-- dump date 20111121_012349 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 205914000001 SEQ_END SEQ_END NC_006298.1 5178 5178 DR NC_006298.1; contig end 5178..5178 Haemophilus somnus 129PT 205914000002 SEQ_END SEQ_END NC_008309.1 2007700 2007700 DR NC_008309.1; contig end 2007700..2007700 Haemophilus somnus 129PT YP_874357.1 CDS HS_p06 NC_006298.1 5079 107 R hypothetical protein complement(join(5079..5178,1..107)) Haemophilus somnus 129PT 3021849 YP_087174.1 CDS HS_p01 NC_006298.1 341 547 R hypothetical protein complement(341..547) Haemophilus somnus 129PT 3021847 YP_087175.1 CDS rep NC_006298.1 558 1529 R replication protein complement(558..1529) Haemophilus somnus 129PT 3021852 YP_087176.1 CDS rep NC_006298.1 3309 4280 D replication protein 3309..4280 Haemophilus somnus 129PT 3021850 YP_087177.1 CDS HS_p04 NC_006298.1 4327 4563 D hypothetical protein 4327..4563 Haemophilus somnus 129PT 3021848 YP_087178.1 CDS HS_p05 NC_006298.1 4798 5079 R hypothetical protein complement(4798..5079) Haemophilus somnus 129PT 3021851 YP_718205.1 CDS HS_1792 NC_008309.1 2006035 257 D hypothetical protein join(2006035..2007700,1..257) Haemophilus somnus 129PT 4239482 YP_718206.1 CDS HS_0001 NC_008309.1 384 1181 D integrase 384..1181 Haemophilus somnus 129PT 4239506 YP_718207.1 CDS pncB NC_008309.1 1927 3324 D nicotinate phosphoribosyltransferase 1927..3324 Haemophilus somnus 129PT 4239509 YP_718208.1 CDS gptA NC_008309.1 3401 3865 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(3401..3865) Haemophilus somnus 129PT 4239510 YP_718209.1 CDS pepD NC_008309.1 3990 5450 D M20C family Xaa-His dipeptidase 3990..5450 Haemophilus somnus 129PT 4239511 YP_718210.1 CDS mutS NC_008309.1 5598 8168 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(5598..8168) Haemophilus somnus 129PT 4239512 YP_718211.1 CDS aroE NC_008309.1 8310 9125 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(8310..9125) Haemophilus somnus 129PT 4239513 YP_718212.1 CDS HS_0007 NC_008309.1 9129 9707 R Sua5 family translation factor complement(9129..9707) Haemophilus somnus 129PT 4239514 YP_718213.1 CDS HS_0008 NC_008309.1 9677 10225 R DNA topoisomerase I-like protein complement(9677..10225) Haemophilus somnus 129PT 4239515 YP_718214.1 CDS HS_0009 NC_008309.1 10359 10922 D hypothetical protein 10359..10922 Haemophilus somnus 129PT 4239516 YP_718215.1 CDS HS_0010 NC_008309.1 10922 11347 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 10922..11347 Haemophilus somnus 129PT 4239517 YP_718216.1 CDS HS_0011 NC_008309.1 11348 12106 R sugar metabolism transcriptional regulator complement(11348..12106) Haemophilus somnus 129PT 4239518 YP_718217.1 CDS HS_0012 NC_008309.1 12277 13185 D 3-hydroxyisobutyrate dehydrogenase 12277..13185 Haemophilus somnus 129PT 4239519 YP_718218.1 CDS HS_0013 NC_008309.1 13187 14428 D secretion system component 13187..14428 Haemophilus somnus 129PT 4239520 YP_718219.1 CDS fucA NC_008309.1 14425 15057 D aldolase 14425..15057 Haemophilus somnus 129PT 4239521 YP_718220.1 CDS HS_0015 NC_008309.1 15060 15836 D hydroxypyruvate isomerase 15060..15836 Haemophilus somnus 129PT 4239522 YP_718221.1 CDS HS_0016 NC_008309.1 15963 16910 D hypothetical protein 15963..16910 Haemophilus somnus 129PT 4239523 YP_718222.1 CDS gntP NC_008309.1 16926 18398 D GntP family permease 16926..18398 Haemophilus somnus 129PT 4239524 YP_718223.1 CDS HS_0017a NC_008309.1 18540 18716 R hypothetical protein complement(18540..18716) Haemophilus somnus 129PT 4239525 YP_718224.1 CDS HS_0018 NC_008309.1 19007 20050 D hypothetical protein 19007..20050 Haemophilus somnus 129PT 4239526 YP_718225.1 CDS HS_0019 NC_008309.1 20037 21212 D major facilitator superfamily permease 20037..21212 Haemophilus somnus 129PT 4239527 YP_718226.1 CDS uxuR NC_008309.1 21510 22280 R GntR family transcriptional regulator complement(21510..22280) Haemophilus somnus 129PT 4239528 YP_718227.1 CDS HS_0021 NC_008309.1 22388 23446 D Zn-binding dehydrogenase 22388..23446 Haemophilus somnus 129PT 4239529 YP_718228.1 CDS HS_0022 NC_008309.1 23475 24458 D dicarboxylate-binding protein 23475..24458 Haemophilus somnus 129PT 4239530 YP_718229.1 CDS HS_0023 NC_008309.1 24523 25002 D permease 24523..25002 Haemophilus somnus 129PT 4239531 YP_718230.1 CDS HS_0024 NC_008309.1 24999 26273 D permease 24999..26273 Haemophilus somnus 129PT 4239532 YP_718231.1 CDS HS_0025 NC_008309.1 26460 27107 D allophanate hydrolase subunit 1 26460..27107 Haemophilus somnus 129PT 4239533 YP_718232.1 CDS HS_0026 NC_008309.1 27104 28033 D allophanate hydrolase subunit 2 27104..28033 Haemophilus somnus 129PT 4239534 YP_718233.1 CDS HS_0027 NC_008309.1 28020 28763 D LamB/YcsF family protein 28020..28763 Haemophilus somnus 129PT 4239535 YP_718234.1 CDS HS_0028 NC_008309.1 28889 30076 D permease 28889..30076 Haemophilus somnus 129PT 4239536 YP_718235.1 CDS araC NC_008309.1 30320 31048 D positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 30320..31048 Haemophilus somnus 129PT 4239537 YP_718236.1 CDS HS_0030 NC_008309.1 31236 32210 D sugar ABC transporter sugar-binding protein 31236..32210 Haemophilus somnus 129PT 4239538 YP_718237.1 CDS HS_0031 NC_008309.1 32278 33753 D sugar ABC transporter ATP-binding 32278..33753 Haemophilus somnus 129PT 4239539 YP_718238.1 CDS HS_0032 NC_008309.1 33722 34696 D sugar ABC transporter permease 33722..34696 Haemophilus somnus 129PT 4239540 YP_718239.1 CDS HS_0033 NC_008309.1 34699 35649 D sugar ABC transporter permease 34699..35649 Haemophilus somnus 129PT 4239541 YP_718240.1 CDS HS_0034 NC_008309.1 35662 37254 D sugar kinase 35662..37254 Haemophilus somnus 129PT 4239542 YP_718241.1 CDS HS_0035 NC_008309.1 37376 38092 R peroxiredoxin complement(37376..38092) Haemophilus somnus 129PT 4239543 YP_718242.1 CDS oxyR NC_008309.1 38221 39135 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 38221..39135 Haemophilus somnus 129PT 4239544 YP_718243.1 CDS mscL NC_008309.1 39262 39657 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(39262..39657) Haemophilus somnus 129PT 4239545 YP_718244.1 CDS trkA NC_008309.1 39742 41118 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(39742..41118) Haemophilus somnus 129PT 4239546 YP_718245.1 CDS rsmB NC_008309.1 41203 42591 R ribosomal RNA small subunit methyltransferase B complement(41203..42591) Haemophilus somnus 129PT 4239547 YP_718246.1 CDS fmt NC_008309.1 42588 43541 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(42588..43541) Haemophilus somnus 129PT 4239548 YP_718247.1 CDS def NC_008309.1 43616 44128 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(43616..44128) Haemophilus somnus 129PT 4239549 YP_718248.1 CDS narP NC_008309.1 44316 44945 R nitrate/nitrite response regulator protein complement(44316..44945) Haemophilus somnus 129PT 4239550 YP_718249.1 CDS cyaA NC_008309.1 44960 47470 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(44960..47470) Haemophilus somnus 129PT 4239551 YP_718250.1 CDS hemC NC_008309.1 47625 48590 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 47625..48590 Haemophilus somnus 129PT 4239552 YP_718251.1 CDS hemD NC_008309.1 48677 49345 D uroporphyrinogen-III synthase 48677..49345 Haemophilus somnus 129PT 4239553 YP_718252.1 CDS hemX NC_008309.1 49546 50745 D uroporphyrin-III C-methyltransferase 49546..50745 Haemophilus somnus 129PT 4239554 YP_718253.1 CDS hemY NC_008309.1 50760 52037 D porphyrin biosynthesis protein 50760..52037 Haemophilus somnus 129PT 4239555 YP_718254.1 CDS dusA NC_008309.1 52092 53078 R tRNA-dihydrouridine synthase A complement(52092..53078) Haemophilus somnus 129PT 4239556 YP_718255.1 CDS HS_0049 NC_008309.1 53491 55044 R autoinducer-2 (AI-2) kinase complement(53491..55044) Haemophilus somnus 129PT 4239557 YP_718256.1 CDS HS_0050 NC_008309.1 55098 56057 R sorbitol operon transcriptional regulator complement(55098..56057) Haemophilus somnus 129PT 4239558 YP_718257.1 CDS ego NC_008309.1 56274 57782 D ABC transporter ATP-binding, sugar transport 56274..57782 Haemophilus somnus 129PT 4239559 YP_718258.1 CDS HS_0052 NC_008309.1 57791 58789 D sugar ABC transporter permease 57791..58789 Haemophilus somnus 129PT 4239560 YP_718259.1 CDS HS_0053 NC_008309.1 58786 59769 D sugar ABC transporter permease 58786..59769 Haemophilus somnus 129PT 4239561 YP_718260.1 CDS HS_0054 NC_008309.1 59882 60901 D sugar ABC transporter solute-binding protein 59882..60901 Haemophilus somnus 129PT 4239562 YP_718261.1 CDS HS_0055 NC_008309.1 60920 61798 D aldolase 60920..61798 Haemophilus somnus 129PT 4239563 YP_718262.1 CDS HS_0056 NC_008309.1 61864 62166 D autoinducer-2 (AI-2) modifying protein LsrG 61864..62166 Haemophilus somnus 129PT 4239564 YP_718263.1 CDS rpe NC_008309.1 62159 62869 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 62159..62869 Haemophilus somnus 129PT 4239565 YP_718264.1 CDS rpsJ NC_008309.1 63132 63443 D SSU ribosomal protein S10P 63132..63443 Haemophilus somnus 129PT 4239566 YP_718265.1 CDS rplC NC_008309.1 63460 64086 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 63460..64086 Haemophilus somnus 129PT 4239567 YP_718266.1 CDS rplD NC_008309.1 64102 64704 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 64102..64704 Haemophilus somnus 129PT 4239568 YP_718267.1 CDS rplW NC_008309.1 64701 65006 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 64701..65006 Haemophilus somnus 129PT 4239569 YP_718268.1 CDS rplB NC_008309.1 65027 65848 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 65027..65848 Haemophilus somnus 129PT 4239570 YP_718269.1 CDS rpsS NC_008309.1 65875 66150 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 65875..66150 Haemophilus somnus 129PT 4239571 YP_718270.1 CDS rplV NC_008309.1 66161 66493 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 66161..66493 Haemophilus somnus 129PT 4239572 YP_718271.1 CDS rpsC NC_008309.1 66510 67217 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 66510..67217 Haemophilus somnus 129PT 4239573 YP_718272.1 CDS rplP NC_008309.1 67231 67641 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 67231..67641 Haemophilus somnus 129PT 4239574 YP_718273.1 CDS rpmC NC_008309.1 67641 67832 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 67641..67832 Haemophilus somnus 129PT 4239575 YP_718274.1 CDS rpsQ NC_008309.1 67832 68086 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 67832..68086 Haemophilus somnus 129PT 4239576 YP_718275.1 CDS irp NC_008309.1 68283 70889 D iron-regulated outer membrane protein 68283..70889 Haemophilus somnus 129PT 4239577 YP_718276.1 CDS rplN NC_008309.1 71086 71457 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 71086..71457 Haemophilus somnus 129PT 4239578 YP_718277.1 CDS rplX NC_008309.1 71470 71781 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 71470..71781 Haemophilus somnus 129PT 4239579 YP_718278.1 CDS rplE NC_008309.1 71799 72338 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 71799..72338 Haemophilus somnus 129PT 4239580 YP_718279.1 CDS rpsN NC_008309.1 72350 72655 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 72350..72655 Haemophilus somnus 129PT 4239581 YP_718280.1 CDS rpsH NC_008309.1 72692 73084 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 72692..73084 Haemophilus somnus 129PT 4239582 YP_718281.1 CDS rplF NC_008309.1 73101 73634 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 73101..73634 Haemophilus somnus 129PT 4239583 YP_718282.1 CDS rplR NC_008309.1 73648 74001 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 73648..74001 Haemophilus somnus 129PT 4239584 YP_718283.1 CDS rpsE NC_008309.1 74017 74517 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 74017..74517 Haemophilus somnus 129PT 4239585 YP_718284.1 CDS rpmD NC_008309.1 74521 74703 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 74521..74703 Haemophilus somnus 129PT 4239586 YP_718285.1 CDS rplO NC_008309.1 74708 75142 D late assembly protein; 50S ribosomal protein L15 74708..75142 Haemophilus somnus 129PT 4239587 YP_718286.1 CDS secY NC_008309.1 75150 76475 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 75150..76475 Haemophilus somnus 129PT 4239588 YP_718287.1 CDS rpmJ NC_008309.1 76503 76616 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 76503..76616 Haemophilus somnus 129PT 4239589 YP_718288.1 CDS rpsM NC_008309.1 76760 77116 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 76760..77116 Haemophilus somnus 129PT 4239590 YP_718289.1 CDS rpsK NC_008309.1 77132 77521 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 77132..77521 Haemophilus somnus 129PT 4239591 YP_718290.1 CDS rpsD NC_008309.1 77551 78171 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 77551..78171 Haemophilus somnus 129PT 4239592 YP_718291.1 CDS rpoA NC_008309.1 78204 79193 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 78204..79193 Haemophilus somnus 129PT 4239593 YP_718292.1 CDS rplQ NC_008309.1 79235 79621 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 79235..79621 Haemophilus somnus 129PT 4239594 YP_718293.1 CDS HS_0086 NC_008309.1 79692 80378 R hypothetical protein complement(79692..80378) Haemophilus somnus 129PT 4239595 YP_718294.1 CDS nadR NC_008309.1 80383 81660 R catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase complement(80383..81660) Haemophilus somnus 129PT 4239596 YP_718295.1 CDS HS_0088 NC_008309.1 81736 82026 R hypothetical protein complement(81736..82026) Haemophilus somnus 129PT 4239597 YP_718296.1 CDS ribB NC_008309.1 82323 82961 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 82323..82961 Haemophilus somnus 129PT 4239598 YP_718297.1 CDS thiE NC_008309.1 83118 83783 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(83118..83783) Haemophilus somnus 129PT 4239599 YP_718298.1 CDS thiD NC_008309.1 83783 84595 R catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase complement(83783..84595) Haemophilus somnus 129PT 4239600 YP_718299.1 CDS thiM NC_008309.1 84588 85388 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(84588..85388) Haemophilus somnus 129PT 4239601 YP_718300.1 CDS recO NC_008309.1 85961 86569 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 85961..86569 Haemophilus somnus 129PT 4239602 YP_718301.1 CDS rumA NC_008309.1 86590 87909 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 86590..87909 Haemophilus somnus 129PT 4239603 YP_718302.1 CDS relA NC_008309.1 87921 90158 D GTP diphosphokinase 87921..90158 Haemophilus somnus 129PT 4239604 YP_718303.1 CDS dgkA NC_008309.1 90183 90539 D diacylglycerol kinase 90183..90539 Haemophilus somnus 129PT 4239605 YP_718304.1 CDS HS_0099 NC_008309.1 92709 92966 D hypothetical protein 92709..92966 Haemophilus somnus 129PT 4239607 YP_718305.1 CDS HS_0100 NC_008309.1 93052 93987 D transcriptional regulator 93052..93987 Haemophilus somnus 129PT 4239608 YP_718306.1 CDS HS_0101 NC_008309.1 94032 94934 D hypothetical protein 94032..94934 Haemophilus somnus 129PT 4239609 YP_718307.1 CDS HS_0103 NC_008309.1 95537 95761 D hypothetical protein 95537..95761 Haemophilus somnus 129PT 4239611 YP_718308.1 CDS HS_0104 NC_008309.1 95721 96155 D hypothetical protein 95721..96155 Haemophilus somnus 129PT 4239612 YP_718309.1 CDS fabF NC_008309.1 96182 97399 D 3-oxoacyl-[acyl-carrier-protein] synthase 96182..97399 Haemophilus somnus 129PT 4239613 YP_718310.1 CDS HS_0106 NC_008309.1 97401 97853 D dehydratase 97401..97853 Haemophilus somnus 129PT 4239614 YP_718311.1 CDS fabG NC_008309.1 97853 98581 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 97853..98581 Haemophilus somnus 129PT 4239615 YP_718312.1 CDS fab NC_008309.1 98654 99892 D 3-oxoacyl-[acyl-carrier-protein] synthase II 98654..99892 Haemophilus somnus 129PT 4239616 YP_718313.1 CDS HS_0109 NC_008309.1 100060 100812 D hypothetical protein 100060..100812 Haemophilus somnus 129PT 4239617 YP_718314.1 CDS plsC NC_008309.1 100788 101549 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 100788..101549 Haemophilus somnus 129PT 4239618 YP_718315.1 CDS acp NC_008309.1 101553 101810 D acyl carrier protein 101553..101810 Haemophilus somnus 129PT 4239619 YP_718316.1 CDS acp NC_008309.1 101826 102074 D acyl carrier protein 101826..102074 Haemophilus somnus 129PT 4239620 YP_718317.1 CDS HS_0113 NC_008309.1 102135 102515 D 3-hydroxymyristoyl/3-hydroxydecanoyl-[acyl- carrier-protein] dehydratase 102135..102515 Haemophilus somnus 129PT 4239621 YP_718318.1 CDS HS_0114 NC_008309.1 102625 103059 D hypothetical protein 102625..103059 Haemophilus somnus 129PT 4239622 YP_718319.1 CDS HS_0115 NC_008309.1 103052 104335 D acyl-coenzyme A synthetase-like protein 103052..104335 Haemophilus somnus 129PT 4239623 YP_718320.1 CDS HS_0116 NC_008309.1 104332 105060 D glycosyl transferase, group 2 family protein 104332..105060 Haemophilus somnus 129PT 4239624 YP_718321.1 CDS HS_0117 NC_008309.1 105057 105977 D acyltransferase 105057..105977 Haemophilus somnus 129PT 4239625 YP_718322.1 CDS HS_0118 NC_008309.1 105959 106426 D hypothetical protein 105959..106426 Haemophilus somnus 129PT 4239626 YP_718323.1 CDS HS_0119 NC_008309.1 106506 106949 D thioesterase 106506..106949 Haemophilus somnus 129PT 4239627 YP_718324.1 CDS HS_0120 NC_008309.1 106960 107547 D hypothetical protein 106960..107547 Haemophilus somnus 129PT 4239628 YP_718325.1 CDS HS_0121 NC_008309.1 107556 109847 D hypothetical protein 107556..109847 Haemophilus somnus 129PT 4239629 YP_718326.1 CDS serA NC_008309.1 109988 111220 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(109988..111220) Haemophilus somnus 129PT 4239630 YP_718327.1 CDS rpiA NC_008309.1 111246 111905 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(111246..111905) Haemophilus somnus 129PT 4239631 YP_718328.1 CDS HS_0124 NC_008309.1 112001 113179 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(112001..113179) Haemophilus somnus 129PT 4239632 YP_718329.1 CDS HS_0125 NC_008309.1 113179 113775 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(113179..113775) Haemophilus somnus 129PT 4239633 YP_718330.1 CDS comEA NC_008309.1 113965 114300 R competenc protein ComE complement(113965..114300) Haemophilus somnus 129PT 4239634 YP_718331.1 CDS HS_0127 NC_008309.1 114522 114911 R translation initiation inhibitor complement(114522..114911) Haemophilus somnus 129PT 4239635 YP_718332.1 CDS HS_0128 NC_008309.1 114972 115553 R hypothetical protein complement(114972..115553) Haemophilus somnus 129PT 4239636 YP_718333.1 CDS pabB NC_008309.1 115702 116709 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I complement(115702..116709) Haemophilus somnus 129PT 4239637 YP_718334.1 CDS trpG NC_008309.1 116766 117335 D catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis; anthranilate synthase component II 116766..117335 Haemophilus somnus 129PT 4239638 YP_718335.1 CDS HS_0131 NC_008309.1 117488 117967 D Dps family protein; DNA-binding stress protein 117488..117967 Haemophilus somnus 129PT 4239639 YP_718336.1 CDS trmE NC_008309.1 118067 119425 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(118067..119425) Haemophilus somnus 129PT 4239640 YP_718337.1 CDS oxaA NC_008309.1 119511 121136 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(119511..121136) Haemophilus somnus 129PT 4239641 YP_718338.1 CDS HS_0134 NC_008309.1 121136 121396 R hypothetical protein complement(121136..121396) Haemophilus somnus 129PT 4239642 YP_718339.1 CDS rnpA NC_008309.1 121360 121719 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(121360..121719) Haemophilus somnus 129PT 4239643 YP_718340.1 CDS rpmH NC_008309.1 121734 121868 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(121734..121868) Haemophilus somnus 129PT 4239644 YP_718341.1 CDS dnaA NC_008309.1 122211 123569 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 122211..123569 Haemophilus somnus 129PT 4239645 YP_718342.1 CDS dnaN NC_008309.1 123581 124681 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 123581..124681 Haemophilus somnus 129PT 4239646 YP_718343.1 CDS recF NC_008309.1 124685 125761 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 124685..125761 Haemophilus somnus 129PT 4239647 YP_718344.1 CDS crp NC_008309.1 125818 126462 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(125818..126462) Haemophilus somnus 129PT 4239648 YP_718345.1 CDS HS_0140 NC_008309.1 126475 126714 R hypothetical protein complement(126475..126714) Haemophilus somnus 129PT 4239649 YP_718346.1 CDS slmA NC_008309.1 126734 127393 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(126734..127393) Haemophilus somnus 129PT 4239650 YP_718347.1 CDS dut NC_008309.1 127393 127848 R dUTPase or desoxyuridine 5'-triphosphate nucleotidohydrolase; catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(127393..127848) Haemophilus somnus 129PT 4239651 YP_718348.1 CDS coaBC NC_008309.1 127845 129071 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(127845..129071) Haemophilus somnus 129PT 4239652 YP_718349.1 CDS radC NC_008309.1 129244 129912 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 129244..129912 Haemophilus somnus 129PT 4239653 YP_718350.1 CDS rpmB NC_008309.1 130133 130369 D required for 70S ribosome assembly; 50S ribosomal protein L28 130133..130369 Haemophilus somnus 129PT 4239654 YP_718351.1 CDS rpmG NC_008309.1 130381 130551 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 130381..130551 Haemophilus somnus 129PT 4239655 YP_718352.1 CDS mutM NC_008309.1 130656 131468 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 130656..131468 Haemophilus somnus 129PT 4239656 YP_718353.1 CDS ilvG NC_008309.1 131560 133236 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 131560..133236 Haemophilus somnus 129PT 4239657 YP_718354.1 CDS ilvM NC_008309.1 133240 133458 D acetolactate synthase 2 regulatory subunit 133240..133458 Haemophilus somnus 129PT 4239658 YP_718355.1 CDS HS_0149 NC_008309.1 133524 134186 D hypothetical protein 133524..134186 Haemophilus somnus 129PT 4239659 YP_718356.1 CDS ubiC NC_008309.1 134303 134806 D chorismate lyase 134303..134806 Haemophilus somnus 129PT 4239660 YP_718357.1 CDS rnr NC_008309.1 134810 137224 D exoribonuclease II 134810..137224 Haemophilus somnus 129PT 4239661 YP_718358.1 CDS HS_0152 NC_008309.1 137231 137968 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 137231..137968 Haemophilus somnus 129PT 4239662 YP_718359.1 CDS HS_0153 NC_008309.1 138109 138654 R TPR repeat-containing protein complement(138109..138654) Haemophilus somnus 129PT 4239663 YP_718360.1 CDS cysE NC_008309.1 138698 139495 R catalyzes the O-acetylation of serine; serine acetyltransferase complement(138698..139495) Haemophilus somnus 129PT 4239664 YP_718361.1 CDS gpsA NC_008309.1 139497 140513 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(139497..140513) Haemophilus somnus 129PT 4239665 YP_718362.1 CDS secB NC_008309.1 140580 141095 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(140580..141095) Haemophilus somnus 129PT 4239666 YP_718363.1 CDS HS_0157 NC_008309.1 141106 141552 R hypothetical protein complement(141106..141552) Haemophilus somnus 129PT 4239667 YP_718364.1 CDS dcuB NC_008309.1 141796 143106 D functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 141796..143106 Haemophilus somnus 129PT 4239668 YP_718365.1 CDS ubiA NC_008309.1 143179 144039 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(143179..144039) Haemophilus somnus 129PT 4239669 YP_718366.1 CDS glpE NC_008309.1 144024 144500 D thiosulfate sulfurtransferase 144024..144500 Haemophilus somnus 129PT 4239670 YP_718367.1 CDS HS_0161 NC_008309.1 144524 144862 R hypothetical protein complement(144524..144862) Haemophilus somnus 129PT 4239671 YP_718368.1 CDS glpG NC_008309.1 144882 145751 D rhomboid family GlpG protein 144882..145751 Haemophilus somnus 129PT 4239672 YP_718369.1 CDS HS_0163 NC_008309.1 145978 146502 D hypothetical protein 145978..146502 Haemophilus somnus 129PT 4239673 YP_718370.1 CDS rpmF NC_008309.1 146520 146690 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 146520..146690 Haemophilus somnus 129PT 4239674 YP_718371.1 CDS plsX NC_008309.1 146757 147089 D fatty acid/phospholipid synthesis protein 146757..147089 Haemophilus somnus 129PT 4239675 YP_718372.1 CDS fabH NC_008309.1 147142 148092 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 147142..148092 Haemophilus somnus 129PT 4239676 YP_718373.1 CDS fabD NC_008309.1 148136 149074 D [Acyl-carrier-protein] S-malonyltransferase 148136..149074 Haemophilus somnus 129PT 4239677 YP_718374.1 CDS fabG NC_008309.1 149128 149853 D catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 149128..149853 Haemophilus somnus 129PT 4239678 YP_718375.1 CDS acpP NC_008309.1 150107 150337 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 150107..150337 Haemophilus somnus 129PT 4239679 YP_718376.1 CDS rplK NC_008309.1 150486 150914 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 150486..150914 Haemophilus somnus 129PT 4239680 YP_718377.1 CDS rplA NC_008309.1 150919 151608 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 150919..151608 Haemophilus somnus 129PT 4239681 YP_718378.1 CDS rplJ NC_008309.1 151892 152383 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 151892..152383 Haemophilus somnus 129PT 4239682 YP_718379.1 CDS rplL NC_008309.1 152435 152803 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 152435..152803 Haemophilus somnus 129PT 4239683 YP_718380.1 CDS rho NC_008309.1 153043 154242 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(153043..154242) Haemophilus somnus 129PT 4239684 YP_718381.1 CDS rhlB NC_008309.1 154500 155759 D enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 154500..155759 Haemophilus somnus 129PT 4239685 YP_718382.1 CDS rpe NC_008309.1 155873 156559 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 155873..156559 Haemophilus somnus 129PT 4239686 YP_718383.1 CDS gph NC_008309.1 156556 157230 D catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 156556..157230 Haemophilus somnus 129PT 4239687 YP_718384.1 CDS trpS NC_008309.1 157240 158241 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 157240..158241 Haemophilus somnus 129PT 4239688 YP_718385.1 CDS HS_0178 NC_008309.1 158460 158900 R hypothetical protein complement(158460..158900) Haemophilus somnus 129PT 4239689 YP_718386.1 CDS HS_0179 NC_008309.1 158953 159555 D phosphatase 158953..159555 Haemophilus somnus 129PT 4239690 YP_718387.1 CDS HS_0180 NC_008309.1 159556 159843 R hypothetical protein complement(159556..159843) Haemophilus somnus 129PT 4239691 YP_718388.1 CDS HS_0181 NC_008309.1 159934 162681 R TonB-dependent outer membrane receptor complement(159934..162681) Haemophilus somnus 129PT 4239692 YP_718389.1 CDS HS_0182 NC_008309.1 162913 163530 R hypothetical protein complement(162913..163530) Haemophilus somnus 129PT 4239693 YP_718390.1 CDS ilvA NC_008309.1 163772 165307 D threonine dehydratase; threonine deaminase; threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 163772..165307 Haemophilus somnus 129PT 4239694 YP_718391.1 CDS ispH NC_008309.1 165383 166315 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(165383..166315) Haemophilus somnus 129PT 4239695 YP_718392.1 CDS lspA NC_008309.1 166327 166824 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(166327..166824) Haemophilus somnus 129PT 4239696 YP_718393.1 CDS ileS NC_008309.1 166899 169712 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(166899..169712) Haemophilus somnus 129PT 4239697 YP_718394.1 CDS HS_0187 NC_008309.1 169731 170279 R hypothetical protein complement(169731..170279) Haemophilus somnus 129PT 4239698 YP_718395.1 CDS ribF NC_008309.1 170377 171321 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(170377..171321) Haemophilus somnus 129PT 4239699 YP_718396.1 CDS folA NC_008309.1 171407 171892 R dihydrofolate reductase complement(171407..171892) Haemophilus somnus 129PT 4239700 YP_718397.1 CDS HS_0190 NC_008309.1 171945 172424 R hypothetical protein complement(171945..172424) Haemophilus somnus 129PT 4239701 YP_718398.1 CDS HS_0191 NC_008309.1 172412 173200 R hypothetical protein complement(172412..173200) Haemophilus somnus 129PT 4239702 YP_718399.1 CDS proB NC_008309.1 173358 174470 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 173358..174470 Haemophilus somnus 129PT 4239703 YP_718400.1 CDS nusG NC_008309.1 174631 175185 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(174631..175185) Haemophilus somnus 129PT 4239704 YP_718401.1 CDS secE NC_008309.1 175187 175594 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(175187..175594) Haemophilus somnus 129PT 4239705 YP_718402.1 CDS tufA NC_008309.1 175770 176954 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(175770..176954) Haemophilus somnus 129PT 4239706 YP_718403.1 CDS coaA NC_008309.1 177659 178612 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 177659..178612 Haemophilus somnus 129PT 4239711 YP_718404.1 CDS gltS NC_008309.1 178666 179874 R sodium/glutamate symporter complement(178666..179874) Haemophilus somnus 129PT 4239712 YP_718405.1 CDS dnaE NC_008309.1 180055 183531 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(180055..183531) Haemophilus somnus 129PT 4239713 YP_718406.1 CDS clpB NC_008309.1 183692 186262 R ATP-dependent Clp protease subunit B complement(183692..186262) Haemophilus somnus 129PT 4239714 YP_718407.1 CDS HS_0200 NC_008309.1 186446 186907 R hypothetical protein complement(186446..186907) Haemophilus somnus 129PT 4239715 YP_718408.1 CDS oadG NC_008309.1 187091 187348 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 187091..187348 Haemophilus somnus 129PT 4239716 YP_718409.1 CDS oadA NC_008309.1 187361 189160 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 187361..189160 Haemophilus somnus 129PT 4239717 YP_718410.1 CDS oadB NC_008309.1 189212 190477 D oxaloacetate decarboxylase subunit beta 189212..190477 Haemophilus somnus 129PT 4239718 YP_718411.1 CDS tal NC_008309.1 190550 191503 R transaldolase B complement(190550..191503) Haemophilus somnus 129PT 4239719 YP_718412.1 CDS imp NC_008309.1 191691 194036 D determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 191691..194036 Haemophilus somnus 129PT 4239720 YP_718413.1 CDS fba NC_008309.1 194113 195192 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(194113..195192) Haemophilus somnus 129PT 4239721 YP_718414.1 CDS pgk NC_008309.1 195284 196438 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(195284..196438) Haemophilus somnus 129PT 4239722 YP_718415.1 CDS fdx NC_008309.1 196692 196952 D ferredoxin 196692..196952 Haemophilus somnus 129PT 4239723 YP_718416.1 CDS hsf NC_008309.1 197001 212432 R large adhesin complement(197001..212432) Haemophilus somnus 129PT 4239724 YP_718417.1 CDS HS_0210 NC_008309.1 212868 213617 R polar amino acid ABC transporter ATP-binding protein complement(212868..213617) Haemophilus somnus 129PT 4239725 YP_718418.1 CDS HS_0211 NC_008309.1 213631 214347 R amino acid ABC transporter permease complement(213631..214347) Haemophilus somnus 129PT 4239726 YP_718419.1 CDS HS_0212 NC_008309.1 214337 215119 R amino acid ABC transporter substrate-binding complement(214337..215119) Haemophilus somnus 129PT 4239727 YP_718420.1 CDS HS_0213 NC_008309.1 215433 215996 R hypothetical protein complement(215433..215996) Haemophilus somnus 129PT 4239728 YP_718421.1 CDS HS_0214 NC_008309.1 216015 216398 R hypothetical protein complement(216015..216398) Haemophilus somnus 129PT 4239729 YP_718422.1 CDS HS_0215 NC_008309.1 216401 216868 R hypothetical protein complement(216401..216868) Haemophilus somnus 129PT 4239730 YP_718423.1 CDS mloA NC_008309.1 217020 218141 R hypothetical protein complement(217020..218141) Haemophilus somnus 129PT 4239731 YP_718424.1 CDS HS_0217 NC_008309.1 218189 218512 R hypothetical protein complement(218189..218512) Haemophilus somnus 129PT 4239732 YP_718425.1 CDS HS_0218 NC_008309.1 219081 219368 D hypothetical protein 219081..219368 Haemophilus somnus 129PT 4239733 YP_718426.1 CDS HS_0219 NC_008309.1 219532 220920 R NadC family transporter complement(219532..220920) Haemophilus somnus 129PT 4239734 YP_718427.1 CDS rraA NC_008309.1 221104 221604 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(221104..221604) Haemophilus somnus 129PT 4239735 YP_718428.1 CDS menA NC_008309.1 221651 222565 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(221651..222565) Haemophilus somnus 129PT 4239736 YP_718429.1 CDS HS_0222 NC_008309.1 222663 223385 D hypothetical protein 222663..223385 Haemophilus somnus 129PT 4239737 YP_718430.1 CDS rbsD NC_008309.1 223545 223964 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 223545..223964 Haemophilus somnus 129PT 4239738 YP_718431.1 CDS HS_0224 NC_008309.1 224095 224280 D transposase 224095..224280 Haemophilus somnus 129PT 4239739 YP_718432.1 CDS HS_0224a NC_008309.1 224451 224690 D transposase 224451..224690 Haemophilus somnus 129PT 4239740 YP_718433.1 CDS rbsK NC_008309.1 224788 225741 D catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 224788..225741 Haemophilus somnus 129PT 4239741 YP_718434.1 CDS rbsR NC_008309.1 225762 226772 D LacI family transcription regulator 225762..226772 Haemophilus somnus 129PT 4239742 YP_718435.1 CDS smpA NC_008309.1 226801 227187 R small protein A complement(226801..227187) Haemophilus somnus 129PT 4239743 YP_718436.1 CDS ndpA NC_008309.1 227282 228295 R nucleoid-associated protein NdpA complement(227282..228295) Haemophilus somnus 129PT 4239744 YP_718437.1 CDS HS_0229 NC_008309.1 228413 228634 D hypothetical protein 228413..228634 Haemophilus somnus 129PT 4239745 YP_718438.1 CDS HS_0230 NC_008309.1 228636 230378 D hypothetical protein 228636..230378 Haemophilus somnus 129PT 4239746 YP_718439.1 CDS sfsA NC_008309.1 230592 231308 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(230592..231308) Haemophilus somnus 129PT 4239747 YP_718440.1 CDS pntA NC_008309.1 231517 233049 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 231517..233049 Haemophilus somnus 129PT 4239748 YP_718441.1 CDS pntB NC_008309.1 233062 234522 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 233062..234522 Haemophilus somnus 129PT 4239749 YP_718442.1 CDS HS_0234 NC_008309.1 234603 236252 D phosphoglycerol transferase 234603..236252 Haemophilus somnus 129PT 4239750 YP_718443.1 CDS galK NC_008309.1 236311 236580 D galactokinase 236311..236580 Haemophilus somnus 129PT 4239751 YP_718444.1 CDS galM NC_008309.1 236574 237617 D catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 236574..237617 Haemophilus somnus 129PT 4239752 YP_718445.1 CDS corC NC_008309.1 237772 238665 D possible hemolysin-related protein; magnesium and cobalt efflux protein 237772..238665 Haemophilus somnus 129PT 4239753 YP_718446.1 CDS lnt NC_008309.1 238662 240194 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 238662..240194 Haemophilus somnus 129PT 4239754 YP_718447.1 CDS HS_0239 NC_008309.1 240202 240933 R TatD family deoxyribonuclease complement(240202..240933) Haemophilus somnus 129PT 4239755 YP_718448.1 CDS HS_0240 NC_008309.1 241113 241613 D hypothetical protein 241113..241613 Haemophilus somnus 129PT 4239756 YP_718449.1 CDS ppiB NC_008309.1 241185 241694 R peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase) complement(241185..241694) Haemophilus somnus 129PT 4239757 YP_718450.1 CDS cysS NC_008309.1 241833 243212 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 241833..243212 Haemophilus somnus 129PT 4239758 YP_718451.1 CDS HS_0243 NC_008309.1 243264 243995 R hypothetical protein complement(243264..243995) Haemophilus somnus 129PT 4239759 YP_718452.1 CDS ispB NC_008309.1 244128 245108 R octaprenyl-diphosphate synthase complement(244128..245108) Haemophilus somnus 129PT 4239760 YP_718453.1 CDS rplU NC_008309.1 245340 245651 D 50S ribosomal protein L21 245340..245651 Haemophilus somnus 129PT 4239761 YP_718454.1 CDS rpmA NC_008309.1 245672 245929 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 245672..245929 Haemophilus somnus 129PT 4239762 YP_718455.1 CDS HS_0247 NC_008309.1 246065 246985 D hypothetical protein 246065..246985 Haemophilus somnus 129PT 4239763 YP_718456.1 CDS obgE NC_008309.1 246995 248173 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 246995..248173 Haemophilus somnus 129PT 4239764 YP_718457.1 CDS ampD NC_008309.1 248415 248984 R N-acetyl-anhydromuranmyl-L-alanine amidase complement(248415..248984) Haemophilus somnus 129PT 4239765 YP_718458.1 CDS pilA NC_008309.1 249107 249565 D fimbrial subunit 249107..249565 Haemophilus somnus 129PT 4239766 YP_718459.1 CDS artP NC_008309.1 249639 250448 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 249639..250448 Haemophilus somnus 129PT 4239767 YP_718460.1 CDS artI NC_008309.1 250466 251191 D arginine ABC transporter substrate-binding protein 250466..251191 Haemophilus somnus 129PT 4239768 YP_718461.1 CDS artQ NC_008309.1 251196 251867 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 251196..251867 Haemophilus somnus 129PT 4239769 YP_718462.1 CDS artM NC_008309.1 251878 252561 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 251878..252561 Haemophilus somnus 129PT 4239770 YP_718463.1 CDS HS_0255 NC_008309.1 252667 252954 R hypothetical protein complement(252667..252954) Haemophilus somnus 129PT 4239771 YP_718464.1 CDS cydA NC_008309.1 253414 254979 D cytochrome D ubiquinol oxidase subunit I 253414..254979 Haemophilus somnus 129PT 4239772 YP_718465.1 CDS cydB NC_008309.1 254994 256130 D cytochrome D ubiquinol oxidase subunit II 254994..256130 Haemophilus somnus 129PT 4239773 YP_718466.1 CDS HS_0258 NC_008309.1 256504 256929 D thioesterase 256504..256929 Haemophilus somnus 129PT 4239774 YP_718467.1 CDS tolQ NC_008309.1 256926 257609 D biopolymer transport protein 256926..257609 Haemophilus somnus 129PT 4239775 YP_718468.1 CDS tolR NC_008309.1 257677 258099 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 257677..258099 Haemophilus somnus 129PT 4239776 YP_718469.1 CDS tolA NC_008309.1 258118 259173 D inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 258118..259173 Haemophilus somnus 129PT 4239459 YP_718470.1 CDS tolB NC_008309.1 259201 260505 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 259201..260505 Haemophilus somnus 129PT 4239460 YP_718471.1 CDS pal NC_008309.1 260563 260970 D peptidoglycan-associated outer membrane lipoprotein (outer membrane protein P6) 260563..260970 Haemophilus somnus 129PT 4239461 YP_718472.1 CDS pulG NC_008309.1 261644 262171 D type II secretory pathway, pseudopilin 261644..262171 Haemophilus somnus 129PT 4239465 YP_718473.1 CDS HS_0265 NC_008309.1 262220 262897 D hypothetical protein 262220..262897 Haemophilus somnus 129PT 4239466 YP_718474.1 CDS HS_0266 NC_008309.1 262900 263580 D hypothetical protein 262900..263580 Haemophilus somnus 129PT 4239467 YP_718475.1 CDS HS_0267 NC_008309.1 263561 263878 D hypothetical protein 263561..263878 Haemophilus somnus 129PT 4239468 YP_718476.1 CDS recC NC_008309.1 263931 267365 D DNA helicase/exodeoxyribonuclease V subunit gamma 263931..267365 Haemophilus somnus 129PT 4239469 YP_718477.1 CDS ruvA NC_008309.1 267444 268058 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 267444..268058 Haemophilus somnus 129PT 4239470 YP_718478.1 CDS ruvB NC_008309.1 268069 269076 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 268069..269076 Haemophilus somnus 129PT 4239471 YP_718479.1 CDS HS_0271 NC_008309.1 269211 270416 R hypothetical protein complement(269211..270416) Haemophilus somnus 129PT 4239472 YP_718480.1 CDS HS_0272 NC_008309.1 270419 271384 R S-adenosylmethionine-dependent methyltransferase complement(270419..271384) Haemophilus somnus 129PT 4239473 YP_718481.1 CDS putP NC_008309.1 271387 272901 R sodium/proline symporter complement(271387..272901) Haemophilus somnus 129PT 4239474 YP_718482.1 CDS rng NC_008309.1 273032 274507 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 273032..274507 Haemophilus somnus 129PT 4239475 YP_718483.1 CDS HS_0275 NC_008309.1 274562 275341 D glycosyltransferase 274562..275341 Haemophilus somnus 129PT 4239476 YP_718484.1 CDS tldD NC_008309.1 275479 276927 D microcin-processing peptidase 2 275479..276927 Haemophilus somnus 129PT 4239477 YP_718485.1 CDS HS_0277 NC_008309.1 277139 278587 D SAM-dependent methyltransferase 277139..278587 Haemophilus somnus 129PT 4239478 YP_718486.1 CDS suhB NC_008309.1 278668 279474 R inositol-1(or 4)-monophosphatase complement(278668..279474) Haemophilus somnus 129PT 4239479 YP_718487.1 CDS HS_0279 NC_008309.1 279646 280386 D tRNA/rRNA methyltransferase 279646..280386 Haemophilus somnus 129PT 4239480 YP_718488.1 CDS HS_0280 NC_008309.1 280440 280847 D BadM/Rrf2 family transcriptional regulator 280440..280847 Haemophilus somnus 129PT 4239481 YP_718489.1 CDS nifS NC_008309.1 280926 282140 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 280926..282140 Haemophilus somnus 129PT 4239483 YP_718490.1 CDS iscU NC_008309.1 282216 282599 D scaffold protein 282216..282599 Haemophilus somnus 129PT 4239484 YP_718491.1 CDS HS_0283 NC_008309.1 282765 283088 D HesB-family protein 282765..283088 Haemophilus somnus 129PT 4239485 YP_718492.1 CDS hscB NC_008309.1 283097 283615 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 283097..283615 Haemophilus somnus 129PT 4239486 YP_718493.1 CDS hscA NC_008309.1 283657 285507 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 283657..285507 Haemophilus somnus 129PT 4239487 YP_718494.1 CDS fdx NC_008309.1 285519 285860 D ferredoxin 285519..285860 Haemophilus somnus 129PT 4239488 YP_718495.1 CDS gshA NC_008309.1 285995 288268 D Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 285995..288268 Haemophilus somnus 129PT 4239489 YP_718496.1 CDS deoD NC_008309.1 288437 289153 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(288437..289153) Haemophilus somnus 129PT 4239490 YP_718497.1 CDS HS_0289 NC_008309.1 289282 290541 R transport system permease complement(289282..290541) Haemophilus somnus 129PT 4239491 YP_718498.1 CDS HS_0290 NC_008309.1 290717 291352 D hypothetical protein 290717..291352 Haemophilus somnus 129PT 4239492 YP_718499.1 CDS lgtF NC_008309.1 291438 292208 D UDP-glucose--lipooligosaccharide beta 1-4 glucosyltransferase 291438..292208 Haemophilus somnus 129PT 4239493 YP_718500.1 CDS HS_0292 NC_008309.1 292198 293244 D glycosyltransferase 292198..293244 Haemophilus somnus 129PT 4239494 YP_718501.1 CDS rpsP NC_008309.1 293372 293620 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 293372..293620 Haemophilus somnus 129PT 4239495 YP_718502.1 CDS rimM NC_008309.1 293647 294174 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 293647..294174 Haemophilus somnus 129PT 4239496 YP_718503.1 CDS trmD NC_008309.1 294228 294965 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 294228..294965 Haemophilus somnus 129PT 4239497 YP_718504.1 CDS rplS NC_008309.1 295001 295351 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 295001..295351 Haemophilus somnus 129PT 4239498 YP_718505.1 CDS HS_0297 NC_008309.1 295486 296304 R hydrolase complement(295486..296304) Haemophilus somnus 129PT 4239499 YP_718506.1 CDS gntR NC_008309.1 296341 297342 R gluconate utilization operon repressor complement(296341..297342) Haemophilus somnus 129PT 4239500 YP_718507.1 CDS HS_0299 NC_008309.1 297351 298445 R tRNA/rRNA methyltransferase complement(297351..298445) Haemophilus somnus 129PT 4239501 YP_718508.1 CDS pssA NC_008309.1 298569 299936 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 298569..299936 Haemophilus somnus 129PT 4239502 YP_718509.1 CDS dnaQ NC_008309.1 299966 300676 R DNA polymerase III, epsilon subunit complement(299966..300676) Haemophilus somnus 129PT 4239503 YP_718510.1 CDS HS_0302 NC_008309.1 300673 302619 R signal-transduction protein complement(300673..302619) Haemophilus somnus 129PT 4239504 YP_718511.1 CDS iolC NC_008309.1 302655 304565 R myo-inositol catabolism protein complement(302655..304565) Haemophilus somnus 129PT 4239505 YP_718512.1 CDS HS_0304 NC_008309.1 304808 305650 D transcriptional regulator 304808..305650 Haemophilus somnus 129PT 4239777 YP_718513.1 CDS HS_0305 NC_008309.1 305687 306451 R SAM-dependent methyltransferase complement(305687..306451) Haemophilus somnus 129PT 4239778 YP_718514.1 CDS trmA NC_008309.1 306427 307626 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(306427..307626) Haemophilus somnus 129PT 4239779 YP_718515.1 CDS HS_0307 NC_008309.1 307592 307921 R hypothetical protein complement(307592..307921) Haemophilus somnus 129PT 4239780 YP_718516.1 CDS dsbA NC_008309.1 307975 308583 R protein disulfide-isomerase complement(307975..308583) Haemophilus somnus 129PT 4239781 YP_718517.1 CDS HS_0309 NC_008309.1 308593 308859 R hypothetical protein complement(308593..308859) Haemophilus somnus 129PT 4239782 YP_718518.1 CDS mobA NC_008309.1 308926 309513 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 308926..309513 Haemophilus somnus 129PT 4239783 YP_718519.1 CDS HS_0311 NC_008309.1 309632 311638 D possible oligopeptide transporter; integral membrane protein 309632..311638 Haemophilus somnus 129PT 4239784 YP_718520.1 CDS HS_0312 NC_008309.1 311761 312432 R TPR repeat-containing protein complement(311761..312432) Haemophilus somnus 129PT 4239785 YP_718521.1 CDS HS_0313 NC_008309.1 312490 313248 R TPR repeat-containing protein complement(312490..313248) Haemophilus somnus 129PT 4239786 YP_718522.1 CDS HS_0314 NC_008309.1 313269 313532 R hypothetical protein complement(313269..313532) Haemophilus somnus 129PT 4239787 YP_718523.1 CDS lipA NC_008309.1 313770 314714 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(313770..314714) Haemophilus somnus 129PT 4239788 YP_718524.1 CDS lipB NC_008309.1 314750 315406 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(314750..315406) Haemophilus somnus 129PT 4239789 YP_718525.1 CDS HS_0317 NC_008309.1 315415 315711 R hypothetical protein complement(315415..315711) Haemophilus somnus 129PT 4239790 YP_718526.1 CDS dacA NC_008309.1 315766 316932 R serine-type D-Ala-D-Ala carboxypeptidase; penicillin-binding protein complement(315766..316932) Haemophilus somnus 129PT 4239791 YP_718527.1 CDS rlpA NC_008309.1 317042 317602 R rare lipoprotein A complement(317042..317602) Haemophilus somnus 129PT 4239792 YP_718528.1 CDS mrdB NC_008309.1 317645 318760 R rod shape-determining protein complement(317645..318760) Haemophilus somnus 129PT 4239793 YP_718529.1 CDS mrdA NC_008309.1 318760 320673 R peptidoglycan glycosyltransferase complement(318760..320673) Haemophilus somnus 129PT 4239794 YP_718530.1 CDS HS_0322 NC_008309.1 320690 321157 R SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(320690..321157) Haemophilus somnus 129PT 4239795 YP_718531.1 CDS HS_0323 NC_008309.1 321161 321481 R hypothetical protein complement(321161..321481) Haemophilus somnus 129PT 4239796 YP_718532.1 CDS HS_0324 NC_008309.1 321635 322288 R IS1016C2 transposase complement(321635..322288) Haemophilus somnus 129PT 4239797 YP_718533.1 CDS yfeD NC_008309.1 322555 323397 R chelated iron ABC transporter permease complement(322555..323397) Haemophilus somnus 129PT 4239798 YP_718534.1 CDS yfeC NC_008309.1 323390 324280 R chelated iron ABC transporter permease complement(323390..324280) Haemophilus somnus 129PT 4239799 YP_718535.1 CDS yfeB NC_008309.1 324285 325043 R iron ABC transporter ATP-binding protein complement(324285..325043) Haemophilus somnus 129PT 4239800 YP_718536.1 CDS yfeA NC_008309.1 325053 325913 R chelated iron ABC transporter periplasmic-binding protein complement(325053..325913) Haemophilus somnus 129PT 4239801 YP_718537.1 CDS HS_0329 NC_008309.1 326040 326369 R sulfite reductase-like protein complement(326040..326369) Haemophilus somnus 129PT 4239802 YP_718538.1 CDS HS_0330 NC_008309.1 326447 327109 R integral membrane protein complement(326447..327109) Haemophilus somnus 129PT 4239803 YP_718539.1 CDS comM NC_008309.1 327531 329060 R competence-like protein complement(327531..329060) Haemophilus somnus 129PT 4239805 YP_718540.1 CDS engB NC_008309.1 329162 329857 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(329162..329857) Haemophilus somnus 129PT 4239806 YP_718541.1 CDS glmU NC_008309.1 329778 331139 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(329778..331139) Haemophilus somnus 129PT 4239807 YP_718542.1 CDS anmK NC_008309.1 331242 332363 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 331242..332363 Haemophilus somnus 129PT 4239808 YP_718543.1 CDS murQ NC_008309.1 332366 333277 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 332366..333277 Haemophilus somnus 129PT 4239809 YP_718544.1 CDS kefF NC_008309.1 333498 334103 D NAD(P)H dehydrogenase (quinone) 333498..334103 Haemophilus somnus 129PT 4239810 YP_718545.1 CDS HS_0337 NC_008309.1 334320 335087 D hypothetical protein 334320..335087 Haemophilus somnus 129PT 4239811 YP_718546.1 CDS HS_0338 NC_008309.1 335169 336857 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK complement(335169..336857) Haemophilus somnus 129PT 4239812 YP_718547.1 CDS HS_0339 NC_008309.1 337178 338944 D outer membrane protein 337178..338944 Haemophilus somnus 129PT 4239813 YP_718548.1 CDS HS_0340 NC_008309.1 338955 342479 D hypothetical protein 338955..342479 Haemophilus somnus 129PT 4239814 YP_718549.1 CDS ppx NC_008309.1 342482 344032 D exopolyphosphatase 342482..344032 Haemophilus somnus 129PT 4239815 YP_718550.1 CDS ilvD NC_008309.1 344205 346040 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 344205..346040 Haemophilus somnus 129PT 4239816 YP_718551.1 CDS HS_0342a NC_008309.1 346369 346554 R hypothetical protein complement(346369..346554) Haemophilus somnus 129PT 4239817 YP_718552.1 CDS chaA NC_008309.1 347041 348198 D calcium/proton antiporter 347041..348198 Haemophilus somnus 129PT 4239818 YP_718553.1 CDS HS_0344 NC_008309.1 348297 349274 D hypothetical protein 348297..349274 Haemophilus somnus 129PT 4239819 YP_718554.1 CDS HS_0345 NC_008309.1 349291 350403 D PhoH-like ATP-binding protein 349291..350403 Haemophilus somnus 129PT 4239820 YP_718555.1 CDS HS_0346 NC_008309.1 350425 350889 D metal-dependent hydrolase 350425..350889 Haemophilus somnus 129PT 4239821 YP_718556.1 CDS HS_0347 NC_008309.1 350879 352831 D acetyltransferase 350879..352831 Haemophilus somnus 129PT 4239822 YP_718557.1 CDS HS_0347a NC_008309.1 352864 353037 D hypothetical protein 352864..353037 Haemophilus somnus 129PT 4239823 YP_718558.1 CDS cstA NC_008309.1 353182 354765 D carbon starvation protein A 353182..354765 Haemophilus somnus 129PT 4239824 YP_718559.1 CDS mraZ NC_008309.1 354994 355452 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 354994..355452 Haemophilus somnus 129PT 4239825 YP_718560.1 CDS mraW NC_008309.1 355570 356529 D S-adenosyl-methyltransferase MraW 355570..356529 Haemophilus somnus 129PT 4239826 YP_718561.1 CDS ftsL NC_008309.1 356529 356849 D cell division protein 356529..356849 Haemophilus somnus 129PT 4239827 YP_718562.1 CDS ftsI NC_008309.1 356874 358673 D peptidoglycan synthetase FtsI 356874..358673 Haemophilus somnus 129PT 4239828 YP_718563.1 CDS murE NC_008309.1 358689 360176 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 358689..360176 Haemophilus somnus 129PT 4239829 YP_718564.1 CDS murF NC_008309.1 360257 361651 D UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 360257..361651 Haemophilus somnus 129PT 4239830 YP_718565.1 CDS mraY NC_008309.1 361645 362730 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 361645..362730 Haemophilus somnus 129PT 4239831 YP_718566.1 CDS murD NC_008309.1 362739 364049 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 362739..364049 Haemophilus somnus 129PT 4239832 YP_718567.1 CDS ftsW NC_008309.1 364063 365247 D cell division protein 364063..365247 Haemophilus somnus 129PT 4239833 YP_718568.1 CDS murG NC_008309.1 365263 366336 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 365263..366336 Haemophilus somnus 129PT 4239834 YP_718569.1 CDS murC NC_008309.1 366390 367820 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 366390..367820 Haemophilus somnus 129PT 4239835 YP_718570.1 CDS ddl NC_008309.1 367865 368791 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 367865..368791 Haemophilus somnus 129PT 4239836 YP_718571.1 CDS ftsQ NC_008309.1 368792 369565 D cell division protein 368792..369565 Haemophilus somnus 129PT 4239837 YP_718572.1 CDS fstA NC_008309.1 369596 370870 D cell division protein FtsA 369596..370870 Haemophilus somnus 129PT 4239838 YP_718573.1 CDS ftsZ NC_008309.1 371056 372171 D hydrolyzes GTP; cell division protein FtsZ 371056..372171 Haemophilus somnus 129PT 4239839 YP_718574.1 CDS lpxC NC_008309.1 372212 373129 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 372212..373129 Haemophilus somnus 129PT 4239840 YP_718575.1 CDS pheA NC_008309.1 373254 374411 D chorismate mutase / prephenate dehydratase 373254..374411 Haemophilus somnus 129PT 4239841 YP_718576.1 CDS comL NC_008309.1 374473 375261 R DNA uptake lipoprotein complement(374473..375261) Haemophilus somnus 129PT 4239842 YP_718577.1 CDS rluD NC_008309.1 375371 376336 D responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 375371..376336 Haemophilus somnus 129PT 4239843 YP_718578.1 CDS HS_0368 NC_008309.1 376338 377078 D hypothetical protein 376338..377078 Haemophilus somnus 129PT 4239844 YP_718579.1 CDS cysK NC_008309.1 377132 378082 R cysteine synthase complement(377132..378082) Haemophilus somnus 129PT 4239845 YP_718580.1 CDS cysZ NC_008309.1 378200 378973 R role in sulfur assimilation; sulfate transport protein CysZ complement(378200..378973) Haemophilus somnus 129PT 4239846 YP_718581.1 CDS zipA NC_008309.1 379133 380140 D interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 379133..380140 Haemophilus somnus 129PT 4239847 YP_718582.1 CDS HS_0372 NC_008309.1 380653 382323 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 380653..382323 Haemophilus somnus 129PT 4239848 YP_718583.1 CDS HS_0373 NC_008309.1 382622 382969 D hypothetical protein 382622..382969 Haemophilus somnus 129PT 4239849 YP_718584.1 CDS HS_0374 NC_008309.1 383108 383317 D hypothetical protein 383108..383317 Haemophilus somnus 129PT 4239850 YP_718585.1 CDS ktrA NC_008309.1 383505 384167 D potassium uptake protein; K+ transporter 383505..384167 Haemophilus somnus 129PT 4239851 YP_718586.1 CDS ktrB NC_008309.1 384157 385476 D potassium uptake protein; cation transport protein 384157..385476 Haemophilus somnus 129PT 4239852 YP_718587.1 CDS ligA NC_008309.1 385592 387613 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(385592..387613) Haemophilus somnus 129PT 4239853 YP_718588.1 CDS gntP NC_008309.1 387723 389057 R gluconate permease complement(387723..389057) Haemophilus somnus 129PT 4239854 YP_718589.1 CDS glk NC_008309.1 389391 389909 D gluconate kinase 389391..389909 Haemophilus somnus 129PT 4239855 YP_718590.1 CDS HS_0380 NC_008309.1 390391 391419 D periplasmic-binding protein 390391..391419 Haemophilus somnus 129PT 4239856 YP_718591.1 CDS HS_0381 NC_008309.1 391450 391914 D hypothetical protein 391450..391914 Haemophilus somnus 129PT 4239857 YP_718592.1 CDS HS_0382 NC_008309.1 391907 393883 D integral membrane protein 391907..393883 Haemophilus somnus 129PT 4239858 YP_718593.1 CDS HS_0383 NC_008309.1 394115 406831 R large adhesin complement(394115..406831) Haemophilus somnus 129PT 4239859 YP_718594.1 CDS prfC NC_008309.1 407469 409049 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 407469..409049 Haemophilus somnus 129PT 4239860 YP_718595.1 CDS plsB NC_008309.1 409166 411601 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(409166..411601) Haemophilus somnus 129PT 4239861 YP_718596.1 CDS lexA NC_008309.1 411763 412395 D Represses a number of genes involved in the response to DNA damage; LexA repressor 411763..412395 Haemophilus somnus 129PT 4239862 YP_718597.1 CDS ndk NC_008309.1 412482 412907 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(412482..412907) Haemophilus somnus 129PT 4239863 YP_718598.1 CDS pepB NC_008309.1 412919 414217 R catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B complement(412919..414217) Haemophilus somnus 129PT 4239864 YP_718599.1 CDS leuD NC_008309.1 414327 414929 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(414327..414929) Haemophilus somnus 129PT 4239865 YP_718600.1 CDS leuC NC_008309.1 414939 416348 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(414939..416348) Haemophilus somnus 129PT 4239866 YP_718601.1 CDS leuB NC_008309.1 416449 417525 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(416449..417525) Haemophilus somnus 129PT 4239867 YP_718602.1 CDS leuA NC_008309.1 417549 419102 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(417549..419102) Haemophilus somnus 129PT 4239868 YP_718603.1 CDS ccmA NC_008309.1 419699 420352 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 419699..420352 Haemophilus somnus 129PT 4239869 YP_718604.1 CDS ccmB NC_008309.1 420349 421014 D heme ABC transporter permease 420349..421014 Haemophilus somnus 129PT 4239870 YP_718605.1 CDS ccmC NC_008309.1 421064 421795 D heme ABC transporter permease 421064..421795 Haemophilus somnus 129PT 4239871 YP_718606.1 CDS ccmD NC_008309.1 421805 422017 D heme ABC transporter substrate-binding protein 421805..422017 Haemophilus somnus 129PT 4239872 YP_718607.1 CDS ccmE NC_008309.1 422014 422538 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 422014..422538 Haemophilus somnus 129PT 4239873 YP_718608.1 CDS ccmF NC_008309.1 422535 424484 D cytochrome c-type biogenesis protein F 422535..424484 Haemophilus somnus 129PT 4239874 YP_718609.1 CDS dsbE NC_008309.1 424488 425033 D thiol:disulfide interchange protein; cytochrome c-type biogenesis protein G 424488..425033 Haemophilus somnus 129PT 4239875 YP_718610.1 CDS ccmH NC_008309.1 425030 425500 D cytochrome c-type biogenesis protein H 425030..425500 Haemophilus somnus 129PT 4239876 YP_718611.1 CDS HS_0401 NC_008309.1 425504 426388 D TPR repeat-containing cytochrome c-type biogenesis protein 425504..426388 Haemophilus somnus 129PT 4239877 YP_718612.1 CDS arcB NC_008309.1 426401 428257 D sensor histidine kinase 426401..428257 Haemophilus somnus 129PT 4239878 YP_718613.1 CDS HS_0403 NC_008309.1 428344 429300 D hypothetical protein 428344..429300 Haemophilus somnus 129PT 4239879 YP_718614.1 CDS ispG NC_008309.1 429307 430413 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 429307..430413 Haemophilus somnus 129PT 4239880 YP_718615.1 CDS hisS NC_008309.1 430426 431703 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 430426..431703 Haemophilus somnus 129PT 4239881 YP_718616.1 CDS HS_0406 NC_008309.1 431714 432325 D hypothetical protein 431714..432325 Haemophilus somnus 129PT 4239882 YP_718617.1 CDS attK NC_008309.1 432401 433828 D succinate semialdehyde dehydrogenase 432401..433828 Haemophilus somnus 129PT 4239883 YP_718618.1 CDS proA NC_008309.1 433984 435240 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(433984..435240) Haemophilus somnus 129PT 4239884 YP_718619.1 CDS HS_0409 NC_008309.1 435250 435921 R hypothetical protein complement(435250..435921) Haemophilus somnus 129PT 4239885 YP_718620.1 CDS tdk NC_008309.1 436082 436669 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(436082..436669) Haemophilus somnus 129PT 4239886 YP_718621.1 CDS gcp NC_008309.1 436731 437759 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(436731..437759) Haemophilus somnus 129PT 4239887 YP_718622.1 CDS dprA NC_008309.1 437995 439101 D DNA processing chain A 437995..439101 Haemophilus somnus 129PT 4239888 YP_718623.1 CDS HS_0413 NC_008309.1 439084 439686 R methylase complement(439084..439686) Haemophilus somnus 129PT 4239889 YP_718624.1 CDS ftsY NC_008309.1 439750 441093 D signal recognition particle-docking protein FtsY 439750..441093 Haemophilus somnus 129PT 4239890 YP_718625.1 CDS mviN NC_008309.1 441256 442812 R virulence factor complement(441256..442812) Haemophilus somnus 129PT 4239891 YP_718626.1 CDS rpsT NC_008309.1 443105 443368 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 443105..443368 Haemophilus somnus 129PT 4239892 YP_718627.1 CDS typA NC_008309.1 443430 445280 R elongation factor; GTP-binding protein complement(443430..445280) Haemophilus somnus 129PT 4239893 YP_718628.1 CDS glnA NC_008309.1 445523 446941 D L-glutamine synthetase 445523..446941 Haemophilus somnus 129PT 4239894 YP_718629.1 CDS birA NC_008309.1 447166 448098 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(447166..448098) Haemophilus somnus 129PT 4239895 YP_718630.1 CDS guaB NC_008309.1 448262 449725 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 448262..449725 Haemophilus somnus 129PT 4239896 YP_718631.1 CDS guaA NC_008309.1 449845 451416 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 449845..451416 Haemophilus somnus 129PT 4239897 YP_718632.1 CDS HS_0422 NC_008309.1 451591 452031 R transcriptional regulator complement(451591..452031) Haemophilus somnus 129PT 4239898 YP_718633.1 CDS HS_0423 NC_008309.1 452273 452509 D hypothetical protein 452273..452509 Haemophilus somnus 129PT 4239899 YP_718634.1 CDS HS_0424 NC_008309.1 452512 453636 D phage integrase 452512..453636 Haemophilus somnus 129PT 4239900 YP_718635.1 CDS HS_0425 NC_008309.1 453626 453988 D hypothetical protein 453626..453988 Haemophilus somnus 129PT 4239901 YP_718636.1 CDS HS_0426 NC_008309.1 454096 455007 D phage DNA-polymerase or DNA-primase 454096..455007 Haemophilus somnus 129PT 4239902 YP_718637.1 CDS virE NC_008309.1 454967 456397 D virulence-associated protein E 454967..456397 Haemophilus somnus 129PT 4239903 YP_718638.1 CDS HS_0428 NC_008309.1 456719 457060 D hypothetical protein 456719..457060 Haemophilus somnus 129PT 4239904 YP_718639.1 CDS HS_0429 NC_008309.1 457204 457629 D hypothetical protein 457204..457629 Haemophilus somnus 129PT 4239905 YP_718640.1 CDS bcgIA NC_008309.1 457622 459592 D bifunctional; restriction enzyme subunit alpha 457622..459592 Haemophilus somnus 129PT 4239906 YP_718641.1 CDS bcgIB NC_008309.1 459573 460649 D restriction enzyme subunit beta 459573..460649 Haemophilus somnus 129PT 4239907 YP_718642.1 CDS bcgIB NC_008309.1 460618 461151 D restriction enzyme subunit beta 460618..461151 Haemophilus somnus 129PT 4239908 YP_718643.1 CDS HS_0433 NC_008309.1 461158 462090 D hypothetical protein 461158..462090 Haemophilus somnus 129PT 4239909 YP_718644.1 CDS alfA NC_008309.1 463494 464132 D alpha-L-fucosidase 463494..464132 Haemophilus somnus 129PT 4239911 YP_718645.1 CDS HS_0436 NC_008309.1 464154 464462 D Haemophilus-specific protein; hypothetical protein 464154..464462 Haemophilus somnus 129PT 4239912 YP_718646.1 CDS HS_0437 NC_008309.1 464465 465805 D protein-N(pi)-phosphohistidine-sugar phosphotransferase; PTS system, cellobiose-specific IIC component 464465..465805 Haemophilus somnus 129PT 4239913 YP_718647.1 CDS rusA NC_008309.1 465880 466239 D ribosomal small subunit pseudouridine synthase A 465880..466239 Haemophilus somnus 129PT 4239914 YP_718648.1 CDS HS_0439 NC_008309.1 466559 466792 D hypothetical protein 466559..466792 Haemophilus somnus 129PT 4239915 YP_718649.1 CDS HS_0440 NC_008309.1 466802 467053 D hypothetical protein 466802..467053 Haemophilus somnus 129PT 4239916 YP_718650.1 CDS HS_0441 NC_008309.1 467055 468053 D cell filamentation-like protein 467055..468053 Haemophilus somnus 129PT 4239917 YP_718651.1 CDS HS_0442 NC_008309.1 468080 468301 R resolvase/integrase-like protein complement(468080..468301) Haemophilus somnus 129PT 4239918 YP_718652.1 CDS HS_0443 NC_008309.1 468440 469108 D ParA-like protein 468440..469108 Haemophilus somnus 129PT 4239919 YP_718653.1 CDS HS_0444 NC_008309.1 469110 469553 D hypothetical protein 469110..469553 Haemophilus somnus 129PT 4239920 YP_718654.1 CDS HS_0445 NC_008309.1 469567 470145 R resolvase/integrase-like protein complement(469567..470145) Haemophilus somnus 129PT 4239921 YP_718655.1 CDS HS_0446 NC_008309.1 470536 471993 D hypothetical protein 470536..471993 Haemophilus somnus 129PT 4239922 YP_718656.1 CDS HS_0447 NC_008309.1 472432 472653 R hypothetical protein complement(472432..472653) Haemophilus somnus 129PT 4239923 YP_718657.1 CDS HS_0447a NC_008309.1 472874 473056 R hypothetical protein complement(472874..473056) Haemophilus somnus 129PT 4239924 YP_718658.1 CDS tbpB NC_008309.1 473089 475053 D transferrin-binding protein 473089..475053 Haemophilus somnus 129PT 4239925 YP_718659.1 CDS tbpA NC_008309.1 475187 478165 D transferrin-binding protein A 475187..478165 Haemophilus somnus 129PT 4239926 YP_718660.1 CDS htpG NC_008309.1 478475 480355 D molecular chaperone; heat shock protein 90 478475..480355 Haemophilus somnus 129PT 4239927 YP_718661.1 CDS HS_0451 NC_008309.1 481084 482853 D hypothetical protein 481084..482853 Haemophilus somnus 129PT 4239928 YP_718662.1 CDS HS_0452 NC_008309.1 482850 483539 D hypothetical protein 482850..483539 Haemophilus somnus 129PT 4239929 YP_718663.1 CDS HS_0453 NC_008309.1 483539 484348 D hypothetical protein 483539..484348 Haemophilus somnus 129PT 4239930 YP_718664.1 CDS HS_0454 NC_008309.1 485040 485282 D hypothetical protein 485040..485282 Haemophilus somnus 129PT 4239931 YP_718665.1 CDS HS_0455 NC_008309.1 485279 486055 D 4'-phosphopantetheinyl transferase 485279..486055 Haemophilus somnus 129PT 4239932 YP_718666.1 CDS gltX NC_008309.1 486393 487835 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(486393..487835) Haemophilus somnus 129PT 4239934 YP_718667.1 CDS pilC NC_008309.1 488524 489744 D type IV pilus assembly protein; protein transport protein 488524..489744 Haemophilus somnus 129PT 4239938 YP_718668.1 CDS pilD NC_008309.1 489741 490448 D prepilin peptidase 489741..490448 Haemophilus somnus 129PT 4239939 YP_718669.1 CDS coaE NC_008309.1 490468 491115 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 490468..491115 Haemophilus somnus 129PT 4239940 YP_718670.1 CDS HS_0460 NC_008309.1 491112 491306 D hypothetical protein 491112..491306 Haemophilus somnus 129PT 4239941 YP_718671.1 CDS HS_0460a NC_008309.1 491479 491640 D hypothetical protein 491479..491640 Haemophilus somnus 129PT 4239942 YP_718672.1 CDS HS_0461 NC_008309.1 491711 493087 D D-alanine glycine permease 491711..493087 Haemophilus somnus 129PT 4239943 YP_718673.1 CDS HS_0462 NC_008309.1 493323 493640 D sigma 54 modulation protein / SSU ribosomal protein S30P 493323..493640 Haemophilus somnus 129PT 4239944 YP_718674.1 CDS hpt NC_008309.1 493844 494383 D hypoxanthine phosphoribosyltransferase 493844..494383 Haemophilus somnus 129PT 4239945 YP_718675.1 CDS sodA NC_008309.1 494512 495141 R superoxide dismutase, manganese complement(494512..495141) Haemophilus somnus 129PT 4239946 YP_718676.1 CDS mdh NC_008309.1 495280 497547 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(495280..497547) Haemophilus somnus 129PT 4239947 YP_718677.2 CDS aspA NC_008309.1 497743 499158 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(497743..499158) Haemophilus somnus 129PT 4239948 YP_718678.1 CDS groES NC_008309.1 499396 499686 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 499396..499686 Haemophilus somnus 129PT 4239949 YP_718679.1 CDS groEL NC_008309.1 499717 501360 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 499717..501360 Haemophilus somnus 129PT 4239950 YP_718680.1 CDS metJ NC_008309.1 501532 501849 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 501532..501849 Haemophilus somnus 129PT 4239951 YP_718681.1 CDS HS_0470 NC_008309.1 501891 502535 D hypothetical protein 501891..502535 Haemophilus somnus 129PT 4239952 YP_718682.1 CDS HS_0471 NC_008309.1 502539 502982 D hypothetical protein 502539..502982 Haemophilus somnus 129PT 4239953 YP_718683.1 CDS hemN NC_008309.1 502983 504350 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 502983..504350 Haemophilus somnus 129PT 4239954 YP_718684.1 CDS smpB NC_008309.1 504384 504866 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(504384..504866) Haemophilus somnus 129PT 4239955 YP_718685.1 CDS ubiD NC_008309.1 504994 506469 D 3-octaprenyl-4hydroxybenzoate decarboxylase 504994..506469 Haemophilus somnus 129PT 4239956 YP_718686.1 CDS metC NC_008309.1 506509 507699 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(506509..507699) Haemophilus somnus 129PT 4239957 YP_718687.1 CDS tsaA NC_008309.1 507852 508454 D peroxiredoxin; AhpC/TSA family protein 507852..508454 Haemophilus somnus 129PT 4239958 YP_718688.1 CDS rpsO NC_008309.1 508639 508908 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(508639..508908) Haemophilus somnus 129PT 4239959 YP_718689.1 CDS HS_0478 NC_008309.1 509163 517718 R cell-surface large adhesin complement(509163..517718) Haemophilus somnus 129PT 4239960 YP_718690.1 CDS glyS NC_008309.1 518592 520658 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 518592..520658 Haemophilus somnus 129PT 4239961 YP_718691.1 CDS HS_0480 NC_008309.1 520757 521140 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(520757..521140) Haemophilus somnus 129PT 4239962 YP_718692.1 CDS ung NC_008309.1 521400 522071 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 521400..522071 Haemophilus somnus 129PT 4239963 YP_718693.1 CDS HS_0482 NC_008309.1 522087 522863 D hypothetical protein 522087..522863 Haemophilus somnus 129PT 4239964 YP_718694.1 CDS HS_0483 NC_008309.1 522860 523414 D hypothetical protein 522860..523414 Haemophilus somnus 129PT 4239965 YP_718695.1 CDS HS_0484 NC_008309.1 523429 524325 D cation efflux protein 523429..524325 Haemophilus somnus 129PT 4239966 YP_718696.1 CDS pfkA NC_008309.1 524438 525403 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 524438..525403 Haemophilus somnus 129PT 4239967 YP_718697.1 CDS HS_0486 NC_008309.1 525674 526720 D transposase 525674..526720 Haemophilus somnus 129PT 4239968 YP_718698.1 CDS hflK NC_008309.1 527119 528381 D phage lambda CII stabilizer; possible CII-specific protease; HflK protein 527119..528381 Haemophilus somnus 129PT 4239969 YP_718699.1 CDS hflC NC_008309.1 528381 529268 D protease specific for phage lambda CII repressor; HflC protein 528381..529268 Haemophilus somnus 129PT 4239970 YP_718700.1 CDS lon NC_008309.1 529557 531968 D Lon-A peptidase 529557..531968 Haemophilus somnus 129PT 4239971 YP_718701.1 CDS holD NC_008309.1 532146 532550 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 532146..532550 Haemophilus somnus 129PT 4239972 YP_718702.1 CDS rimI NC_008309.1 532554 533000 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 532554..533000 Haemophilus somnus 129PT 4239973 YP_718703.1 CDS dapA NC_008309.1 533075 533971 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(533075..533971) Haemophilus somnus 129PT 4239974 YP_718704.1 CDS bcp NC_008309.1 534081 534557 D bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 534081..534557 Haemophilus somnus 129PT 4239975 YP_718705.1 CDS ilvE NC_008309.1 534638 535657 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(534638..535657) Haemophilus somnus 129PT 4239976 YP_718706.1 CDS gcvA NC_008309.1 536097 537002 D Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 536097..537002 Haemophilus somnus 129PT 4239977 YP_718707.1 CDS HS_0496 NC_008309.1 536995 538080 D RNA 2'-O-ribose methyltransferase 536995..538080 Haemophilus somnus 129PT 4239978 YP_718708.1 CDS uvrD NC_008309.1 538228 540408 D unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 538228..540408 Haemophilus somnus 129PT 4239979 YP_718709.1 CDS lpxH NC_008309.1 540474 541178 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(540474..541178) Haemophilus somnus 129PT 4239980 YP_718710.1 CDS plsC NC_008309.1 541289 542014 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 541289..542014 Haemophilus somnus 129PT 4239981 YP_718711.1 CDS sufI NC_008309.1 542030 543433 D cell division protein SufI 542030..543433 Haemophilus somnus 129PT 4239982 YP_718712.1 CDS rnt NC_008309.1 543483 544139 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(543483..544139) Haemophilus somnus 129PT 4239983 YP_718713.1 CDS gloA NC_008309.1 544227 544637 R lactoylglutathione lyase complement(544227..544637) Haemophilus somnus 129PT 4239984 YP_718714.1 CDS engD NC_008309.1 544887 545978 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(544887..545978) Haemophilus somnus 129PT 4239985 YP_718715.1 CDS pth NC_008309.1 546045 546629 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(546045..546629) Haemophilus somnus 129PT 4239986 YP_718716.1 CDS HS_0505 NC_008309.1 546715 547242 D hypothetical protein 546715..547242 Haemophilus somnus 129PT 4239987 YP_718717.1 CDS HS_0506 NC_008309.1 547235 547567 D hypothetical protein 547235..547567 Haemophilus somnus 129PT 4239988 YP_718718.1 CDS ntpA NC_008309.1 547721 548173 D converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 547721..548173 Haemophilus somnus 129PT 4239989 YP_718719.1 CDS HS_0508 NC_008309.1 548175 548915 D hypothetical protein 548175..548915 Haemophilus somnus 129PT 4239990 YP_718720.1 CDS ruvC NC_008309.1 549074 549643 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 549074..549643 Haemophilus somnus 129PT 4239991 YP_718721.1 CDS glpQ NC_008309.1 549723 550808 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(549723..550808) Haemophilus somnus 129PT 4239992 YP_718722.1 CDS glpT NC_008309.1 550922 552367 R glycerol 3-phosphate transporter complement(550922..552367) Haemophilus somnus 129PT 4239993 YP_718723.1 CDS glpA NC_008309.1 552693 554381 D anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 552693..554381 Haemophilus somnus 129PT 4239994 YP_718724.1 CDS glpB NC_008309.1 554371 555669 D sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 554371..555669 Haemophilus somnus 129PT 4239995 YP_718725.1 CDS glpC NC_008309.1 555680 556951 D anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 555680..556951 Haemophilus somnus 129PT 4239996 YP_718726.1 CDS glpR NC_008309.1 557001 557759 R glycerol-3-phosphate regulon repressor complement(557001..557759) Haemophilus somnus 129PT 4239997 YP_718727.1 CDS pepA NC_008309.1 558033 559520 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(558033..559520) Haemophilus somnus 129PT 4239998 YP_718728.1 CDS HS_0517 NC_008309.1 559639 560742 D permease 559639..560742 Haemophilus somnus 129PT 4239999 YP_718729.1 CDS HS_0518 NC_008309.1 560755 561825 D permease 560755..561825 Haemophilus somnus 129PT 4240000 YP_718730.1 CDS intA NC_008309.1 562270 563574 D phage integrase 562270..563574 Haemophilus somnus 129PT 4240002 YP_718731.1 CDS HS_0520 NC_008309.1 564106 564357 D hypothetical protein 564106..564357 Haemophilus somnus 129PT 4240003 YP_718732.1 CDS HS_0521 NC_008309.1 564367 564879 D hypothetical protein 564367..564879 Haemophilus somnus 129PT 4240004 YP_718733.1 CDS HS_0522 NC_008309.1 565047 565268 D phage transcriptional regulator 565047..565268 Haemophilus somnus 129PT 4240005 YP_718734.1 CDS HS_0523 NC_008309.1 565278 565523 D hypothetical protein 565278..565523 Haemophilus somnus 129PT 4240006 YP_718735.1 CDS HS_0524 NC_008309.1 565524 565763 D hypothetical protein 565524..565763 Haemophilus somnus 129PT 4240007 YP_718736.1 CDS HS_0525 NC_008309.1 565777 566259 D hypothetical protein 565777..566259 Haemophilus somnus 129PT 4240008 YP_718737.1 CDS HS_0526 NC_008309.1 566252 566476 D hypothetical protein 566252..566476 Haemophilus somnus 129PT 4240009 YP_718738.1 CDS HS_0527 NC_008309.1 566469 566729 D hypothetical protein 566469..566729 Haemophilus somnus 129PT 4240010 YP_718739.1 CDS HS_0528 NC_008309.1 566868 567359 D hypothetical protein 566868..567359 Haemophilus somnus 129PT 4240011 YP_718740.1 CDS HS_0529 NC_008309.1 567352 567585 D hypothetical protein 567352..567585 Haemophilus somnus 129PT 4240012 YP_718741.1 CDS HS_0530 NC_008309.1 567578 567829 D hypothetical protein 567578..567829 Haemophilus somnus 129PT 4240013 YP_718742.1 CDS HS_0531 NC_008309.1 567813 568184 D hypothetical protein 567813..568184 Haemophilus somnus 129PT 4240014 YP_718743.1 CDS HS_0532 NC_008309.1 568181 568708 D hypothetical protein 568181..568708 Haemophilus somnus 129PT 4240015 YP_718744.1 CDS HS_0533 NC_008309.1 568711 570621 D phage DNA primase-like protein 568711..570621 Haemophilus somnus 129PT 4240016 YP_718745.1 CDS HS_0534 NC_008309.1 571152 571433 D hypothetical protein 571152..571433 Haemophilus somnus 129PT 4240017 YP_718746.1 CDS HS_0535 NC_008309.1 571469 571864 D transcriptional regulator 571469..571864 Haemophilus somnus 129PT 4240018 YP_718747.1 CDS HS_0536 NC_008309.1 572003 572296 D hypothetical protein 572003..572296 Haemophilus somnus 129PT 4240019 YP_718748.1 CDS HS_0537 NC_008309.1 572309 572896 D hypothetical protein 572309..572896 Haemophilus somnus 129PT 4240020 YP_718749.1 CDS HS_0538 NC_008309.1 572889 573335 D hypothetical protein 572889..573335 Haemophilus somnus 129PT 4240021 YP_718750.1 CDS HS_0539 NC_008309.1 573579 573782 D hypothetical protein 573579..573782 Haemophilus somnus 129PT 4240022 YP_718751.1 CDS HS_0540 NC_008309.1 574743 575204 R hypothetical protein complement(574743..575204) Haemophilus somnus 129PT 4240023 YP_718752.1 CDS HS_0541 NC_008309.1 575341 576051 R hypothetical protein complement(575341..576051) Haemophilus somnus 129PT 4240024 YP_718753.1 CDS ubiE NC_008309.1 576234 577019 D 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase 576234..577019 Haemophilus somnus 129PT 4240025 YP_718754.1 CDS HS_0543 NC_008309.1 577028 577663 D hypothetical protein 577028..577663 Haemophilus somnus 129PT 4240026 YP_718755.1 CDS ubiB NC_008309.1 577663 579297 D 2-octaprenylphenol hydroxylase 577663..579297 Haemophilus somnus 129PT 4240027 YP_718756.1 CDS tatA NC_008309.1 579402 579623 D Sec-independent protein translocase 579402..579623 Haemophilus somnus 129PT 4240028 YP_718757.1 CDS tatB NC_008309.1 579627 580181 D Sec-independent protein translocase TatB 579627..580181 Haemophilus somnus 129PT 4240029 YP_718758.1 CDS tatC NC_008309.1 580178 580915 D Sec-independent protein translocase TatC 580178..580915 Haemophilus somnus 129PT 4240030 YP_718759.1 CDS hemB NC_008309.1 580981 582003 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 580981..582003 Haemophilus somnus 129PT 4240031 YP_718760.1 CDS purT NC_008309.1 582060 583241 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(582060..583241) Haemophilus somnus 129PT 4240032 YP_718761.1 CDS luxS NC_008309.1 583282 583788 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(583282..583788) Haemophilus somnus 129PT 4240033 YP_718762.1 CDS tktB NC_008309.1 584087 586075 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 584087..586075 Haemophilus somnus 129PT 4240034 YP_718763.2 CDS pyrG NC_008309.1 586302 587930 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 586302..587930 Haemophilus somnus 129PT 4240035 YP_718764.1 CDS HS_0553 NC_008309.1 587978 589612 R acetyltransferase complement(587978..589612) Haemophilus somnus 129PT 4240036 YP_718765.1 CDS HS_0554 NC_008309.1 589932 590333 D hypothetical protein 589932..590333 Haemophilus somnus 129PT 4240037 YP_718766.1 CDS HS_0555 NC_008309.1 590355 591281 D phage integrase 590355..591281 Haemophilus somnus 129PT 4240038 YP_718767.1 CDS hsdS NC_008309.1 591294 591845 R type I restriction enzyme, specificity subunit complement(591294..591845) Haemophilus somnus 129PT 4240039 YP_718768.1 CDS HS_0557 NC_008309.1 592009 592530 R phage P1-like protein complement(592009..592530) Haemophilus somnus 129PT 4240040 YP_718769.1 CDS rlfA NC_008309.1 592523 593221 R hypothetical protein complement(592523..593221) Haemophilus somnus 129PT 4240041 YP_718770.1 CDS hsdR NC_008309.1 593223 596423 R type I site-specific deoxyribonuclease, restriction subunit complement(593223..596423) Haemophilus somnus 129PT 4240042 YP_718771.1 CDS hsdS NC_008309.1 596416 596994 R type I restriction enzyme, specificity subunit complement(596416..596994) Haemophilus somnus 129PT 4240043 YP_718772.1 CDS eno NC_008309.1 597234 598535 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 597234..598535 Haemophilus somnus 129PT 4240044 YP_718773.1 CDS menB NC_008309.1 598843 599679 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 598843..599679 Haemophilus somnus 129PT 4240045 YP_718774.1 CDS menC NC_008309.1 599893 600891 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 599893..600891 Haemophilus somnus 129PT 4240046 YP_718775.1 CDS fis NC_008309.1 600940 601236 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(600940..601236) Haemophilus somnus 129PT 4240047 YP_718776.1 CDS dusB NC_008309.1 601230 602213 R tRNA-dihydrouridine synthase B complement(601230..602213) Haemophilus somnus 129PT 4240048 YP_718777.1 CDS prmA NC_008309.1 602400 603290 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(602400..603290) Haemophilus somnus 129PT 4240049 YP_718778.1 CDS panF NC_008309.1 603291 604733 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(603291..604733) Haemophilus somnus 129PT 4240050 YP_718779.1 CDS HS_0567a NC_008309.1 604730 604966 R hypothetical protein complement(604730..604966) Haemophilus somnus 129PT 4240051 YP_718780.1 CDS accC NC_008309.1 605038 606384 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(605038..606384) Haemophilus somnus 129PT 4240052 YP_718781.1 CDS accB NC_008309.1 606445 606906 R biotin carboxyl carrier protein complement(606445..606906) Haemophilus somnus 129PT 4240053 YP_718782.1 CDS aroQ NC_008309.1 607095 607547 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(607095..607547) Haemophilus somnus 129PT 4240054 YP_718783.1 CDS HS_0571 NC_008309.1 607825 608745 D SPFH domain-containing protein/band 7 family protein 607825..608745 Haemophilus somnus 129PT 4240055 YP_718784.1 CDS HS_0572 NC_008309.1 608792 609235 D regulator of membrane protease activity 608792..609235 Haemophilus somnus 129PT 4240056 YP_718785.1 CDS HS_0573 NC_008309.1 609245 609865 D quinone family NAD(P)H dehydrogenase 609245..609865 Haemophilus somnus 129PT 4240057 YP_718786.1 CDS HS_0574 NC_008309.1 609877 610425 D oxidoreductase component 609877..610425 Haemophilus somnus 129PT 4240058 YP_718787.1 CDS htrB NC_008309.1 610451 611389 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(610451..611389) Haemophilus somnus 129PT 4240059 YP_718788.1 CDS rfaE NC_008309.1 611515 612942 D catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 611515..612942 Haemophilus somnus 129PT 4240060 YP_718789.1 CDS HS_0577 NC_008309.1 612952 613296 D arsenate reductase 612952..613296 Haemophilus somnus 129PT 4240061 YP_718790.1 CDS dapE NC_008309.1 613409 614542 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 613409..614542 Haemophilus somnus 129PT 4240062 YP_718791.1 CDS HS_0579 NC_008309.1 614496 615212 D D-alanyl-D-alanine carboxypeptidase-like protein 614496..615212 Haemophilus somnus 129PT 4240063 YP_718792.1 CDS nudF NC_008309.1 615265 615885 D ADP-ribose diphosphatase 615265..615885 Haemophilus somnus 129PT 4240064 YP_718793.1 CDS icc NC_008309.1 616024 616854 D cyclic 3',5'-adenosine monophosphate phosphodiesterase 616024..616854 Haemophilus somnus 129PT 4240065 YP_718794.1 CDS hpuB NC_008309.1 616932 619298 R transferrin binding protein A; heme uptake protein complement(616932..619298) Haemophilus somnus 129PT 4240066 YP_718795.1 CDS HS_0583 NC_008309.1 619605 620651 D transposase 619605..620651 Haemophilus somnus 129PT 4240067 YP_718796.1 CDS xylH NC_008309.1 620843 621916 R D-xylose ABC transporter permease complement(620843..621916) Haemophilus somnus 129PT 4240068 YP_718797.1 CDS xylG NC_008309.1 621974 623488 R with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit complement(621974..623488) Haemophilus somnus 129PT 4240069 YP_718798.1 CDS xylF NC_008309.1 623548 624549 R periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF complement(623548..624549) Haemophilus somnus 129PT 4240070 YP_718799.1 CDS xylA NC_008309.1 624797 626122 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 624797..626122 Haemophilus somnus 129PT 4240071 YP_718800.1 CDS xylB NC_008309.1 626191 627651 D xylulokinase 626191..627651 Haemophilus somnus 129PT 4240072 YP_718801.1 CDS HS_0589 NC_008309.1 627781 628941 R adhesin complement(627781..628941) Haemophilus somnus 129PT 4240073 YP_718802.1 CDS sapF NC_008309.1 629239 630033 R peptide ABC transporter ATP-binding protein complement(629239..630033) Haemophilus somnus 129PT 4240074 YP_718803.1 CDS sapD NC_008309.1 630049 631095 R peptide ABC transporter ATP-binding protein complement(630049..631095) Haemophilus somnus 129PT 4240075 YP_718804.1 CDS sapC NC_008309.1 631107 631994 R peptide ABC transporter permease complement(631107..631994) Haemophilus somnus 129PT 4240076 YP_718805.1 CDS sapB NC_008309.1 631984 632949 R peptide ABC transporter permease complement(631984..632949) Haemophilus somnus 129PT 4240077 YP_718806.1 CDS sapA NC_008309.1 632977 634665 R peptide ABC transporter periplasmic-binding protein complement(632977..634665) Haemophilus somnus 129PT 4240078 YP_718807.1 CDS HS_0595 NC_008309.1 634732 636141 D hypothetical protein 634732..636141 Haemophilus somnus 129PT 4240079 YP_718808.1 CDS HS_0596 NC_008309.1 636151 637224 D hypothetical protein 636151..637224 Haemophilus somnus 129PT 4240080 YP_718809.1 CDS grxA NC_008309.1 637331 637594 R functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 complement(637331..637594) Haemophilus somnus 129PT 4240081 YP_718810.1 CDS parC NC_008309.1 637715 639961 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(637715..639961) Haemophilus somnus 129PT 4240082 YP_718811.1 CDS parE NC_008309.1 640056 641948 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(640056..641948) Haemophilus somnus 129PT 4240083 YP_718812.1 CDS ampG NC_008309.1 642004 643290 R beta-lactamase synthesis signal transducer; AmpG protein complement(642004..643290) Haemophilus somnus 129PT 4240084 YP_718813.1 CDS HS_0601 NC_008309.1 643495 644784 D xanthine/uracil family permease 643495..644784 Haemophilus somnus 129PT 4240085 YP_718814.1 CDS HS_0602 NC_008309.1 644891 646105 R adhesin complement(644891..646105) Haemophilus somnus 129PT 4240086 YP_718815.1 CDS dnaQ NC_008309.1 646670 647428 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(646670..647428) Haemophilus somnus 129PT 4240089 YP_718816.1 CDS rnhA NC_008309.1 647499 647963 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 647499..647963 Haemophilus somnus 129PT 4240090 YP_718817.1 CDS pmi NC_008309.1 648022 649227 R mannose-6-phosphate isomerase complement(648022..649227) Haemophilus somnus 129PT 4240091 YP_718818.1 CDS HS_0606 NC_008309.1 649224 649703 R hypothetical protein complement(649224..649703) Haemophilus somnus 129PT 4240092 YP_718819.1 CDS manZ NC_008309.1 649761 650597 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(649761..650597) Haemophilus somnus 129PT 4240093 YP_718820.1 CDS manY NC_008309.1 650612 651412 R protein-N(pi)-phosphohistidine-sugar phosphotransferase (mannose-specific phosphotransferase system IIC component) complement(650612..651412) Haemophilus somnus 129PT 4240094 YP_718821.1 CDS manX NC_008309.1 651424 652395 R protein-N(pi)-phosphohistidine-sugar phosphotransferase (phosphotransferase system mannose/fructose-specific IIA component) complement(651424..652395) Haemophilus somnus 129PT 4240095 YP_718822.1 CDS HS_0610 NC_008309.1 652616 652969 R hypothetical protein complement(652616..652969) Haemophilus somnus 129PT 4240096 YP_718823.1 CDS serC NC_008309.1 653162 654238 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 653162..654238 Haemophilus somnus 129PT 4240097 YP_718824.1 CDS hisC NC_008309.1 654297 655406 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 654297..655406 Haemophilus somnus 129PT 4240098 YP_718825.1 CDS aroA NC_008309.1 655469 656767 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 655469..656767 Haemophilus somnus 129PT 4240099 YP_718826.1 CDS HS_0614 NC_008309.1 657001 658215 D membrane fusion protein 657001..658215 Haemophilus somnus 129PT 4240100 YP_718827.1 CDS acrB NC_008309.1 658237 661353 D cation/multidrug efflux protein 658237..661353 Haemophilus somnus 129PT 4240101 YP_718828.1 CDS HS_0616 NC_008309.1 661379 662137 R catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB complement(661379..662137) Haemophilus somnus 129PT 4240102 YP_718829.1 CDS menD NC_008309.1 662150 663856 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(662150..663856) Haemophilus somnus 129PT 4240103 YP_718830.1 CDS menF NC_008309.1 663862 665145 R isochorismate synthase complement(663862..665145) Haemophilus somnus 129PT 4240104 YP_718831.1 CDS HS_0619 NC_008309.1 665297 666511 D broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 665297..666511 Haemophilus somnus 129PT 4240105 YP_718832.1 CDS HS_0620 NC_008309.1 667230 667616 R transcriptional regulator complement(667230..667616) Haemophilus somnus 129PT 4240107 YP_718833.1 CDS HS_0621 NC_008309.1 667778 668578 D hypothetical protein 667778..668578 Haemophilus somnus 129PT 4240108 YP_718834.1 CDS HS_0622 NC_008309.1 668613 669866 D hypothetical protein 668613..669866 Haemophilus somnus 129PT 4240109 YP_718835.1 CDS fadR NC_008309.1 669927 670646 R Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator complement(669927..670646) Haemophilus somnus 129PT 4240110 YP_718836.1 CDS dshB NC_008309.1 670750 671370 D disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 670750..671370 Haemophilus somnus 129PT 4240111 YP_718837.1 CDS terC NC_008309.1 672127 673131 D possible tellurium resistance protein; membrane protein 672127..673131 Haemophilus somnus 129PT 4240112 YP_718838.1 CDS HS_0626 NC_008309.1 673133 673495 D hypothetical protein 673133..673495 Haemophilus somnus 129PT 4240113 YP_718839.1 CDS HS_0627 NC_008309.1 673507 674157 D hypothetical protein 673507..674157 Haemophilus somnus 129PT 4240114 YP_718840.1 CDS HS_0628 NC_008309.1 674167 674805 D hypothetical protein 674167..674805 Haemophilus somnus 129PT 4240115 YP_718841.1 CDS HS_0629 NC_008309.1 674853 675530 D hypothetical protein 674853..675530 Haemophilus somnus 129PT 4240116 YP_718842.1 CDS HS_0630 NC_008309.1 675539 676570 D hypothetical protein 675539..676570 Haemophilus somnus 129PT 4240117 YP_718843.1 CDS HS_0631 NC_008309.1 676573 678123 D hypothetical protein 676573..678123 Haemophilus somnus 129PT 4240118 YP_718844.1 CDS HS_0632 NC_008309.1 678116 679612 D serine/threonine kinase-like protein 678116..679612 Haemophilus somnus 129PT 4240119 YP_718845.1 CDS terD NC_008309.1 679642 680220 D tellurium resistance protein; stress response protein 679642..680220 Haemophilus somnus 129PT 4240120 YP_718846.1 CDS terE NC_008309.1 680223 680969 D tellurium resistance protein; stress response protein 680223..680969 Haemophilus somnus 129PT 4240121 YP_718847.1 CDS terZ NC_008309.1 680979 681560 D tellurium resistance protein; stress response protein 680979..681560 Haemophilus somnus 129PT 4240122 YP_718848.1 CDS lob2d NC_008309.1 682438 683502 R glycosyltransferase family 8 lipopolysaccharide biosynthesis protein complement(682438..683502) Haemophilus somnus 129PT 4240123 YP_718849.1 CDS lob2A NC_008309.1 683679 684155 R lipooligosaccharide biosynthesis protein complement(683679..684155) Haemophilus somnus 129PT 4240125 YP_718850.1 CDS lob1 NC_008309.1 684277 685170 D Lob1 protein 684277..685170 Haemophilus somnus 129PT 4240126 YP_718851.1 CDS fbpC NC_008309.1 685341 686390 R Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit complement(685341..686390) Haemophilus somnus 129PT 4240127 YP_718852.1 CDS afuB NC_008309.1 686457 688514 R Fe3+ ABC transporter permease complement(686457..688514) Haemophilus somnus 129PT 4240128 YP_718853.1 CDS afuA NC_008309.1 688536 689567 R Fe3+ ABC transporter iron-binding protein complement(688536..689567) Haemophilus somnus 129PT 4240129 YP_718854.1 CDS HS_0642 NC_008309.1 689621 690274 R insertion element IS1016 transposase complement(689621..690274) Haemophilus somnus 129PT 4240130 YP_718855.1 CDS afuA NC_008309.1 690316 691356 R Fe3+ ABC transporter iron-binding protein complement(690316..691356) Haemophilus somnus 129PT 4240131 YP_718856.1 CDS udk NC_008309.1 691560 692201 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 691560..692201 Haemophilus somnus 129PT 4240132 YP_718857.1 CDS dcd NC_008309.1 692211 692795 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 692211..692795 Haemophilus somnus 129PT 4240133 YP_718858.1 CDS HS_0646 NC_008309.1 692810 694003 D hypothetical protein 692810..694003 Haemophilus somnus 129PT 4240134 YP_718859.1 CDS HS_0647 NC_008309.1 694283 695284 D sodium-dependent transporter 694283..695284 Haemophilus somnus 129PT 4240135 YP_718860.1 CDS adk NC_008309.1 695374 696018 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 695374..696018 Haemophilus somnus 129PT 4240136 YP_718861.1 CDS grpE NC_008309.1 696104 696691 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(696104..696691) Haemophilus somnus 129PT 4240137 YP_718862.1 CDS ppnK NC_008309.1 696834 697751 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 696834..697751 Haemophilus somnus 129PT 4240138 YP_718863.1 CDS recN NC_008309.1 697829 699508 D DNA repair protein 697829..699508 Haemophilus somnus 129PT 4240139 YP_718864.1 CDS nhaP NC_008309.1 699699 701009 R Na+/H+ antiporter complement(699699..701009) Haemophilus somnus 129PT 4240140 YP_718865.1 CDS HS_0653 NC_008309.1 701338 701688 R translation inhibitor of mRNA complement(701338..701688) Haemophilus somnus 129PT 4240141 YP_718866.1 CDS HS_0654 NC_008309.1 701799 702521 D hypothetical protein 701799..702521 Haemophilus somnus 129PT 4240142 YP_718867.1 CDS rimK NC_008309.1 702536 703435 D SSU ribosomal protein S6P modification protein 702536..703435 Haemophilus somnus 129PT 4240143 YP_718868.1 CDS lpxK NC_008309.1 703554 704549 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 703554..704549 Haemophilus somnus 129PT 4240144 YP_718869.1 CDS HS_0657 NC_008309.1 704546 704743 D hypothetical protein 704546..704743 Haemophilus somnus 129PT 4240145 YP_718870.1 CDS kdsB NC_008309.1 704758 705528 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 704758..705528 Haemophilus somnus 129PT 4240146 YP_718871.1 CDS uvrC NC_008309.1 705521 707350 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 705521..707350 Haemophilus somnus 129PT 4240147 YP_718872.1 CDS HS_0660 NC_008309.1 707416 707802 R hypothetical protein complement(707416..707802) Haemophilus somnus 129PT 4240148 YP_718873.1 CDS rnb NC_008309.1 707927 709906 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(707927..709906) Haemophilus somnus 129PT 4240149 YP_718874.1 CDS fabI NC_008309.1 709971 710759 R enoyl-[acyl-carrier-protein] reductase [NADH] complement(709971..710759) Haemophilus somnus 129PT 4240150 YP_718875.1 CDS HS_0663 NC_008309.1 710850 711605 R hypothetical protein complement(710850..711605) Haemophilus somnus 129PT 4240151 YP_718876.1 CDS mnmC NC_008309.1 711629 713659 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(711629..713659) Haemophilus somnus 129PT 4240152 YP_718877.1 CDS fabB NC_008309.1 713814 715034 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 713814..715034 Haemophilus somnus 129PT 4240153 YP_718878.1 CDS HS_0666 NC_008309.1 715124 715564 R transposase complement(715124..715564) Haemophilus somnus 129PT 4240154 YP_718879.1 CDS HS_0667 NC_008309.1 715676 716080 D transposase 715676..716080 Haemophilus somnus 129PT 4240155 YP_718880.1 CDS HS_0668 NC_008309.1 716028 716723 D transposase 716028..716723 Haemophilus somnus 129PT 4240156 YP_718881.1 CDS HS_0669 NC_008309.1 716869 717360 R hypothetical protein complement(716869..717360) Haemophilus somnus 129PT 4240157 YP_718882.1 CDS HS_0670 NC_008309.1 717522 717911 D transcriptional regulator 717522..717911 Haemophilus somnus 129PT 4240158 YP_718883.1 CDS tyrA NC_008309.1 718191 719315 R catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase complement(718191..719315) Haemophilus somnus 129PT 4240159 YP_718884.1 CDS purE NC_008309.1 719516 720013 D phosphoribosylaminoimidazole carboxylase 719516..720013 Haemophilus somnus 129PT 4240160 YP_718885.1 CDS srlR NC_008309.1 720224 721033 R regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR complement(720224..721033) Haemophilus somnus 129PT 4240161 YP_718886.1 CDS HS_0674 NC_008309.1 721076 721723 R phosphatase complement(721076..721723) Haemophilus somnus 129PT 4240162 YP_718887.1 CDS gutM NC_008309.1 721798 722166 R regulator for glucitol utilization; DNA-binding transcriptional activator GutM complement(721798..722166) Haemophilus somnus 129PT 4240163 YP_718888.1 CDS srlD NC_008309.1 722221 723009 R catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase complement(722221..723009) Haemophilus somnus 129PT 4240164 YP_718889.1 CDS srlB NC_008309.1 723056 723421 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA complement(723056..723421) Haemophilus somnus 129PT 4240165 YP_718890.1 CDS srlE NC_008309.1 723482 724477 R PTS system, glucitol/sorbitol-specific IIBC component complement(723482..724477) Haemophilus somnus 129PT 4240166 YP_718891.1 CDS srlA NC_008309.1 724514 725068 R PTS system, glucitol/sorbitol-specific IIC2 component complement(724514..725068) Haemophilus somnus 129PT 4240167 YP_718892.1 CDS visC NC_008309.1 725395 726570 R 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(725395..726570) Haemophilus somnus 129PT 4240168 YP_718893.1 CDS ubiH NC_008309.1 726597 727796 R 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(726597..727796) Haemophilus somnus 129PT 4240169 YP_718894.1 CDS pepP NC_008309.1 727824 729143 R aminopeptidase P complement(727824..729143) Haemophilus somnus 129PT 4240170 YP_718895.1 CDS HS_0683 NC_008309.1 729310 729867 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(729310..729867) Haemophilus somnus 129PT 4240171 YP_718896.1 CDS HS_0684 NC_008309.1 730010 730309 D cell division protein ZapA 730010..730309 Haemophilus somnus 129PT 4240172 YP_718897.1 CDS HS_0685 NC_008309.1 730605 731171 D 5-formyltetrahydrofolate cyclo-ligase 730605..731171 Haemophilus somnus 129PT 4240173 YP_718898.1 CDS aphA NC_008309.1 731160 731858 R aphA-like regulator complement(731160..731858) Haemophilus somnus 129PT 4240174 YP_718899.1 CDS serB NC_008309.1 731926 732879 D catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 731926..732879 Haemophilus somnus 129PT 4240175 YP_718900.1 CDS HS_0688 NC_008309.1 732896 733387 D nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 732896..733387 Haemophilus somnus 129PT 4240176 YP_718901.1 CDS tonB NC_008309.1 733485 734237 R TonB protein complement(733485..734237) Haemophilus somnus 129PT 4240177 YP_718902.1 CDS exbD NC_008309.1 734237 734635 R biopolymer transport protein complement(734237..734635) Haemophilus somnus 129PT 4240178 YP_718903.1 CDS exbB NC_008309.1 734628 735083 R biopolymer transport protein complement(734628..735083) Haemophilus somnus 129PT 4240179 YP_718904.1 CDS argH NC_008309.1 735477 736850 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(735477..736850) Haemophilus somnus 129PT 4240180 YP_718905.1 CDS rbn NC_008309.1 737288 738154 D RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 737288..738154 Haemophilus somnus 129PT 4240181 YP_718906.1 CDS dtd NC_008309.1 738151 738585 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 738151..738585 Haemophilus somnus 129PT 4240182 YP_718907.1 CDS nanA NC_008309.1 738633 739511 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(738633..739511) Haemophilus somnus 129PT 4240183 YP_718908.1 CDS HS_0696 NC_008309.1 739544 740413 R RpiR family transcriptional regulator complement(739544..740413) Haemophilus somnus 129PT 4240184 YP_718909.1 CDS HS_0697 NC_008309.1 740448 740918 R hypothetical protein complement(740448..740918) Haemophilus somnus 129PT 4240185 YP_718910.1 CDS nanK NC_008309.1 740934 741812 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(740934..741812) Haemophilus somnus 129PT 4240186 YP_718911.1 CDS nanE NC_008309.1 741829 742521 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(741829..742521) Haemophilus somnus 129PT 4240187 YP_718912.1 CDS neuA NC_008309.1 742567 743157 R N-acylneuraminate cytidylyltransferase complement(742567..743157) Haemophilus somnus 129PT 4240188 YP_718913.1 CDS dctP NC_008309.1 743326 744378 D TRAP dicarboxylate transporter, periplasmic component 743326..744378 Haemophilus somnus 129PT 4240189 YP_718914.1 CDS dctQ NC_008309.1 744433 746298 D TRAP dicarboxylate transporter, permease component 744433..746298 Haemophilus somnus 129PT 4240190 YP_718915.1 CDS pnp NC_008309.1 746649 748790 D polynucleotide phosphorylase/polyadenylase 746649..748790 Haemophilus somnus 129PT 4240191 YP_718916.1 CDS deaD NC_008309.1 749193 750998 D ATP-dependent RNA helicase 749193..750998 Haemophilus somnus 129PT 4240192 YP_718917.1 CDS infA NC_008309.1 751060 751278 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(751060..751278) Haemophilus somnus 129PT 4240193 YP_718918.1 CDS neuA NC_008309.1 751489 752037 D CMP-N-acetylneuraminic acid synthetase 751489..752037 Haemophilus somnus 129PT 4240194 YP_718919.1 CDS rmlB NC_008309.1 752266 753285 D dTDP-glucose 4,6-dehydratase 752266..753285 Haemophilus somnus 129PT 4240195 YP_718920.1 CDS lctP NC_008309.1 753459 755138 D L-lactate permease 753459..755138 Haemophilus somnus 129PT 4240196 YP_718921.1 CDS HS_0709 NC_008309.1 755218 755949 D hypothetical protein 755218..755949 Haemophilus somnus 129PT 4240197 YP_718922.1 CDS HS_0710 NC_008309.1 755951 757363 D hypothetical protein 755951..757363 Haemophilus somnus 129PT 4240198 YP_718923.1 CDS HS_0711 NC_008309.1 757444 758061 D hypothetical protein 757444..758061 Haemophilus somnus 129PT 4240199 YP_718924.1 CDS dipZ NC_008309.1 758136 759848 R two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor complement(758136..759848) Haemophilus somnus 129PT 4240200 YP_718925.1 CDS arcA NC_008309.1 760056 760772 D two-component response regulator 760056..760772 Haemophilus somnus 129PT 4240201 YP_718926.1 CDS rluC NC_008309.1 760954 761934 R catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C complement(760954..761934) Haemophilus somnus 129PT 4240202 YP_718927.1 CDS rne NC_008309.1 762353 765181 D ribonuclease E 762353..765181 Haemophilus somnus 129PT 4240203 YP_718928.1 CDS HS_0716 NC_008309.1 765404 765898 D transposase 765404..765898 Haemophilus somnus 129PT 4240204 YP_718929.1 CDS HS_0717 NC_008309.1 765882 766541 D transposase 765882..766541 Haemophilus somnus 129PT 4240205 YP_718930.1 CDS polA NC_008309.1 767061 769916 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(767061..769916) Haemophilus somnus 129PT 4240207 YP_718931.1 CDS rep NC_008309.1 770124 772136 D ATP-dependent DNA helicase Rep 770124..772136 Haemophilus somnus 129PT 4240208 YP_718932.1 CDS hugZ NC_008309.1 776536 777057 R heme binding protein complement(776536..777057) Haemophilus somnus 129PT 4240213 YP_718933.1 CDS hugX NC_008309.1 777075 777569 R heme utilization protein HuvX complement(777075..777569) Haemophilus somnus 129PT 4240214 YP_718934.1 CDS rrmJ NC_008309.1 777773 778402 D Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 777773..778402 Haemophilus somnus 129PT 4240215 YP_718935.1 CDS ftsH NC_008309.1 778524 780362 D FtsH peptidase 778524..780362 Haemophilus somnus 129PT 4240216 YP_718936.1 CDS HS_0726 NC_008309.1 780444 780668 D hypothetical protein 780444..780668 Haemophilus somnus 129PT 4240217 YP_718937.1 CDS licD NC_008309.1 780724 781380 D lipopolysaccharide cholinephosphotransferase 780724..781380 Haemophilus somnus 129PT 4240218 YP_718938.1 CDS hemR NC_008309.1 782166 783110 R hemin receptor, outer membrane protein complement(782166..783110) Haemophilus somnus 129PT 4240219 YP_718939.1 CDS folP NC_008309.1 783368 784195 D dihydropteroate synthase 783368..784195 Haemophilus somnus 129PT 4240220 YP_718940.1 CDS glmM NC_008309.1 784286 785620 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 784286..785620 Haemophilus somnus 129PT 4240221 YP_718941.1 CDS sixA NC_008309.1 785556 786101 D phosphohistidine phosphatase 785556..786101 Haemophilus somnus 129PT 4240222 YP_718942.1 CDS HS_0732 NC_008309.1 786106 787065 D permease 786106..787065 Haemophilus somnus 129PT 4240223 YP_718943.1 CDS dinG NC_008309.1 787193 789115 D ATP-dependent DNA helicase 787193..789115 Haemophilus somnus 129PT 4240224 YP_718944.1 CDS HS_0734 NC_008309.1 789120 789836 D glycoprotease 789120..789836 Haemophilus somnus 129PT 4240225 YP_718945.1 CDS fadD NC_008309.1 790062 791744 D Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 790062..791744 Haemophilus somnus 129PT 4240226 YP_718946.1 CDS rnd NC_008309.1 791850 792995 D ribonuclease D 791850..792995 Haemophilus somnus 129PT 4240227 YP_718947.1 CDS HS_0737 NC_008309.1 793113 793700 R hypothetical protein complement(793113..793700) Haemophilus somnus 129PT 4240228 YP_718948.1 CDS HS_0738 NC_008309.1 793762 794346 R phosphoheptose isomerase complement(793762..794346) Haemophilus somnus 129PT 4240229 YP_718949.1 CDS HS_0739 NC_008309.1 794352 794714 R hypothetical protein complement(794352..794714) Haemophilus somnus 129PT 4240230 YP_718950.1 CDS lppC NC_008309.1 794725 796539 R LppC precursor complement(794725..796539) Haemophilus somnus 129PT 4240231 YP_718951.1 CDS HS_0741 NC_008309.1 796556 797401 D methyltransferase 796556..797401 Haemophilus somnus 129PT 4240232 YP_718952.1 CDS HS_0742 NC_008309.1 797478 798101 D translation factor SUA5 797478..798101 Haemophilus somnus 129PT 4240233 YP_718953.1 CDS rluB NC_008309.1 798231 799208 D ribosomal large subunit pseudouridine synthase B 798231..799208 Haemophilus somnus 129PT 4240234 YP_718954.1 CDS HS_0744 NC_008309.1 799472 799891 R hypothetical protein complement(799472..799891) Haemophilus somnus 129PT 4240235 YP_718955.1 CDS HS_0745 NC_008309.1 799904 800155 R hypothetical protein complement(799904..800155) Haemophilus somnus 129PT 4240236 YP_718956.1 CDS HS_0746 NC_008309.1 800661 802046 R outer membrane protein complement(800661..802046) Haemophilus somnus 129PT 4240237 YP_718957.1 CDS deoR NC_008309.1 802177 802908 R deoxyribose operon repressor complement(802177..802908) Haemophilus somnus 129PT 4240238 YP_718958.1 CDS deoC NC_008309.1 802933 803607 R catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase complement(802933..803607) Haemophilus somnus 129PT 4240239 YP_718959.1 CDS rbsK NC_008309.1 803777 804697 D ribokinase 803777..804697 Haemophilus somnus 129PT 4240240 YP_718960.1 CDS fucP NC_008309.1 804726 806000 D fucose permease 804726..806000 Haemophilus somnus 129PT 4240241 YP_718961.1 CDS HS_0751 NC_008309.1 806002 807015 D hypothetical protein 806002..807015 Haemophilus somnus 129PT 4240242 YP_718962.1 CDS rplM NC_008309.1 807284 807712 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 807284..807712 Haemophilus somnus 129PT 4240243 YP_718963.1 CDS rpsI NC_008309.1 807729 808121 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 807729..808121 Haemophilus somnus 129PT 4240244 YP_718964.1 CDS sspA NC_008309.1 808266 808904 D stringent starvation protein A 808266..808904 Haemophilus somnus 129PT 4240245 YP_718965.1 CDS sspB NC_008309.1 808912 809367 D ClpXP protease specificity-enhancing factor 808912..809367 Haemophilus somnus 129PT 4240246 YP_718966.1 CDS asnC NC_008309.1 809440 810843 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(809440..810843) Haemophilus somnus 129PT 4240247 YP_718967.1 CDS mlc NC_008309.1 811046 812263 D NagC-like transcriptional regulator 811046..812263 Haemophilus somnus 129PT 4240248 YP_718968.1 CDS HS_0758 NC_008309.1 812399 813187 R IclR family transcriptional regulator complement(812399..813187) Haemophilus somnus 129PT 4240249 YP_718969.1 CDS mdh NC_008309.1 813410 814408 D NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 813410..814408 Haemophilus somnus 129PT 4240250 YP_718970.1 CDS HS_0760 NC_008309.1 814506 814988 D tripartite ATP-independent periplasmic transporter DctQ 814506..814988 Haemophilus somnus 129PT 4240251 YP_718971.1 CDS HS_0761 NC_008309.1 814985 816265 D DedA family integral membrane protein 814985..816265 Haemophilus somnus 129PT 4240252 YP_718972.1 CDS HS_0762 NC_008309.1 816285 817271 D C4-dicarboxylate transport system, periplasmic component 816285..817271 Haemophilus somnus 129PT 4240253 YP_718973.1 CDS rbsA NC_008309.1 817351 818868 D ribose ABC transporter ATP-binding protein 817351..818868 Haemophilus somnus 129PT 4240254 YP_718974.1 CDS rbsC NC_008309.1 818911 819960 D ribose ABC transporter permease 818911..819960 Haemophilus somnus 129PT 4240255 YP_718975.1 CDS rbsB NC_008309.1 820001 821110 D ABC-type sugar-binding periplasmic protein 820001..821110 Haemophilus somnus 129PT 4240256 YP_718976.1 CDS HS_0766 NC_008309.1 821173 822060 D gluconolactonase 821173..822060 Haemophilus somnus 129PT 4240257 YP_718977.1 CDS HS_0767 NC_008309.1 822127 823065 R sugar ABC transporter periplasmic sugar-binding protein complement(822127..823065) Haemophilus somnus 129PT 4240258 YP_718978.1 CDS rbsA NC_008309.1 823280 824770 D ribose ABC transporter ATP-binding protein 823280..824770 Haemophilus somnus 129PT 4240259 YP_718979.1 CDS rbsC NC_008309.1 824779 825807 D ribose transport system permease 824779..825807 Haemophilus somnus 129PT 4240260 YP_718980.1 CDS sgbK NC_008309.1 825909 827363 D L-xylulose kinase 825909..827363 Haemophilus somnus 129PT 4240261 YP_718981.1 CDS ulaD NC_008309.1 827374 828021 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 827374..828021 Haemophilus somnus 129PT 4240262 YP_718982.1 CDS sgbU NC_008309.1 828038 828910 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 828038..828910 Haemophilus somnus 129PT 4240263 YP_718983.1 CDS sgbE NC_008309.1 828904 829599 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 828904..829599 Haemophilus somnus 129PT 4240264 YP_718984.1 CDS HS_0774 NC_008309.1 829642 830463 R HAD superfamily hydrolase complement(829642..830463) Haemophilus somnus 129PT 4240265 YP_718985.1 CDS pldB NC_008309.1 830702 831658 D lysophospholipase L2 830702..831658 Haemophilus somnus 129PT 4240266 YP_718986.1 CDS crcB NC_008309.1 831636 832019 R camphor resistance protein CrcB complement(831636..832019) Haemophilus somnus 129PT 4240267 YP_718987.1 CDS HS_0777 NC_008309.1 832039 832857 R HAD superfamily hydrolase complement(832039..832857) Haemophilus somnus 129PT 4240268 YP_718988.1 CDS frxA NC_008309.1 832895 833557 R NAD(P)H nitroreductase complement(832895..833557) Haemophilus somnus 129PT 4240269 YP_718989.1 CDS HS_0779 NC_008309.1 833578 833874 R hypothetical protein complement(833578..833874) Haemophilus somnus 129PT 4240270 YP_718990.1 CDS tyrP NC_008309.1 833899 835110 R tyrosine-specific transport protein complement(833899..835110) Haemophilus somnus 129PT 4240271 YP_718991.1 CDS fbpC NC_008309.1 835204 836253 R iron(III) ABC transporter ATP-binding protein complement(835204..836253) Haemophilus somnus 129PT 4240272 YP_718992.1 CDS fbpB NC_008309.1 836253 837920 R iron-uptake permease inner membrane protein complement(836253..837920) Haemophilus somnus 129PT 4240273 YP_718993.1 CDS fbpA NC_008309.1 838077 839093 R periplasmic iron-binding protein complement(838077..839093) Haemophilus somnus 129PT 4240274 YP_718994.1 CDS dld NC_008309.1 839284 840975 R component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase complement(839284..840975) Haemophilus somnus 129PT 4240275 YP_718995.1 CDS dapD NC_008309.1 841187 842014 D 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 841187..842014 Haemophilus somnus 129PT 4240276 YP_718996.1 CDS purU NC_008309.1 842072 842908 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(842072..842908) Haemophilus somnus 129PT 4240277 YP_718997.1 CDS hns NC_008309.1 842970 843374 R DNA-binding protein H-NS complement(842970..843374) Haemophilus somnus 129PT 4240278 YP_718998.1 CDS HS_0788 NC_008309.1 843815 845362 D Na(+)/H(+) antiporter 843815..845362 Haemophilus somnus 129PT 4240279 YP_718999.1 CDS galE NC_008309.1 845481 846497 D UDP-galactose 4-epimerase 845481..846497 Haemophilus somnus 129PT 4240280 YP_719000.1 CDS HS_0790 NC_008309.1 847130 858892 D large adhesin 847130..858892 Haemophilus somnus 129PT 4240281 YP_719001.1 CDS prlC NC_008309.1 858994 861033 R oligopeptidase A complement(858994..861033) Haemophilus somnus 129PT 4240282 YP_719002.1 CDS HS_0792 NC_008309.1 861320 862510 D aminotransferase 861320..862510 Haemophilus somnus 129PT 4240283 YP_719003.1 CDS nhaC NC_008309.1 862500 863909 D Na(+)/H(+) antiporter 862500..863909 Haemophilus somnus 129PT 4240284 YP_719004.1 CDS xylR NC_008309.1 864058 865221 D AraC family transcriptional regulator 864058..865221 Haemophilus somnus 129PT 4240285 YP_719005.1 CDS HS_0795 NC_008309.1 865329 865691 D hypothetical protein 865329..865691 Haemophilus somnus 129PT 4240286 YP_719006.1 CDS HS_0796 NC_008309.1 865741 867312 D oligopeptide transporter, periplasmic-binding protein 865741..867312 Haemophilus somnus 129PT 4240287 YP_719007.1 CDS uup-A NC_008309.1 867381 869315 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 867381..869315 Haemophilus somnus 129PT 4240288 YP_719008.1 CDS HS_0798 NC_008309.1 869335 869568 D hypothetical protein 869335..869568 Haemophilus somnus 129PT 4240289 YP_719009.1 CDS HS_0799 NC_008309.1 869528 870514 R dihydroorotate oxidase B, catalytic subunit complement(869528..870514) Haemophilus somnus 129PT 4240290 YP_719010.1 CDS tnaB NC_008309.1 870879 872108 R tryptophan permease complement(870879..872108) Haemophilus somnus 129PT 4240291 YP_719011.1 CDS tnaA NC_008309.1 872174 873589 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(872174..873589) Haemophilus somnus 129PT 4240292 YP_719012.1 CDS pta NC_008309.1 873911 876049 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(873911..876049) Haemophilus somnus 129PT 4240293 YP_719013.1 CDS ackA NC_008309.1 876116 877312 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(876116..877312) Haemophilus somnus 129PT 4240294 YP_719014.1 CDS HS_0804 NC_008309.1 877544 877978 D hypothetical protein 877544..877978 Haemophilus somnus 129PT 4240295 YP_719015.1 CDS HS_0805 NC_008309.1 878091 878369 D hypothetical protein 878091..878369 Haemophilus somnus 129PT 4240296 YP_719016.1 CDS torZ NC_008309.1 878467 880872 R trimethylamine-N-oxide reductase 2, biotin sulfoxide reductase complement(878467..880872) Haemophilus somnus 129PT 4240297 YP_719017.1 CDS torY NC_008309.1 881203 882339 R cytochrome c-type protein complement(881203..882339) Haemophilus somnus 129PT 4240298 YP_719018.1 CDS yafS NC_008309.1 882511 883236 R SAM-dependent methyltransferase complement(882511..883236) Haemophilus somnus 129PT 4240299 YP_719019.1 CDS gloB NC_008309.1 883270 883971 D hydroxyacylglutathione hydrolase 883270..883971 Haemophilus somnus 129PT 4240300 YP_719020.1 CDS hemA NC_008309.1 884013 885392 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 884013..885392 Haemophilus somnus 129PT 4240301 YP_719021.1 CDS norM NC_008309.1 885404 886681 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(885404..886681) Haemophilus somnus 129PT 4240302 YP_719022.1 CDS ribE NC_008309.1 886852 887460 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 886852..887460 Haemophilus somnus 129PT 4240303 YP_719023.1 CDS HS_0813 NC_008309.1 887513 888853 R recombination factor protein RarA complement(887513..888853) Haemophilus somnus 129PT 4240304 YP_719024.1 CDS lolA NC_008309.1 888919 889533 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(888919..889533) Haemophilus somnus 129PT 4240305 YP_719025.1 CDS HS_0815 NC_008309.1 889755 890168 D hypothetical protein 889755..890168 Haemophilus somnus 129PT 4240306 YP_719026.1 CDS htrA NC_008309.1 890297 891685 D periplasmic serine protease 890297..891685 Haemophilus somnus 129PT 4240307 YP_719027.1 CDS yfkJ NC_008309.1 891770 892330 R low molecular weight protein-tyrosine-phosphatase complement(891770..892330) Haemophilus somnus 129PT 4240308 YP_719028.1 CDS HS_0818 NC_008309.1 892379 893101 D hypothetical protein 892379..893101 Haemophilus somnus 129PT 4240309 YP_719029.1 CDS HS_0819 NC_008309.1 893535 893996 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 893535..893996 Haemophilus somnus 129PT 4240311 YP_719030.1 CDS nusA NC_008309.1 894011 895492 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 894011..895492 Haemophilus somnus 129PT 4240312 YP_719031.1 CDS infB NC_008309.1 895513 898008 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 895513..898008 Haemophilus somnus 129PT 4240313 YP_719032.1 CDS rbfA NC_008309.1 898262 898642 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 898262..898642 Haemophilus somnus 129PT 4240314 YP_719033.1 CDS truB NC_008309.1 898655 899581 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 898655..899581 Haemophilus somnus 129PT 4240315 YP_719034.1 CDS metE NC_008309.1 899629 901902 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(899629..901902) Haemophilus somnus 129PT 4240316 YP_719035.1 CDS ponB NC_008309.1 902107 904371 R penicillin-binding protein 1B complement(902107..904371) Haemophilus somnus 129PT 4240317 YP_719036.1 CDS HS_0826 NC_008309.1 904443 904805 R hypothetical protein complement(904443..904805) Haemophilus somnus 129PT 4240318 YP_719037.1 CDS HS_0827 NC_008309.1 904809 905150 R HesB family protein complement(904809..905150) Haemophilus somnus 129PT 4240319 YP_719038.1 CDS map NC_008309.1 905284 906087 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 905284..906087 Haemophilus somnus 129PT 4240320 YP_719039.1 CDS glnD NC_008309.1 906145 908730 D PII uridylyl-transferase 906145..908730 Haemophilus somnus 129PT 4240321 YP_719040.1 CDS ribH NC_008309.1 908809 909282 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 908809..909282 Haemophilus somnus 129PT 4240322 YP_719041.1 CDS nusB NC_008309.1 909291 909725 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 909291..909725 Haemophilus somnus 129PT 4240323 YP_719042.1 CDS thiL NC_008309.1 909740 910747 D thiamine-monophosphate kinase 909740..910747 Haemophilus somnus 129PT 4240324 YP_719043.1 CDS pgpA NC_008309.1 910757 911242 D phosphatidylglycerophosphatase 910757..911242 Haemophilus somnus 129PT 4240325 YP_719044.1 CDS HS_0834 NC_008309.1 911255 911884 D lysine exporter protein 911255..911884 Haemophilus somnus 129PT 4240326 YP_719045.1 CDS dapB NC_008309.1 911904 912716 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 911904..912716 Haemophilus somnus 129PT 4240327 YP_719046.1 CDS xthA NC_008309.1 912874 913677 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 912874..913677 Haemophilus somnus 129PT 4240328 YP_719047.1 CDS HS_0837 NC_008309.1 913616 914467 D hypothetical protein 913616..914467 Haemophilus somnus 129PT 4240329 YP_719048.1 CDS aspC NC_008309.1 914522 915712 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(914522..915712) Haemophilus somnus 129PT 4240330 YP_719049.1 CDS purK NC_008309.1 915857 916945 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(915857..916945) Haemophilus somnus 129PT 4240331 YP_719050.1 CDS cah NC_008309.1 916988 917680 R carbonic anhydrase complement(916988..917680) Haemophilus somnus 129PT 4240332 YP_719051.1 CDS sohB NC_008309.1 917847 918890 D SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 917847..918890 Haemophilus somnus 129PT 4240333 YP_719052.1 CDS HS_0842 NC_008309.1 919074 919895 D outer membrane protein 919074..919895 Haemophilus somnus 129PT 4240334 YP_719053.1 CDS HS_0843 NC_008309.1 919946 920950 R fructosamine kinase complement(919946..920950) Haemophilus somnus 129PT 4240335 YP_719054.1 CDS thrS NC_008309.1 921208 923136 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 921208..923136 Haemophilus somnus 129PT 4240336 YP_719055.1 CDS HS_0845 NC_008309.1 923192 924040 R hypothetical protein complement(923192..924040) Haemophilus somnus 129PT 4240337 YP_719056.1 CDS HS_0846 NC_008309.1 924377 925687 D xanthine/uracil family permease 924377..925687 Haemophilus somnus 129PT 4240338 YP_719057.1 CDS HS_0847 NC_008309.1 925768 926304 D hypothetical protein 925768..926304 Haemophilus somnus 129PT 4240339 YP_719058.1 CDS HS_0848 NC_008309.1 926305 927234 D multidrug ABC transporter ATP-binding protein 926305..927234 Haemophilus somnus 129PT 4240340 YP_719059.1 CDS HS_0849 NC_008309.1 927234 927998 D multidrug ABC transporter permease 927234..927998 Haemophilus somnus 129PT 4240341 YP_719060.1 CDS HS_0850 NC_008309.1 928108 929490 R hypothetical protein complement(928108..929490) Haemophilus somnus 129PT 4240342 YP_719061.1 CDS queF NC_008309.1 929503 930342 R catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(929503..930342) Haemophilus somnus 129PT 4240343 YP_719062.1 CDS HS_0852 NC_008309.1 930358 931146 R hypothetical protein complement(930358..931146) Haemophilus somnus 129PT 4240344 YP_719063.1 CDS HS_0853 NC_008309.1 931232 931546 D hypothetical protein 931232..931546 Haemophilus somnus 129PT 4240345 YP_719064.1 CDS truC NC_008309.1 931549 932253 D catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 931549..932253 Haemophilus somnus 129PT 4240346 YP_719065.1 CDS HS_0855 NC_008309.1 932247 932447 D hypothetical protein 932247..932447 Haemophilus somnus 129PT 4240347 YP_719066.1 CDS cspD NC_008309.1 932597 932806 D cold-shock DNA-binding protein family protein 932597..932806 Haemophilus somnus 129PT 4240348 YP_719067.1 CDS HS_0857 NC_008309.1 932878 933324 R hypothetical protein complement(932878..933324) Haemophilus somnus 129PT 4240349 YP_719068.1 CDS HS_0858 NC_008309.1 933476 935287 D ATP-dependent Lon protease 933476..935287 Haemophilus somnus 129PT 4240350 YP_719069.1 CDS pheS NC_008309.1 935382 936371 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 935382..936371 Haemophilus somnus 129PT 4240351 YP_719070.1 CDS HS_0860 NC_008309.1 936386 936865 D hypothetical protein 936386..936865 Haemophilus somnus 129PT 4240352 YP_719071.1 CDS pheT NC_008309.1 936880 939267 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 936880..939267 Haemophilus somnus 129PT 4240353 YP_719072.1 CDS ihfA NC_008309.1 939270 939563 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 939270..939563 Haemophilus somnus 129PT 4240354 YP_719073.1 CDS HS_0863 NC_008309.1 939707 940651 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(939707..940651) Haemophilus somnus 129PT 4240355 YP_719074.1 CDS kicB NC_008309.1 940859 942181 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 940859..942181 Haemophilus somnus 129PT 4240356 YP_719075.1 CDS kicA NC_008309.1 942248 942991 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 942248..942991 Haemophilus somnus 129PT 4240357 YP_719076.1 CDS mukB NC_008309.1 943114 947520 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 943114..947520 Haemophilus somnus 129PT 4240358 YP_719077.1 CDS HS_0867 NC_008309.1 947677 948531 D permease 947677..948531 Haemophilus somnus 129PT 4240359 YP_719078.1 CDS HS_0868 NC_008309.1 948627 948920 D hypothetical protein 948627..948920 Haemophilus somnus 129PT 4240360 YP_719079.1 CDS HS_0869 NC_008309.1 949454 949846 D hypothetical protein 949454..949846 Haemophilus somnus 129PT 4240361 YP_719080.1 CDS HS_0870 NC_008309.1 949941 950996 D hypothetical protein 949941..950996 Haemophilus somnus 129PT 4240362 YP_719081.1 CDS HS_0871 NC_008309.1 951085 951342 D hypothetical protein 951085..951342 Haemophilus somnus 129PT 4240363 YP_719082.1 CDS sbcB NC_008309.1 951474 952934 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 951474..952934 Haemophilus somnus 129PT 4240364 YP_719083.1 CDS rplY NC_008309.1 953614 953901 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(953614..953901) Haemophilus somnus 129PT 4240365 YP_719084.1 CDS HS_0874 NC_008309.1 954122 954727 D hypothetical protein 954122..954727 Haemophilus somnus 129PT 4240366 YP_719085.1 CDS rplT NC_008309.1 954900 955253 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(954900..955253) Haemophilus somnus 129PT 4240367 YP_719086.1 CDS rpmI NC_008309.1 955324 955521 R 50S ribosomal protein L35 complement(955324..955521) Haemophilus somnus 129PT 4240368 YP_719087.1 CDS infC NC_008309.1 955620 956099 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(955620..956099) Haemophilus somnus 129PT 4240369 YP_719088.1 CDS fnr NC_008309.1 956523 957296 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 956523..957296 Haemophilus somnus 129PT 4240370 YP_719089.1 CDS uspE NC_008309.1 957447 958370 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 957447..958370 Haemophilus somnus 129PT 4240371 YP_719090.1 CDS folC NC_008309.1 958415 959746 R folylpolyglutamate synthase complement(958415..959746) Haemophilus somnus 129PT 4240372 YP_719091.1 CDS accD NC_008309.1 959736 960635 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(959736..960635) Haemophilus somnus 129PT 4240373 YP_719092.1 CDS usg NC_008309.1 960720 961664 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(960720..961664) Haemophilus somnus 129PT 4240374 YP_719093.1 CDS trpH NC_008309.1 961769 962578 R TrpH protein complement(961769..962578) Haemophilus somnus 129PT 4240375 YP_719094.1 CDS pepN NC_008309.1 962676 965285 R aminopeptidase N complement(962676..965285) Haemophilus somnus 129PT 4240376 YP_719095.1 CDS glgP NC_008309.1 965394 967853 R glycogen phosphorylase complement(965394..967853) Haemophilus somnus 129PT 4240377 YP_719096.1 CDS glgA NC_008309.1 967975 969414 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(967975..969414) Haemophilus somnus 129PT 4240378 YP_719097.1 CDS glgC NC_008309.1 969484 970794 R catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase complement(969484..970794) Haemophilus somnus 129PT 4240379 YP_719098.1 CDS glgX NC_008309.1 970853 972835 R glycogen operon protein complement(970853..972835) Haemophilus somnus 129PT 4240380 YP_719099.1 CDS glgB NC_008309.1 972861 975284 R 1,4-alpha-glucan branching enzyme complement(972861..975284) Haemophilus somnus 129PT 4240381 YP_719100.1 CDS malQ NC_008309.1 975296 977395 R 4-alpha-glucanotransferase complement(975296..977395) Haemophilus somnus 129PT 4240382 YP_719101.1 CDS HS_0891 NC_008309.1 977505 977972 R hypothetical protein complement(977505..977972) Haemophilus somnus 129PT 4240383 YP_719102.1 CDS pqqL NC_008309.1 978062 980845 R zinc protease complement(978062..980845) Haemophilus somnus 129PT 4240384 YP_719103.1 CDS HS_0893 NC_008309.1 980845 981645 R hypothetical protein complement(980845..981645) Haemophilus somnus 129PT 4240385 YP_719104.1 CDS HS_0894 NC_008309.1 981768 983234 R hypothetical protein complement(981768..983234) Haemophilus somnus 129PT 4240386 YP_719105.1 CDS glnS NC_008309.1 983429 985075 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(983429..985075) Haemophilus somnus 129PT 4240387 YP_719106.1 CDS HS_0896 NC_008309.1 985301 986245 D hypothetical protein 985301..986245 Haemophilus somnus 129PT 4240388 YP_719107.1 CDS ttrA NC_008309.1 986232 989321 R tetrathionate reductase subunit A complement(986232..989321) Haemophilus somnus 129PT 4240389 YP_719108.1 CDS ttrC NC_008309.1 989314 990342 R tetrathionate reductase subunit C complement(989314..990342) Haemophilus somnus 129PT 4240390 YP_719109.1 CDS ttrB NC_008309.1 990339 991076 R tetrathionate reductase subunit B complement(990339..991076) Haemophilus somnus 129PT 4240391 YP_719110.1 CDS ttrS NC_008309.1 991289 992986 D sensor kinase 991289..992986 Haemophilus somnus 129PT 4240392 YP_719111.1 CDS ttrR NC_008309.1 992988 993578 D two component response regulator 992988..993578 Haemophilus somnus 129PT 4240393 YP_719112.1 CDS thiI NC_008309.1 993618 995072 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(993618..995072) Haemophilus somnus 129PT 4240394 YP_719113.1 CDS xseB NC_008309.1 995253 995513 D exodeoxyribonuclease VII small subunit 995253..995513 Haemophilus somnus 129PT 4240395 YP_719114.1 CDS ispA NC_008309.1 995529 996419 D farnesyl-diphosphate synthase 995529..996419 Haemophilus somnus 129PT 4240396 YP_719115.1 CDS dxs NC_008309.1 996452 998305 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 996452..998305 Haemophilus somnus 129PT 4240397 YP_719116.1 CDS HS_0906 NC_008309.1 998563 999471 D permease 998563..999471 Haemophilus somnus 129PT 4240398 YP_719117.1 CDS fabA NC_008309.1 999657 1000175 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 999657..1000175 Haemophilus somnus 129PT 4240399 YP_719118.1 CDS sppA NC_008309.1 1000290 1002155 R protease IV complement(1000290..1002155) Haemophilus somnus 129PT 4240400 YP_719119.1 CDS HS_0909 NC_008309.1 1002283 1002837 D nitroreductase 1002283..1002837 Haemophilus somnus 129PT 4240401 YP_719120.1 CDS folE NC_008309.1 1002903 1003559 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1002903..1003559) Haemophilus somnus 129PT 4240402 YP_719121.1 CDS moeA NC_008309.1 1003736 1004920 D molybdopterin molybdochelatase 1003736..1004920 Haemophilus somnus 129PT 4240403 YP_719122.1 CDS moeB NC_008309.1 1004928 1005656 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1004928..1005656 Haemophilus somnus 129PT 4240404 YP_719123.1 CDS purN NC_008309.1 1005729 1006361 R phosphoribosylglycinamide formyltransferase complement(1005729..1006361) Haemophilus somnus 129PT 4240405 YP_719124.1 CDS topA NC_008309.1 1006574 1009180 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1006574..1009180) Haemophilus somnus 129PT 4240406 YP_719125.1 CDS ubiX NC_008309.1 1009461 1010081 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1009461..1010081) Haemophilus somnus 129PT 4240407 YP_719126.1 CDS purF NC_008309.1 1010038 1011552 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1010038..1011552) Haemophilus somnus 129PT 4240408 YP_719127.1 CDS cvpA NC_008309.1 1011565 1012065 R colicin V production protein complement(1011565..1012065) Haemophilus somnus 129PT 4240409 YP_719128.1 CDS HS_0917a NC_008309.1 1012275 1012490 D hypothetical protein 1012275..1012490 Haemophilus somnus 129PT 4240410 YP_719129.1 CDS kpsF NC_008309.1 1012730 1013695 D polysialic acid capsule expression protein, KpsF/GutQ family protein 1012730..1013695 Haemophilus somnus 129PT 4240411 YP_719130.1 CDS kdsC NC_008309.1 1013679 1014251 D 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1013679..1014251 Haemophilus somnus 129PT 4240412 YP_719131.1 CDS ftnA NC_008309.1 1014584 1015069 D ferritin like protein 1 1014584..1015069 Haemophilus somnus 129PT 4240413 YP_719132.1 CDS ftnB NC_008309.1 1015086 1015583 D ferritin like protein 2 1015086..1015583 Haemophilus somnus 129PT 4240414 YP_719133.1 CDS HS_0922 NC_008309.1 1015812 1016567 R DeoR family transcriptional regulator complement(1015812..1016567) Haemophilus somnus 129PT 4240415 YP_719134.1 CDS HS_0923 NC_008309.1 1016671 1017900 R hypothetical protein complement(1016671..1017900) Haemophilus somnus 129PT 4240416 YP_719135.1 CDS kdgT NC_008309.1 1017897 1018895 R transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease complement(1017897..1018895) Haemophilus somnus 129PT 4240417 YP_719136.1 CDS pdxA NC_008309.1 1018906 1019907 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1018906..1019907) Haemophilus somnus 129PT 4240418 YP_719137.1 CDS dat NC_008309.1 1020328 1021692 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1020328..1021692 Haemophilus somnus 129PT 4240419 YP_719138.1 CDS ddc NC_008309.1 1021782 1023317 D L-2,4-diaminobutyrate decarboxylase 1021782..1023317 Haemophilus somnus 129PT 4240420 YP_719139.1 CDS recD NC_008309.1 1023434 1025458 R DNA helicase/exodeoxyribonuclease V subunit alpha complement(1023434..1025458) Haemophilus somnus 129PT 4240421 YP_719140.1 CDS recB NC_008309.1 1025458 1029108 R DNA helicase/exodeoxyribonuclease V subunit beta complement(1025458..1029108) Haemophilus somnus 129PT 4240422 YP_719141.1 CDS htpX NC_008309.1 1029219 1030082 R metalloprotease; heat shock protein HtpX complement(1029219..1030082) Haemophilus somnus 129PT 4240423 YP_719142.1 CDS dinP NC_008309.1 1030168 1031229 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1030168..1031229) Haemophilus somnus 129PT 4240424 YP_719143.1 CDS accA NC_008309.1 1031554 1032507 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1031554..1032507 Haemophilus somnus 129PT 4240425 YP_719144.1 CDS pdxY NC_008309.1 1032576 1033436 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1032576..1033436 Haemophilus somnus 129PT 4240426 YP_719145.1 CDS mesJ NC_008309.1 1033511 1034794 D tRNA(Ile)-lysidine synthetase; cell-cycle protein 1033511..1034794 Haemophilus somnus 129PT 4240427 YP_719146.1 CDS HS_0935 NC_008309.1 1034871 1035302 R hypothetical protein complement(1034871..1035302) Haemophilus somnus 129PT 4240428 YP_719147.1 CDS HS_0936 NC_008309.1 1035431 1036189 D hypothetical protein 1035431..1036189 Haemophilus somnus 129PT 4240429 YP_719148.1 CDS HS_0937 NC_008309.1 1036481 1037227 D hypothetical protein 1036481..1037227 Haemophilus somnus 129PT 4240430 YP_719149.1 CDS pgi NC_008309.1 1037324 1038973 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1037324..1038973) Haemophilus somnus 129PT 4240431 YP_719150.1 CDS alr NC_008309.1 1039001 1040080 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(1039001..1040080) Haemophilus somnus 129PT 4240432 YP_719151.1 CDS dnaB NC_008309.1 1040097 1041515 R unwinds double stranded DNA; replicative DNA helicase complement(1040097..1041515) Haemophilus somnus 129PT 4240433 YP_719152.1 CDS aroG NC_008309.1 1041668 1042747 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1041668..1042747) Haemophilus somnus 129PT 4240434 YP_719153.1 CDS lolE NC_008309.1 1042854 1043969 R part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE complement(1042854..1043969) Haemophilus somnus 129PT 4240435 YP_719154.1 CDS lolD NC_008309.1 1044101 1044784 R lipoprotein releasing system, ATP-binding protein complement(1044101..1044784) Haemophilus somnus 129PT 4240436 YP_719155.1 CDS lolC NC_008309.1 1044805 1045995 R lipoprotein releasing system, transmembrane protein complement(1044805..1045995) Haemophilus somnus 129PT 4240437 YP_719156.1 CDS ldhA NC_008309.1 1046165 1047106 R Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase complement(1046165..1047106) Haemophilus somnus 129PT 4240438 YP_719157.1 CDS kdsA NC_008309.1 1047218 1048072 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1047218..1048072) Haemophilus somnus 129PT 4240439 YP_719158.1 CDS HS_0947 NC_008309.1 1048086 1048880 R hypothetical protein complement(1048086..1048880) Haemophilus somnus 129PT 4240440 YP_719159.1 CDS hemK NC_008309.1 1048864 1049769 R peptide release factor glutamine N(5)-methylase complement(1048864..1049769) Haemophilus somnus 129PT 4240441 YP_719160.1 CDS HS_0949 NC_008309.1 1049784 1050275 R hypothetical protein complement(1049784..1050275) Haemophilus somnus 129PT 4240442 YP_719161.1 CDS prfA NC_008309.1 1050327 1051409 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1050327..1051409) Haemophilus somnus 129PT 4240443 YP_719162.1 CDS HS_0951 NC_008309.1 1051572 1051799 R hypothetical protein complement(1051572..1051799) Haemophilus somnus 129PT 4240444 YP_719163.1 CDS pcp NC_008309.1 1051914 1052375 R outer membrane lipoprotein pcp precursor complement(1051914..1052375) Haemophilus somnus 129PT 4240445 YP_719164.1 CDS HS_0953 NC_008309.1 1052399 1052722 R hypothetical protein complement(1052399..1052722) Haemophilus somnus 129PT 4240446 YP_719165.1 CDS HS_0954 NC_008309.1 1052728 1053315 R hypothetical protein complement(1052728..1053315) Haemophilus somnus 129PT 4240447 YP_719166.1 CDS argS NC_008309.1 1053399 1055132 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1053399..1055132 Haemophilus somnus 129PT 4240448 YP_719167.1 CDS sucD NC_008309.1 1055206 1056078 R succinyl-CoA synthetase (ADP-forming) subunit alpha complement(1055206..1056078) Haemophilus somnus 129PT 4240449 YP_719168.1 CDS sucC NC_008309.1 1056078 1057247 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1056078..1057247) Haemophilus somnus 129PT 4240450 YP_719169.1 CDS sucB NC_008309.1 1057301 1058524 R 2-oxoglutarate dehydrogenase E2 component complement(1057301..1058524) Haemophilus somnus 129PT 4240451 YP_719170.1 CDS sucA NC_008309.1 1058613 1061408 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1058613..1061408) Haemophilus somnus 129PT 4240452 YP_719171.1 CDS gltA NC_008309.1 1061754 1063037 D citrate synthase 1061754..1063037 Haemophilus somnus 129PT 4240453 YP_719172.1 CDS nrdB NC_008309.1 1063175 1064305 D B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1063175..1064305 Haemophilus somnus 129PT 4240454 YP_719173.1 CDS HS_0962 NC_008309.1 1064371 1064628 D ferredoxin, 2Fe-2S type 1064371..1064628 Haemophilus somnus 129PT 4240455 YP_719174.1 CDS nhaA NC_008309.1 1064682 1065869 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(1064682..1065869) Haemophilus somnus 129PT 4240456 YP_719175.1 CDS dgt NC_008309.1 1066056 1067402 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1066056..1067402) Haemophilus somnus 129PT 4240457 YP_719176.1 CDS HS_0965 NC_008309.1 1067418 1067642 R hypothetical protein complement(1067418..1067642) Haemophilus somnus 129PT 4240458 YP_719177.1 CDS HS_0966 NC_008309.1 1067518 1068075 D nuclease 1067518..1068075 Haemophilus somnus 129PT 4240459 YP_719178.1 CDS csd NC_008309.1 1068065 1069264 D cysteine desulfurase, aminotransferase, class V 1068065..1069264 Haemophilus somnus 129PT 4240460 YP_719179.1 CDS HS_0968 NC_008309.1 1069261 1069641 D hypothetical protein 1069261..1069641 Haemophilus somnus 129PT 4240461 YP_719180.1 CDS relB NC_008309.1 1070099 1070389 D RelB protein 1070099..1070389 Haemophilus somnus 129PT 4240462 YP_719181.1 CDS HS_0970 NC_008309.1 1070328 1070642 D hypothetical protein 1070328..1070642 Haemophilus somnus 129PT 4240463 YP_719182.1 CDS ompH NC_008309.1 1070718 1071668 R ompH family outer membrane protein complement(1070718..1071668) Haemophilus somnus 129PT 4240464 YP_719183.1 CDS yciH NC_008309.1 1071929 1072246 R translation initiation factor 1 (eIF-1/SUI1) complement(1071929..1072246) Haemophilus somnus 129PT 4240465 YP_719184.1 CDS HS_0973 NC_008309.1 1072426 1073622 R tetratricopeptide repeat protein complement(1072426..1073622) Haemophilus somnus 129PT 4240466 YP_719185.1 CDS HS_0974 NC_008309.1 1073632 1073916 R hypothetical protein complement(1073632..1073916) Haemophilus somnus 129PT 4240467 YP_719186.1 CDS ihfB NC_008309.1 1074036 1074320 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(1074036..1074320) Haemophilus somnus 129PT 4240468 YP_719187.1 CDS rpsA NC_008309.1 1074384 1076027 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1074384..1076027) Haemophilus somnus 129PT 4240469 YP_719188.1 CDS cmkA NC_008309.1 1076100 1076813 R cytidylate kinase complement(1076100..1076813) Haemophilus somnus 129PT 4240470 YP_719189.1 CDS lpxD NC_008309.1 1076866 1077891 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1076866..1077891) Haemophilus somnus 129PT 4240471 YP_719190.1 CDS skp NC_008309.1 1077891 1078475 R outer membrane protein complement(1077891..1078475) Haemophilus somnus 129PT 4240472 YP_719191.1 CDS HS_0980 NC_008309.1 1078572 1080980 R surface antigen complement(1078572..1080980) Haemophilus somnus 129PT 4240473 YP_719192.1 CDS HS_0981 NC_008309.1 1081049 1082380 R peptidase RseP complement(1081049..1082380) Haemophilus somnus 129PT 4240474 YP_719193.1 CDS cdsA NC_008309.1 1082389 1083252 R phosphatidate cytidylyltransferase complement(1082389..1083252) Haemophilus somnus 129PT 4240475 YP_719194.1 CDS uppS NC_008309.1 1083265 1083990 R UDP pyrophosphate synthetase complement(1083265..1083990) Haemophilus somnus 129PT 4240476 YP_719195.1 CDS HS_0984 NC_008309.1 1084172 1084678 R hypothetical protein complement(1084172..1084678) Haemophilus somnus 129PT 4240477 YP_719196.1 CDS dxr NC_008309.1 1084680 1085888 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1084680..1085888) Haemophilus somnus 129PT 4240478 YP_719197.1 CDS frr NC_008309.1 1085959 1086516 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(1085959..1086516) Haemophilus somnus 129PT 4240479 YP_719198.1 CDS pyrH NC_008309.1 1086570 1087286 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1086570..1087286) Haemophilus somnus 129PT 4240480 YP_719199.1 CDS HS_0988 NC_008309.1 1087385 1087693 R hypothetical protein complement(1087385..1087693) Haemophilus somnus 129PT 4240481 YP_719200.1 CDS HS_0989 NC_008309.1 1087797 1088108 D hypothetical protein 1087797..1088108 Haemophilus somnus 129PT 4240482 YP_719201.1 CDS secA NC_008309.1 1088177 1090873 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1088177..1090873 Haemophilus somnus 129PT 4240483 YP_719202.1 CDS mutT NC_008309.1 1090920 1091318 D 7,8-dihydro-8-oxoguanine-triphosphatase 1090920..1091318 Haemophilus somnus 129PT 4240484 YP_719203.1 CDS hrpA NC_008309.1 1091386 1095297 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1091386..1095297) Haemophilus somnus 129PT 4240485 YP_719204.1 CDS HS_0993 NC_008309.1 1095344 1095799 R permease complement(1095344..1095799) Haemophilus somnus 129PT 4240486 YP_719205.1 CDS ppc NC_008309.1 1096112 1098751 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1096112..1098751 Haemophilus somnus 129PT 4240487 YP_719206.1 CDS HS_0995 NC_008309.1 1098855 1099178 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1098855..1099178 Haemophilus somnus 129PT 4240488 YP_719207.1 CDS prs NC_008309.1 1099335 1100282 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1099335..1100282) Haemophilus somnus 129PT 4240489 YP_719208.1 CDS ipk NC_008309.1 1100290 1101231 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(1100290..1101231) Haemophilus somnus 129PT 4240490 YP_719209.1 CDS lolB NC_008309.1 1101231 1101860 R Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB complement(1101231..1101860) Haemophilus somnus 129PT 4240491 YP_719210.1 CDS HS_0999 NC_008309.1 1102038 1102307 D hypothetical protein 1102038..1102307 Haemophilus somnus 129PT 4240492 YP_719211.1 CDS greA NC_008309.1 1102586 1103062 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1102586..1103062 Haemophilus somnus 129PT 4240493 YP_719212.1 CDS HS_1001 NC_008309.1 1103118 1103414 R hypothetical protein complement(1103118..1103414) Haemophilus somnus 129PT 4240494 YP_719213.1 CDS arsC NC_008309.1 1103541 1103891 R arsenate reductase complement(1103541..1103891) Haemophilus somnus 129PT 4240495 YP_719214.1 CDS perM NC_008309.1 1103977 1105029 D permease 1103977..1105029 Haemophilus somnus 129PT 4240496 YP_719215.1 CDS HS_1004 NC_008309.1 1105109 1106497 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 1105109..1106497 Haemophilus somnus 129PT 4240497 YP_719216.1 CDS HS_1005 NC_008309.1 1106463 1106660 R hypothetical protein complement(1106463..1106660) Haemophilus somnus 129PT 4240498 YP_719217.1 CDS cadB NC_008309.1 1107112 1108428 D antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 1107112..1108428 Haemophilus somnus 129PT 4240499 YP_719218.1 CDS cadA NC_008309.1 1108445 1110571 D L-lysine decarboxylase 1108445..1110571 Haemophilus somnus 129PT 4240500 YP_719219.1 CDS lysS NC_008309.1 1110793 1112283 D lysyl-tRNA synthetase 1110793..1112283 Haemophilus somnus 129PT 4240501 YP_719220.1 CDS iciA NC_008309.1 1112316 1113203 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1112316..1113203 Haemophilus somnus 129PT 4240502 YP_719221.1 CDS bioB NC_008309.1 1113463 1114458 R biotin synthase complement(1113463..1114458) Haemophilus somnus 129PT 4240503 YP_719222.1 CDS thiQ NC_008309.1 1114490 1115134 R thiamine ABC transporter ATP-binding protein complement(1114490..1115134) Haemophilus somnus 129PT 4240504 YP_719223.1 CDS thiP NC_008309.1 1115127 1116671 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(1115127..1116671) Haemophilus somnus 129PT 4240505 YP_719224.1 CDS tbpA NC_008309.1 1116733 1117749 R thiamine ABC transporter periplasmic-binding protein complement(1116733..1117749) Haemophilus somnus 129PT 4240506 YP_719225.1 CDS HS_1014 NC_008309.1 1118086 1119444 D permease 1118086..1119444 Haemophilus somnus 129PT 4240507 YP_719226.1 CDS HS_1015 NC_008309.1 1119492 1120085 D hypothetical protein 1119492..1120085 Haemophilus somnus 129PT 4240508 YP_719227.1 CDS HS_1015a NC_008309.1 1120120 1120293 R hypothetical protein complement(1120120..1120293) Haemophilus somnus 129PT 4240509 YP_719228.1 CDS HS_1016 NC_008309.1 1120294 1120884 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1120294..1120884) Haemophilus somnus 129PT 4240510 YP_719229.1 CDS HS_1017 NC_008309.1 1120952 1121905 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 1120952..1121905 Haemophilus somnus 129PT 4240511 YP_719230.1 CDS HS_1018 NC_008309.1 1121905 1122504 D in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 1121905..1122504 Haemophilus somnus 129PT 4240512 YP_719231.1 CDS HS_1019 NC_008309.1 1122606 1123907 R permease complement(1122606..1123907) Haemophilus somnus 129PT 4240513 YP_719232.1 CDS rlmL NC_008309.1 1124740 1126896 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(1124740..1126896) Haemophilus somnus 129PT 4240518 YP_719233.1 CDS msbA NC_008309.1 1126942 1128690 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease complement(1126942..1128690) Haemophilus somnus 129PT 4240519 YP_719234.1 CDS rec2 NC_008309.1 1128741 1131167 R recombination protein 2 complement(1128741..1131167) Haemophilus somnus 129PT 4240520 YP_719235.1 CDS dksA NC_008309.1 1131493 1131903 D DnaK suppressor protein 1131493..1131903 Haemophilus somnus 129PT 4240521 YP_719236.1 CDS pcnB NC_008309.1 1132205 1133578 D poly(A) polymerase 1132205..1133578 Haemophilus somnus 129PT 4240522 YP_719237.1 CDS folK NC_008309.1 1133575 1134051 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1133575..1134051 Haemophilus somnus 129PT 4240523 YP_719238.1 CDS nagA NC_008309.1 1134150 1135298 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(1134150..1135298) Haemophilus somnus 129PT 4240524 YP_719239.1 CDS nagB NC_008309.1 1135311 1136117 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(1135311..1136117) Haemophilus somnus 129PT 4240525 YP_719240.1 CDS moaE NC_008309.1 1136349 1136801 R molybdopterin synthase subunit MoaE complement(1136349..1136801) Haemophilus somnus 129PT 4240526 YP_719241.1 CDS moaD NC_008309.1 1136802 1137047 R catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit complement(1136802..1137047) Haemophilus somnus 129PT 4240527 YP_719242.1 CDS moaC NC_008309.1 1137069 1137545 R GTP cyclohydrolase subunit MoaC complement(1137069..1137545) Haemophilus somnus 129PT 4240528 YP_719243.1 CDS moaA NC_008309.1 1137555 1138571 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1137555..1138571) Haemophilus somnus 129PT 4240529 YP_719244.1 CDS purR NC_008309.1 1138843 1139844 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1138843..1139844 Haemophilus somnus 129PT 4240530 YP_719245.1 CDS cysB NC_008309.1 1139894 1140865 R LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB complement(1139894..1140865) Haemophilus somnus 129PT 4240531 YP_719246.1 CDS HS_1034 NC_008309.1 1140927 1141253 R glutaredoxin-like protein complement(1140927..1141253) Haemophilus somnus 129PT 4240532 YP_719247.1 CDS hagA NC_008309.1 1141355 1142422 R hemagglutinin antigen complement(1141355..1142422) Haemophilus somnus 129PT 4240533 YP_719248.1 CDS HS_1036 NC_008309.1 1142526 1143902 R metalloprotease complement(1142526..1143902) Haemophilus somnus 129PT 4240534 YP_719249.1 CDS znuC NC_008309.1 1144091 1144885 D high-affinity zinc uptake system, ATP-binding protein 1144091..1144885 Haemophilus somnus 129PT 4240535 YP_719250.1 CDS znuB NC_008309.1 1144895 1145680 D high-affinity zinc uptake system, membrane protein 1144895..1145680 Haemophilus somnus 129PT 4240536 YP_719251.1 CDS HS_1039 NC_008309.1 1145754 1147193 R possible sodium/alanine symporter family; amino acid carrier protein complement(1145754..1147193) Haemophilus somnus 129PT 4240537 YP_719252.1 CDS HS_1040 NC_008309.1 1147178 1147396 R hypothetical protein complement(1147178..1147396) Haemophilus somnus 129PT 4240538 YP_719253.1 CDS HS_1041 NC_008309.1 1147365 1148282 R catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase complement(1147365..1148282) Haemophilus somnus 129PT 4240539 YP_719254.1 CDS pgpB NC_008309.1 1148318 1149055 R phosphatidylglycerophosphatase complement(1148318..1149055) Haemophilus somnus 129PT 4240540 YP_719255.1 CDS ribA NC_008309.1 1149148 1149798 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1149148..1149798 Haemophilus somnus 129PT 4240541 YP_719256.1 CDS HS_1044 NC_008309.1 1149951 1153046 D hypothetical protein 1149951..1153046 Haemophilus somnus 129PT 4240542 YP_719257.1 CDS HS_1045 NC_008309.1 1153063 1153485 D hypothetical protein 1153063..1153485 Haemophilus somnus 129PT 4240543 YP_719258.1 CDS HS_1046 NC_008309.1 1153580 1154095 D permease 1153580..1154095 Haemophilus somnus 129PT 4240544 YP_719259.1 CDS hemH NC_008309.1 1153936 1155066 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1153936..1155066 Haemophilus somnus 129PT 4240545 YP_719260.1 CDS potD NC_008309.1 1155218 1156255 D spermidine/putrescine-binding periplasmic protein 1155218..1156255 Haemophilus somnus 129PT 4240546 YP_719261.1 CDS degS NC_008309.1 1156362 1157408 R DegS serine peptidase complement(1156362..1157408) Haemophilus somnus 129PT 4240547 YP_719262.1 CDS ribD NC_008309.1 1157428 1158558 R diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1157428..1158558) Haemophilus somnus 129PT 4240548 YP_719263.1 CDS nrdR NC_008309.1 1158561 1159010 R transcriptional regulator NrdR complement(1158561..1159010) Haemophilus somnus 129PT 4240549 YP_719264.1 CDS azlD NC_008309.1 1159157 1159453 R branched chain amino acid ABC transporter complement(1159157..1159453) Haemophilus somnus 129PT 4240550 YP_719265.1 CDS azlC NC_008309.1 1159497 1160228 R branched chain amino acid ABC transporter complement(1159497..1160228) Haemophilus somnus 129PT 4240551 YP_719266.1 CDS metR NC_008309.1 1160236 1161162 R transcriptional regulator complement(1160236..1161162) Haemophilus somnus 129PT 4240552 YP_719267.1 CDS mdh NC_008309.1 1161299 1162234 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(1161299..1162234) Haemophilus somnus 129PT 4240553 YP_719268.1 CDS argR NC_008309.1 1162457 1162924 D regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1162457..1162924 Haemophilus somnus 129PT 4240554 YP_719269.1 CDS HS_1057 NC_008309.1 1162946 1163833 D hypothetical protein 1162946..1163833 Haemophilus somnus 129PT 4240555 YP_719270.1 CDS HS_1058 NC_008309.1 1163918 1172638 R large adhesin complement(1163918..1172638) Haemophilus somnus 129PT 4240556 YP_719271.1 CDS rnfA NC_008309.1 1173363 1173944 D Na(+)-translocating NADH-quinone reductase subunit E 1173363..1173944 Haemophilus somnus 129PT 4240557 YP_719272.1 CDS rnfB NC_008309.1 1173948 1174538 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1173948..1174538 Haemophilus somnus 129PT 4240558 YP_719273.1 CDS rnfC NC_008309.1 1174542 1176521 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1174542..1176521 Haemophilus somnus 129PT 4240559 YP_719274.1 CDS rnfD NC_008309.1 1176538 1177629 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1176538..1177629 Haemophilus somnus 129PT 4240560 YP_719275.1 CDS rnfG NC_008309.1 1177626 1178249 D part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1177626..1178249 Haemophilus somnus 129PT 4240561 YP_719276.1 CDS rnfE NC_008309.1 1178306 1178962 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 1178306..1178962 Haemophilus somnus 129PT 4240562 YP_719277.1 CDS nth NC_008309.1 1178959 1179594 D endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 1178959..1179594 Haemophilus somnus 129PT 4240563 YP_719278.1 CDS HS_1066 NC_008309.1 1179629 1180993 D sodium-dependent transporter 1179629..1180993 Haemophilus somnus 129PT 4240564 YP_719279.1 CDS HS_1067 NC_008309.1 1181208 1181792 D hypothetical protein 1181208..1181792 Haemophilus somnus 129PT 4240566 YP_719280.1 CDS HS_1068 NC_008309.1 1181872 1184517 R hypothetical protein complement(1181872..1184517) Haemophilus somnus 129PT 4240567 YP_719281.1 CDS HS_1069 NC_008309.1 1184495 1185748 R hypothetical protein complement(1184495..1185748) Haemophilus somnus 129PT 4240568 YP_719282.1 CDS proQ NC_008309.1 1185960 1186595 D affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1185960..1186595 Haemophilus somnus 129PT 4240569 YP_719283.1 CDS prc NC_008309.1 1186675 1188702 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1186675..1188702 Haemophilus somnus 129PT 4240570 YP_719284.1 CDS HS_1072 NC_008309.1 1188767 1190194 D hypothetical protein 1188767..1190194 Haemophilus somnus 129PT 4240571 YP_719285.1 CDS HS_1073 NC_008309.1 1190271 1190834 D hypothetical protein 1190271..1190834 Haemophilus somnus 129PT 4240572 YP_719286.1 CDS HS_1074 NC_008309.1 1190910 1191542 D glyoxalase II family protein 1190910..1191542 Haemophilus somnus 129PT 4240573 YP_719287.1 CDS serS NC_008309.1 1191644 1192933 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1191644..1192933 Haemophilus somnus 129PT 4240574 YP_719288.1 CDS metX NC_008309.1 1192980 1194053 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(1192980..1194053) Haemophilus somnus 129PT 4240575 YP_719289.1 CDS sanA NC_008309.1 1194241 1194936 D SanA protein 1194241..1194936 Haemophilus somnus 129PT 4240576 YP_719290.1 CDS HS_1078 NC_008309.1 1195690 1196661 D sodium/calcium exchange protein 1195690..1196661 Haemophilus somnus 129PT 4240578 YP_719291.1 CDS HS_1079 NC_008309.1 1196682 1197689 R permease complement(1196682..1197689) Haemophilus somnus 129PT 4240579 YP_719292.1 CDS HS_1080 NC_008309.1 1197680 1198321 R hypothetical protein complement(1197680..1198321) Haemophilus somnus 129PT 4240580 YP_719293.1 CDS HS_1081 NC_008309.1 1198553 1199023 D ATPase 1198553..1199023 Haemophilus somnus 129PT 4240581 YP_719294.1 CDS amiB NC_008309.1 1199027 1200229 D N-acetylmuramoyl-L-alanine amidase 1199027..1200229 Haemophilus somnus 129PT 4240582 YP_719295.1 CDS mutL NC_008309.1 1200245 1202092 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1200245..1202092 Haemophilus somnus 129PT 4240583 YP_719296.1 CDS miaA NC_008309.1 1202089 1203024 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1202089..1203024 Haemophilus somnus 129PT 4240584 YP_719297.1 CDS HS_1085 NC_008309.1 1203500 1214713 D large adhesin 1203500..1214713 Haemophilus somnus 129PT 4240585 YP_719298.1 CDS pykA NC_008309.1 1214992 1216431 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1214992..1216431 Haemophilus somnus 129PT 4240586 YP_719299.1 CDS ppiD NC_008309.1 1216722 1218578 D peptidyl-prolyl cis-trans isomerase D 1216722..1218578 Haemophilus somnus 129PT 4240587 YP_719300.1 CDS rpsB NC_008309.1 1218833 1219552 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1218833..1219552 Haemophilus somnus 129PT 4240588 YP_719301.1 CDS tsf NC_008309.1 1219675 1220526 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1219675..1220526 Haemophilus somnus 129PT 4240589 YP_719302.1 CDS trpR NC_008309.1 1220700 1221020 R When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor complement(1220700..1221020) Haemophilus somnus 129PT 4240590 YP_719303.1 CDS HS_1091 NC_008309.1 1221334 1222575 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(1221334..1222575) Haemophilus somnus 129PT 4240591 YP_719304.1 CDS impA NC_008309.1 1222834 1223289 D ImpA protein 1222834..1223289 Haemophilus somnus 129PT 4240592 YP_719305.1 CDS lpdA NC_008309.1 1223377 1224801 R E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1223377..1224801) Haemophilus somnus 129PT 4240593 YP_719306.1 CDS aceF NC_008309.1 1224888 1226645 R pyruvate dehydrogenase, E2 complex complement(1224888..1226645) Haemophilus somnus 129PT 4240594 YP_719307.1 CDS aceE NC_008309.1 1226829 1229492 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(1226829..1229492) Haemophilus somnus 129PT 4240595 YP_719308.1 CDS crr NC_008309.1 1229787 1230287 R functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit complement(1229787..1230287) Haemophilus somnus 129PT 4240596 YP_719309.1 CDS ptsI NC_008309.1 1230350 1232077 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(1230350..1232077) Haemophilus somnus 129PT 4240597 YP_719310.1 CDS ptsH NC_008309.1 1232182 1232439 R phosphocarrier protein HPr complement(1232182..1232439) Haemophilus somnus 129PT 4240598 YP_719311.1 CDS engC NC_008309.1 1232662 1233714 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1232662..1233714) Haemophilus somnus 129PT 4240599 YP_719312.1 CDS orn NC_008309.1 1233784 1234338 D 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1233784..1234338 Haemophilus somnus 129PT 4240600 YP_719313.1 CDS amtB NC_008309.1 1235376 1236674 R ammonium transporter complement(1235376..1236674) Haemophilus somnus 129PT 4240602 YP_719314.1 CDS fumC NC_008309.1 1237162 1238556 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1237162..1238556) Haemophilus somnus 129PT 4240603 YP_719315.1 CDS tyrR NC_008309.1 1238763 1239704 D transcriptional regulatory protein 1238763..1239704 Haemophilus somnus 129PT 4240604 YP_719316.1 CDS hflX NC_008309.1 1239721 1241097 R GTP-binding protein HflX complement(1239721..1241097) Haemophilus somnus 129PT 4240605 YP_719317.1 CDS hfq NC_008309.1 1241100 1241390 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(1241100..1241390) Haemophilus somnus 129PT 4240606 YP_719318.1 CDS gor NC_008309.1 1241597 1242967 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(1241597..1242967) Haemophilus somnus 129PT 4240607 YP_719319.1 CDS HS_1107 NC_008309.1 1243057 1243902 R hypothetical protein complement(1243057..1243902) Haemophilus somnus 129PT 4240608 YP_719320.1 CDS ponA NC_008309.1 1243962 1246502 R penicillin-binding protein 1A complement(1243962..1246502) Haemophilus somnus 129PT 4240609 YP_719321.1 CDS comA NC_008309.1 1246627 1247412 D competence protein A 1246627..1247412 Haemophilus somnus 129PT 4240610 YP_719322.1 CDS comB NC_008309.1 1247416 1247955 D competence protein B 1247416..1247955 Haemophilus somnus 129PT 4240611 YP_719323.1 CDS comC NC_008309.1 1247959 1248456 D competence protein C 1247959..1248456 Haemophilus somnus 129PT 4240612 YP_719324.1 CDS comE NC_008309.1 1248472 1249605 D competence protein E 1248472..1249605 Haemophilus somnus 129PT 4240613 YP_719325.1 CDS aroK NC_008309.1 1249823 1250314 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1249823..1250314 Haemophilus somnus 129PT 4240614 YP_719326.1 CDS aroB NC_008309.1 1250334 1251422 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1250334..1251422 Haemophilus somnus 129PT 4240615 YP_719327.1 CDS dam NC_008309.1 1251459 1252292 D DNA adenine methylase Dam 1251459..1252292 Haemophilus somnus 129PT 4240616 YP_719328.1 CDS tpn NC_008309.1 1252323 1252976 R transposase complement(1252323..1252976) Haemophilus somnus 129PT 4240617 YP_719329.1 CDS galU NC_008309.1 1253061 1253972 R UDP-glucose pyrophosphorylase complement(1253061..1253972) Haemophilus somnus 129PT 4240618 YP_719330.1 CDS manB NC_008309.1 1254022 1255386 R phosphomannomutase complement(1254022..1255386) Haemophilus somnus 129PT 4240619 YP_719331.1 CDS HS_1119 NC_008309.1 1255499 1255684 R hypothetical protein complement(1255499..1255684) Haemophilus somnus 129PT 4240620 YP_719332.1 CDS alaS NC_008309.1 1255786 1258410 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1255786..1258410) Haemophilus somnus 129PT 4240621 YP_719333.1 CDS uspA NC_008309.1 1258602 1259027 R universal stress protein A complement(1258602..1259027) Haemophilus somnus 129PT 4240622 YP_719334.1 CDS mazG NC_008309.1 1259016 1260005 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1259016..1260005 Haemophilus somnus 129PT 4240623 YP_719335.1 CDS priA NC_008309.1 1260010 1262202 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1260010..1262202 Haemophilus somnus 129PT 4240624 YP_719336.1 CDS HS_1124 NC_008309.1 1262274 1262948 D cell division protein FtsN 1262274..1262948 Haemophilus somnus 129PT 4240625 YP_719337.1 CDS mreD NC_008309.1 1262974 1263462 R rod shape-determining protein MreD complement(1262974..1263462) Haemophilus somnus 129PT 4240626 YP_719338.1 CDS mreC NC_008309.1 1263462 1264517 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1263462..1264517) Haemophilus somnus 129PT 4240627 YP_719339.1 CDS mreB NC_008309.1 1264599 1265654 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1264599..1265654) Haemophilus somnus 129PT 4240628 YP_719340.1 CDS uvrA NC_008309.1 1265826 1268657 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1265826..1268657) Haemophilus somnus 129PT 4240629 YP_719341.1 CDS ssb NC_008309.1 1268836 1269300 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1268836..1269300 Haemophilus somnus 129PT 4240630 YP_719342.1 CDS metF NC_008309.1 1269387 1270271 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(1269387..1270271) Haemophilus somnus 129PT 4240631 YP_719343.1 CDS HS_1131 NC_008309.1 1270487 1271005 R hypothetical protein complement(1270487..1271005) Haemophilus somnus 129PT 4240632 YP_719344.1 CDS nagZ NC_008309.1 1271025 1272080 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(1271025..1272080) Haemophilus somnus 129PT 4240633 YP_719345.1 CDS HS_1133 NC_008309.1 1272087 1272443 R hypothetical protein complement(1272087..1272443) Haemophilus somnus 129PT 4240634 YP_719346.1 CDS HS_1134 NC_008309.1 1272443 1272793 R HIT-like protein complement(1272443..1272793) Haemophilus somnus 129PT 4240635 YP_719347.1 CDS focA NC_008309.1 1273061 1273888 D formate transporter 1273061..1273888 Haemophilus somnus 129PT 4240636 YP_719348.1 CDS pflB NC_008309.1 1273983 1276307 D formate acetyltransferase 1273983..1276307 Haemophilus somnus 129PT 4240637 YP_719349.1 CDS HS_1137 NC_008309.1 1276442 1276900 D hypothetical protein 1276442..1276900 Haemophilus somnus 129PT 4240638 YP_719350.1 CDS HS_1138 NC_008309.1 1277023 1278126 D hypothetical protein 1277023..1278126 Haemophilus somnus 129PT 4240639 YP_719351.1 CDS HS_1139 NC_008309.1 1278111 1278815 D hypothetical protein 1278111..1278815 Haemophilus somnus 129PT 4240640 YP_719352.1 CDS gatR NC_008309.1 1279077 1279868 R galactitol utilization operon repressor complement(1279077..1279868) Haemophilus somnus 129PT 4240641 YP_719353.1 CDS gatD NC_008309.1 1279962 1281005 R Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase complement(1279962..1281005) Haemophilus somnus 129PT 4240642 YP_719354.1 CDS gatC NC_008309.1 1281019 1282377 R PTS system, galactitol-specific IIC component complement(1281019..1282377) Haemophilus somnus 129PT 4240643 YP_719355.1 CDS gatB NC_008309.1 1282382 1282666 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB complement(1282382..1282666) Haemophilus somnus 129PT 4240644 YP_719356.1 CDS gatA NC_008309.1 1282690 1283136 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA complement(1282690..1283136) Haemophilus somnus 129PT 4240645 YP_719357.1 CDS gatZ NC_008309.1 1283149 1284414 R tagatose-bisphosphate aldolase noncatalytic subunit complement(1283149..1284414) Haemophilus somnus 129PT 4240646 YP_719358.1 CDS lacD NC_008309.1 1284428 1285381 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase complement(1284428..1285381) Haemophilus somnus 129PT 4240647 YP_719359.1 CDS pflA NC_008309.1 1285647 1286387 D activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1285647..1286387 Haemophilus somnus 129PT 4240648 YP_719360.1 CDS trxB NC_008309.1 1286516 1287469 D thioredoxin reductase 1286516..1287469 Haemophilus somnus 129PT 4240649 YP_719361.1 CDS cydD NC_008309.1 1287535 1289298 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1287535..1289298 Haemophilus somnus 129PT 4240650 YP_719362.2 CDS cydC NC_008309.1 1289298 1291028 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1289298..1291028 Haemophilus somnus 129PT 4240651 YP_719363.1 CDS HS_1151 NC_008309.1 1291133 1291474 D hypothetical protein 1291133..1291474 Haemophilus somnus 129PT 4240652 YP_719364.1 CDS HS_1152 NC_008309.1 1291766 1292638 D hypothetical protein 1291766..1292638 Haemophilus somnus 129PT 4240653 YP_719365.1 CDS pgsA NC_008309.1 1292729 1293295 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1292729..1293295 Haemophilus somnus 129PT 4240654 YP_719366.1 CDS HS_1154 NC_008309.1 1293755 1304419 D large adhesin 1293755..1304419 Haemophilus somnus 129PT 4240655 YP_719367.1 CDS HS_1155 NC_008309.1 1304541 1305965 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1304541..1305965) Haemophilus somnus 129PT 4240656 YP_719368.1 CDS ubiF NC_008309.1 1306116 1307282 D 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1306116..1307282 Haemophilus somnus 129PT 4240657 YP_719369.1 CDS potA NC_008309.1 1307441 1308559 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1307441..1308559 Haemophilus somnus 129PT 4240658 YP_719370.1 CDS potB NC_008309.1 1308543 1309403 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1308543..1309403 Haemophilus somnus 129PT 4240659 YP_719371.1 CDS potC NC_008309.1 1309403 1310170 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1309403..1310170 Haemophilus somnus 129PT 4240660 YP_719372.1 CDS potD NC_008309.1 1310334 1311419 D spermidine/putrescine-binding periplasmic protein 1310334..1311419 Haemophilus somnus 129PT 4240661 YP_719373.1 CDS mfd NC_008309.1 1311475 1314906 R transcription-repair coupling factor complement(1311475..1314906) Haemophilus somnus 129PT 4240662 YP_719374.1 CDS ubiG NC_008309.1 1314912 1315628 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(1314912..1315628) Haemophilus somnus 129PT 4240663 YP_719375.1 CDS gyrA NC_008309.1 1315768 1318413 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1315768..1318413 Haemophilus somnus 129PT 4240664 YP_719376.1 CDS HS_1164 NC_008309.1 1318464 1318655 D hypothetical protein 1318464..1318655 Haemophilus somnus 129PT 4240665 YP_719377.1 CDS phnA NC_008309.1 1318777 1319103 D alkylphosphonate uptake protein 1318777..1319103 Haemophilus somnus 129PT 4240666 YP_719378.1 CDS tyrP NC_008309.1 1319140 1320357 D tyrosine-specific transport protein 1319140..1320357 Haemophilus somnus 129PT 4240667 YP_719379.1 CDS murZ NC_008309.1 1320468 1321742 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1320468..1321742) Haemophilus somnus 129PT 4240668 YP_719380.1 CDS HS_1168 NC_008309.1 1321762 1322013 R morphology/transcription regulator BolA family protein complement(1321762..1322013) Haemophilus somnus 129PT 4240669 YP_719381.1 CDS HS_1169 NC_008309.1 1322026 1322358 R hypothetical protein complement(1322026..1322358) Haemophilus somnus 129PT 4240670 YP_719382.1 CDS HS_1170 NC_008309.1 1322362 1322988 R hypothetical protein complement(1322362..1322988) Haemophilus somnus 129PT 4240671 YP_719383.1 CDS HS_1171 NC_008309.1 1323024 1323530 R hypothetical protein complement(1323024..1323530) Haemophilus somnus 129PT 4240672 YP_719384.1 CDS HS_1172 NC_008309.1 1323562 1324347 R ABC transporter permease complement(1323562..1324347) Haemophilus somnus 129PT 4240673 YP_719385.1 CDS HS_1173 NC_008309.1 1324344 1325138 R ABC transporter ATP-binding protein complement(1324344..1325138) Haemophilus somnus 129PT 4240674 YP_719386.1 CDS HS_1174 NC_008309.1 1325313 1325933 D hypothetical protein 1325313..1325933 Haemophilus somnus 129PT 4240675 YP_719387.1 CDS HS_1175 NC_008309.1 1325914 1326432 D hypothetical protein 1325914..1326432 Haemophilus somnus 129PT 4240676 YP_719388.1 CDS HS_1176 NC_008309.1 1326447 1327172 D ABC transporter ATP-binding protein 1326447..1327172 Haemophilus somnus 129PT 4240677 YP_719389.1 CDS ptsN NC_008309.1 1327175 1327735 D nitrogen regulatory IIA protein 1327175..1327735 Haemophilus somnus 129PT 4240678 YP_719390.1 CDS HS_1178 NC_008309.1 1327738 1328598 D hypothetical protein 1327738..1328598 Haemophilus somnus 129PT 4240679 YP_719391.1 CDS metG NC_008309.1 1328634 1330685 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1328634..1330685) Haemophilus somnus 129PT 4240680 YP_719392.1 CDS mrp NC_008309.1 1330827 1331948 D ATPase 1330827..1331948 Haemophilus somnus 129PT 4240681 YP_719393.1 CDS modB NC_008309.1 1331963 1332673 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(1331963..1332673) Haemophilus somnus 129PT 4240682 YP_719394.1 CDS modA NC_008309.1 1332691 1333455 R molybdenum ABC transporter periplasmic binding protein complement(1332691..1333455) Haemophilus somnus 129PT 4240683 YP_719395.1 CDS HS_1183 NC_008309.1 1333477 1334175 R permease complement(1333477..1334175) Haemophilus somnus 129PT 4240684 YP_719396.1 CDS HS_1184 NC_008309.1 1334333 1335121 D hypothetical protein 1334333..1335121 Haemophilus somnus 129PT 4240685 YP_719397.1 CDS HS_1185 NC_008309.1 1335892 1336611 D hypothetical protein 1335892..1336611 Haemophilus somnus 129PT 4240686 YP_719398.1 CDS ftsK NC_008309.1 1336965 1339676 R DNA translocase FtsK complement(1336965..1339676) Haemophilus somnus 129PT 4240687 YP_719399.1 CDS lrp NC_008309.1 1339678 1340154 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(1339678..1340154) Haemophilus somnus 129PT 4240688 YP_719400.1 CDS radA NC_008309.1 1340256 1341632 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1340256..1341632) Haemophilus somnus 129PT 4240689 YP_719401.1 CDS HS_1189 NC_008309.1 1341642 1342685 R hypothetical protein complement(1341642..1342685) Haemophilus somnus 129PT 4240690 YP_719402.1 CDS HS_1190 NC_008309.1 1342828 1343508 D phosphate transport regulator 1342828..1343508 Haemophilus somnus 129PT 4240691 YP_719403.1 CDS HS_1191 NC_008309.1 1343535 1344797 D possible PHO4 family; phosphate permease 1343535..1344797 Haemophilus somnus 129PT 4240692 YP_719404.1 CDS HS_1192 NC_008309.1 1344722 1345513 D hypothetical protein 1344722..1345513 Haemophilus somnus 129PT 4240693 YP_719405.1 CDS cca NC_008309.1 1345518 1346771 D tRNA nucleotidyltransferase 1345518..1346771 Haemophilus somnus 129PT 4240694 YP_719406.1 CDS dnaK NC_008309.1 1346950 1348857 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1346950..1348857 Haemophilus somnus 129PT 4240695 YP_719407.1 CDS dnaJ NC_008309.1 1348955 1350076 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1348955..1350076 Haemophilus somnus 129PT 4240696 YP_719408.1 CDS nrdA NC_008309.1 1350360 1352630 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1350360..1352630 Haemophilus somnus 129PT 4240697 YP_719409.1 CDS pilF NC_008309.1 1352713 1353252 R fimbrial biogenesis and twitching motility protein complement(1352713..1353252) Haemophilus somnus 129PT 4240698 YP_719410.1 CDS HS_1198 NC_008309.1 1353283 1354380 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(1353283..1354380) Haemophilus somnus 129PT 4240699 YP_719411.1 CDS HS_1199 NC_008309.1 1354473 1354667 D hypothetical protein 1354473..1354667 Haemophilus somnus 129PT 4240700 YP_719412.1 CDS dnaX NC_008309.1 1354654 1356657 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1354654..1356657) Haemophilus somnus 129PT 4240701 YP_719413.1 CDS apt NC_008309.1 1356688 1357212 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1356688..1357212) Haemophilus somnus 129PT 4240702 YP_719414.1 CDS msbB NC_008309.1 1357298 1358251 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1357298..1358251) Haemophilus somnus 129PT 4240703 YP_719415.1 CDS HS_1203 NC_008309.1 1358275 1359048 R permease complement(1358275..1359048) Haemophilus somnus 129PT 4240704 YP_719416.1 CDS mepA NC_008309.1 1359057 1359896 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(1359057..1359896) Haemophilus somnus 129PT 4240705 YP_719417.1 CDS aroC NC_008309.1 1359929 1361011 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1359929..1361011) Haemophilus somnus 129PT 4240706 YP_719418.1 CDS HS_1206 NC_008309.1 1361027 1364323 R small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA complement(1361027..1364323) Haemophilus somnus 129PT 4240707 YP_719419.1 CDS menE NC_008309.1 1364326 1365732 R O-succinylbenzoic acid--CoA ligase complement(1364326..1365732) Haemophilus somnus 129PT 4240708 YP_719420.1 CDS seqA NC_008309.1 1365735 1366349 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(1365735..1366349) Haemophilus somnus 129PT 4240709 YP_719421.1 CDS HS_1209 NC_008309.1 1366299 1367234 D esterase/lipase 1366299..1367234 Haemophilus somnus 129PT 4240710 YP_719422.1 CDS fldA NC_008309.1 1367656 1368180 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1367656..1368180 Haemophilus somnus 129PT 4240711 YP_719423.1 CDS fur NC_008309.1 1368197 1368643 D ferric uptake regulation protein 1368197..1368643 Haemophilus somnus 129PT 4240712 YP_719424.1 CDS thrC NC_008309.1 1368815 1370092 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1368815..1370092) Haemophilus somnus 129PT 4240713 YP_719425.1 CDS thrB NC_008309.1 1370105 1371049 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1370105..1371049) Haemophilus somnus 129PT 4240714 YP_719426.1 CDS thrA NC_008309.1 1371062 1373512 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(1371062..1373512) Haemophilus somnus 129PT 4240715 YP_719427.1 CDS HS_1215 NC_008309.1 1373841 1374536 D hypothetical protein 1373841..1374536 Haemophilus somnus 129PT 4240716 YP_719428.1 CDS xseA NC_008309.1 1374589 1375935 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1374589..1375935) Haemophilus somnus 129PT 4240717 YP_719429.1 CDS HS_1217 NC_008309.1 1376111 1376770 R hypothetical protein complement(1376111..1376770) Haemophilus somnus 129PT 4240718 YP_719430.1 CDS glnE NC_008309.1 1376885 1379845 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(1376885..1379845) Haemophilus somnus 129PT 4240719 YP_719431.1 CDS HS_1219 NC_008309.1 1379985 1380269 D hypothetical protein 1379985..1380269 Haemophilus somnus 129PT 4240720 YP_719432.1 CDS int NC_008309.1 1380266 1381126 R integrase complement(1380266..1381126) Haemophilus somnus 129PT 4240721 YP_719433.1 CDS folD NC_008309.1 1381844 1382692 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1381844..1382692 Haemophilus somnus 129PT 4240724 YP_719434.1 CDS HS_1222 NC_008309.1 1382730 1383455 R SAM-dependent methyltransferase complement(1382730..1383455) Haemophilus somnus 129PT 4240725 YP_719435.1 CDS aspS NC_008309.1 1383619 1385376 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1383619..1385376 Haemophilus somnus 129PT 4240726 YP_719436.1 CDS HS_1224 NC_008309.1 1385418 1385618 R hypothetical protein complement(1385418..1385618) Haemophilus somnus 129PT 4240727 YP_719437.1 CDS ycdH NC_008309.1 1385764 1386207 R flavin:NADH reductase complement(1385764..1386207) Haemophilus somnus 129PT 4240728 YP_719438.1 CDS metE NC_008309.1 1386244 1387275 R catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(1386244..1387275) Haemophilus somnus 129PT 4240729 YP_719439.1 CDS HS_1227 NC_008309.1 1387355 1388335 R hypothetical protein complement(1387355..1388335) Haemophilus somnus 129PT 4240730 YP_719440.1 CDS int NC_008309.1 1388586 1389104 R integrase complement(1388586..1389104) Haemophilus somnus 129PT 4240731 YP_719441.1 CDS hemL NC_008309.1 1395605 1396903 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1395605..1396903 Haemophilus somnus 129PT 4240740 YP_719442.1 CDS HS_1230 NC_008309.1 1397066 1397677 R hypothetical protein complement(1397066..1397677) Haemophilus somnus 129PT 4240741 YP_719443.1 CDS HS_1231 NC_008309.1 1397760 1398029 R hypothetical protein complement(1397760..1398029) Haemophilus somnus 129PT 4240742 YP_719444.1 CDS glyQ NC_008309.1 1398029 1398940 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1398029..1398940) Haemophilus somnus 129PT 4240743 YP_719445.1 CDS HS_1233 NC_008309.1 1399053 1399679 R hypothetical protein complement(1399053..1399679) Haemophilus somnus 129PT 4240744 YP_719446.1 CDS HS_1234 NC_008309.1 1400065 1413645 R large adhesin complement(1400065..1413645) Haemophilus somnus 129PT 4240745 YP_719447.1 CDS rpoD NC_008309.1 1414343 1416130 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(1414343..1416130) Haemophilus somnus 129PT 4240746 YP_719448.1 CDS dnaG NC_008309.1 1416275 1418029 R synthesizes RNA primers at the replication forks; DNA primase complement(1416275..1418029) Haemophilus somnus 129PT 4240747 YP_719449.1 CDS rpsU NC_008309.1 1418190 1418405 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1418190..1418405) Haemophilus somnus 129PT 4240748 YP_719450.1 CDS gmhA NC_008309.1 1418590 1419171 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1418590..1419171) Haemophilus somnus 129PT 4240749 YP_719451.1 CDS era NC_008309.1 1419202 1420104 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(1419202..1420104) Haemophilus somnus 129PT 4240750 YP_719452.1 CDS rnc NC_008309.1 1420157 1420840 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1420157..1420840) Haemophilus somnus 129PT 4240751 YP_719453.1 CDS lepB NC_008309.1 1421035 1422066 R signal peptidase I complement(1421035..1422066) Haemophilus somnus 129PT 4240752 YP_719454.1 CDS lepA NC_008309.1 1422077 1423873 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1422077..1423873) Haemophilus somnus 129PT 4240753 YP_719455.1 CDS HS_1243 NC_008309.1 1424054 1425319 R M20/M25/M40 family peptidase complement(1424054..1425319) Haemophilus somnus 129PT 4240754 YP_719456.1 CDS HS_1244 NC_008309.1 1425399 1426691 R C4-dicarboxylate ABC transporter permease complement(1425399..1426691) Haemophilus somnus 129PT 4240755 YP_719457.1 CDS pepE NC_008309.1 1426702 1427406 R alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E complement(1426702..1427406) Haemophilus somnus 129PT 4240756 YP_719458.1 CDS HS_1246 NC_008309.1 1427713 1428369 D hypothetical protein 1427713..1428369 Haemophilus somnus 129PT 4240757 YP_719459.1 CDS HS_1247 NC_008309.1 1428263 1430725 D autotransporter protein YapE 1428263..1430725 Haemophilus somnus 129PT 4240758 YP_719460.1 CDS fbp NC_008309.1 1430933 1431940 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1430933..1431940) Haemophilus somnus 129PT 4240759 YP_719461.1 CDS mpl NC_008309.1 1432081 1433457 D UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl- medo-diaminopimelate 1432081..1433457 Haemophilus somnus 129PT 4240760 YP_719462.1 CDS mtlR NC_008309.1 1433554 1434069 R Acts as a repressor of the mtlAD operon; mannitol repressor protein complement(1433554..1434069) Haemophilus somnus 129PT 4240761 YP_719463.1 CDS mtlD NC_008309.1 1434151 1435302 R mannitol-1-phosphate 5-dehydrogenase complement(1434151..1435302) Haemophilus somnus 129PT 4240762 YP_719464.1 CDS mtlA NC_008309.1 1435375 1437252 R mannitol-specific IIABC component, PTS system complement(1435375..1437252) Haemophilus somnus 129PT 4240763 YP_719465.1 CDS HS_1253 NC_008309.1 1437618 1438526 D catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1437618..1438526 Haemophilus somnus 129PT 4240764 YP_719466.2 CDS mltA NC_008309.1 1438800 1439891 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 1438800..1439891 Haemophilus somnus 129PT 4240765 YP_719467.1 CDS HS_1255 NC_008309.1 1439891 1440658 D hypothetical protein 1439891..1440658 Haemophilus somnus 129PT 4240766 YP_719468.1 CDS znuA NC_008309.1 1440751 1441869 D involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component 1440751..1441869 Haemophilus somnus 129PT 4240767 YP_719469.1 CDS cdd NC_008309.1 1442591 1443502 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1442591..1443502 Haemophilus somnus 129PT 4240768 YP_719470.1 CDS truA NC_008309.1 1443533 1444342 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1443533..1444342 Haemophilus somnus 129PT 4240769 YP_719471.1 CDS valS NC_008309.1 1444398 1447244 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1444398..1447244) Haemophilus somnus 129PT 4240770 YP_719472.1 CDS HS_1260 NC_008309.1 1447281 1448399 R hypothetical protein complement(1447281..1448399) Haemophilus somnus 129PT 4240771 YP_719473.1 CDS HS_1261 NC_008309.1 1448680 1448874 R hypothetical protein complement(1448680..1448874) Haemophilus somnus 129PT 4240772 YP_719474.1 CDS HS_1262 NC_008309.1 1448876 1449625 R hypothetical protein complement(1448876..1449625) Haemophilus somnus 129PT 4240773 YP_719475.1 CDS HS_1263 NC_008309.1 1449789 1450244 R hypothetical protein complement(1449789..1450244) Haemophilus somnus 129PT 4240774 YP_719476.1 CDS holC NC_008309.1 1450266 1450709 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1450266..1450709) Haemophilus somnus 129PT 4240775 YP_719477.1 CDS ompW NC_008309.1 1450879 1451508 R outer membrane protein precursor complement(1450879..1451508) Haemophilus somnus 129PT 4240776 YP_719478.1 CDS HS_1266 NC_008309.1 1451784 1452524 D hypothetical protein 1451784..1452524 Haemophilus somnus 129PT 4240777 YP_719479.1 CDS ispZ NC_008309.1 1452524 1453063 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1452524..1453063 Haemophilus somnus 129PT 4240778 YP_719480.1 CDS yciA NC_008309.1 1453073 1453537 D acyl-CoA hydrolase 1453073..1453537 Haemophilus somnus 129PT 4240779 YP_719481.1 CDS HS_1269 NC_008309.1 1453560 1453856 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1453560..1453856 Haemophilus somnus 129PT 4240780 YP_719482.1 CDS acnB NC_008309.1 1454031 1456637 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1454031..1456637 Haemophilus somnus 129PT 4240781 YP_719483.1 CDS HS_1271 NC_008309.1 1456960 1458546 D ABC transporter periplasmic binding protein 1456960..1458546 Haemophilus somnus 129PT 4240782 YP_719484.1 CDS HS_1272 NC_008309.1 1458684 1459637 D ABC transporter permease component 1458684..1459637 Haemophilus somnus 129PT 4240783 YP_719485.1 CDS HS_1273 NC_008309.1 1459637 1461589 D ABC transporter ATP-binding/permease 1459637..1461589 Haemophilus somnus 129PT 4240784 YP_719486.1 CDS HS_1274 NC_008309.1 1461605 1462399 D ABC transporter ATP-binding protein 1461605..1462399 Haemophilus somnus 129PT 4240785 YP_719487.1 CDS HS_1275 NC_008309.1 1462480 1464066 D FAD flavoprotein oxidase 1462480..1464066 Haemophilus somnus 129PT 4240786 YP_719488.1 CDS lysS NC_008309.1 1464120 1465091 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(1464120..1465091) Haemophilus somnus 129PT 4240787 YP_719489.1 CDS frdA NC_008309.1 1465404 1467203 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1465404..1467203 Haemophilus somnus 129PT 4240788 YP_719490.1 CDS frdB NC_008309.1 1467196 1467966 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1467196..1467966 Haemophilus somnus 129PT 4240789 YP_719491.1 CDS frdC NC_008309.1 1467977 1468381 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 1467977..1468381 Haemophilus somnus 129PT 4240790 YP_719492.1 CDS frdD NC_008309.1 1468392 1468739 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 1468392..1468739 Haemophilus somnus 129PT 4240791 YP_719493.1 CDS HS_1281 NC_008309.1 1468858 1469667 R permease complement(1468858..1469667) Haemophilus somnus 129PT 4240792 YP_719494.1 CDS HS_1282 NC_008309.1 1469974 1471449 R major facilitator superfamily permease complement(1469974..1471449) Haemophilus somnus 129PT 4240793 YP_719495.1 CDS xerD NC_008309.1 1471627 1472520 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(1471627..1472520) Haemophilus somnus 129PT 4240794 YP_719496.1 CDS hcaT NC_008309.1 1472517 1473716 R transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter complement(1472517..1473716) Haemophilus somnus 129PT 4240795 YP_719497.1 CDS proC NC_008309.1 1473717 1474532 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(1473717..1474532) Haemophilus somnus 129PT 4240796 YP_719498.1 CDS rdgC NC_008309.1 1474595 1475500 D Required for efficient pilin antigenic variation; recombination associated protein 1474595..1475500 Haemophilus somnus 129PT 4240797 YP_719499.1 CDS oapA NC_008309.1 1475568 1476776 R opacity associated protein A complement(1475568..1476776) Haemophilus somnus 129PT 4240798 YP_719500.1 CDS HS_1288 NC_008309.1 1476826 1477839 R L-lysine 2,3-aminomutase complement(1476826..1477839) Haemophilus somnus 129PT 4240799 YP_719501.1 CDS efp NC_008309.1 1477875 1478441 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1477875..1478441 Haemophilus somnus 129PT 4240800 YP_719502.1 CDS dusC NC_008309.1 1478488 1479417 R tRNA-dihydrouridine synthase C complement(1478488..1479417) Haemophilus somnus 129PT 4240801 YP_719503.1 CDS djlA NC_008309.1 1479422 1480291 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(1479422..1480291) Haemophilus somnus 129PT 4240802 YP_719504.1 CDS rph NC_008309.1 1480384 1481100 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(1480384..1481100) Haemophilus somnus 129PT 4240803 YP_719505.1 CDS HS_1293 NC_008309.1 1481221 1482084 D hypothetical protein 1481221..1482084 Haemophilus somnus 129PT 4240804 YP_719506.1 CDS HS_1294 NC_008309.1 1482093 1482926 D aminomethyl transferase 1482093..1482926 Haemophilus somnus 129PT 4240805 YP_719507.1 CDS srmB NC_008309.1 1482970 1484295 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1482970..1484295) Haemophilus somnus 129PT 4240806 YP_719508.1 CDS HS_1296 NC_008309.1 1484389 1485099 D SAM-dependent methyltransferase 1484389..1485099 Haemophilus somnus 129PT 4240807 YP_719509.1 CDS HS_1297 NC_008309.1 1485116 1485694 R acyl-phosphate glycerol-3-phosphate acyltransferase complement(1485116..1485694) Haemophilus somnus 129PT 4240808 YP_719510.1 CDS folB NC_008309.1 1485793 1486161 D dihydroneopterin aldolase 1485793..1486161 Haemophilus somnus 129PT 4240809 YP_719511.1 CDS xerC NC_008309.1 1486210 1487085 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(1486210..1487085) Haemophilus somnus 129PT 4240810 YP_719512.1 CDS psd NC_008309.1 1487393 1488277 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1487393..1488277 Haemophilus somnus 129PT 4240811 YP_719513.1 CDS fklB NC_008309.1 1488304 1488936 D FKBP-type peptidyl-prolyl cis-trans isomerase 1488304..1488936 Haemophilus somnus 129PT 4240812 YP_719514.1 CDS HS_1302 NC_008309.1 1489174 1491093 D ABC transporter ATP-binding protein 1489174..1491093 Haemophilus somnus 129PT 4240813 YP_719515.1 CDS recA NC_008309.1 1491217 1492284 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1491217..1492284 Haemophilus somnus 129PT 4240814 YP_719516.1 CDS recX NC_008309.1 1492393 1492857 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1492393..1492857 Haemophilus somnus 129PT 4240815 YP_719517.1 CDS proS NC_008309.1 1492960 1494675 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1492960..1494675 Haemophilus somnus 129PT 4240816 YP_719518.1 CDS frpB NC_008309.1 1494813 1496891 D iron-regulated outer membrane protein 1494813..1496891 Haemophilus somnus 129PT 4240817 YP_719519.1 CDS tyrS NC_008309.1 1497083 1498270 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1497083..1498270 Haemophilus somnus 129PT 4240818 YP_719520.1 CDS recR NC_008309.1 1498316 1498921 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1498316..1498921) Haemophilus somnus 129PT 4240819 YP_719521.1 CDS HS_1309 NC_008309.1 1498984 1499313 R hypothetical protein complement(1498984..1499313) Haemophilus somnus 129PT 4240820 YP_719522.1 CDS topB NC_008309.1 1499439 1501337 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1499439..1501337 Haemophilus somnus 129PT 4240821 YP_719523.1 CDS secG NC_008309.1 1501475 1501819 D preprotein translocase subunit SecG 1501475..1501819 Haemophilus somnus 129PT 4240822 YP_719524.1 CDS secF NC_008309.1 1502393 1503334 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1502393..1503334) Haemophilus somnus 129PT 4240824 YP_719525.1 CDS secD NC_008309.1 1503374 1505224 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1503374..1505224) Haemophilus somnus 129PT 4240825 YP_719526.1 CDS yajC NC_008309.1 1505256 1505525 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1505256..1505525) Haemophilus somnus 129PT 4240826 YP_719527.1 CDS tgt NC_008309.1 1505711 1506841 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1505711..1506841) Haemophilus somnus 129PT 4240827 YP_719528.1 CDS queA NC_008309.1 1506892 1507962 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(1506892..1507962) Haemophilus somnus 129PT 4240828 YP_719529.1 CDS dctM NC_008309.1 1508094 1509362 R C4-dicarboxylate transport system, large subunit complement(1508094..1509362) Haemophilus somnus 129PT 4240829 YP_719530.1 CDS dctQ NC_008309.1 1509380 1509832 R C4-dicarboxylate transport system, small subunit complement(1509380..1509832) Haemophilus somnus 129PT 4240830 YP_719531.1 CDS dctP NC_008309.1 1509829 1510899 R C4-dicarboxylate transport system, C4-dicarboxylate-binding protein complement(1509829..1510899) Haemophilus somnus 129PT 4240831 YP_719532.1 CDS HS_1320 NC_008309.1 1511236 1511850 R hypothetical protein complement(1511236..1511850) Haemophilus somnus 129PT 4240832 YP_719533.1 CDS HS_1321 NC_008309.1 1512130 1512402 D hypothetical protein 1512130..1512402 Haemophilus somnus 129PT 4240833 YP_719534.1 CDS HS_1322 NC_008309.1 1512411 1512599 D hypothetical protein 1512411..1512599 Haemophilus somnus 129PT 4240834 YP_719535.1 CDS prtC NC_008309.1 1512910 1514286 R possible protease; collagenase prtC complement(1512910..1514286) Haemophilus somnus 129PT 4240835 YP_719536.1 CDS ligA NC_008309.1 1514428 1515237 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(1514428..1515237) Haemophilus somnus 129PT 4240836 YP_719537.1 CDS engA NC_008309.1 1515405 1516940 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1515405..1516940) Haemophilus somnus 129PT 4240837 YP_719538.1 CDS HS_1326 NC_008309.1 1517071 1517604 R hypothetical protein complement(1517071..1517604) Haemophilus somnus 129PT 4240838 YP_719539.1 CDS pmbA NC_008309.1 1517751 1519103 D antibiotic maturation factor 1517751..1519103 Haemophilus somnus 129PT 4240839 YP_719540.1 CDS purA NC_008309.1 1519169 1520467 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1519169..1520467) Haemophilus somnus 129PT 4240840 YP_719541.1 CDS kdgK NC_008309.1 1520967 1521995 D 2-keto-3-deoxygluconate kinase 1520967..1521995 Haemophilus somnus 129PT 4240841 YP_719542.1 CDS uidA NC_008309.1 1522017 1523807 D beta-D-glucuronidase 1522017..1523807 Haemophilus somnus 129PT 4240842 YP_719543.1 CDS HS_1331 NC_008309.1 1525271 1525699 R hypothetical protein complement(1525271..1525699) Haemophilus somnus 129PT 4240843 YP_719544.1 CDS HS_1332 NC_008309.1 1525748 1525927 R hypothetical protein complement(1525748..1525927) Haemophilus somnus 129PT 4240844 YP_719545.1 CDS HS_1333 NC_008309.1 1525943 1526275 R hypothetical protein complement(1525943..1526275) Haemophilus somnus 129PT 4240845 YP_719546.1 CDS HS_1334 NC_008309.1 1526268 1526666 R terminase small subunit complement(1526268..1526666) Haemophilus somnus 129PT 4240846 YP_719547.1 CDS HS_1335 NC_008309.1 1526741 1526947 R prophage CP4-57 regulatory protein complement(1526741..1526947) Haemophilus somnus 129PT 4240847 YP_719548.1 CDS HS_1336 NC_008309.1 1527311 1528012 R hypothetical protein complement(1527311..1528012) Haemophilus somnus 129PT 4240848 YP_719549.1 CDS int NC_008309.1 1528094 1529350 R integrase complement(1528094..1529350) Haemophilus somnus 129PT 4240849 YP_719550.1 CDS HS_1338 NC_008309.1 1530177 1530716 R hypothetical protein complement(1530177..1530716) Haemophilus somnus 129PT 4240850 YP_719551.1 CDS gdhA NC_008309.1 1531121 1532470 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1531121..1532470 Haemophilus somnus 129PT 4240851 YP_719552.1 CDS HS_1340 NC_008309.1 1532664 1533491 D hypothetical protein 1532664..1533491 Haemophilus somnus 129PT 4240852 YP_719553.1 CDS upp NC_008309.1 1533632 1534258 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1533632..1534258 Haemophilus somnus 129PT 4240853 YP_719554.1 CDS uraA NC_008309.1 1534360 1535601 D uracil permease 1534360..1535601 Haemophilus somnus 129PT 4240854 YP_719555.1 CDS HS_1343 NC_008309.1 1535688 1536383 D controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1535688..1536383 Haemophilus somnus 129PT 4240855 YP_719556.1 CDS trxA NC_008309.1 1536501 1536824 R thioredoxin complement(1536501..1536824) Haemophilus somnus 129PT 4240856 YP_719557.1 CDS metB NC_008309.1 1536989 1538098 R catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase complement(1536989..1538098) Haemophilus somnus 129PT 4240857 YP_719558.1 CDS HS_1346 NC_008309.1 1538796 1539662 D chromosome partitioning-like protein 1538796..1539662 Haemophilus somnus 129PT 4240861 YP_719559.1 CDS dnaB NC_008309.1 1539655 1541031 D replicative DNA helicase 1539655..1541031 Haemophilus somnus 129PT 4240862 YP_719560.1 CDS HS_1348 NC_008309.1 1541021 1542727 D hypothetical protein 1541021..1542727 Haemophilus somnus 129PT 4240863 YP_719561.1 CDS HS_1349 NC_008309.1 1543110 1543763 D hypothetical protein 1543110..1543763 Haemophilus somnus 129PT 4240864 YP_719562.1 CDS mgsA NC_008309.1 1543827 1544285 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1543827..1544285 Haemophilus somnus 129PT 4240865 YP_719563.1 CDS HS_1351 NC_008309.1 1544310 1546475 D hypothetical protein 1544310..1546475 Haemophilus somnus 129PT 4240866 YP_719564.1 CDS HS_1352 NC_008309.1 1546477 1546983 R hypothetical protein complement(1546477..1546983) Haemophilus somnus 129PT 4240867 YP_719565.1 CDS HS_1353 NC_008309.1 1547068 1548021 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1547068..1548021 Haemophilus somnus 129PT 4240868 YP_719566.1 CDS HS_1354 NC_008309.1 1548092 1549144 R permease complement(1548092..1549144) Haemophilus somnus 129PT 4240869 YP_719567.1 CDS glnB NC_008309.1 1549144 1549482 R nitrogen regulatory protein p-II complement(1549144..1549482) Haemophilus somnus 129PT 4240870 YP_719568.1 CDS mogA NC_008309.1 1549525 1550109 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(1549525..1550109) Haemophilus somnus 129PT 4240871 YP_719569.1 CDS rnhB NC_008309.1 1550170 1550805 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1550170..1550805) Haemophilus somnus 129PT 4240872 YP_719570.1 CDS lpxB NC_008309.1 1550806 1551975 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(1550806..1551975) Haemophilus somnus 129PT 4240873 YP_719571.1 CDS lpxA NC_008309.1 1552058 1552846 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1552058..1552846) Haemophilus somnus 129PT 4240874 YP_719572.1 CDS fabZ NC_008309.1 1552860 1553315 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1552860..1553315) Haemophilus somnus 129PT 4240875 YP_719573.1 CDS HS_1361 NC_008309.1 1553399 1554358 R hypothetical protein complement(1553399..1554358) Haemophilus somnus 129PT 4240876 YP_719574.1 CDS argG NC_008309.1 1554396 1555730 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(1554396..1555730) Haemophilus somnus 129PT 4240877 YP_719575.1 CDS HS_1363 NC_008309.1 1555823 1556653 R hypothetical protein complement(1555823..1556653) Haemophilus somnus 129PT 4240878 YP_719576.1 CDS purC NC_008309.1 1556720 1557565 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1556720..1557565) Haemophilus somnus 129PT 4240879 YP_719577.1 CDS HS_1365 NC_008309.1 1558147 1558773 R hypothetical protein complement(1558147..1558773) Haemophilus somnus 129PT 4240880 YP_719578.1 CDS HS_1366 NC_008309.1 1558773 1559306 R hypothetical protein complement(1558773..1559306) Haemophilus somnus 129PT 4240881 YP_719579.1 CDS HS_1367 NC_008309.1 1559325 1560641 R hypothetical protein complement(1559325..1560641) Haemophilus somnus 129PT 4240882 YP_719580.1 CDS HS_1368 NC_008309.1 1560645 1560962 R hypothetical protein complement(1560645..1560962) Haemophilus somnus 129PT 4240883 YP_719581.1 CDS HS_1369 NC_008309.1 1560979 1562226 R hypothetical protein complement(1560979..1562226) Haemophilus somnus 129PT 4240884 YP_719582.1 CDS HS_1370 NC_008309.1 1562322 1562606 R hypothetical protein complement(1562322..1562606) Haemophilus somnus 129PT 4240885 YP_719583.1 CDS HS_1371 NC_008309.1 1562582 1563130 R hypothetical protein complement(1562582..1563130) Haemophilus somnus 129PT 4240886 YP_719584.1 CDS HS_1372 NC_008309.1 1563261 1565549 R phage-related tail fiber protein complement(1563261..1565549) Haemophilus somnus 129PT 4240887 YP_719585.1 CDS HS_1373 NC_008309.1 1565542 1567521 R hypothetical protein complement(1565542..1567521) Haemophilus somnus 129PT 4240888 YP_719586.1 CDS HS_1374 NC_008309.1 1567585 1568034 R hypothetical protein complement(1567585..1568034) Haemophilus somnus 129PT 4240889 YP_719587.1 CDS HS_1375 NC_008309.1 1568244 1568633 R hypothetical protein complement(1568244..1568633) Haemophilus somnus 129PT 4240890 YP_719588.1 CDS HS_1376 NC_008309.1 1568630 1569076 R hypothetical protein complement(1568630..1569076) Haemophilus somnus 129PT 4240891 YP_719589.1 CDS HS_1377 NC_008309.1 1569138 1570133 R hypothetical protein complement(1569138..1570133) Haemophilus somnus 129PT 4240892 YP_719590.1 CDS HS_1378 NC_008309.1 1570159 1571022 R hypothetical protein complement(1570159..1571022) Haemophilus somnus 129PT 4240893 YP_719591.1 CDS HS_1379 NC_008309.1 1571100 1571282 R hypothetical protein complement(1571100..1571282) Haemophilus somnus 129PT 4240894 YP_719592.1 CDS HS_1380 NC_008309.1 1571380 1571682 R transcription regulator complement(1571380..1571682) Haemophilus somnus 129PT 4240895 YP_719593.1 CDS HS_1381 NC_008309.1 1572189 1580201 R hypothetical protein complement(1572189..1580201) Haemophilus somnus 129PT 4240896 YP_719594.1 CDS HS_1382 NC_008309.1 1580282 1580668 R hypothetical protein complement(1580282..1580668) Haemophilus somnus 129PT 4240897 YP_719595.1 CDS HS_1383 NC_008309.1 1580465 1580851 D hypothetical protein 1580465..1580851 Haemophilus somnus 129PT 4240898 YP_719596.1 CDS HS_1384 NC_008309.1 1581207 1583273 R hypothetical protein complement(1581207..1583273) Haemophilus somnus 129PT 4240899 YP_719597.1 CDS HS_1385 NC_008309.1 1583386 1584933 R hypothetical protein complement(1583386..1584933) Haemophilus somnus 129PT 4240900 YP_719598.1 CDS HS_1386 NC_008309.1 1584933 1585628 R terminase small subunit complement(1584933..1585628) Haemophilus somnus 129PT 4240901 YP_719599.1 CDS HS_1387 NC_008309.1 1585825 1586151 R hypothetical protein complement(1585825..1586151) Haemophilus somnus 129PT 4240902 YP_719600.1 CDS HS_1388 NC_008309.1 1586124 1586660 R lysozyme, phage-related lysozyme complement(1586124..1586660) Haemophilus somnus 129PT 4240903 YP_719601.1 CDS HS_1389 NC_008309.1 1586653 1586889 R hypothetical protein complement(1586653..1586889) Haemophilus somnus 129PT 4240904 YP_719602.1 CDS HS_1390 NC_008309.1 1587177 1588223 R transposase complement(1587177..1588223) Haemophilus somnus 129PT 4240905 YP_719603.1 CDS HS_1391 NC_008309.1 1588360 1588776 D transposase 1588360..1588776 Haemophilus somnus 129PT 4240906 YP_719604.1 CDS HS_1392 NC_008309.1 1588836 1589234 R hypothetical protein complement(1588836..1589234) Haemophilus somnus 129PT 4240907 YP_719605.1 CDS HS_1393 NC_008309.1 1589385 1589789 R hypothetical protein complement(1589385..1589789) Haemophilus somnus 129PT 4240908 YP_719606.1 CDS HS_1394 NC_008309.1 1589779 1590390 R Bacteriophage Lambda NinG recombination protein; NinG recombination protein complement(1589779..1590390) Haemophilus somnus 129PT 4240909 YP_719607.1 CDS HS_1395 NC_008309.1 1590548 1590733 D hypothetical protein 1590548..1590733 Haemophilus somnus 129PT 4240910 YP_719608.1 CDS HS_1396 NC_008309.1 1590756 1591169 D hypothetical protein 1590756..1591169 Haemophilus somnus 129PT 4240911 YP_719609.1 CDS HS_1397 NC_008309.1 1591256 1592215 R hypothetical protein complement(1591256..1592215) Haemophilus somnus 129PT 4240912 YP_719610.1 CDS HS_1398 NC_008309.1 1592579 1593193 D prophage antirepressor 1592579..1593193 Haemophilus somnus 129PT 4240913 YP_719611.1 CDS HS_1399 NC_008309.1 1593245 1593697 R hypothetical protein complement(1593245..1593697) Haemophilus somnus 129PT 4240914 YP_719612.1 CDS HS_1400 NC_008309.1 1593710 1594243 R DNA methylase complement(1593710..1594243) Haemophilus somnus 129PT 4240915 YP_719613.1 CDS HS_1401 NC_008309.1 1594258 1594950 R replication protein P complement(1594258..1594950) Haemophilus somnus 129PT 4240916 YP_719614.1 CDS HS_1402 NC_008309.1 1594947 1595738 R hypothetical protein complement(1594947..1595738) Haemophilus somnus 129PT 4240917 YP_719615.1 CDS HS_1403 NC_008309.1 1595735 1595983 R hypothetical protein complement(1595735..1595983) Haemophilus somnus 129PT 4240918 YP_719616.1 CDS HS_1404 NC_008309.1 1596026 1596478 R hypothetical protein complement(1596026..1596478) Haemophilus somnus 129PT 4240919 YP_719617.1 CDS HS_1405 NC_008309.1 1596523 1596729 R hypothetical protein complement(1596523..1596729) Haemophilus somnus 129PT 4240920 YP_719618.1 CDS HS_1406 NC_008309.1 1596868 1597503 D repressor protein 1596868..1597503 Haemophilus somnus 129PT 4240921 YP_719619.1 CDS HS_1407 NC_008309.1 1597622 1598665 D hypothetical protein 1597622..1598665 Haemophilus somnus 129PT 4240922 YP_719620.1 CDS HS_1408 NC_008309.1 1598658 1598921 D hypothetical protein 1598658..1598921 Haemophilus somnus 129PT 4240923 YP_719621.1 CDS HS_1409 NC_008309.1 1598911 1599276 D hypothetical protein 1598911..1599276 Haemophilus somnus 129PT 4240924 YP_719622.1 CDS HS_1410 NC_008309.1 1599786 1600052 D hypothetical protein 1599786..1600052 Haemophilus somnus 129PT 4240925 YP_719623.1 CDS HS_1411 NC_008309.1 1600415 1600603 R hypothetical protein complement(1600415..1600603) Haemophilus somnus 129PT 4240926 YP_719624.1 CDS HS_1412 NC_008309.1 1600832 1601518 D hypothetical protein 1600832..1601518 Haemophilus somnus 129PT 4240927 YP_719625.1 CDS HS_1413 NC_008309.1 1601521 1601718 D hypothetical protein 1601521..1601718 Haemophilus somnus 129PT 4240928 YP_719626.1 CDS HS_1414 NC_008309.1 1602088 1602576 D hypothetical protein 1602088..1602576 Haemophilus somnus 129PT 4240929 YP_719627.1 CDS HS_1415 NC_008309.1 1602930 1603595 D prophage antirepressor 1602930..1603595 Haemophilus somnus 129PT 4240930 YP_719628.1 CDS HS_1416 NC_008309.1 1603682 1603966 D hypothetical protein 1603682..1603966 Haemophilus somnus 129PT 4240931 YP_719629.1 CDS HS_1417 NC_008309.1 1603963 1604400 D hypothetical protein 1603963..1604400 Haemophilus somnus 129PT 4240932 YP_719630.1 CDS HS_1418 NC_008309.1 1604397 1604696 D hypothetical protein 1604397..1604696 Haemophilus somnus 129PT 4240933 YP_719631.1 CDS HS_1419 NC_008309.1 1604708 1605643 D phage recombinase 1604708..1605643 Haemophilus somnus 129PT 4240934 YP_719632.1 CDS HS_1420 NC_008309.1 1605636 1606304 D hypothetical protein 1605636..1606304 Haemophilus somnus 129PT 4240935 YP_719633.1 CDS HS_1421 NC_008309.1 1606354 1607412 D hypothetical protein 1606354..1607412 Haemophilus somnus 129PT 4240936 YP_719634.1 CDS HS_1422 NC_008309.1 1607441 1608538 D DNA-cytosine methyltransferase 1607441..1608538 Haemophilus somnus 129PT 4240937 YP_719635.1 CDS HS_1423 NC_008309.1 1608571 1609368 D hypothetical protein 1608571..1609368 Haemophilus somnus 129PT 4240938 YP_719636.1 CDS HS_1424 NC_008309.1 1609378 1609563 D phage transcriptional regulator, AlpA 1609378..1609563 Haemophilus somnus 129PT 4240939 YP_719637.1 CDS HS_1425 NC_008309.1 1609525 1610766 R integrase complement(1609525..1610766) Haemophilus somnus 129PT 4240940 YP_719638.1 CDS ychM NC_008309.1 1611223 1612962 D role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1611223..1612962 Haemophilus somnus 129PT 4240942 YP_719639.1 CDS ffh NC_008309.1 1613005 1614381 R signal recognition particle subunit FFH/SRP54 (srp54) complement(1613005..1614381) Haemophilus somnus 129PT 4240943 YP_719640.1 CDS HS_1428 NC_008309.1 1614531 1615328 D permease 1614531..1615328 Haemophilus somnus 129PT 4240944 YP_719641.1 CDS HS_1429 NC_008309.1 1615398 1616657 D transporter 1615398..1616657 Haemophilus somnus 129PT 4240945 YP_719642.1 CDS pilB NC_008309.1 1616691 1618106 R pilin/fimbriae biogenesis protein complement(1616691..1618106) Haemophilus somnus 129PT 4240946 YP_719643.1 CDS tig NC_008309.1 1618465 1619763 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1618465..1619763 Haemophilus somnus 129PT 4240947 YP_719644.2 CDS clpP NC_008309.1 1619849 1620430 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1619849..1620430 Haemophilus somnus 129PT 4240948 YP_719645.1 CDS clpX NC_008309.1 1620446 1621690 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1620446..1621690 Haemophilus somnus 129PT 4240949 YP_719646.1 CDS amaA NC_008309.1 1622188 1623375 R N-acyl-L-amino acid amidohydrolase complement(1622188..1623375) Haemophilus somnus 129PT 4240950 YP_719647.1 CDS rplI NC_008309.1 1623908 1624357 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1623908..1624357) Haemophilus somnus 129PT 4240951 YP_719648.1 CDS rpsR NC_008309.1 1624376 1624603 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1624376..1624603) Haemophilus somnus 129PT 4240952 YP_719649.1 CDS priB NC_008309.1 1624616 1624942 R binds single-stranded DNA at the primosome assembly site; primosomal replication protein N complement(1624616..1624942) Haemophilus somnus 129PT 4240953 YP_719650.1 CDS rpsF NC_008309.1 1624929 1625306 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1624929..1625306) Haemophilus somnus 129PT 4240954 YP_719651.1 CDS HS_1439 NC_008309.1 1625558 1626280 R MgtC family membrane protein complement(1625558..1626280) Haemophilus somnus 129PT 4240955 YP_719652.1 CDS asnA NC_008309.1 1626397 1627398 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(1626397..1627398) Haemophilus somnus 129PT 4240956 YP_719653.1 CDS asnC NC_008309.1 1627573 1628025 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 1627573..1628025 Haemophilus somnus 129PT 4240957 YP_719654.1 CDS HS_1442 NC_008309.1 1628080 1628892 R hypothetical protein complement(1628080..1628892) Haemophilus somnus 129PT 4240958 YP_719655.1 CDS HS_1443 NC_008309.1 1628939 1630171 R hypothetical protein complement(1628939..1630171) Haemophilus somnus 129PT 4240959 YP_719656.1 CDS rimO NC_008309.1 1630263 1631594 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(1630263..1631594) Haemophilus somnus 129PT 4240960 YP_719657.1 CDS gpmA NC_008309.1 1631734 1632417 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1631734..1632417) Haemophilus somnus 129PT 4240961 YP_719658.1 CDS fucR NC_008309.1 1632653 1633405 D L-fucose operon activator 1632653..1633405 Haemophilus somnus 129PT 4240962 YP_719659.1 CDS fucP NC_008309.1 1633660 1634952 D L-fucose permease 1633660..1634952 Haemophilus somnus 129PT 4240963 YP_719660.1 CDS fucI NC_008309.1 1635148 1636914 D catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 1635148..1636914 Haemophilus somnus 129PT 4240964 YP_719661.1 CDS fucK NC_008309.1 1636996 1638453 D L-fuculokinase 1636996..1638453 Haemophilus somnus 129PT 4240965 YP_719662.1 CDS fucU NC_008309.1 1638447 1638881 D fucose operon fucU protein 1638447..1638881 Haemophilus somnus 129PT 4240966 YP_719663.1 CDS fucA NC_008309.1 1638895 1639542 D catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 1638895..1639542 Haemophilus somnus 129PT 4240967 YP_719664.1 CDS HS_1452 NC_008309.1 1639764 1640048 D hypothetical protein 1639764..1640048 Haemophilus somnus 129PT 4240968 YP_719665.1 CDS murI NC_008309.1 1645935 1646738 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1645935..1646738) Haemophilus somnus 129PT 4240974 YP_719666.1 CDS recG NC_008309.1 1646808 1648889 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1646808..1648889) Haemophilus somnus 129PT 4240975 YP_719667.1 CDS spoT NC_008309.1 1648889 1651012 R guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase complement(1648889..1651012) Haemophilus somnus 129PT 4240976 YP_719668.1 CDS rpoZ NC_008309.1 1651093 1651365 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1651093..1651365) Haemophilus somnus 129PT 4240977 YP_719669.1 CDS gmk NC_008309.1 1651420 1652058 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1651420..1652058) Haemophilus somnus 129PT 4240978 YP_719670.1 CDS licD NC_008309.1 1652155 1652955 R lipopolysaccharide choline phosphotransferase complement(1652155..1652955) Haemophilus somnus 129PT 4240979 YP_719671.1 CDS licC NC_008309.1 1652957 1653655 R LicC protein complement(1652957..1653655) Haemophilus somnus 129PT 4240980 YP_719672.1 CDS licB NC_008309.1 1653652 1654584 R lic-1 operon protein LicB complement(1653652..1654584) Haemophilus somnus 129PT 4240981 YP_719673.1 CDS licA NC_008309.1 1654571 1655374 R LicA protein complement(1654571..1655374) Haemophilus somnus 129PT 4240982 YP_719674.1 CDS HS_1464 NC_008309.1 1656140 1656331 D hypothetical protein 1656140..1656331 Haemophilus somnus 129PT 4240984 YP_719675.1 CDS HS_1465 NC_008309.1 1656163 1656372 D hypothetical protein 1656163..1656372 Haemophilus somnus 129PT 4240985 YP_719676.1 CDS gapA NC_008309.1 1656605 1657609 D glyceraldehyde-3-phosphate dehydrogenase 1656605..1657609 Haemophilus somnus 129PT 4240986 YP_719677.1 CDS nrdG NC_008309.1 1657785 1658252 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(1657785..1658252) Haemophilus somnus 129PT 4240987 YP_719678.1 CDS nrdD NC_008309.1 1658268 1660394 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1658268..1660394) Haemophilus somnus 129PT 4240988 YP_719679.1 CDS HS_1469 NC_008309.1 1660679 1662475 R ABC transporter ATP-binding/permease complement(1660679..1662475) Haemophilus somnus 129PT 4240989 YP_719680.1 CDS HS_1470 NC_008309.1 1662669 1664327 D hypothetical protein 1662669..1664327 Haemophilus somnus 129PT 4240990 YP_719681.1 CDS HS_1471 NC_008309.1 1664281 1664481 R hypothetical protein complement(1664281..1664481) Haemophilus somnus 129PT 4240991 YP_719682.1 CDS rpmE NC_008309.1 1664502 1664735 D 50S ribosomal protein L31P 1664502..1664735 Haemophilus somnus 129PT 4240992 YP_719683.1 CDS pfs NC_008309.1 1664811 1665500 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1664811..1665500) Haemophilus somnus 129PT 4240993 YP_719684.1 CDS recJ NC_008309.1 1665695 1667416 R single-strand DNA-specific exonuclease complement(1665695..1667416) Haemophilus somnus 129PT 4240994 YP_719685.1 CDS dsbC NC_008309.1 1667409 1668107 R thiol:disulfide interchange protein complement(1667409..1668107) Haemophilus somnus 129PT 4240995 YP_719686.1 CDS prfB NC_008309.1 1668554 1669336 D peptide chain release factor 2 1668554..1669336 Haemophilus somnus 129PT 4240996 YP_719687.1 CDS lysS NC_008309.1 1669414 1670922 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1669414..1670922 Haemophilus somnus 129PT 4240997 YP_719688.1 CDS HS_1478 NC_008309.1 1670973 1671203 R acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha complement(1670973..1671203) Haemophilus somnus 129PT 4240998 YP_719689.1 CDS bcr NC_008309.1 1671213 1672325 R Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system complement(1671213..1672325) Haemophilus somnus 129PT 4240999 YP_719690.1 CDS HS_1480 NC_008309.1 1672855 1673424 D permease 1672855..1673424 Haemophilus somnus 129PT 4241000 YP_719691.1 CDS HS_1481 NC_008309.1 1673753 1674358 D hypothetical protein 1673753..1674358 Haemophilus somnus 129PT 4241001 YP_719692.1 CDS HS_1482 NC_008309.1 1674402 1674824 D hypothetical protein 1674402..1674824 Haemophilus somnus 129PT 4241002 YP_719693.1 CDS HS_1483 NC_008309.1 1674968 1676257 R hypothetical protein complement(1674968..1676257) Haemophilus somnus 129PT 4241003 YP_719694.1 CDS HS_1484 NC_008309.1 1676318 1676845 R hypothetical protein complement(1676318..1676845) Haemophilus somnus 129PT 4241004 YP_719695.1 CDS HS_1485 NC_008309.1 1676873 1677646 R hypothetical protein complement(1676873..1677646) Haemophilus somnus 129PT 4241005 YP_719696.1 CDS holB NC_008309.1 1677664 1678722 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1677664..1678722) Haemophilus somnus 129PT 4241006 YP_719697.1 CDS tmk NC_008309.1 1678646 1679278 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1678646..1679278) Haemophilus somnus 129PT 4241007 YP_719698.1 CDS HS_1488 NC_008309.1 1679288 1680328 R hypothetical protein complement(1679288..1680328) Haemophilus somnus 129PT 4241008 YP_719699.1 CDS HS_1489 NC_008309.1 1680460 1681272 R Cof-like hydrolase complement(1680460..1681272) Haemophilus somnus 129PT 4241009 YP_719700.1 CDS comF NC_008309.1 1681419 1682117 D competence protein 1681419..1682117 Haemophilus somnus 129PT 4241010 YP_719701.1 CDS HS_1491 NC_008309.1 1682210 1682791 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 1682210..1682791 Haemophilus somnus 129PT 4241011 YP_719702.1 CDS brnQ NC_008309.1 1682829 1684145 R branched-chain amino acid carrier protein complement(1682829..1684145) Haemophilus somnus 129PT 4241012 YP_719703.1 CDS tex NC_008309.1 1684212 1686515 R transcription accessory protein complement(1684212..1686515) Haemophilus somnus 129PT 4241013 YP_719704.1 CDS greB NC_008309.1 1686695 1687171 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1686695..1687171 Haemophilus somnus 129PT 4241014 YP_719705.1 CDS ftsB NC_008309.1 1687181 1687462 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1687181..1687462 Haemophilus somnus 129PT 4241015 YP_719706.1 CDS ispD NC_008309.1 1687463 1688146 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1687463..1688146 Haemophilus somnus 129PT 4241016 YP_719707.1 CDS kefBC NC_008309.1 1688152 1689957 D glutathione-regulated potassium-efflux system protein 1688152..1689957 Haemophilus somnus 129PT 4241017 YP_719708.1 CDS ispF NC_008309.1 1689970 1690458 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1689970..1690458 Haemophilus somnus 129PT 4241018 YP_719709.1 CDS truD NC_008309.1 1690458 1691465 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1690458..1691465 Haemophilus somnus 129PT 4241019 YP_719710.1 CDS surE NC_008309.1 1691489 1692229 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1691489..1692229 Haemophilus somnus 129PT 4241020 YP_719711.1 CDS lppB NC_008309.1 1692259 1692834 D lipoprotein B 1692259..1692834 Haemophilus somnus 129PT 4241021 YP_719712.1 CDS lppB NC_008309.1 1693040 1693912 D lipoprotein B 1693040..1693912 Haemophilus somnus 129PT 4241022 YP_719713.1 CDS purL NC_008309.1 1694093 1697986 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1694093..1697986 Haemophilus somnus 129PT 4241023 YP_719714.1 CDS napC NC_008309.1 1698081 1698692 R periplasmic nitrate reductase subunit NapC complement(1698081..1698692) Haemophilus somnus 129PT 4241024 YP_719715.1 CDS napB NC_008309.1 1698707 1699129 R periplasmic nitrate reductase subunit NapB complement(1698707..1699129) Haemophilus somnus 129PT 4241025 YP_719716.1 CDS napH NC_008309.1 1699129 1700001 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(1699129..1700001) Haemophilus somnus 129PT 4241026 YP_719717.1 CDS napG NC_008309.1 1700001 1700753 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(1700001..1700753) Haemophilus somnus 129PT 4241027 YP_719718.1 CDS napA NC_008309.1 1700804 1703287 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(1700804..1703287) Haemophilus somnus 129PT 4241028 YP_719719.1 CDS napD NC_008309.1 1703314 1703784 R periplasmic nitrate reductase chaperone NapD complement(1703314..1703784) Haemophilus somnus 129PT 4241029 YP_719720.1 CDS narQ NC_008309.1 1703916 1705637 D nitrate/nitrite sensor protein NarQ 1703916..1705637 Haemophilus somnus 129PT 4241030 YP_719721.1 CDS murB NC_008309.1 1705647 1706672 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1705647..1706672 Haemophilus somnus 129PT 4241031 YP_719722.1 CDS HS_1512 NC_008309.1 1706889 1707977 D hypothetical protein 1706889..1707977 Haemophilus somnus 129PT 4241032 YP_719723.1 CDS ppa NC_008309.1 1708378 1708905 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 1708378..1708905 Haemophilus somnus 129PT 4241033 YP_719724.1 CDS HS_1514 NC_008309.1 1708964 1709728 D hypothetical protein 1708964..1709728 Haemophilus somnus 129PT 4241034 YP_719725.1 CDS rluA NC_008309.1 1709791 1710456 R ribosomal large subunit pseudouridine synthase A complement(1709791..1710456) Haemophilus somnus 129PT 4241035 YP_719726.1 CDS hepA NC_008309.1 1710458 1713358 R transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA complement(1710458..1713358) Haemophilus somnus 129PT 4241036 YP_719727.1 CDS cutC NC_008309.1 1713526 1714122 R copper homeostasis protein complement(1713526..1714122) Haemophilus somnus 129PT 4241037 YP_719728.1 CDS HS_1518 NC_008309.1 1714235 1714540 R hypothetical protein complement(1714235..1714540) Haemophilus somnus 129PT 4241038 YP_719729.1 CDS udp NC_008309.1 1714824 1715582 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 1714824..1715582 Haemophilus somnus 129PT 4241039 YP_719730.1 CDS HS_1521 NC_008309.1 1721371 1722489 D CdaR family transcriptional regulator 1721371..1722489 Haemophilus somnus 129PT 4241044 YP_719731.1 CDS glxK NC_008309.1 1723902 1725044 D glycerate kinase 1723902..1725044 Haemophilus somnus 129PT 4241046 YP_719732.1 CDS HS_1527 NC_008309.1 1726631 1727497 D hypothetical protein 1726631..1727497 Haemophilus somnus 129PT 4241048 YP_719733.1 CDS HS_1528 NC_008309.1 1727606 1727926 D hypothetical protein 1727606..1727926 Haemophilus somnus 129PT 4241049 YP_719734.1 CDS HS_1529 NC_008309.1 1728121 1728684 D hypothetical protein 1728121..1728684 Haemophilus somnus 129PT 4241050 YP_719735.1 CDS HS_1530 NC_008309.1 1728711 1728974 D hypothetical protein 1728711..1728974 Haemophilus somnus 129PT 4241051 YP_719736.1 CDS HS_1531 NC_008309.1 1728992 1729492 D hypothetical protein 1728992..1729492 Haemophilus somnus 129PT 4241052 YP_719737.1 CDS HS_1532 NC_008309.1 1729835 1730389 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(1729835..1730389) Haemophilus somnus 129PT 4241053 YP_719738.1 CDS metN NC_008309.1 1730544 1731581 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1730544..1731581 Haemophilus somnus 129PT 4241054 YP_719739.1 CDS metI NC_008309.1 1731571 1732260 D D-methionine ABC transporter permease 1731571..1732260 Haemophilus somnus 129PT 4241055 YP_719740.1 CDS plpA NC_008309.1 1732296 1733126 D outer membrane lipoprotein 1 precursor 1732296..1733126 Haemophilus somnus 129PT 4241056 YP_719741.1 CDS glmS NC_008309.1 1733284 1735116 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1733284..1735116) Haemophilus somnus 129PT 4241057 YP_719742.1 CDS HS_1537 NC_008309.1 1735142 1735924 R DeoR family transcriptional regulator complement(1735142..1735924) Haemophilus somnus 129PT 4241058 YP_719743.1 CDS hupA NC_008309.1 1736080 1736355 R DNA-binding protein HU complement(1736080..1736355) Haemophilus somnus 129PT 4241059 YP_719744.1 CDS HS_1539 NC_008309.1 1736514 1737113 R hypothetical protein complement(1736514..1737113) Haemophilus somnus 129PT 4241060 YP_719745.1 CDS hemE NC_008309.1 1737121 1738185 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1737121..1738185) Haemophilus somnus 129PT 4241061 YP_719746.1 CDS hslV NC_008309.1 1738491 1739018 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1738491..1739018 Haemophilus somnus 129PT 4241062 YP_719747.1 CDS hslU NC_008309.1 1739036 1740367 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1739036..1740367 Haemophilus somnus 129PT 4241063 YP_719748.1 CDS HS_1543 NC_008309.1 1740598 1741956 D outer membrane protein 1740598..1741956 Haemophilus somnus 129PT 4241064 YP_719749.1 CDS HS_1544 NC_008309.1 1742156 1742470 D hypothetical protein 1742156..1742470 Haemophilus somnus 129PT 4241065 YP_719750.1 CDS rpoH NC_008309.1 1742593 1743435 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1742593..1743435 Haemophilus somnus 129PT 4241066 YP_719751.1 CDS yhhW NC_008309.1 1743543 1744232 R hypothetical protein complement(1743543..1744232) Haemophilus somnus 129PT 4241067 YP_719752.1 CDS HS_1547 NC_008309.1 1744385 1744681 R hypothetical protein complement(1744385..1744681) Haemophilus somnus 129PT 4241068 YP_719753.1 CDS ompP1 NC_008309.1 1744932 1746293 D outer membrane protein P1 1744932..1746293 Haemophilus somnus 129PT 4241069 YP_719754.1 CDS dat1 NC_008309.1 1746347 1746889 D methylated-DNA-protein-cysteine methyltransferase 1746347..1746889 Haemophilus somnus 129PT 4241070 YP_719755.1 CDS mutH NC_008309.1 1746886 1747560 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1746886..1747560 Haemophilus somnus 129PT 4241071 YP_719756.1 CDS purM NC_008309.1 1747749 1748786 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1747749..1748786 Haemophilus somnus 129PT 4241072 YP_719757.1 CDS asd NC_008309.1 1748979 1750094 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1748979..1750094) Haemophilus somnus 129PT 4241073 YP_719758.1 CDS ftsX NC_008309.1 1750221 1751159 R ABC transporter, membrane protein; cell division protein FtsX complement(1750221..1751159) Haemophilus somnus 129PT 4241074 YP_719759.1 CDS ftsE NC_008309.1 1751169 1751819 R cell division ATP-binding protein FtsE complement(1751169..1751819) Haemophilus somnus 129PT 4241075 YP_719760.1 CDS holA NC_008309.1 1751946 1752986 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1751946..1752986) Haemophilus somnus 129PT 4241076 YP_719761.1 CDS HS_1556 NC_008309.1 1752986 1753489 R rare lipoprotein B complement(1752986..1753489) Haemophilus somnus 129PT 4241077 YP_719762.1 CDS leuS NC_008309.1 1753538 1756120 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1753538..1756120) Haemophilus somnus 129PT 4241078 YP_719763.1 CDS apaH NC_008309.1 1756407 1757228 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1756407..1757228) Haemophilus somnus 129PT 4241079 YP_719764.1 CDS ksgA NC_008309.1 1757279 1758124 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1757279..1758124) Haemophilus somnus 129PT 4241080 YP_719765.1 CDS surA NC_008309.1 1758200 1759144 R stationary-phase survival protein; peptidyl-prolyl cis-trans isomerase, PPIC-type complement(1758200..1759144) Haemophilus somnus 129PT 4241081 YP_719766.1 CDS pyrR NC_008309.1 1759227 1759817 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(1759227..1759817) Haemophilus somnus 129PT 4241082 YP_719767.1 CDS mtr NC_008309.1 1759927 1761177 R tryptophan-specific transport protein complement(1759927..1761177) Haemophilus somnus 129PT 4241083 YP_719768.1 CDS HS_1563 NC_008309.1 1761577 1762494 D hypothetical protein 1761577..1762494 Haemophilus somnus 129PT 4241084 YP_719769.1 CDS rpoC NC_008309.1 1762830 1767092 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1762830..1767092) Haemophilus somnus 129PT 4241085 YP_719770.1 CDS rpoB NC_008309.1 1767183 1771211 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1767183..1771211) Haemophilus somnus 129PT 4241086 YP_719771.1 CDS dcuB NC_008309.1 1771715 1773040 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter complement(1771715..1773040) Haemophilus somnus 129PT 4241087 YP_719772.1 CDS HS_1567 NC_008309.1 1773283 1773804 R DMT family permease complement(1773283..1773804) Haemophilus somnus 129PT 4241088 YP_719773.1 CDS HS_1568 NC_008309.1 1773789 1774133 R hypothetical protein complement(1773789..1774133) Haemophilus somnus 129PT 4241089 YP_719774.1 CDS hemG NC_008309.1 1780165 1780677 R catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase complement(1780165..1780677) Haemophilus somnus 129PT 4241096 YP_719775.1 CDS trkH NC_008309.1 1780677 1782140 R potassium uptake system protein complement(1780677..1782140) Haemophilus somnus 129PT 4241097 YP_719776.1 CDS HS_1571 NC_008309.1 1782152 1782760 R hypothetical protein complement(1782152..1782760) Haemophilus somnus 129PT 4241098 YP_719777.1 CDS HS_1572 NC_008309.1 1782833 1783072 D TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1782833..1783072 Haemophilus somnus 129PT 4241099 YP_719778.1 CDS speF NC_008309.1 1783677 1785836 D ornithine decarboxylase 1783677..1785836 Haemophilus somnus 129PT 4241100 YP_719779.1 CDS potE NC_008309.1 1785893 1787203 D catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 1785893..1787203 Haemophilus somnus 129PT 4241101 YP_719780.1 CDS HS_1575 NC_008309.1 1787321 1788058 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1787321..1788058 Haemophilus somnus 129PT 4241102 YP_719781.1 CDS iolG NC_008309.1 1788120 1789130 R possible myo-inositol 2-dehydrogenase; dehydrogenase complement(1788120..1789130) Haemophilus somnus 129PT 4241103 YP_719782.1 CDS iolE NC_008309.1 1789132 1790028 R myo-inositol catabolism protein complement(1789132..1790028) Haemophilus somnus 129PT 4241104 YP_719783.1 CDS iolD NC_008309.1 1790102 1792039 R myo-inositol catabolism protein complement(1790102..1792039) Haemophilus somnus 129PT 4241105 YP_719784.1 CDS rbsC NC_008309.1 1792226 1793182 R sugar ABC transporter permease complement(1792226..1793182) Haemophilus somnus 129PT 4241106 YP_719785.1 CDS HS_1580 NC_008309.1 1793220 1794737 R sugar ABC transporter ATP-binding protein complement(1793220..1794737) Haemophilus somnus 129PT 4241107 YP_719786.1 CDS HS_1581 NC_008309.1 1794818 1795750 R ABC transporter periplasmic sugar-binding protein complement(1794818..1795750) Haemophilus somnus 129PT 4241108 YP_719787.1 CDS HS_1582 NC_008309.1 1795838 1796773 R ABC transporter periplasmic sugar-binding protein complement(1795838..1796773) Haemophilus somnus 129PT 4241109 YP_719788.1 CDS HS_1583 NC_008309.1 1797067 1798203 R dehydrogenase complement(1797067..1798203) Haemophilus somnus 129PT 4241110 YP_719789.1 CDS HS_1584 NC_008309.1 1798287 1799783 R methylmalonate-semialdehyde dehydrogenase complement(1798287..1799783) Haemophilus somnus 129PT 4241111 YP_719790.1 CDS HS_1585 NC_008309.1 1799956 1800804 R hypothetical protein complement(1799956..1800804) Haemophilus somnus 129PT 4241112 YP_719791.1 CDS HS_1586 NC_008309.1 1800815 1802200 R major facilitator superfamily permease complement(1800815..1802200) Haemophilus somnus 129PT 4241113 YP_719792.1 CDS HS_1587 NC_008309.1 1802437 1803267 D myo-inositol catabolism protein 1802437..1803267 Haemophilus somnus 129PT 4241114 YP_719793.1 CDS HS_1588 NC_008309.1 1803350 1805188 R ABC transporter ATP-binding/permease complement(1803350..1805188) Haemophilus somnus 129PT 4241115 YP_719794.1 CDS coaD NC_008309.1 1805262 1805738 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(1805262..1805738) Haemophilus somnus 129PT 4241116 YP_719795.1 CDS kdtA NC_008309.1 1805738 1807018 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(1805738..1807018) Haemophilus somnus 129PT 4241117 YP_719796.1 CDS tpiA NC_008309.1 1807116 1807883 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1807116..1807883) Haemophilus somnus 129PT 4241118 YP_719797.1 CDS HS_1592 NC_008309.1 1808051 1808488 D acetyltransferase 1808051..1808488 Haemophilus somnus 129PT 4241119 YP_719798.1 CDS purB NC_008309.1 1808568 1809935 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1808568..1809935) Haemophilus somnus 129PT 4241120 YP_719799.1 CDS HS_1594 NC_008309.1 1809958 1810569 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(1809958..1810569) Haemophilus somnus 129PT 4241121 YP_719800.1 CDS HS_1595 NC_008309.1 1810730 1811257 D hypothetical protein 1810730..1811257 Haemophilus somnus 129PT 4241122 YP_719801.1 CDS uxuA NC_008309.1 1811479 1812663 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(1811479..1812663) Haemophilus somnus 129PT 4241123 YP_719802.1 CDS uxuR NC_008309.1 1812682 1813440 R GntR family transcriptional regulator complement(1812682..1813440) Haemophilus somnus 129PT 4241124 YP_719803.1 CDS HS_1598 NC_008309.1 1813693 1814538 D Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 1813693..1814538 Haemophilus somnus 129PT 4241125 YP_719804.1 CDS HS_1599 NC_008309.1 1814548 1815363 D hypothetical protein 1814548..1815363 Haemophilus somnus 129PT 4241126 YP_719805.1 CDS HS_1600 NC_008309.1 1815405 1817165 D beta-hexosamidase A 1815405..1817165 Haemophilus somnus 129PT 4241127 YP_719806.1 CDS uidB NC_008309.1 1817191 1818606 D glucuronide permease 1817191..1818606 Haemophilus somnus 129PT 4241128 YP_719807.1 CDS uxaC NC_008309.1 1818628 1820019 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 1818628..1820019 Haemophilus somnus 129PT 4241129 YP_719808.1 CDS eda NC_008309.1 1820067 1820708 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1820067..1820708 Haemophilus somnus 129PT 4241130 YP_719809.1 CDS HS_1604 NC_008309.1 1821128 1821382 D hypothetical protein 1821128..1821382 Haemophilus somnus 129PT 4241131 YP_719810.1 CDS rpoE NC_008309.1 1821488 1822063 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1821488..1822063 Haemophilus somnus 129PT 4241132 YP_719811.1 CDS rseA NC_008309.1 1821979 1822680 D sigma-E factor negative regulatory protein 1821979..1822680 Haemophilus somnus 129PT 4241133 YP_719812.1 CDS rseB NC_008309.1 1822744 1823682 D periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 1822744..1823682 Haemophilus somnus 129PT 4241134 YP_719813.1 CDS rseC NC_008309.1 1823621 1824124 D positive sigma-E factor regulatory protein 1823621..1824124 Haemophilus somnus 129PT 4241135 YP_719814.1 CDS mobB NC_008309.1 1824009 1824635 D molybdopterin-guanine dinucleotide biosynthesis protein B 1824009..1824635 Haemophilus somnus 129PT 4241136 YP_719815.1 CDS dapF NC_008309.1 1824790 1825614 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1824790..1825614 Haemophilus somnus 129PT 4241137 YP_719816.1 CDS rfaC NC_008309.1 1825664 1826629 R ADP-heptose:LPS heptosyl transferase I complement(1825664..1826629) Haemophilus somnus 129PT 4241138 YP_719817.1 CDS rfaF NC_008309.1 1826631 1827671 R ADP-heptose--LPS heptosyltransferase II complement(1826631..1827671) Haemophilus somnus 129PT 4241139 YP_719818.1 CDS rfaD NC_008309.1 1827809 1828738 R catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase complement(1827809..1828738) Haemophilus somnus 129PT 4241140 YP_719819.1 CDS rmuC NC_008309.1 1828798 1830405 R DNA recombination protein rmuC complement(1828798..1830405) Haemophilus somnus 129PT 4241141 YP_719820.1 CDS HS_1615 NC_008309.1 1830478 1831695 R dehydrogenase complement(1830478..1831695) Haemophilus somnus 129PT 4241142 YP_719821.1 CDS HS_1616 NC_008309.1 1832041 1841277 R large adhesin complement(1832041..1841277) Haemophilus somnus 129PT 4241143 YP_719822.1 CDS uvrB NC_008309.1 1841800 1843833 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1841800..1843833 Haemophilus somnus 129PT 4241144 YP_719823.1 CDS HS_1618 NC_008309.1 1843804 1844280 R tRNA-adenosine deaminase complement(1843804..1844280) Haemophilus somnus 129PT 4241145 YP_719824.1 CDS thyA NC_008309.1 1844326 1845177 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1844326..1845177) Haemophilus somnus 129PT 4241146 YP_719825.1 CDS lgt NC_008309.1 1845184 1845996 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1845184..1845996) Haemophilus somnus 129PT 4241147 YP_719826.1 CDS HS_1621 NC_008309.1 1846006 1846800 R permease complement(1846006..1846800) Haemophilus somnus 129PT 4241148 YP_719827.1 CDS nudH NC_008309.1 1846811 1847389 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(1846811..1847389) Haemophilus somnus 129PT 4241149 YP_719828.1 CDS metK NC_008309.1 1847666 1848820 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1847666..1848820 Haemophilus somnus 129PT 4241150 YP_719829.1 CDS sprT NC_008309.1 1848898 1849407 D hypothetical protein 1848898..1849407 Haemophilus somnus 129PT 4241151 YP_719830.1 CDS purH NC_008309.1 1849542 1851140 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1849542..1851140 Haemophilus somnus 129PT 4241152 YP_719831.1 CDS purD NC_008309.1 1851189 1852487 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1851189..1852487 Haemophilus somnus 129PT 4241153 YP_719832.1 CDS glyA NC_008309.1 1852630 1853889 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1852630..1853889 Haemophilus somnus 129PT 4241154 YP_719833.1 CDS pckA NC_008309.1 1854069 1855685 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1854069..1855685 Haemophilus somnus 129PT 4241155 YP_719834.1 CDS spoU NC_008309.1 1855857 1856342 D tRNA/rRNA methyltransferase 1855857..1856342 Haemophilus somnus 129PT 4241156 YP_719835.1 CDS HS_1630 NC_008309.1 1856359 1856772 D hypothetical protein 1856359..1856772 Haemophilus somnus 129PT 4241157 YP_719836.1 CDS slyD NC_008309.1 1856829 1857410 D FKBP-type peptidyl-prolyl cis-trans isomerase 1856829..1857410 Haemophilus somnus 129PT 4241158 YP_719837.1 CDS HS_1632 NC_008309.1 1858163 1866907 D large adhesin 1858163..1866907 Haemophilus somnus 129PT 4241159 YP_719838.1 CDS HS_1633 NC_008309.1 1867240 1867530 R hypothetical protein complement(1867240..1867530) Haemophilus somnus 129PT 4241160 YP_719839.1 CDS HS_1634 NC_008309.1 1867542 1867904 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC complement(1867542..1867904) Haemophilus somnus 129PT 4241161 YP_719840.1 CDS HS_1635 NC_008309.1 1867901 1868281 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(1867901..1868281) Haemophilus somnus 129PT 4241162 YP_719841.1 CDS HS_1636 NC_008309.1 1868281 1868949 R hypothetical protein complement(1868281..1868949) Haemophilus somnus 129PT 4241163 YP_719842.1 CDS slyD NC_008309.1 1869018 1869704 R FKBP-type peptidyl-prolyl cis-trans isomerase complement(1869018..1869704) Haemophilus somnus 129PT 4241164 YP_719843.1 CDS slyX NC_008309.1 1869801 1870022 D hypothetical protein 1869801..1870022 Haemophilus somnus 129PT 4241165 YP_719844.1 CDS HS_1639 NC_008309.1 1870024 1870479 R MutT/NUDIX family NTP pyrophosphohydrolase complement(1870024..1870479) Haemophilus somnus 129PT 4241166 YP_719845.1 CDS rluE NC_008309.1 1870481 1871128 R ribosomal large subunit pseudouridine synthase E complement(1870481..1871128) Haemophilus somnus 129PT 4241167 YP_719846.1 CDS icd NC_008309.1 1871215 1873428 R isocitrate dehydrogenase complement(1871215..1873428) Haemophilus somnus 129PT 4241168 YP_719847.1 CDS HS_1642 NC_008309.1 1873643 1874821 D hypothetical protein 1873643..1874821 Haemophilus somnus 129PT 4241169 YP_719848.1 CDS HS_1643 NC_008309.1 1874882 1875634 D hypothetical protein 1874882..1875634 Haemophilus somnus 129PT 4241170 YP_719849.1 CDS tufA NC_008309.1 1876089 1877273 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1876089..1877273) Haemophilus somnus 129PT 4241171 YP_719850.1 CDS fusA NC_008309.1 1877345 1879447 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1877345..1879447) Haemophilus somnus 129PT 4241172 YP_719851.1 CDS rpsG NC_008309.1 1879539 1880009 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1879539..1880009) Haemophilus somnus 129PT 4241173 YP_719852.1 CDS rpsL NC_008309.1 1880140 1880514 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1880140..1880514) Haemophilus somnus 129PT 4241174 YP_719853.1 CDS hslO NC_008309.1 1880673 1881533 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(1880673..1881533) Haemophilus somnus 129PT 4241175 YP_719854.1 CDS hslR NC_008309.1 1881589 1881999 R heat shock protein 15 complement(1881589..1881999) Haemophilus somnus 129PT 4241176 YP_719855.1 CDS cysQ NC_008309.1 1881915 1882889 D 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 1881915..1882889 Haemophilus somnus 129PT 4241177 YP_719856.1 CDS zwf NC_008309.1 1882961 1884451 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1882961..1884451 Haemophilus somnus 129PT 4241178 YP_719857.1 CDS pgl NC_008309.1 1884562 1885206 D 6-phosphogluconolactonase 1884562..1885206 Haemophilus somnus 129PT 4241179 YP_719858.1 CDS HS_1653 NC_008309.1 1885220 1885618 D hypothetical protein 1885220..1885618 Haemophilus somnus 129PT 4241180 YP_719859.1 CDS gnd NC_008309.1 1885622 1887076 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1885622..1887076 Haemophilus somnus 129PT 4241181 YP_719860.1 CDS vacJ NC_008309.1 1887245 1887994 D VacJ lipoprotein 1887245..1887994 Haemophilus somnus 129PT 4241182 YP_719861.1 CDS HS_1656 NC_008309.1 1888020 1888508 D hypothetical protein 1888020..1888508 Haemophilus somnus 129PT 4241183 YP_719862.1 CDS HS_1657 NC_008309.1 1888559 1888858 R hypothetical protein complement(1888559..1888858) Haemophilus somnus 129PT 4241184 YP_719863.1 CDS HS_1658 NC_008309.1 1888884 1889441 R integral membrane protein complement(1888884..1889441) Haemophilus somnus 129PT 4241185 YP_719864.1 CDS corA NC_008309.1 1889441 1890391 R responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA complement(1889441..1890391) Haemophilus somnus 129PT 4241186 YP_719865.1 CDS HS_1660 NC_008309.1 1890486 1890689 R hypothetical protein complement(1890486..1890689) Haemophilus somnus 129PT 4241187 YP_719866.1 CDS HS_1661 NC_008309.1 1890726 1891064 R hypothetical protein complement(1890726..1891064) Haemophilus somnus 129PT 4241188 YP_719867.1 CDS HS_1662 NC_008309.1 1891162 1892091 R LysR family transcriptional regulator complement(1891162..1892091) Haemophilus somnus 129PT 4241189 YP_719868.1 CDS HS_1663 NC_008309.1 1892159 1893628 D permease 1892159..1893628 Haemophilus somnus 129PT 4241190 YP_719869.1 CDS gpm NC_008309.1 1893567 1894244 D phosphoglycerate mutase 1893567..1894244 Haemophilus somnus 129PT 4241191 YP_719870.1 CDS HS_1665 NC_008309.1 1894370 1894819 R hypothetical protein complement(1894370..1894819) Haemophilus somnus 129PT 4241192 YP_719871.1 CDS trmB NC_008309.1 1894831 1895586 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1894831..1895586) Haemophilus somnus 129PT 4241193 YP_719872.1 CDS mutY NC_008309.1 1895732 1896844 D A/G-specific DNA-adenine glycosylase 1895732..1896844 Haemophilus somnus 129PT 4241194 YP_719873.1 CDS HS_1668 NC_008309.1 1896847 1897122 D hypothetical protein 1896847..1897122 Haemophilus somnus 129PT 4241195 YP_719874.1 CDS mltC NC_008309.1 1897129 1898220 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 1897129..1898220 Haemophilus somnus 129PT 4241196 YP_719875.1 CDS manB NC_008309.1 1898321 1899979 D phosphomannomutase 1898321..1899979 Haemophilus somnus 129PT 4241197 YP_719876.1 CDS ilvC NC_008309.1 1900106 1901587 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(1900106..1901587) Haemophilus somnus 129PT 4241198 YP_719877.1 CDS torC NC_008309.1 1901844 1903013 D cytochrome c-type protein 1901844..1903013 Haemophilus somnus 129PT 4241199 YP_719878.1 CDS torA NC_008309.1 1903028 1905496 D trimethylamine-N-oxide reductase precursor 1903028..1905496 Haemophilus somnus 129PT 4241200 YP_719879.1 CDS torD NC_008309.1 1905493 1906074 D TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1905493..1906074 Haemophilus somnus 129PT 4241201 YP_719880.1 CDS HS_1675 NC_008309.1 1906359 1906712 R histone acetyltransferase complement(1906359..1906712) Haemophilus somnus 129PT 4241202 YP_719881.1 CDS HS_1676 NC_008309.1 1906732 1907013 R hypothetical protein complement(1906732..1907013) Haemophilus somnus 129PT 4241203 YP_719882.1 CDS HS_1677 NC_008309.1 1907010 1907219 R hypothetical protein complement(1907010..1907219) Haemophilus somnus 129PT 4241204 YP_719883.1 CDS HS_1678 NC_008309.1 1907383 1907673 R hypothetical protein complement(1907383..1907673) Haemophilus somnus 129PT 4241205 YP_719884.1 CDS HS_1679 NC_008309.1 1907757 1908410 D transposase 1907757..1908410 Haemophilus somnus 129PT 4241206 YP_719885.1 CDS HS_1680 NC_008309.1 1909106 1909975 D hypothetical protein 1909106..1909975 Haemophilus somnus 129PT 4241207 YP_719886.1 CDS HS_1681 NC_008309.1 1910070 1910312 D NAD-dependent aldehyde dehydrogenase 1910070..1910312 Haemophilus somnus 129PT 4241208 YP_719887.1 CDS attK NC_008309.1 1910279 1910476 D possible succinate-semialdehyde dehydrogenase (NAD(P)); aldehyde dehydrogenase 1910279..1910476 Haemophilus somnus 129PT 4241209 YP_719888.1 CDS mnmA NC_008309.1 1910523 1911674 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1910523..1911674) Haemophilus somnus 129PT 4241210 YP_719889.1 CDS HS_1684 NC_008309.1 1911709 1912221 R hypothetical protein complement(1911709..1912221) Haemophilus somnus 129PT 4241211 YP_719890.1 CDS HS_1685 NC_008309.1 1912262 1912516 R hypothetical protein complement(1912262..1912516) Haemophilus somnus 129PT 4241212 YP_719891.1 CDS apbE NC_008309.1 1912526 1913575 R thiamine biosynthesis lipoprotein complement(1912526..1913575) Haemophilus somnus 129PT 4241213 YP_719892.1 CDS msrAB NC_008309.1 1913591 1914103 R peptide methionine sulfoxide reductase msrA/msrB complement(1913591..1914103) Haemophilus somnus 129PT 4241214 YP_719893.1 CDS nqrF NC_008309.1 1914206 1915429 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(1914206..1915429) Haemophilus somnus 129PT 4241215 YP_719894.1 CDS nqrE NC_008309.1 1915444 1916040 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(1915444..1916040) Haemophilus somnus 129PT 4241216 YP_719895.1 CDS nqrD NC_008309.1 1916044 1916667 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(1916044..1916667) Haemophilus somnus 129PT 4241217 YP_719896.1 CDS nqrC NC_008309.1 1916667 1917443 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(1916667..1917443) Haemophilus somnus 129PT 4241218 YP_719897.1 CDS nqrB NC_008309.1 1917436 1918674 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(1917436..1918674) Haemophilus somnus 129PT 4241219 YP_719898.1 CDS nqrA NC_008309.1 1918677 1920017 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1918677..1920017) Haemophilus somnus 129PT 4241220 YP_719899.1 CDS bolA NC_008309.1 1920345 1920701 R transcriptional regulator BolA complement(1920345..1920701) Haemophilus somnus 129PT 4241221 YP_719900.1 CDS atpC NC_008309.1 1920846 1921274 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1920846..1921274) Haemophilus somnus 129PT 4241222 YP_719901.1 CDS atpD NC_008309.1 1921317 1922690 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1921317..1922690) Haemophilus somnus 129PT 4241223 YP_719902.1 CDS atpG NC_008309.1 1922704 1923573 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1922704..1923573) Haemophilus somnus 129PT 4241224 YP_719903.1 CDS atpA NC_008309.1 1923597 1925138 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1923597..1925138) Haemophilus somnus 129PT 4241225 YP_719904.2 CDS atpH NC_008309.1 1925151 1925699 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1925151..1925699) Haemophilus somnus 129PT 4241226 YP_719905.1 CDS atpF NC_008309.1 1925713 1926183 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(1925713..1926183) Haemophilus somnus 129PT 4241227 YP_719906.1 CDS atpE NC_008309.1 1926247 1926501 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1926247..1926501) Haemophilus somnus 129PT 4241228 YP_719907.1 CDS atpB NC_008309.1 1926600 1927397 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(1926600..1927397) Haemophilus somnus 129PT 4241229 YP_719908.1 CDS HS_1703 NC_008309.1 1927416 1927805 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I complement(1927416..1927805) Haemophilus somnus 129PT 4241230 YP_719909.1 CDS gidB NC_008309.1 1927918 1928556 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1927918..1928556) Haemophilus somnus 129PT 4241231 YP_719910.1 CDS gidA NC_008309.1 1928580 1930469 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(1928580..1930469) Haemophilus somnus 129PT 4241232 YP_719911.1 CDS mioC NC_008309.1 1930849 1931298 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin complement(1930849..1931298) Haemophilus somnus 129PT 4241233 YP_719912.1 CDS HS_1707 NC_008309.1 1931364 1931582 R hypothetical protein complement(1931364..1931582) Haemophilus somnus 129PT 4241234 YP_719913.1 CDS gyrB NC_008309.1 1931837 1934260 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1931837..1934260 Haemophilus somnus 129PT 4241235 YP_719914.1 CDS HS_1709 NC_008309.1 1934310 1934963 D transposase 1934310..1934963 Haemophilus somnus 129PT 4241236 YP_719915.1 CDS HS_1710 NC_008309.1 1935023 1935265 D hypothetical protein 1935023..1935265 Haemophilus somnus 129PT 4241237 YP_719916.1 CDS recQ NC_008309.1 1935345 1937219 R ATP-dependent DNA helicase RecQ complement(1935345..1937219) Haemophilus somnus 129PT 4241238 YP_719917.1 CDS cyaY NC_008309.1 1937219 1937527 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(1937219..1937527) Haemophilus somnus 129PT 4241239 YP_719918.1 CDS lysA NC_008309.1 1937805 1939058 D diaminopimelate decarboxylase 1937805..1939058 Haemophilus somnus 129PT 4241240 YP_719919.1 CDS HS_1714 NC_008309.1 1939322 1940830 D SNF family sodium-dependent transporter 1939322..1940830 Haemophilus somnus 129PT 4241241 YP_719920.1 CDS tfoX NC_008309.1 1941365 1942081 R DNA transformation protein complement(1941365..1942081) Haemophilus somnus 129PT 4241242 YP_719921.1 CDS dsdC NC_008309.1 1948118 1949056 R regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC complement(1948118..1949056) Haemophilus somnus 129PT 4241248 YP_719922.1 CDS dsdX NC_008309.1 1949246 1950583 D member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 1949246..1950583 Haemophilus somnus 129PT 4241249 YP_719923.1 CDS dsdA NC_008309.1 1950612 1951910 D catalyzes the formation of pyruvate from serine; D-serine dehydratase 1950612..1951910 Haemophilus somnus 129PT 4241250 YP_719924.1 CDS HS_1719 NC_008309.1 1952412 1953263 D chromosome partitioning-like protein 1952412..1953263 Haemophilus somnus 129PT 4241253 YP_719925.1 CDS dnaB NC_008309.1 1953256 1954632 D replicative DNA helicase 1953256..1954632 Haemophilus somnus 129PT 4241254 YP_719926.1 CDS HS_1721 NC_008309.1 1954622 1956328 D hypothetical protein 1954622..1956328 Haemophilus somnus 129PT 4241255 YP_719927.1 CDS HS_1722 NC_008309.1 1956339 1956890 D hypothetical protein 1956339..1956890 Haemophilus somnus 129PT 4241256 YP_719928.1 CDS HS_1723 NC_008309.1 1957053 1958282 D hypothetical protein 1957053..1958282 Haemophilus somnus 129PT 4241257 YP_719929.1 CDS HS_1724 NC_008309.1 1958896 1959648 D hypothetical protein 1958896..1959648 Haemophilus somnus 129PT 4241258 YP_719930.1 CDS HS_1725 NC_008309.1 1959689 1960201 D hypothetical protein 1959689..1960201 Haemophilus somnus 129PT 4241259 YP_719931.1 CDS HS_1726 NC_008309.1 1960349 1961146 D hypothetical protein 1960349..1961146 Haemophilus somnus 129PT 4241260 YP_719932.1 CDS HS_1727 NC_008309.1 1961150 1961359 D hypothetical protein 1961150..1961359 Haemophilus somnus 129PT 4241261 YP_719933.1 CDS HS_1728 NC_008309.1 1961363 1961557 R hypothetical protein complement(1961363..1961557) Haemophilus somnus 129PT 4241262 YP_719934.1 CDS ssb NC_008309.1 1961745 1962194 D single-stranded DNA binding protein 1961745..1962194 Haemophilus somnus 129PT 4241263 YP_719935.1 CDS HS_1730 NC_008309.1 1962274 1962732 D hypothetical protein 1962274..1962732 Haemophilus somnus 129PT 4241264 YP_719936.1 CDS HS_1731 NC_008309.1 1962695 1963465 R hypothetical protein complement(1962695..1963465) Haemophilus somnus 129PT 4241265 YP_719937.1 CDS HS_1732 NC_008309.1 1963578 1964057 D hypothetical protein 1963578..1964057 Haemophilus somnus 129PT 4241266 YP_719938.1 CDS HS_1733 NC_008309.1 1964537 1965055 D hypothetical protein 1964537..1965055 Haemophilus somnus 129PT 4241267 YP_719939.1 CDS HS_1734 NC_008309.1 1965052 1965303 R hypothetical protein complement(1965052..1965303) Haemophilus somnus 129PT 4241268 YP_719940.1 CDS HS_1735 NC_008309.1 1965589 1966311 R hypothetical protein complement(1965589..1966311) Haemophilus somnus 129PT 4241269 YP_719941.1 CDS HS_1736 NC_008309.1 1966253 1966693 D hypothetical protein 1966253..1966693 Haemophilus somnus 129PT 4241270 YP_719942.1 CDS topA NC_008309.1 1966695 1968725 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1966695..1968725 Haemophilus somnus 129PT 4241271 YP_719943.1 CDS HS_1738 NC_008309.1 1969488 1969952 D hypothetical protein 1969488..1969952 Haemophilus somnus 129PT 4241272 YP_719944.1 CDS HS_1739 NC_008309.1 1970033 1970431 D hypothetical protein 1970033..1970431 Haemophilus somnus 129PT 4241273 YP_719945.1 CDS HS_1740 NC_008309.1 1970520 1970813 D hypothetical protein 1970520..1970813 Haemophilus somnus 129PT 4241274 YP_719946.1 CDS HS_1741 NC_008309.1 1971203 1971508 D hypothetical protein 1971203..1971508 Haemophilus somnus 129PT 4241275 YP_719947.1 CDS HS_1742 NC_008309.1 1971652 1972299 D hypothetical protein 1971652..1972299 Haemophilus somnus 129PT 4241276 YP_719948.1 CDS HS_1743 NC_008309.1 1972320 1972517 D hypothetical protein 1972320..1972517 Haemophilus somnus 129PT 4241277 YP_719949.1 CDS HS_1744 NC_008309.1 1972670 1973002 D hypothetical protein 1972670..1973002 Haemophilus somnus 129PT 4241278 YP_719950.1 CDS HS_1745 NC_008309.1 1973220 1973666 D hypothetical protein 1973220..1973666 Haemophilus somnus 129PT 4241279 YP_719951.1 CDS HS_1746 NC_008309.1 1973782 1974429 D hypothetical protein 1973782..1974429 Haemophilus somnus 129PT 4241280 YP_719952.1 CDS HS_1747 NC_008309.1 1974317 1975168 D hypothetical protein 1974317..1975168 Haemophilus somnus 129PT 4241281 YP_719953.1 CDS HS_1748 NC_008309.1 1975087 1975857 D hypothetical protein 1975087..1975857 Haemophilus somnus 129PT 4241282 YP_719954.1 CDS HS_1749 NC_008309.1 1975888 1976151 D hypothetical protein 1975888..1976151 Haemophilus somnus 129PT 4241283 YP_719955.1 CDS HS_1750 NC_008309.1 1976152 1976664 D hypothetical protein 1976152..1976664 Haemophilus somnus 129PT 4241284 YP_719956.1 CDS HS_1751 NC_008309.1 1976664 1978895 D hypothetical protein 1976664..1978895 Haemophilus somnus 129PT 4241285 YP_719957.1 CDS HS_1752 NC_008309.1 1978892 1979230 D hypothetical protein 1978892..1979230 Haemophilus somnus 129PT 4241286 YP_719958.1 CDS HS_1753 NC_008309.1 1979230 1979919 D hypothetical protein 1979230..1979919 Haemophilus somnus 129PT 4241287 YP_719959.1 CDS HS_1754 NC_008309.1 1980104 1980292 D hypothetical protein 1980104..1980292 Haemophilus somnus 129PT 4241288 YP_719960.1 CDS HS_1755 NC_008309.1 1980289 1980570 D hypothetical protein 1980289..1980570 Haemophilus somnus 129PT 4241289 YP_719961.1 CDS HS_1756 NC_008309.1 1981051 1981374 D hypothetical protein 1981051..1981374 Haemophilus somnus 129PT 4241290 YP_719962.1 CDS HS_1757 NC_008309.1 1981385 1981627 D hypothetical protein 1981385..1981627 Haemophilus somnus 129PT 4241291 YP_719963.1 CDS HS_1758 NC_008309.1 1981636 1982046 D hypothetical protein 1981636..1982046 Haemophilus somnus 129PT 4241292 YP_719964.1 CDS HS_1759 NC_008309.1 1982089 1982457 D hypothetical protein 1982089..1982457 Haemophilus somnus 129PT 4241293 YP_719965.1 CDS HS_1760 NC_008309.1 1982458 1983096 D hypothetical protein 1982458..1983096 Haemophilus somnus 129PT 4241294 YP_719966.1 CDS HS_1761 NC_008309.1 1983097 1984017 D hypothetical protein 1983097..1984017 Haemophilus somnus 129PT 4241295 YP_719967.1 CDS HS_1762 NC_008309.1 1984004 1985425 D hypothetical protein 1984004..1985425 Haemophilus somnus 129PT 4241296 YP_719968.1 CDS HS_1763 NC_008309.1 1985437 1985841 D hypothetical protein 1985437..1985841 Haemophilus somnus 129PT 4241297 YP_719969.1 CDS HS_1764 NC_008309.1 1985841 1988657 D hypothetical protein 1985841..1988657 Haemophilus somnus 129PT 4241298 YP_719970.1 CDS HS_1765 NC_008309.1 1988644 1989033 D hypothetical protein 1988644..1989033 Haemophilus somnus 129PT 4241299 YP_719971.1 CDS HS_1766 NC_008309.1 1989033 1989332 D hypothetical protein 1989033..1989332 Haemophilus somnus 129PT 4241300 YP_719972.1 CDS HS_1767 NC_008309.1 1989343 1990845 D hypothetical protein 1989343..1990845 Haemophilus somnus 129PT 4241301 YP_719973.1 CDS HS_1768 NC_008309.1 1990896 1991228 R hypothetical protein complement(1990896..1991228) Haemophilus somnus 129PT 4241302 YP_719974.1 CDS HS_1769 NC_008309.1 1991256 1991651 R hypothetical protein complement(1991256..1991651) Haemophilus somnus 129PT 4241303 YP_719975.1 CDS HS_1770 NC_008309.1 1991657 1991989 R hypothetical protein complement(1991657..1991989) Haemophilus somnus 129PT 4241304 YP_719976.1 CDS HS_1771 NC_008309.1 1992060 1992461 R hypothetical protein complement(1992060..1992461) Haemophilus somnus 129PT 4241305 YP_719977.1 CDS HS_1772 NC_008309.1 1992461 1992700 R hypothetical protein complement(1992461..1992700) Haemophilus somnus 129PT 4241306 YP_719978.1 CDS HS_1773 NC_008309.1 1992821 1993258 R hypothetical protein complement(1992821..1993258) Haemophilus somnus 129PT 4241307 YP_719979.1 CDS HS_1774 NC_008309.1 1993321 1995321 R hypothetical protein complement(1993321..1995321) Haemophilus somnus 129PT 4241308 YP_719980.1 CDS HS_1775 NC_008309.1 1995333 1996259 R hypothetical protein complement(1995333..1996259) Haemophilus somnus 129PT 4241309 YP_719981.1 CDS HS_1776 NC_008309.1 1996261 1996698 R hypothetical protein complement(1996261..1996698) Haemophilus somnus 129PT 4241310 YP_719982.1 CDS HS_1777 NC_008309.1 1996990 1997430 D hypothetical protein 1996990..1997430 Haemophilus somnus 129PT 4241311 YP_719983.1 CDS HS_1778 NC_008309.1 1997526 1997783 D hypothetical protein 1997526..1997783 Haemophilus somnus 129PT 4241312 YP_719984.1 CDS HS_1779 NC_008309.1 1997780 1998025 D hypothetical protein 1997780..1998025 Haemophilus somnus 129PT 4241313 YP_719985.1 CDS HS_1780 NC_008309.1 1998290 1999258 D antirestriction protein 1998290..1999258 Haemophilus somnus 129PT 4241314 YP_719986.1 CDS HS_1781 NC_008309.1 1999490 1999903 D hypothetical protein 1999490..1999903 Haemophilus somnus 129PT 4241315 YP_719987.1 CDS HS_1782 NC_008309.1 2000019 2000252 D hypothetical protein 2000019..2000252 Haemophilus somnus 129PT 4241316 YP_719988.1 CDS HS_1783 NC_008309.1 2000602 2001069 R hypothetical protein complement(2000602..2001069) Haemophilus somnus 129PT 4241317 YP_719989.1 CDS HS_1784 NC_008309.1 2001071 2001334 R hypothetical protein complement(2001071..2001334) Haemophilus somnus 129PT 4241318 YP_719990.1 CDS HS_1785 NC_008309.1 2001472 2001708 R hypothetical protein complement(2001472..2001708) Haemophilus somnus 129PT 4241319 YP_719991.1 CDS HS_1786 NC_008309.1 2001784 2002053 R hypothetical protein complement(2001784..2002053) Haemophilus somnus 129PT 4241320 YP_719992.1 CDS HS_1787 NC_008309.1 2002226 2003155 D hypothetical protein 2002226..2003155 Haemophilus somnus 129PT 4241321 YP_719993.1 CDS HS_1788 NC_008309.1 2003166 2003639 R hypothetical protein complement(2003166..2003639) Haemophilus somnus 129PT 4241322 YP_719994.1 CDS HS_1789 NC_008309.1 2003858 2004094 D hypothetical protein 2003858..2004094 Haemophilus somnus 129PT 4241323 YP_719995.1 CDS HS_1790 NC_008309.1 2004189 2004617 R hypothetical protein complement(2004189..2004617) Haemophilus somnus 129PT 4241324 YP_719996.1 CDS HS_1791 NC_008309.1 2004619 2005728 R hypothetical protein complement(2004619..2005728) Haemophilus somnus 129PT 4241325 HS_tPseudo01 tRNA HS_tPseudo01 NC_008309.1 1316 1393 D tRNA-OTHER 1316..1393 Haemophilus somnus 129PT 4239507 HS_tAsn03 tRNA HS_tAsn03 NC_008309.1 1397 1475 D tRNA-Asn 1397..1475 Haemophilus somnus 129PT 4239508 HS_tThr01 tRNA HS_tThr01 NC_008309.1 177054 177132 R tRNA-Thr complement(177054..177132) Haemophilus somnus 129PT 4239707 HS_tGly01 tRNA HS_tGly01 NC_008309.1 177133 177210 R tRNA-Gly complement(177133..177210) Haemophilus somnus 129PT 4239708 HS_tTyr01 tRNA HS_tTyr01 NC_008309.1 177250 177337 R tRNA-Tyr complement(177250..177337) Haemophilus somnus 129PT 4239709 HS_tThr02 tRNA HS_tThr02 NC_008309.1 177366 177444 R tRNA-Thr complement(177366..177444) Haemophilus somnus 129PT 4239710 HS_tLys01 tRNA HS_tLys01 NC_008309.1 261158 261236 D tRNA-Lys 261158..261236 Haemophilus somnus 129PT 4239462 HS_tLys03 tRNA HS_tLys03 NC_008309.1 261259 261337 D tRNA-Lys 261259..261337 Haemophilus somnus 129PT 4239463 HS_tLys02 tRNA HS_tLys02 NC_008309.1 261360 261438 D tRNA-Lys 261360..261438 Haemophilus somnus 129PT 4239464 HS_tSer03 tRNA HS_tSer03 NC_008309.1 327339 327431 D tRNA-Ser 327339..327431 Haemophilus somnus 129PT 4239804 HS_tAla03 tRNA HS_tAla03 NC_008309.1 486229 486307 R tRNA-Ala complement(486229..486307) Haemophilus somnus 129PT 4239933 HS_tVal04 tRNA HS_tVal04 NC_008309.1 488009 488087 D tRNA-Val 488009..488087 Haemophilus somnus 129PT 4239935 HS_tVal01 tRNA HS_tVal01 NC_008309.1 488125 488203 D tRNA-Val 488125..488203 Haemophilus somnus 129PT 4239936 HS_tVal02 tRNA HS_tVal02 NC_008309.1 488262 488340 D tRNA-Val 488262..488340 Haemophilus somnus 129PT 4239937 HS_tLeu01 tRNA HS_tLeu01 NC_008309.1 561972 562061 D tRNA-Leu 561972..562061 Haemophilus somnus 129PT 4240001 HS_tAsp02 tRNA HS_tAsp02 NC_008309.1 646388 646467 R tRNA-Asp complement(646388..646467) Haemophilus somnus 129PT 4240087 HS_tAsp03 tRNA HS_tAsp03 NC_008309.1 646493 646572 R tRNA-Asp complement(646493..646572) Haemophilus somnus 129PT 4240088 HS_tMet02 tRNA HS_tMet02 NC_008309.1 766890 766969 R tRNA-Met complement(766890..766969) Haemophilus somnus 129PT 4240206 HS_tSer02 tRNA HS_tSer02 NC_008309.1 772258 772354 D tRNA-Ser 772258..772354 Haemophilus somnus 129PT 4240209 HS_tArg02 tRNA HS_tArg02 NC_008309.1 772362 772441 D tRNA-Arg 772362..772441 Haemophilus somnus 129PT 4240210 HS_tArg03 tRNA HS_tArg03 NC_008309.1 772515 772594 D tRNA-Arg 772515..772594 Haemophilus somnus 129PT 4240211 HS_tMet01 tRNA HS_tMet01 NC_008309.1 893293 893372 D tRNA-Met 893293..893372 Haemophilus somnus 129PT 4240310 HS_tGln01 tRNA HS_tGln01 NC_008309.1 1124187 1124264 R tRNA-Gln complement(1124187..1124264) Haemophilus somnus 129PT 4240514 HS_tGln02 tRNA HS_tGln02 NC_008309.1 1124308 1124385 R tRNA-Gln complement(1124308..1124385) Haemophilus somnus 129PT 4240515 HS_tLeu03 tRNA HS_tLeu03 NC_008309.1 1124410 1124497 R tRNA-Leu complement(1124410..1124497) Haemophilus somnus 129PT 4240516 HS_tMet03 tRNA HS_tMet03 NC_008309.1 1124500 1124579 R tRNA-Met complement(1124500..1124579) Haemophilus somnus 129PT 4240517 HS_tAsn02 tRNA HS_tAsn02 NC_008309.1 1195424 1195502 D tRNA-Asn 1195424..1195502 Haemophilus somnus 129PT 4240577 HS_tGly03 tRNA HS_tGly03 NC_008309.1 1234438 1234516 D tRNA-Gly 1234438..1234516 Haemophilus somnus 129PT 4240601 HS_tArg04 tRNA HS_tArg04 NC_008309.1 1381469 1381548 R tRNA-Arg complement(1381469..1381548) Haemophilus somnus 129PT 4240722 HS_tPro02 tRNA HS_tPro02 NC_008309.1 1381572 1381651 R tRNA-Pro complement(1381572..1381651) Haemophilus somnus 129PT 4240723 HS_tVal03 tRNA HS_tVal03 NC_008309.1 1389530 1389609 R tRNA-Val complement(1389530..1389609) Haemophilus somnus 129PT 4240732 HS_tGlu01 tRNA HS_tGlu01 NC_008309.1 1393084 1393162 R tRNA-Glu complement(1393084..1393162) Haemophilus somnus 129PT 4240735 HS_tPro01 tRNA HS_tPro01 NC_008309.1 1394930 1395009 R tRNA-Pro complement(1394930..1395009) Haemophilus somnus 129PT 4240737 HS_tHis01 tRNA HS_tHis01 NC_008309.1 1395013 1395091 R tRNA-His complement(1395013..1395091) Haemophilus somnus 129PT 4240738 HS_tArg01 tRNA HS_tArg01 NC_008309.1 1395110 1395189 R tRNA-Arg complement(1395110..1395189) Haemophilus somnus 129PT 4240739 HS_tLeu04 tRNA HS_tLeu04 NC_008309.1 1501839 1501927 D tRNA-Leu 1501839..1501927 Haemophilus somnus 129PT 4240823 HS_tGly02 tRNA HS_tGly02 NC_008309.1 1538413 1538491 D tRNA-Gly 1538413..1538491 Haemophilus somnus 129PT 4240858 HS_tCys01 tRNA HS_tCys01 NC_008309.1 1538500 1538576 D tRNA-Cys 1538500..1538576 Haemophilus somnus 129PT 4240859 HS_tLeu02 tRNA HS_tLeu02 NC_008309.1 1538598 1538687 D tRNA-Leu 1538598..1538687 Haemophilus somnus 129PT 4240860 HS_tSer01 tRNA HS_tSer01 NC_008309.1 1610992 1611084 R tRNA-Ser complement(1610992..1611084) Haemophilus somnus 129PT 4240941 HS_tAla01 tRNA HS_tAla01 NC_008309.1 1643712 1643790 R tRNA-Ala complement(1643712..1643790) Haemophilus somnus 129PT 4240971 HS_tIle01 tRNA HS_tIle01 NC_008309.1 1643882 1643961 R tRNA-Ile complement(1643882..1643961) Haemophilus somnus 129PT 4240972 HS_tGlu02 tRNA HS_tGlu02 NC_008309.1 1719333 1719411 R tRNA-Glu complement(1719333..1719411) Haemophilus somnus 129PT 4241042 HS_tTrp01 tRNA HS_tTrp01 NC_008309.1 1774346 1774424 R tRNA-Trp complement(1774346..1774424) Haemophilus somnus 129PT 4241090 HS_tAsp01 tRNA HS_tAsp01 NC_008309.1 1774436 1774515 R tRNA-Asp complement(1774436..1774515) Haemophilus somnus 129PT 4241091 HS_tGlu03 tRNA HS_tGlu03 NC_008309.1 1778112 1778190 R tRNA-Glu complement(1778112..1778190) Haemophilus somnus 129PT 4241094 HS_tIle02 tRNA HS_tIle02 NC_008309.1 1944156 1944235 D tRNA-Ile 1944156..1944235 Haemophilus somnus 129PT 4241244 HS_tAla02 tRNA HS_tAla02 NC_008309.1 1944327 1944405 D tRNA-Ala 1944327..1944405 Haemophilus somnus 129PT 4241245 HS_tPhe01 tRNA HS_tPhe01 NC_008309.1 1952153 1952231 D tRNA-Phe 1952153..1952231 Haemophilus somnus 129PT 4241251 HS_tAsn01 tRNA HS_tAsn01 NC_008309.1 1952251 1952329 D tRNA-Asn 1952251..1952329 Haemophilus somnus 129PT 4241252 HS_r5S02 rRNA HS_r5S02 NC_008309.1 1389669 1389782 R 5S ribosomal RNA complement(1389669..1389782) Haemophilus somnus 129PT 4240733 HS_r23S02 rRNA HS_r23S02 NC_008309.1 1389905 1391628 R 23S ribosomal RNA complement(1389905..1391628) Haemophilus somnus 129PT 4240734 HS_r23S02 rRNA HS_r23S02 NC_008309.1 1391739 1392905 R 23S ribosomal RNA complement(1391739..1392905) Haemophilus somnus 129PT 4240734 HS_r16S02 rRNA HS_r16S02 NC_008309.1 1393238 1394778 R 16S ribosomal RNA complement(1393238..1394778) Haemophilus somnus 129PT 4240736 HS_r5S05 rRNA HS_r5S05 NC_008309.1 1640263 1640376 R 5S ribosomal RNA complement(1640263..1640376) Haemophilus somnus 129PT 4240969 HS_r23S05 rRNA HS_r23S05 NC_008309.1 1640499 1642222 R 23S ribosomal RNA complement(1640499..1642222) Haemophilus somnus 129PT 4240970 HS_r23S05 rRNA HS_r23S05 NC_008309.1 1642333 1643499 R 23S ribosomal RNA complement(1642333..1643499) Haemophilus somnus 129PT 4240970 HS_r16S05 rRNA HS_r16S05 NC_008309.1 1644023 1645563 R 16S ribosomal RNA complement(1644023..1645563) Haemophilus somnus 129PT 4240973 HS_r5S01 rRNA HS_r5S01 NC_008309.1 1715918 1716031 R 5S ribosomal RNA complement(1715918..1716031) Haemophilus somnus 129PT 4241040 HS_r23S01 rRNA HS_r23S01 NC_008309.1 1716154 1717877 R 23S ribosomal RNA complement(1716154..1717877) Haemophilus somnus 129PT 4241041 HS_r23S01 rRNA HS_r23S01 NC_008309.1 1717988 1719154 R 23S ribosomal RNA complement(1717988..1719154) Haemophilus somnus 129PT 4241041 HS_r16S01 rRNA HS_r16S01 NC_008309.1 1719487 1721027 R 16S ribosomal RNA complement(1719487..1721027) Haemophilus somnus 129PT 4241043 HS_r5S06 rRNA HS_r5S06 NC_008309.1 1774526 1774644 R 5S ribosomal RNA complement(1774526..1774644) Haemophilus somnus 129PT 5696433 HS_r5S04 rRNA HS_r5S04 NC_008309.1 1774697 1774810 R 5S ribosomal RNA complement(1774697..1774810) Haemophilus somnus 129PT 4241092 HS_r23S04 rRNA HS_r23S04 NC_008309.1 1774933 1776656 R 23S ribosomal RNA complement(1774933..1776656) Haemophilus somnus 129PT 4241093 HS_r23S04 rRNA HS_r23S04 NC_008309.1 1776767 1777933 R 23S ribosomal RNA complement(1776767..1777933) Haemophilus somnus 129PT 4241093 HS_r16S04 rRNA HS_r16S04 NC_008309.1 1778266 1779806 R 16S ribosomal RNA complement(1778266..1779806) Haemophilus somnus 129PT 4241095 HS_r16S03 rRNA HS_r16S03 NC_008309.1 1942556 1944096 D 16S ribosomal RNA 1942556..1944096 Haemophilus somnus 129PT 4241243 HS_r23S03 rRNA HS_r23S03 NC_008309.1 1944618 1945784 D 23S ribosomal RNA 1944618..1945784 Haemophilus somnus 129PT 4241246 HS_r23S03 rRNA HS_r23S03 NC_008309.1 1945895 1947618 D 23S ribosomal RNA 1945895..1947618 Haemophilus somnus 129PT 4241246 HS_r5S03 rRNA HS_r5S03 NC_008309.1 1947741 1947852 D 5S ribosomal RNA 1947741..1947852 Haemophilus somnus 129PT 4241247