 KEGG: pat:Patl_1790 hypothetical protein YP_004433992.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: pat:Patl_1791 UBA/ThiF-type NAD/FAD binding fold YP_004433993.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: pat:Patl_1792 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase YP_004433994.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: pat:Patl_1793 phosphomannomutase YP_004433995.1 KEGG: pat:Patl_1794 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_004433996.1 KEGG: pat:Patl_1795 succinate dehydrogenase, cytochrome b subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit YP_004433997.1 TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: pat:Patl_1796 succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC YP_004433998.1 KEGG: pat:Patl_1797 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_004433999.1 KEGG: pat:Patl_1798 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_004434000.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; KEGG: pat:Patl_1799 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase central region; dehydrogenase E1 component YP_004434001.1 KEGG: pat:Patl_1800 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein YP_004434002.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; KEGG: pat:Patl_1801 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase YP_004434003.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; KEGG: pat:Patl_1802 succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein YP_004434004.1 KEGG: pat:Patl_1803 peptidase S9, prolyl oligopeptidase active site region YP_004434005.1 KEGG: pat:Patl_1805 HxlR family transcriptional regulator; manually curated; PFAM: helix-turn-helix HxlR type YP_004434006.1 manually curated; PFAM: extracellular solute-binding protein family 3; KEGG: pat:Patl_1807 extracellular solute-binding protein; SMART: extracellular solute-binding protein family 3 YP_004434007.1 KEGG: pat:Patl_1808 luciferase-like; TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup YP_004434008.1 KEGG: pat:Patl_1809 peptidase E; PFAM: peptidase S51 dipeptidase E YP_004434009.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1810 TonB-dependent receptor YP_004434010.1 PFAM: Phosphoglycerate mutase; KEGG: pat:Patl_1811 phosphoglycerate mutase YP_004434011.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_1812 acyl-CoA dehydrogenase-like YP_004434012.1 PFAM: aminoglycoside phosphotransferase; KEGG: pat:Patl_1813 aminoglycoside phosphotransferase YP_004434013.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_1814 zinc-binding alcohol dehydrogenase YP_004434014.1 KEGG: pat:Patl_1815 hypothetical protein YP_004434015.1 KEGG: sfr:Sfri_2308 hypothetical protein YP_004434016.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: pat:Patl_1816 aspartyl/asparaginyl beta-hydroxylase YP_004434017.1 PFAM: protein of unknown function DUF924; KEGG: pat:Patl_1817 hypothetical protein YP_004434018.1 PFAM: WD40-like beta Propeller containing protein; KEGG: pat:Patl_1818 peptidase S9, prolyl oligopeptidase active site region YP_004434019.1 KEGG: cvi:CV_0390 hypothetical protein YP_004434020.1 PFAM: protein of unknown function UPF0153; KEGG: pat:Patl_1819 hypothetical protein YP_004434021.1 KEGG: sal:Sala_2359 peptidase M19, renal dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_004434022.1 KEGG: pat:Patl_1820 hypothetical protein YP_004434023.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_1822 TonB-dependent receptor, plug YP_004434024.1 KEGG: pat:Patl_1823 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI YP_004434025.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1824 major facilitator transporter YP_004434026.1 KEGG: pat:Patl_1825 alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37 YP_004434027.1 KEGG: pat:Patl_1827 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_004434028.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: pat:Patl_1828 carboxylesterase; PFAM: esterase YP_004434029.1 KEGG: pat:Patl_1829 alcohol dehydrogenase GroES-like protein; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein YP_004434030.1 KEGG: pat:Patl_1830 hypothetical protein YP_004434031.1 PFAM: amidohydrolase 2; KEGG: pat:Patl_1831 amidohydrolase 2 YP_004434032.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_1832 short-chain dehydrogenase/reductase SDR YP_004434033.1 KEGG: pat:Patl_1833 hypothetical protein YP_004434034.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; KEGG: pat:Patl_1834 MiaB-like tRNA modifying enzyme YliG; SMART: Elongator protein 3/MiaB/NifB YP_004434035.1 KEGG: pat:Patl_1838 hypothetical protein YP_004434036.1 KEGG: pat:Patl_1839 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_004434037.1 KEGG: sde:Sde_1175 agarase YP_004434038.1 KEGG: pat:Patl_1840 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434039.1 PFAM: sulfatase; KEGG: pat:Patl_1841 sulfatase YP_004434040.1 PFAM: sulfatase; KEGG: pat:Patl_1842 sulfatase YP_004434041.1 manually curated; KEGG: cts:Ctha_2621 H(+)-transporting two-sector ATPase YP_004434042.1 PFAM: plasmid maintenance system killer; KEGG: vfm:VFMJ11_A0657 plasmid maintenance system killer protein YP_004434043.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_3765 XRE family plasmid maintenance system antidote protein; SMART: helix-turn-helix domain protein YP_004434044.1 KEGG: spb:M28_Spy0620 uracil permease YP_004434045.1 KEGG: cps:CPS_0372 hypothetical protein YP_004434046.1 KEGG: smt:Smal_0120 hypothetical protein YP_004434047.1 TIGRFAM: prevent-host-death family protein; KEGG: mmw:Mmwyl1_1402 prevent-host-death family protein YP_004434048.1 KEGG: mmw:Mmwyl1_1401 addiction module antitoxin; TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB YP_004434049.1 PFAM: protein of unknown function UPF0157; KEGG: cps:CPS_2738 hypothetical protein YP_004434050.1 KEGG: pat:Patl_1388 hypothetical protein YP_004434051.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hba:Hbal_3072 glyoxalase/bleomycin resistance protein/dioxygenase YP_004434052.1 PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_1851 hypothetical protein YP_004434053.1 PFAM: protein of unknown function DUF303 acetylesterase; glycoside hydrolase family 2 sugar binding; KEGG: pat:Patl_1852 glycoside hydrolase family protein YP_004434054.1 KEGG: pat:Patl_1853 hypothetical protein YP_004434055.1 PFAM: YCII-related; KEGG: pat:Patl_1854 YciI-like protein YP_004434056.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein; KEGG: pat:Patl_1855 pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat YP_004434057.1 KEGG: pat:Patl_1856 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_004434058.1 KEGG: pat:Patl_1857 cytochrome c550 YP_004434059.1 KEGG: pat:Patl_1858 hypothetical protein YP_004434060.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: pat:Patl_1859 YVTN beta-propeller repeat-containing protein YP_004434061.1 KEGG: pat:Patl_1860 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434062.1 PFAM: ABC-2 type transporter; KEGG: pat:Patl_1861 ABC-2 type transporter YP_004434063.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1862 TonB-dependent receptor YP_004434064.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1863 TonB-dependent receptor YP_004434065.1 KEGG: pat:Patl_1864 sulfonate ABC transporter, periplasmic sulfonate-binding protein YP_004434066.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_1865 binding-protein-dependent transport systems inner membrane component YP_004434067.1 KEGG: pat:Patl_1866 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434068.1 KEGG: pat:Patl_1867 hypothetical protein YP_004434069.1 KEGG: pat:Patl_1868 hypothetical protein YP_004434070.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: pat:Patl_1869 ethyl tert-butyl ether degradation EthD YP_004434071.1 KEGG: pat:Patl_1870 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004434072.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: pat:Patl_1871 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver YP_004434073.1 PFAM: domain of unknown function DUF1745; FIST C domain; KEGG: pat:Patl_1872 hypothetical protein YP_004434074.1 PFAM: FMN-binding domain protein; KEGG: pat:Patl_1873 FMN-binding YP_004434075.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_1874 aldehyde dehydrogenase YP_004434076.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pat:Patl_1875 NAD-dependent epimerase/dehydratase YP_004434077.1 KEGG: pat:Patl_1876 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA YP_004434078.1 KEGG: pat:Patl_1877 hypothetical protein YP_004434079.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_1878 LysR family transcriptional regulator YP_004434080.1 KEGG: pat:Patl_1879 asparaginyl-tRNA synthetase; TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_004434081.1 KEGG: pat:Patl_1880 hypothetical protein YP_004434082.1 KEGG: pat:Patl_1881 hypothetical protein YP_004434083.1 KEGG: pat:Patl_1882 cysteine synthases; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004434084.1 KEGG: pat:Patl_1883 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004434085.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: pat:Patl_1884 Na+/H+ antiporter NhaC YP_004434086.1 TIGRFAM: gamma-glutamyltransferase; KEGG: pat:Patl_1885 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_004434087.1 KEGG: sfr:Sfri_2544 hypothetical protein YP_004434088.1 KEGG: sfr:Sfri_2543 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_004434089.1 KEGG: pha:PSHAa2977 secreted alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_004434090.1 KEGG: pat:Patl_1886 UDP-2,3-diacylglucosamine hydrolase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase YP_004434091.1 KEGG: pat:Patl_1887 peptidylprolyl isomerase; PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type YP_004434092.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: pat:Patl_1888 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_004434093.1 KEGG: pat:Patl_1893 glyoxalase/bleomycin resistance protein/dioxygenase; manually curated; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004434094.1 manually curated; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; KEGG: pat:Patl_1894 lytic transglycosylase, catalytic; SMART: Peptidoglycan-binding LysM YP_004434095.1 KEGG: pat:Patl_1895 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase YP_004434096.1 KEGG: pat:Patl_1896 hypothetical protein YP_004434097.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; KEGG: pat:Patl_1897 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein YP_004434098.1 PFAM: ATPase-like, ParA/MinD; KEGG: pat:Patl_1898 MRP family ATP-binding protein YP_004434099.1 KEGG: pat:Patl_1899 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase YP_004434100.1 KEGG: pat:Patl_1900 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004434101.1 PFAM: YHS domain-containing protein; KEGG: pat:Patl_1901 YHS YP_004434102.1 KEGG: pmc:P9515_00411 hypothetical protein YP_004434103.1 PFAM: protein of unknown function DUF1555; KEGG: tgr:Tgr7_2353 hypothetical protein YP_004434104.1 KEGG: pap:PSPA7_4229 hypothetical protein; manually curated; PFAM: Integrase catalytic region YP_004434105.1 PFAM: transposase IS3/IS911 family protein; KEGG: psp:PSPPH_3740 ISPsy24, transposase orfA YP_004434106.1 manually curated; KEGG: yen:YE1806 hypothetical protein YP_004434107.1 KEGG: acd:AOLE_09355 hypothetical protein YP_004434108.1 KEGG: gbr:Gbro_4050 histidine kinase HAMP region domain protein YP_004434109.1 PFAM: beta-lactamase; KEGG: pat:Patl_2616 beta-lactamase YP_004434110.1 PFAM: Thioredoxin domain-containing protein; KEGG: pat:Patl_1907 thioredoxin domain-containing protein YP_004434111.1 PFAM: protein of unknown function DUF885; KEGG: kko:Kkor_1817 protein of unknown function DUF885 YP_004434112.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_2553 betaine-aldehyde dehydrogenase YP_004434113.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2552 short-chain dehydrogenase/reductase SDR YP_004434114.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pat:Patl_2551 alcohol dehydrogenase GroES-like protein YP_004434115.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_2550 mandelate racemase/muconate lactonizing-like protein YP_004434116.1 KEGG: pat:Patl_2549 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH YP_004434117.1 KEGG: pat:Patl_2547 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434118.1 KEGG: pat:Patl_2546 tryptophan halogenase YP_004434119.1 PFAM: SapC family protein; KEGG: pat:Patl_2545 SapC YP_004434120.1 KEGG: pat:Patl_2544 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004434121.1 KEGG: pat:Patl_2543 hypothetical protein YP_004434122.1 KEGG: api:100168174 similar to AGAP004457-PA YP_004434123.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pat:Patl_2541 xanthine/uracil/vitamin C permease YP_004434124.1 KEGG: pat:Patl_2540 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3 YP_004434125.1 KEGG: pat:Patl_2538 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004434126.1 KEGG: pat:Patl_2537 molybdenum cofactor synthesis domain-containing protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV YP_004434127.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pat:Patl_2536 UBA/ThiF-type NAD/FAD binding fold YP_004434128.1 PFAM: GumN family protein; KEGG: pat:Patl_2535 GumN YP_004434129.1 KEGG: pat:Patl_2534 nitrite reductase (NAD(P)H), large subunit; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_004434130.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: pat:Patl_2533 nitrite reductase (NAD(P)H), small subunit YP_004434131.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pat:Patl_2532 molybdopterin oxidoreductase YP_004434132.1 TIGRFAM: uroporphyrin-III C-methyltransferase; KEGG: pat:Patl_2531 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_004434133.1 PFAM: Glycosyl transferase, family 3-like; KEGG: pat:Patl_2530 hypothetical protein YP_004434134.1 KEGG: pat:Patl_2529 response regulator receiver/ANTAR domain-containing protein; PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver YP_004434135.1 KEGG: pat:Patl_2528 nitrate transporter YP_004434136.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pat:Patl_2527 (acyl-carrier protein) phosphodiesterase YP_004434137.1 PFAM: glutathione peroxidase; KEGG: pat:Patl_2526 glutathione peroxidase YP_004434138.1 PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: pat:Patl_2525 peptidase S9, prolyl oligopeptidase active site region YP_004434139.1 KEGG: pat:Patl_2524 elongation factor P; TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein YP_004434140.1 KEGG: pat:Patl_2735 hypothetical protein YP_004434141.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pin:Ping_2150 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434142.1 TIGRFAM: TonB family protein; KEGG: pat:Patl_2439 hypothetical protein YP_004434143.1 KEGG: pat:Patl_2437 hypothetical protein YP_004434144.1 KEGG: pat:Patl_2436 hypothetical protein YP_004434145.1 KEGG: pat:Patl_2435 3-beta hydroxysteroid dehydrogenase/isomerase YP_004434146.1 PFAM: protein of unknown function DUF323; KEGG: pat:Patl_2434 hypothetical protein YP_004434147.1 KEGG: pat:Patl_2433 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260 YP_004434148.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_2432 glyoxalase/bleomycin resistance protein/dioxygenase YP_004434149.1 PFAM: Negative transcriptional regulator; KEGG: pat:Patl_2431 negative transcriptional regulator YP_004434150.1 PFAM: protein of unknown function DUF989; KEGG: pat:Patl_2430 hypothetical protein YP_004434151.1 KEGG: pat:Patl_2429 guanine deaminase; TIGRFAM: guanine deaminase; PFAM: amidohydrolase YP_004434152.1 KEGG: pat:Patl_2428 transthyretin; TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin YP_004434153.1 KEGG: pat:Patl_2427 hypothetical protein; TIGRFAM: OHCU decarboxylase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase YP_004434154.1 KEGG: pat:Patl_2426 hypothetical protein; TIGRFAM: xanthine dehydrogenase accessory protein XdhC; PFAM: protein of unknown function DUF182 YP_004434155.1 TIGRFAM: xanthine dehydrogenase, molybdopterin binding subunit; KEGG: pat:Patl_2425 xanthine dehydrogenase; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead YP_004434157.1 KEGG: pat:Patl_2424 molybdopterin dehydrogenase, FAD-binding; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; CO dehydrogenase flavoprotein domain protein YP_004434158.1 PFAM: Tetracycline transcriptional regulator YcdC domain-containing protein; regulatory protein TetR; KEGG: pat:Patl_2423 TetR family transcriptional regulator YP_004434159.1 TIGRFAM: urate catabolism protein; KEGG: pat:Patl_2422 polysaccharide deacetylase; PFAM: polysaccharide deacetylase YP_004434160.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pat:Patl_2421 xanthine/uracil/vitamin C permease YP_004434161.1 TIGRFAM: adenosine deaminase; KEGG: pat:Patl_2420 adenosine deaminase; PFAM: adenosine/AMP deaminase YP_004434162.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2419 major facilitator transporter YP_004434163.1 KEGG: pat:Patl_2418 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; protein phosphatase 2C domain protein; Tyrosine-protein kinase, catalytic domain YP_004434164.1 KEGG: pat:Patl_2417 nitrate transport protein YP_004434165.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_2416 binding-protein-dependent transport systems inner membrane component YP_004434166.1 TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; KEGG: pat:Patl_2415 nitrate ABC transporter, ATPase subunits C and D; SMART: AAA ATPase YP_004434167.1 KEGG: pat:Patl_2414 lipoprotein YP_004434168.1 KEGG: pat:Patl_2413 hypothetical protein YP_004434169.1 PFAM: protein of unknown function DUF541; KEGG: pat:Patl_2412 hypothetical protein YP_004434170.1 PFAM: glutaredoxin; KEGG: pat:Patl_2410 glutaredoxin YP_004434171.1 PFAM: protein of unknown function UPF0016; KEGG: pat:Patl_2409 hypothetical protein YP_004434172.1 KEGG: amc:MADE_00582 hypothetical protein YP_004434173.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2408 hypothetical protein YP_004434174.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2407 hypothetical protein YP_004434175.1 KEGG: pat:Patl_2406 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434176.1 KEGG: pat:Patl_2405 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004434177.1 PFAM: response regulator receiver; KEGG: ttu:TERTU_3627 response regulator receiver domain protein YP_004434178.1 KEGG: pat:Patl_2404 general stress protein YP_004434179.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_2402 TonB-dependent receptor, plug YP_004434180.1 KEGG: pat:Patl_2401 hypothetical protein YP_004434181.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pat:Patl_2400 NADH:flavin oxidoreductase/NADH oxidase YP_004434182.1 KEGG: pat:Patl_2397 hypothetical protein YP_004434183.1 PFAM: sodium/hydrogen exchanger; KEGG: pat:Patl_2396 sodium/hydrogen exchanger YP_004434184.1 KEGG: pat:Patl_2395 hypothetical protein YP_004434185.1 PFAM: outer membrane efflux protein; KEGG: pat:Patl_2394 outer membrane efflux protein YP_004434186.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pat:Patl_2393 RND family efflux transporter MFP subunit YP_004434187.1 KEGG: pat:Patl_2392 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_004434188.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_2391 zinc-binding alcohol dehydrogenase YP_004434189.1 TIGRFAM: adenosine deaminase; KEGG: pat:Patl_2390 adenosine deaminase; PFAM: adenosine/AMP deaminase YP_004434190.1 KEGG: pat:Patl_2389 peptidase M61; PFAM: peptidase M61 domain protein; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_004434191.1 PFAM: type IV pilus assembly PilZ; KEGG: pat:Patl_2388 type IV pilus assembly PilZ YP_004434192.1 KEGG: pat:Patl_2387 hypothetical protein YP_004434193.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: pat:Patl_2386 signal transduction histidine kinase, LytS YP_004434194.1 KEGG: pat:Patl_2385 response regulator receiver protein; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_004434195.1 KEGG: pat:Patl_2384 hypothetical protein YP_004434196.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: pat:Patl_2383 cupin 4 YP_004434197.1 KEGG: pat:Patl_2382 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase YP_004434198.1 KEGG: pat:Patl_2381 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain-containing protein; fumarate lyase YP_004434199.1 PFAM: protein of unknown function DUF489; KEGG: pat:Patl_2380 hypothetical protein YP_004434200.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: pat:Patl_2379 tRNA-specific 2-thiouridylase MnmA YP_004434201.1 PFAM: pseudouridine synthase; KEGG: pat:Patl_2378 pseudouridine synthase, Rsu YP_004434202.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; KEGG: pat:Patl_2377 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_004434203.1 TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; KEGG: pat:Patl_2376 cold-shock DNA-binding domain-containing protein; SMART: Cold shock protein YP_004434204.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pat:Patl_2375 ATP-dependent Clp protease adaptor protein ClpS YP_004434205.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: pat:Patl_2374 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: AAA ATPase YP_004434206.1 KEGG: pat:Patl_2373 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein YP_004434207.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: pat:Patl_2372 arginyl-tRNA-protein transferase YP_004434208.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: pat:Patl_2371 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_004434209.1 KEGG: pat:Patl_2370 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004434210.1 PFAM: protein of unknown function DUF412; KEGG: pat:Patl_2369 hypothetical protein YP_004434211.1 SMART: protein of unknown function SprT; KEGG: pat:Patl_2368 protein of unknown function DUF335, SprT YP_004434212.1 KEGG: pat:Patl_2367 signal peptide peptidase SppA, 67K type; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_004434213.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_2366 glyoxalase/bleomycin resistance protein/dioxygenase YP_004434214.1 KEGG: pat:Patl_2365 ribonuclease H; PFAM: ribonuclease H YP_004434215.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: pat:Patl_2364 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III YP_004434216.1 KEGG: pat:Patl_2363 hypothetical protein YP_004434217.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; KEGG: pat:Patl_2362 hypothetical protein YP_004434218.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; KEGG: pat:Patl_2361 lipoprotein releasing system, ATP-binding protein; SMART: AAA ATPase YP_004434219.1 KEGG: pat:Patl_2360 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_004434220.1 PFAM: sodium:dicarboxylate symporter; KEGG: pat:Patl_2359 sodium:dicarboxylate symporter YP_004434221.1 KEGG: pat:Patl_2358 Ig-like, group 1; PFAM: Ig domain protein group 1 domain protein; SMART: Ig domain protein group 1 domain protein YP_004434222.1 TIGRFAM: succinylarginine dihydrolase; KEGG: pat:Patl_2357 succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase YP_004434223.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; TIGRFAM: DNA topoisomerase I; KEGG: pat:Patl_2356 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I zinc ribbon domain protein YP_004434224.1 PFAM: Protein of unknown function DUF2058; KEGG: pat:Patl_2355 hypothetical protein YP_004434225.1 KEGG: pat:Patl_2354 hypothetical protein YP_004434226.1 KEGG: pat:Patl_2353 hypothetical protein YP_004434227.1 KEGG: pat:Patl_2352 hypothetical protein YP_004434228.1 PFAM: HPP family protein; KEGG: pat:Patl_2351 HPP domain-containing protein YP_004434229.1 KEGG: pat:Patl_2350 hypothetical protein YP_004434230.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: pat:Patl_2349 hypothetical protein YP_004434231.1 SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: pat:Patl_2348 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; VRR-NUC domain-containing protein YP_004434232.1 PFAM: esterase; KEGG: son:SO_4543 hypothetical protein YP_004434233.1 KEGG: pat:Patl_1909 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004434234.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1910 major facilitator transporter YP_004434235.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_1911 aldehyde dehydrogenase YP_004434236.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pat:Patl_1912 peptidase M1, membrane alanine aminopeptidase YP_004434237.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_1913 AMP-dependent synthetase and ligase YP_004434238.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_1914 short-chain dehydrogenase/reductase SDR YP_004434239.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_1915 haloalkane dehalogenase YP_004434240.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_1916 3-hydroxyacyl-CoA dehydrogenase, NAD-binding YP_004434241.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: pat:Patl_1917 acetyl-CoA acetyltransferases; PFAM: Thiolase-like YP_004434242.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_1918 acyl-CoA dehydrogenase-like YP_004434243.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_1919 alpha/beta hydrolase fold YP_004434244.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1920 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434245.1 KEGG: pat:Patl_1815 hypothetical protein YP_004434246.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pat:Patl_1922 phytanoyl-CoA dioxygenase YP_004434247.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_1923 TetR family transcriptional regulator YP_004434248.1 PFAM: dihydrodipicolinate synthetase; KEGG: dhd:Dhaf_1978 dihydrodipicolinate synthetase YP_004434249.1 PFAM: purine nucleoside permease; protein of unknown function DUF985; KEGG: pat:Patl_2226 purine nucleoside permease YP_004434250.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_2225 TonB-dependent receptor YP_004434251.1 KEGG: pat:Patl_2224 hydroxydechloroatrazine ethylaminohydrolase; PFAM: amidohydrolase YP_004434252.1 KEGG: pat:Patl_2223 uracil-xanthine permease; TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease YP_004434253.1 KEGG: pat:Patl_2222 adenosine deaminase; PFAM: adenosine/AMP deaminase YP_004434254.1 KEGG: pat:Patl_2221 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_004434255.1 PFAM: protein of unknown function DUF541; KEGG: pat:Patl_2220 hypothetical protein YP_004434256.1 KEGG: pat:Patl_2219 cytochrome b561 YP_004434257.1 KEGG: pat:Patl_2218 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase YP_004434258.1 KEGG: pat:Patl_2217 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; regulatory protein MarR; SMART: Transcription regulator AsnC-type YP_004434259.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: pat:Patl_2216 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_004434260.1 KEGG: pat:Patl_2215 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I YP_004434261.1 KEGG: pat:Patl_2214 carbamoyl phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein YP_004434262.1 KEGG: pat:Patl_2213 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_004434263.1 PFAM: ThiJ/PfpI domain-containing protein; KEGG: pat:Patl_2212 ThiJ/PfpI YP_004434264.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_2211 hypothetical protein YP_004434265.1 KEGG: pat:Patl_2210 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004434266.1 KEGG: pat:Patl_2209 CBS domain-containing protein; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein YP_004434267.1 PFAM: protein of unknown function UPF0054; KEGG: pat:Patl_2208 hypothetical protein YP_004434268.1 PFAM: PhoH family protein; KEGG: pat:Patl_2207 PhoH-like protein YP_004434269.1 TIGRFAM: tRNA-i(6)A37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: pat:Patl_2206 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB YP_004434270.1 KEGG: pat:Patl_2205 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004434271.1 KEGG: pat:Patl_2204 hypothetical protein YP_004434272.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_2203 DNA-binding transcriptional activator GcvA YP_004434273.1 KEGG: pat:Patl_2202 hypothetical protein YP_004434274.1 PFAM: protein of unknown function DUF423; KEGG: pat:Patl_2201 hypothetical protein YP_004434275.1 KEGG: pat:Patl_2200 RNA 2'-O-ribose methyltransferase YP_004434276.1 PFAM: SeqA family protein; KEGG: pat:Patl_2199 negative regulator of replication initiation YP_004434277.1 KEGG: pat:Patl_2198 phosphoglucomutase; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_004434278.1 KEGG: pat:Patl_2197 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_004434279.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_2196 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004434280.1 TIGRFAM: succinylglutamate desuccinylase; KEGG: pat:Patl_2195 succinylglutamate desuccinylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_004434281.1 PFAM: protein of unknown function DUF74; KEGG: pat:Patl_2194 hypothetical protein YP_004434282.1 KEGG: spe:Spro_3503 hypothetical protein YP_004434283.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: pat:Patl_2193 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins YP_004434284.1 KEGG: pat:Patl_2192 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004434285.1 PFAM: arsenate reductase and related; KEGG: pat:Patl_2191 hypothetical protein YP_004434286.1 PFAM: Rhomboid family protein; KEGG: pat:Patl_2190 rhomboid-like protein YP_004434288.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_2189 4-hydroxybenzoyl-CoA thioesterase YP_004434289.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_2188 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434290.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2187 major facilitator transporter YP_004434291.1 KEGG: pat:Patl_2186 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004434292.1 KEGG: pat:Patl_2185 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004434293.1 KEGG: pat:Patl_2184 glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain YP_004434294.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2183 short-chain dehydrogenase/reductase SDR YP_004434295.1 TIGRFAM: extracellular lipase, Pla-1/cef family; KEGG: pat:Patl_2182 hypothetical protein YP_004434296.1 PFAM: Peptidase S49 domain protein; peptidase S49; KEGG: pat:Patl_2181 periplasmic protease YP_004434297.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2180 TonB-dependent receptor YP_004434298.1 KEGG: amc:MADE_02324 zinc-dependent metallopeptidase; PFAM: peptidase M2 peptidyl-dipeptidase A YP_004434299.1 KEGG: pat:Patl_2179 deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_004434300.1 PFAM: protein of unknown function DUF34; KEGG: pat:Patl_2178 hypothetical protein YP_004434301.1 PFAM: Methyltransferase type 11; KEGG: pat:Patl_2177 methyltransferase type 11 YP_004434302.1 KEGG: pat:Patl_2176 glutathione peroxidase; PFAM: glutathione peroxidase YP_004434303.1 KEGG: pat:Patl_2175 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_004434304.1 KEGG: pat:Patl_2174 hypothetical protein YP_004434305.1 PFAM: protein of unknown function DUF342; KEGG: pat:Patl_2173 hypothetical protein YP_004434306.1 KEGG: pat:Patl_2172 exodeoxyribonuclease I; PFAM: Exonuclease domain protein; Exonuclease RNase T and DNA polymerase III YP_004434307.1 KEGG: pat:Patl_2171 CBS domain-containing protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_004434308.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; helicase domain protein; protein of unknown function DUF1605; KEGG: pat:Patl_2170 ATP-dependent helicase HrpA; SMART: DEAD-like helicase ; AAA ATPase; helicase domain protein YP_004434309.1 PFAM: type IV pilus assembly PilZ; KEGG: pat:Patl_2169 type IV pilus assembly PilZ YP_004434310.1 SMART: PUA domain containing protein; KEGG: pat:Patl_2168 PUA domain-containing protein YP_004434311.1 KEGG: pat:Patl_2167 zinc-binding alcohol dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004434312.1 KEGG: pat:Patl_2166 calcium-binding EF-hand YP_004434313.1 KEGG: pat:Patl_2165 hypothetical protein YP_004434314.1 KEGG: pat:Patl_2164 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004434315.1 KEGG: pat:Patl_2163 cell wall biogenesis glycosyltransferase YP_004434316.1 TIGRFAM: mannosyl-3-phosphoglycerate phosphatase family; HAD-superfamily hydrolase, subfamily IIB; KEGG: pat:Patl_2162 mannosyl-3-phosphoglycerate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase type 3 YP_004434317.1 KEGG: pat:Patl_2161 hypothetical protein YP_004434319.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; KEGG: pat:Patl_2160 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB YP_004434320.1 KEGG: pat:Patl_2159 molybdopterin biosynthesis gene YP_004434321.1 KEGG: pat:Patl_2158 molybdenum cofactor biosynthesis protein B; TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain YP_004434322.1 KEGG: pat:Patl_2157 molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC YP_004434323.1 KEGG: pat:Patl_2156 thiamineS; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein YP_004434324.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pat:Patl_2155 molybdopterin biosynthesis MoaE YP_004434325.1 manually curated; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: pat:Patl_2154 molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1 YP_004434326.1 manually curated; TIGRFAM: molybdate ABC transporter, inner membrane subunit; KEGG: pat:Patl_2153 molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component YP_004434327.1 PFAM: ferric-uptake regulator; KEGG: pat:Patl_2152 ferric uptake regulator YP_004434328.1 KEGG: pat:Patl_2151 flavodoxin FldA; TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase YP_004434329.1 KEGG: pat:Patl_2150 hypothetical protein YP_004434330.1 KEGG: pat:Patl_2149 alpha/beta hydrolase fold; manually curated; PFAM: alpha/beta hydrolase fold YP_004434331.1 manually curated; PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: pat:Patl_2148 histone-like nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS YP_004434332.1 KEGG: pat:Patl_2147 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; monooxygenase FAD-binding YP_004434333.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pat:Patl_2146 electron transfer flavoprotein beta-subunit YP_004434334.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pat:Patl_2145 electron transfer flavoprotein, alpha subunit YP_004434335.1 KEGG: pat:Patl_2144 beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein YP_004434336.1 PFAM: glycoside hydrolase family 13 domain protein; KEGG: pat:Patl_2143 glycoside hydrolase family protein YP_004434337.1 KEGG: pat:Patl_2142 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain-containing protein; SMART: Helix-turn-helix, AraC domain YP_004434338.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_2141 acyl-CoA dehydrogenase-like YP_004434339.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: hch:HCH_06814 NADP-dependent oxidoreductase YP_004434340.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2140 short-chain dehydrogenase/reductase SDR YP_004434341.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2139 short chain dehydrogenase YP_004434342.1 PFAM: Uncharacterised conserved protein UCP025560; KEGG: pat:Patl_2138 hypothetical protein YP_004434343.1 KEGG: pat:Patl_2137 hypothetical protein YP_004434344.1 KEGG: pat:Patl_2136 hypothetical protein YP_004434345.1 KEGG: pat:Patl_2135 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004434346.1 KEGG: pat:Patl_2134 ribonuclease; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_004434347.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: pat:Patl_2133 RluA family pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_004434348.1 KEGG: pat:Patl_2132 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004434349.1 KEGG: pat:Patl_2131 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase YP_004434350.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: pat:Patl_2130 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_004434351.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pat:Patl_2129 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase YP_004434352.1 KEGG: pat:Patl_2128 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_004434353.1 PFAM: protein of unknown function DUF177; KEGG: pat:Patl_2127 hypothetical protein YP_004434354.1 KEGG: pat:Patl_2126 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein YP_004434355.1 KEGG: pat:Patl_2125 fatty acid/phospholipid synthesis protein PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein YP_004434356.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: pat:Patl_2124 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_004434357.1 KEGG: pat:Patl_2123 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase YP_004434358.1 KEGG: pat:Patl_2122 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR YP_004434359.1 KEGG: pat:Patl_2121 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding YP_004434360.1 KEGG: pat:Patl_2120 beta-ketoacyl synthase; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase YP_004434361.1 KEGG: pat:Patl_2119 aminotransferase, class IV; TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV YP_004434362.1 PFAM: aminodeoxychorismate lyase; KEGG: pat:Patl_2118 aminodeoxychorismate lyase YP_004434363.1 TIGRFAM: thymidylate kinase; KEGG: pat:Patl_2117 thymidylate kinase; PFAM: thymidylate kinase YP_004434364.1 KEGG: pat:Patl_2116 DNA-directed DNA polymerase YP_004434365.1 KEGG: pat:Patl_2115 TatD family hydrolase; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease YP_004434366.1 KEGG: pat:Patl_2114 hypothetical protein YP_004434367.1 KEGG: pat:Patl_2113 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain YP_004434368.1 SMART: Pyrrolo-quinoline quinone beta-propeller repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; KEGG: pat:Patl_2112 pyrrolo-quinoline quinone; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone repeat-containing protein YP_004434369.1 PFAM: integrase family protein; KEGG: pat:Patl_2111 phage integrase YP_004434370.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: pat:Patl_2110 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase domain-containing protein; 6-phosphogluconate dehydrogenase NAD-binding YP_004434371.1 PFAM: Redoxin domain protein; KEGG: pat:Patl_2109 redoxin YP_004434372.1 PFAM: Integrase catalytic region; KEGG: sdn:Sden_3580 integrase catalytic subunit YP_004434373.1 PFAM: amino acid permease-associated region; KEGG: amc:MADE_00777 cationic amino acid transport protein YP_004434374.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pat:Patl_2107 protein of unknown function DUF395, YeeE/YedE YP_004434375.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: pat:Patl_2106 protein of unknown function DUF395, YeeE/YedE YP_004434376.1 KEGG: pat:Patl_2105 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR YP_004434377.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; KEGG: pat:Patl_2104 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver YP_004434378.1 PFAM: UspA domain-containing protein; KEGG: pat:Patl_2103 hypothetical protein YP_004434379.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: pat:Patl_2097 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein YP_004434380.1 KEGG: pat:Patl_2096 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004434381.1 KEGG: pat:Patl_2095 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004434382.1 KEGG: pat:Patl_2092 hypothetical protein YP_004434383.1 KEGG: pat:Patl_2091 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_004434384.1 KEGG: pha:PSHAa1010 transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004434385.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_2089 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004434386.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: pat:Patl_2088 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004434387.1 PFAM: phosphofructokinase; KEGG: pat:Patl_2087 6-phosphofructokinase YP_004434388.1 SMART: Rhodanese domain protein; KEGG: pat:Patl_2086 rhodanese-like protein YP_004434390.1 KEGG: pat:Patl_2085 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding YP_004434391.1 KEGG: pat:Patl_2083 hypothetical protein YP_004434392.1 KEGG: pat:Patl_2082 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004434393.1 KEGG: pat:Patl_2081 phospholipase A1; PFAM: phospholipase A1 YP_004434394.1 PFAM: OmpA/MotB domain protein; Thrombospondin type 3 repeat-containing protein; KEGG: pat:Patl_2080 OmpA/MotB YP_004434395.1 KEGG: afn:Acfer_1519 hypothetical protein YP_004434396.1 KEGG: pat:Patl_2079 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004434397.1 PFAM: Conserved TM helix repeat-containing protein; KEGG: pat:Patl_2078 TM helix protein YP_004434398.1 KEGG: pat:Patl_2077 hypothetical protein YP_004434399.1 PFAM: protein of unknown function DUF21; KEGG: pha:PSHAa0713 hypothetical protein YP_004434400.1 manually curated; TIGRFAM: bacterioferritin; KEGG: pat:Patl_2076 bacterioferritin; PFAM: Ferritin Dps family protein YP_004434401.1 KEGG: pat:Patl_2075 bacterioferritin; TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein YP_004434402.1 KEGG: pat:Patl_2074 hypothetical protein YP_004434403.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; KEGG: pat:Patl_2073 cbb3-type cytochrome c oxidase subunit I; PFAM: cytochrome c oxidase subunit I YP_004434404.1 KEGG: pat:Patl_2072 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO YP_004434405.1 KEGG: pat:Patl_2071 Cbb3-type cytochrome oxidase component YP_004434406.1 KEGG: pat:Patl_2070 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I YP_004434407.1 PFAM: FixH family protein; KEGG: pat:Patl_2069 hypothetical protein YP_004434408.1 KEGG: pat:Patl_2068 heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_004434409.1 KEGG: pat:Patl_2067 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type YP_004434410.1 KEGG: pat:Patl_2066 integral membrane protein YP_004434411.1 PFAM: UspA domain-containing protein; KEGG: pat:Patl_2065 universal stress protein UspE YP_004434412.1 KEGG: amc:MADE_03782 permease; manually curated; PFAM: protein of unknown function DUF214 YP_004434413.1 manually curated; PFAM: ABC transporter related; KEGG: ilo:IL2264 ABC-type transport system, ATPase component; SMART: AAA ATPase YP_004434414.1 PFAM: PP-loop domain protein; KEGG: pat:Patl_2064 PP-loop superfamily ATPase YP_004434415.1 PFAM: Patatin; KEGG: pat:Patl_2063 patatin YP_004434416.1 KEGG: pin:Ping_2149 hypothetical protein; manually curated; PFAM: protein of unknown function DUF6 transmembrane YP_004434417.1 manually curated; KEGG: pat:Patl_2062 hypothetical protein YP_004434418.1 SMART: Lysozyme subfamily 2; KEGG: pat:Patl_2061 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_004434419.1 KEGG: pat:Patl_2060 hypothetical protein YP_004434420.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_2059 lysine exporter protein LysE/YggA YP_004434421.1 KEGG: pat:Patl_2058 NAD-dependent deacetylase; manually curated; PFAM: Silent information regulator protein Sir2 YP_004434422.1 manually curated YP_004434423.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_2057 RpiR family transcriptional regulator YP_004434424.1 PFAM: fumarate lyase; Fumarase C-like; KEGG: pat:Patl_2056 fumarate hydratase YP_004434425.1 PFAM: Amidase; KEGG: pat:Patl_2055 amidase YP_004434426.1 KEGG: pat:Patl_2054 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_004434427.1 PFAM: protein of unknown function DUF81; KEGG: pat:Patl_2053 hypothetical protein YP_004434428.1 PFAM: aminotransferase class V; KEGG: pat:Patl_2052 aminotransferase, class V YP_004434429.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: pat:Patl_2051 allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004434430.1 KEGG: pat:Patl_2050 DSBH domain-containing protein YP_004434431.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pat:Patl_2049 hypothetical protein YP_004434432.1 TIGRFAM: Glutaminase, core; KEGG: pat:Patl_2048 glutaminase; PFAM: Glutaminase, core YP_004434433.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_2047 GCN5-related N-acetyltransferase YP_004434434.1 KEGG: pat:Patl_2046 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434435.1 KEGG: pat:Patl_2045 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004434436.1 KEGG: pat:Patl_2044 hypothetical protein YP_004434438.1 KEGG: pat:Patl_2043 serine--pyruvate transaminase; PFAM: aminotransferase class V YP_004434439.1 KEGG: pat:Patl_2042 hexapaptide repeat-containing transferase YP_004434440.1 PFAM: acyl-CoA thioesterase; KEGG: pat:Patl_2041 palmitoyl-CoA hydrolase YP_004434441.1 KEGG: pat:Patl_2040 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase YP_004434442.1 PFAM: protein of unknown function DUF519; KEGG: pat:Patl_2039 hypothetical protein YP_004434443.1 PFAM: catalytic domain-containing protein of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: pat:Patl_2038 dihydrolipoamide acetyltransferase YP_004434444.1 PFAM: Transketolase central region; Transketolase domain-containing protein; KEGG: pat:Patl_2037 transketolase, central region YP_004434445.1 KEGG: pat:Patl_2036 3-methyl-2-oxobutanoate dehydrogenase (lipoamide); PFAM: dehydrogenase E1 component YP_004434446.1 PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: pat:Patl_2035 cytochrome c oxidase, subunit I YP_004434447.1 PFAM: aminotransferase class I and II; KEGG: pat:Patl_2034 aminotransferase AlaT YP_004434448.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: amc:MADE_01071 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_004434449.1 PFAM: Vitamin K epoxide reductase; NAD-dependent epimerase/dehydratase; KEGG: amc:MADE_01480 DNA polymerase 3, epsilon subunit YP_004434450.1 KEGG: pat:Patl_2016 hypothetical protein YP_004434451.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pat:Patl_2015 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region YP_004434452.1 PFAM: oxidoreductase molybdopterin binding; KEGG: pat:Patl_2014 sulfite oxidase subunit YedY YP_004434453.1 PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: pat:Patl_2013 ferric reductase-like transmembrane component-like YP_004434454.1 KEGG: pat:Patl_2012 hypothetical protein YP_004434455.1 PFAM: SEC-C motif domain protein; KEGG: pat:Patl_2011 SecC motif-containing protein YP_004434456.1 KEGG: pat:Patl_2010 hypothetical protein YP_004434457.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: pat:Patl_2009 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004434458.1 PFAM: ribosome modulation factor; KEGG: pat:Patl_2008 ribosome modulation factor YP_004434459.1 TIGRFAM: conserved hypothetical protein; KEGG: pat:Patl_2007 hypothetical protein YP_004434460.1 KEGG: pat:Patl_2006 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434461.1 KEGG: amc:MADE_02011 thiol-disulfide isomerase and thioredoxin I; manually curated; PFAM: glutaredoxin 2 YP_004434462.1 manually curated; KEGG: pat:Patl_2005 23S rRNA m(2)G2445 methyltransferase; PFAM: RNA methylase; THUMP domain-containing protein YP_004434463.1 PFAM: protein of unknown function DUF1379; KEGG: pat:Patl_2004 hypothetical protein YP_004434464.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: pat:Patl_2003 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase YP_004434465.1 PFAM: NAD-glutamate dehydrogenase; KEGG: pat:Patl_2002 NAD-glutamate dehydrogenase YP_004434466.1 KEGG: pat:Patl_2001 hypothetical protein YP_004434467.1 KEGG: pat:Patl_2000 BNR repeat-containing protein YP_004434468.1 KEGG: pat:Patl_1999 hypothetical protein YP_004434469.1 PFAM: protein of unknown function DUF1302; KEGG: pat:Patl_1998 hypothetical protein YP_004434470.1 PFAM: Protein of unknown function DUF2835; KEGG: pat:Patl_1997 hypothetical protein YP_004434471.1 KEGG: pat:Patl_1996 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase YP_004434472.1 KEGG: pat:Patl_1995 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_004434473.1 PFAM: sodium:neurotransmitter symporter; KEGG: pat:Patl_1994 sodium:neurotransmitter symporter YP_004434474.1 SMART: peptidase S41; PDZ/DHR/GLGF domain protein; TIGRFAM: carboxyl-terminal protease; KEGG: pat:Patl_1993 carboxy-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein YP_004434475.1 PFAM: Fertility inhibition FinO-like; KEGG: pat:Patl_1992 solute/DNA competence effector YP_004434476.1 KEGG: pat:Patl_1991 hypothetical protein YP_004434477.1 PFAM: GAF domain protein; KEGG: pat:Patl_1990 GAF sensor protein YP_004434478.1 PFAM: cytochrome c class II; KEGG: pat:Patl_1989 cytochrome c, class II YP_004434479.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: pat:Patl_1988 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein YP_004434480.1 KEGG: pat:Patl_1987 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70 YP_004434481.1 PFAM: GrpE protein; KEGG: pat:Patl_1986 GrpE protein YP_004434482.1 KEGG: pat:Patl_1985 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver YP_004434483.1 TIGRFAM: prevent-host-death family protein; KEGG: amc:MADE_00612 hypothetical protein YP_004434484.1 KEGG: amc:MADE_00613 RelE protein; TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system YP_004434485.1 PFAM: RDD domain containing protein; KEGG: cps:CPS_2964 hypothetical protein YP_004434486.1 KEGG: pat:Patl_1385 hypothetical protein YP_004434487.1 KEGG: pat:Patl_1948 hypothetical protein YP_004434488.1 KEGG: pat:Patl_1985 multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver YP_004434489.1 PFAM: transposase IS3/IS911 family protein; KEGG: psp:PSPPH_3740 ISPsy24, transposase orfA YP_004434490.1 PFAM: Integrase catalytic region; KEGG: pap:PSPA7_4229 hypothetical protein YP_004434491.1 KEGG: phu:Phum_PHUM098460 myosin-9 YP_004434492.1 KEGG: swp:swp_1912 hypothetical protein YP_004434493.1 KEGG: phu:Phum_PHUM540440 hypothetical protein YP_004434494.1 KEGG: aap:NT05HA_1711 hypothetical protein YP_004434495.1 KEGG: pat:Patl_1843 integron integrase; TIGRFAM: integron integrase; PFAM: integrase family protein YP_004434496.1 PFAM: sodium/hydrogen exchanger; KEGG: pat:Patl_1982 sodium/hydrogen exchanger YP_004434497.1 KEGG: pat:Patl_1981 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver YP_004434498.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1980 TonB-dependent receptor YP_004434499.1 PFAM: Citrate transporter; KEGG: pat:Patl_1979 citrate transporter YP_004434500.1 KEGG: pat:Patl_1978 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_004434501.1 KEGG: pat:Patl_1977 polyhydroxybutyrate depolymerase YP_004434502.1 KEGG: pat:Patl_1976 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR YP_004434503.1 KEGG: ppr:PBPRA2654 hypothetical protein YP_004434504.1 PFAM: Tail Collar domain protein; KEGG: amr:AM1_3689 phage tail collar YP_004434505.1 PFAM: Tail Collar domain protein; KEGG: fjo:Fjoh_2684 phage tail collar domain-containing protein YP_004434506.1 PFAM: Tail Collar domain protein; KEGG: sit:TM1040_3286 phage tail collar YP_004434507.1 KEGG: pat:Patl_1975 catalase/peroxidase HPI; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_004434508.1 KEGG: pat:Patl_1974 hypothetical protein YP_004434509.1 KEGG: pat:Patl_1973 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; leucine-rich repeat-containing protein; SMART: serine/threonine protein kinase; leucine-rich repeat-containing protein typical subtype YP_004434510.1 KEGG: pat:Patl_1958 hypothetical protein YP_004434511.1 PFAM: amine oxidase; KEGG: pat:Patl_1957 amine oxidase YP_004434512.1 KEGG: pat:Patl_1955 hypothetical protein YP_004434513.1 PFAM: protein of unknown function DUF469; KEGG: pat:Patl_1954 hypothetical protein YP_004434514.1 KEGG: pat:Patl_1953 hypothetical protein YP_004434515.1 KEGG: pat:Patl_1941 alpha-1,6-glucosidases, pullulanase-type; TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase family 13 domain protein YP_004434516.1 KEGG: pat:Patl_1940 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434517.1 KEGG: pat:Patl_1939 tryptophan halogenase YP_004434518.1 KEGG: cps:CPS_0992 tryptophan halogenase YP_004434519.1 KEGG: amc:MADE_01879 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434520.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: cse:Cseg_3764 transcription factor jumonji JmjC domain-containing protein YP_004434521.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1937 hypothetical protein YP_004434522.1 KEGG: pat:Patl_1936 UBA/ThiF-type NAD/FAD binding fold; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; SMART: Rhodanese domain protein YP_004434523.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; KEGG: pat:Patl_1935 thiamine-phosphate pyrophosphorylase; PFAM: Phosphomethylpyrimidine kinase type-1; thiamine monophosphate synthase YP_004434524.1 PFAM: thiazole biosynthesis family protein; KEGG: pat:Patl_1934 thiazole synthase YP_004434525.1 KEGG: pat:Patl_1933 thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein YP_004434526.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_1932 FAD dependent oxidoreductase YP_004434527.1 KEGG: pat:Patl_1931 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC YP_004434528.1 KEGG: pat:Patl_1930 RNA-binding region RNP-1; PFAM: RNP-1 like RNA-binding protein; SMART: RNP-1 like RNA-binding protein YP_004434529.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_1929 TetR family transcriptional regulator YP_004434530.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pat:Patl_1928 NADH:flavin oxidoreductase/NADH oxidase YP_004434531.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1927 major facilitator transporter YP_004434532.1 KEGG: cbl:CLK_2488 polysaccharide transporter YP_004434533.1 KEGG: ppw:PputW619_2865 methyl-accepting chemotaxis sensory transducer YP_004434534.1 KEGG: pat:Patl_1926 hypothetical protein YP_004434536.1 KEGG: pat:Patl_1925 hypothetical protein YP_004434537.1 KEGG: pat:Patl_2227 hypothetical protein YP_004434538.1 KEGG: pat:Patl_2228 OmpA-like transmembrane region YP_004434539.1 KEGG: pat:Patl_2229 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004434540.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_2230 acriflavin resistance protein YP_004434541.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_2231 acriflavin resistance protein YP_004434542.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_2232 aldo/keto reductase YP_004434543.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pat:Patl_2233 tRNA/rRNA methyltransferase (SpoU) YP_004434544.1 KEGG: pat:Patl_2234 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004434545.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_2235 acriflavin resistance protein YP_004434546.1 PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pat:Patl_2236 formate dehydrogenase YP_004434547.1 PFAM: protein of unknown function DUF1272; KEGG: pat:Patl_2237 hypothetical protein YP_004434548.1 KEGG: pat:Patl_2238 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004434549.1 KEGG: pat:Patl_2239 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434550.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2240 hypothetical protein YP_004434551.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2241 hypothetical protein YP_004434552.1 KEGG: pat:Patl_1971 agarase YP_004434553.1 TIGRFAM: sugar transporter; KEGG: pat:Patl_1970 sugar transporter YP_004434554.1 PFAM: PfkB domain protein; KEGG: pat:Patl_1969 PfkB YP_004434555.1 PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: pat:Patl_1968 hypothetical protein YP_004434556.1 PFAM: helix-turn-helix domain protein; KEGG: pat:Patl_1967 hypothetical protein YP_004434557.1 PFAM: extracellular solute-binding protein family 1; KEGG: hch:HCH_00071 ABC-type sugar transport system, periplasmic component YP_004434558.1 KEGG: hch:HCH_01751 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein YP_004434559.1 KEGG: pat:Patl_1966 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434560.1 KEGG: pat:Patl_1965 hypothetical protein YP_004434561.1 KEGG: pat:Patl_1964 tryptophan halogenase YP_004434562.1 PFAM: SapC family protein; KEGG: pat:Patl_1963 SapC YP_004434563.1 KEGG: pat:Patl_0806 hypothetical protein YP_004434564.1 PFAM: NHL repeat containing protein; KEGG: pat:Patl_1962 peptidylglycine monooxygenase-like YP_004434565.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pat:Patl_1961 phytanoyl-CoA dioxygenase YP_004434566.1 KEGG: pat:Patl_1960 IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR YP_004434567.1 KEGG: pat:Patl_2242 hypothetical protein YP_004434568.1 KEGG: pat:Patl_2243 hypothetical protein YP_004434569.1 KEGG: pat:Patl_2244 hypothetical protein YP_004434570.1 KEGG: pat:Patl_2245 hypothetical protein YP_004434571.1 KEGG: pat:Patl_1948 hypothetical protein YP_004434572.1 KEGG: swp:swp_1106 hypothetical protein YP_004434573.1 KEGG: vcj:VCD_002383 long-chain-fatty-acid--CoA ligase YP_004434574.1 KEGG: pat:Patl_2246 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_004434575.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: pat:Patl_2247 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAS domain containing protein YP_004434576.1 KEGG: pat:Patl_2248 response regulator receiver modulated metal dependent phosphohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region YP_004434577.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; PAS fold domain protein; PAS fold-3 domain protein; response regulator receiver; KEGG: pat:Patl_2249 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver YP_004434578.1 KEGG: pat:Patl_2250 hypothetical protein YP_004434579.1 KEGG: pat:Patl_2251 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004434580.1 KEGG: pat:Patl_2252 histidine kinase; PFAM: histidine kinase A domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein YP_004434581.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; KEGG: pat:Patl_2253 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein YP_004434582.1 KEGG: pat:Patl_2254 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004434583.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_2255 aldo/keto reductase YP_004434584.1 KEGG: pat:Patl_2256 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004434585.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_2257 MscS mechanosensitive ion channel YP_004434586.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2258 TonB-dependent receptor YP_004434587.1 PFAM: FAD-binding 9 siderophore-interacting domain protein; Siderophore-interacting protein; KEGG: pat:Patl_2259 FAD-binding 9, siderophore-interacting YP_004434588.1 KEGG: pat:Patl_2260 hypothetical protein YP_004434589.1 KEGG: pat:Patl_2261 hypothetical protein YP_004434590.1 KEGG: pat:Patl_2262 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004434591.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: pat:Patl_2263 sodium/hydrogen exchanger YP_004434592.1 KEGG: pat:Patl_2264 hypothetical protein YP_004434593.1 KEGG: pat:Patl_2265 hypothetical protein YP_004434594.1 KEGG: bam:Bamb_4305 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: fumarylacetoacetate (FAA) hydrolase YP_004434595.1 KEGG: bam:Bamb_5216 intradiol ring-cleavage dioxygenase; PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase domain protein YP_004434596.1 PFAM: Glutathione S-transferase domain; KEGG: swi:Swit_3071 glutathione S-transferase domain-containing protein YP_004434597.1 KEGG: pat:Patl_2267 gluconate transporter; TIGRFAM: gluconate transporter; PFAM: Gluconate transporter YP_004434598.1 PFAM: Endoribonuclease L-PSP; KEGG: pat:Patl_2268 endoribonuclease L-PSP YP_004434599.1 PFAM: UvrD/REP helicase; KEGG: pat:Patl_2269 UvrD/REP helicase YP_004434600.1 manually curated; KEGG: pat:Patl_2270 hypothetical protein YP_004434601.1 KEGG: pat:Patl_2271 hypothetical protein YP_004434602.1 PFAM: Uncharacterised protein family UPF0126; KEGG: pat:Patl_2272 hypothetical protein YP_004434603.1 KEGG: bxe:Bxe_B1312 hydrolase; manually curated; PFAM: alpha/beta hydrolase fold YP_004434604.1 SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver; manually curated; KEGG: bxe:Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver YP_004434605.1 KEGG: pat:Patl_2273 hydroxylase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit YP_004434606.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pat:Patl_2274 (S)-2-hydroxy-acid oxidase YP_004434607.1 KEGG: pat:Patl_2275 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004434608.1 TIGRFAM: TonB family protein; KEGG: pat:Patl_2276 TonB family protein YP_004434609.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_2277 biopolymer transport protein ExbD/TolR YP_004434610.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_2278 biopolymer transport protein ExbD/TolR YP_004434611.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2279 MotA/TolQ/ExbB proton channel YP_004434612.1 KEGG: pat:Patl_2280 hypothetical protein YP_004434613.1 KEGG: pat:Patl_2281 FAD linked oxidase-like; PFAM: FAD linked oxidase domain protein YP_004434614.1 KEGG: pat:Patl_2282 phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP) YP_004434615.1 PFAM: protein of unknown function DUF1428; KEGG: pat:Patl_2283 hypothetical protein YP_004434616.1 KEGG: pat:Patl_3285 hypothetical protein YP_004434617.1 KEGG: amc:MADE_00622 hypothetical protein YP_004434618.1 KEGG: mpo:Mpop_3619 protein of unknown function DUF1486; manually curated; PFAM: protein of unknown function DUF1486 YP_004434619.1 PFAM: protein of unknown function DUF1486; KEGG: apb:SAR116_0040 hypothetical protein YP_004434620.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: swi:Swit_5036 cupin 2 domain-containing protein YP_004434621.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sno:Snov_0230 short-chain dehydrogenase/reductase SDR YP_004434622.1 TIGRFAM: histidinol dehydrogenase; KEGG: vha:VIBHAR_02554 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_004434623.1 KEGG: mes:Meso_1929 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004434624.1 KEGG: jan:Jann_2089 alpha/beta hydrolase YP_004434625.1 PFAM: HpcH/HpaI aldolase; KEGG: vha:VIBHAR_02555 hypothetical protein YP_004434626.1 PFAM: UspA domain-containing protein; KEGG: sfr:Sfri_0938 UspA domain-containing protein YP_004434627.1 KEGG: pha:PSHAb0020 hypothetical protein YP_004434628.1 KEGG: pat:Patl_1948 hypothetical protein YP_004434629.1 KEGG: vvu:VV1_2466 DNA replication ATPase YP_004434630.1 KEGG: pjd:Pjdr2_1139 kinase YP_004434631.1 KEGG: lbz:LbrM07_V2.0690 hypothetical protein YP_004434632.1 PFAM: protein of unknown function DUF1486; KEGG: cdl:CDR20291_0606 hypothetical protein YP_004434633.1 KEGG: vha:VIBHAR_02564 hypothetical protein; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004434634.1 PFAM: protein of unknown function DUF1486; KEGG: cdl:CDR20291_0605 hypothetical protein YP_004434635.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0377 TonB-dependent receptor YP_004434636.1 PFAM: protein of unknown function DUF1486; KEGG: apb:SAR116_0045 hypothetical protein YP_004434637.1 KEGG: sse:Ssed_2789 hypothetical protein YP_004434638.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shn:Shewana3_2239 GCN5-related N-acetyltransferase YP_004434639.1 KEGG: kko:Kkor_0081 hypothetical protein YP_004434640.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amr:AM1_5032 glyoxalase/bleomycin resistance protein/dioxygenase YP_004434641.1 KEGG: pat:Patl_2287 ferredoxin--NADP(+) reductase; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein YP_004434642.1 KEGG: pat:Patl_2288 phosphorylase kinase alphabeta YP_004434643.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_2289 lysine exporter protein LysE/YggA YP_004434644.1 KEGG: cag:Cagg_0452 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_004434645.1 PFAM: protein of unknown function DUF262; KEGG: scl:sce6757 hypothetical protein YP_004434646.1 KEGG: scl:sce6758 hypothetical protein YP_004434647.1 KEGG: scl:sce6759 hypothetical protein YP_004434648.1 KEGG: pat:Patl_2290 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004434649.1 KEGG: pat:Patl_2291 periplasmic sensor signal transduction histidine kinase; PFAM: Cache type 2 domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004434650.1 PFAM: Extracellular solute-binding protein, family 7; KEGG: pat:Patl_2292 TRAP dicarboxylate transporter-DctP subunit YP_004434651.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pat:Patl_2293 tripartite ATP-independent periplasmic transporter DctQ YP_004434652.1 KEGG: pat:Patl_2294 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit YP_004434653.1 KEGG: pat:Patl_2295 hypothetical protein YP_004434654.1 KEGG: pat:Patl_2295 hypothetical protein YP_004434655.1 KEGG: pat:Patl_2296 hypothetical protein YP_004434656.1 KEGG: pat:Patl_2297 superoxide dismutase, copper/zinc binding; PFAM: superoxide dismutase copper/zinc binding YP_004434657.1 PFAM: Protein of unknown function DUF2185; KEGG: pap:PSPA7_2735 hypothetical protein YP_004434658.1 PFAM: protein of unknown function Spy-related; KEGG: pat:Patl_2300 protein of unknown function, Spy-related YP_004434659.1 KEGG: pat:Patl_2301 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004434660.1 KEGG: pat:Patl_2302 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004434661.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pat:Patl_2303 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004434662.1 PFAM: ferredoxin; KEGG: pat:Patl_2304 ferredoxin YP_004434663.1 PFAM: cytochrome P450; KEGG: pat:Patl_2305 cytochrome P450 YP_004434664.1 KEGG: pat:Patl_2306 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004434665.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_2307 zinc-binding alcohol dehydrogenase YP_004434666.1 PFAM: esterase; KEGG: pat:Patl_2308 esterase YP_004434667.1 KEGG: pat:Patl_2309 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004434668.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_2310 diguanylate cyclase; SMART: GGDEF domain containing protein; Tetratricopeptide repeat YP_004434669.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_2311 alcohol dehydrogenase GroES-like protein YP_004434670.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_2312 LysR family transcriptional regulator YP_004434671.1 PFAM: transcriptional regulator domain-containing protein; KEGG: pat:Patl_2313 response regulator receiver protein YP_004434672.1 KEGG: pat:Patl_2314 dentin sialophosphoprotein YP_004434673.1 KEGG: pat:Patl_2315 hypothetical protein YP_004434674.1 PFAM: peptidase C39 bacteriocin processing; KEGG: pat:Patl_2316 peptidase C39, bacteriocin processing YP_004434675.1 KEGG: pat:Patl_2317 hypothetical protein YP_004434676.1 KEGG: pat:Patl_2318 hypothetical protein YP_004434677.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2319 TonB-dependent receptor YP_004434678.1 PFAM: cyclase family protein; KEGG: pat:Patl_2320 cyclase YP_004434679.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_2321 3-hydroxyacyl-CoA dehydrogenase YP_004434680.1 PFAM: protein of unknown function DUF849; KEGG: pat:Patl_2322 hypothetical protein YP_004434681.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pat:Patl_2323 cupin 2, barrel YP_004434682.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_2324 short-chain dehydrogenase/reductase SDR YP_004434683.1 PFAM: Na+/solute symporter; KEGG: pat:Patl_2325 Na+/solute symporter YP_004434686.1 KEGG: pat:Patl_2326 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR ; regulatory protein IclR; SMART: regulatory protein IclR YP_004434687.1 PFAM: pseudouridine synthase; KEGG: pat:Patl_2328 pseudouridine synthase YP_004434688.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_2329 major facilitator transporter YP_004434689.1 KEGG: pat:Patl_2330 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004434690.1 KEGG: ngr:NAEGRDRAFT_62315 hypothetical protein YP_004434691.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cja:CJA_0929 TonB-dependent receptor YP_004434692.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_2331 LysR family transcriptional regulator YP_004434693.1 PFAM: class II aldolase/adducin family protein; KEGG: pat:Patl_2332 hypothetical protein YP_004434694.1 PFAM: peptidase M14 carboxypeptidase A; KEGG: pat:Patl_2333 hypothetical protein YP_004434695.1 KEGG: pat:Patl_2334 hypothetical protein YP_004434696.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pat:Patl_2335 metal dependent phosphohydrolase YP_004434697.1 PFAM: Excalibur domain protein; KEGG: pat:Patl_2336 hypothetical protein YP_004434698.1 KEGG: pat:Patl_2337 extracellular solute-binding protein; manually curated; PFAM: extracellular solute-binding protein family 3 YP_004434699.1 KEGG: pat:Patl_2338 alpha-glucosidase; manually curated; PFAM: glycoside hydrolase family 31 YP_004434700.1 PFAM: esterase; KEGG: pat:Patl_2339 esterase YP_004434701.1 KEGG: pat:Patl_2340 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004434702.1 PFAM: protein of unknown function DUF159; KEGG: spl:Spea_3873 hypothetical protein YP_004434703.1 KEGG: pat:Patl_2446 hypothetical protein YP_004434704.1 KEGG: shl:Shal_2645 hypothetical protein YP_004434705.1 KEGG: amc:MADE_01184 transcriptional regulator, MerR family protein; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004434706.1 KEGG: amc:MADE_01185 hypothetical protein YP_004434707.1 KEGG: pat:Patl_2444 hypothetical protein YP_004434708.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: pat:Patl_2448 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004434709.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; helix-hairpin-helix motif; KEGG: pat:Patl_2449 excinuclease ABC subunit C; SMART: Excinuclease ABC C subunit domain protein; Helix-hairpin-helix DNA-binding class 1 YP_004434710.1 KEGG: pat:Patl_2450 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR YP_004434711.1 PFAM: protein of unknown function UPF0005; KEGG: pat:Patl_2451 hypothetical protein YP_004434712.1 KEGG: pat:Patl_2452 DsrE-like protein; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein YP_004434713.1 KEGG: pat:Patl_2453 DsrE-like protein; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein YP_004434714.1 TIGRFAM: sulfur relay protein TusB/DsrH; KEGG: pat:Patl_2454 DsrH family protein YP_004434715.1 KEGG: pat:Patl_2455 DsrC-like protein; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein YP_004434716.1 TIGRFAM: seryl-tRNA synthetase; KEGG: pat:Patl_2456 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like YP_004434717.1 KEGG: pat:Patl_2457 CrcB protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein YP_004434718.1 KEGG: pat:Patl_2458 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_004434719.1 KEGG: pat:Patl_2459 outer membrane lipoprotein carrier protein LolA; TIGRFAM: outer membrane lipoprotein carrier protein LolA; PFAM: outer membrane lipoprotein carrier protein LolA YP_004434720.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: pat:Patl_2460 cell divisionFtsK/SpoIIIE YP_004434721.1 KEGG: pat:Patl_2461 leucine-responsive transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004434722.1 TIGRFAM: alanine dehydrogenase; KEGG: pat:Patl_2462 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein YP_004434723.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: pat:Patl_2463 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_004434724.1 KEGG: pat:Patl_2464 tetratricopeptide repeat protein YP_004434725.1 KEGG: pmu:PM0799 hypothetical protein YP_004434726.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pat:Patl_2465 integration host factor subunit beta; SMART: histone family protein DNA-binding protein YP_004434727.1 KEGG: pat:Patl_2466 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein YP_004434728.1 TIGRFAM: cytidylate kinase; KEGG: pat:Patl_2467 cytidylate kinase; PFAM: cytidylate kinase region YP_004434729.1 KEGG: pat:Patl_2468 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) YP_004434730.1 PFAM: aminotransferase class V; manually curated; KEGG: pat:Patl_2469 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase YP_004434731.1 KEGG: pat:Patl_2470 DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; manually curated; TIGRFAM: DNA gyrase, A subunit; SMART: DNA gyrase/topoisomerase IV subunit A YP_004434732.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: pat:Patl_2471 ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11 YP_004434733.1 KEGG: pat:Patl_2472 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004434734.1 KEGG: pat:Patl_2473 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ATP-cone domain protein YP_004434735.1 KEGG: pat:Patl_2474 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase YP_004434736.1 PFAM: ferredoxin; KEGG: pat:Patl_2475 ferredoxin YP_004434737.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: smt:Smal_2639 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004434738.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: pat:Patl_2476 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_004434739.1 KEGG: pat:Patl_2477 NlpBDapX lipoprotein YP_004434740.1 KEGG: pat:Patl_2478 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_004434741.1 KEGG: pat:Patl_2479 glycine cleavage system transcriptional repressor YP_004434742.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_2480 thioredoxin-dependent thiol peroxidase YP_004434743.1 PFAM: protein of unknown function UPF0118; KEGG: pat:Patl_2481 hypothetical protein YP_004434744.1 PFAM: peptidase M48 Ste24p; KEGG: pat:Patl_2482 peptidase M48, Ste24p YP_004434745.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_2483 redoxin YP_004434746.1 KEGG: pat:Patl_2484 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related YP_004434747.1 KEGG: pat:Patl_2485 flavodoxin/nitric oxide synthase; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase YP_004434748.1 PFAM: Protein of unknown function DUF2069, membrane; KEGG: pat:Patl_2486 hypothetical protein YP_004434749.1 KEGG: pat:Patl_2487 chromosomal replication initiator, DnaA; TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA YP_004434750.1 PFAM: Protein of unknown function DUF2066; KEGG: pat:Patl_2488 hypothetical protein YP_004434751.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: pat:Patl_2489 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_004434752.1 KEGG: pat:Patl_2490 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein YP_004434753.1 KEGG: pat:Patl_2491 hypothetical protein YP_004434754.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_2492 acyl-CoA dehydrogenase YP_004434755.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: pat:Patl_2493 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein YP_004434756.1 KEGG: pat:Patl_2494 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit YP_004434757.1 KEGG: pat:Patl_2495 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_004434758.1 KEGG: pat:Patl_2496 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20 YP_004434759.1 KEGG: pat:Patl_2497 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004434760.1 KEGG: pat:Patl_2498 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like YP_004434761.1 KEGG: pat:Patl_2499 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein YP_004434762.1 KEGG: pat:Patl_2501 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: short-chain dehydrogenase/reductase SDR YP_004434763.1 KEGG: pat:Patl_2502 hypothetical protein YP_004434764.1 KEGG: pat:Patl_2503 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_004434765.1 KEGG: pat:Patl_2504 cyclic nucleotide-binding protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: cyclic nucleotide-binding; CBS domain containing protein YP_004434766.1 KEGG: pat:Patl_2505 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_004434767.1 KEGG: pat:Patl_2506 hypothetical protein YP_004434769.1 PFAM: integrase family protein; KEGG: aeh:Mlg_0789 phage integrase family protein YP_004434770.1 KEGG: fps:FP1714 ATP-dependent endopeptidase La YP_004434771.1 KEGG: mlo:msr6186 hypothetical protein YP_004434772.1 KEGG: dme:Dmel_CG18490 CG18490 gene product from transcript CG18490-RB YP_004434773.1 KEGG: pap:PSPA7_5148 hypothetical protein YP_004434774.1 KEGG: tai:Taci_0358 methyl-accepting chemotaxis sensory transducer YP_004434775.1 KEGG: api:100162174 similar to OSIGBa0146N20.5 YP_004434776.1 KEGG: cbk:CLL_A0701 FliB family protein YP_004434777.1 PFAM: peptidase S14 ClpP; KEGG: apa:APP7_0491 Clp-like protease YP_004434778.1 KEGG: bte:BTH_II1955 methyl-accepting chemotaxis protein YP_004434779.1 KEGG: pag:PLES_13531 Clp protease YP_004434780.1 PFAM: HIRAN; KEGG: ppu:PP_3897 hypothetical protein YP_004434781.1 KEGG: pbe:PB000363.02.0 integral membrane protein YP_004434782.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: pap:PSPA7_0253 chemotaxis-specific methylesterase; SMART: response regulator receiver YP_004434783.1 PFAM: CheD family protein; KEGG: sbl:Sbal_2116 chemoreceptor glutamine deamidase CheD YP_004434784.1 PFAM: MCP methyltransferase CheR-type; KEGG: she:Shewmr4_2090 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase CheR-type YP_004434785.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: meh:M301_0856 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAC repeat-containing protein; PAS domain containing protein YP_004434786.1 KEGG: shm:Shewmr7_1882 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein YP_004434787.1 KEGG: amc:MADE_00412 probable two-component sensor (CheA); PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein YP_004434788.1 KEGG: son:SO_2120 chemotaxis protein CheY; PFAM: response regulator receiver; SMART: response regulator receiver YP_004434789.1 KEGG: shn:Shewana3_2220 response regulator receiver protein; PFAM: Stage II sporulation protein E; response regulator receiver; SMART: protein phosphatase 2C domain protein; response regulator receiver YP_004434790.1 KEGG: sbp:Sbal223_2095 SpoIIAA family protein YP_004434791.1 KEGG: shn:Shewana3_2222 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004434792.1 KEGG: pat:Patl_2507 hypothetical protein YP_004434793.1 KEGG: pat:Patl_2508 hypothetical protein YP_004434794.1 PFAM: sugar-specific permease EIIA 1 domain; KEGG: pat:Patl_2509 sugar-specific permease EIIA YP_004434795.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: pat:Patl_2510 twin-arginine translocation pathway signal YP_004434796.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: pat:Patl_2511 (2Fe-2S)-binding YP_004434797.1 KEGG: pat:Patl_2512 hypothetical protein YP_004434798.1 KEGG: pat:Patl_2513 hypothetical protein; PFAM: protein of unknown function DUF182 YP_004434799.1 PFAM: RDD domain containing protein; KEGG: pat:Patl_2514 RDD domain-containing protein YP_004434800.1 KEGG: pat:Patl_2515 hypothetical protein YP_004434801.1 KEGG: pat:Patl_2516 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_004434802.1 KEGG: pat:Patl_2517 cysteine synthase A; TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004434803.1 KEGG: pat:Patl_2518 lipoprotein YP_004434804.1 PFAM: protein of unknown function DUF1006; KEGG: pat:Patl_2519 hypothetical protein YP_004434805.1 PFAM: Rhomboid family protein; KEGG: pat:Patl_2522 rhomboid family membrane protein YP_004434806.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pat:Patl_2523 glutathione-dependent formaldehyde-activating, GFA YP_004434807.1 PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_1732 hypothetical protein YP_004434808.1 PFAM: CsbD family protein; KEGG: pat:Patl_1731 CsbD-like YP_004434809.1 KEGG: pat:Patl_1730 hypothetical protein YP_004434810.1 KEGG: pat:Patl_1728 hypoxanthine phosphoribosyltransferase YP_004434811.1 KEGG: pat:Patl_1727 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214 YP_004434812.1 KEGG: pat:Patl_1726 hypothetical protein YP_004434813.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; KEGG: pat:Patl_1725 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase domain protein YP_004434814.1 KEGG: pat:Patl_1724 hypothetical protein YP_004434815.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1723 TonB-dependent receptor YP_004434816.1 PFAM: Endoribonuclease L-PSP; KEGG: pat:Patl_1722 endoribonuclease L-PSP YP_004434817.1 PFAM: cytochrome c class I; KEGG: pat:Patl_1721 cytochrome c, class I YP_004434818.1 PFAM: amine oxidase; KEGG: pat:Patl_1720 twin-arginine translocation pathway signal YP_004434819.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1719 LysR family transcriptional regulator YP_004434820.1 PFAM: Domain of unknown function DUF1805; KEGG: pat:Patl_1718 hypothetical protein YP_004434821.1 KEGG: pat:Patl_1717 anion transporter; TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter YP_004434822.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pat:Patl_1716 beta-hexosaminidase YP_004434823.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pat:Patl_1715 NAD(+) kinase YP_004434824.1 KEGG: pat:Patl_1714 DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein YP_004434825.1 PFAM: SmpA/OmlA domain-containing protein; KEGG: pat:Patl_1713 SmpA/OmlA YP_004434826.1 KEGG: pat:Patl_1712 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434827.1 KEGG: pat:Patl_1711 hypothetical protein YP_004434828.1 KEGG: pat:Patl_1710 hypothetical protein YP_004434829.1 KEGG: pat:Patl_1709 ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain-containing protein; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein YP_004434830.1 PFAM: FeoA family protein; KEGG: pat:Patl_1708 hypothetical protein YP_004434831.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: pat:Patl_1707 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II YP_004434832.1 KEGG: pat:Patl_1706 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004434833.1 KEGG: pat:Patl_1705 PqiA family integral membrane protein; TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A YP_004434834.1 PFAM: Mammalian cell entry related domain protein; KEGG: pat:Patl_1704 hypothetical protein YP_004434835.1 PFAM: protein of unknown function DUF330; KEGG: pat:Patl_1703 hypothetical protein YP_004434836.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1702 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434837.1 KEGG: pat:Patl_1701 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_004434838.1 KEGG: pat:Patl_1700 hypothetical protein YP_004434839.1 KEGG: pat:Patl_1699 hypothetical protein YP_004434840.1 KEGG: pat:Patl_4011 hypothetical protein YP_004434841.1 KEGG: pat:Patl_1698 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15 YP_004434842.1 KEGG: pat:Patl_1697 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B YP_004434843.1 KEGG: pat:Patl_1696 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A YP_004434844.1 KEGG: pat:Patl_1695 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; Initiation factor 2 associated domain protein ; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein YP_004434845.1 KEGG: pat:Patl_1694 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain-containing protein; RNA binding S1 domain protein YP_004434846.1 PFAM: protein of unknown function DUF150; KEGG: pat:Patl_1693 hypothetical protein YP_004434847.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: pat:Patl_1692 transcriptional coactivator/pterin dehydratase YP_004434848.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1691 TonB-dependent receptor YP_004434849.1 PFAM: MaoC domain protein dehydratase; KEGG: pat:Patl_1690 MaoC-like dehydratase YP_004434850.1 PFAM: Peptidase M23; KEGG: pat:Patl_1689 peptidase M23B YP_004434851.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_1688 acyl-CoA dehydrogenase YP_004434852.1 KEGG: amc:MADE_00134 hypothetical protein YP_004434853.1 PFAM: aminotransferase class V; KEGG: pat:Patl_1687 twin-arginine translocation pathway signal YP_004434854.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_1686 mandelate racemase/muconate lactonizing-like protein YP_004434855.1 PFAM: class II aldolase/adducin family protein; KEGG: pat:Patl_1685 class II aldolase/adducin-like YP_004434856.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pat:Patl_1684 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004434857.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: pat:Patl_1683 phytanoyl-CoA dioxygenase YP_004434858.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1682 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434859.1 KEGG: pat:Patl_1681 hypothetical protein YP_004434860.1 PFAM: peptidase M28; Fibronectin type III domain protein; KEGG: pat:Patl_1679 peptidase M28 YP_004434861.1 PFAM: DoxX family protein; KEGG: pat:Patl_1677 DoxX YP_004434862.1 PFAM: Pirin domain protein; KEGG: pat:Patl_1676 pirin-like YP_004434863.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1675 LysR family transcriptional regulator YP_004434864.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pat:Patl_1674 zinc-binding alcohol dehydrogenase YP_004434865.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1673 LysR family transcriptional regulator YP_004434866.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: pat:Patl_1672 hypothetical protein YP_004434867.1 PFAM: Modulator of Rho-dependent transcription termination; KEGG: pat:Patl_1671 transcriptional antiterminator, Rof YP_004434868.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; KEGG: pat:Patl_1670 signal recognition particle protein; SMART: AAA ATPase YP_004434869.1 PFAM: cytochrome c assembly protein; KEGG: pat:Patl_1669 cytochrome c assembly protein YP_004434870.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: pat:Patl_1668 hypothetical protein YP_004434871.1 KEGG: bta:617691 chromosome 14 open reading frame 38 ortholog YP_004434872.1 KEGG: pat:Patl_1667 phosphohistidine phosphatase, SixA; TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase YP_004434873.1 PFAM: peptidase M16 domain protein; KEGG: pat:Patl_1666 peptidase M16-like YP_004434874.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; Two component regulator three Y domain-containing protein; Two component regulator propeller; PAS fold-3 domain protein; PAS fold domain protein; KEGG: pat:Patl_1665 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein YP_004434875.1 KEGG: amc:MADE_02698 hypothetical protein YP_004434876.1 KEGG: pat:Patl_1664 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein YP_004434877.1 TIGRFAM: acetyl-CoA C-acyltransferase FadI; acetyl-CoA acetyltransferase; KEGG: pat:Patl_1663 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like YP_004434878.1 PFAM: ATPase associated with various cellular activities AAA_3; KEGG: pat:Patl_1662 ATPase YP_004434879.1 PFAM: protein of unknown function DUF58; KEGG: pat:Patl_1661 hypothetical protein YP_004434880.1 KEGG: pat:Patl_1660 hypothetical protein YP_004434881.1 KEGG: pat:Patl_1659 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A YP_004434882.1 KEGG: pat:Patl_1658 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; von Willebrand factor type A YP_004434883.1 KEGG: pat:Patl_1657 BatD protein YP_004434884.1 KEGG: pat:Patl_1656 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004434885.1 manually curated; KEGG: pat:Patl_1655 hypothetical protein YP_004434886.1 KEGG: pat:Patl_1654 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase YP_004434887.1 KEGG: pat:Patl_1653 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004434888.1 KEGG: pat:Patl_1652 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein YP_004434889.1 KEGG: pat:Patl_1651 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase YP_004434890.1 TIGRFAM: adenylylsulfate kinase; KEGG: pat:Patl_1650 adenylylsulfate kinase; PFAM: adenylylsulfate kinase YP_004434891.1 KEGG: pat:Patl_1649 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase YP_004434892.1 TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: pat:Patl_1648 sulfate adenylyltransferase subunit 1; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_004434893.1 PFAM: TrkA-C domain protein; Citrate transporter; KEGG: pat:Patl_1647 TrkA-C YP_004434894.1 KEGG: pat:Patl_1646 pseudouridine synthase, Rsu; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_004434895.1 PFAM: protein of unknown function DUF349; KEGG: pat:Patl_1645 hypothetical protein YP_004434896.1 PFAM: protein of unknown function DUF1315; KEGG: pat:Patl_1644 hypothetical protein YP_004434897.1 KEGG: pat:Patl_1643 hypothetical protein YP_004434898.1 KEGG: pat:Patl_1642 amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter YP_004434899.1 KEGG: pat:Patl_1641 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_004434900.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pat:Patl_1640 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004434901.1 KEGG: pat:Patl_1639 hypothetical protein YP_004434902.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: pat:Patl_1638 methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_004434903.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; KEGG: pat:Patl_1637 glycogen debranching enzyme GlgX; SMART: alpha amylase catalytic sub domain YP_004434904.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; KEGG: pat:Patl_1636 glycogen branching enzyme; SMART: alpha amylase catalytic sub domain YP_004434905.1 TIGRFAM: 4-alpha-glucanotransferase; KEGG: pat:Patl_1635 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77 YP_004434906.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: pat:Patl_1634 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004434907.1 PFAM: Aldose 1-epimerase; KEGG: pat:Patl_1633 aldose 1-epimerase YP_004434908.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: pat:Patl_1632 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein YP_004434909.1 KEGG: pat:Patl_1631 hypothetical protein YP_004434910.1 PFAM: pseudouridine synthase; KEGG: pat:Patl_1630 pseudouridylate synthase YP_004434911.1 PFAM: protein of unknown function DUF195; KEGG: pat:Patl_1629 hypothetical protein YP_004434912.1 KEGG: pat:Patl_1628 tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; Fe-S type hydro-lyase tartrate/fumarate alpha region YP_004434913.1 KEGG: pat:Patl_1627 para-aminobenzoate synthase, subunit I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_004434914.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_1626 NUDIX hydrolase YP_004434915.1 TIGRFAM: L-serine dehydratase 1; KEGG: pat:Patl_1625 L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain YP_004434916.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1624 transcriptional regulator CysB YP_004434917.1 KEGG: pat:Patl_1623 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004434918.1 KEGG: pat:Patl_1622 hypothetical protein YP_004434919.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1621 LysR family transcriptional regulator YP_004434920.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; KEGG: pat:Patl_1620 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase YP_004434921.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; KEGG: pat:Patl_1619 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase YP_004434922.1 KEGG: pat:Patl_1618 DEAD/DEAH box helicase-like; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004434923.1 PFAM: nitroreductase; KEGG: pat:Patl_1617 nitroreductase YP_004434924.1 PFAM: DoxX family protein; KEGG: pat:Patl_1616 DoxX YP_004434925.1 KEGG: pat:Patl_1615 HAD superfamily hydrolase-like; manually curated; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004434926.1 KEGG: pat:Patl_1614 tRNA-hydroxylase; manually curated; PFAM: tRNA-hydroxylase YP_004434927.1 PFAM: protein of unknown function DUF1282; KEGG: pat:Patl_1610 hypothetical protein YP_004434928.1 KEGG: pat:Patl_1609 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase YP_004434929.1 PFAM: Colicin V production protein; KEGG: pat:Patl_1608 colicin V production protein YP_004434930.1 PFAM: Sporulation domain-containing protein; KEGG: pat:Patl_1607 sporulation related YP_004434931.1 TIGRFAM: FolC bifunctional protein; KEGG: pat:Patl_1606 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein YP_004434932.1 KEGG: pat:Patl_1605 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: carboxyl transferase YP_004434933.1 KEGG: pat:Patl_1604 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_004434934.1 KEGG: pat:Patl_1603 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase YP_004434935.1 KEGG: pat:Patl_1602 hypothetical protein YP_004434936.1 KEGG: pat:Patl_1601 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004434937.1 KEGG: pat:Patl_1600 hypothetical protein YP_004434938.1 KEGG: pat:Patl_1599 hypothetical protein YP_004434939.1 KEGG: pat:Patl_1598 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_004434940.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_1597 binding-protein-dependent transport systems inner membrane component YP_004434941.1 PFAM: extracellular solute-binding protein family 1; KEGG: pat:Patl_1596 extracellular solute-binding protein YP_004434942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1595 GCN5-related N-acetyltransferase YP_004434943.1 KEGG: pat:Patl_1594 response regulator receiver protein; PFAM: response regulator receiver; Stage II sporulation protein E; SMART: response regulator receiver; protein phosphatase 2C domain protein YP_004434944.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pat:Patl_1593 anti-sigma-factor antagonist YP_004434945.1 KEGG: pat:Patl_1592 translation initiation factor SUI1; TIGRFAM: translation initiation factor SUI1; PFAM: translation initiation factor SUI1 YP_004434946.1 KEGG: pat:Patl_1591 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004434947.1 KEGG: pat:Patl_1590 chorismate mutase; TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein YP_004434948.1 PFAM: protein of unknown function DUF1275; KEGG: pat:Patl_1589 hypothetical protein YP_004434949.1 TIGRFAM: chorismate mutase; KEGG: pat:Patl_1588 bifunctional chorismate mutase/prephenate dehydrogenase; PFAM: Chorismate mutase, type II; Prephenate dehydrogenase YP_004434950.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: pat:Patl_1587 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_004434951.1 KEGG: pat:Patl_1586 peptidyl-dipeptidase DCP; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004434952.1 manually curated; KEGG: pat:Patl_1584 hexapaptide repeat-containing transferase YP_004434953.1 KEGG: pat:Patl_1583 SAM-dependent methyltransferase; PFAM: protein of unknown function DUF890 YP_004434954.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: pat:Patl_1582 MerR family transcriptional regulator; SMART: regulatory protein MerR YP_004434955.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1581 glyoxalase family protein YP_004434956.1 KEGG: pat:Patl_1580 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19 YP_004434957.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: pat:Patl_1579 tRNA (guanine-N(1)-)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_004434958.1 KEGG: pat:Patl_1578 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein YP_004434959.1 KEGG: pat:Patl_1577 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16 YP_004434960.1 KEGG: pat:Patl_1576 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004434961.1 KEGG: pat:Patl_1575 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004434962.1 TIGRFAM: triosephosphate isomerase; KEGG: pat:Patl_1574 triosephosphate isomerase; PFAM: triosephosphate isomerase YP_004434963.1 KEGG: pat:Patl_1573 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_004434964.1 PFAM: dihydropteroate synthase DHPS; manually curated; KEGG: pat:Patl_1572 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase YP_004434965.1 KEGG: pat:Patl_1571 ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; manually curated; TIGRFAM: ATP-dependent metalloprotease FtsH; SMART: AAA ATPase YP_004434966.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pat:Patl_1570 ribosomal RNA methyltransferase RrmJ/FtsJ YP_004434967.1 PFAM: protein of unknown function UPF0044; KEGG: pat:Patl_1569 hypothetical protein YP_004434968.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pat:Patl_1568 peptidylprolyl isomerase, FKBP-type YP_004434969.1 KEGG: pat:Patl_1567 peptidase S16, lon-like YP_004434970.1 KEGG: amc:MADE_01671 hypothetical protein YP_004434971.1 KEGG: pat:Patl_1566 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase YP_004434972.1 PFAM: Rare lipoprotein B; KEGG: pat:Patl_1565 rare lipoprotein B YP_004434973.1 TIGRFAM: DNA polymerase III, delta subunit; KEGG: pat:Patl_1564 DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta YP_004434974.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; KEGG: pat:Patl_1563 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_004434975.1 KEGG: pat:Patl_1562 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein YP_004434976.1 PFAM: protein of unknown function DUF163; KEGG: pat:Patl_1561 rRNA large subunit methyltransferase YP_004434977.1 TIGRFAM: penicillin-binding protein 2; KEGG: pat:Patl_1560 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_004434978.1 KEGG: pat:Patl_1559 rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein YP_004434979.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pat:Patl_1558 lytic murein transglycosylase B YP_004434980.1 KEGG: pat:Patl_1557 rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein YP_004434981.1 KEGG: pat:Patl_1556 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein YP_004434982.1 PFAM: protein of unknown function DUF493; KEGG: pat:Patl_1555 hypothetical protein YP_004434983.1 TIGRFAM: lipoate-protein ligase B; KEGG: pat:Patl_1554 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase YP_004434984.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: pat:Patl_1553 lipoyl synthase; PFAM: Radical SAM domain protein YP_004434985.1 KEGG: pat:Patl_1551 hypothetical protein YP_004434986.1 PFAM: protein of unknown function DUF985; KEGG: pat:Patl_1550 hypothetical protein YP_004434987.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: slo:Shew_3023 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004434988.1 KEGG: pat:Patl_1548 hypothetical protein YP_004434989.1 PFAM: protein of unknown function DUF1255; KEGG: pat:Patl_1547 hypothetical protein YP_004434990.1 KEGG: pat:Patl_1546 dienelactone hydrolase YP_004434991.1 KEGG: pat:Patl_1545 hypothetical protein YP_004434992.1 KEGG: pat:Patl_1544 cytoplasmic asparaginase I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_004434993.1 KEGG: pat:Patl_1543 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004434994.1 KEGG: pat:Patl_1542 major facilitator transporter; manually curated; PFAM: major facilitator superfamily MFS_1 YP_004434995.1 PFAM: chorismate synthase; manually curated; KEGG: pat:Patl_1541 chorismate synthase; TIGRFAM: chorismate synthase YP_004434996.1 KEGG: pat:Patl_1540 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_004434997.1 KEGG: pat:Patl_1539 Smr protein/MutS2; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2 YP_004434998.1 KEGG: pat:Patl_1538 response regulator receiver modulated diguanylate phosphodiesterase; PFAM: EAL domain protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver YP_004434999.1 KEGG: ote:Oter_0259 hypothetical protein YP_004435000.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: response regulator receiver; KEGG: pat:Patl_1537 response regulator receiver protein; SMART: response regulator receiver YP_004435001.1 KEGG: pat:Patl_1536 phosphonate ABC transporter, periplasmic phosphonate-binding protein YP_004435002.1 KEGG: pat:Patl_1535 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein YP_004435003.1 KEGG: pat:Patl_1534 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004435004.1 KEGG: pat:Patl_1533 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004435005.1 PFAM: Heme NO binding domain protein; KEGG: pat:Patl_1532 4-vinyl reductase, 4VR YP_004435006.1 KEGG: pat:Patl_1531 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase YP_004435007.1 KEGG: pat:Patl_1530 hypothetical protein YP_004435008.1 KEGG: pat:Patl_1529 hypothetical protein YP_004435009.1 KEGG: pat:Patl_1528 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004435010.1 KEGG: pat:Patl_1527 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004435011.1 KEGG: pat:Patl_1526 hypothetical protein YP_004435012.1 KEGG: pat:Patl_1525 hypothetical protein YP_004435013.1 KEGG: pat:Patl_1524 thiopurine S-methyltransferase; PFAM: thiopurine S-methyltransferase YP_004435014.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_1523 NUDIX hydrolase YP_004435015.1 manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: pat:Patl_1522 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2 YP_004435016.1 KEGG: pat:Patl_1521 FecR; manually curated; PFAM: FecR protein YP_004435017.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: pat:Patl_1520 TonB-dependent receptor YP_004435018.1 KEGG: pat:Patl_1519 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_004435019.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1517 GCN5-related N-acetyltransferase YP_004435020.1 KEGG: sdn:Sden_2946 rod shape-determining-related protein YP_004435021.1 KEGG: cgt:cgR_1473 hypothetical protein YP_004435022.1 KEGG: pat:Patl_1948 hypothetical protein YP_004435023.1 KEGG: swp:swp_4663 hypothetical protein YP_004435024.1 KEGG: rpb:RPB_3836 hypothetical protein YP_004435025.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_2775 hypothetical protein YP_004435026.1 KEGG: pat:Patl_2776 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004435027.1 manually curated; TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pat:Patl_2777 RND family efflux transporter MFP subunit; PFAM: secretion protein HlyD family protein YP_004435028.1 KEGG: pat:Patl_2778 succinylglutamate desuccinylase/aspartoacylase; manually curated; PFAM: Succinylglutamate desuccinylase/aspartoacylase YP_004435029.1 KEGG: pat:Patl_2779 alpha-L-glutamate ligase; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp YP_004435030.1 KEGG: pat:Patl_2780 hypothetical protein YP_004435031.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: pat:Patl_2781 glucose-methanol-choline oxidoreductase YP_004435032.1 KEGG: pat:Patl_2782 prolyl oligopeptidase; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller YP_004435033.1 KEGG: pat:Patl_2784 hypothetical protein YP_004435034.1 PFAM: Auxin Efflux Carrier; KEGG: pat:Patl_2785 auxin efflux carrier YP_004435035.1 KEGG: pat:Patl_2786 peptidyl-dipeptidase DCP; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004435036.1 TIGRFAM: amidohydrolase; KEGG: pat:Patl_2787 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004435037.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_2788 LysR family transcriptional regulator YP_004435038.1 PFAM: protein of unknown function DUF1611; KEGG: pat:Patl_2789 hypothetical protein YP_004435039.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_2790 mandelate racemase/muconate lactonizing-like protein YP_004435040.1 KEGG: pat:Patl_2791 hypothetical protein YP_004435041.1 KEGG: sfr:Sfri_1298 TPR repeat-containing protein YP_004435042.1 KEGG: amc:MADE_01568 unknown lipoprotein YP_004435043.1 KEGG: sfr:Sfri_1296 hypothetical protein YP_004435044.1 PFAM: Anti-sigma K factor RskA; KEGG: sfr:Sfri_1295 hypothetical protein YP_004435045.1 KEGG: sfr:Sfri_1294 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004435046.1 PFAM: glycosyl transferase family 2; KEGG: pat:Patl_2792 glucosyltransferase MdoH YP_004435047.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: pat:Patl_2793 glucan biosynthesis protein G YP_004435048.1 TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: fatty acid responsive transcription factor FadR domain protein; regulatory protein GntR HTH; KEGG: pat:Patl_2794 fatty acid metabolism regulator; SMART: regulatory protein GntR HTH YP_004435049.1 KEGG: pat:Patl_2795 sodium/proton antiporter; TIGRFAM: Na+/H+ antiporter NhaB; PFAM: Na+H+ antiporter NhaB YP_004435050.1 PFAM: Disulphide bond formation protein DsbB; KEGG: pat:Patl_2796 disulphide bond formation protein DsbB YP_004435051.1 KEGG: rhi:NGR_b18890 hypothetical protein YP_004435052.1 KEGG: atu:Atu6016 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin YP_004435053.1 KEGG: pha:PSHAb0542 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004435054.1 PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: pat:Patl_2797 deoxyribodipyrimidine photolyase-related protein YP_004435055.1 KEGG: pat:Patl_2799 hypothetical protein YP_004435056.1 PFAM: protein of unknown function UPF0153; KEGG: pat:Patl_2798 hypothetical protein YP_004435057.1 KEGG: pat:Patl_2799 hypothetical protein YP_004435058.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pat:Patl_2800 fumarylacetoacetate (FAA) hydrolase YP_004435059.1 TIGRFAM: lytic murein transglycosylase; KEGG: pat:Patl_2801 lytic murein transglycosylase YP_004435060.1 PFAM: protein of unknown function DUF709; KEGG: pat:Patl_2802 hypothetical protein YP_004435061.1 SMART: 3'-5' exonuclease; HRDC domain protein; TIGRFAM: ribonuclease D; KEGG: pat:Patl_2803 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein YP_004435062.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_2804 AMP-dependent synthetase and ligase YP_004435063.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_2805 alpha/beta hydrolase fold YP_004435064.1 KEGG: pat:Patl_2806 Slp family outer membrane lipoprotein; TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp YP_004435065.1 KEGG: pat:Patl_2807 hypothetical protein YP_004435066.1 PFAM: peptidase M22 glycoprotease; KEGG: pat:Patl_2808 peptidase M22, glycoprotease YP_004435067.1 SMART: helicase c2; DEAD-like helicase ; Helicase-like, DEXD box c2 type; KEGG: pat:Patl_2809 helicase C2 YP_004435068.1 KEGG: dhd:Dhaf_0502 diguanylate cyclase YP_004435069.1 KEGG: pat:Patl_2810 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004435070.1 KEGG: pat:Patl_2811 hypothetical protein YP_004435071.1 PFAM: flagellar L-ring protein; KEGG: pat:Patl_2812 flagellar L-ring protein YP_004435072.1 KEGG: pat:Patl_2813 hypothetical protein YP_004435073.1 KEGG: coc:Coch_0288 hypothetical protein YP_004435074.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: spl:Spea_3443 hypothetical protein YP_004435075.1 KEGG: dze:Dd1591_2817 hypothetical protein YP_004435076.1 PFAM: Cell wall assembly/cell proliferation coordinating protein, KNR4-like; KEGG: pap:PSPA7_2736 hypothetical protein YP_004435077.1 KEGG: sbn:Sbal195_4264 hypothetical protein YP_004435078.1 KEGG: she:Shewmr4_3018 hypothetical protein YP_004435079.1 KEGG: clj:CLJU_c16220 hypothetical protein YP_004435080.1 PFAM: protein of unknown function YqcI/YcgG; KEGG: pat:Patl_0917 hypothetical protein YP_004435081.1 PFAM: Domain of unknown function DUF1989; KEGG: pat:Patl_0918 hypothetical protein YP_004435082.1 KEGG: pat:Patl_0919 hypothetical protein YP_004435083.1 KEGG: amc:MADE_02384 hypothetical protein YP_004435085.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0912 short-chain dehydrogenase/reductase SDR YP_004435086.1 KEGG: ppa:PAS_chr1-3_0252 DNA-binding protein involved in either activation or repression of transcription YP_004435087.1 TIGRFAM: methionine aminopeptidase, type I; KEGG: pat:Patl_1471 methionine aminopeptidase, type I; PFAM: peptidase M24 YP_004435088.1 KEGG: pat:Patl_1470 hypothetical protein YP_004435089.1 PFAM: homocysteine S-methyltransferase; KEGG: pat:Patl_2815 homocysteine S-methyltransferase YP_004435090.1 KEGG: pat:Patl_2816 hypothetical protein YP_004435091.1 PFAM: NHL repeat containing protein; KEGG: amc:MADE_01691 serine rich repeat containing protein YP_004435092.1 KEGG: pat:Patl_2818 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004435093.1 KEGG: pat:Patl_2819 porin family outer membrane protein YP_004435094.1 KEGG: pat:Patl_2820 hypothetical protein YP_004435095.1 KEGG: pfo:Pfl01_0472 hypothetical protein YP_004435096.1 KEGG: pat:Patl_2821 hypothetical protein YP_004435097.1 KEGG: pat:Patl_2821 hypothetical protein YP_004435098.1 KEGG: phe:Phep_0714 fibronectin type III domain protein YP_004435099.1 KEGG: amc:MADE_01316 hypothetical protein YP_004435100.1 KEGG: pat:Patl_1211 HPr kinase YP_004435101.1 KEGG: pat:Patl_1212 hypothetical protein YP_004435102.1 KEGG: pat:Patl_1948 hypothetical protein YP_004435103.1 KEGG: amc:MADE_00176 chromosome replication initiation inhibitor protein; TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding YP_004435104.1 KEGG: amc:MADE_00177 arginine exporter protein; manually curated; PFAM: Lysine exporter protein (LYSE/YGGA) YP_004435105.1 manually curated; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: pat:Patl_2824 pseudouridine synthase, Rsu; SMART: RNA-binding S4 domain protein YP_004435106.1 KEGG: pat:Patl_2825 transcriptional regulator; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB YP_004435107.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: pat:Patl_2826 chromosome segregation and condensation protein ScpA YP_004435108.1 KEGG: pat:Patl_2827 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain YP_004435109.1 KEGG: pat:Patl_2828 PHP-like; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_004435110.1 KEGG: pat:Patl_2829 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein YP_004435111.1 KEGG: pat:Patl_2830 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I YP_004435112.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: pat:Patl_2831 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_004435113.1 KEGG: pat:Patl_2832 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; PFAM: Indole-3-glycerol phosphate synthase; N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004435114.1 KEGG: pat:Patl_2833 tryptophan synthase subunit beta; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_004435115.1 TIGRFAM: tryptophan synthase, alpha subunit; KEGG: pat:Patl_2834 tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_004435116.1 PFAM: YCII-related; KEGG: pat:Patl_2835 YCII-related YP_004435117.1 PFAM: Class I peptide chain release factor; KEGG: pat:Patl_2836 class I peptide chain release factor YP_004435118.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: pat:Patl_2839 peptidase YP_004435119.1 KEGG: pat:Patl_2840 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004435120.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_2841 periplasmic sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein YP_004435121.1 manually curated; KEGG: eck:EC55989_4831 exported surface protein precursor YP_004435122.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cvi:CV_1391 transcriptional regulator YP_004435123.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_2842 MscS mechanosensitive ion channel YP_004435124.1 KEGG: pat:Patl_2843 hypothetical protein YP_004435125.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; KEGG: pat:Patl_2844 oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_004435126.1 PFAM: formate dehydrogenase subunit FdhD; KEGG: pat:Patl_2845 formate dehydrogenase, subunit FdhD YP_004435127.1 PFAM: protein of unknown function DUF81; KEGG: pat:Patl_2846 hypothetical protein YP_004435128.1 PFAM: Protein of unknown function DUF2244, transmembrane; KEGG: pat:Patl_2847 hypothetical protein YP_004435129.1 KEGG: pat:Patl_2848 hypothetical protein YP_004435130.1 KEGG: pat:Patl_2849 beta-lactamase-like YP_004435131.1 PFAM: Protein of unknown function DUF2059; KEGG: pat:Patl_2850 hypothetical protein YP_004435132.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: spl:Spea_2361 TonB-dependent receptor YP_004435133.1 PFAM: DNA topoisomerase I catalytic core domain protein; KEGG: pat:Patl_2853 hypothetical protein YP_004435134.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_2854 TetR family transcriptional regulator YP_004435135.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_2855 zinc-binding alcohol dehydrogenase YP_004435136.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_2857 GCN5-related N-acetyltransferase YP_004435137.1 KEGG: pat:Patl_2858 hypothetical protein YP_004435138.1 KEGG: pat:Patl_2860 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004435139.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: pat:Patl_1456 ABC transporter related; SMART: AAA ATPase YP_004435140.1 TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: pat:Patl_1455 ABC transporter related; SMART: AAA ATPase YP_004435141.1 KEGG: pat:Patl_1454 cyd operon protein YbgT; TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein YP_004435142.1 KEGG: pat:Patl_1453 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_004435143.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pat:Patl_1452 cytochrome bd ubiquinol oxidase, subunit I YP_004435144.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_1451 lysine exporter protein LysE/YggA YP_004435145.1 KEGG: pat:Patl_1450 hypothetical protein YP_004435146.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mmw:Mmwyl1_2948 GCN5-related N-acetyltransferase YP_004435147.1 TIGRFAM: cytochrome C family protein; KEGG: pat:Patl_1449 tetratricopeptide TPR_2 YP_004435148.1 TIGRFAM: homogentisate 1,2-dioxygenase; KEGG: amc:MADE_02539 homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase YP_004435149.1 TIGRFAM: fumarylacetoacetase; KEGG: pat:Patl_1123 fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase YP_004435150.1 KEGG: pat:Patl_1448 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain YP_004435151.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pat:Patl_1447 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004435152.1 PFAM: GCN5-related N-acetyltransferase; KEGG: amc:MADE_00606 histone acetyltransferase HPA2/related acetyltransferase YP_004435153.1 KEGG: pat:Patl_1446 hypothetical protein YP_004435154.1 PFAM: short chain fatty acid transporter; KEGG: pat:Patl_1445 short chain fatty acid transporter YP_004435155.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bra:BRADO2417 hypothetical protein YP_004435156.1 PFAM: regulatory protein TetR; KEGG: nar:Saro_0992 TetR family transcriptional regulator YP_004435157.1 KEGG: pat:Patl_1441 hypothetical protein YP_004435158.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1440 LysR family transcriptional regulator YP_004435159.1 KEGG: sde:Sde_1176 agarase YP_004435160.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: sde:Sde_1177 threonine synthase YP_004435161.1 KEGG: sfr:Sfri_3430 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_004435162.1 TIGRFAM: S-formylglutathione hydrolase; KEGG: pat:Patl_1439 carboxylesterase; PFAM: esterase YP_004435163.1 KEGG: pat:Patl_1438 zinc-binding alcohol dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein YP_004435164.1 KEGG: pat:Patl_1437 small multidrug resistance protein; manually curated; PFAM: small multidrug resistance protein YP_004435165.1 KEGG: pat:Patl_1436 LysR family transcriptional regulator; manually curated; PFAM: LysR substrate-binding; regulatory protein LysR YP_004435166.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1435 glyoxalase/bleomycin resistance protein/dioxygenase YP_004435167.1 KEGG: pat:Patl_1434 ferredoxin-dependent glutamate synthase; PFAM: ferredoxin-dependent glutamate synthase YP_004435168.1 PFAM: protein of unknown function DUF1212; KEGG: pat:Patl_1433 hypothetical protein YP_004435169.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_1432 short-chain dehydrogenase/reductase SDR YP_004435170.1 KEGG: pat:Patl_1431 lyase precursor-like YP_004435171.1 KEGG: pat:Patl_1430 lipoprotein YP_004435172.1 KEGG: pat:Patl_1429 hypothetical protein YP_004435173.1 KEGG: pat:Patl_1428 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain YP_004435174.1 KEGG: pat:Patl_1427 ethanolamine ammonia lyase large subunit; PFAM: Ethanolamine ammonia lyase large subunit YP_004435175.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pat:Patl_1426 alcohol dehydrogenase GroES-like protein YP_004435176.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pat:Patl_1425 NADH:flavin oxidoreductase/NADH oxidase YP_004435177.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1424 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004435178.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_1423 major facilitator transporter YP_004435179.1 KEGG: pat:Patl_1422 AcnD-accessory protein PrpF; TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453 YP_004435180.1 KEGG: pat:Patl_1421 aconitate hydratase; TIGRFAM: 2-methylisocitrate dehydratase, Fe/S-dependent; PFAM: aconitate hydratase domain-containing protein YP_004435181.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: pat:Patl_1420 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_004435182.1 KEGG: pat:Patl_1419 2-methylisocitrate lyase; TIGRFAM: methylisocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase YP_004435183.1 KEGG: pat:Patl_1418 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004435184.1 PFAM: DNA polymerase beta domain protein region; KEGG: vsp:VS_II0104 plasmid-related protein YP_004435185.1 KEGG: tet:TTHERM_01306870 hypothetical protein YP_004435186.1 KEGG: vsa:VSAL_I1646 hypothetical protein, phage gene YP_004435187.1 KEGG: pat:Patl_1413 virulence gene repressor RsaL YP_004435188.1 KEGG: pat:Patl_1412 hypothetical protein YP_004435189.1 PFAM: sulfatase; KEGG: caa:Caka_0377 sulfatase YP_004435190.1 KEGG: sde:Sde_1263 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435191.1 KEGG: pat:Patl_1407 hypothetical protein YP_004435192.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_1408 acyl-CoA dehydrogenase-like YP_004435193.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_1406 short-chain dehydrogenase/reductase SDR YP_004435194.1 PFAM: protein of unknown function UPF0075; KEGG: pat:Patl_2903 anhydro-N-acetylmuramic acid kinase YP_004435195.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2904 TonB-dependent receptor YP_004435196.1 KEGG: eba:ebA5826 hypothetical protein; manually curated; PFAM: protein of unknown function DUF599 YP_004435197.1 PFAM: small multidrug resistance protein; KEGG: pat:Patl_1403 small multidrug resistance protein YP_004435198.1 TIGRFAM: lactoylglutathione lyase; KEGG: pat:Patl_1402 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_004435199.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pat:Patl_1401 glycerophosphodiester phosphodiesterase YP_004435200.1 PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_1400 OmpA/MotB YP_004435201.1 TIGRFAM: ribonuclease T; PFAM: Exonuclease RNase T and DNA polymerase III; KEGG: pat:Patl_1399 ribonuclease T; SMART: Exonuclease YP_004435202.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; KEGG: pat:Patl_1398 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_004435203.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pat:Patl_1397 BFD-like (2Fe-2S)-binding region YP_004435204.1 KEGG: pat:Patl_1396 glutaredoxin-like protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin YP_004435205.1 KEGG: pat:Patl_1395 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase-like YP_004435206.1 KEGG: pat:Patl_1394 serine protein kinase, PrkA; PFAM: PrkA AAA domain protein; PrkA serine kinase; SMART: PrkA AAA domain protein YP_004435207.1 PFAM: protein of unknown function DUF444; KEGG: pat:Patl_1393 hypothetical protein YP_004435208.1 PFAM: SpoVR family protein; KEGG: pat:Patl_1392 SpoVR family protein YP_004435209.1 PFAM: Protein of unknown function DUF2132; KEGG: pat:Patl_1391 hypothetical protein YP_004435210.1 PFAM: protein of unknown function DUF45; KEGG: pat:Patl_1390 hypothetical protein YP_004435211.1 PFAM: Uncharacterised conserved protein UCP006287; KEGG: pat:Patl_1389 hypothetical protein YP_004435212.1 KEGG: pat:Patl_3781 hypothetical protein YP_004435213.1 KEGG: nwa:Nwat_2562 hypothetical protein YP_004435214.1 manually curated; KEGG: cbl:CLK_1299 hypothetical protein YP_004435215.1 manually curated; KEGG: rso:RS04819 lipoprotein transmembrane YP_004435216.1 KEGG: cel:T01C2.1 Adenylyl CYclase YP_004435217.1 KEGG: caa:Caka_2196 hypothetical protein YP_004435218.1 KEGG: pat:Patl_1379 alkaline phosphatase YP_004435219.1 PFAM: sodium/hydrogen exchanger; KEGG: pat:Patl_1377 sodium/hydrogen exchanger YP_004435220.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: pat:Patl_1376 Na+/H+ antiporter NhaC YP_004435221.1 KEGG: pat:Patl_1375 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004435222.1 PFAM: protein of unknown function DUF336; KEGG: pat:Patl_1374 hypothetical protein YP_004435223.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_1373 aldo/keto reductase YP_004435224.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1372 LysR family transcriptional regulator YP_004435225.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pat:Patl_1371 NADH:flavin oxidoreductase/NADH oxidase YP_004435226.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_1370 enoyl-CoA hydratase/isomerase YP_004435227.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_1369 TetR family transcriptional regulator YP_004435228.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_1368 AMP-dependent synthetase and ligase YP_004435229.1 PFAM: Domain of unknown function DUF1801; KEGG: caa:Caka_0931 domain of unknown function DUF1801 YP_004435230.1 KEGG: pat:Patl_1367 lipoprotein YP_004435231.1 KEGG: pat:Patl_1366 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase YP_004435232.1 PFAM: peptidase M16 domain protein; KEGG: pat:Patl_1365 peptidase M16-like YP_004435233.1 PFAM: Hpt domain protein; KEGG: pat:Patl_1364 Hpt protein YP_004435234.1 manually curated; TIGRFAM: pseudouridine synthase Rlu family protein, TIGR01621; KEGG: pat:Patl_1363 pseudouridine synthase Rlu family protein; PFAM: pseudouridine synthase YP_004435235.1 PFAM: Ketopantoate reductase ApbA/PanE domain protein; manually curated; KEGG: pat:Patl_1362 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase YP_004435236.1 KEGG: pat:Patl_1361 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type YP_004435237.1 manually curated; KEGG: eay:EAM_2776 peptide chain release factor 2 YP_004435238.1 manually curated; KEGG: pat:Patl_1359 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_004435239.1 KEGG: pat:Patl_1358 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein YP_004435240.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pat:Patl_1357 zinc-binding alcohol dehydrogenase YP_004435241.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1356 LysR family transcriptional regulator YP_004435242.1 KEGG: pat:Patl_1355 hypothetical protein YP_004435243.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_1354 short-chain dehydrogenase/reductase SDR YP_004435245.1 KEGG: pat:Patl_1353 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004435246.1 KEGG: pat:Patl_1352 hypothetical protein YP_004435247.1 KEGG: pat:Patl_1351 hypothetical protein YP_004435248.1 KEGG: pat:Patl_1350 XRE family transcriptional regulator YP_004435249.1 KEGG: pat:Patl_1349 ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase YP_004435250.1 KEGG: pat:Patl_1348 hypothetical protein YP_004435251.1 PFAM: aminoglycoside phosphotransferase; KEGG: pat:Patl_1347 aminoglycoside phosphotransferase YP_004435252.1 KEGG: pat:Patl_1346 nicotinamide mononucleotide transporter PnuC; TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC YP_004435253.1 KEGG: pat:Patl_1345 hypothetical protein YP_004435254.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1344 TonB-dependent receptor YP_004435255.1 KEGG: pat:Patl_1343 hypothetical protein YP_004435256.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_1342 thioesterase superfamily protein YP_004435257.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_1341 protein of unknown function DUF699, ATPase YP_004435258.1 KEGG: mdi:METDI1739 hypothetical protein YP_004435259.1 PFAM: protease-associated PA domain protein; peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: cps:CPS_3909 serine protease YP_004435261.1 PFAM: protein of unknown function DUF1555; KEGG: cps:CPS_3910 hypothetical protein YP_004435262.1 KEGG: pat:Patl_1340 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004435263.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_1339 hypothetical protein YP_004435264.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_1338 tetratricopeptide TPR_2 YP_004435265.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; Clp ATPase-like; KEGG: pat:Patl_1337 ATPase AAA-2; SMART: AAA ATPase YP_004435266.1 PFAM: protein of unknown function DUF152; KEGG: pat:Patl_1336 hypothetical protein YP_004435267.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: pat:Patl_1335 RluA family pseudouridine synthase; SMART: RNA-binding S4 domain protein YP_004435268.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: pat:Patl_1334 lipoprotein YP_004435269.1 TIGRFAM: anti-sigma factor, , ChrR family; KEGG: pat:Patl_1333 anti-ECFsigma factor, ChrR YP_004435270.1 KEGG: pat:Patl_1332 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004435271.1 manually curated; PFAM: peptidase S16 lon domain protein; KEGG: pat:Patl_1331 peptidase S16, lon-like; SMART: peptidase S16 lon domain protein YP_004435272.1 PFAM: protein of unknown function DUF1486; KEGG: pat:Patl_1330 hypothetical protein YP_004435273.1 KEGG: pat:Patl_1329 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: short-chain dehydrogenase/reductase SDR YP_004435274.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_1328 hypothetical protein YP_004435275.1 PFAM: protein of unknown function DUF1365; KEGG: pat:Patl_1327 hypothetical protein YP_004435276.1 KEGG: pat:Patl_1326 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase YP_004435277.1 KEGG: pat:Patl_1325 hypothetical protein YP_004435278.1 KEGG: pat:Patl_1324 lipoprotein YP_004435279.1 PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_1323 flagellar motor protein MotB YP_004435280.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_1322 flagellar motor protein PomA YP_004435281.1 KEGG: pat:Patl_1321 exodeoxyribonuclease VII, small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit YP_004435282.1 PFAM: Polyprenyl synthetase; KEGG: pat:Patl_1320 polyprenyl synthetase YP_004435283.1 KEGG: pat:Patl_1319 deoxyxylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein YP_004435284.1 PFAM: protein of unknown function DUF188; KEGG: pat:Patl_1318 hypothetical protein YP_004435285.1 KEGG: pat:Patl_1317 phosphatidylglycerophosphatase; PFAM: phosphatidylglycerophosphatase A YP_004435286.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: pat:Patl_1316 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_004435287.1 KEGG: pat:Patl_1315 transcription antitermination protein NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44 YP_004435288.1 KEGG: pat:Patl_1314 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_004435289.1 KEGG: pat:Patl_1313 GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_004435290.1 TIGRFAM: riboflavin synthase, alpha subunit; KEGG: pat:Patl_1312 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein YP_004435291.1 KEGG: pat:Patl_1311 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_004435292.1 PFAM: ATP-cone domain protein; KEGG: pat:Patl_1310 transcriptional regulator NrdR YP_004435293.1 PFAM: Sporulation domain-containing protein; KEGG: spl:Spea_0614 sporulation domain-containing protein YP_004435294.1 PFAM: Sporulation domain-containing protein; KEGG: spl:Spea_0613 hypothetical protein YP_004435295.1 KEGG: spl:Spea_0612 hypothetical protein YP_004435296.1 KEGG: spl:Spea_0611 hypothetical protein YP_004435297.1 KEGG: spl:Spea_0610 hypothetical protein YP_004435298.1 KEGG: amc:MADE_01190 hypothetical protein YP_004435299.1 KEGG: pat:Patl_1308 hypothetical protein YP_004435300.1 KEGG: amc:MADE_01188 hypothetical protein YP_004435301.1 KEGG: pat:Patl_1299 serine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase YP_004435302.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pat:Patl_1298 oxidoreductase-like YP_004435303.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pat:Patl_1297 peptidase M20 YP_004435304.1 KEGG: pat:Patl_1296 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_004435305.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; GAF domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: pat:Patl_1295 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver YP_004435306.1 KEGG: pat:Patl_1294 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004435307.1 KEGG: pat:Patl_1293 cytochrome c oxidase subunit IV; TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV YP_004435308.1 KEGG: pat:Patl_1292 cytochrome c oxidase, subunit III; TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III YP_004435309.1 KEGG: pat:Patl_1291 cytochrome-c oxidase; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_004435310.1 KEGG: pat:Patl_1290 ubiquinol oxidase, subunit II; TIGRFAM: ubiquinol oxidase, subunit II; PFAM: COX aromatic rich domain protein; cytochrome c oxidase subunit II YP_004435311.1 KEGG: pat:Patl_1289 hypothetical protein YP_004435312.1 PFAM: amidohydrolase; KEGG: gau:GAU_1079 hypothetical protein YP_004435313.1 TIGRFAM: amidohydrolase; KEGG: pha:PSHAa2416 hydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_004435314.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_1288 TetR family transcriptional regulator YP_004435315.1 KEGG: pat:Patl_1287 transporter YP_004435316.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pat:Patl_1286 glutathione-dependent formaldehyde-activating, GFA YP_004435317.1 KEGG: pat:Patl_1285 hypothetical protein YP_004435318.1 KEGG: pat:Patl_1284 aconitate hydratase 1; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain-containing protein YP_004435319.1 PFAM: Entericidin EcnAB; KEGG: ilo:IL0890 hypothetical protein YP_004435320.1 KEGG: pjd:Pjdr2_1588 pathogenesis-related transcriptional factor and ERF protein YP_004435321.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_1283 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004435322.1 KEGG: pat:Patl_1282 hypothetical protein YP_004435323.1 KEGG: pat:Patl_1281 hypothetical protein YP_004435324.1 KEGG: pat:Patl_1280 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase YP_004435325.1 PFAM: type IV pilus assembly PilZ; KEGG: pat:Patl_1279 type IV pilus assembly PilZ YP_004435326.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: pat:Patl_1278 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004435327.1 PFAM: Uncharacterised protein family UPF0066; KEGG: pat:Patl_1277 hypothetical protein YP_004435328.1 KEGG: pat:Patl_1276 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein YP_004435329.1 KEGG: pat:Patl_1275 beta-lactamase-like YP_004435330.1 PFAM: Patatin; KEGG: pat:Patl_1274 patatin YP_004435331.1 KEGG: maq:Maqu_1907 hypothetical protein YP_004435332.1 PFAM: protein of unknown function DUF1456; KEGG: pat:Patl_1273 hypothetical protein YP_004435333.1 KEGG: pat:Patl_1271 propionyl-CoA carboxylase; PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein YP_004435334.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; KEGG: pat:Patl_1270 sodium/hydrogen exchanger YP_004435335.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_1269 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004435336.1 KEGG: pat:Patl_1268 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; Tetratricopeptide repeat YP_004435337.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: amc:MADE_02796 transcriptional regulator, LysR family protein YP_004435338.1 PFAM: lipase class 3; KEGG: pat:Patl_1267 lipase, class 3 YP_004435339.1 KEGG: pat:Patl_1266 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase YP_004435340.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; KEGG: pat:Patl_1265 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region YP_004435341.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: pat:Patl_1264 DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type YP_004435342.1 KEGG: pat:Patl_1263 ribonuclease H; PFAM: ribonuclease HII/HIII YP_004435343.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: pat:Patl_1262 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_004435344.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: pat:Patl_1261 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_004435345.1 KEGG: pat:Patl_1260 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_004435346.1 KEGG: pat:Patl_1259 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein YP_004435347.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pat:Patl_1258 outer membrane chaperone Skp (OmpH) YP_004435348.1 KEGG: pat:Patl_1257 surface antigen (D15); TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein YP_004435349.1 KEGG: pat:Patl_1256 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein YP_004435350.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: pat:Patl_1255 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein YP_004435351.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pat:Patl_1254 phosphatidate cytidylyltransferase YP_004435352.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: pat:Patl_1253 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_004435353.1 KEGG: pat:Patl_1252 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor YP_004435354.1 KEGG: pat:Patl_1251 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004435355.1 KEGG: pat:Patl_1250 elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein YP_004435356.1 KEGG: pat:Patl_1249 ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2 YP_004435358.1 KEGG: pat:Patl_1248 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24 YP_004435359.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: pat:Patl_1247 UTP-GlnB uridylyltransferase, GlnD; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein YP_004435360.1 PFAM: metallophosphoesterase; KEGG: pat:Patl_1246 metallophosphoesterase YP_004435361.1 KEGG: pat:Patl_1245 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004435362.1 PFAM: YebG family protein; KEGG: pat:Patl_1244 hypothetical protein YP_004435363.1 KEGG: pat:Patl_1243 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin YP_004435364.1 KEGG: pat:Patl_1242 Fe-S protein assembly chaperone HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70 YP_004435365.1 TIGRFAM: co-chaperone Hsc20; PFAM: HSC20 oligomerisation; heat shock protein DnaJ domain protein; KEGG: pat:Patl_1241 co-chaperone HscB; SMART: heat shock protein DnaJ domain protein YP_004435366.1 KEGG: pat:Patl_1240 iron-sulfur cluster assembly protein IscA; TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein YP_004435367.1 KEGG: pat:Patl_1239 scaffold protein; TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein YP_004435368.1 TIGRFAM: cysteine desulfurase IscS; KEGG: pat:Patl_1238 cysteine desulfurase IscS; PFAM: aminotransferase class V YP_004435369.1 KEGG: pat:Patl_1237 BadM/Rrf2 family transcriptional regulator; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 YP_004435370.1 TIGRFAM: serine O-acetyltransferase; KEGG: pat:Patl_1236 serine O-acetyltransferase YP_004435371.1 KEGG: pat:Patl_1235 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_004435372.1 KEGG: sdn:Sden_2260 lipoprotein YP_004435373.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pat:Patl_1233 glyoxalase/bleomycin resistance protein/dioxygenase YP_004435374.1 PFAM: inositol monophosphatase; KEGG: pat:Patl_1232 inositol-1(or 4)-monophosphatase YP_004435375.1 KEGG: pat:Patl_1231 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004435376.1 KEGG: pat:Patl_1230 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004435377.1 KEGG: pat:Patl_1229 preprotein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein YP_004435378.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: pat:Patl_1228 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_004435379.1 KEGG: pat:Patl_1227 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004435380.1 KEGG: pat:Patl_1226 hypothetical protein YP_004435381.1 PFAM: Protein of unknown function DUF2170; KEGG: pat:Patl_1225 hypothetical protein YP_004435382.1 PFAM: PspA/IM30 family protein; KEGG: pat:Patl_1224 phage shock protein A, PspA YP_004435383.1 PFAM: Ion transport 2 domain protein; KEGG: pat:Patl_1223 ion transport 2 YP_004435384.1 PFAM: Protein of unknown function DUF2491; KEGG: pat:Patl_1222 hypothetical protein YP_004435385.1 PFAM: protein of unknown function DUF350; KEGG: pat:Patl_1221 hypothetical protein YP_004435386.1 PFAM: protein of unknown function DUF1190; KEGG: pat:Patl_1220 hypothetical protein YP_004435387.1 PFAM: glutathionylspermidine synthase; KEGG: pat:Patl_1219 glutathionylspermidine synthase YP_004435388.1 PFAM: Rhomboid family protein; KEGG: pat:Patl_1218 rhomboid-like protein YP_004435389.1 KEGG: pat:Patl_1217 hypothetical protein YP_004435390.1 KEGG: pat:Patl_1216 alkaline phosphatase; PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase YP_004435391.1 PFAM: isocitrate lyase and phosphorylmutase; KEGG: pat:Patl_1215 isocitrate lyase YP_004435392.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_1214 LysR family transcriptional regulator YP_004435393.1 TIGRFAM: malate synthase G; KEGG: pat:Patl_1213 malate synthase G; PFAM: Malate synthase family protein YP_004435394.1 KEGG: pat:Patl_1212 hypothetical protein YP_004435395.1 KEGG: pat:Patl_1211 HPr kinase YP_004435396.1 KEGG: pat:Patl_1210 hypothetical protein YP_004435397.1 KEGG: pat:Patl_1209 hypothetical protein YP_004435398.1 KEGG: pat:Patl_1208 peptidase S1 and S6, chymotrypsin/Hap YP_004435399.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: amc:MADE_01321 capsular polysaccharide biosynthesis protein I YP_004435400.1 PFAM: protein of unknown function DUF218; KEGG: pat:Patl_1206 hypothetical protein YP_004435401.1 PFAM: Patatin; KEGG: pat:Patl_1205 patatin YP_004435402.1 KEGG: pat:Patl_1204 hypothetical protein YP_004435403.1 PFAM: FAD linked oxidase domain protein; KEGG: pat:Patl_1202 4-cresol dehydrogenase (hydroxylating) YP_004435404.1 TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_1201 tetratricopeptide TPR_2; SMART: Tetratricopeptide repeat; RNA-processing protein HAT helix repeating-containing protein YP_004435405.1 KEGG: pat:Patl_1200 hypothetical protein YP_004435406.1 KEGG: pat:Patl_1199 hypothetical protein YP_004435407.1 PFAM: glycosyl transferase family 2; KEGG: pat:Patl_1198 glycosyl transferase family protein YP_004435408.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1197 glycosyl transferase, group 1 YP_004435409.1 KEGG: pat:Patl_1196 hypothetical protein YP_004435410.1 KEGG: pat:Patl_1195 hypothetical protein YP_004435411.1 KEGG: pat:Patl_1194 asparagine synthase (glutamine-hydrolyzing); TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004435412.1 PFAM: acyltransferase 3; KEGG: fps:FP0761 acyltransferase YP_004435413.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1193 glycosyl transferase, group 1 YP_004435414.1 KEGG: ara:Arad_9566 ketal pyruvate transferase protein YP_004435415.1 PFAM: glycosyl transferase family 2; KEGG: mtp:Mthe_0961 glycosyl transferase family protein YP_004435416.1 KEGG: eba:ebA5327 hypothetical protein YP_004435417.1 KEGG: msm:MSMEG_4735 hypothetical protein YP_004435418.1 KEGG: plm:Plim_1057 hypothetical protein YP_004435419.1 PFAM: polysaccharide biosynthesis protein; KEGG: pat:Patl_1190 polysaccharide biosynthesis protein YP_004435420.1 PFAM: glycosyl transferase group 1; KEGG: amc:MADE_01300 hypothetical protein YP_004435421.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pat:Patl_1177 hypothetical protein YP_004435422.1 KEGG: pat:Patl_1178 glycosyl transferase, group 1; TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1 YP_004435423.1 KEGG: amc:MADE_01294 hypothetical protein YP_004435424.1 PFAM: O-antigen polymerase; KEGG: amc:MADE_01295 secreted polysaccharide polymerase YP_004435425.1 KEGG: pat:Patl_1176 hypothetical protein YP_004435426.1 KEGG: pat:Patl_1173 eight transmembrane protein EpsH; TIGRFAM: eight transmembrane protein EpsH; EpsI family protein; PFAM: Exosortase EpsH-related YP_004435427.1 KEGG: pat:Patl_1172 polysaccharide deacetylase; TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase YP_004435428.1 KEGG: pat:Patl_1171 sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_004435429.1 PFAM: polysaccharide export protein; KEGG: pat:Patl_1170 polysaccharide export protein YP_004435430.1 KEGG: pat:Patl_1169 lipopolysaccharide biosynthesis; TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein YP_004435431.1 TIGRFAM: capsular exopolysaccharide family; KEGG: pat:Patl_1168 protein-tyrosine kinase YP_004435432.1 KEGG: pat:Patl_1167 hypothetical protein YP_004435433.1 KEGG: pat:Patl_1166 potassium efflux system protein; TIGRFAM: potassium efflux system protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein YP_004435434.1 KEGG: pat:Patl_1165 hypothetical protein YP_004435435.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pat:Patl_1164 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_004435436.1 KEGG: pat:Patl_1163 hypothetical protein YP_004435437.1 KEGG: pat:Patl_1162 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily YP_004435438.1 PFAM: protein of unknown function DUF480; KEGG: pat:Patl_1161 hypothetical protein YP_004435439.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rba:RB9493 acetyltransferase YP_004435440.1 SMART: Helix-turn-helix, AraC domain; KEGG: swp:swp_2556 transcriptional regulator, AraC family YP_004435441.1 KEGG: pat:Patl_1948 hypothetical protein YP_004435442.1 PFAM: Xylose isomerase domain-containing protein TIM barrel; KEGG: pat:Patl_1158 xylose isomerase-like TIM barrel YP_004435443.1 PFAM: FAD dependent oxidoreductase; glucose-methanol-choline oxidoreductase; KEGG: swp:swp_4566 choline dehydrogenase and flavoproteins-like protein YP_004435444.1 KEGG: swp:swp_4565 hypothetical protein YP_004435445.1 KEGG: pat:Patl_1157 AraC family transcriptional regulator; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004435446.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: pat:Patl_1156 D-3-phosphoglycerate dehydrogenase YP_004435447.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_1155 redoxin YP_004435448.1 KEGG: pat:Patl_1154 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold YP_004435449.1 PFAM: protein of unknown function DUF179; KEGG: pat:Patl_1153 hypothetical protein YP_004435450.1 TIGRFAM: glutathione synthetase; KEGG: pat:Patl_1152 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein YP_004435452.1 KEGG: pat:Patl_1151 response regulator receiver protein; PFAM: response regulator receiver; LytTr DNA-binding region; SMART: response regulator receiver YP_004435453.1 PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: pat:Patl_1150 signal transduction histidine kinase, LytS YP_004435454.1 KEGG: pat:Patl_1149 response regulator receiver protein; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver YP_004435455.1 PFAM: TonB-dependent receptor plug; KEGG: pat:Patl_1148 TonB-dependent receptor, plug YP_004435457.1 KEGG: pat:Patl_1147 hypothetical protein YP_004435458.1 KEGG: pat:Patl_1146 hypothetical protein YP_004435459.1 KEGG: pat:Patl_1145 hypothetical protein YP_004435461.1 PFAM: Stress responsive alpha-beta barrel domain-containing protein; KEGG: pat:Patl_1144 stress responsive alpha-beta barrel YP_004435462.1 PFAM: pentapeptide repeat protein; KEGG: mmw:Mmwyl1_0563 pentapeptide repeat-containing protein YP_004435463.1 PFAM: protein of unknown function DUF305; KEGG: sde:Sde_1942 hypothetical protein YP_004435464.1 PFAM: glutaredoxin; KEGG: amc:MADE_00406 hypothetical protein YP_004435465.1 PFAM: diacylglycerol kinase; KEGG: amc:MADE_00377 diacylglycerol kinase (DAGK) YP_004435466.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: cps:CPS_2717 sulfatase YP_004435467.1 PFAM: glycosyl transferase family 39; KEGG: amc:MADE_00382 glycosyl transferase, family 39 YP_004435468.1 PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_00383 hypothetical protein YP_004435469.1 PFAM: glycosyl transferase family 2; KEGG: amc:MADE_00384 glycosyl transferase, group 2 family protein YP_004435470.1 KEGG: amc:MADE_00385 transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004435471.1 KEGG: amc:MADE_00386 sensor transduction kinase (copper resistance); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004435472.1 KEGG: pat:Patl_1143 PepSY-associated TM helix; manually curated; PFAM: Propeptide PepSY amd peptidase M4 YP_004435473.1 KEGG: pat:Patl_1142 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435474.1 KEGG: pat:Patl_1141 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004435475.1 KEGG: pat:Patl_1140 transport system permease protein; manually curated; PFAM: transport system permease protein YP_004435476.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: pat:Patl_1139 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_004435477.1 KEGG: pat:Patl_1138 cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS YP_004435478.1 KEGG: pat:Patl_1137 cobalbumin biosynthesis enzyme; PFAM: cobalbumin biosynthesis protein YP_004435479.1 PFAM: Phosphoglycerate mutase; KEGG: pat:Patl_1136 phosphoglycerate mutase YP_004435480.1 KEGG: pat:Patl_1135 cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase YP_004435481.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: pat:Patl_1134 cob(I)yrinic acid a,c-diamide adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_004435482.1 PFAM: periplasmic binding protein; KEGG: pat:Patl_1133 periplasmic binding protein YP_004435483.1 PFAM: Phosphoglycerate mutase; KEGG: pat:Patl_1132 phosphoglycerate mutase YP_004435484.1 manually curated; TIGRFAM: cobalamin biosynthesis protein CobD; KEGG: pat:Patl_1131 cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB YP_004435485.1 KEGG: pat:Patl_1130 aminotransferase, class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II YP_004435486.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_1129 LysR family transcriptional regulator YP_004435487.1 KEGG: pat:Patl_1128 glutathione S-transferase-like; manually curated; PFAM: Glutathione S-transferase domain YP_004435488.1 PFAM: Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: pat:Patl_1127 oxidoreductase FAD-binding region YP_004435489.1 PFAM: protein of unknown function DUF1348; KEGG: pat:Patl_1126 hypothetical protein YP_004435490.1 KEGG: sde:Sde_1121 hypothetical protein YP_004435491.1 PFAM: N-acylglucosamine 2-epimerase; KEGG: cja:CJA_0243 Unk2 YP_004435492.1 PFAM: glycosidase related protein; KEGG: sde:Sde_0507 hypothetical protein YP_004435493.1 PFAM: Na+/solute symporter; KEGG: cja:CJA_0241 Na+/glucose symporter YP_004435494.1 KEGG: sde:Sde_0506 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004435495.1 KEGG: cja:CJA_3307 mannose-6-phosphate isomerase-like protein; PFAM: N-acylglucosamine 2-epimerase YP_004435496.1 PFAM: sulfatase; KEGG: rba:RB12092 N-acetylgalactosamine 6-sulfate sulfatase (GALNS) YP_004435497.1 PFAM: NUDIX hydrolase; KEGG: ppr:PBPRA1244 hypothetical protein YP_004435498.1 KEGG: ttu:TERTU_4092 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435499.1 KEGG: ttu:TERTU_4094 glycoside hydrolase family 26 domain protein YP_004435500.1 KEGG: wpi:WPa_0489 hypothetical protein YP_004435501.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_1110 TonB-dependent receptor YP_004435502.1 PFAM: carbon starvation protein CstA; KEGG: pat:Patl_1109 cold-shock regulated carbon starvation protein A YP_004435503.1 PFAM: Ankyrin; KEGG: pat:Patl_1108 ankyrin YP_004435504.1 KEGG: pat:Patl_1107 catalase; PFAM: Catalase related subgroup; Catalase domain protein YP_004435505.1 KEGG: pat:Patl_1106 phosphodiesterase I; PFAM: type I phosphodiesterase/nucleotide pyrophosphatase YP_004435506.1 KEGG: pat:Patl_1105 hypothetical protein YP_004435507.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; KEGG: pat:Patl_1104 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB YP_004435508.1 KEGG: pat:Patl_1103 hypothetical protein YP_004435509.1 KEGG: pat:Patl_1102 hypothetical protein YP_004435510.1 PFAM: protein of unknown function DUF1555; KEGG: cpi:Cpin_4289 glycoside hydrolase family 5 YP_004435511.1 PFAM: acyltransferase 3; KEGG: pat:Patl_1096 acyltransferase 3 YP_004435512.1 KEGG: pat:Patl_1094 GumL YP_004435513.1 KEGG: pat:Patl_1097 hypothetical protein YP_004435514.1 PFAM: acyltransferase 3; KEGG: pat:Patl_1093 acyltransferase 3 YP_004435515.1 KEGG: pat:Patl_1098 hypothetical protein YP_004435516.1 PFAM: glycosyl transferase family 2; KEGG: pat:Patl_1092 glycosyl transferase family protein YP_004435517.1 KEGG: pat:Patl_1091 exopolysaccharide production protein YP_004435518.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1090 glycosyl transferase, group 1 YP_004435519.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1089 glycosyl transferase, group 1 YP_004435520.1 KEGG: pat:Patl_1088 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_004435521.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pat:Patl_1087 NAD-dependent epimerase/dehydratase YP_004435522.1 KEGG: pat:Patl_1086 hypothetical protein YP_004435523.1 PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1085 glycosyl transferase, group 1 YP_004435524.1 PFAM: acyltransferase 3; KEGG: pat:Patl_1084 acyltransferase 3 YP_004435525.1 PFAM: polysaccharide biosynthesis protein; KEGG: pat:Patl_1083 polysaccharide biosynthesis protein YP_004435526.1 KEGG: pat:Patl_1094 GumL YP_004435527.1 KEGG: pat:Patl_1082 hypothetical protein YP_004435528.1 KEGG: pat:Patl_1081 hypothetical protein YP_004435529.1 KEGG: pat:Patl_1080 periplasmic protein YP_004435530.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_1079 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004435531.1 KEGG: pat:Patl_1078 hypothetical protein YP_004435532.1 KEGG: pat:Patl_1077 O-antigen polymerase; manually curated; PFAM: O-antigen polymerase YP_004435533.1 KEGG: pat:Patl_1076 hypothetical protein YP_004435534.1 KEGG: pat:Patl_1075 hypothetical protein YP_004435535.1 manually curated; KEGG: pat:Patl_1074 PHP-like; PFAM: PHP domain protein YP_004435536.1 TIGRFAM: capsular exopolysaccharide family; KEGG: pat:Patl_1073 protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein YP_004435537.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pat:Patl_1072 polysaccharide export protein YP_004435538.1 KEGG: pat:Patl_1071 hypothetical protein YP_004435539.1 TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: pat:Patl_1070 sugar transferase; PFAM: sugar transferase YP_004435540.1 PFAM: glycoside hydrolase family 8; KEGG: pat:Patl_1069 glycoside hydrolase family protein YP_004435541.1 KEGG: pat:Patl_1069 glycoside hydrolase family protein YP_004435542.1 KEGG: pat:Patl_1068 hypothetical protein YP_004435543.1 KEGG: pat:Patl_1067 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004435544.1 TIGRFAM: peroxiredoxin; KEGG: pat:Patl_1066 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like YP_004435545.1 PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_1065 tetratricopeptide TPR_2 YP_004435546.1 KEGG: pat:Patl_1064 TonB family protein; TIGRFAM: TonB family protein; PFAM: TonB domain YP_004435547.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pat:Patl_1063 biopolymer transport protein ExbD/TolR YP_004435548.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_1062 MotA/TolQ/ExbB proton channel YP_004435549.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_1061 MotA/TolQ/ExbB proton channel YP_004435550.1 KEGG: pat:Patl_1060 hypothetical protein YP_004435551.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1059 TonB-dependent receptor YP_004435552.1 PFAM: iron permease FTR1; KEGG: pat:Patl_1058 iron permease FTR1 YP_004435553.1 PFAM: lipase class 2; KEGG: pat:Patl_1057 lipase, class 2 YP_004435554.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_1056 TonB-dependent receptor YP_004435555.1 KEGG: pat:Patl_1055 hypothetical protein YP_004435556.1 TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: pat:Patl_1054 histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004435557.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: pat:Patl_1053 two component transcriptional regulator; SMART: response regulator receiver; transcriptional regulator domain-containing protein YP_004435558.1 KEGG: pat:Patl_1052 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein YP_004435559.1 PFAM: exonuclease RdgC; KEGG: pat:Patl_1051 recombination associated protein YP_004435560.1 PFAM: Metal-dependent hydrolase HDOD; KEGG: pat:Patl_1050 signal transduction protein YP_004435561.1 KEGG: pat:Patl_1049 hypothetical protein YP_004435562.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pat:Patl_1048 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein YP_004435563.1 PFAM: histidine triad (HIT) protein; KEGG: pat:Patl_1047 histidine triad (HIT) protein YP_004435564.1 KEGG: pat:Patl_1046 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_004435565.1 KEGG: pat:Patl_1045 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_004435566.1 KEGG: pat:Patl_1044 dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase YP_004435567.1 KEGG: pat:Patl_1043 hypothetical protein; manually curated; PFAM: protein of unknown function DUF205 YP_004435568.1 TIGRFAM: metalloendopeptidase, glycoprotease family; KEGG: pat:Patl_1042 DNA-binding/iron metalloprotein/AP endonuclease; PFAM: peptidase M22 glycoprotease YP_004435569.1 KEGG: pat:Patl_1041 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21 YP_004435570.1 manually curated; KEGG: pat:Patl_1040 hypothetical protein YP_004435571.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; DNA primase, DnaB-helicase binding domain; DNA primase DnaG DnaB-binding; KEGG: pat:Patl_1039 DNA primase; SMART: Toprim sub domain-containing protein; DNA primase DnaG DnaB-binding YP_004435572.1 KEGG: pat:Patl_1038 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 non-essential domain protein; sigma-70 1.1 domain protein; sigma-70 region 1.2; sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein YP_004435573.1 PFAM: acriflavin resistance protein; KEGG: pat:Patl_1037 acriflavin resistance protein YP_004435574.1 KEGG: pat:Patl_1036 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004435576.1 PFAM: Endonuclease I; Endonuclease/exonuclease/phosphatase; KEGG: pat:Patl_1033 endonuclease I YP_004435577.1 KEGG: pat:Patl_1032 hypothetical protein YP_004435578.1 PFAM: protein of unknown function DUF1260; KEGG: pat:Patl_1031 hypothetical protein YP_004435579.1 SMART: phospholipid/glycerol acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; KEGG: pat:Patl_1030 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase YP_004435580.1 KEGG: pat:Patl_1029 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: Hpt domain protein YP_004435581.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: pat:Patl_1028 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: response regulator receiver; AAA ATPase YP_004435582.1 KEGG: pat:Patl_1027 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein YP_004435583.1 KEGG: pat:Patl_1026 hypothetical protein YP_004435584.1 KEGG: pat:Patl_1025 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp YP_004435585.1 KEGG: pat:Patl_1024 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein YP_004435586.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: pat:Patl_1023 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_004435587.1 TIGRFAM: histidine ammonia-lyase; KEGG: pat:Patl_1022 histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_004435588.1 TIGRFAM: urocanate hydratase; KEGG: pat:Patl_1021 urocanate hydratase; PFAM: Urocanase YP_004435589.1 TIGRFAM: histidine utilization repressor; PFAM: UbiC transcription regulator-associated domain-containing protein; regulatory protein GntR HTH; KEGG: pat:Patl_1020 histidine utilization repressor; SMART: regulatory protein GntR HTH YP_004435590.1 TIGRFAM: imidazolonepropionase; KEGG: pat:Patl_1019 imidazolonepropionase; PFAM: amidohydrolase YP_004435591.1 KEGG: pat:Patl_1018 formiminoglutamase; TIGRFAM: formiminoglutamase; PFAM: Arginase/agmatinase/formiminoglutamase YP_004435592.1 PFAM: nitroreductase; KEGG: pat:Patl_1017 nitroreductase YP_004435593.1 KEGG: saz:Sama_2007 hypothetical protein YP_004435594.1 KEGG: pat:Patl_1016 hypothetical protein YP_004435595.1 KEGG: pat:Patl_1015 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17 YP_004435596.1 TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: pat:Patl_1014 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type YP_004435597.1 TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: pat:Patl_1013 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_004435598.1 KEGG: pat:Patl_1012 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11 YP_004435599.1 KEGG: pat:Patl_1011 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13 YP_004435600.1 manually curated; TIGRFAM: ribosomal protein L36; KEGG: pat:Patl_1010 50S ribosomal protein L36; PFAM: ribosomal protein L36 YP_004435601.1 KEGG: pat:Patl_1009 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein YP_004435602.1 TIGRFAM: ribosomal protein L15; KEGG: pat:Patl_1008 50S ribosomal protein L15 YP_004435603.1 KEGG: pat:Patl_1007 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30 YP_004435604.1 KEGG: pat:Patl_1006 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5 YP_004435605.1 KEGG: pat:Patl_1005 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E YP_004435606.1 KEGG: pat:Patl_1004 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain YP_004435607.1 PFAM: ribosomal protein S8; KEGG: pat:Patl_1003 30S ribosomal protein S8 YP_004435608.1 PFAM: ribosomal protein S14; KEGG: pat:Patl_1002 ribosomal protein S14 YP_004435609.1 KEGG: pat:Patl_1001 50S ribosomal protein L5 YP_004435610.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: pat:Patl_1000 50S ribosomal protein L24; SMART: KOW domain protein YP_004435611.1 KEGG: pat:Patl_0999 ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e YP_004435612.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0998 AMP-dependent synthetase and ligase YP_004435613.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_0997 LysR family transcriptional regulator YP_004435614.1 KEGG: pat:Patl_0996 hypothetical protein YP_004435615.1 KEGG: pat:Patl_0995 23S rRNA (guanosine-2'-O-)-methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding YP_004435616.1 TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; KEGG: pat:Patl_0994 ribonuclease R; SMART: Cold shock protein YP_004435617.1 KEGG: pat:Patl_0993 Sel1 repeat-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein YP_004435618.1 KEGG: pat:Patl_0992 hypothetical protein YP_004435619.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pat:Patl_0991 FMN reductase YP_004435620.1 KEGG: pat:Patl_0990 RNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU) YP_004435621.1 KEGG: pat:Patl_0989 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold YP_004435622.1 KEGG: pat:Patl_0988 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004435623.1 KEGG: pat:Patl_0987 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004435624.1 KEGG: pat:Patl_0986 hypothetical protein YP_004435625.1 TIGRFAM: methylglyoxal synthase; KEGG: pat:Patl_0985 methylglyoxal synthase; PFAM: MGS domain protein YP_004435626.1 PFAM: Kelch repeat type 1-containing protein; KEGG: pat:Patl_0984 kelch repeat-containing protein YP_004435627.1 KEGG: pat:Patl_0983 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein YP_004435628.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: pat:Patl_0982 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_004435629.1 TIGRFAM: acetylglutamate kinase; KEGG: pat:Patl_0981 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_004435630.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: pat:Patl_0980 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_004435631.1 TIGRFAM: argininosuccinate synthase; KEGG: pat:Patl_0979 argininosuccinate synthase; PFAM: argininosuccinate synthase YP_004435632.1 KEGG: pat:Patl_0978 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase YP_004435633.1 KEGG: pat:Patl_0977 N-acetylglutamate synthase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase YP_004435634.1 PFAM: HopJ type III effector protein; KEGG: pat:Patl_0976 hypothetical protein YP_004435635.1 KEGG: pat:Patl_0975 hypothetical protein YP_004435636.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; KEGG: pat:Patl_0974 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG and KHG aldolase YP_004435637.1 TIGRFAM: glucokinase; KEGG: pat:Patl_0973 glucokinase; PFAM: Glucokinase YP_004435638.1 TIGRFAM: 6-phosphogluconate dehydratase; KEGG: pat:Patl_0972 phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004435639.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: pat:Patl_0971 6-phosphogluconolactonase YP_004435640.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; KEGG: pat:Patl_0970 glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase YP_004435641.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_0969 DNA-binding transcriptional regulator HexR YP_004435642.1 TIGRFAM: pyruvate kinase; KEGG: pat:Patl_0968 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta YP_004435643.1 KEGG: sdn:Sden_0914 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein YP_004435644.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0967 TonB-dependent receptor YP_004435645.1 PFAM: Saccharopine dehydrogenase; KEGG: pat:Patl_0966 saccharopine dehydrogenase YP_004435646.1 KEGG: pat:Patl_0965 signal transduction protein; PFAM: EF-Hand, Calmodulin; SMART: Calcium-binding EF-hand-containing protein YP_004435647.1 KEGG: pat:Patl_0964 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_004435648.1 KEGG: pat:Patl_0963 hypothetical protein YP_004435649.1 TIGRFAM: RNA polymerase sigma factor; RNA polymerase sigma factor, sigma-70 family; KEGG: pat:Patl_0962 ECF subfamily RNA polymerase sigma-24 factor YP_004435650.1 KEGG: pat:Patl_0961 TPR repeat-containing serine/threonin protein kinase; PFAM: Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat YP_004435651.1 KEGG: pat:Patl_0960 hypothetical protein YP_004435652.1 KEGG: pat:Patl_0959 hypothetical protein YP_004435653.1 KEGG: pat:Patl_0958 hypothetical protein YP_004435654.1 KEGG: pat:Patl_0957 hypothetical protein YP_004435655.1 PFAM: glutamine amidotransferase class-II; KEGG: pat:Patl_0956 glutamine amidotransferase, class-II YP_004435656.1 KEGG: pat:Patl_0955 hypothetical protein YP_004435657.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pat:Patl_0954 peptidoglycan binding domain-containing protein YP_004435658.1 PFAM: protein of unknown function DUF1555; KEGG: pat:Patl_0953 hypothetical protein YP_004435659.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0952 3-ketoacyl-(acyl-carrier-protein) reductase YP_004435660.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: pat:Patl_0951 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding YP_004435661.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_0950 enoyl-CoA hydratase/isomerase YP_004435662.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0949 acyl-CoA dehydrogenase-like YP_004435663.1 KEGG: pat:Patl_0948 methylmalonate-semialdehyde dehydrogenase; TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase YP_004435664.1 KEGG: pat:Patl_0947 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004435665.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: pat:Patl_0942 hypothetical protein YP_004435666.1 KEGG: pat:Patl_0941 peptidase M19, renal dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_004435667.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0940 TonB-dependent receptor YP_004435668.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0939 TonB-dependent receptor YP_004435669.1 KEGG: pat:Patl_0938 hypothetical protein YP_004435670.1 KEGG: pto:PTO1433 precorrin-2 C20-methyltransferase YP_004435671.1 KEGG: pat:Patl_0927 cell division topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE YP_004435672.1 TIGRFAM: septum site-determining protein MinD; KEGG: pat:Patl_0926 septum site-determining protein MinD YP_004435673.1 manually curated; TIGRFAM: septum site-determining protein MinC; KEGG: pat:Patl_0925 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC YP_004435674.1 KEGG: pat:Patl_0923 hypothetical protein YP_004435675.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pat:Patl_0922 2-nitropropane dioxygenase, NPD YP_004435676.1 KEGG: pat:Patl_1448 maleylacetoacetate isomerase; TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain YP_004435677.1 TIGRFAM: fumarylacetoacetase; KEGG: pha:PSHAa2169 fumarylacetoacetase (fumarylacetoacetate hydrolase) (beta-diketonase)(FAA); PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase YP_004435678.1 TIGRFAM: homogentisate 1,2-dioxygenase; KEGG: pha:PSHAb0338 homogentisate 1,2-dioxygenase; PFAM: homogentisate 12-dioxygenase YP_004435679.1 PFAM: Na+/solute symporter; KEGG: nam:NAMH_1015 acetate permease YP_004435680.1 PFAM: protein of unknown function DUF485; KEGG: pag:PLES_18321 hypothetical protein YP_004435681.1 PFAM: sulfatase; KEGG: mpt:Mpe_A2680 arylsulfatase YP_004435682.1 PFAM: sulfatase; KEGG: tmz:Tmz1t_3870 sulfatase YP_004435683.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_2319 TonB-dependent receptor YP_004435684.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: enc:ECL_02254 transcriptional regulator AbgR YP_004435685.1 PFAM: protein of unknown function DUF81; KEGG: mes:Meso_3601 hypothetical protein YP_004435686.1 KEGG: pat:Patl_0921 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; PFAM: Methionine synthase vitamin-B12 independent YP_004435687.1 PFAM: Domain of unknown function DUF1852; KEGG: pat:Patl_0920 hypothetical protein YP_004435688.1 KEGG: pat:Patl_0913 hypothetical protein YP_004435689.1 PFAM: protein of unknown function UPF0118; KEGG: pat:Patl_0915 hypothetical protein YP_004435690.1 PFAM: KDPG and KHG aldolase; KEGG: pat:Patl_0899 KDPG and KHG aldolase YP_004435691.1 PFAM: glycoside hydrolase family 16; KEGG: pat:Patl_0843 glycoside hydrolase family protein YP_004435692.1 PFAM: Ig domain protein group 2 domain protein; KEGG: pat:Patl_0839 Ig-like, group 2; SMART: Ig domain protein group 2 domain protein YP_004435693.1 KEGG: pat:Patl_0838 hypothetical protein YP_004435694.1 PFAM: PfkB domain protein; KEGG: pat:Patl_0836 PfkB YP_004435695.1 KEGG: pat:Patl_0835 SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004435696.1 PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: pat:Patl_0834 mannitol dehydrogenase-like YP_004435697.1 KEGG: pat:Patl_0833 hypothetical protein YP_004435698.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: pat:Patl_0832 glycoside hydrolase family protein YP_004435699.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: pat:Patl_0831 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase) YP_004435700.1 PFAM: sulfatase; KEGG: pat:Patl_0829 sulfatase YP_004435701.1 KEGG: pat:Patl_0827 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004435702.1 PFAM: sulfatase; Ig domain protein group 2 domain protein; KEGG: pat:Patl_0826 sulfatase YP_004435703.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pat:Patl_0825 beta-glucosidase YP_004435704.1 PFAM: glycoside hydrolase family 16; KEGG: pat:Patl_0824 glycoside hydrolase family protein YP_004435705.1 PFAM: glycoside hydrolase family 29 (alpha-L-fucosidase); KEGG: pat:Patl_0823 alpha-L-fucosidase; SMART: glycoside hydrolase family 29 (alpha-L-fucosidase) YP_004435706.1 PFAM: protein of unknown function DUF718; KEGG: pat:Patl_0822 hypothetical protein YP_004435707.1 PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 42 domain 5 loop region; KEGG: pat:Patl_0821 glycoside hydrolase family protein YP_004435708.1 PFAM: sulfatase; KEGG: pat:Patl_0820 sulfatase YP_004435709.1 PFAM: sulfatase; KEGG: pat:Patl_0819 sulfatase YP_004435710.1 PFAM: sulfatase; KEGG: rba:RB2613 sulfatase AtsG YP_004435711.1 KEGG: pat:Patl_0818 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004435712.1 KEGG: pat:Patl_0817 hypothetical protein YP_004435713.1 PFAM: NHL repeat containing protein; KEGG: pat:Patl_0816 twin-arginine translocation pathway signal YP_004435714.1 PFAM: protein of unknown function DUF1549; KEGG: pat:Patl_0815 hypothetical protein YP_004435715.1 PFAM: protein of unknown function DUF1501; KEGG: pat:Patl_0814 twin-arginine translocation pathway signal YP_004435716.1 KEGG: amc:MADE_03114 outer membrane protein, porin family YP_004435717.1 PFAM: protein of unknown function DUF1080; KEGG: sli:Slin_1171 glucose/sorbosone dehydrogenase-like protein YP_004435718.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cja:CJA_2867 TonB-dependent receptor protein YP_004435719.1 KEGG: pat:Patl_0812 hypothetical protein YP_004435720.1 PFAM: protein of unknown function DUF1080; KEGG: pat:Patl_0811 hypothetical protein YP_004435721.1 KEGG: pat:Patl_0810 carbohydrate-binding family 6 protein; PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV YP_004435722.1 KEGG: rcu:RCOM_0647730 hypothetical protein YP_004435723.1 KEGG: pat:Patl_0809 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435724.1 KEGG: pat:Patl_0808 Ig-like, group 2; PFAM: Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein YP_004435725.1 KEGG: pat:Patl_0807 tryptophan halogenase YP_004435726.1 KEGG: pat:Patl_0806 hypothetical protein YP_004435727.1 PFAM: glycoside hydrolase family 16; KEGG: pat:Patl_0805 glycoside hydrolase family protein YP_004435728.1 PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; KEGG: pat:Patl_0804 glycoside hydrolase family protein YP_004435729.1 KEGG: pat:Patl_0803 tryptophan halogenase YP_004435730.1 KEGG: pat:Patl_0802 tryptophan halogenase YP_004435731.1 KEGG: pat:Patl_0801 L-fucose transporter; TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1 YP_004435732.1 KEGG: pat:Patl_0800 altronate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein YP_004435733.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_0799 aldo/keto reductase YP_004435734.1 PFAM: amidohydrolase 2; KEGG: pat:Patl_0798 amidohydrolase 2 YP_004435735.1 PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: pat:Patl_0797 alcohol dehydrogenase GroES-like protein YP_004435736.1 KEGG: pat:Patl_0796 IclR family transcriptional regulator; PFAM: regulatory protein IclR; SMART: regulatory protein IclR YP_004435737.1 PFAM: sulfatase; KEGG: pat:Patl_0795 sulfatase YP_004435738.1 KEGG: sbp:Sbal223_2810 hypothetical protein YP_004435739.1 TIGRFAM: YD repeat protein; KEGG: swp:swp_2731 YD repeat protein YP_004435740.1 KEGG: nvi:100116637 hypothetical protein LOC100116637 YP_004435741.1 PFAM: RDD domain containing protein; KEGG: pat:Patl_3559 RDD domain-containing protein YP_004435742.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pat:Patl_3560 permease YjgP/YjgQ YP_004435743.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pat:Patl_3561 permease YjgP/YjgQ YP_004435744.1 KEGG: pat:Patl_3562 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein YP_004435745.1 KEGG: pat:Patl_3563 DNA polymerase III chi subunit, HolC; PFAM: DNA polymerase III chi subunit HolC YP_004435746.1 KEGG: pat:Patl_3564 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase YP_004435747.1 PFAM: 5'-Nucleotidase domain-containing protein; KEGG: pat:Patl_3565 5'-nucleotidase-like YP_004435748.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pat:Patl_3566 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004435749.1 KEGG: pat:Patl_3567 hypothetical protein YP_004435750.1 KEGG: pat:Patl_3568 hypothetical protein YP_004435751.1 PFAM: MltA-interacting MipA family protein; KEGG: pat:Patl_3569 MltA-interacting MipA YP_004435752.1 KEGG: pat:Patl_3570 hypothetical protein YP_004435753.1 KEGG: pat:Patl_3571 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004435754.1 KEGG: pat:Patl_3572 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004435755.1 TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: pat:Patl_3573 4Fe-4S ferredoxin, iron-sulfur binding YP_004435756.1 PFAM: aminoglycoside phosphotransferase; KEGG: pat:Patl_3574 serine/threonine protein kinase YP_004435757.1 PFAM: DSBA oxidoreductase; KEGG: pat:Patl_3575 DsbA oxidoreductase YP_004435758.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_3576 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004435759.1 KEGG: pat:Patl_3577 uracil-DNA glycosylase; TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily YP_004435760.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; manually curated; KEGG: pat:Patl_3578 threonine synthase; TIGRFAM: threonine synthase YP_004435761.1 KEGG: pat:Patl_3579 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_004435762.1 KEGG: pat:Patl_3580 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: homoserine dehydrogenase; aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding YP_004435763.1 KEGG: mmw:Mmwyl1_3724 antibiotic biosynthesis monooxygenase domain-containing protein; manually curated; PFAM: Antibiotic biosynthesis monooxygenase YP_004435764.1 KEGG: rbi:RB2501_10912 hypothetical protein YP_004435765.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_0100 alcohol dehydrogenase, class III YP_004435766.1 KEGG: pla:Plav_1159 hypothetical protein YP_004435767.1 KEGG: pla:Plav_1158 hypothetical protein YP_004435768.1 KEGG: pla:Plav_1157 hypothetical protein YP_004435769.1 KEGG: pla:Plav_1156 hypothetical protein YP_004435770.1 KEGG: pla:Plav_1155 RND efflux transporter YP_004435771.1 KEGG: pla:Plav_1154 acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase YP_004435772.1 KEGG: gur:Gura_4358 hypothetical protein YP_004435773.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: bur:Bcep18194_B1207 hydantoinase B/oxoprolinase YP_004435774.1 KEGG: bur:Bcep18194_B1206 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein YP_004435775.1 PFAM: Acetone carboxylase gamma subunit; KEGG: avn:Avin_11400 acetophenone carboxylase gamma subunit YP_004435776.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase YP_004435777.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: npu:Npun_AR200 alcohol dehydrogenase YP_004435778.1 KEGG: mpt:Mpe_A0897 ATP-dependent transcriptional regulator-like protein protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR YP_004435779.1 KEGG: ppr:PBPRB1292 hypothetical protein YP_004435780.1 KEGG: dde:Dde_3488 3-dehydroquinate synthase YP_004435781.1 KEGG: maq:Maqu_4052 transposase IS3/IS911 family protein YP_004435782.1 PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_2899 ISSod2, transposase OrfA YP_004435783.1 KEGG: pat:Patl_3590 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: Glycine cleavage system P-protein-like YP_004435784.1 KEGG: pat:Patl_3591 glycine cleavage system protein H; TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein YP_004435785.1 manually curated; TIGRFAM: glycine cleavage system T protein; KEGG: pat:Patl_3592 glycine cleavage system aminomethyltransferase T; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel YP_004435786.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_3593 LysR family transcriptional regulator YP_004435788.1 KEGG: pat:Patl_3594 general secretion pathway protein A; manually curated; TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily YP_004435789.1 KEGG: pat:Patl_3595 hemolysin III family channel protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein YP_004435790.1 KEGG: pat:Patl_3596 hypothetical protein YP_004435791.1 KEGG: pat:Patl_3600 excinuclease ABC subunit C; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein YP_004435792.1 KEGG: pat:Patl_3601 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase YP_004435793.1 KEGG: pat:Patl_3602 hypothetical protein YP_004435794.1 KEGG: pat:Patl_3603 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase YP_004435795.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; response regulator receiver; KEGG: pat:Patl_3604 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver YP_004435796.1 KEGG: pat:Patl_3605 hypothetical protein YP_004435797.1 PFAM: beta-lactamase; KEGG: pat:Patl_3606 beta-lactamase YP_004435798.1 PFAM: ChaB family protein; KEGG: pat:Patl_3607 ChaB YP_004435799.1 PFAM: protein of unknown function DUF808; KEGG: pat:Patl_3608 hypothetical protein YP_004435800.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: pat:Patl_3609 protein of unknown function DUF610, YibQ YP_004435801.1 PFAM: Peptidase M23; KEGG: pat:Patl_3610 peptidase M23B YP_004435802.1 TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: pat:Patl_3611 phosphoglyceromutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein YP_004435803.1 KEGG: pat:Patl_3612 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein YP_004435804.1 KEGG: pat:Patl_3613 glutaredoxin 3; TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin YP_004435805.1 KEGG: pat:Patl_3614 preprotein translocase subunit SecB; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB YP_004435806.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pat:Patl_3615 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_004435807.1 PFAM: YiaAB two helix domain-containing protein; KEGG: pat:Patl_3616 YiaAB two helix YP_004435808.1 PFAM: Uncharacterised conserved protein UCP028477; KEGG: pat:Patl_3617 hypothetical protein YP_004435809.1 KEGG: pat:Patl_3618 hypothetical protein YP_004435810.1 SMART: helix-turn-helix domain protein; KEGG: pat:Patl_3619 XRE family transcriptional regulator YP_004435811.1 PFAM: protein of unknown function DUF328; KEGG: pat:Patl_3620 hypothetical protein YP_004435812.1 KEGG: pat:Patl_3621 hypothetical protein YP_004435813.1 KEGG: pat:Patl_3622 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase YP_004435814.1 KEGG: pat:Patl_3623 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI) YP_004435815.1 KEGG: pat:Patl_3624 hypothetical protein YP_004435816.1 PFAM: secretion protein HlyD family protein; KEGG: pat:Patl_3625 secretion protein HlyD YP_004435817.1 KEGG: pat:Patl_3626 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004435818.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3627 TonB-dependent receptor YP_004435819.1 PFAM: aminotransferase class I and II; KEGG: pat:Patl_3628 aminotransferase, class I and II YP_004435820.1 KEGG: pat:Patl_3629 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004435821.1 KEGG: pat:Patl_3630 DNA polymerase II; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; SMART: DNA-directed DNA polymerase B YP_004435822.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: pat:Patl_3631 diguanylate cyclase; SMART: GGDEF domain containing protein; Tetratricopeptide repeat YP_004435823.1 KEGG: pat:Patl_3632 hypothetical protein YP_004435824.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: pat:Patl_3633 oxidoreductase-like YP_004435825.1 KEGG: pat:Patl_3634 ribosomal biogenesis GTPase; TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related YP_004435826.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pat:Patl_3635 TonB-dependent receptor, plug YP_004435827.1 KEGG: pat:Patl_3636 hypothetical protein YP_004435828.1 KEGG: pat:Patl_3637 hypothetical protein YP_004435829.1 KEGG: pat:Patl_3638 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435830.1 KEGG: pat:Patl_3639 poly(beta-D-mannuronate) lyase; PFAM: Alginate lyase 2 YP_004435831.1 KEGG: pat:Patl_3640 poly(beta-D-mannuronate) lyase YP_004435832.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3641 short-chain dehydrogenase/reductase SDR YP_004435833.1 PFAM: RbsD or FucU transport; KEGG: pat:Patl_3642 RbsD or FucU transport YP_004435834.1 PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3643 natural resistance-associated macrophage protein YP_004435835.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: pat:Patl_3644 carbohydrate kinase; PFAM: shikimate kinase YP_004435836.1 PFAM: Alginate lyase 2; KEGG: pat:Patl_3645 alginate lyase YP_004435837.1 KEGG: pat:Patl_3646 phosphomannose isomerase-like YP_004435839.1 PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3647 natural resistance-associated macrophage protein YP_004435840.1 TIGRFAM: mannonate dehydratase; KEGG: pat:Patl_3648 mannonate dehydratase; PFAM: Mannonate dehydratase YP_004435841.1 KEGG: pat:Patl_3650 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435842.1 KEGG: pat:Patl_3651 heparinase II/III-like; manually curated; PFAM: Heparinase II/III family protein YP_004435843.1 manually curated; TIGRFAM: cation diffusion facilitator family transporter; KEGG: pat:Patl_3652 cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004435844.1 KEGG: pat:Patl_3653 hypothetical protein YP_004435845.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vcj:VCD_002777 GGDEF family protein; SMART: GGDEF domain containing protein YP_004435846.1 KEGG: pat:Patl_3654 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase beta subunit YP_004435847.1 KEGG: pat:Patl_3655 NAD(P) transhydrogenase subunit alpha YP_004435848.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pat:Patl_3656 alanine dehydrogenase/PNT-like YP_004435849.1 PFAM: PfkB domain protein; KEGG: pat:Patl_3657 PfkB YP_004435850.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3658 major facilitator transporter YP_004435851.1 KEGG: pat:Patl_3659 poly(beta-D-mannuronate) lyase YP_004435852.1 KEGG: pat:Patl_3660 GntR-like; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH YP_004435853.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3661 short-chain dehydrogenase/reductase SDR YP_004435854.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_3662 monooxygenase, FAD-binding YP_004435855.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: pat:Patl_3665 Mg2+ transporter protein, CorA-like YP_004435856.1 KEGG: pat:Patl_3666 alpha-L-glutamate ligase; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp YP_004435857.1 PFAM: protein of unknown function DUF785; KEGG: pat:Patl_3667 hypothetical protein YP_004435858.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: pat:Patl_3668 hypothetical protein YP_004435859.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_3669 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004435860.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_3670 TetR family transcriptional regulator YP_004435861.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_3671 MscS mechanosensitive ion channel YP_004435862.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pat:Patl_3672 iron-containing alcohol dehydrogenase YP_004435863.1 KEGG: pat:Patl_3673 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004435864.1 PFAM: SNARE associated Golgi protein; KEGG: pat:Patl_3675 hypothetical protein YP_004435865.1 KEGG: pat:Patl_3677 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004435866.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pat:Patl_3678 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_004435867.1 PFAM: [2Fe-2S]-binding domain-containing protein; ferredoxin; KEGG: pat:Patl_3679 (2Fe-2S)-binding YP_004435868.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3680 glutathione S-transferase YghU YP_004435869.1 PFAM: SapC family protein; KEGG: pat:Patl_3681 SapC YP_004435870.1 KEGG: pat:Patl_3682 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase YP_004435871.1 KEGG: pat:Patl_3683 SSS family solute/sodium (Na+) symporter; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004435872.1 PFAM: SapC family protein; KEGG: pat:Patl_3684 hypothetical protein YP_004435873.1 KEGG: pat:Patl_3685 tryptophan halogenase YP_004435874.1 KEGG: pat:Patl_3686 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435875.1 KEGG: pat:Patl_3687 glycoside hydrolase, clan GH-D; PFAM: glycoside hydrolase clan GH-D YP_004435876.1 KEGG: pat:Patl_3688 membrane dipeptidase; PFAM: peptidase M19 renal dipeptidase YP_004435877.1 KEGG: pat:Patl_3689 platelet-activating factor acetylhydrolase, plasma/intracellular isoform II YP_004435878.1 KEGG: pat:Patl_3690 2OG-Fe(II) oxygenase; PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit YP_004435879.1 KEGG: pat:Patl_3691 hypothetical protein YP_004435880.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pat:Patl_3692 hypothetical protein YP_004435881.1 KEGG: pat:Patl_3693 LppC lipoprotein YP_004435882.1 PFAM: Uncharacterised protein family UPF0102; KEGG: pat:Patl_3694 hypothetical protein YP_004435883.1 KEGG: pat:Patl_3695 phosphoheptose isomerase YP_004435884.1 PFAM: transport-associated; KEGG: pat:Patl_3696 transport-associated YP_004435885.1 PFAM: Stringent starvation protein B; KEGG: pat:Patl_3697 stringent starvation protein B YP_004435886.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3698 stringent starvation protein A YP_004435887.1 PFAM: cytochrome c1; KEGG: pat:Patl_3699 cytochrome c1 YP_004435888.1 PFAM: Cytochrome b/b6 domain; KEGG: pat:Patl_3700 cytochrome b/b6-like YP_004435889.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; KEGG: pat:Patl_3701 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain YP_004435890.1 PFAM: ribosomal protein S9; KEGG: pat:Patl_3702 ribosomal protein S9 YP_004435891.1 KEGG: pat:Patl_3703 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13 YP_004435892.1 KEGG: pat:Patl_3704 signal transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein YP_004435893.1 KEGG: pat:Patl_3705 hypothetical protein YP_004435894.1 KEGG: pat:Patl_3706 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase YP_004435895.1 TIGRFAM: RelA/SpoT family protein; KEGG: pat:Patl_3707 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain-containing protein; amino acid-binding ACT domain protein YP_004435896.1 KEGG: pat:Patl_3708 4'-phosphopantetheinyl transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_004435897.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: pat:Patl_3709 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ YP_004435898.1 KEGG: pat:Patl_3710 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO YP_004435899.1 KEGG: pat:Patl_3711 hypothetical protein YP_004435900.1 KEGG: pat:Patl_3712 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1 YP_004435901.1 PFAM: Disulphide bond isomerase, DsbC/G-like; KEGG: pat:Patl_3713 thiol:disulfide interchange protein DsbC YP_004435902.1 KEGG: pat:Patl_3714 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein YP_004435903.1 KEGG: pat:Patl_3715 Zn-ribbon like domain-containing protein YP_004435904.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pat:Patl_3716 twitching motility protein; SMART: AAA ATPase YP_004435905.1 KEGG: pat:Patl_3717 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E YP_004435906.1 PFAM: alanine racemase domain protein; KEGG: pat:Patl_3718 hypothetical protein YP_004435907.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: pat:Patl_3719 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_004435908.1 PFAM: protein of unknown function YGGT; KEGG: pat:Patl_3720 protein of unknown function YGGT YP_004435909.1 KEGG: pat:Patl_3721 hypothetical protein YP_004435910.1 KEGG: pat:Patl_3722 signal peptide prediction YP_004435911.1 KEGG: pat:Patl_3723 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004435912.1 KEGG: pat:Patl_3724 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004435913.1 KEGG: pat:Patl_3725 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like YP_004435914.1 TIGRFAM: xylose isomerase; KEGG: pat:Patl_3726 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel YP_004435915.1 TIGRFAM: sugar transporter; KEGG: pat:Patl_3727 sugar transporter YP_004435916.1 KEGG: pat:Patl_3728 alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase family 43 YP_004435917.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_3729 NUDIX hydrolase YP_004435918.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pat:Patl_3730 glycoside hydrolase family protein YP_004435919.1 KEGG: svo:SVI_1521 transcriptional regulator, LacI family; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004435920.1 KEGG: sde:Sde_1395 hypothetical protein; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1 YP_004435921.1 TIGRFAM: beta-galactosidase; KEGG: swp:swp_1634 beta-glucosidase; PFAM: glycoside hydrolase family 1 YP_004435922.1 KEGG: saz:Sama_1403 glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1 YP_004435923.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: swp:swp_1637 glycoside hydrolase, family 3 YP_004435924.1 KEGG: sfr:Sfri_1313 TonB-dependent receptor, plug; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435925.1 PFAM: SapC family protein; KEGG: swp:swp_1628 SapC-like protein YP_004435926.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: swp:swp_1627 transcription factor jumonji, JmjC YP_004435927.1 KEGG: swp:swp_1626 tryptophan halogenase YP_004435928.1 KEGG: swp:swp_1625 hypothetical protein YP_004435929.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pat:Patl_3731 endonuclease/exonuclease/phosphatase YP_004435930.1 KEGG: pat:Patl_3732 phospholipase D; PFAM: SNARE associated Golgi protein; phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase YP_004435931.1 KEGG: pat:Patl_3733 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein YP_004435932.1 PFAM: Redoxin domain protein; KEGG: pat:Patl_3734 redoxin YP_004435933.1 KEGG: swp:swp_2454 Na+/H+ antiporter NhaC YP_004435934.1 KEGG: pat:Patl_3735 dihydrofolate reductase; PFAM: dihydrofolate reductase region YP_004435935.1 KEGG: pat:Patl_3736 GTPase ObgE; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related YP_004435936.1 KEGG: pat:Patl_3737 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27 YP_004435937.1 KEGG: pat:Patl_3738 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21 YP_004435938.1 PFAM: Polyprenyl synthetase; KEGG: pat:Patl_3739 trans-hexaprenyltranstransferase YP_004435939.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swd:Swoo_1426 TonB-dependent receptor YP_004435940.1 KEGG: pat:Patl_3740 hypothetical protein YP_004435941.1 KEGG: pat:Patl_3741 hypothetical protein YP_004435942.1 manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: pat:Patl_3742 ECF subfamily RNA polymerase sigma-24 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2 YP_004435943.1 PFAM: MOSC domain containing protein; KEGG: pat:Patl_3743 MOSC domain-containing protein YP_004435944.1 KEGG: pat:Patl_3744 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like YP_004435945.1 manually curated; TIGRFAM: ribosomal protein S18; KEGG: pat:Patl_3745 30S ribosomal protein S18; PFAM: ribosomal protein S18 YP_004435946.1 KEGG: pat:Patl_3746 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like YP_004435947.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; KEGG: pat:Patl_3747 aerobic respiration control sensor protein ArcB; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; response regulator receiver YP_004435948.1 KEGG: pat:Patl_3748 glutamate synthase subunit alpha; PFAM: ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase; glutamate synthase alpha subunit domain protein YP_004435949.1 KEGG: pat:Patl_3749 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004435950.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pat:Patl_3750 iron-containing alcohol dehydrogenase YP_004435951.1 PFAM: DSBA oxidoreductase; KEGG: pat:Patl_3751 DsbA oxidoreductase YP_004435952.1 KEGG: pat:Patl_3752 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: chaperonin Cpn10 YP_004435953.1 KEGG: pat:Patl_3753 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1 YP_004435954.1 PFAM: Resolvase domain; KEGG: srt:Srot_2799 resolvase domain-containing protein YP_004435955.1 KEGG: mmx:MmarC6_1117 hypothetical protein YP_004435956.1 KEGG: bha:BH2146 hypothetical protein YP_004435957.1 KEGG: vvy:VV1784 hypothetical protein YP_004435958.1 PFAM: integrase family protein; KEGG: vex:VEA_002228 integrase YP_004435959.1 TIGRFAM: addiction module antidote protein, CC2985 family; KEGG: amc:MADE_01564 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain YP_004435960.1 KEGG: amc:MADE_01565 plasmid stabilization system A; manually curated; PFAM: plasmid stabilization system YP_004435961.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cps:CPS_2484 GGDEF domain-containing protein; SMART: GGDEF domain containing protein YP_004435962.1 KEGG: pat:Patl_3773 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004435963.1 manually curated; KEGG: pat:Patl_3774 hypothetical protein YP_004435964.1 manually curated; KEGG: pat:Patl_3775 hypothetical protein YP_004435965.1 KEGG: pat:Patl_3776 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435966.1 PFAM: peptidase M24; KEGG: pat:Patl_3777 peptidase M24 YP_004435967.1 KEGG: pgu:PGUG_00179 hypothetical protein YP_004435968.1 KEGG: dre:327404 AT rich interactive domain 4A (RBP1-like) YP_004435969.1 KEGG: lpp:lpp1557 hypothetical protein YP_004435970.1 KEGG: vex:VEA_003321 ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004435971.1 SMART: Water Stress and Hypersensitive response domain-containing protein; KEGG: pat:Patl_3789 lipoprotein YP_004435972.1 KEGG: pat:Patl_3790 hypothetical protein YP_004435973.1 PFAM: extracellular solute-binding protein family 3; KEGG: dak:DaAHT2_0050 extracellular solute-binding protein family 3 YP_004435974.1 manually curated; KEGG: pat:Patl_3792 hypothetical protein YP_004435975.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; KEGG: pat:Patl_3793 deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain YP_004435976.1 KEGG: pat:Patl_3794 hypothetical protein YP_004435977.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_3795 TonB-dependent receptor YP_004435978.1 KEGG: pat:Patl_3796 tetratricopeptide TPR_2; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; Sel1 domain protein repeat-containing protein YP_004435979.1 PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2836 metallophosphoesterase YP_004435980.1 KEGG: pat:Patl_3798 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_004435981.1 KEGG: pat:Patl_3799 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_004435982.1 KEGG: pat:Patl_3800 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004435984.1 KEGG: pat:Patl_3804 hypothetical protein YP_004435985.1 PFAM: FAD dependent oxidoreductase; KEGG: pat:Patl_3809 FAD dependent oxidoreductase YP_004435986.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_3810 alpha/beta hydrolase fold YP_004435987.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_3811 AMP-dependent synthetase and ligase YP_004435988.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_3812 enoyl-CoA hydratase/isomerase YP_004435989.1 KEGG: pat:Patl_3813 transcriptional regulator YP_004435990.1 KEGG: pat:Patl_3814 5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein YP_004435991.1 PFAM: natural resistance-associated macrophage protein; KEGG: pat:Patl_3815 natural resistance-associated macrophage protein YP_004435992.1 KEGG: pat:Patl_3816 hypothetical protein YP_004435993.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3819 major facilitator transporter YP_004435994.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_3988 TonB-dependent receptor YP_004435995.1 KEGG: pat:Patl_3820 alpha amylase, catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_004435996.1 manually curated; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pat:Patl_3821 LacI family transcription regulator; SMART: regulatory protein LacI YP_004435997.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_3824 glutathione S-transferase-like YP_004435998.1 KEGG: pat:Patl_3825 Zn-ribbon protein YP_004435999.1 manually curated; KEGG: pat:Patl_3826 hypothetical protein YP_004436000.1 KEGG: pat:Patl_3827 hypothetical protein YP_004436001.1 KEGG: pat:Patl_3828 hypothetical protein YP_004436002.1 KEGG: pat:Patl_3829 PhoH-like protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; AAA ATPase YP_004436003.1 KEGG: pat:Patl_3830 ATP-dependent helicase HepA; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004436004.1 PFAM: pseudouridine synthase; KEGG: pat:Patl_3831 pseudouridylate synthase YP_004436005.1 KEGG: pat:Patl_3832 hypothetical protein YP_004436006.1 KEGG: pat:Patl_3833 hypothetical protein YP_004436007.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3834 major facilitator transporter YP_004436008.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: pat:Patl_3835 diguanylate cyclase; PFAM: GGDEF domain containing protein YP_004436009.1 KEGG: pat:Patl_3836 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004436010.1 TIGRFAM: thymidylate synthase; KEGG: pat:Patl_3837 thymidylate synthase; PFAM: thymidylate synthase YP_004436011.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_3838 drug/metabolite exporter family protein YP_004436012.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: pat:Patl_3839 aromatic hydrocarbon degradation membrane protein YP_004436013.1 PFAM: Abortive infection protein; KEGG: pat:Patl_3840 abortive infection protein YP_004436014.1 PFAM: Ferritin Dps family protein; KEGG: pat:Patl_3841 ferritin and Dps YP_004436015.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3842 short-chain dehydrogenase/reductase SDR YP_004436016.1 KEGG: pat:Patl_3843 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase YP_004436017.1 PFAM: protein of unknown function DUF81; KEGG: pat:Patl_3844 hypothetical protein YP_004436018.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: pat:Patl_3845 phosphoenolpyruvate-protein phosphotransferase PtsP; SMART: GAF domain protein YP_004436019.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_3846 dinucleoside polyphosphate hydrolase YP_004436020.1 PFAM: YhhN family protein; KEGG: pat:Patl_3847 YhhN-like YP_004436021.1 KEGG: pat:Patl_3848 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH, conserved region YP_004436022.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_3849 aldehyde dehydrogenase YP_004436023.1 PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; KEGG: pat:Patl_3850 acetolactate synthase YP_004436024.1 PFAM: adenylate cyclase; KEGG: pat:Patl_3851 adenylate cyclase YP_004436025.1 KEGG: pat:Patl_3852 SH3, type 3; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein YP_004436026.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pat:Patl_3853 lysine exporter protein LysE/YggA YP_004436027.1 KEGG: pat:Patl_3854 hypothetical protein YP_004436028.1 KEGG: pat:Patl_3855 hypothetical protein YP_004436029.1 PFAM: Septum formation initiator; KEGG: pat:Patl_3856 septum formation initiator YP_004436030.1 KEGG: pat:Patl_3857 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_004436031.1 KEGG: pat:Patl_3858 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_004436032.1 PFAM: tRNA pseudouridine synthase D TruD; KEGG: pat:Patl_3859 pseudouridylate synthase YP_004436033.1 KEGG: pat:Patl_3860 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE YP_004436034.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; KEGG: pat:Patl_3861 protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004436035.1 PFAM: protein of unknown function DUF368; KEGG: pat:Patl_3862 hypothetical protein YP_004436036.1 manually curated; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; KEGG: pat:Patl_3863 peptidase M23B; SMART: Peptidoglycan-binding LysM YP_004436037.1 KEGG: pat:Patl_3864 RNA polymerase, sigma 28 subunit; TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein YP_004436038.1 KEGG: pat:Patl_3865 late embryogenesis abundant protein YP_004436039.1 manually curated; KEGG: cac:CA_C3027 phosphohydrolase YP_004436040.1 KEGG: pat:Patl_3866 transmembrane protein YP_004436041.1 KEGG: pat:Patl_1815 hypothetical protein YP_004436042.1 PFAM: SEC-C motif domain protein; KEGG: pat:Patl_3867 SecC motif-containing protein YP_004436043.1 KEGG: pat:Patl_3868 hydrolase; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein YP_004436044.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pat:Patl_3869 cytosine deaminase YP_004436045.1 KEGG: pat:Patl_3870 hypothetical protein YP_004436046.1 KEGG: pat:Patl_3871 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004436047.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; GCN5-related N-acetyltransferase; KEGG: pat:Patl_3872 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004436048.1 KEGG: pat:Patl_3873 arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2 YP_004436049.1 PFAM: beta-lactamase; KEGG: pat:Patl_3874 beta-lactamase YP_004436050.1 KEGG: pat:Patl_3875 AraC family transcriptional regulator; PFAM: Ada metal-binding domain-containing protein; helix-turn-helix- domain containing protein AraC type; AlkA domain protein; SMART: Helix-turn-helix, AraC domain YP_004436051.1 KEGG: pat:Patl_3876 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylguanine DNA methyltransferase ribonuclease domain protein YP_004436052.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_3877 hypothetical protein YP_004436053.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pat:Patl_3878 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004436054.1 KEGG: pat:Patl_3879 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein YP_004436055.1 KEGG: pat:Patl_3880 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR YP_004436056.1 KEGG: pat:Patl_3881 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS) YP_004436057.1 KEGG: dak:DaAHT2_1004 site-specific DNA-methyltransferase (adenine-specific); PFAM: N-6 DNA methylase YP_004436058.1 PFAM: restriction modification system DNA specificity domain; KEGG: dak:DaAHT2_1003 restriction modification system DNA specificity domain protein YP_004436059.1 KEGG: msu:MS2166 hypothetical protein YP_004436060.1 KEGG: tgr:Tgr7_0602 hypothetical protein; TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic YP_004436061.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: dap:Dacet_2662 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase YP_004436063.1 KEGG: rsq:Rsph17025_4400 hypothetical protein YP_004436064.1 KEGG: pol:Bpro_1920 hypothetical protein YP_004436065.1 PFAM: TnsA endonuclease; KEGG: abm:ABSDF3566 transposon Tn7-like transposition protein YP_004436066.1 KEGG: ilo:IL2612 transposon Tn7 transposition protein TnsB YP_004436067.1 KEGG: ssn:SSON_3893 ATP-binding protein YP_004436068.1 KEGG: ilo:IL2610 transposon Tn7 transposition protein TnsD YP_004436069.1 KEGG: gdj:Gdia_1685 hypothetical protein YP_004436070.1 KEGG: mmw:Mmwyl1_3231 exodeoxyribonuclease V, alpha subunit YP_004436071.1 KEGG: aga:AgaP_AGAP005886 AGAP005886-PA YP_004436072.1 KEGG: swp:swp_3867 hypothetical protein YP_004436073.1 KEGG: dev:DhcVS_437 adenylate kinase YP_004436074.1 KEGG: vvu:VV1_2191 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein YP_004436075.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfr:Sfri_2040 TonB-dependent receptor YP_004436076.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mkm:Mkms_5025 short-chain dehydrogenase/reductase SDR YP_004436077.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pla:Plav_2714 short-chain dehydrogenase/reductase SDR YP_004436078.1 PFAM: regulatory protein TetR; KEGG: cby:CLM_4067 transcriptional regulator, TetR family YP_004436079.1 KEGG: azl:AZL_d01560 enoyl-CoA hydratase; TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase YP_004436080.1 KEGG: msv:Mesil_1850 phenylacetic acid degradation protein PaaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase YP_004436081.1 PFAM: SMP-30/Gluconolaconase/LRE-like region-containing protein; KEGG: vei:Veis_0305 SMP-30/gluconolaconase/LRE domain-containing protein YP_004436082.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_2640 enoyl-CoA hydratase YP_004436083.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mmi:MMAR_0396 acyl-CoA transferase YP_004436084.1 PFAM: regulatory protein TetR; KEGG: sjp:SJA_C1-32070 TetR-family transcriptional regulator YP_004436085.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator transporter YP_004436086.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1661 acyl-CoA synthetase YP_004436087.1 KEGG: sal:Sala_0851 hypothetical protein YP_004436088.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: rce:RC1_0534 acyl-CoA dehydrogenase YP_004436089.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: dac:Daci_1395 acyl-CoA dehydrogenase domain-containing protein YP_004436090.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: abo:ABO_0983 acetyl-CoA acetyltransferase; PFAM: Thiolase-like YP_004436091.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; KEGG: psa:PST_0099 enoyl-CoA hydratase YP_004436092.1 PFAM: amine oxidase; KEGG: swi:Swit_2012 FAD dependent oxidoreductase YP_004436093.1 KEGG: spl:Spea_0594 peptidase S9 prolyl oligopeptidase YP_004436094.1 PFAM: PaaX domain protein domain; KEGG: pat:Patl_3911 PaaX-like YP_004436095.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_3912 acyl-CoA dehydrogenase-like YP_004436096.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pmx:PERMA_1767 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein YP_004436097.1 KEGG: pat:Patl_3913 hypothetical protein YP_004436098.1 KEGG: pat:Patl_3915 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004436099.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_3916 LysR family transcriptional regulator YP_004436100.1 KEGG: pat:Patl_3917 beta-lactamase-like YP_004436101.1 PFAM: protein of unknown function DUF84; KEGG: pat:Patl_3918 NTPase YP_004436102.1 KEGG: pat:Patl_3919 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004436103.1 KEGG: pat:Patl_3920 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004436104.1 PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_3921 OmpA/MotB YP_004436105.1 TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Vault protein inter-alpha-trypsin domain-containing protein; von Willebrand factor type A; KEGG: pat:Patl_3922 vault protein inter-alpha-trypsin; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa YP_004436106.1 KEGG: pat:Patl_3923 sortase family protein; TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B YP_004436107.1 KEGG: pat:Patl_3924 hypothetical protein YP_004436108.1 PFAM: esterase; KEGG: pat:Patl_3925 esterase YP_004436109.1 KEGG: pat:Patl_3926 carboxymuconolactone decarboxylase YP_004436110.1 KEGG: pat:Patl_3927 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004436111.1 PFAM: ABC-2 type transporter; KEGG: pat:Patl_3928 ABC-2 type transporter YP_004436112.1 PFAM: methyltransferase; KEGG: pat:Patl_3929 methyltransferase YP_004436113.1 KEGG: pat:Patl_3930 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein YP_004436114.1 PFAM: Pyridoxal-dependent decarboxylase; KEGG: pat:Patl_3931 pyridoxal-dependent decarboxylase YP_004436115.1 KEGG: pat:Patl_3932 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase YP_004436116.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: pat:Patl_3933 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase YP_004436117.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: pat:Patl_3934 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_004436118.1 manually curated; TIGRFAM: poly(A) polymerase; KEGG: pat:Patl_3935 poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region YP_004436119.1 PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: pat:Patl_3936 glutamate--tRNA ligase YP_004436120.1 TIGRFAM: RNA polymerase-binding protein DksA; KEGG: pat:Patl_3937 TraR/DksA family transcriptional regulator YP_004436121.1 manually curated; TIGRFAM: sugar fermentation stimulation protein; KEGG: pat:Patl_3938 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein YP_004436122.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: pat:Patl_3939 aminopeptidase B YP_004436123.1 KEGG: pat:Patl_3940 hypothetical protein YP_004436124.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: pat:Patl_3941 multiple antibiotic resistance (MarC)-related proteins YP_004436125.1 PFAM: protein of unknown function DUF416; KEGG: pat:Patl_3942 hypothetical protein YP_004436126.1 TIGRFAM: methyltransferase; KEGG: pat:Patl_3943 methyltransferase; PFAM: Conserved hypothetical protein CHP00095 YP_004436127.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: pat:Patl_3944 signal recognition particle-docking protein FtsY; SMART: AAA ATPase YP_004436128.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: pat:Patl_3945 cell division ATP-binding protein FtsE; SMART: AAA ATPase YP_004436129.1 PFAM: protein of unknown function DUF214; KEGG: pat:Patl_3946 hypothetical protein YP_004436130.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: pat:Patl_3947 diguanylate phosphodiesterase YP_004436131.1 KEGG: pat:Patl_3948 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein YP_004436132.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0322 AMP-dependent synthetase and ligase YP_004436133.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_0321 short-chain dehydrogenase/reductase SDR YP_004436134.1 PFAM: protein of unknown function DUF1446; KEGG: pat:Patl_0320 hypothetical protein YP_004436135.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; KEGG: pat:Patl_0319 carbamoyl-phosphate synthase L chain, ATP-binding YP_004436136.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pat:Patl_0318 enoyl-CoA hydratase/isomerase YP_004436137.1 PFAM: carboxyl transferase; KEGG: pat:Patl_0317 carboxyl transferase YP_004436138.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pat:Patl_0316 2-nitropropane dioxygenase, NPD YP_004436139.1 PFAM: acyl-CoA dehydrogenase domain-containing protein; KEGG: pat:Patl_0315 acyl-CoA dehydrogenase-like YP_004436140.1 KEGG: pat:Patl_0314 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004436141.1 KEGG: pat:Patl_0313 PepSY-associated TM helix YP_004436142.1 KEGG: pat:Patl_0312 hypothetical protein YP_004436143.1 KEGG: pat:Patl_0311 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004436144.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: vsp:VS_II0839 tryptophanyl-tRNA synthetase II; PFAM: aminoacyl-tRNA synthetase class Ib YP_004436145.1 KEGG: pat:Patl_0310 beta-lactamase-like YP_004436146.1 PFAM: NADPH-dependent FMN reductase; KEGG: abo:ABO_1539 hypothetical protein YP_004436147.1 KEGG: pat:Patl_0282 toxin secretion ABC transporter ATP-binding protein YP_004436148.1 KEGG: pat:Patl_0283 membrane fusion protein YP_004436149.1 KEGG: pat:Patl_0284 outer membrane protein-like YP_004436150.1 KEGG: pat:Patl_0285 hypothetical protein YP_004436151.1 KEGG: pat:Patl_0285 hypothetical protein YP_004436152.1 KEGG: pat:Patl_0286 glutamate dehydrogenase; PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region YP_004436153.1 KEGG: pat:Patl_0287 GreA/GreB family elongation factor YP_004436154.1 KEGG: pat:Patl_0288 hypothetical protein YP_004436155.1 PFAM: Na+/solute symporter; KEGG: pat:Patl_0289 Na+/solute symporter YP_004436156.1 PFAM: oxidoreductase domain protein; KEGG: pat:Patl_0290 oxidoreductase-like YP_004436157.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pat:Patl_0291 mandelate racemase/muconate lactonizing-like protein YP_004436158.1 KEGG: pat:Patl_0292 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI YP_004436159.1 KEGG: gla:GL50803_15244 hypothetical protein YP_004436160.1 KEGG: pat:Patl_0293 choline/carnitine/betaine transporter; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter YP_004436161.1 PFAM: Domain of unknown function DUF1814; KEGG: mmw:Mmwyl1_3205 hypothetical protein YP_004436162.1 KEGG: mmw:Mmwyl1_3204 hypothetical protein YP_004436163.1 KEGG: pat:Patl_4095 hypothetical protein YP_004436164.1 KEGG: pat:Patl_4096 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase YP_004436165.1 PFAM: Abortive phage infection; KEGG: sun:SUN_2433 hypothetical protein YP_004436166.1 KEGG: apb:SAR116_1298 hypothetical protein YP_004436167.1 PFAM: endonuclease, Z1 domain; KEGG: aba:Acid345_4267 endonuclease YP_004436168.1 KEGG: eba:ebA6357 hypothetical protein YP_004436169.1 KEGG: msi:Msm_0731 DNA helicase II, UvrD YP_004436170.1 PFAM: Methyltransferase type 12; KEGG: pat:Patl_4103 methyltransferase type 12 YP_004436171.1 KEGG: amc:MADE_04066 predicted transcriptional regulator YP_004436172.1 PFAM: HipA domain protein; KEGG: hch:HCH_01139 uncharacterized protein related to capsule biosynthesis enzyme YP_004436173.1 KEGG: pat:Patl_4104 hypothetical protein YP_004436174.1 KEGG: ilo:IL1592 TonB dependent receptor for iron chelates; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004436175.1 PFAM: FecR protein; KEGG: ilo:IL1593 iron-dicitrate sensor, membrane component YP_004436176.1 KEGG: ilo:IL1594 DNA-directed RNA polymerase specialized sigma subunit; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein YP_004436177.1 PFAM: metallophosphoesterase; KEGG: ttu:TERTU_0332 Ser/Thr protein phosphatase family protein YP_004436178.1 KEGG: pat:Patl_4108 hypothetical protein YP_004436179.1 KEGG: pat:Patl_4107 hypothetical protein YP_004436180.1 KEGG: pat:Patl_4106 hypothetical protein YP_004436181.1 manually curated; KEGG: pat:Patl_4107 hypothetical protein YP_004436182.1 SMART: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein; manually curated; TIGRFAM: diguanylate cyclase; KEGG: pat:Patl_4114 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_004436183.1 KEGG: pat:Patl_4115 hypothetical protein YP_004436184.1 PFAM: extracellular solute-binding protein family 1; KEGG: pat:Patl_4116 extracellular solute-binding protein YP_004436185.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_4117 binding-protein-dependent transport systems inner membrane component YP_004436186.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pat:Patl_4118 binding-protein-dependent transport systems inner membrane component YP_004436187.1 KEGG: pat:Patl_4119 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase YP_004436188.1 KEGG: pat:Patl_4120 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004436189.1 PFAM: sugar-binding domain-containing protein; KEGG: pat:Patl_4121 DeoR family transcriptional regulator YP_004436190.1 PFAM: PfkB domain protein; KEGG: pat:Patl_4122 PfkB YP_004436191.1 PFAM: regulatory protein LysR; KEGG: cbt:CLH_1594 transcriptional regulator, LysR family YP_004436192.1 KEGG: cps:CPS_3986 hypothetical protein YP_004436193.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_4123 TetR family transcriptional regulator YP_004436194.1 KEGG: pat:Patl_4124 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004436195.1 KEGG: pat:Patl_4125 hydrophobe/amphiphile efflux-1 (HAE1) family protein; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein YP_004436196.1 KEGG: pat:Patl_4126 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein YP_004436197.1 PFAM: major facilitator superfamily MFS_1; KEGG: vsp:VS_II0100 transmembrane efflux transmembrane protein YP_004436198.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_4127 TetR family transcriptional regulator YP_004436199.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_4128 glutathione S-transferase-like YP_004436200.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pat:Patl_4129 anti-ECFsigma factor, ChrR YP_004436201.1 KEGG: pat:Patl_1948 hypothetical protein YP_004436202.1 PFAM: transport-associated; KEGG: pat:Patl_4133 transport-associated YP_004436203.1 PFAM: aldo/keto reductase; KEGG: pat:Patl_4134 aldo/keto reductase YP_004436204.1 PFAM: Protein of unknown function DUF2254, membrane; KEGG: pat:Patl_4135 hypothetical protein YP_004436205.1 KEGG: bcz:pE33L54_0031 permease YP_004436206.1 KEGG: pat:Patl_4136 hypothetical protein YP_004436207.1 PFAM: protein of unknown function DUF1328; KEGG: pat:Patl_4137 hypothetical protein YP_004436208.1 KEGG: pat:Patl_4138 hypothetical protein YP_004436209.1 KEGG: pat:Patl_4139 hypothetical protein YP_004436210.1 PFAM: protein of unknown function UPF0057; KEGG: pat:Patl_4140 hypothetical protein YP_004436211.1 KEGG: pat:Patl_4141 ribonuclease BN; TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN YP_004436212.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pat:Patl_4142 MscS mechanosensitive ion channel YP_004436213.1 KEGG: pat:Patl_4143 major facilitator superfamily permease YP_004436214.1 KEGG: pat:Patl_4144 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_004436215.1 KEGG: pat:Patl_4145 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_004436216.1 KEGG: pat:Patl_4146 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein YP_004436217.1 KEGG: pat:Patl_4147 sodium/proline symporter; TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter YP_004436219.1 KEGG: pat:Patl_4148 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR YP_004436220.1 KEGG: pat:Patl_4149 lipoprotein YP_004436221.1 PFAM: VacJ family lipoprotein; KEGG: pat:Patl_4150 VacJ-like lipoprotein YP_004436222.1 KEGG: pat:Patl_4151 hypothetical protein YP_004436223.1 KEGG: pat:Patl_4152 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004436224.1 KEGG: pat:Patl_4153 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver YP_004436225.1 KEGG: pat:Patl_4154 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE3 domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004436226.1 KEGG: pat:Patl_4155 hypothetical protein YP_004436227.1 KEGG: pat:Patl_4156 two component, sigma54 specific, fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: AAA ATPase; response regulator receiver YP_004436228.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_4157 GCN5-related N-acetyltransferase YP_004436229.1 PFAM: RimK domain protein ATP-grasp; KEGG: pat:Patl_4158 RimK-like ATP-grasp YP_004436230.1 PFAM: beta-lactamase; KEGG: pat:Patl_4159 beta-lactamase YP_004436231.1 KEGG: pat:Patl_4160 hypothetical protein; PFAM: beta-lactamase; N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2 YP_004436232.1 KEGG: pat:Patl_4161 hypothetical protein YP_004436233.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: pat:Patl_4162 glycoside hydrolase family protein YP_004436234.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_4163 NUDIX hydrolase YP_004436235.1 PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: pat:Patl_4164 RpiR family transcriptional regulator YP_004436236.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_4165 TonB-dependent receptor YP_004436237.1 KEGG: pat:Patl_4166 hypothetical protein YP_004436238.1 PFAM: Uncharacterised conserved protein UCP016719; KEGG: pat:Patl_4167 hypothetical protein YP_004436239.1 KEGG: pat:Patl_4168 N-acetylmuramic acid-6-phosphate etherase; TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS) YP_004436240.1 PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: pat:Patl_4169 ATPase, BadF/BadG/BcrA/BcrD type YP_004436241.1 PFAM: Na+/solute symporter; KEGG: pat:Patl_4170 Na+/solute symporter YP_004436242.1 PFAM: NLP/P60 protein; KEGG: pat:Patl_4171 NLP/P60 YP_004436243.1 PFAM: protein of unknown function DUF819; KEGG: pat:Patl_4172 hypothetical protein YP_004436244.1 KEGG: pat:Patl_4173 glutamine-fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS) YP_004436245.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; KEGG: pat:Patl_4174 N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_004436246.1 KEGG: pat:Patl_4175 glucose/galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1 YP_004436247.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: pat:Patl_4176 peptidase U61, LD-carboxypeptidase A YP_004436248.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_4177 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004436249.1 KEGG: hch:HCH_04930 sensor protein/histidine kinase YP_004436250.1 KEGG: pat:Patl_4180 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004436251.1 KEGG: pat:Patl_4181 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004436252.1 KEGG: pat:Patl_4182 hypothetical protein YP_004436253.1 KEGG: pat:Patl_4183 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer YP_004436254.1 KEGG: pat:Patl_4184 hypothetical protein YP_004436255.1 KEGG: pat:Patl_4185 hypothetical protein YP_004436256.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_4186 TetR family transcriptional regulator YP_004436257.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: pat:Patl_4187 malate dehydrogenase YP_004436258.1 KEGG: pat:Patl_4188 ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31 YP_004436259.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; KEGG: pat:Patl_4189 primosomal protein N'; SMART: DEAD-like helicase ; helicase domain protein YP_004436260.1 PFAM: Sporulation domain-containing protein; KEGG: pat:Patl_4190 sporulation related YP_004436261.1 PFAM: 20S proteasome A and B subunits; KEGG: pat:Patl_4191 ATP-dependent protease peptidase subunit YP_004436262.1 TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; KEGG: pat:Patl_4192 ATP-dependent protease ATP-binding subunit HslU; SMART: AAA ATPase YP_004436263.1 PFAM: beta-lactamase; KEGG: pat:Patl_4193 beta-lactamase YP_004436264.1 KEGG: bpm:BURPS1710b_A0941 oxidoreductase, zinc-binding dehydrogenase family protein YP_004436265.1 KEGG: pat:Patl_4194 hypothetical protein YP_004436266.1 KEGG: pat:Patl_4195 hypothetical protein YP_004436267.1 KEGG: pat:Patl_4196 hypothetical protein YP_004436268.1 KEGG: pat:Patl_4197 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA YP_004436269.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pat:Patl_4198 LysR family transcriptional regulator YP_004436270.1 KEGG: pat:Patl_4199 SH3, type 3; PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein YP_004436271.1 KEGG: pat:Patl_4200 hypothetical protein YP_004436272.1 PFAM: glutamine synthetase catalytic region; KEGG: pat:Patl_4201 glutamine synthetase, catalytic region YP_004436273.1 KEGG: pat:Patl_4202 hypothetical protein YP_004436274.1 KEGG: pat:Patl_4203 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004436275.1 KEGG: pat:Patl_4204 preprotein translocase subunit SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein YP_004436276.1 PFAM: protein of unknown function DUF155; KEGG: pat:Patl_4205 hypothetical protein YP_004436277.1 KEGG: pat:Patl_4206 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004436278.1 KEGG: pat:Patl_4207 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F YP_004436279.1 PFAM: methyladenine glycosylase; KEGG: pat:Patl_4208 hypothetical protein YP_004436280.1 KEGG: pat:Patl_4209 ubiquinone/menaquinone biosynthesis methyltransferases; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004436281.1 PFAM: Sterol-binding domain protein; KEGG: pat:Patl_4210 hypothetical protein YP_004436282.1 KEGG: pat:Patl_4211 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain-containing protein YP_004436283.1 KEGG: pat:Patl_4212 hypothetical protein YP_004436284.1 KEGG: pat:Patl_4213 twin arginine-targeting protein translocase; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_004436285.1 KEGG: pat:Patl_4214 twin-arginine translocation protein, TatB subunit; TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106 YP_004436286.1 KEGG: pat:Patl_4215 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase YP_004436287.1 KEGG: pat:Patl_4216 hypothetical protein YP_004436288.1 PFAM: TatD-related deoxyribonuclease; KEGG: pat:Patl_4217 TatD-related deoxyribonuclease YP_004436289.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; KEGG: pat:Patl_4218 diguanylate cyclase; SMART: GGDEF domain containing protein YP_004436290.1 KEGG: pat:Patl_4219 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase YP_004436291.1 KEGG: pat:Patl_4220 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase YP_004436292.1 KEGG: pat:Patl_4221 ATP-dependent RNA helicase RhlB; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_004436293.1 KEGG: pat:Patl_4222 thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein YP_004436294.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; KEGG: pat:Patl_4223 transcription termination factor Rho; SMART: Cold shock protein; AAA ATPase YP_004436295.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: pat:Patl_4224 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_004436296.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: pat:Patl_4225 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp YP_004436297.1 KEGG: pat:Patl_3454 hypothetical protein YP_004436298.1 TIGRFAM: acetyl-CoA C-acyltransferase FadA; acetyl-CoA acetyltransferase; KEGG: pat:Patl_0202 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like YP_004436299.1 KEGG: pat:Patl_0201 multifunctional fatty acid oxidation complex subunit alpha; TIGRFAM: fatty oxidation complex, alpha subunit FadB; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein YP_004436300.1 PFAM: Lytic transglycosylase catalytic; KEGG: pat:Patl_0200 lytic transglycosylase, catalytic YP_004436301.1 PFAM: peptidase M24; KEGG: pat:Patl_0199 proline dipeptidase YP_004436302.1 KEGG: pat:Patl_0198 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein YP_004436303.1 PFAM: protein of unknown function DUF107; KEGG: pat:Patl_0197 hypothetical protein YP_004436304.1 PFAM: Glutathione S-transferase domain; KEGG: pat:Patl_0196 glutathione S-transferase-like YP_004436305.1 KEGG: pat:Patl_0195 hypothetical protein YP_004436306.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pat:Patl_0193 peptidase U62, modulator of DNA gyrase YP_004436307.1 PFAM: protein of unknown function DUF615; KEGG: pat:Patl_0192 hypothetical protein YP_004436308.1 KEGG: pat:Patl_0191 Ig-like, group 1; PFAM: Ig domain protein group 1 domain protein; SMART: Ig domain protein group 1 domain protein YP_004436309.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pat:Patl_0190 peptidase U62, modulator of DNA gyrase YP_004436310.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pat:Patl_0189 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004436311.1 KEGG: pat:Patl_0188 hypothetical protein YP_004436312.1 KEGG: pat:Patl_0187 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_004436313.1 KEGG: pat:Patl_0186 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein YP_004436314.1 KEGG: pat:Patl_0185 rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD YP_004436315.1 KEGG: pat:Patl_0184 rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC YP_004436316.1 KEGG: pat:Patl_0183 rod shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl YP_004436317.1 KEGG: pat:Patl_0182 CUB domain-containing protein; PFAM: CUB protein; SMART: CUB protein YP_004436318.1 manually curated; KEGG: pat:Patl_0181 type II secretory pathway component YP_004436319.1 KEGG: pat:Patl_0180 prepilin-type cleavage/methylation YP_004436320.1 KEGG: pat:Patl_0179 prepilin-type cleavage/methylation-like YP_004436321.1 manually curated; KEGG: pat:Patl_0178 prepilin-type cleavage/methylation YP_004436322.1 KEGG: pat:Patl_0177 prepilin-type cleavage/methylation YP_004436323.1 KEGG: pat:Patl_0176 prepilin-type cleavage/methylation YP_004436324.1 KEGG: pat:Patl_0175 hypothetical protein YP_004436325.1 PFAM: Type II secretion system F domain; KEGG: pat:Patl_0174 type II secretion system protein YP_004436326.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: pat:Patl_0173 type II secretion system protein E YP_004436327.1 KEGG: pat:Patl_0172 hypothetical protein YP_004436328.1 KEGG: pat:Patl_0171 MSHA biogenesis protein MshM YP_004436329.1 KEGG: pat:Patl_0170 pilus (MSHA type) biogenesis protein MshL; TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin domain protein; Secretin/TonB short domain YP_004436330.1 KEGG: pat:Patl_0169 hypothetical protein YP_004436331.1 KEGG: pat:Patl_0168 MSHA biogenesis protein MshJ YP_004436332.1 KEGG: pat:Patl_0167 hypothetical protein YP_004436333.1 KEGG: pat:Patl_0166 hypothetical protein YP_004436334.1 KEGG: pat:Patl_0165 hypothetical protein YP_004436335.1 TIGRFAM: arginine N-succinyltransferase; arginine/ornithine succinyltransferase subunit; KEGG: pat:Patl_0164 arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit YP_004436336.1 TIGRFAM: succinylornithine transaminase family; acetylornithine and succinylornithine aminotransferase; KEGG: pat:Patl_0163 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; PFAM: aminotransferase class-III YP_004436337.1 KEGG: pat:Patl_0162 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type YP_004436338.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: pat:Patl_4080 diguanylate cyclase; SMART: GGDEF domain containing protein; response regulator receiver YP_004436339.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0161 TetR family transcriptional regulator YP_004436340.1 KEGG: pat:Patl_0160 amine dehydrogenase; PFAM: methylamine dehydrogenase heavy subunit YP_004436341.1 KEGG: pat:Patl_0159 hypothetical protein YP_004436342.1 PFAM: Redoxin domain protein; KEGG: pat:Patl_0158 redoxin YP_004436343.1 KEGG: pat:Patl_0157 twin-arginine translocation pathway signal; PFAM: methylamine dehydrogenase light chain domain protein YP_004436344.1 KEGG: pat:Patl_0156 cytochrome c, class I YP_004436345.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0155 TonB-dependent receptor YP_004436346.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_0154 AMP-dependent synthetase and ligase YP_004436347.1 PFAM: Aldehyde Dehydrogenase; KEGG: pat:Patl_0153 betaine-aldehyde dehydrogenase YP_004436348.1 KEGG: son:SO_1424 hypothetical protein YP_004436349.1 KEGG: ilo:IL1570 hypothetical protein YP_004436350.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0149 TonB-dependent receptor YP_004436351.1 KEGG: pat:Patl_2737 hypothetical protein YP_004436352.1 KEGG: pat:Patl_0148 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n YP_004436353.1 KEGG: pat:Patl_0147 major facilitator transporter; manually curated; PFAM: major facilitator superfamily MFS_1 YP_004436354.1 KEGG: pat:Patl_0146 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related YP_004436355.1 PFAM: thioesterase superfamily protein; KEGG: pat:Patl_0145 thioesterase superfamily protein YP_004436356.1 KEGG: pat:Patl_0144 2OG-Fe(II) oxygenase; manually curated; SMART: Prolyl 4-hydroxylase alpha subunit YP_004436357.1 KEGG: pat:Patl_0142 hypothetical protein YP_004436358.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_0141 major facilitator transporter YP_004436359.1 KEGG: pat:Patl_0140 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase YP_004436360.1 KEGG: pat:Patl_0139 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase YP_004436361.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_0138 ADP-ribose diphosphatase NudE YP_004436362.1 KEGG: pat:Patl_0137 3'(2'),5'-bisphosphate nucleotidase; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase YP_004436363.1 PFAM: YceI family protein; KEGG: pat:Patl_0136 YceI YP_004436364.1 PFAM: protein of unknown function UPF0270; KEGG: pat:Patl_0135 hypothetical protein YP_004436365.1 PFAM: alpha/beta hydrolase fold; KEGG: pat:Patl_0134 alpha/beta hydrolase fold YP_004436366.1 PFAM: Uncharacterised protein family UPF0324; KEGG: pat:Patl_0115 hypothetical protein YP_004436367.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_0114 LysR family transcriptional regulator YP_004436368.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_0113 GCN5-related N-acetyltransferase YP_004436369.1 KEGG: pat:Patl_0112 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase YP_004436370.1 KEGG: pat:Patl_0111 hypothetical protein; manually curated; PFAM: Conserved hypothetical protein CHP02443 YP_004436371.1 PFAM: SlyX family protein; KEGG: pat:Patl_0110 SlyX YP_004436372.1 PFAM: WD40 repeat, subgroup; KEGG: pat:Patl_0109 WD-40 repeat-containing protein YP_004436373.1 manually curated; KEGG: pat:Patl_0108 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein YP_004436374.1 KEGG: pat:Patl_0107 transcription elongation factor GreB; TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain-containing protein YP_004436375.1 KEGG: pat:Patl_4226 RNA binding S1; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold YP_004436376.1 KEGG: pat:Patl_4227 lipoprotein YP_004436377.1 KEGG: pat:Patl_4228 hypothetical protein YP_004436378.1 KEGG: pat:Patl_4229 hypothetical protein YP_004436379.1 KEGG: pat:Patl_4230 BioH protein; TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold YP_004436380.1 KEGG: pat:Patl_4231 amidophosphoribosyltransferases-like YP_004436381.1 KEGG: pat:Patl_4232 peptidase M14, carboxypeptidase A; PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A YP_004436382.1 KEGG: pat:Patl_4233 DNA uptake protein; TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein YP_004436383.1 KEGG: cps:CPS_0221 hypothetical protein YP_004436384.1 KEGG: pat:Patl_4234 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE YP_004436385.1 PFAM: polysaccharide deacetylase; KEGG: pat:Patl_4235 polysaccharide deacetylase YP_004436386.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_4236 GCN5-related N-acetyltransferase YP_004436387.1 PFAM: electron transport protein SCO1/SenC; KEGG: pat:Patl_4237 electron transport protein SCO1/SenC YP_004436388.1 KEGG: pat:Patl_4238 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase YP_004436389.1 PFAM: cytochrome oxidase assembly; KEGG: pat:Patl_4239 cytochrome oxidase assembly YP_004436390.1 KEGG: pat:Patl_4240 hypothetical protein YP_004436391.1 manually curated; KEGG: pat:Patl_4241 hypothetical protein YP_004436392.1 KEGG: pat:Patl_4242 hypothetical protein YP_004436393.1 PFAM: cytochrome c oxidase subunit III; KEGG: pat:Patl_4243 cytochrome c oxidase, subunit III YP_004436394.1 KEGG: pat:Patl_4244 cytochrome c oxidase assembly protein; manually curated; PFAM: cytochrome c oxidase assembly protein CtaG/Cox11 YP_004436395.1 KEGG: afm:AFUA_5G01590 geranylgeranyl pyrophosphate synthase YP_004436396.1 KEGG: pat:Patl_4245 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I YP_004436397.1 KEGG: pat:Patl_4246 cytochrome c oxidase, subunit II; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome c class I YP_004436398.1 KEGG: pat:Patl_4247 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region YP_004436399.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pat:Patl_4248 glycerol-3-phosphate O-acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_004436400.1 KEGG: pat:Patl_4249 threonine dehydratase, biosynthetic; TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; Threonine dehydratase domain-containing protein YP_004436401.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: pat:Patl_4250 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_004436402.1 PFAM: Uncharacterised protein family UPF0126; KEGG: pat:Patl_4251 hypothetical protein YP_004436403.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: pat:Patl_4252 Mg chelatase, subunit ChlI; SMART: AAA ATPase YP_004436404.1 manually curated; KEGG: pat:Patl_4253 PepSY-associated TM helix YP_004436405.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pat:Patl_4254 DNA-binding transcriptional regulator IlvY YP_004436406.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: pat:Patl_4255 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain-containing protein YP_004436407.1 manually curated; KEGG: pat:Patl_4256 hypothetical protein YP_004436408.1 PFAM: OmpA/MotB domain protein; KEGG: pat:Patl_4257 OmpA/MotB YP_004436409.1 KEGG: pat:Patl_4258 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1 YP_004436410.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: pat:Patl_4261 hypothetical protein YP_004436411.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pat:Patl_4262 hypothetical protein YP_004436412.1 PFAM: Invasion associated locus B family protein; KEGG: pat:Patl_4264 invasion associated locus B YP_004436413.1 manually curated; PFAM: Nidogen extracellular domain protein; KEGG: pat:Patl_4265 nidogen, extracellular region; SMART: Nidogen extracellular domain protein YP_004436414.1 KEGG: pat:Patl_4266 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004436415.1 KEGG: pat:Patl_4267 hypothetical protein YP_004436416.1 KEGG: pat:Patl_4268 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase YP_004436417.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: pat:Patl_4269 gamma-glutamyl kinase; SMART: PUA domain containing protein YP_004436418.1 KEGG: pat:Patl_4270 Zn-dependent aminopeptidase YP_004436419.1 KEGG: pat:Patl_4271 orphan protein YP_004436420.1 PFAM: protein of unknown function UPF0118; KEGG: pat:Patl_4272 hypothetical protein YP_004436421.1 KEGG: amc:MADE_02758 hypothetical protein YP_004436422.1 KEGG: pat:Patl_4273 hypothetical protein YP_004436423.1 PFAM: fatty acid hydroxylase; KEGG: pat:Patl_4274 hypothetical protein YP_004436424.1 KEGG: pat:Patl_4275 hypothetical protein YP_004436425.1 PFAM: protein of unknown function DUF1285; KEGG: pat:Patl_4276 hypothetical protein YP_004436426.1 PFAM: amidohydrolase; KEGG: pat:Patl_4277 amidohydrolase YP_004436427.1 KEGG: pat:Patl_4278 hypothetical protein YP_004436428.1 KEGG: pat:Patl_4279 hypothetical protein YP_004436429.1 KEGG: amc:MADE_04044 hypothetical protein YP_004436430.1 PFAM: SirA-like domain-containing protein; KEGG: pat:Patl_4280 SirA-like YP_004436431.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: pat:Patl_4281 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_004436432.1 TIGRFAM: ribonuclease PH; KEGG: pat:Patl_4282 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2 YP_004436433.1 PFAM: YicC-like domain-containing protein; domain of unknown function DUF1732; KEGG: pat:Patl_4283 hypothetical protein YP_004436435.1 PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sde:Sde_1231 TonB-dependent receptor YP_004436436.1 PFAM: major facilitator superfamily MFS_1; KEGG: ebi:EbC_03990 permease, MFS family YP_004436437.1 PFAM: major facilitator superfamily MFS_1; KEGG: cby:CLM_4065 major facilitator family protein YP_004436438.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: glo:Glov_0152 transcriptional regulator, LysR family YP_004436439.1 KEGG: cat:CA2559_00465 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain YP_004436440.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sha:SH1065 hypothetical protein YP_004436441.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pat:Patl_4285 metal dependent phosphohydrolase; SMART: metal-dependent phosphohydrolase HD region YP_004436442.1 KEGG: pat:Patl_4286 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug YP_004436443.1 PFAM: SapC family protein; KEGG: pat:Patl_4287 SapC YP_004436444.1 SMART: transcription factor jumonji jmjC domain-containing protein; KEGG: pat:Patl_4288 transcription factor jumonji/aspartyl beta-hydroxylase YP_004436445.1 KEGG: pat:Patl_4289 tryptophan halogenase YP_004436446.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: pat:Patl_4291 methylated-DNA--protein-cysteine methyltransferase YP_004436447.1 PFAM: DTW domain containing protein; KEGG: pat:Patl_4292 DTW domain-containing protein YP_004436448.1 KEGG: pat:Patl_4293 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor transmembrane region; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver YP_004436449.1 KEGG: pat:Patl_4294 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit-like YP_004436450.1 TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: pat:Patl_4295 F0F1 ATP synthase subunit beta; SMART: AAA ATPase YP_004436451.1 KEGG: pat:Patl_4296 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit YP_004436452.1 KEGG: pat:Patl_4297 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein YP_004436453.1 KEGG: pat:Patl_4298 ATP synthase F1, delta subunit; TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit YP_004436454.1 KEGG: pat:Patl_4299 F0F1 ATP synthase subunit B; TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit YP_004436455.1 KEGG: pat:Patl_4300 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit YP_004436456.1 KEGG: pat:Patl_4301 F0F1 ATP synthase subunit A; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit YP_004436457.1 PFAM: ATP synthase I chain; KEGG: pat:Patl_4302 ATP synthase I chain YP_004436458.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pat:Patl_4303 ParB-like partition proteins; SMART: ParB domain protein nuclease YP_004436459.1 KEGG: pat:Patl_4304 cobyrinic acid a,c-diamide synthase YP_004436460.1 KEGG: pat:Patl_4305 methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein YP_004436461.1 KEGG: pat:Patl_4306 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A YP_004436462.1 KEGG: pat:Patl_4307 hypothetical protein YP_004436463.1 KEGG: pat:Patl_4308 hypothetical protein YP_004436464.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: pat:Patl_4309 flavodoxin/nitric oxide synthase YP_004436465.1 KEGG: pat:Patl_4310 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related YP_004436466.1 PFAM: protein of unknown function DUF520; KEGG: pat:Patl_4311 nucleotide-binding protein YP_004436467.1 KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family domain containing; membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein YP_004436468.1 KEGG: pat:Patl_4313 hypothetical protein; manually curated; PFAM: protein of unknown function DUF37 YP_004436469.1 KEGG: pat:Patl_4314 ribonuclease P protein component; TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein YP_004436470.1 KEGG: pat:Patl_4315 ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34 YP_004436471.1 KEGG: pbe:PB106857.00.0 hypothetical protein YP_004436472.1 KEGG: rfr:Rfer_4362 hypothetical protein YP_004436473.1 KEGG: ter:Tery_2782 cobalt transport protein CbiM YP_004436474.1 KEGG: ahe:Arch_0122 protein of unknown function SprT YP_004436475.1 KEGG: tva:TVAG_473490 hypothetical protein YP_004436476.1 KEGG: sul:SYO3AOP1_1521 transglutaminase domain protein YP_004436477.1 KEGG: rpf:Rpic12D_4980 hypothetical protein YP_004436478.1 KEGG: rsq:Rsph17025_1934 beta-lactamase domain-containing protein YP_004436479.1 KEGG: cim:CIMG_09224 hypothetical protein YP_004436480.1 KEGG: maq:Maqu_4130 hypothetical protein YP_004436481.1 KEGG: dds:Ddes_1298 hypothetical protein YP_004436482.1 KEGG: enc:ECL_01672 hypothetical protein YP_004436483.1 KEGG: hha:Hhal_0943 thioredoxin domain-containing protein YP_004436484.1 KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB YP_004436485.1 KEGG: enc:ECL_B013 hypothetical protein YP_004436486.1 KEGG: vpa:VPA1426 hypothetical protein YP_004436487.1 KEGG: vvy:VVP41 hypothetical protein YP_004436488.1 KEGG: cgt:cgR_2009 hypothetical protein YP_004436489.1 KEGG: lrl:LC705_02823 PTS system mannose-specific transporter subunit IID YP_004436490.1 PFAM: DNA repair protein RadC; KEGG: aav:Aave_0492 DNA repair protein RadC YP_004436491.1 KEGG: fph:Fphi_1150 putative cytochrome P450 YP_004436492.1 KEGG: fgr:FG04511.1 hypothetical protein YP_004436493.1 KEGG: ech:ECH_0605 glutamyl-tRNA synthetase YP_004436494.1 KEGG: xne:XNC1_p0058 hypothetical protein YP_004436495.1 KEGG: see:SNSL254_p_0127 hypothetical protein YP_004436496.1 KEGG: str:Sterm_1886 transcriptional regulator, AraC family YP_004436498.1 KEGG: mcc:702777 epidermal growth factor receptor pathway substrate 8 YP_004436499.1 KEGG: neq:NEQ120 hypothetical protein YP_004436500.1 KEGG: rcu:RCOM_1906590 Lipid-A-disaccharide synthase, putative YP_004436502.1 KEGG: mlo:mll4997 hypothetical protein YP_004436503.1 KEGG: kol:Kole_1800 hypothetical protein YP_004436504.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCVd0145 putative cytosine-specific DNA methyltransferase YP_004436505.1 PFAM: Protein of unknown function DUF2136; KEGG: son:SO_A0072 hypothetical protein YP_004436506.1 KEGG: pay:PAU_00583 hypothetical protein YP_004436507.1 KEGG: nhl:Nhal_3000 hypothetical protein YP_004436508.1 KEGG: enc:ECL_B015 hypothetical protein YP_004436510.1 KEGG: ach:Achl_3909 hypothetical protein YP_004436511.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pna:Pnap_4214 phosphoadenosine phosphosulfate reductase YP_004436512.1 KEGG: mea:Mex_1p3950 hypothetical protein YP_004436513.1 KEGG: xne:XNC1_p0059 hypothetical protein YP_004436514.1 KEGG: bfs:BF3865 fusion protein YP_004436515.1 KEGG: ngr:NAEGRDRAFT_70609 hypothetical protein YP_004436517.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: pat:Patl_2345 putative prophage repressor YP_004436518.1 KEGG: eum:ECUMN_0879 hypothetical protein from bacteriophage origin YP_004436519.1 KEGG: eum:ECUMN_0880 hypothetical protein from phage origin, putative nucleoid-associated protein YP_004436520.1 KEGG: gfo:GFO_0826 two-component system sensor histidine kinase YP_004436521.1 KEGG: ngr:NAEGRDRAFT_67190 hypothetical protein YP_004436522.1 KEGG: shm:Shewmr7_1180 YD repeat-containing protein; TIGRFAM: YD repeat protein; PFAM: Fibronectin type III domain protein; YD repeat-containing protein YP_004436523.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pat:Patl_2344 DNA-directed DNA polymerase YP_004436524.1 KEGG: mea:Mex_2p0049 hypothetical protein YP_004436525.1 KEGG: maq:Maqu_4281 hypothetical protein YP_004436526.1 KEGG: lpa:lpa_03908 DotC YP_004436527.1 PFAM: type II secretion system protein E; KEGG: cbs:COXBURSA331_A1833 Dot/Icm secretion system ATPase DotB YP_004436528.1 PFAM: StbA family protein; KEGG: mea:Mex_2p0044 hypothetical protein YP_004436529.1 KEGG: dme:Dmel_CG2175 defective chorion 1 YP_004436530.1 KEGG: maq:Maqu_4201 hypothetical protein YP_004436531.1 KEGG: dak:DaAHT2_0478 protein of unknown function DUF1566 YP_004436532.1 KEGG: cja:CJA_1223 hypothetical protein YP_004436533.1 KEGG: slo:Shew_0988 hypothetical protein YP_004436534.1 KEGG: dmo:Dmoj_GI13200 GI13200 gene product from transcript GI13200-RA YP_004436535.1 KEGG: bhy:BHWA1_01395 hypothetical protein YP_004436536.1 KEGG: slo:Shew_0987 hypothetical protein YP_004436537.1 KEGG: bmj:BMULJ_05039 putative membrane-anchored cell surface protein YP_004436538.1 KEGG: bur:Bcep18194_C7374 YadA/haemagluttinin like protein YP_004436539.1 KEGG: mgm:Mmc1_3605 zinc finger-domain-containing protein YP_004436540.1 KEGG: shl:Shal_4058 hypothetical protein YP_004436541.1 KEGG: maq:Maqu_4265 hypothetical protein YP_004436542.1 KEGG: bvi:Bcep1808_7654 TrbA-like protein YP_004436543.1 KEGG: sax:USA300HOU_0053 hypothetical protein YP_004436544.1 KEGG: hmu:Hmuk_0535 hypothetical protein YP_004436545.1 KEGG: cpv:cgd4_1370 ABC transporter YP_004436546.1 PFAM: N-6 DNA methylase; KEGG: seq:SZO_12790 helicase YP_004436547.1 KEGG: tva:TVAG_411790 hypothetical protein YP_004436548.1 KEGG: wch:wcw_1143 putative O protein-disulfide isomerase YP_004436549.1 KEGG: ant:Arnit_2880 hypothetical protein YP_004436550.1 manually curated; KEGG: ani:AN5144.2 hypothetical protein YP_004436551.1 KEGG: xcv:XCVd0170 putative IcmL-like type IV secretion system protein YP_004436552.1 KEGG: bid:Bind_3863 DotH YP_004436553.1 KEGG: cel:K07E12.1 DIsplaced Gonad YP_004436554.1 KEGG: tet:TTHERM_01276340 hypothetical protein YP_004436555.1 KEGG: ypi:YpsIP31758_B0118 putative type IV secretion system protein IcmC/DotIE YP_004436556.1 KEGG: sus:Acid_3242 hypothetical protein YP_004436557.1 KEGG: dre:799229 beta-catenin-like YP_004436558.1 KEGG: llo:LLO_2780 hypothetical protein of unknown function YP_004436559.1 KEGG: fgr:FG04497.1 hypothetical protein YP_004436560.1 PFAM: integrase family protein; KEGG: amc:MADE_02045 site-specific recombinase XerD-like protein YP_004436561.1 KEGG: drt:Dret_0145 MscS mechanosensitive ion channel YP_004436562.1 KEGG: api:100164736 similar to CG17034 CG17034-PD YP_004436563.1 PFAM: MaoC domain protein dehydratase; KEGG: bge:BC1002_0181 MaoC domain protein dehydratase YP_004436565.1 KEGG: gau:GAU_3799 hypothetical membrane protein YP_004436566.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: shw:Sputw3181_4010 glutathione-dependent formaldehyde-activating, GFA YP_004436567.1 KEGG: pat:Patl_2736 GCN5-related N-acetyltransferase YP_004436568.1 PFAM: transposase Tn3 family protein; KEGG: sfr:Sfri_3466 transposase Tn3 family protein YP_004436569.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: rfr:Rfer_1196 phage integrase YP_004436570.1 PFAM: transposase; KEGG: dsh:Dshi_3662 putative transposase YP_004436571.1 KEGG: lbc:LACBIDRAFT_301190 hypothetical protein YP_004436572.1 KEGG: plu:plu4588 hypothetical protein YP_004436573.1 PFAM: transposase IS4 family protein; KEGG: pat:Patl_3451 transposase, IS4 YP_004436574.1 KEGG: zpr:ZPR_2076 cysteine synthase YP_004436575.1 KEGG: dha:DEHA2E09548g DEHA2E09548p YP_004436576.1 KEGG: fno:Fnod_1362 DNA replication and repair protein RecF YP_004436577.1 KEGG: ate:Athe_0648 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein YP_004436578.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; KEGG: efe:EFER_1580 cAMP phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein YP_004436579.1 KEGG: mdo:100029118 similar to lysyl-tRNA synthetase YP_004436580.1 KEGG: amc:MADE_00221 excinuclease ABC subunit A YP_004436582.1 KEGG: ecb:100062071 hypothetical protein LOC100062071 YP_004436583.1 KEGG: pfh:PFHG_05022 conserved hypothetical protein YP_004436584.1 KEGG: tet:TTHERM_00071060 hypothetical protein YP_004436585.1 PFAM: NAD-dependent epimerase/dehydratase; Vitamin K epoxide reductase; KEGG: cbd:CBUD_0801 dTDP-glucose 4,6-dehydratase YP_004436586.1 KEGG: tkm:TK90_1640 hypothetical protein YP_004436587.1 PFAM: Protein of unknown function DUF2078, membrane; KEGG: sal:Sala_2554 hypothetical protein YP_004436588.1 PFAM: transposase Tn3 family protein; KEGG: shn:Shewana3_4307 transposase Tn3 family protein YP_004436589.1 KEGG: shn:Shewana3_4308 hypothetical protein YP_004436590.1 KEGG: sal:Sala_2513 hypothetical protein YP_004436591.1 KEGG: shn:Shewana3_4309 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR YP_004436592.1 KEGG: shn:Shewana3_4310 diguanylate phosphodiesterase YP_004436593.1 KEGG: shn:Shewana3_4311 putative mercuric reductase; TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region YP_004436594.1 KEGG: shn:Shewana3_4312 putative mercury transport protein MerC YP_004436595.1 KEGG: shn:Shewana3_4313 mercuric transport protein periplasmic component; TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein YP_004436596.1 PFAM: Mercuric transport protein MerT; KEGG: shn:Shewana3_4314 mercuric transporter MerT YP_004436597.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: shn:Shewana3_4315 MerR family transcriptional regulator; SMART: regulatory protein MerR YP_004436598.1 PFAM: integrase family protein; KEGG: shn:Shewana3_4316 phage integrase family protein YP_004436599.1 PFAM: protein of unknown function UPF0060; KEGG: nde:NIDE0063 hypothetical protein YP_004436600.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: npu:Npun_F1373 asparagine synthase (glutamine-hydrolyzing); PFAM: asparagine synthase; glutamine amidotransferase class-II YP_004436601.1 KEGG: pat:Patl_2031 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_004436602.1 KEGG: pat:Patl_2030 biotin/lipoyl attachment YP_004436603.1 PFAM: outer membrane efflux protein; KEGG: pat:Patl_2029 outer membrane efflux protein YP_004436604.1 KEGG: pat:Patl_2028 hypothetical protein YP_004436605.1 KEGG: pat:Patl_2027 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004436606.1 KEGG: pat:Patl_2026 hypothetical protein YP_004436607.1 PFAM: cation efflux protein; KEGG: pat:Patl_2025 cation efflux protein YP_004436608.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; KEGG: pat:Patl_2024 MerR family transcriptional regulator; SMART: regulatory protein MerR YP_004436609.1 KEGG: vha:VIBHAR_05585 hypothetical protein YP_004436610.1 KEGG: shw:Sputw3181_0347 hypothetical protein YP_004436611.1 PFAM: Penicillinase repressor; KEGG: spc:Sputcn32_3999 transcriptional regulator, TrmB YP_004436612.1 PFAM: peptidase M56 BlaR1; KEGG: kko:Kkor_1275 peptidase M56 BlaR1 YP_004436613.1 PFAM: outer membrane efflux protein; KEGG: shn:Shewana3_4386 outer membrane efflux protein YP_004436614.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: spc:Sputcn32_3996 secretion protein HlyD YP_004436615.1 KEGG: kko:Kkor_1278 heavy metal efflux pump, CzcA family; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_004436616.1 KEGG: shw:Sputw3181_0353 hypothetical protein YP_004436617.1 KEGG: shw:Sputw3181_0354 hypothetical protein YP_004436618.1 KEGG: kko:Kkor_1281 hypothetical protein YP_004436619.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: svo:SVI_2278 TonB-dependent receptor YP_004436620.1 PFAM: transcriptional regulator domain-containing protein; WD40-like beta Propeller containing protein; KEGG: svo:SVI_2277 hypothetical protein YP_004436621.1 KEGG: sse:Ssed_2276 hypothetical protein YP_004436622.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: sse:Ssed_2277 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF YP_004436623.1 KEGG: rbi:RB2501_12237 hypothetical protein YP_004436624.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: pha:PSHAb0012 transcriptional activator of copper resistance (two-component regulatory system with CusS); SMART: response regulator receiver YP_004436625.1 KEGG: pha:PSHAb0011 copper resistance protein A (CPx-type copper ATPase); putative laccase; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2 YP_004436626.1 PFAM: copper resistance B precursor; KEGG: pha:PSHAb0010 copper resistance protein B [precursor] (CPx-type copper ATPase) YP_004436627.1 PFAM: copper resistance protein CopC; KEGG: pha:PSHAb0009 putative copper resistance (CopC-like) YP_004436628.1 KEGG: pha:PSHAb0008 putative copper export protein YP_004436629.1 KEGG: pha:PSHAb0007 putative orphan protein YP_004436630.1 PFAM: protein of unknown function DUF305; KEGG: sde:Sde_1942 hypothetical protein YP_004436631.1 PFAM: glutaredoxin; KEGG: amc:MADE_00406 hypothetical protein YP_004436632.1 KEGG: nph:NP3940A phosphoribosylaminoimidazole synthetase YP_004436633.1 KEGG: pat:Patl_2031 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_004436634.1 KEGG: pat:Patl_2030 biotin/lipoyl attachment YP_004436635.1 PFAM: outer membrane efflux protein; KEGG: pat:Patl_2029 outer membrane efflux protein YP_004436636.1 KEGG: pat:Patl_2028 hypothetical protein YP_004436637.1 KEGG: pat:Patl_2027 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein YP_004436638.1 KEGG: pat:Patl_2026 hypothetical protein YP_004436639.1 PFAM: cation efflux protein; KEGG: pat:Patl_2025 cation efflux protein YP_004436640.1 KEGG: pat:Patl_2024 MerR family transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004436641.1 PFAM: glycosyl transferase family 2; KEGG: amc:MADE_00384 glycosyl transferase, group 2 family protein YP_004436642.1 PFAM: SNARE associated Golgi protein; KEGG: amc:MADE_00383 hypothetical protein YP_004436643.1 PFAM: glycosyl transferase family 39; KEGG: amc:MADE_00382 glycosyl transferase, family 39 YP_004436644.1 PFAM: Rhodanese domain protein; KEGG: mxa:MXAN_5428 metallo-beta-lactamase family protein YP_004436645.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: amc:MADE_00083 protein of unknown function DUF395, YeeE/YedE YP_004436646.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: amc:MADE_00084 protein of unknown function DUF395, YeeE/YedE YP_004436647.1 KEGG: pha:PSHAb0161 putative sensory histidine kinase in two-component regulatory system; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein YP_004436648.1 KEGG: pha:PSHAb0162 DNA-binding response regulator of two-component system; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004436649.1 PFAM: Redoxin domain protein; KEGG: amc:MADE_00100 putative thiol:disulfide interchange protein YP_004436650.1 KEGG: pha:PSHAb0164 disulfide isomerase/thiol-disulfide oxidase YP_004436651.1 PFAM: acriflavin resistance protein; KEGG: mms:mma_0020 AcrB/AcrD/AcrF family multidrug efflux protein YP_004436652.1 PFAM: secretion protein HlyD family protein; KEGG: oca:OCAR_6322 secretion protein HlyD YP_004436653.1 PFAM: protein of unknown function DUF81; KEGG: amc:MADE_00086 hypothetical protein YP_004436654.1 KEGG: amc:MADE_00087 metallo-beta-lactamase family protein YP_004436655.1 PFAM: protein of unknown function DUF442; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amc:MADE_00088 uncharacterized NAD(FAD)-dependent dehydrogenase YP_004436656.1 KEGG: api:100169235 similar to conserved hypothetical protein YP_004436657.1 KEGG: ilo:IL1235 multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 3; multicopper oxidase type 1; multicopper oxidase type 2 YP_004436658.1 PFAM: copper resistance B precursor; KEGG: ilo:IL1234 hypothetical protein YP_004436659.1 PFAM: Ion transport 2 domain protein; KEGG: eli:ELI_04565 membrane protein related to Kef-type K+ transport systemNAD-binding component YP_004436660.1 PFAM: protein of unknown function DUF305; KEGG: sde:Sde_1942 hypothetical protein YP_004436661.1 PFAM: glutaredoxin; KEGG: amc:MADE_00406 hypothetical protein YP_004436662.1 KEGG: mmu:67222 serum response factor binding protein 1 YP_004436663.1 KEGG: ppu:PP_5401 hypothetical protein YP_004436664.1 KEGG: amc:MADE_00366 hypothetical protein YP_004436665.1 KEGG: amc:MADE_00360 hypothetical protein YP_004436666.1 KEGG: amc:MADE_00359 predicted protein-S-isoprenylcysteine methyltransferase YP_004436667.1 KEGG: sde:Sde_1936 hypothetical protein YP_004436668.1 KEGG: amc:MADE_00356 putative secreted protein containing plastocyanin domain YP_004436669.1 KEGG: amc:MADE_00355 cation transport ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase YP_004436670.1 KEGG: amc:MADE_00354 putative Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family) protein; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR YP_004436671.1 KEGG: amc:MADE_00353 hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_004436672.1 KEGG: amc:MADE_00352 hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase YP_004436673.1 KEGG: amc:MADE_00351 hydrogenase formation HypD protein; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein YP_004436674.1 KEGG: amc:MADE_00350 hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K YP_004436675.1 PFAM: hydrogenase expression/synthesis HypA; KEGG: amc:MADE_00349 hydrogenase expression/formation protein HypA YP_004436676.1 KEGG: amc:MADE_00348 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC) YP_004436677.1 KEGG: mav:MAV_2510 MmpL4 protein YP_004436678.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: amc:MADE_00347 Ni-Fe hydrogenase large chain YP_004436679.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: amc:MADE_00346 Ni-Fe hydrogenase, small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit YP_004436680.1 KEGG: amc:MADE_00345 HupH hydrogenase expression protein YP_004436681.1 KEGG: amc:MADE_00344 hydrogenase 2 maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein YP_004436682.1 KEGG: amc:MADE_00343 hypothetical protein YP_004436683.1 KEGG: amc:MADE_00342 putative exported protein of unknown function with cytochrome C family domain YP_004436684.1 KEGG: amc:MADE_00341 hypothetical protein YP_004436685.1 PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: amc:MADE_00340 putative NADH oxidoreductase; putative nitric oxide dioxygenase YP_004436686.1 KEGG: amc:MADE_00338 putative exported protein of unknown function YP_004436687.1 KEGG: amc:MADE_00337 hypothetical protein YP_004436688.1 KEGG: amc:MADE_00336 hypothetical protein YP_004436689.1 KEGG: kko:Kkor_1288 hypothetical protein YP_004436690.1 KEGG: kko:Kkor_1287 phosphate-selective porin O and P YP_004436691.1 KEGG: pop:POPTR_566230 hypothetical protein YP_004436692.1 PFAM: FAD linked oxidase domain protein; short-chain dehydrogenase/reductase SDR; KEGG: amc:MADE_00332 FAD linked oxidase, N-terminal YP_004436693.1 KEGG: amc:MADE_00330 hypothetical protein YP_004436694.1 PFAM: protein of unknown function DUF1624; KEGG: amc:MADE_00327 hypothetical protein YP_004436695.1 KEGG: amc:MADE_00326 L-asparaginase YP_004436696.1 KEGG: amc:MADE_00324 putative copper export protein YP_004436697.1 PFAM: copper resistance protein CopC; KEGG: shn:Shewana3_4289 copper resistance protein CopC YP_004436698.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KEGG: sse:Ssed_2277 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF YP_004436699.1 KEGG: slo:Shew_3463 PepSY-associated TM helix domain-containing protein YP_004436700.1 KEGG: amc:MADE_00320 cation efflux system protein CusA; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein YP_004436701.1 KEGG: amc:MADE_00319 putative cation efflux system protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein YP_004436702.1 PFAM: outer membrane efflux protein; KEGG: amc:MADE_00318 putative cation efflux protein YP_004436703.1 PFAM: protein of unknown function DUF411; KEGG: amc:MADE_00317 transcriptional regulator, MerR family protein YP_004436704.1 KEGG: bur:Bcep18194_B2767 hypothetical protein YP_004436705.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; KEGG: amc:MADE_00315 probable two component response regulator transcription regulator protein; SMART: response regulator receiver YP_004436706.1 SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; manually curated; KEGG: amc:MADE_00314 sensory histidine kinase in two-component region; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein YP_004436707.1 KEGG: cps:CPS_2714 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver YP_004436708.1 KEGG: amc:MADE_00386 putative sensor transduction kinase (copper resistance); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein YP_004436709.1 KEGG: eic:NT01EI_3837 transposase, mutator family YP_004436710.1 KEGG: vsa:VSAL_II1016 transposase YP_004436711.1 PFAM: IS66 Orf2 family protein; KEGG: pha:PSHAa0409 hypothetical protein YP_004436712.1 KEGG: xbo:XBJ1_1559 putative transposase YP_004436713.1 KEGG: amc:MADE_00134 hypothetical protein YP_004436714.1 KEGG: fjo:Fjoh_3046 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related YP_004436715.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: mmw:Mmwyl1_4448 lipid A phosphoethanolamine transferase YP_004436716.1 KEGG: kko:Kkor_1688 hypothetical protein YP_004436717.1 KEGG: cps:CPS_0927 hypothetical protein YP_004436718.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: cps:CPS_2717 putative sulfatase YP_004436719.1 PFAM: diacylglycerol kinase; KEGG: amc:MADE_00377 putative diacylglycerol kinase (DAGK) YP_004436720.1 PFAM: transposase IS3/IS911 family protein; KEGG: maq:Maqu_4024 transposase IS3/IS911 family protein YP_004436721.1 PFAM: sulfatase; KEGG: swd:Swoo_0154 sulfatase YP_004436722.1 PFAM: Integrase catalytic region; KEGG: pap:PSPA7_4229 hypothetical protein YP_004436723.1 KEGG: psp:PSPPH_3740 ISPsy24, transposase orfA; manually curated; PFAM: transposase IS3/IS911 family protein YP_004436724.1 KEGG: xne:XNC1_p0159 RepA protein YP_004436726.1 PFAM: helix-turn-helix domain protein; KEGG: amc:MADE_00080 hypothetical protein YP_004436727.1 PFAM: HipA domain protein; KEGG: amc:MADE_00079 amidophosphoribosyl transferase YP_004436728.1 PFAM: site-binding protein DNA replication region; KEGG: pha:PSHAb0560 DNA replication terminus site-binding protein YP_004436730.1 KEGG: noc:Noc_2135 hypothetical protein YP_004436731.1 KEGG: tbi:Tbis_3142 serine/threonine protein kinase YP_004436732.1 KEGG: mar:MAE_11100 hypothetical protein YP_004436733.1 KEGG: vfm:VFMJ11_B0032 hypothetical protein YP_004436734.1 KEGG: fma:FMG_0195 hypothetical protein YP_004436735.1 KEGG: nth:Nther_0908 protein of unknown function UPF0182 YP_004436737.1 KEGG: plu:plu2211 hypothetical protein YP_004436738.1 KEGG: fgr:FG03699.1 hypothetical protein YP_004436739.1 PFAM: UvrD/REP helicase; KEGG: maq:Maqu_3655 UvrD/REP helicase YP_004436740.1 KEGG: wsu:WS1161 hypothetical protein YP_004436741.1 KEGG: fgr:FG10106.1 hypothetical protein YP_004436742.1 KEGG: cho:Chro.60138 sporozoite antigen gp40/15 YP_004436743.1 KEGG: ana:alr7304 hypothetical protein; PFAM: Na-Ca exchanger/integrin-beta4; SMART: Na-Ca exchanger/integrin-beta4 YP_004436744.1 KEGG: mpd:MCP_2796 hypothetical protein; PFAM: Na-Ca exchanger/integrin-beta4; SMART: Na-Ca exchanger/integrin-beta4 YP_004436745.1 KEGG: tva:TVAG_032240 flocculin YP_004436746.1 KEGG: bam:Bamb_4575 hemagluttinin domain-containing protein YP_004436747.1 KEGG: edi:EDI_167520 hypothetical protein YP_004436748.1 KEGG: aci:ACIAD3314 pilin like competence factor YP_004436749.1 KEGG: vfi:VF_B0030 hypothetical protein YP_004436750.1 PFAM: type II secretion system protein E; KEGG: tye:THEYE_A2004 type IV-A pilus assembly ATPase PilB YP_004436751.1 KEGG: tca:658955 similar to LIM domain protein YP_004436752.1 KEGG: ddi:DDB_G0277283 hypothetical protein YP_004436753.1 KEGG: ypi:YpsIP31758_B0014 PilN family type IV pilus biogenesis protein YP_004436754.1 KEGG: mct:MCR_1628 hypothetical protein YP_004436755.1 KEGG: set:SEN1959 phage encoded recombination associated protein YP_004436756.1 KEGG: bfo:BRAFLDRAFT_114488 hypothetical protein YP_004436757.1 KEGG: ftf:FTF0610 DNA/RNA endonuclease family protein YP_004436758.1 KEGG: cho:Chro.20126 syntaxin YP_004436759.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sse:Ssed_0206 GGDEF domain-containing protein; SMART: GGDEF domain containing protein YP_004436760.1 KEGG: pmo:Pmob_0368 ABC transporter related YP_004436761.1 KEGG: lic:LIC10414 hypothetical protein YP_004436762.1 KEGG: pkn:PKH_061460 hypothetical protein YP_004436763.1 KEGG: gau:GAU_0041 hypothetical protein YP_004436764.1 TIGRFAM: putative DNA repair protein; KEGG: ttu:TERTU_0822 hypothetical protein YP_004436765.1 PFAM: acyltransferase 3; KEGG: gym:GYMC10_1289 acyltransferase 3 YP_004436766.1 KEGG: sai:Saci_1864 hypothetical protein YP_004436767.1 KEGG: oaa:100076053 similar to ATP-dependent RNA helicase DDX55 (DEAD box protein 55) YP_004436768.1 KEGG: tin:Tint_2256 hypothetical protein YP_004436769.1 PFAM: UvrD/REP helicase; KEGG: cbs:COXBURSA331_A1375 UvrD/REP helicase family protein YP_004436770.1 KEGG: cpr:CPR_2195 hypothetical protein YP_004436771.1 KEGG: hya:HY04AAS1_0042 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_004436772.1 KEGG: pcb:PC000724.04.0 hypothetical protein YP_004436773.1 KEGG: pha:PSHAb0002 putative transcriptional regulator for chromosome partitioning (ParB family protein) YP_004436774.1 KEGG: vex:VEA_000993 chromosome (plasmid) partitioning protein ParA YP_004436775.1 KEGG: kra:Krad_0749 GMP synthase YP_004436776.1 KEGG: pfs:pQBR0455 putative plasmid partitioning ParB-family protein; TIGRFAM: parB-like partition protein; SMART: ParB domain protein nuclease YP_004436777.1 KEGG: ddi:DDB_G0274213 U4/U6 small nuclear ribonucleoprotein YP_004436778.1 KEGG: mdo:100022360 similar to ligand-dependent corepressor YP_004436779.1 KEGG: ptm:GSPATT00033975001 hypothetical protein YP_004436780.1 KEGG: rso:RSc1659 hypothetical protein YP_004436781.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rpf:Rpic12D_5026 UBA/ThiF-type NAD/FAD binding protein YP_004436782.1 KEGG: gbe:GbCGDNIH1_0404 aconitate hydratase YP_004436783.1 KEGG: pmb:A9601_10481 hypothetical protein YP_004436784.1 KEGG: maq:Maqu_4235 hypothetical protein