-- dump date 20111121_012535 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_626741.1 108562425 4099339 complement(513..1274) 1 NC_008086.1 hypothetical protein 1274 4099339 HPAG1_1536 Helicobacter pylori HPAG1 hypothetical protein YP_626741.1 513 R 357544 CDS YP_626742.1 108562426 4099340 complement(1529..1945) 1 NC_008086.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1945 nusB 4099340 nusB Helicobacter pylori HPAG1 transcription antitermination protein NusB YP_626742.1 1529 R 357544 CDS YP_626743.1 108562427 4099341 complement(1947..2417) 1 NC_008086.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2417 ribH 4099341 ribH Helicobacter pylori HPAG1 6,7-dimethyl-8-ribityllumazine synthase YP_626743.1 1947 R 357544 CDS YP_626744.1 108562428 4099342 complement(2427..3257) 1 NC_008086.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3257 4099342 HPAG1_0003 Helicobacter pylori HPAG1 2-dehydro-3-deoxyphosphooctonate aldolase YP_626744.1 2427 R 357544 CDS YP_626745.1 108562429 4099343 complement(3244..3909) 1 NC_008086.1 beta-carbonic anhydrase 3909 4099343 HPAG1_0004 Helicobacter pylori HPAG1 beta-carbonic anhydrase YP_626745.1 3244 R 357544 CDS YP_626746.1 108562430 4099344 4032..4715 1 NC_008086.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4715 4099344 HPAG1_0005 Helicobacter pylori HPAG1 orotidine 5'-phosphate decarboxylase YP_626746.1 4032 D 357544 CDS YP_626747.1 108562431 4099345 4716..5546 1 NC_008086.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 5546 panC 4099345 panC Helicobacter pylori HPAG1 pantoate--beta-alanine ligase YP_626747.1 4716 D 357544 CDS YP_626749.1 108562433 4099143 6138..6332 1 NC_008086.1 hypothetical protein 6332 4099143 HPAG1_0008 Helicobacter pylori HPAG1 hypothetical protein YP_626749.1 6138 D 357544 CDS YP_626750.1 108562434 4099144 complement(6598..8493) 1 NC_008086.1 outer membrane protein HopZ 8493 4099144 HPAG1_0009 Helicobacter pylori HPAG1 outer membrane protein HopZ YP_626750.1 6598 R 357544 CDS YP_626751.1 108562435 4099145 complement(8914..10554) 1 NC_008086.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 10554 groEL 4099145 groEL Helicobacter pylori HPAG1 chaperonin GroEL YP_626751.1 8914 R 357544 CDS YP_626752.1 108562436 4099146 complement(10579..10935) 1 NC_008086.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 10935 groES 4099146 groES Helicobacter pylori HPAG1 co-chaperonin GroES YP_626752.1 10579 R 357544 CDS YP_626753.1 108562437 4099147 11222..12901 1 NC_008086.1 synthesizes RNA primers at the replication forks; DNA primase 12901 dnaG 4099147 dnaG Helicobacter pylori HPAG1 DNA primase YP_626753.1 11222 D 357544 CDS YP_626754.1 108562438 4099148 12898..13950 1 NC_008086.1 hypothetical protein 13950 4099148 HPAG1_0013 Helicobacter pylori HPAG1 hypothetical protein YP_626754.1 12898 D 357544 CDS YP_626755.1 108562439 4099149 14035..14865 1 NC_008086.1 hypothetical protein 14865 4099149 HPAG1_0014 Helicobacter pylori HPAG1 hypothetical protein YP_626755.1 14035 D 357544 CDS YP_626756.1 108562440 4099150 15010..15291 1 NC_008086.1 hypothetical protein 15291 4099150 HPAG1_0015 Helicobacter pylori HPAG1 hypothetical protein YP_626756.1 15010 D 357544 CDS YP_626757.1 108562441 4098334 15291..15554 1 NC_008086.1 hypothetical protein 15554 4098334 HPAG1_0016 Helicobacter pylori HPAG1 hypothetical protein YP_626757.1 15291 D 357544 CDS YP_626758.1 108562442 4098335 15556..17919 1 NC_008086.1 ATPase/DNA transfer protein 17919 4098335 HPAG1_0017 Helicobacter pylori HPAG1 ATPase/DNA transfer protein YP_626758.1 15556 D 357544 CDS YP_626759.1 108562443 4098336 18152..19561 1 NC_008086.1 hypothetical protein 19561 4098336 HPAG1_0018 Helicobacter pylori HPAG1 hypothetical protein YP_626759.1 18152 D 357544 CDS YP_626760.1 108562444 4098337 19657..20622 1 NC_008086.1 chemotaxis protein 20622 4098337 HPAG1_0019 Helicobacter pylori HPAG1 chemotaxis protein YP_626760.1 19657 D 357544 CDS YP_626761.1 108562445 4098338 20619..21836 1 NC_008086.1 carboxynorspermidine decarboxylase 21836 4098338 HPAG1_0020 Helicobacter pylori HPAG1 carboxynorspermidine decarboxylase YP_626761.1 20619 D 357544 CDS YP_626762.1 108562446 4098339 complement(21846..22412) 1 NC_008086.1 inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase 22412 4098339 HPAG1_0021 Helicobacter pylori HPAG1 lipid A 1-phosphatase YP_626762.1 21846 R 357544 CDS YP_626763.1 108562447 4098340 complement(22422..23993) 1 NC_008086.1 attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase 23993 4098340 HPAG1_0022 Helicobacter pylori HPAG1 lipid A phosphoethanolamine transferase YP_626763.1 22422 R 357544 CDS YP_626764.1 108562448 4098341 complement(24612..26678) 1 NC_008086.1 outer membrane protein HopD 26678 4098341 HPAG1_0023 Helicobacter pylori HPAG1 outer membrane protein HopD YP_626764.1 24612 R 357544 CDS YP_626765.1 108562449 4098342 complement(27207..28487) 1 NC_008086.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 28487 gltA 4098342 gltA Helicobacter pylori HPAG1 type II citrate synthase YP_626765.1 27207 R 357544 CDS YP_626766.1 108562450 4098343 28696..29973 1 NC_008086.1 isocitrate dehydrogenase 29973 4098343 HPAG1_0025 Helicobacter pylori HPAG1 isocitrate dehydrogenase YP_626766.1 28696 D 357544 CDS YP_626767.1 108562451 4098344 30034..30567 1 NC_008086.1 hypothetical protein 30567 4098344 HPAG1_0026 Helicobacter pylori HPAG1 hypothetical protein YP_626767.1 30034 D 357544 CDS YP_626768.1 108562452 4098345 complement(30544..31200) 1 NC_008086.1 dethiobiotin synthetase 31200 4098345 HPAG1_0027 Helicobacter pylori HPAG1 dethiobiotin synthetase YP_626768.1 30544 R 357544 CDS YP_626769.1 108562453 4098346 complement(31204..32937) 1 NC_008086.1 hypothetical protein 32937 4098346 HPAG1_0028 Helicobacter pylori HPAG1 hypothetical protein YP_626769.1 31204 R 357544 CDS YP_626770.1 108562454 4098347 33046..33459 1 NC_008086.1 hypothetical protein 33459 4098347 HPAG1_0029 Helicobacter pylori HPAG1 hypothetical protein YP_626770.1 33046 D 357544 CDS YP_626771.1 108562455 4098348 33474..33749 1 NC_008086.1 hypothetical protein 33749 4098348 HPAG1_0030 Helicobacter pylori HPAG1 hypothetical protein YP_626771.1 33474 D 357544 CDS YP_626772.1 108562456 4098349 33749..35974 1 NC_008086.1 ATP-dependent C1p protease 35974 4098349 HPAG1_0031 Helicobacter pylori HPAG1 ATP-dependent C1p protease YP_626772.1 33749 D 357544 CDS YP_626773.1 108562457 4098350 35964..36314 1 NC_008086.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 36314 4098350 HPAG1_0032 Helicobacter pylori HPAG1 aspartate alpha-decarboxylase YP_626773.1 35964 D 357544 CDS YP_626774.1 108562458 4098351 36325..36618 1 NC_008086.1 hypothetical protein 36618 4098351 HPAG1_0033 Helicobacter pylori HPAG1 hypothetical protein YP_626774.1 36325 D 357544 CDS YP_626775.1 108562459 4098352 36615..37613 1 NC_008086.1 hypothetical protein 37613 4098352 HPAG1_0034 Helicobacter pylori HPAG1 hypothetical protein YP_626775.1 36615 D 357544 CDS YP_626776.1 108562460 4098499 37621..38676 1 NC_008086.1 NADH-ubiquinone oxidoreductase subunit 38676 4098499 HPAG1_0035 Helicobacter pylori HPAG1 NADH-ubiquinone oxidoreductase subunit YP_626776.1 37621 D 357544 CDS YP_626777.1 108562461 4098500 38692..38805 1 NC_008086.1 comB7 putative lipoprotein 38805 4098500 HPAG1_0036 Helicobacter pylori HPAG1 comB7 putative lipoprotein YP_626777.1 38692 D 357544 CDS YP_626778.1 108562462 4098501 38802..39545 1 NC_008086.1 comB8 competence protein 39545 4098501 HPAG1_0037 Helicobacter pylori HPAG1 comB8 competence protein YP_626778.1 38802 D 357544 CDS YP_626779.1 108562463 4098502 39542..40522 1 NC_008086.1 comB9 competence protein 40522 4098502 HPAG1_0038 Helicobacter pylori HPAG1 comB9 competence protein YP_626779.1 39542 D 357544 CDS YP_626780.1 108562464 4098503 40515..41645 1 NC_008086.1 comB10 competence protein 41645 4098503 HPAG1_0039 Helicobacter pylori HPAG1 comB10 competence protein YP_626780.1 40515 D 357544 CDS YP_626781.1 108562465 4098504 41715..43127 1 NC_008086.1 mannose-6-phosphate isomerase 43127 4098504 HPAG1_0040 Helicobacter pylori HPAG1 mannose-6-phosphate isomerase YP_626781.1 41715 D 357544 CDS YP_626782.1 108562466 4098505 43157..44302 1 NC_008086.1 GDP-D-mannose dehydratase 44302 4098505 HPAG1_0041 Helicobacter pylori HPAG1 GDP-D-mannose dehydratase YP_626782.1 43157 D 357544 CDS YP_626783.1 108562467 4098506 44295..45227 1 NC_008086.1 GDP-fucose synthetase 45227 4098506 HPAG1_0042 Helicobacter pylori HPAG1 GDP-fucose synthetase YP_626783.1 44295 D 357544 CDS YP_626784.1 108562468 4098507 complement(45541..46539) 1 NC_008086.1 hydrogenase expression/formation protein 46539 4098507 HPAG1_0043 Helicobacter pylori HPAG1 hydrogenase expression/formation protein YP_626784.1 45541 R 357544 CDS YP_626785.1 108562469 4098508 complement(46542..48851) 1 NC_008086.1 transcriptional regulator 48851 4098508 HPAG1_0044 Helicobacter pylori HPAG1 transcriptional regulator YP_626785.1 46542 R 357544 CDS YP_626786.1 108562470 4098509 complement(48791..49783) 1 NC_008086.1 hypothetical protein 49783 4098509 HPAG1_0045 Helicobacter pylori HPAG1 hypothetical protein YP_626786.1 48791 R 357544 CDS YP_626787.1 108562471 4098510 complement(49843..50535) 1 NC_008086.1 adenine specific DNA methyltransferase 50535 4098510 HPAG1_0046 Helicobacter pylori HPAG1 adenine specific DNA methyltransferase YP_626787.1 49843 R 357544 CDS YP_626788.1 108562472 4098511 complement(50532..51599) 1 NC_008086.1 cytosine specific DNA methyltransferase 51599 4098511 HPAG1_0047 Helicobacter pylori HPAG1 cytosine specific DNA methyltransferase YP_626788.1 50532 R 357544 CDS YP_626789.1 108562473 4098512 complement(51621..52652) 1 NC_008086.1 type II DNA modification enzyme 52652 4098512 HPAG1_0048 Helicobacter pylori HPAG1 type II DNA modification enzyme YP_626789.1 51621 R 357544 CDS YP_626790.1 108562474 4098513 complement(52662..53231) 1 NC_008086.1 type II restriction enzyme 53231 4098513 HPAG1_0049 Helicobacter pylori HPAG1 type II restriction enzyme YP_626790.1 52662 R 357544 CDS YP_626791.1 108562475 4098514 complement(53219..53443) 1 NC_008086.1 type II restriction enzyme 53443 4098514 HPAG1_0050 Helicobacter pylori HPAG1 type II restriction enzyme YP_626791.1 53219 R 357544 CDS YP_626792.1 108562476 4098515 complement(53634..53777) 1 NC_008086.1 adenine/cytosine DNA methyltransferase 53777 4098515 HPAG1_0051 Helicobacter pylori HPAG1 adenine/cytosine DNA methyltransferase YP_626792.1 53634 R 357544 CDS YP_626793.1 108562477 4098516 complement(53815..55305) 1 NC_008086.1 sodium/proline symporter 55305 4098516 HPAG1_0052 Helicobacter pylori HPAG1 sodium/proline symporter YP_626793.1 53815 R 357544 CDS YP_626794.1 108562478 4098517 complement(55332..58889) 1 NC_008086.1 proline/delta 1-pyrroline-5-carboxylate dehydrogenase 58889 4098517 HPAG1_0053 Helicobacter pylori HPAG1 proline/delta 1-pyrroline-5-carboxylate dehydrogenase YP_626794.1 55332 R 357544 CDS YP_626795.1 108562479 4098518 59216..59425 1 NC_008086.1 hypothetical protein 59425 4098518 HPAG1_0054 Helicobacter pylori HPAG1 hypothetical protein YP_626795.1 59216 D 357544 CDS YP_626796.1 108562480 4098461 59510..59701 1 NC_008086.1 M-protein 59701 4098461 HPAG1_0055 Helicobacter pylori HPAG1 M-protein YP_626796.1 59510 D 357544 CDS YP_626797.1 108562481 4098462 59932..60528 1 NC_008086.1 hypothetical protein 60528 4098462 HPAG1_0056 Helicobacter pylori HPAG1 hypothetical protein YP_626797.1 59932 D 357544 CDS YP_626798.1 108562482 4098463 60529..61278 1 NC_008086.1 hypothetical protein 61278 4098463 HPAG1_0057 Helicobacter pylori HPAG1 hypothetical protein YP_626798.1 60529 D 357544 CDS YP_626799.1 108562483 4098464 61289..62494 1 NC_008086.1 hypothetical protein 62494 4098464 HPAG1_0058 Helicobacter pylori HPAG1 hypothetical protein YP_626799.1 61289 D 357544 CDS YP_626800.1 108562484 4098465 62404..63639 1 NC_008086.1 hypothetical protein 63639 4098465 HPAG1_0059 Helicobacter pylori HPAG1 hypothetical protein YP_626800.1 62404 D 357544 CDS YP_626801.1 108562485 4098466 63640..63738 1 NC_008086.1 hypothetical protein 63738 4098466 HPAG1_0060 Helicobacter pylori HPAG1 hypothetical protein YP_626801.1 63640 D 357544 CDS YP_626802.1 108562486 4098467 63764..64303 1 NC_008086.1 hypothetical protein 64303 4098467 HPAG1_0061 Helicobacter pylori HPAG1 hypothetical protein YP_626802.1 63764 D 357544 CDS YP_626803.1 108562487 4098468 64319..64579 1 NC_008086.1 hypothetical protein 64579 4098468 HPAG1_0062 Helicobacter pylori HPAG1 hypothetical protein YP_626803.1 64319 D 357544 CDS YP_626804.1 108562488 4098469 64589..66394 1 NC_008086.1 hypothetical protein 66394 4098469 HPAG1_0063 Helicobacter pylori HPAG1 hypothetical protein YP_626804.1 64589 D 357544 CDS YP_626805.1 108562489 4098470 66364..66783 1 NC_008086.1 hypothetical protein 66783 4098470 HPAG1_0064 Helicobacter pylori HPAG1 hypothetical protein YP_626805.1 66364 D 357544 CDS YP_626806.1 108562490 4098471 66785..67138 1 NC_008086.1 hypothetical protein 67138 4098471 HPAG1_0065 Helicobacter pylori HPAG1 hypothetical protein YP_626806.1 66785 D 357544 CDS YP_626807.1 108562491 4098472 67131..67745 1 NC_008086.1 ATP-binding protein 67745 4098472 HPAG1_0066 Helicobacter pylori HPAG1 ATP-binding protein YP_626807.1 67131 D 357544 CDS YP_626808.1 108562492 4098473 67751..69562 1 NC_008086.1 ATP-binding protein 69562 4098473 HPAG1_0067 Helicobacter pylori HPAG1 ATP-binding protein YP_626808.1 67751 D 357544 CDS YP_626809.1 108562493 4098474 complement(69707..70504) 1 NC_008086.1 urease accessory protein UreH 70504 4098474 HPAG1_0068 Helicobacter pylori HPAG1 urease accessory protein UreH YP_626809.1 69707 R 357544 CDS YP_626810.1 108562494 4098475 complement(70504..71103) 1 NC_008086.1 urease accessory protein UreG 71103 4098475 HPAG1_0069 Helicobacter pylori HPAG1 urease accessory protein UreG YP_626810.1 70504 R 357544 CDS YP_626811.1 108562495 4098476 complement(71132..71899) 1 NC_008086.1 urease accessory protein UreF 71899 4098476 HPAG1_0070 Helicobacter pylori HPAG1 urease accessory protein UreF YP_626811.1 71132 R 357544 CDS YP_626812.1 108562496 4098477 complement(71911..72423) 1 NC_008086.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 72423 ureE 4098477 ureE Helicobacter pylori HPAG1 urease accessory protein UreE YP_626812.1 71911 R 357544 CDS YP_626813.1 108562497 4098478 complement(72425..73012) 1 NC_008086.1 urease accessory protein/pH-dependent urea-transporter UreI 73012 4098478 HPAG1_0072 Helicobacter pylori HPAG1 urease accessory protein/pH-dependent urea-transporter UreI YP_626813.1 72425 R 357544 CDS YP_626814.1 108562498 4098479 complement(73205..74914) 1 NC_008086.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit beta 74914 ureB 4098479 ureB Helicobacter pylori HPAG1 urease subunit beta YP_626814.1 73205 R 357544 CDS YP_626815.1 108562499 4099022 complement(74918..75634) 1 NC_008086.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit alpha 75634 ureA 4099022 ureA Helicobacter pylori HPAG1 urease subunit alpha YP_626815.1 74918 R 357544 CDS YP_626816.1 108562500 4099024 complement(75980..76453) 1 NC_008086.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 76453 lspA 4099024 lspA Helicobacter pylori HPAG1 lipoprotein signal peptidase YP_626816.1 75980 R 357544 CDS YP_626817.1 108562501 4099025 complement(76447..77784) 1 NC_008086.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 77784 glmM 4099025 glmM Helicobacter pylori HPAG1 phosphoglucosamine mutase YP_626817.1 76447 R 357544 CDS YP_626818.1 108562502 4099026 77874..78143 1 NC_008086.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 78143 rpsT 4099026 rpsT Helicobacter pylori HPAG1 30S ribosomal protein S20 YP_626818.1 77874 D 357544 CDS YP_626819.1 108562503 4099027 78268..79326 1 NC_008086.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 79326 prfA 4099027 prfA Helicobacter pylori HPAG1 peptide chain release factor 1 YP_626819.1 78268 D 357544 CDS YP_626820.1 108562504 4099028 79739..79996 1 NC_008086.1 reminiscent outer membrane protein HorA 79996 4099028 HPAG1_0079 Helicobacter pylori HPAG1 reminiscent outer membrane protein HorA YP_626820.1 79739 D 357544 CDS YP_626821.1 108562505 4099029 80008..81711 1 NC_008086.1 outer membrane protein HorA 81711 4099029 HPAG1_0080 Helicobacter pylori HPAG1 outer membrane protein HorA YP_626821.1 80008 D 357544 CDS YP_626822.1 108562506 4099030 81957..83693 1 NC_008086.1 hypothetical protein 83693 4099030 HPAG1_0081 Helicobacter pylori HPAG1 hypothetical protein YP_626822.1 81957 D 357544 CDS YP_626823.1 108562507 4099031 83867..83977 1 NC_008086.1 hypothetical protein 83977 4099031 HPAG1_0082 Helicobacter pylori HPAG1 hypothetical protein YP_626823.1 83867 D 357544 CDS YP_626824.1 108562508 4099032 complement(84115..86136) 1 NC_008086.1 methyl-accepting chemotaxis protein 86136 4099032 HPAG1_0083 Helicobacter pylori HPAG1 methyl-accepting chemotaxis protein YP_626824.1 84115 R 357544 CDS YP_626825.1 108562509 4099033 complement(86288..86677) 1 NC_008086.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 86677 rpsI 4099033 rpsI Helicobacter pylori HPAG1 30S ribosomal protein S9 YP_626825.1 86288 R 357544 CDS YP_626826.1 108562510 4099034 complement(86674..87099) 1 NC_008086.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 87099 rplM 4099034 rplM Helicobacter pylori HPAG1 50S ribosomal protein L13 YP_626826.1 86674 R 357544 CDS YP_626827.1 108562511 4099035 complement(87403..87591) 1 NC_008086.1 hypothetical protein 87591 4099035 HPAG1_0086 Helicobacter pylori HPAG1 hypothetical protein YP_626827.1 87403 R 357544 CDS YP_626828.1 108562512 4099036 complement(87598..88950) 1 NC_008086.1 hypothetical protein 88950 4099036 HPAG1_0087 Helicobacter pylori HPAG1 hypothetical protein YP_626828.1 87598 R 357544 CDS YP_626829.1 108562513 4099037 complement(89004..90377) 1 NC_008086.1 hypothetical protein 90377 4099037 HPAG1_0088 Helicobacter pylori HPAG1 hypothetical protein YP_626829.1 89004 R 357544 CDS YP_626830.1 108562514 4099038 complement(90398..92476) 1 NC_008086.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 92476 4099038 HPAG1_0089 Helicobacter pylori HPAG1 RNA polymerase sigma factor RpoD YP_626830.1 90398 R 357544 CDS YP_626831.1 108562515 4099039 complement(92666..93361) 1 NC_008086.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 93361 4099039 HPAG1_0090 Helicobacter pylori HPAG1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_626831.1 92666 R 357544 CDS YP_626832.1 108562516 4099040 complement(93372..94301) 1 NC_008086.1 acyl-carrier-protein S-malonyltransferase 94301 4099040 HPAG1_0091 Helicobacter pylori HPAG1 acyl-carrier-protein S-malonyltransferase YP_626832.1 93372 R 357544 CDS YP_626833.1 108562517 4099185 94738..95736 1 NC_008086.1 HrgA protein 95736 4099185 HPAG1_0092 Helicobacter pylori HPAG1 HrgA protein YP_626833.1 94738 D 357544 CDS YP_626834.1 108562518 4099186 95740..96561 1 NC_008086.1 type II adenine methyltransferase 96561 4099186 HPAG1_0093 Helicobacter pylori HPAG1 type II adenine methyltransferase YP_626834.1 95740 D 357544 CDS YP_626835.1 108562519 4099187 complement(96584..97489) 1 NC_008086.1 alpha-1,2-fucosyltransferase 97489 4099187 HPAG1_0094 Helicobacter pylori HPAG1 alpha-1,2-fucosyltransferase YP_626835.1 96584 R 357544 CDS YP_626836.1 108562520 4099188 complement(97585..98115) 1 NC_008086.1 hypothetical protein 98115 4099188 HPAG1_0095 Helicobacter pylori HPAG1 hypothetical protein YP_626836.1 97585 R 357544 CDS YP_626837.1 108562521 4099189 98188..99132 1 NC_008086.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 99132 4099189 HPAG1_0096 Helicobacter pylori HPAG1 2-hydroxyacid dehydrogenase YP_626837.1 98188 D 357544 CDS YP_626838.1 108562522 4099190 complement(99279..99992) 1 NC_008086.1 hypothetical protein 99992 4099190 HPAG1_0097 Helicobacter pylori HPAG1 hypothetical protein YP_626838.1 99279 R 357544 CDS YP_626839.1 108562523 4099191 complement(100097..101557) 1 NC_008086.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 101557 4099191 HPAG1_0098 Helicobacter pylori HPAG1 threonine synthase YP_626839.1 100097 R 357544 CDS YP_626840.1 108562524 4099192 101761..103788 1 NC_008086.1 methyl-accepting chemotaxis transmembrane sensory protein 103788 4099192 HPAG1_0099 Helicobacter pylori HPAG1 methyl-accepting chemotaxis transmembrane sensory protein YP_626840.1 101761 D 357544 CDS YP_626841.1 108562525 4099193 103788..104894 1 NC_008086.1 hypothetical protein 104894 4099193 HPAG1_0100 Helicobacter pylori HPAG1 hypothetical protein YP_626841.1 103788 D 357544 CDS YP_626842.1 108562526 4099194 105008..105769 1 NC_008086.1 hypothetical protein 105769 4099194 HPAG1_0101 Helicobacter pylori HPAG1 hypothetical protein YP_626842.1 105008 D 357544 CDS YP_626843.1 108562527 4099195 complement(105752..106531) 1 NC_008086.1 hypothetical protein 106531 4099195 HPAG1_0102 Helicobacter pylori HPAG1 hypothetical protein YP_626843.1 105752 R 357544 CDS YP_626844.1 108562528 4099196 complement(106562..108259) 1 NC_008086.1 methyl-accepting chemotaxis protein 108259 4099196 HPAG1_0103 Helicobacter pylori HPAG1 methyl-accepting chemotaxis protein YP_626844.1 106562 R 357544 CDS YP_626845.1 108562529 4099197 complement(108461..110206) 1 NC_008086.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase 110206 4099197 HPAG1_0104 Helicobacter pylori HPAG1 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_626845.1 108461 R 357544 CDS YP_626846.1 108562530 4099198 complement(110374..110841) 1 NC_008086.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 110841 4099198 HPAG1_0105 Helicobacter pylori HPAG1 S-ribosylhomocysteinase YP_626846.1 110374 R 357544 CDS YP_626847.1 108562531 4099199 complement(110879..112021) 1 NC_008086.1 catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine; cystathionine gamma-synthase/cystathionine beta-lyase 112021 4099199 HPAG1_0106 Helicobacter pylori HPAG1 cystathionine gamma-synthase/cystathionine beta-lyase YP_626847.1 110879 R 357544 CDS YP_626848.1 108562532 4099200 complement(112042..112962) 1 NC_008086.1 cysteine synthetase 112962 4099200 HPAG1_0107 Helicobacter pylori HPAG1 cysteine synthetase YP_626848.1 112042 R 357544 CDS YP_626849.1 108562533 4099201 113121..113642 1 NC_008086.1 hypothetical protein 113642 4099201 HPAG1_0108 Helicobacter pylori HPAG1 hypothetical protein YP_626849.1 113121 D 357544 CDS YP_626850.1 108562534 4097903 complement(113876..115738) 1 NC_008086.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 115738 dnaK 4097903 dnaK Helicobacter pylori HPAG1 molecular chaperone DnaK YP_626850.1 113876 R 357544 CDS YP_626851.1 108562535 4097904 complement(115769..116344) 1 NC_008086.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 116344 4097904 HPAG1_0110 Helicobacter pylori HPAG1 heat shock protein GrpE YP_626851.1 115769 R 357544 CDS YP_626852.1 108562536 4097905 complement(116344..117174) 1 NC_008086.1 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 117174 4097905 HPAG1_0111 Helicobacter pylori HPAG1 heat-inducible transcription repressor YP_626852.1 116344 R 357544 CDS YP_626853.1 108562537 4097906 117385..118023 1 NC_008086.1 hypothetical protein 118023 4097906 HPAG1_0112 Helicobacter pylori HPAG1 hypothetical protein YP_626853.1 117385 D 357544 CDS YP_626854.1 108562538 4097907 118044..118340 1 NC_008086.1 hypothetical protein 118340 4097907 HPAG1_0113 Helicobacter pylori HPAG1 hypothetical protein YP_626854.1 118044 D 357544 CDS YP_626855.1 108562539 4097908 complement(118350..120236) 1 NC_008086.1 hypothetical protein 120236 4097908 HPAG1_0114 Helicobacter pylori HPAG1 hypothetical protein YP_626855.1 118350 R 357544 CDS YP_626856.1 108562540 4097909 complement(120296..121840) 1 NC_008086.1 FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B 121840 4097909 HPAG1_0115 Helicobacter pylori HPAG1 flagellin B YP_626856.1 120296 R 357544 CDS YP_626857.1 108562541 4097910 122006..124216 1 NC_008086.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 124216 4097910 HPAG1_0116 Helicobacter pylori HPAG1 DNA topoisomerase I YP_626857.1 122006 D 357544 CDS YP_626858.1 108562542 4097911 124209..125135 1 NC_008086.1 hypothetical protein 125135 4097911 HPAG1_0117 Helicobacter pylori HPAG1 hypothetical protein YP_626858.1 124209 D 357544 CDS YP_626859.1 108562543 4097912 complement(125275..126492) 1 NC_008086.1 hypothetical protein 126492 4097912 HPAG1_0118 Helicobacter pylori HPAG1 hypothetical protein YP_626859.1 125275 R 357544 CDS YP_626860.1 108562544 4097913 complement(126777..128009) 1 NC_008086.1 hypothetical protein 128009 4097913 HPAG1_0119 Helicobacter pylori HPAG1 hypothetical protein YP_626860.1 126777 R 357544 CDS YP_626861.1 108562545 4097914 complement(128097..130535) 1 NC_008086.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 130535 4097914 HPAG1_0120 Helicobacter pylori HPAG1 phosphoenolpyruvate synthase YP_626861.1 128097 R 357544 CDS YP_626862.1 108562546 4097915 130715..130852 1 NC_008086.1 hypothetical protein 130852 4097915 HPAG1_0121 Helicobacter pylori HPAG1 hypothetical protein YP_626862.1 130715 D 357544 CDS YP_626863.1 108562547 4097916 130909..132747 1 NC_008086.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 132747 thrS 4097916 thrS Helicobacter pylori HPAG1 threonyl-tRNA synthetase YP_626863.1 130909 D 357544 CDS YP_626864.1 108562548 4097917 132744..133355 1 NC_008086.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 133355 infC 4097917 infC Helicobacter pylori HPAG1 translation initiation factor IF-3 YP_626864.1 132744 D 357544 CDS YP_626865.1 108562549 4097918 133336..133530 1 NC_008086.1 50S ribosomal protein L35 133530 rpmI 4097918 rpmI Helicobacter pylori HPAG1 50S ribosomal protein L35 YP_626865.1 133336 D 357544 CDS YP_626866.1 108562550 4097919 133624..133974 1 NC_008086.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 133974 rplT 4097919 rplT Helicobacter pylori HPAG1 50S ribosomal protein L20 YP_626866.1 133624 D 357544 CDS YP_626867.1 108562551 4097920 134174..135034 1 NC_008086.1 outer membrane protein HorB 135034 4097920 HPAG1_0126 Helicobacter pylori HPAG1 outer membrane protein HorB YP_626867.1 134174 D 357544 CDS YP_626868.1 108562552 4097921 135086..135211 1 NC_008086.1 hypothetical protein 135211 4097921 HPAG1_0127 Helicobacter pylori HPAG1 hypothetical protein YP_626868.1 135086 D 357544 CDS YP_626869.1 108562553 4097922 135378..135809 1 NC_008086.1 hypothetical protein 135809 4097922 HPAG1_0128 Helicobacter pylori HPAG1 hypothetical protein YP_626869.1 135378 D 357544 CDS YP_626870.1 108562554 4099151 136221..137081 1 NC_008086.1 hypothetical protein 137081 4099151 HPAG1_0129 Helicobacter pylori HPAG1 hypothetical protein YP_626870.1 136221 D 357544 CDS YP_626871.1 108562555 4099152 complement(137683..139050) 1 NC_008086.1 L-serine deaminase 139050 4099152 HPAG1_0130 Helicobacter pylori HPAG1 L-serine deaminase YP_626871.1 137683 R 357544 CDS YP_626872.1 108562556 4099153 complement(139050..140291) 1 NC_008086.1 L-serine transporter 140291 4099153 HPAG1_0131 Helicobacter pylori HPAG1 L-serine transporter YP_626872.1 139050 R 357544 CDS YP_626873.1 108562557 4099154 140473..141822 1 NC_008086.1 tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 141822 4099154 HPAG1_0132 Helicobacter pylori HPAG1 tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase YP_626873.1 140473 D 357544 CDS YP_626874.1 108562558 4099155 142115..142249 1 NC_008086.1 hypothetical protein 142249 4099155 HPAG1_0133 Helicobacter pylori HPAG1 hypothetical protein YP_626874.1 142115 D 357544 CDS YP_626875.1 108562559 4099156 complement(142480..142938) 1 NC_008086.1 bacterioferritin comigratory protein 142938 4099156 HPAG1_0134 Helicobacter pylori HPAG1 bacterioferritin comigratory protein YP_626875.1 142480 R 357544 CDS YP_626876.1 108562560 4099157 complement(142948..143583) 1 NC_008086.1 hypothetical protein 143583 4099157 HPAG1_0135 Helicobacter pylori HPAG1 hypothetical protein YP_626876.1 142948 R 357544 CDS YP_626877.1 108562561 4099158 complement(143576..145021) 1 NC_008086.1 putative iron-sulfur protein 145021 4099158 HPAG1_0136 Helicobacter pylori HPAG1 putative iron-sulfur protein YP_626877.1 143576 R 357544 CDS YP_626878.1 108562562 4099159 complement(145051..145779) 1 NC_008086.1 hypothetical protein 145779 4099159 HPAG1_0137 Helicobacter pylori HPAG1 hypothetical protein YP_626878.1 145051 R 357544 CDS YP_626879.1 108562563 4099160 145999..147648 1 NC_008086.1 L-lactate permease 147648 4099160 HPAG1_0138 Helicobacter pylori HPAG1 L-lactate permease YP_626879.1 145999 D 357544 CDS YP_626880.1 108562564 4099161 147698..149353 1 NC_008086.1 L-lactate permease 149353 4099161 HPAG1_0139 Helicobacter pylori HPAG1 L-lactate permease YP_626880.1 147698 D 357544 CDS YP_626881.1 108562565 4099162 complement(149377..150363) 1 NC_008086.1 DNA glycosylase MutY 150363 4099162 HPAG1_0140 Helicobacter pylori HPAG1 DNA glycosylase MutY YP_626881.1 149377 R 357544 CDS YP_626882.1 108562566 4099163 complement(150364..151812) 1 NC_008086.1 C(4)-dicarboxylates and tricarboxylates/succinate antiporter 151812 4099163 HPAG1_0141 Helicobacter pylori HPAG1 C(4)-dicarboxylates and tricarboxylates/succinate antiporter YP_626882.1 150364 R 357544 CDS YP_626883.1 108562567 4099164 151982..153448 1 NC_008086.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 153448 4099164 HPAG1_0142 Helicobacter pylori HPAG1 cbb3-type cytochrome c oxidase subunit I YP_626883.1 151982 D 357544 CDS YP_626884.1 108562568 4099165 153461..154159 1 NC_008086.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 154159 4099165 HPAG1_0143 Helicobacter pylori HPAG1 cbb3-type cytochrome c oxidase subunit II YP_626884.1 153461 D 357544 CDS YP_626885.1 108562569 4099166 154167..154388 1 NC_008086.1 cytochrome c oxidase subunit Q 154388 4099166 HPAG1_0144 Helicobacter pylori HPAG1 cytochrome c oxidase subunit Q YP_626885.1 154167 D 357544 CDS YP_626886.1 108562570 4099167 154390..155268 1 NC_008086.1 cytochrome c oxidase diheme subunit 155268 4099167 HPAG1_0145 Helicobacter pylori HPAG1 cytochrome c oxidase diheme subunit YP_626886.1 154390 D 357544 CDS YP_626887.1 108562571 4099168 155279..155485 1 NC_008086.1 hypothetical protein 155485 4099168 HPAG1_0146 Helicobacter pylori HPAG1 hypothetical protein YP_626887.1 155279 D 357544 CDS YP_626888.1 108562572 4099169 155586..156170 1 NC_008086.1 hypothetical protein 156170 4099169 HPAG1_0147 Helicobacter pylori HPAG1 hypothetical protein YP_626888.1 155586 D 357544 CDS YP_626889.1 108562573 4098983 156183..156773 1 NC_008086.1 hypothetical protein 156773 4098983 HPAG1_0148 Helicobacter pylori HPAG1 hypothetical protein YP_626889.1 156183 D 357544 CDS YP_626890.1 108562574 4098984 156854..157621 1 NC_008086.1 hypothetical protein 157621 4098984 HPAG1_0149 Helicobacter pylori HPAG1 hypothetical protein YP_626890.1 156854 D 357544 CDS YP_626891.1 108562575 4098985 complement(157618..158481) 1 NC_008086.1 hypothetical protein 158481 4098985 HPAG1_0150 Helicobacter pylori HPAG1 hypothetical protein YP_626891.1 157618 R 357544 CDS YP_626892.1 108562576 4098986 158580..159623 1 NC_008086.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 159623 recA 4098986 recA Helicobacter pylori HPAG1 recombinase A YP_626892.1 158580 D 357544 CDS YP_626893.1 108562577 4098987 159636..160916 1 NC_008086.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 160916 eno 4098987 eno Helicobacter pylori HPAG1 phosphopyruvate hydratase YP_626893.1 159636 D 357544 CDS YP_626894.1 108562578 4098988 160909..161184 1 NC_008086.1 hypothetical protein 161184 4098988 HPAG1_0153 Helicobacter pylori HPAG1 hypothetical protein YP_626894.1 160909 D 357544 CDS YP_626895.1 108562579 4098989 161196..161798 1 NC_008086.1 hypothetical protein 161798 4098989 HPAG1_0154 Helicobacter pylori HPAG1 hypothetical protein YP_626895.1 161196 D 357544 CDS YP_626896.1 108562580 4098990 161803..162291 1 NC_008086.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 162291 aroK 4098990 aroK Helicobacter pylori HPAG1 shikimate kinase YP_626896.1 161803 D 357544 CDS YP_626897.1 108562581 4098991 162312..163268 1 NC_008086.1 hypothetical protein 163268 4098991 HPAG1_0156 Helicobacter pylori HPAG1 hypothetical protein YP_626897.1 162312 D 357544 CDS YP_626898.1 108562582 4098992 complement(163265..164383) 1 NC_008086.1 lipopolysaccharide 1,2-glycosyltransferase 164383 4098992 HPAG1_0157 Helicobacter pylori HPAG1 lipopolysaccharide 1,2-glycosyltransferase YP_626898.1 163265 R 357544 CDS YP_626899.1 108562583 4098993 164535..165455 1 NC_008086.1 cysteine-rich protein D 165455 4098993 HPAG1_0158 Helicobacter pylori HPAG1 cysteine-rich protein D YP_626899.1 164535 D 357544 CDS YP_626900.1 108562584 4098994 complement(165996..166718) 1 NC_008086.1 hypothetical protein 166718 4098994 HPAG1_0159 Helicobacter pylori HPAG1 hypothetical protein YP_626900.1 165996 R 357544 CDS YP_626901.1 108562585 4098995 complement(166719..167690) 1 NC_008086.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 167690 4098995 HPAG1_0160 Helicobacter pylori HPAG1 delta-aminolevulinic acid dehydratase YP_626901.1 166719 R 357544 CDS YP_626902.1 108562586 4098996 complement(167762..169045) 1 NC_008086.1 putative histidine kinase sensor protein 169045 4098996 HPAG1_0161 Helicobacter pylori HPAG1 putative histidine kinase sensor protein YP_626902.1 167762 R 357544 CDS YP_626903.1 108562587 4098997 complement(169071..169748) 1 NC_008086.1 response regulator 169748 4098997 HPAG1_0162 Helicobacter pylori HPAG1 response regulator YP_626903.1 169071 R 357544 CDS YP_626904.1 108562588 4098998 complement(169980..170456) 1 NC_008086.1 hypothetical protein 170456 4098998 HPAG1_0163 Helicobacter pylori HPAG1 hypothetical protein YP_626904.1 169980 R 357544 CDS YP_626905.1 108562589 4098999 complement(170435..170698) 1 NC_008086.1 hypothetical protein 170698 4098999 HPAG1_0164 Helicobacter pylori HPAG1 hypothetical protein YP_626905.1 170435 R 357544 CDS YP_626906.1 108562590 4099000 complement(170745..172013) 1 NC_008086.1 collagenase 172013 4099000 HPAG1_0165 Helicobacter pylori HPAG1 collagenase YP_626906.1 170745 R 357544 CDS YP_626907.1 108562591 4099001 complement(172016..172747) 1 NC_008086.1 hypothetical protein 172747 4099001 HPAG1_0166 Helicobacter pylori HPAG1 hypothetical protein YP_626907.1 172016 R 357544 CDS YP_626908.1 108562592 4099002 complement(172822..173913) 1 NC_008086.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 173913 prfB 4099002 prfB Helicobacter pylori HPAG1 peptide chain release factor 2 YP_626908.1 172822 R 357544 CDS YP_626909.1 108562593 4098056 complement(173974..175149) 1 NC_008086.1 molybdopterin biosynthesis protein 175149 4098056 HPAG1_0168 Helicobacter pylori HPAG1 molybdopterin biosynthesis protein YP_626909.1 173974 R 357544 CDS YP_626910.1 108562594 4098057 complement(175159..175926) 1 NC_008086.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 175926 fliR 4098057 fliR Helicobacter pylori HPAG1 flagellar biosynthesis protein FliR YP_626910.1 175159 R 357544 CDS YP_626911.1 108562595 4098058 complement(175920..176648) 1 NC_008086.1 hypothetical protein 176648 4098058 HPAG1_0170 Helicobacter pylori HPAG1 hypothetical protein YP_626911.1 175920 R 357544 CDS YP_626912.1 108562596 4098059 177121..178020 1 NC_008086.1 peptidyl-prolyl cis-trans isomerase C 178020 4098059 HPAG1_0171 Helicobacter pylori HPAG1 peptidyl-prolyl cis-trans isomerase C YP_626912.1 177121 D 357544 CDS YP_626913.1 108562597 4098060 178037..178960 1 NC_008086.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 178960 4098060 HPAG1_0172 Helicobacter pylori HPAG1 fructose-bisphosphate aldolase YP_626913.1 178037 D 357544 CDS YP_626914.1 108562598 4098061 178982..179545 1 NC_008086.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 179545 4098061 HPAG1_0173 Helicobacter pylori HPAG1 elongation factor P YP_626914.1 178982 D 357544 CDS YP_626915.1 108562599 4098062 180226..180495 1 NC_008086.1 hypothetical protein 180495 4098062 HPAG1_0174 Helicobacter pylori HPAG1 hypothetical protein YP_626915.1 180226 D 357544 CDS YP_626916.1 108562600 4098063 complement(180487..181509) 1 NC_008086.1 sialic acid synthase 181509 4098063 HPAG1_0175 Helicobacter pylori HPAG1 sialic acid synthase YP_626916.1 180487 R 357544 CDS YP_626917.1 108562601 4098064 complement(181513..182154) 1 NC_008086.1 ABC transporter 182154 4098064 HPAG1_0176 Helicobacter pylori HPAG1 ABC transporter YP_626917.1 181513 R 357544 CDS YP_626918.1 108562602 4098065 complement(182154..183428) 1 NC_008086.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 183428 4098065 HPAG1_0177 Helicobacter pylori HPAG1 apolipoprotein N-acyltransferase YP_626918.1 182154 R 357544 CDS YP_626919.1 108562603 4098066 183653..184354 1 NC_008086.1 hypothetical protein 184354 4098066 HPAG1_0178 Helicobacter pylori HPAG1 hypothetical protein YP_626919.1 183653 D 357544 CDS YP_626920.1 108562604 4098067 184364..185869 1 NC_008086.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 185869 lysS 4098067 lysS Helicobacter pylori HPAG1 lysyl-tRNA synthetase YP_626920.1 184364 D 357544 CDS YP_626921.1 108562605 4098068 185869..187119 1 NC_008086.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 187119 glyA 4098068 glyA Helicobacter pylori HPAG1 serine hydroxymethyltransferase YP_626921.1 185869 D 357544 CDS YP_626922.1 108562606 4098069 187130..187672 1 NC_008086.1 hypothetical protein 187672 4098069 HPAG1_0181 Helicobacter pylori HPAG1 hypothetical protein YP_626922.1 187130 D 357544 CDS YP_626923.1 108562607 4098070 187694..188503 1 NC_008086.1 hypothetical protein 188503 4098070 HPAG1_0182 Helicobacter pylori HPAG1 hypothetical protein YP_626923.1 187694 D 357544 CDS YP_626924.1 108562608 4098071 189275..189808 1 NC_008086.1 hypothetical protein 189808 4098071 HPAG1_0183 Helicobacter pylori HPAG1 hypothetical protein YP_626924.1 189275 D 357544 CDS YP_626925.1 108562609 4098072 complement(189814..191322) 1 NC_008086.1 phospholipase D-family protein 191322 4098072 HPAG1_0184 Helicobacter pylori HPAG1 phospholipase D-family protein YP_626925.1 189814 R 357544 CDS YP_626926.1 108562610 4098073 complement(191344..192081) 1 NC_008086.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 192081 frdB 4098073 frdB Helicobacter pylori HPAG1 fumarate reductase iron-sulfur subunit YP_626926.1 191344 R 357544 CDS YP_626927.1 108562611 4098074 complement(192074..194218) 1 NC_008086.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 194218 4098074 HPAG1_0186 Helicobacter pylori HPAG1 fumarate reductase flavoprotein subunit YP_626927.1 192074 R 357544 CDS YP_626928.1 108562612 4099261 complement(194228..194995) 1 NC_008086.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 194995 4099261 HPAG1_0187 Helicobacter pylori HPAG1 fumarate reductase cytochrome b-556 subunit YP_626928.1 194228 R 357544 CDS YP_626929.1 108562613 4099262 195209..195913 1 NC_008086.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 195913 tpiA 4099262 tpiA Helicobacter pylori HPAG1 triosephosphate isomerase YP_626929.1 195209 D 357544 CDS YP_626930.1 108562614 4099263 195923..196756 1 NC_008086.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 196756 4099263 HPAG1_0189 Helicobacter pylori HPAG1 enoyl-(acyl carrier protein) reductase YP_626930.1 195923 D 357544 CDS YP_626931.1 108562615 4099264 196756..197766 1 NC_008086.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 197766 lpxD 4099264 lpxD Helicobacter pylori HPAG1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_626931.1 196756 D 357544 CDS YP_626932.1 108562616 4099265 197831..198988 1 NC_008086.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 198988 4099265 HPAG1_0191 Helicobacter pylori HPAG1 S-adenosylmethionine synthetase YP_626932.1 197831 D 357544 CDS YP_626933.1 108562617 4099266 199054..199467 1 NC_008086.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 199467 ndk 4099266 ndk Helicobacter pylori HPAG1 nucleoside diphosphate kinase YP_626933.1 199054 D 357544 CDS YP_626934.1 108562618 4099267 199492..199848 1 NC_008086.1 hypothetical protein 199848 4099267 HPAG1_0193 Helicobacter pylori HPAG1 hypothetical protein YP_626934.1 199492 D 357544 CDS YP_626935.1 108562619 4099268 199864..200010 1 NC_008086.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 200010 rpmF 4099268 rpmF Helicobacter pylori HPAG1 50S ribosomal protein L32 YP_626935.1 199864 D 357544 CDS YP_626936.1 108562620 4099269 200076..201098 1 NC_008086.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 201098 4099269 HPAG1_0195 Helicobacter pylori HPAG1 putative glycerol-3-phosphate acyltransferase PlsX YP_626936.1 200076 D 357544 CDS YP_626937.1 108562621 4099270 201123..202115 1 NC_008086.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 202115 4099270 HPAG1_0196 Helicobacter pylori HPAG1 3-oxoacyl-(acyl carrier protein) synthase III YP_626937.1 201123 D 357544 CDS YP_626938.1 108562622 4099271 202082..202438 1 NC_008086.1 hypothetical protein 202438 4099271 HPAG1_0197 Helicobacter pylori HPAG1 hypothetical protein YP_626938.1 202082 D 357544 CDS YP_626939.1 108562623 4099272 complement(203064..203447) 1 NC_008086.1 hypothetical protein 203447 4099272 HPAG1_0198 Helicobacter pylori HPAG1 hypothetical protein YP_626939.1 203064 R 357544 CDS YP_626940.1 108562624 4099273 complement(203524..205164) 1 NC_008086.1 hypothetical protein 205164 4099273 HPAG1_0199 Helicobacter pylori HPAG1 hypothetical protein YP_626940.1 203524 R 357544 CDS YP_626941.1 108562625 4099274 complement(205230..205787) 1 NC_008086.1 hypothetical protein 205787 4099274 HPAG1_0200 Helicobacter pylori HPAG1 hypothetical protein YP_626941.1 205230 R 357544 CDS YP_626942.1 108562626 4099275 complement(205999..207228) 1 NC_008086.1 putative transposase OrfB 207228 4099275 HPAG1_0201 Helicobacter pylori HPAG1 putative transposase OrfB YP_626942.1 205999 R 357544 CDS YP_626943.1 108562627 4099276 complement(207215..207847) 1 NC_008086.1 putative transposase OrfA 207847 4099276 HPAG1_0202 Helicobacter pylori HPAG1 putative transposase OrfA YP_626943.1 207215 R 357544 CDS YP_626944.1 108562628 4099277 complement(207844..208038) 1 NC_008086.1 hypothetical protein 208038 4099277 HPAG1_0203 Helicobacter pylori HPAG1 hypothetical protein YP_626944.1 207844 R 357544 CDS YP_626945.1 108562629 4099278 complement(208031..208249) 1 NC_008086.1 hypothetical protein 208249 4099278 HPAG1_0204 Helicobacter pylori HPAG1 hypothetical protein YP_626945.1 208031 R 357544 CDS YP_626946.1 108562630 4099279 complement(208297..208962) 1 NC_008086.1 hypothetical protein 208962 4099279 HPAG1_0205 Helicobacter pylori HPAG1 hypothetical protein YP_626946.1 208297 R 357544 CDS YP_626947.1 108562632 4098299 complement(208950..209054) 1 NC_008086.1 hypothetical protein 209054 4098299 HPAG1_0206 Helicobacter pylori HPAG1 hypothetical protein YP_626947.1 208950 R 357544 CDS YP_626948.1 108562631 4099280 209040..210281 1 NC_008086.1 ATP-binding protein 210281 4099280 HPAG1_0207 Helicobacter pylori HPAG1 ATP-binding protein YP_626948.1 209040 D 357544 CDS YP_626949.1 108562633 4098300 complement(210295..211431) 1 NC_008086.1 lipopolysaccharide 1,2-glycosyltransferase 211431 4098300 HPAG1_0208 Helicobacter pylori HPAG1 lipopolysaccharide 1,2-glycosyltransferase YP_626949.1 210295 R 357544 CDS YP_626950.1 108562634 4098301 complement(211362..211481) 1 NC_008086.1 lipopolysaccharide 1,2-glycosyltransferase 211481 4098301 HPAG1_0209 Helicobacter pylori HPAG1 lipopolysaccharide 1,2-glycosyltransferase YP_626950.1 211362 R 357544 CDS YP_626951.1 108562635 4098302 211636..212988 1 NC_008086.1 outer membrane protein HofA 212988 4098302 HPAG1_0210 Helicobacter pylori HPAG1 outer membrane protein HofA YP_626951.1 211636 D 357544 CDS YP_626952.1 108562636 4098303 213091..214956 1 NC_008086.1 molecular chaperone; heat shock protein 90 214956 4098303 HPAG1_0211 Helicobacter pylori HPAG1 heat shock protein 90 YP_626952.1 213091 D 357544 CDS YP_626953.1 108562637 4098304 complement(215289..216041) 1 NC_008086.1 cysteine-rich protein A 216041 4098304 HPAG1_0212 Helicobacter pylori HPAG1 cysteine-rich protein A YP_626953.1 215289 R 357544 CDS YP_626954.1 108562638 4098305 complement(216501..217652) 1 NC_008086.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 217652 4098305 HPAG1_0213 Helicobacter pylori HPAG1 succinyl-diaminopimelate desuccinylase YP_626954.1 216501 R 357544 CDS YP_626955.1 108562639 4098306 complement(217662..219527) 1 NC_008086.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 219527 4098306 HPAG1_0214 Helicobacter pylori HPAG1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_626955.1 217662 R 357544 CDS YP_626956.1 108562640 4098307 219623..221281 1 NC_008086.1 sodium-dependent transporter 221281 4098307 HPAG1_0215 Helicobacter pylori HPAG1 sodium-dependent transporter YP_626956.1 219623 D 357544 CDS YP_626957.1 108562641 4098308 221294..222094 1 NC_008086.1 CDP-diacylglycerol synthetase 222094 4098308 HPAG1_0216 Helicobacter pylori HPAG1 CDP-diacylglycerol synthetase YP_626957.1 221294 D 357544 CDS YP_626958.1 108562642 4098309 222095..223201 1 NC_008086.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 223201 4098309 HPAG1_0217 Helicobacter pylori HPAG1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_626958.1 222095 D 357544 CDS YP_626959.1 108562643 4098310 223252..223557 1 NC_008086.1 beta-1,4-N-acetylgalactosamyltransferase 223557 4098310 HPAG1_0218 Helicobacter pylori HPAG1 beta-1,4-N-acetylgalactosamyltransferase YP_626959.1 223252 D 357544 CDS YP_626960.1 108562644 4098311 223532..224392 1 NC_008086.1 hypothetical protein 224392 4098311 HPAG1_0219 Helicobacter pylori HPAG1 hypothetical protein YP_626960.1 223532 D 357544 CDS YP_626961.1 108562645 4098312 complement(224408..224959) 1 NC_008086.1 hypothetical protein 224959 4098312 HPAG1_0220 Helicobacter pylori HPAG1 hypothetical protein YP_626961.1 224408 R 357544 CDS YP_626962.1 108562646 4098313 225083..225565 1 NC_008086.1 hypothetical protein 225565 4098313 HPAG1_0221 Helicobacter pylori HPAG1 hypothetical protein YP_626962.1 225083 D 357544 CDS YP_626963.1 108562647 4098314 225733..226902 1 NC_008086.1 cysteine desulfurase 226902 4098314 HPAG1_0222 Helicobacter pylori HPAG1 cysteine desulfurase YP_626963.1 225733 D 357544 CDS YP_626964.1 108562648 4098315 226924..227904 1 NC_008086.1 nifU-like protein 227904 4098315 HPAG1_0223 Helicobacter pylori HPAG1 nifU-like protein YP_626964.1 226924 D 357544 CDS YP_626965.1 108562649 4098316 228065..228298 1 NC_008086.1 hypothetical protein 228298 4098316 HPAG1_0224 Helicobacter pylori HPAG1 hypothetical protein YP_626965.1 228065 D 357544 CDS YP_626966.1 108562650 4098317 228392..229762 1 NC_008086.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 229762 4098317 HPAG1_0225 Helicobacter pylori HPAG1 DNA repair protein RadA YP_626966.1 228392 D 357544 CDS YP_626967.1 108562651 4097959 229886..230965 1 NC_008086.1 bifunctional methionine sulfoxide reductase A/B protein 230965 4097959 HPAG1_0226 Helicobacter pylori HPAG1 bifunctional methionine sulfoxide reductase A/B protein YP_626967.1 229886 D 357544 CDS YP_626968.1 108562652 4097960 231156..231362 1 NC_008086.1 hypothetical protein 231362 4097960 HPAG1_0227 Helicobacter pylori HPAG1 hypothetical protein YP_626968.1 231156 D 357544 CDS YP_626969.1 108562653 4097961 complement(231339..232172) 1 NC_008086.1 hypothetical protein 232172 4097961 HPAG1_0228 Helicobacter pylori HPAG1 hypothetical protein YP_626969.1 231339 R 357544 CDS YP_626970.1 108562654 4097962 complement(232385..232450) 1 NC_008086.1 remnant of HopM 232450 4097962 HPAG1_0229 Helicobacter pylori HPAG1 remnant of HopM YP_626970.1 232385 R 357544 CDS YP_626971.1 108562655 4097963 complement(232492..234468) 1 NC_008086.1 outer membrane protein HopM 234468 4097963 HPAG1_0230 Helicobacter pylori HPAG1 outer membrane protein HopM YP_626971.1 232492 R 357544 CDS YP_626972.1 108562656 4097964 234724..235881 1 NC_008086.1 hypothetical protein 235881 4097964 HPAG1_0231 Helicobacter pylori HPAG1 hypothetical protein YP_626972.1 234724 D 357544 CDS YP_626973.1 108562657 4097966 complement(236130..237590) 1 NC_008086.1 outer membrane protein HopA 237590 4097966 HPAG1_0232 Helicobacter pylori HPAG1 outer membrane protein HopA YP_626973.1 236130 R 357544 CDS YP_626974.1 108562658 4097967 complement(237786..238517) 1 NC_008086.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 238517 4097967 HPAG1_0233 Helicobacter pylori HPAG1 3-deoxy-manno-octulosonate cytidylyltransferase YP_626974.1 237786 R 357544 CDS YP_626975.1 108562659 4097968 238630..239427 1 NC_008086.1 hypothetical protein 239427 4097968 HPAG1_0234 Helicobacter pylori HPAG1 hypothetical protein YP_626975.1 238630 D 357544 CDS YP_626976.1 108562660 4097969 239443..240093 1 NC_008086.1 hypothetical protein 240093 4097969 HPAG1_0235 Helicobacter pylori HPAG1 hypothetical protein YP_626976.1 239443 D 357544 CDS YP_626977.1 108562661 4097970 240115..241287 1 NC_008086.1 hypothetical protein 241287 4097970 HPAG1_0236 Helicobacter pylori HPAG1 hypothetical protein YP_626977.1 240115 D 357544 CDS YP_626978.1 108562662 4097971 241287..241817 1 NC_008086.1 hypothetical protein 241817 4097971 HPAG1_0237 Helicobacter pylori HPAG1 hypothetical protein YP_626978.1 241287 D 357544 CDS YP_626979.1 108562663 4097972 complement(242589..243656) 1 NC_008086.1 cysteine-rich protein E 243656 4097972 HPAG1_0238 Helicobacter pylori HPAG1 cysteine-rich protein E YP_626979.1 242589 R 357544 CDS YP_626980.1 108562664 4097973 complement(243750..244115) 1 NC_008086.1 hypothetical protein 244115 4097973 HPAG1_0239 Helicobacter pylori HPAG1 hypothetical protein YP_626980.1 243750 R 357544 CDS YP_626981.1 108562665 4097974 complement(244115..245035) 1 NC_008086.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 245035 hemC 4097974 hemC Helicobacter pylori HPAG1 porphobilinogen deaminase YP_626981.1 244115 R 357544 CDS YP_626982.1 108562666 4097975 complement(245046..246779) 1 NC_008086.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 246779 4097975 HPAG1_0241 Helicobacter pylori HPAG1 prolyl-tRNA synthetase YP_626982.1 245046 R 357544 CDS YP_626983.1 108562667 4097976 complement(246783..248132) 1 NC_008086.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 248132 hemA 4097976 hemA Helicobacter pylori HPAG1 glutamyl-tRNA reductase YP_626983.1 246783 R 357544 CDS YP_626984.1 108562668 4097977 complement(248132..249055) 1 NC_008086.1 putative octaprenyl-diphosphate synthase 249055 4097977 HPAG1_0243 Helicobacter pylori HPAG1 putative octaprenyl-diphosphate synthase YP_626984.1 248132 R 357544 CDS YP_626985.1 108562669 4098908 complement(249065..249466) 1 NC_008086.1 hypothetical protein 249466 4098908 HPAG1_0244 Helicobacter pylori HPAG1 hypothetical protein YP_626985.1 249065 R 357544 CDS YP_626986.1 108562670 4098909 complement(249453..249785) 1 NC_008086.1 hypothetical protein 249785 4098909 HPAG1_0245 Helicobacter pylori HPAG1 hypothetical protein YP_626986.1 249453 R 357544 CDS YP_626987.1 108562671 4098910 complement(249758..250195) 1 NC_008086.1 neutrophil activating protein 250195 4098910 HPAG1_0246 Helicobacter pylori HPAG1 neutrophil activating protein YP_626987.1 249758 R 357544 CDS YP_626988.1 108562672 4098911 complement(250398..251543) 1 NC_008086.1 histidine kinase sensor protein 251543 4098911 HPAG1_0247 Helicobacter pylori HPAG1 histidine kinase sensor protein YP_626988.1 250398 R 357544 CDS YP_626989.1 108562673 4098912 complement(251540..251857) 1 NC_008086.1 hypothetical protein 251857 4098912 HPAG1_0248 Helicobacter pylori HPAG1 hypothetical protein YP_626989.1 251540 R 357544 CDS YP_626990.1 108562674 4098913 complement(251854..252882) 1 NC_008086.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 252882 flgI 4098913 flgI Helicobacter pylori HPAG1 flagellar basal body P-ring protein YP_626990.1 251854 R 357544 CDS YP_626991.1 108562675 4098914 253067..254545 1 NC_008086.1 ATP-dependent RNA helicase 254545 4098914 HPAG1_0250 Helicobacter pylori HPAG1 ATP-dependent RNA helicase YP_626991.1 253067 D 357544 CDS YP_626992.1 108562676 4098915 254566..255654 1 NC_008086.1 hypothetical protein 255654 4098915 HPAG1_0251 Helicobacter pylori HPAG1 hypothetical protein YP_626992.1 254566 D 357544 CDS YP_626993.1 108562677 4098916 255661..256200 1 NC_008086.1 hypothetical protein 256200 4098916 HPAG1_0252 Helicobacter pylori HPAG1 hypothetical protein YP_626993.1 255661 D 357544 CDS YP_626994.1 108562678 4098917 complement(256252..257802) 1 NC_008086.1 oligopeptide permease ATPase protein 257802 4098917 HPAG1_0253 Helicobacter pylori HPAG1 oligopeptide permease ATPase protein YP_626994.1 256252 R 357544 CDS YP_626995.1 108562679 4098918 complement(257812..258834) 1 NC_008086.1 oligopeptide permease integral membrane protein 258834 4098918 HPAG1_0254 Helicobacter pylori HPAG1 oligopeptide permease integral membrane protein YP_626995.1 257812 R 357544 CDS YP_626996.1 108562680 4098920 259164..260621 1 NC_008086.1 outer membrane protein HopF 260621 4098920 HPAG1_0255 Helicobacter pylori HPAG1 outer membrane protein HopF YP_626996.1 259164 D 357544 CDS YP_626997.1 108562681 4098921 260631..262052 1 NC_008086.1 outer membrane protein HopG 262052 4098921 HPAG1_0256 Helicobacter pylori HPAG1 outer membrane protein HopG YP_626997.1 260631 D 357544 CDS YP_626998.1 108562682 4098922 262151..263386 1 NC_008086.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 263386 4098922 HPAG1_0257 Helicobacter pylori HPAG1 adenylosuccinate synthetase YP_626998.1 262151 D 357544 CDS YP_626999.1 108562683 4098923 263383..263811 1 NC_008086.1 hypothetical protein 263811 4098923 HPAG1_0258 Helicobacter pylori HPAG1 hypothetical protein YP_626999.1 263383 D 357544 CDS YP_627000.1 108562684 4098924 263804..264475 1 NC_008086.1 hypothetical protein 264475 4098924 HPAG1_0259 Helicobacter pylori HPAG1 hypothetical protein YP_627000.1 263804 D 357544 CDS YP_627001.1 108562685 4098925 264472..265527 1 NC_008086.1 hypothetical protein 265527 4098925 HPAG1_0260 Helicobacter pylori HPAG1 hypothetical protein YP_627001.1 264472 D 357544 CDS YP_627002.1 108562686 4099221 265540..266802 1 NC_008086.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 266802 xseA 4099221 xseA Helicobacter pylori HPAG1 exodeoxyribonuclease VII large subunit YP_627002.1 265540 D 357544 CDS YP_627003.1 108562687 4099222 complement(266821..267993) 1 NC_008086.1 type III adenine methyltransferase 267993 4099222 HPAG1_0262 Helicobacter pylori HPAG1 type III adenine methyltransferase YP_627003.1 266821 R 357544 CDS YP_627004.1 108562688 4099223 complement(267986..268444) 1 NC_008086.1 hypothetical protein 268444 4099223 HPAG1_0263 Helicobacter pylori HPAG1 hypothetical protein YP_627004.1 267986 R 357544 CDS YP_627005.1 108562689 4099224 268586..269185 1 NC_008086.1 hypothetical protein 269185 4099224 HPAG1_0264 Helicobacter pylori HPAG1 hypothetical protein YP_627005.1 268586 D 357544 CDS YP_627006.1 108562690 4099225 269297..270055 1 NC_008086.1 type II DNA modification enzyme 270055 4099225 HPAG1_0265 Helicobacter pylori HPAG1 type II DNA modification enzyme YP_627006.1 269297 D 357544 CDS YP_627007.1 108562691 4099226 270128..272698 1 NC_008086.1 ATP-dependent protease binding subunit/heat shock protein 272698 4099226 HPAG1_0266 Helicobacter pylori HPAG1 ATP-dependent protease binding subunit/heat shock protein YP_627007.1 270128 D 357544 CDS YP_627008.1 108562692 4099227 272753..273475 1 NC_008086.1 cytochrome c biogenesis protein 273475 4099227 HPAG1_0267 Helicobacter pylori HPAG1 cytochrome c biogenesis protein YP_627008.1 272753 D 357544 CDS YP_627009.1 108562693 4099228 273485..274621 1 NC_008086.1 dihydroorotase 274621 4099228 HPAG1_0268 Helicobacter pylori HPAG1 dihydroorotase YP_627009.1 273485 D 357544 CDS YP_627010.1 108562694 4099229 274606..275835 1 NC_008086.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 275835 4099229 HPAG1_0269 Helicobacter pylori HPAG1 chlorohydrolase YP_627010.1 274606 D 357544 CDS YP_627011.1 108562695 4099230 275896..276138 1 NC_008086.1 hypothetical protein 276138 4099230 HPAG1_0270 Helicobacter pylori HPAG1 hypothetical protein YP_627011.1 275896 D 357544 CDS YP_627012.1 108562696 4099231 276148..277461 1 NC_008086.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 277461 4099231 HPAG1_0271 Helicobacter pylori HPAG1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_627012.1 276148 D 357544 CDS YP_627013.1 108562697 4099232 277500..278153 1 NC_008086.1 hypothetical protein 278153 4099232 HPAG1_0272 Helicobacter pylori HPAG1 hypothetical protein YP_627013.1 277500 D 357544 CDS YP_627014.1 108562698 4099233 278146..279129 1 NC_008086.1 hypothetical protein 279129 4099233 HPAG1_0273 Helicobacter pylori HPAG1 hypothetical protein YP_627014.1 278146 D 357544 CDS YP_627015.1 108562699 4099234 279119..279652 1 NC_008086.1 hypothetical protein 279652 4099234 HPAG1_0274 Helicobacter pylori HPAG1 hypothetical protein YP_627015.1 279119 D 357544 CDS YP_627016.1 108562700 4099235 279649..280188 1 NC_008086.1 hypothetical protein 280188 4099235 HPAG1_0275 Helicobacter pylori HPAG1 hypothetical protein YP_627016.1 279649 D 357544 CDS YP_627017.1 108562701 4099236 280201..280602 1 NC_008086.1 hypothetical protein 280602 4099236 HPAG1_0276 Helicobacter pylori HPAG1 hypothetical protein YP_627017.1 280201 D 357544 CDS YP_627018.1 108562702 4099237 280639..281931 1 NC_008086.1 ATP-dependent nuclease 281931 4099237 HPAG1_0277 Helicobacter pylori HPAG1 ATP-dependent nuclease YP_627018.1 280639 D 357544 CDS YP_627019.1 108562703 4099238 281919..282464 1 NC_008086.1 hypothetical protein 282464 4099238 HPAG1_0278 Helicobacter pylori HPAG1 hypothetical protein YP_627019.1 281919 D 357544 CDS YP_627020.1 108562704 4099239 282535..282786 1 NC_008086.1 ferrodoxin 282786 4099239 HPAG1_0279 Helicobacter pylori HPAG1 ferrodoxin YP_627020.1 282535 D 357544 CDS YP_627021.1 108562705 4099240 282796..284250 1 NC_008086.1 guanosine pentaphosphate phosphohydrolase 284250 4099240 HPAG1_0280 Helicobacter pylori HPAG1 guanosine pentaphosphate phosphohydrolase YP_627021.1 282796 D 357544 CDS YP_627022.1 108562706 4098869 284247..285269 1 NC_008086.1 lipopolysaccharide heptosyltransferase-1 285269 4098869 HPAG1_0281 Helicobacter pylori HPAG1 lipopolysaccharide heptosyltransferase-1 YP_627022.1 284247 D 357544 CDS YP_627023.1 108562707 4098870 285266..286252 1 NC_008086.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 286252 4098870 HPAG1_0282 Helicobacter pylori HPAG1 lipid A biosynthesis lauroyl acyltransferase YP_627023.1 285266 D 357544 CDS YP_627024.1 108562708 4098871 complement(286351..287466) 1 NC_008086.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 287466 tgt 4098871 tgt Helicobacter pylori HPAG1 queuine tRNA-ribosyltransferase YP_627024.1 286351 R 357544 CDS YP_627025.1 108562709 4098872 287517..288959 1 NC_008086.1 hypothetical protein 288959 4098872 HPAG1_0284 Helicobacter pylori HPAG1 hypothetical protein YP_627025.1 287517 D 357544 CDS YP_627026.1 108562710 4098873 288964..289995 1 NC_008086.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 289995 aroB 4098873 aroB Helicobacter pylori HPAG1 3-dehydroquinate synthase YP_627026.1 288964 D 357544 CDS YP_627027.1 108562711 4098874 289986..291557 1 NC_008086.1 hypothetical protein 291557 4098874 HPAG1_0286 Helicobacter pylori HPAG1 hypothetical protein YP_627027.1 289986 D 357544 CDS YP_627028.1 108562712 4098875 291554..292810 1 NC_008086.1 hypothetical protein 292810 4098875 HPAG1_0287 Helicobacter pylori HPAG1 hypothetical protein YP_627028.1 291554 D 357544 CDS YP_627029.1 108562713 4098876 292797..294449 1 NC_008086.1 cell division protein 294449 4098876 HPAG1_0288 Helicobacter pylori HPAG1 cell division protein YP_627029.1 292797 D 357544 CDS YP_627030.1 108562714 4098877 294452..294970 1 NC_008086.1 hypothetical protein 294970 4098877 HPAG1_0289 Helicobacter pylori HPAG1 hypothetical protein YP_627030.1 294452 D 357544 CDS YP_627031.1 108562715 4098878 294983..295456 1 NC_008086.1 hypothetical protein 295456 4098878 HPAG1_0290 Helicobacter pylori HPAG1 hypothetical protein YP_627031.1 294983 D 357544 CDS YP_627032.1 108562716 4098879 295524..304220 1 NC_008086.1 putative vacuolating cytotoxin (VacA)-like protein 304220 4098879 HPAG1_0291 Helicobacter pylori HPAG1 putative vacuolating cytotoxin (VacA)-like protein YP_627032.1 295524 D 357544 CDS YP_627033.1 108562717 4098880 304268..305485 1 NC_008086.1 diaminopimelate decarboxylase 305485 4098880 HPAG1_0292 Helicobacter pylori HPAG1 diaminopimelate decarboxylase YP_627033.1 304268 D 357544 CDS YP_627034.1 108562718 4098881 305490..305780 1 NC_008086.1 hypothetical protein 305780 4098881 HPAG1_0293 Helicobacter pylori HPAG1 hypothetical protein YP_627034.1 305490 D 357544 CDS YP_627035.1 108562719 4098882 305793..306665 1 NC_008086.1 hypothetical protein 306665 4098882 HPAG1_0294 Helicobacter pylori HPAG1 hypothetical protein YP_627035.1 305793 D 357544 CDS YP_627036.1 108562720 4098883 306666..308345 1 NC_008086.1 para-aminobenzoate synthetase 308345 4098883 HPAG1_0295 Helicobacter pylori HPAG1 para-aminobenzoate synthetase YP_627036.1 306666 D 357544 CDS YP_627037.1 108562721 4098884 308534..309553 1 NC_008086.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 309553 amiE 4098884 amiE Helicobacter pylori HPAG1 acylamide amidohydrolase YP_627037.1 308534 D 357544 CDS YP_627038.1 108562722 4098885 complement(309635..312121) 1 NC_008086.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 312121 flgL 4098885 flgL Helicobacter pylori HPAG1 flagellar hook-associated protein FlgL YP_627038.1 309635 R 357544 CDS YP_627039.1 108562723 4098886 312354..312668 1 NC_008086.1 50S ribosomal protein L21 312668 rplU 4098886 rplU Helicobacter pylori HPAG1 50S ribosomal protein L21 YP_627039.1 312354 D 357544 CDS YP_627040.1 108562724 4098887 312683..312949 1 NC_008086.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 312949 rpmA 4098887 rpmA Helicobacter pylori HPAG1 50S ribosomal protein L27 YP_627040.1 312683 D 357544 CDS YP_627041.1 108562725 4098673 313066..314715 1 NC_008086.1 periplasmic dipeptide-binding protein 314715 4098673 HPAG1_0300 Helicobacter pylori HPAG1 periplasmic dipeptide-binding protein YP_627041.1 313066 D 357544 CDS YP_627042.1 108562726 4098674 314726..315730 1 NC_008086.1 dipeptide permease protein 315730 4098674 HPAG1_0301 Helicobacter pylori HPAG1 dipeptide permease protein YP_627042.1 314726 D 357544 CDS YP_627043.1 108562727 4098675 315730..316587 1 NC_008086.1 dipeptide permease protein 316587 4098675 HPAG1_0302 Helicobacter pylori HPAG1 dipeptide permease protein YP_627043.1 315730 D 357544 CDS YP_627044.1 108562728 4098676 316599..317462 1 NC_008086.1 dipeptide ABC transporter 317462 4098676 HPAG1_0303 Helicobacter pylori HPAG1 dipeptide ABC transporter YP_627044.1 316599 D 357544 CDS YP_627045.1 108562729 4098677 317459..318265 1 NC_008086.1 dipeptide ABC transporter 318265 4098677 HPAG1_0304 Helicobacter pylori HPAG1 dipeptide ABC transporter YP_627045.1 317459 D 357544 CDS YP_627046.1 108562730 4098678 318284..319366 1 NC_008086.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 319366 obgE 4098678 obgE Helicobacter pylori HPAG1 GTPase ObgE YP_627046.1 318284 D 357544 CDS YP_627047.1 108562731 4098679 319408..320403 1 NC_008086.1 hypothetical protein 320403 4098679 HPAG1_0306 Helicobacter pylori HPAG1 hypothetical protein YP_627047.1 319408 D 357544 CDS YP_627048.1 108562732 4098680 320649..321203 1 NC_008086.1 hypothetical protein 321203 4098680 HPAG1_0307 Helicobacter pylori HPAG1 hypothetical protein YP_627048.1 320649 D 357544 CDS YP_627049.1 108562733 4098681 321213..322505 1 NC_008086.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 322505 4098681 HPAG1_0308 Helicobacter pylori HPAG1 glutamate-1-semialdehyde aminotransferase YP_627049.1 321213 D 357544 CDS YP_627050.1 108562734 4098682 322510..322773 1 NC_008086.1 hypothetical protein 322773 4098682 HPAG1_0309 Helicobacter pylori HPAG1 hypothetical protein YP_627050.1 322510 D 357544 CDS YP_627051.1 108562735 4098683 322789..323193 1 NC_008086.1 hypothetical protein 323193 4098683 HPAG1_0310 Helicobacter pylori HPAG1 hypothetical protein YP_627051.1 322789 D 357544 CDS YP_627052.1 108562736 4098684 323277..324155 1 NC_008086.1 hypothetical protein 324155 4098684 HPAG1_0311 Helicobacter pylori HPAG1 hypothetical protein YP_627052.1 323277 D 357544 CDS YP_627053.1 108562737 4098685 324168..325049 1 NC_008086.1 hypothetical protein 325049 4098685 HPAG1_0312 Helicobacter pylori HPAG1 hypothetical protein YP_627053.1 324168 D 357544 CDS YP_627054.1 108562738 4098686 complement(325103..325795) 1 NC_008086.1 type II restriction enzyme 325795 4098686 HPAG1_0313 Helicobacter pylori HPAG1 type II restriction enzyme YP_627054.1 325103 R 357544 CDS YP_627055.1 108562739 4098687 complement(325806..326915) 1 NC_008086.1 DNA methylase 326915 4098687 HPAG1_0314 Helicobacter pylori HPAG1 DNA methylase YP_627055.1 325806 R 357544 CDS YP_627056.1 108562740 4098688 327010..327396 1 NC_008086.1 hypothetical protein 327396 4098688 HPAG1_0315 Helicobacter pylori HPAG1 hypothetical protein YP_627056.1 327010 D 357544 CDS YP_627057.1 108562741 4098689 327396..328361 1 NC_008086.1 ATP/GTP binding protein 328361 4098689 HPAG1_0316 Helicobacter pylori HPAG1 ATP/GTP binding protein YP_627057.1 327396 D 357544 CDS YP_627058.1 108562742 4098690 complement(328367..329512) 1 NC_008086.1 nitrite extrusion protein 329512 4098690 HPAG1_0317 Helicobacter pylori HPAG1 nitrite extrusion protein YP_627058.1 328367 R 357544 CDS YP_627059.1 108562743 4098691 complement(330274..330531) 1 NC_008086.1 hypothetical protein 330531 4098691 HPAG1_0318 Helicobacter pylori HPAG1 hypothetical protein YP_627059.1 330274 R 357544 CDS YP_627060.1 108562744 4098692 complement(330524..330652) 1 NC_008086.1 hypothetical protein 330652 4098692 HPAG1_0319 Helicobacter pylori HPAG1 hypothetical protein YP_627060.1 330524 R 357544 CDS YP_627061.1 108562745 4098519 complement(331459..333582) 1 NC_008086.1 outer membrane protein 333582 4098519 HPAG1_0320 Helicobacter pylori HPAG1 outer membrane protein YP_627061.1 331459 R 357544 CDS YP_627062.1 108562746 4098520 complement(333867..334622) 1 NC_008086.1 hypothetical protein 334622 4098520 HPAG1_0321 Helicobacter pylori HPAG1 hypothetical protein YP_627062.1 333867 R 357544 CDS YP_627063.1 108562747 4098521 complement(334685..336310) 1 NC_008086.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 336310 argS 4098521 argS Helicobacter pylori HPAG1 arginyl-tRNA synthetase YP_627063.1 334685 R 357544 CDS YP_627064.1 108562748 4098522 complement(336313..336552) 1 NC_008086.1 sec-independent protein translocase protein 336552 4098522 HPAG1_0323 Helicobacter pylori HPAG1 sec-independent protein translocase protein YP_627064.1 336313 R 357544 CDS YP_627065.1 108562749 4098523 complement(336623..337243) 1 NC_008086.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 337243 gmk 4098523 gmk Helicobacter pylori HPAG1 guanylate kinase YP_627065.1 336623 R 357544 CDS YP_627066.1 108562750 4098524 complement(337236..338660) 1 NC_008086.1 poly E-rich protein 338660 4098524 HPAG1_0325 Helicobacter pylori HPAG1 poly E-rich protein YP_627066.1 337236 R 357544 CDS YP_627067.1 108562751 4098525 338802..339344 1 NC_008086.1 membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation; nuclease NucT 339344 4098525 HPAG1_0326 Helicobacter pylori HPAG1 nuclease NucT YP_627067.1 338802 D 357544 CDS YP_627068.1 108562752 4098526 complement(339353..340117) 1 NC_008086.1 outer membrane protein HorC 340117 4098526 HPAG1_0327 Helicobacter pylori HPAG1 outer membrane protein HorC YP_627068.1 339353 R 357544 CDS YP_627069.1 108562753 4098527 340220..340933 1 NC_008086.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 340933 flgH 4098527 flgH Helicobacter pylori HPAG1 flagellar basal body L-ring protein YP_627069.1 340220 D 357544 CDS YP_627070.1 108562754 4098528 340952..341641 1 NC_008086.1 CMP-N-acetylneuraminic acid synthetase 341641 4098528 HPAG1_0329 Helicobacter pylori HPAG1 CMP-N-acetylneuraminic acid synthetase YP_627070.1 340952 D 357544 CDS YP_627071.1 108562755 4098529 341632..342507 1 NC_008086.1 CMP-N-acetylneuraminic acid synthetase 342507 4098529 HPAG1_0330 Helicobacter pylori HPAG1 CMP-N-acetylneuraminic acid synthetase YP_627071.1 341632 D 357544 CDS YP_627072.1 108562756 4098530 342504..343046 1 NC_008086.1 flagellar biosynthesis protein G 343046 4098530 HPAG1_0331 Helicobacter pylori HPAG1 flagellar biosynthesis protein G YP_627072.1 342504 D 357544 CDS YP_627073.1 108562757 4098531 complement(342979..343917) 1 NC_008086.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 343917 lpxK 4098531 lpxK Helicobacter pylori HPAG1 tetraacyldisaccharide 4'-kinase YP_627073.1 342979 R 357544 CDS YP_627074.1 108562758 4098532 complement(343914..344696) 1 NC_008086.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 344696 4098532 HPAG1_0333 Helicobacter pylori HPAG1 NAD synthetase YP_627074.1 343914 R 357544 CDS YP_627075.1 108562759 4098534 344945..345937 1 NC_008086.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 345937 4098534 HPAG1_0334 Helicobacter pylori HPAG1 ketol-acid reductoisomerase YP_627075.1 344945 D 357544 CDS YP_627076.1 108562760 4098535 345961..346767 1 NC_008086.1 cell division inhibitor 346767 4098535 HPAG1_0335 Helicobacter pylori HPAG1 cell division inhibitor YP_627076.1 345961 D 357544 CDS YP_627077.1 108562761 4098536 346764..346997 1 NC_008086.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 346997 minE 4098536 minE Helicobacter pylori HPAG1 cell division topological specificity factor MinE YP_627077.1 346764 D 357544 CDS YP_627078.1 108562762 4099346 347009..347809 1 NC_008086.1 DNA processing chain A 347809 4099346 HPAG1_0337 Helicobacter pylori HPAG1 DNA processing chain A YP_627078.1 347009 D 357544 CDS YP_627079.1 108562763 4099347 347806..348210 1 NC_008086.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 348210 4099347 HPAG1_0338 Helicobacter pylori HPAG1 Holliday junction resolvase-like protein YP_627079.1 347806 D 357544 CDS YP_627080.1 108562764 4099348 348318..348908 1 NC_008086.1 cysteine-rich protein H 348908 4099348 HPAG1_0339 Helicobacter pylori HPAG1 cysteine-rich protein H YP_627080.1 348318 D 357544 CDS YP_627081.1 108562765 4099349 349095..349433 1 NC_008086.1 hypothetical protein 349433 4099349 HPAG1_0340 Helicobacter pylori HPAG1 hypothetical protein YP_627081.1 349095 D 357544 CDS YP_627082.1 108562766 4099350 349417..349977 1 NC_008086.1 hypothetical protein 349977 4099350 HPAG1_0341 Helicobacter pylori HPAG1 hypothetical protein YP_627082.1 349417 D 357544 CDS YP_627083.1 108562767 4099351 complement(350080..350961) 1 NC_008086.1 hypothetical protein 350961 4099351 HPAG1_0342 Helicobacter pylori HPAG1 hypothetical protein YP_627083.1 350080 R 357544 CDS YP_627084.1 108562768 4099352 complement(350961..352511) 1 NC_008086.1 single-stranded-DNA specific exonuclease 352511 4099352 HPAG1_0343 Helicobacter pylori HPAG1 single-stranded-DNA specific exonuclease YP_627084.1 350961 R 357544 CDS YP_627085.1 108562769 4099353 complement(352521..354137) 1 NC_008086.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 354137 pyrG 4099353 pyrG Helicobacter pylori HPAG1 CTP synthetase YP_627085.1 352521 R 357544 CDS YP_627086.1 108562770 4099354 354395..355057 1 NC_008086.1 hypothetical protein 355057 4099354 HPAG1_0345 Helicobacter pylori HPAG1 hypothetical protein YP_627086.1 354395 D 357544 CDS YP_627087.1 108562771 4099355 355101..356804 1 NC_008086.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 356804 fliF 4099355 fliF Helicobacter pylori HPAG1 flagellar MS-ring protein YP_627087.1 355101 D 357544 CDS YP_627088.1 108562772 4099356 356822..357853 1 NC_008086.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 357853 fliG 4099356 fliG Helicobacter pylori HPAG1 flagellar motor switch protein G YP_627088.1 356822 D 357544 CDS YP_627089.1 108562773 4099357 357840..358616 1 NC_008086.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 358616 fliH 4099357 fliH Helicobacter pylori HPAG1 flagellar assembly protein H YP_627089.1 357840 D 357544 CDS YP_627090.1 108562774 4099358 358613..360469 1 NC_008086.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 360469 4099358 HPAG1_0349 Helicobacter pylori HPAG1 1-deoxy-D-xylulose-5-phosphate synthase YP_627090.1 358613 D 357544 CDS YP_627091.1 108562775 4099359 360466..362274 1 NC_008086.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 362274 4099359 HPAG1_0350 Helicobacter pylori HPAG1 GTP-binding protein LepA YP_627091.1 360466 D 357544 CDS YP_627092.1 108562776 4099360 362289..362978 1 NC_008086.1 hypothetical protein 362978 4099360 HPAG1_0351 Helicobacter pylori HPAG1 hypothetical protein YP_627092.1 362289 D 357544 CDS YP_627093.1 108562777 4099361 362989..363285 1 NC_008086.1 hypothetical protein 363285 4099361 HPAG1_0352 Helicobacter pylori HPAG1 hypothetical protein YP_627093.1 362989 D 357544 CDS YP_627094.1 108562778 4099362 complement(363326..363400) 1 NC_008086.1 hypothetical protein 363400 4099362 HPAG1_0353 Helicobacter pylori HPAG1 hypothetical protein YP_627094.1 363326 R 357544 CDS YP_627095.1 108562779 4099363 363538..363750 1 NC_008086.1 hypothetical protein 363750 4099363 HPAG1_0354 Helicobacter pylori HPAG1 hypothetical protein YP_627095.1 363538 D 357544 CDS YP_627096.1 108562780 4099364 complement(363968..364777) 1 NC_008086.1 flagellar basal-body rod protein 364777 4099364 HPAG1_0355 Helicobacter pylori HPAG1 flagellar basal-body rod protein YP_627096.1 363968 R 357544 CDS YP_627097.1 108562781 4099365 complement(364832..366112) 1 NC_008086.1 alpha-ketoglutarate permease 366112 4099365 HPAG1_0356 Helicobacter pylori HPAG1 alpha-ketoglutarate permease YP_627097.1 364832 R 357544 CDS YP_627098.1 108562782 4099041 complement(366295..368907) 1 NC_008086.1 cell division protein 368907 4099041 HPAG1_0357 Helicobacter pylori HPAG1 cell division protein YP_627098.1 366295 R 357544 CDS YP_627099.1 108562783 4099042 complement(368877..371210) 1 NC_008086.1 hypothetical protein 371210 4099042 HPAG1_0358 Helicobacter pylori HPAG1 hypothetical protein YP_627099.1 368877 R 357544 CDS YP_627100.1 108562784 4099043 complement(371207..373135) 1 NC_008086.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 373135 4099043 HPAG1_0359 Helicobacter pylori HPAG1 transketolase YP_627100.1 371207 R 357544 CDS YP_627101.1 108562785 4099044 complement(373179..374021) 1 NC_008086.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 374021 4099044 HPAG1_0360 Helicobacter pylori HPAG1 bifunctional riboflavin kinase/FMN adenylyltransferase YP_627101.1 373179 R 357544 CDS YP_627102.1 108562786 4099045 complement(373987..374694) 1 NC_008086.1 hemolysin 374694 4099045 HPAG1_0361 Helicobacter pylori HPAG1 hemolysin YP_627102.1 373987 R 357544 CDS YP_627103.1 108562787 4099046 complement(374694..375209) 1 NC_008086.1 hypothetical protein 375209 4099046 HPAG1_0362 Helicobacter pylori HPAG1 hypothetical protein YP_627103.1 374694 R 357544 CDS YP_627104.1 108562788 4099047 375276..376199 1 NC_008086.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 376199 pyrB 4099047 pyrB Helicobacter pylori HPAG1 aspartate carbamoyltransferase catalytic subunit YP_627104.1 375276 D 357544 CDS YP_627105.1 108562789 4099048 376496..377935 1 NC_008086.1 outer membrane protein HofB 377935 4099048 HPAG1_0364 Helicobacter pylori HPAG1 outer membrane protein HofB YP_627105.1 376496 D 357544 CDS YP_627106.1 108562790 4099049 378026..379681 1 NC_008086.1 multidrug resistance protein 379681 4099049 HPAG1_0365 Helicobacter pylori HPAG1 multidrug resistance protein YP_627106.1 378026 D 357544 CDS YP_627107.1 108562791 4099050 379675..380298 1 NC_008086.1 hypothetical protein 380298 4099050 HPAG1_0366 Helicobacter pylori HPAG1 hypothetical protein YP_627107.1 379675 D 357544 CDS YP_627108.1 108562792 4099051 380302..380871 1 NC_008086.1 hypothetical protein 380871 4099051 HPAG1_0367 Helicobacter pylori HPAG1 hypothetical protein YP_627108.1 380302 D 357544 CDS YP_627109.1 108562793 4099052 381004..382116 1 NC_008086.1 hypothetical protein 382116 4099052 HPAG1_0368 Helicobacter pylori HPAG1 hypothetical protein YP_627109.1 381004 D 357544 CDS YP_627110.1 108562794 4099053 382139..382822 1 NC_008086.1 hypothetical protein 382822 4099053 HPAG1_0369 Helicobacter pylori HPAG1 hypothetical protein YP_627110.1 382139 D 357544 CDS YP_627111.1 108562795 4099054 382880..383875 1 NC_008086.1 high affinity nickel transport protein 383875 4099054 HPAG1_0370 Helicobacter pylori HPAG1 high affinity nickel transport protein YP_627111.1 382880 D 357544 CDS YP_627112.1 108562796 4099055 complement(383879..384400) 1 NC_008086.1 hypothetical protein 384400 4099055 HPAG1_0371 Helicobacter pylori HPAG1 hypothetical protein YP_627112.1 383879 R 357544 CDS YP_627113.1 108562797 4099056 384536..385852 1 NC_008086.1 hypothetical protein 385852 4099056 HPAG1_0372 Helicobacter pylori HPAG1 hypothetical protein YP_627113.1 384536 D 357544 CDS YP_627114.1 108562798 4099057 complement(386024..386404) 1 NC_008086.1 hypothetical protein 386404 4099057 HPAG1_0373 Helicobacter pylori HPAG1 hypothetical protein YP_627114.1 386024 R 357544 CDS YP_627115.1 108562799 4099058 complement(386503..386703) 1 NC_008086.1 copper ion binding protein 386703 4099058 HPAG1_0374 Helicobacter pylori HPAG1 copper ion binding protein YP_627115.1 386503 R 357544 CDS YP_627116.1 108562800 4099059 complement(386704..388941) 1 NC_008086.1 copper-transporting ATPase 388941 4099059 HPAG1_0375 Helicobacter pylori HPAG1 copper-transporting ATPase YP_627116.1 386704 R 357544 CDS YP_627117.1 108562801 4098926 complement(388938..389651) 1 NC_008086.1 phosphatidylserine synthase 389651 4098926 HPAG1_0376 Helicobacter pylori HPAG1 phosphatidylserine synthase YP_627117.1 388938 R 357544 CDS YP_627118.1 108562802 4098927 complement(389641..389895) 1 NC_008086.1 hypothetical protein 389895 4098927 HPAG1_0377 Helicobacter pylori HPAG1 hypothetical protein YP_627118.1 389641 R 357544 CDS YP_627119.1 108562803 4098928 complement(389898..391796) 1 NC_008086.1 cell division protein 391796 4098928 HPAG1_0378 Helicobacter pylori HPAG1 cell division protein YP_627119.1 389898 R 357544 CDS YP_627120.1 108562804 4098929 complement(391805..392794) 1 NC_008086.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 392794 prmA 4098929 prmA Helicobacter pylori HPAG1 ribosomal protein L11 methyltransferase YP_627120.1 391805 R 357544 CDS YP_627121.1 108562805 4098930 complement(392795..393169) 1 NC_008086.1 chemotaxis protein 393169 4098930 HPAG1_0380 Helicobacter pylori HPAG1 chemotaxis protein YP_627121.1 392795 R 357544 CDS YP_627122.1 108562806 4098931 393464..394066 1 NC_008086.1 outer membrane protein HorD 394066 4098931 HPAG1_0381 Helicobacter pylori HPAG1 outer membrane protein HorD YP_627122.1 393464 D 357544 CDS YP_627123.1 108562807 4098933 complement(394198..394605) 1 NC_008086.1 hypothetical protein 394605 4098933 HPAG1_0382 Helicobacter pylori HPAG1 hypothetical protein YP_627123.1 394198 R 357544 CDS YP_627124.1 108562808 4098934 complement(394608..394838) 1 NC_008086.1 hypothetical protein 394838 4098934 HPAG1_0383 Helicobacter pylori HPAG1 hypothetical protein YP_627124.1 394608 R 357544 CDS YP_627125.1 108562809 4098935 complement(394832..395368) 1 NC_008086.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 395368 gidB 4098935 gidB Helicobacter pylori HPAG1 16S rRNA methyltransferase GidB YP_627125.1 394832 R 357544 CDS YP_627126.1 108562810 4098936 complement(395365..396402) 1 NC_008086.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 396402 queA 4098936 queA Helicobacter pylori HPAG1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_627126.1 395365 R 357544 CDS YP_627127.1 108562811 4098937 complement(396403..397125) 1 NC_008086.1 hypothetical protein 397125 4098937 HPAG1_0386 Helicobacter pylori HPAG1 hypothetical protein YP_627127.1 396403 R 357544 CDS YP_627128.1 108562812 4098938 complement(397118..397600) 1 NC_008086.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 397600 4098938 HPAG1_0387 Helicobacter pylori HPAG1 sec-independent translocase YP_627128.1 397118 R 357544 CDS YP_627129.1 108562813 4098939 complement(397668..398678) 1 NC_008086.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 398678 ruvB 4098939 ruvB Helicobacter pylori HPAG1 Holliday junction DNA helicase RuvB YP_627129.1 397668 R 357544 CDS YP_627130.1 108562814 4098940 complement(398679..399491) 1 NC_008086.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 399491 panB 4098940 panB Helicobacter pylori HPAG1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_627130.1 398679 R 357544 CDS YP_627131.1 108562815 4098941 399640..400362 1 NC_008086.1 hypothetical protein 400362 4098941 HPAG1_0390 Helicobacter pylori HPAG1 hypothetical protein YP_627131.1 399640 D 357544 CDS YP_627132.1 108562816 4098942 400340..401209 1 NC_008086.1 hypothetical protein 401209 4098942 HPAG1_0391 Helicobacter pylori HPAG1 hypothetical protein YP_627132.1 400340 D 357544 CDS YP_627133.1 108562817 4098943 401239..402162 1 NC_008086.1 hypothetical protein 402162 4098943 HPAG1_0392 Helicobacter pylori HPAG1 hypothetical protein YP_627133.1 401239 D 357544 CDS YP_627134.1 108562818 4098944 402172..403494 1 NC_008086.1 hypothetical protein 403494 4098944 HPAG1_0393 Helicobacter pylori HPAG1 hypothetical protein YP_627134.1 402172 D 357544 CDS YP_627135.1 108562819 4098771 403431..404084 1 NC_008086.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 404084 minC 4098771 minC Helicobacter pylori HPAG1 septum formation inhibitor YP_627135.1 403431 D 357544 CDS YP_627136.1 108562820 4098772 404081..404968 1 NC_008086.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 404968 lpxC 4098772 lpxC Helicobacter pylori HPAG1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_627136.1 404081 D 357544 CDS YP_627137.1 108562821 4098773 404990..405463 1 NC_008086.1 hypothetical protein 405463 4098773 HPAG1_0396 Helicobacter pylori HPAG1 hypothetical protein YP_627137.1 404990 D 357544 CDS YP_627138.1 108562822 4098774 405517..406398 1 NC_008086.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 406398 4098774 HPAG1_0397 Helicobacter pylori HPAG1 homoserine kinase YP_627138.1 405517 D 357544 CDS YP_627139.1 108562823 4098775 406370..406639 1 NC_008086.1 hypothetical protein 406639 4098775 HPAG1_0398 Helicobacter pylori HPAG1 hypothetical protein YP_627139.1 406370 D 357544 CDS YP_627140.1 108562824 4098776 406636..409470 1 NC_008086.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 409470 infB 4098776 infB Helicobacter pylori HPAG1 translation initiation factor IF-2 YP_627140.1 406636 D 357544 CDS YP_627141.1 108562825 4098777 409470..409805 1 NC_008086.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 409805 rbfA 4098777 rbfA Helicobacter pylori HPAG1 ribosome-binding factor A YP_627141.1 409470 D 357544 CDS YP_627142.1 108562826 4098778 409798..410238 1 NC_008086.1 hypothetical protein 410238 4098778 HPAG1_0401 Helicobacter pylori HPAG1 hypothetical protein YP_627142.1 409798 D 357544 CDS YP_627143.1 108562827 4098779 complement(410346..412334) 1 NC_008086.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 412334 4098779 HPAG1_0402 Helicobacter pylori HPAG1 acetyl-CoA synthetase YP_627143.1 410346 R 357544 CDS YP_627144.1 108562828 4098780 412537..413649 1 NC_008086.1 hypothetical protein 413649 4098780 HPAG1_0403 Helicobacter pylori HPAG1 hypothetical protein YP_627144.1 412537 D 357544 CDS YP_627145.1 108562829 4098781 413988..414659 1 NC_008086.1 putative transcriptional regulator 414659 4098781 HPAG1_0404 Helicobacter pylori HPAG1 putative transcriptional regulator YP_627145.1 413988 D 357544 CDS YP_627146.1 108562830 4098782 complement(415172..416218) 1 NC_008086.1 hypothetical protein 416218 4098782 HPAG1_0405 Helicobacter pylori HPAG1 hypothetical protein YP_627146.1 415172 R 357544 CDS YP_627147.1 108562831 4098783 complement(416246..418447) 1 NC_008086.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 418447 flhA 4098783 flhA Helicobacter pylori HPAG1 flagellar biosynthesis protein FlhA YP_627147.1 416246 R 357544 CDS YP_627148.1 108562832 4098784 418585..418857 1 NC_008086.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 418857 rpsO 4098784 rpsO Helicobacter pylori HPAG1 30S ribosomal protein S15 YP_627148.1 418585 D 357544 CDS YP_627149.1 108562833 4098785 418888..420177 1 NC_008086.1 hypothetical protein 420177 4098785 HPAG1_0408 Helicobacter pylori HPAG1 hypothetical protein YP_627149.1 418888 D 357544 CDS YP_627150.1 108562834 4098786 420308..420811 1 NC_008086.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 420811 4098786 HPAG1_0409 Helicobacter pylori HPAG1 3-dehydroquinate dehydratase YP_627150.1 420308 D 357544 CDS YP_627151.1 108562835 4098787 420825..421898 1 NC_008086.1 proline peptidase 421898 4098787 HPAG1_0410 Helicobacter pylori HPAG1 proline peptidase YP_627151.1 420825 D 357544 CDS YP_627152.1 108562836 4098788 421895..422386 1 NC_008086.1 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 422386 4098788 HPAG1_0411 Helicobacter pylori HPAG1 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_627152.1 421895 D 357544 CDS YP_627153.1 108562837 4098789 422380..423759 1 NC_008086.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 423759 flhF 4098789 flhF Helicobacter pylori HPAG1 flagellar biosynthesis regulator FlhF YP_627153.1 422380 D 357544 CDS YP_627154.1 108562838 4098790 423756..424640 1 NC_008086.1 ATP-binding protein 424640 4098790 HPAG1_0413 Helicobacter pylori HPAG1 ATP-binding protein YP_627154.1 423756 D 357544 CDS YP_627155.1 108562839 4098791 complement(424653..424928) 1 NC_008086.1 hypothetical protein 424928 4098791 HPAG1_0414 Helicobacter pylori HPAG1 hypothetical protein YP_627155.1 424653 R 357544 CDS YP_627156.1 108562840 4098792 424937..425704 1 NC_008086.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 425704 fliA 4098792 fliA Helicobacter pylori HPAG1 flagellar biosynthesis sigma factor YP_627156.1 424937 D 357544 CDS YP_627157.1 108562841 4098793 425697..426761 1 NC_008086.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 426761 fliM 4098793 fliM Helicobacter pylori HPAG1 flagellar motor switch protein FliM YP_627157.1 425697 D 357544 CDS YP_627158.1 108562842 4098794 426765..427628 1 NC_008086.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 427628 4098794 HPAG1_0417 Helicobacter pylori HPAG1 flagellar motor switch protein FliY YP_627158.1 426765 D 357544 CDS YP_627159.1 108562843 4098795 427657..428193 1 NC_008086.1 hypothetical protein 428193 4098795 HPAG1_0418 Helicobacter pylori HPAG1 hypothetical protein YP_627159.1 427657 D 357544 CDS YP_627160.1 108562844 4098796 428190..428687 1 NC_008086.1 hypothetical protein 428687 4098796 HPAG1_0419 Helicobacter pylori HPAG1 hypothetical protein YP_627160.1 428190 D 357544 CDS YP_627161.1 108562845 4098797 complement(428707..429159) 1 NC_008086.1 ferric uptake regulation protein 429159 4098797 HPAG1_0420 Helicobacter pylori HPAG1 ferric uptake regulation protein YP_627161.1 428707 R 357544 CDS YP_627162.1 108562846 4098798 complement(429319..430494) 1 NC_008086.1 recombination factor protein RarA 430494 4098798 HPAG1_0421 Helicobacter pylori HPAG1 recombination factor protein RarA YP_627162.1 429319 R 357544 CDS YP_627163.1 108562847 4098799 complement(430491..430862) 1 NC_008086.1 putative heat shock protein 430862 4098799 HPAG1_0422 Helicobacter pylori HPAG1 putative heat shock protein YP_627163.1 430491 R 357544 CDS YP_627164.1 108562848 4098800 complement(430872..431738) 1 NC_008086.1 co-chaperone-curved DNA binding protein A 431738 4098800 HPAG1_0423 Helicobacter pylori HPAG1 co-chaperone-curved DNA binding protein A YP_627164.1 430872 R 357544 CDS YP_627165.1 108562849 4098801 431906..433156 1 NC_008086.1 hypothetical protein 433156 4098801 HPAG1_0424 Helicobacter pylori HPAG1 hypothetical protein YP_627165.1 431906 D 357544 CDS YP_627166.1 108562850 4098802 complement(433164..434000) 1 NC_008086.1 hypothetical protein 434000 4098802 HPAG1_0425 Helicobacter pylori HPAG1 hypothetical protein YP_627166.1 433164 R 357544 CDS YP_627167.1 108562851 4098803 complement(434256..435152) 1 NC_008086.1 response regulator 435152 4098803 HPAG1_0426 Helicobacter pylori HPAG1 response regulator YP_627167.1 434256 R 357544 CDS YP_627168.1 108562852 4098804 complement(435174..436394) 1 NC_008086.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 436394 ispDF 4098804 ispDF Helicobacter pylori HPAG1 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_627168.1 435174 R 357544 CDS YP_627169.1 108562853 4098805 complement(436416..437846) 1 NC_008086.1 protease DO 437846 4098805 HPAG1_0428 Helicobacter pylori HPAG1 protease DO YP_627169.1 436416 R 357544 CDS YP_627170.1 108562854 4098806 complement(437890..439332) 1 NC_008086.1 amino acid permease 439332 4098806 HPAG1_0429 Helicobacter pylori HPAG1 amino acid permease YP_627170.1 437890 R 357544 CDS YP_627171.1 108562855 4098807 complement(439546..440148) 1 NC_008086.1 phosphatidylglycerophosphate synthase 440148 4098807 HPAG1_0430 Helicobacter pylori HPAG1 phosphatidylglycerophosphate synthase YP_627171.1 439546 R 357544 CDS YP_627172.1 108562856 4098808 complement(440082..440690) 1 NC_008086.1 hypothetical protein 440690 4098808 HPAG1_0431 Helicobacter pylori HPAG1 hypothetical protein YP_627172.1 440082 R 357544 CDS YP_627173.1 108562857 4098809 complement(440700..441488) 1 NC_008086.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 441488 4098809 HPAG1_0432 Helicobacter pylori HPAG1 7-alpha-hydroxysteroid dehydrogenase YP_627173.1 440700 R 357544 CDS YP_627174.1 108562858 4099321 complement(441485..442387) 1 NC_008086.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 442387 4099321 HPAG1_0433 Helicobacter pylori HPAG1 dihydrodipicolinate synthase YP_627174.1 441485 R 357544 CDS YP_627175.1 108562859 4099322 complement(442402..443736) 1 NC_008086.1 putative zinc protease 443736 4099322 HPAG1_0434 Helicobacter pylori HPAG1 putative zinc protease YP_627175.1 442402 R 357544 CDS YP_627176.1 108562860 4099323 complement(443733..444788) 1 NC_008086.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 444788 4099323 HPAG1_0435 Helicobacter pylori HPAG1 dihydroorotate dehydrogenase 2 YP_627176.1 443733 R 357544 CDS YP_627177.1 108562861 4099324 complement(444826..446853) 1 NC_008086.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 446853 4099324 HPAG1_0436 Helicobacter pylori HPAG1 polyphosphate kinase YP_627177.1 444826 R 357544 CDS YP_627178.1 108562862 4099326 complement(447285..448544) 1 NC_008086.1 type I restriction enzyme S protein 448544 4099326 HPAG1_0437 Helicobacter pylori HPAG1 type I restriction enzyme S protein YP_627178.1 447285 R 357544 CDS YP_627179.1 108562863 4099327 complement(448537..450168) 1 NC_008086.1 type I restriction enzyme M protein 450168 4099327 HPAG1_0438 Helicobacter pylori HPAG1 type I restriction enzyme M protein YP_627179.1 448537 R 357544 CDS YP_627180.1 108562864 4099328 complement(450161..452467) 1 NC_008086.1 type I restriction enzyme R protein 452467 4099328 HPAG1_0439 Helicobacter pylori HPAG1 type I restriction enzyme R protein YP_627180.1 450161 R 357544 CDS YP_627181.1 108562865 4099329 complement(452561..453292) 1 NC_008086.1 type I restriction enzyme R protein 453292 4099329 HPAG1_0440 Helicobacter pylori HPAG1 type I restriction enzyme R protein YP_627181.1 452561 R 357544 CDS YP_627182.1 108562866 4099330 complement(453340..455235) 1 NC_008086.1 hypothetical protein 455235 4099330 HPAG1_0441 Helicobacter pylori HPAG1 hypothetical protein YP_627182.1 453340 R 357544 CDS YP_627183.1 108562867 4099331 complement(455261..456028) 1 NC_008086.1 hypothetical protein 456028 4099331 HPAG1_0442 Helicobacter pylori HPAG1 hypothetical protein YP_627183.1 455261 R 357544 CDS YP_627184.1 108562868 4099332 complement(456038..456388) 1 NC_008086.1 hypothetical protein 456388 4099332 HPAG1_0443 Helicobacter pylori HPAG1 hypothetical protein YP_627184.1 456038 R 357544 CDS YP_627185.1 108562869 4099333 complement(456354..457841) 1 NC_008086.1 hypothetical protein 457841 4099333 HPAG1_0444 Helicobacter pylori HPAG1 hypothetical protein YP_627185.1 456354 R 357544 CDS YP_627186.1 108562870 4099334 complement(457853..458341) 1 NC_008086.1 hypothetical protein 458341 4099334 HPAG1_0445 Helicobacter pylori HPAG1 hypothetical protein YP_627186.1 457853 R 357544 CDS YP_627187.1 108562871 4099335 complement(458326..460062) 1 NC_008086.1 oligoendopeptidase F 460062 4099335 HPAG1_0446 Helicobacter pylori HPAG1 oligoendopeptidase F YP_627187.1 458326 R 357544 CDS YP_627188.1 108562872 4099336 complement(460159..461409) 1 NC_008086.1 glutathione-regulated potassium-efflux system protein 461409 4099336 HPAG1_0447 Helicobacter pylori HPAG1 glutathione-regulated potassium-efflux system protein YP_627188.1 460159 R 357544 CDS YP_627189.1 108562873 4099337 complement(461563..461754) 1 NC_008086.1 hypothetical protein 461754 4099337 HPAG1_0448 Helicobacter pylori HPAG1 hypothetical protein YP_627189.1 461563 R 357544 CDS YP_627190.1 108562874 4099338 complement(461729..462289) 1 NC_008086.1 outer membrane protein HorE 462289 4099338 HPAG1_0449 Helicobacter pylori HPAG1 outer membrane protein HorE YP_627190.1 461729 R 357544 CDS YP_627191.1 108562875 4099366 462512..463252 1 NC_008086.1 molybdenum ABC transporter ModA 463252 4099366 HPAG1_0450 Helicobacter pylori HPAG1 molybdenum ABC transporter ModA YP_627191.1 462512 D 357544 CDS YP_627192.1 108562876 4099367 463274..463948 1 NC_008086.1 molybdenum ABC transporter ModB 463948 4099367 HPAG1_0451 Helicobacter pylori HPAG1 molybdenum ABC transporter ModB YP_627192.1 463274 D 357544 CDS YP_627193.1 108562877 4099368 463945..464742 1 NC_008086.1 molybdenum ABC transporter ModD 464742 4099368 HPAG1_0452 Helicobacter pylori HPAG1 molybdenum ABC transporter ModD YP_627193.1 463945 D 357544 CDS YP_627194.1 108562878 4099369 complement(464858..466249) 1 NC_008086.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 466249 gltX 4099369 gltX Helicobacter pylori HPAG1 glutamyl-tRNA synthetase YP_627194.1 464858 R 357544 CDS YP_627195.1 108562879 4099370 466367..467473 1 NC_008086.1 outer membrane protein HopJ 467473 4099370 HPAG1_0454 Helicobacter pylori HPAG1 outer membrane protein HopJ YP_627195.1 466367 D 357544 CDS YP_627196.1 108562880 4099371 467482..469119 1 NC_008086.1 type II adenine specific methyltransferase 469119 4099371 HPAG1_0455 Helicobacter pylori HPAG1 type II adenine specific methyltransferase YP_627196.1 467482 D 357544 CDS YP_627197.1 108562881 4099372 469085..469927 1 NC_008086.1 hypothetical protein 469927 4099372 HPAG1_0456 Helicobacter pylori HPAG1 hypothetical protein YP_627197.1 469085 D 357544 CDS YP_627198.1 108562882 4099373 469973..471772 1 NC_008086.1 GTP-binding protein 471772 4099373 HPAG1_0457 Helicobacter pylori HPAG1 GTP-binding protein YP_627198.1 469973 D 357544 CDS YP_627199.1 108562883 4099374 471788..472717 1 NC_008086.1 type II adenine specific DNA methyltransferase 472717 4099374 HPAG1_0458 Helicobacter pylori HPAG1 type II adenine specific DNA methyltransferase YP_627199.1 471788 D 357544 CDS YP_627200.1 108562884 4099375 472719..473303 1 NC_008086.1 hypothetical protein 473303 4099375 HPAG1_0459 Helicobacter pylori HPAG1 hypothetical protein YP_627200.1 472719 D 357544 CDS YP_627201.1 108562885 4099376 473435..473917 1 NC_008086.1 type II DNA modification enzyme 473917 4099376 HPAG1_0460 Helicobacter pylori HPAG1 type II DNA modification enzyme YP_627201.1 473435 D 357544 CDS YP_627202.1 108562886 4099377 complement(473986..474930) 1 NC_008086.1 catalase like protein 474930 4099377 HPAG1_0461 Helicobacter pylori HPAG1 catalase like protein YP_627202.1 473986 R 357544 CDS YP_627203.1 108562887 4099378 475216..476802 1 NC_008086.1 outer membrane protein HofC 476802 4099378 HPAG1_0462 Helicobacter pylori HPAG1 outer membrane protein HofC YP_627203.1 475216 D 357544 CDS YP_627204.1 108562888 4099379 476860..478272 1 NC_008086.1 outer membrane protein HofD 478272 4099379 HPAG1_0463 Helicobacter pylori HPAG1 outer membrane protein HofD YP_627204.1 476860 D 357544 CDS YP_627205.1 108562889 4099380 478414..481407 1 NC_008086.1 hypothetical protein 481407 4099380 HPAG1_0464 Helicobacter pylori HPAG1 hypothetical protein YP_627205.1 478414 D 357544 CDS YP_627206.1 108562890 4099381 481409..482335 1 NC_008086.1 hypothetical protein 482335 4099381 HPAG1_0465 Helicobacter pylori HPAG1 hypothetical protein YP_627206.1 481409 D 357544 CDS YP_627207.1 108562891 4099382 complement(482709..483845) 1 NC_008086.1 putative potassium channel protein 483845 4099382 HPAG1_0466 Helicobacter pylori HPAG1 putative potassium channel protein YP_627207.1 482709 R 357544 CDS YP_627208.1 108562892 4099383 complement(483995..484183) 1 NC_008086.1 required for 70S ribosome assembly; 50S ribosomal protein L28 484183 rpmB 4099383 rpmB Helicobacter pylori HPAG1 50S ribosomal protein L28 YP_627208.1 483995 R 357544 CDS YP_627209.1 108562893 4099384 complement(484283..485119) 1 NC_008086.1 neuraminyllactose-binding hemagglutinin 485119 4099384 HPAG1_0468 Helicobacter pylori HPAG1 neuraminyllactose-binding hemagglutinin YP_627209.1 484283 R 357544 CDS YP_627210.1 108562894 4099385 485246..486307 1 NC_008086.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 486307 mraY 4099385 mraY Helicobacter pylori HPAG1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_627210.1 485246 D 357544 CDS YP_627211.1 108562895 4098595 486309..487577 1 NC_008086.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 487577 murD 4098595 murD Helicobacter pylori HPAG1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_627211.1 486309 D 357544 CDS YP_627212.1 108562896 4098596 complement(487574..487834) 1 NC_008086.1 hypothetical protein 487834 4098596 HPAG1_0471 Helicobacter pylori HPAG1 hypothetical protein YP_627212.1 487574 R 357544 CDS YP_627213.1 108562897 4098597 complement(487824..488225) 1 NC_008086.1 hypothetical protein 488225 4098597 HPAG1_0472 Helicobacter pylori HPAG1 hypothetical protein YP_627213.1 487824 R 357544 CDS YP_627214.1 108562898 4098598 488456..489784 1 NC_008086.1 sodium- and chloride-dependent transporter 489784 4098598 HPAG1_0473 Helicobacter pylori HPAG1 sodium- and chloride-dependent transporter YP_627214.1 488456 D 357544 CDS YP_627215.1 108562899 4098599 489795..491123 1 NC_008086.1 sodium- and chloride-dependent transporter 491123 4098599 HPAG1_0474 Helicobacter pylori HPAG1 sodium- and chloride-dependent transporter YP_627215.1 489795 D 357544 CDS YP_627216.1 108562900 4098600 491138..492205 1 NC_008086.1 phospholipase A1 492205 4098600 HPAG1_0475 Helicobacter pylori HPAG1 phospholipase A1 YP_627216.1 491138 D 357544 CDS YP_627217.1 108562901 4098601 492262..493386 1 NC_008086.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 493386 4098601 HPAG1_0476 Helicobacter pylori HPAG1 DNA polymerase III subunit beta YP_627217.1 492262 D 357544 CDS YP_627218.1 108562902 4098602 493399..495720 1 NC_008086.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 495720 gyrB 4098602 gyrB Helicobacter pylori HPAG1 DNA gyrase subunit B YP_627218.1 493399 D 357544 CDS YP_627219.1 108562903 4098603 495766..496758 1 NC_008086.1 hypothetical protein 496758 4098603 HPAG1_0478 Helicobacter pylori HPAG1 hypothetical protein YP_627219.1 495766 D 357544 CDS YP_627220.1 108562904 4098604 496745..497500 1 NC_008086.1 hypothetical protein 497500 4098604 HPAG1_0479 Helicobacter pylori HPAG1 hypothetical protein YP_627220.1 496745 D 357544 CDS YP_627221.1 108562905 4098605 497716..498927 1 NC_008086.1 putative outer membrane protein 498927 4098605 HPAG1_0480 Helicobacter pylori HPAG1 putative outer membrane protein YP_627221.1 497716 D 357544 CDS YP_627222.1 108562906 4098606 498927..499553 1 NC_008086.1 hypothetical protein 499553 4098606 HPAG1_0481 Helicobacter pylori HPAG1 hypothetical protein YP_627222.1 498927 D 357544 CDS YP_627223.1 108562907 4098607 499594..500913 1 NC_008086.1 hypothetical protein 500913 4098607 HPAG1_0482 Helicobacter pylori HPAG1 hypothetical protein YP_627223.1 499594 D 357544 CDS YP_627224.1 108562908 4098608 500915..502294 1 NC_008086.1 glycolate oxidase subunit 502294 4098608 HPAG1_0483 Helicobacter pylori HPAG1 glycolate oxidase subunit YP_627224.1 500915 D 357544 CDS YP_627225.1 108562909 4098609 502317..503081 1 NC_008086.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 503081 4098609 HPAG1_0484 Helicobacter pylori HPAG1 dihydrodipicolinate reductase YP_627225.1 502317 D 357544 CDS YP_627226.1 108562910 4098610 503415..503531 1 NC_008086.1 urease-enhancing factor 503531 4098610 HPAG1_0485 Helicobacter pylori HPAG1 urease-enhancing factor YP_627226.1 503415 D 357544 CDS YP_627227.1 108562911 4098611 complement(503801..505246) 1 NC_008086.1 glutamine synthetase 505246 4098611 HPAG1_0486 Helicobacter pylori HPAG1 glutamine synthetase YP_627227.1 503801 R 357544 CDS YP_627228.1 108562912 4098612 505385..507481 1 NC_008086.1 hypothetical protein 507481 4098612 HPAG1_0487 Helicobacter pylori HPAG1 hypothetical protein YP_627228.1 505385 D 357544 CDS YP_627229.1 108562913 4098613 507547..507996 1 NC_008086.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 507996 rplI 4098613 rplI Helicobacter pylori HPAG1 50S ribosomal protein L9 YP_627229.1 507547 D 357544 CDS YP_627230.1 108562914 4097923 508000..508542 1 NC_008086.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 508542 4097923 HPAG1_0489 Helicobacter pylori HPAG1 ATP-dependent protease peptidase subunit YP_627230.1 508000 D 357544 CDS YP_627231.1 108562915 4097924 508542..509873 1 NC_008086.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 509873 hslU 4097924 hslU Helicobacter pylori HPAG1 ATP-dependent protease ATP-binding subunit HslU YP_627231.1 508542 D 357544 CDS YP_627232.1 108562916 4097925 509873..510778 1 NC_008086.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 510778 era 4097925 era Helicobacter pylori HPAG1 GTP-binding protein Era YP_627232.1 509873 D 357544 CDS YP_627233.1 108562917 4097926 510775..511767 1 NC_008086.1 hypothetical protein 511767 4097926 HPAG1_0492 Helicobacter pylori HPAG1 hypothetical protein YP_627233.1 510775 D 357544 CDS YP_627234.1 108562918 4097927 complement(511846..512700) 1 NC_008086.1 hypothetical protein 512700 4097927 HPAG1_0493 Helicobacter pylori HPAG1 hypothetical protein YP_627234.1 511846 R 357544 CDS YP_627235.1 108562919 4097928 512719..512958 1 NC_008086.1 IS606 transposase 512958 4097928 HPAG1_0494 Helicobacter pylori HPAG1 IS606 transposase YP_627235.1 512719 D 357544 CDS YP_627236.1 108562920 4097929 513044..513391 1 NC_008086.1 cag pathogenicity island protein 1 513391 4097929 HPAG1_0495 Helicobacter pylori HPAG1 cag pathogenicity island protein 1 YP_627236.1 513044 D 357544 CDS YP_627237.1 108562921 4097930 513407..514165 1 NC_008086.1 HP0521B-like protein 514165 4097930 HPAG1_0496 Helicobacter pylori HPAG1 HP0521B-like protein YP_627237.1 513407 D 357544 CDS YP_627238.1 108562922 4097931 514158..515603 1 NC_008086.1 cag pathogenicity island protein 3 515603 4097931 HPAG1_0497 Helicobacter pylori HPAG1 cag pathogenicity island protein 3 YP_627238.1 514158 D 357544 CDS YP_627239.1 108562923 4097932 515613..516122 1 NC_008086.1 cag pathogenicity island protein 4 516122 4097932 HPAG1_0498 Helicobacter pylori HPAG1 cag pathogenicity island protein 4 YP_627239.1 515613 D 357544 CDS YP_627240.1 108562924 4097933 complement(516241..518487) 1 NC_008086.1 cag pathogenicity island protein 5 518487 4097933 HPAG1_0499 Helicobacter pylori HPAG1 cag pathogenicity island protein 5 YP_627240.1 516241 R 357544 CDS YP_627241.1 108562925 4097934 complement(518496..519488) 1 NC_008086.1 cag pathogenicity island encoded protein/ATPase protein 519488 4097934 HPAG1_0500 Helicobacter pylori HPAG1 cag pathogenicity island encoded protein/ATPase protein YP_627241.1 518496 R 357544 CDS YP_627242.1 108562926 4097935 complement(519493..520092) 1 NC_008086.1 cag pathogenicity island protein Z 520092 4097935 HPAG1_0501 Helicobacter pylori HPAG1 cag pathogenicity island protein Z YP_627242.1 519493 R 357544 CDS YP_627243.1 108562927 4097936 complement(520227..524114) 1 NC_008086.1 cag pathogenicity island protein Y 524114 4097936 HPAG1_0502 Helicobacter pylori HPAG1 cag pathogenicity island protein Y YP_627243.1 520227 R 357544 CDS YP_627244.1 108562928 4097937 complement(524173..526161) 1 NC_008086.1 cag pathogenicity island protein Y 526161 4097937 HPAG1_0503 Helicobacter pylori HPAG1 cag pathogenicity island protein Y YP_627244.1 524173 R 357544 CDS YP_627245.1 108562929 4097938 complement(526176..527747) 1 NC_008086.1 cag pathogenicity island protein X 527747 4097938 HPAG1_0504 Helicobacter pylori HPAG1 cag pathogenicity island protein X YP_627245.1 526176 R 357544 CDS YP_627246.1 108562930 4097939 complement(527797..529404) 1 NC_008086.1 cag pathogenicity island protein W 529404 4097939 HPAG1_0505 Helicobacter pylori HPAG1 cag pathogenicity island protein W YP_627246.1 527797 R 357544 CDS YP_627247.1 108562931 4097940 complement(529409..530167) 1 NC_008086.1 cag pathogenicity island protein V 530167 4097940 HPAG1_0506 Helicobacter pylori HPAG1 cag pathogenicity island protein V YP_627247.1 529409 R 357544 CDS YP_627248.1 108562932 4097941 530565..531215 1 NC_008086.1 cag pathogenicity island protein U 531215 4097941 HPAG1_0507 Helicobacter pylori HPAG1 cag pathogenicity island protein U YP_627248.1 530565 D 357544 CDS YP_627249.1 108562933 4097942 531228..532070 1 NC_008086.1 cag pathogenicity island protein T 532070 4097942 HPAG1_0508 Helicobacter pylori HPAG1 cag pathogenicity island protein T YP_627249.1 531228 D 357544 CDS YP_627251.1 108562935 4098946 complement(532270..532869) 1 NC_008086.1 cag pathogenicity island protein S 532869 4098946 HPAG1_0510 Helicobacter pylori HPAG1 cag pathogenicity island protein S YP_627251.1 532270 R 357544 CDS YP_627252.1 108562936 4098947 complement(533301..533681) 1 NC_008086.1 cag pathogenicity island protein Q 533681 4098947 HPAG1_0511 Helicobacter pylori HPAG1 cag pathogenicity island protein Q YP_627252.1 533301 R 357544 CDS YP_627253.1 108562937 4098948 534882..536012 1 NC_008086.1 cag pathogenicity island protein M 536012 4098948 HPAG1_0512 Helicobacter pylori HPAG1 cag pathogenicity island protein M YP_627253.1 534882 D 357544 CDS YP_627254.1 108562938 4098949 536027..536947 1 NC_008086.1 cag pathogenicity island protein N 536947 4098949 HPAG1_0513 Helicobacter pylori HPAG1 cag pathogenicity island protein N YP_627254.1 536027 D 357544 CDS YP_627255.1 108562939 4098950 complement(537029..537742) 1 NC_008086.1 cag pathogenicity island protein L 537742 4098950 HPAG1_0514 Helicobacter pylori HPAG1 cag pathogenicity island protein L YP_627255.1 537029 R 357544 CDS YP_627256.1 108562940 4098951 complement(537739..538884) 1 NC_008086.1 cag pathogenicity island protein I 538884 4098951 HPAG1_0515 Helicobacter pylori HPAG1 cag pathogenicity island protein I YP_627256.1 537739 R 357544 CDS YP_627257.1 108562941 4098952 complement(538895..540007) 1 NC_008086.1 cag pathogenicity island protein H 540007 4098952 HPAG1_0516 Helicobacter pylori HPAG1 cag pathogenicity island protein H YP_627257.1 538895 R 357544 CDS YP_627258.1 108562942 4098953 complement(540024..540452) 1 NC_008086.1 cag pathogenicity island protein G 540452 4098953 HPAG1_0517 Helicobacter pylori HPAG1 cag pathogenicity island protein G YP_627258.1 540024 R 357544 CDS YP_627259.1 108562943 4098954 complement(540507..541313) 1 NC_008086.1 cag pathogenicity island protein F 541313 4098954 HPAG1_0518 Helicobacter pylori HPAG1 cag pathogenicity island protein F YP_627259.1 540507 R 357544 CDS YP_627260.1 108562944 4098955 complement(541315..542631) 1 NC_008086.1 cag pathogenicity island protein E 542631 4098955 HPAG1_0519 Helicobacter pylori HPAG1 cag pathogenicity island protein E YP_627260.1 541315 R 357544 CDS YP_627261.1 108562945 4098956 complement(542661..544265) 1 NC_008086.1 cag pathogenicity island protein E 544265 4098956 HPAG1_0520 Helicobacter pylori HPAG1 cag pathogenicity island protein E YP_627261.1 542661 R 357544 CDS YP_627262.1 108562946 4098957 complement(544274..544924) 1 NC_008086.1 cag pathogenicity island protein D 544924 4098957 HPAG1_0521 Helicobacter pylori HPAG1 cag pathogenicity island protein D YP_627262.1 544274 R 357544 CDS YP_627263.1 108562947 4098958 complement(544899..545246) 1 NC_008086.1 cag pathogenicity island protein C 545246 4098958 HPAG1_0522 Helicobacter pylori HPAG1 cag pathogenicity island protein C YP_627263.1 544899 R 357544 CDS YP_627264.1 108562948 4098959 complement(545391..545618) 1 NC_008086.1 cag pathogenicity island protein B 545618 4098959 HPAG1_0523 Helicobacter pylori HPAG1 cag pathogenicity island protein B YP_627264.1 545391 R 357544 CDS YP_627265.1 108562949 4098960 546049..549651 1 NC_008086.1 cytotoxin-associated protein A 549651 4098960 HPAG1_0524 Helicobacter pylori HPAG1 cytotoxin-associated protein A YP_627265.1 546049 D 357544 CDS YP_627266.1 108562950 4098961 complement(549714..549863) 1 NC_008086.1 transposase B-like protein 549863 4098961 HPAG1_0525 Helicobacter pylori HPAG1 transposase B-like protein YP_627266.1 549714 R 357544 CDS YP_627267.1 108562951 4098962 complement(549878..550033) 1 NC_008086.1 transposase B-like protein 550033 4098962 HPAG1_0526 Helicobacter pylori HPAG1 transposase B-like protein YP_627267.1 549878 R 357544 CDS YP_627268.1 108562952 4098963 complement(550135..550902) 1 NC_008086.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 550902 4098963 HPAG1_0527 Helicobacter pylori HPAG1 glutamate racemase YP_627268.1 550135 R 357544 CDS YP_627269.1 108562953 4098145 complement(550939..552255) 1 NC_008086.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 552255 rho 4098145 rho Helicobacter pylori HPAG1 transcription termination factor Rho YP_627269.1 550939 R 357544 CDS YP_627270.1 108562954 4098146 552519..552722 1 NC_008086.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 552722 rpmE 4098146 rpmE Helicobacter pylori HPAG1 50S ribosomal protein L31 YP_627270.1 552519 D 357544 CDS YP_627271.1 108562955 4098147 552747..553610 1 NC_008086.1 hypothetical protein 553610 4098147 HPAG1_0530 Helicobacter pylori HPAG1 hypothetical protein YP_627271.1 552747 D 357544 CDS YP_627272.1 108562956 4098148 553623..554306 1 NC_008086.1 hypothetical protein 554306 4098148 HPAG1_0531 Helicobacter pylori HPAG1 hypothetical protein YP_627272.1 553623 D 357544 CDS YP_627273.1 108562957 4098149 554319..555284 1 NC_008086.1 hypothetical protein 555284 4098149 HPAG1_0532 Helicobacter pylori HPAG1 hypothetical protein YP_627273.1 554319 D 357544 CDS YP_627274.1 108562958 4098150 555281..556102 1 NC_008086.1 hypothetical protein 556102 4098150 HPAG1_0533 Helicobacter pylori HPAG1 hypothetical protein YP_627274.1 555281 D 357544 CDS YP_627275.1 108562959 4098151 complement(556166..556603) 1 NC_008086.1 hypothetical protein 556603 4098151 HPAG1_0534 Helicobacter pylori HPAG1 hypothetical protein YP_627275.1 556166 R 357544 CDS YP_627276.1 108562960 4098152 complement(557048..557986) 1 NC_008086.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 557986 4098152 HPAG1_0535 Helicobacter pylori HPAG1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_627276.1 557048 R 357544 CDS YP_627277.1 108562961 4098153 complement(558008..559246) 1 NC_008086.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 559246 4098153 HPAG1_0536 Helicobacter pylori HPAG1 3-oxoacyl-(acyl carrier protein) synthase II YP_627277.1 558008 R 357544 CDS YP_627278.1 108562962 4098154 complement(559262..559369) 1 NC_008086.1 hypothetical protein 559369 4098154 HPAG1_0537 Helicobacter pylori HPAG1 hypothetical protein YP_627278.1 559262 R 357544 CDS YP_627279.1 108562963 4098155 complement(559558..559794) 1 NC_008086.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 559794 acpP 4098155 acpP Helicobacter pylori HPAG1 acyl carrier protein YP_627279.1 559558 R 357544 CDS YP_627281.1 108562965 4098157 complement(560025..560768) 1 NC_008086.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 560768 fabG 4098157 fabG Helicobacter pylori HPAG1 3-ketoacyl-(acyl-carrier-protein) reductase YP_627281.1 560025 R 357544 CDS YP_627282.1 108562966 4098158 complement(560810..561022) 1 NC_008086.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 561022 rpsU 4098158 rpsU Helicobacter pylori HPAG1 30S ribosomal protein S21 YP_627282.1 560810 R 357544 CDS YP_627283.1 108562967 4098159 complement(561122..562372) 1 NC_008086.1 hypothetical protein 562372 4098159 HPAG1_0542 Helicobacter pylori HPAG1 hypothetical protein YP_627283.1 561122 R 357544 CDS YP_627284.1 108562968 4098160 562544..562786 1 NC_008086.1 hypothetical protein 562786 4098160 HPAG1_0543 Helicobacter pylori HPAG1 hypothetical protein YP_627284.1 562544 D 357544 CDS YP_627285.1 108562969 4098161 complement(562810..563457) 1 NC_008086.1 hypothetical protein 563457 4098161 HPAG1_0544 Helicobacter pylori HPAG1 hypothetical protein YP_627285.1 562810 R 357544 CDS YP_627286.1 108562970 4098162 complement(563564..564385) 1 NC_008086.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 564385 dapF 4098162 dapF Helicobacter pylori HPAG1 diaminopimelate epimerase YP_627286.1 563564 R 357544 CDS YP_627287.1 108562971 4098163 564500..565549 1 NC_008086.1 membrane protein 565549 4098163 HPAG1_0546 Helicobacter pylori HPAG1 membrane protein YP_627287.1 564500 D 357544 CDS YP_627288.1 108562972 4098164 complement(565907..566674) 1 NC_008086.1 hypothetical protein 566674 4098164 HPAG1_0547 Helicobacter pylori HPAG1 hypothetical protein YP_627288.1 565907 R 357544 CDS YP_627289.1 108562973 4099404 complement(566818..567918) 1 NC_008086.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 567918 4099404 HPAG1_0548 Helicobacter pylori HPAG1 GTP-dependent nucleic acid-binding protein EngD YP_627289.1 566818 R 357544 CDS YP_627290.1 108562974 4099405 complement(567920..569410) 1 NC_008086.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 569410 4099405 HPAG1_0549 Helicobacter pylori HPAG1 leucyl aminopeptidase YP_627290.1 567920 R 357544 CDS YP_627291.1 108562975 4099406 complement(569458..570036) 1 NC_008086.1 hypothetical protein 570036 4099406 HPAG1_0550 Helicobacter pylori HPAG1 hypothetical protein YP_627291.1 569458 R 357544 CDS YP_627292.1 108562976 4099407 complement(570051..570590) 1 NC_008086.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 570590 4099407 HPAG1_0551 Helicobacter pylori HPAG1 adenine phosphoribosyltransferase YP_627292.1 570051 R 357544 CDS YP_627293.1 108562977 4099408 complement(570648..570980) 1 NC_008086.1 hypothetical protein 570980 4099408 HPAG1_0552 Helicobacter pylori HPAG1 hypothetical protein YP_627293.1 570648 R 357544 CDS YP_627294.1 108562978 4099409 complement(571025..571486) 1 NC_008086.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 571486 4099409 HPAG1_0553 Helicobacter pylori HPAG1 ribose-5-phosphate isomerase B YP_627294.1 571025 R 357544 CDS YP_627295.1 108562979 4099410 complement(571507..572205) 1 NC_008086.1 hypothetical protein 572205 4099410 HPAG1_0554 Helicobacter pylori HPAG1 hypothetical protein YP_627295.1 571507 R 357544 CDS YP_627296.1 108562980 4099411 complement(572214..573086) 1 NC_008086.1 signal peptidase I 573086 4099411 HPAG1_0555 Helicobacter pylori HPAG1 signal peptidase I YP_627296.1 572214 R 357544 CDS YP_627297.1 108562981 4099412 complement(573086..573964) 1 NC_008086.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 573964 4099412 HPAG1_0556 Helicobacter pylori HPAG1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_627297.1 573086 R 357544 CDS YP_627298.1 108562982 4099413 complement(574038..576068) 1 NC_008086.1 hypothetical protein 576068 4099413 HPAG1_0557 Helicobacter pylori HPAG1 hypothetical protein YP_627298.1 574038 R 357544 CDS YP_627299.1 108562983 4099414 complement(576074..576631) 1 NC_008086.1 hypothetical protein 576631 4099414 HPAG1_0558 Helicobacter pylori HPAG1 hypothetical protein YP_627299.1 576074 R 357544 CDS YP_627300.1 108562984 4099415 complement(576635..577753) 1 NC_008086.1 hypothetical protein 577753 4099415 HPAG1_0559 Helicobacter pylori HPAG1 hypothetical protein YP_627300.1 576635 R 357544 CDS YP_627301.1 108562985 4099416 complement(577729..578748) 1 NC_008086.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 578748 4099416 HPAG1_0560 Helicobacter pylori HPAG1 dihydroorotase YP_627301.1 577729 R 357544 CDS YP_627302.1 108562986 4099417 complement(578752..579717) 1 NC_008086.1 putative siderophore-mediated iron transport protein 579717 4099417 HPAG1_0561 Helicobacter pylori HPAG1 putative siderophore-mediated iron transport protein YP_627302.1 578752 R 357544 CDS YP_627303.1 108562987 4099418 complement(579701..580582) 1 NC_008086.1 hypothetical protein 580582 4099418 HPAG1_0562 Helicobacter pylori HPAG1 hypothetical protein YP_627303.1 579701 R 357544 CDS YP_627304.1 108562988 4099419 complement(580579..580950) 1 NC_008086.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 580950 4099419 HPAG1_0563 Helicobacter pylori HPAG1 flagellar motor switch protein YP_627304.1 580579 R 357544 CDS YP_627305.1 108562989 4099420 complement(581032..581595) 1 NC_008086.1 endonuclease III 581595 4099420 HPAG1_0564 Helicobacter pylori HPAG1 endonuclease III YP_627305.1 581032 R 357544 CDS YP_627306.1 108562990 4099421 complement(581678..581914) 1 NC_008086.1 hypothetical protein 581914 4099421 HPAG1_0565 Helicobacter pylori HPAG1 hypothetical protein YP_627306.1 581678 R 357544 CDS YP_627307.1 108562992 4098353 complement(581916..584849) 1 NC_008086.1 hypothetical protein 584849 4098353 HPAG1_0567 Helicobacter pylori HPAG1 hypothetical protein YP_627307.1 581916 R 357544 CDS YP_627308.1 108562991 4099422 584767..585756 1 NC_008086.1 aminodeoxychorismate lyase 585756 4099422 HPAG1_0566 Helicobacter pylori HPAG1 aminodeoxychorismate lyase YP_627308.1 584767 D 357544 CDS YP_627309.1 108562993 4098354 585941..586282 1 NC_008086.1 2-oxoglutarate-acceptor oxidoreductase subunit OorD 586282 oorD 4098354 oorD Helicobacter pylori HPAG1 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_627309.1 585941 D 357544 CDS YP_627310.1 108562994 4098355 586282..587409 1 NC_008086.1 2-oxoglutarate-acceptor oxidoreductase subunit OorA 587409 oorA 4098355 oorA Helicobacter pylori HPAG1 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_627310.1 586282 D 357544 CDS YP_627311.1 108562995 4098356 587411..588232 1 NC_008086.1 2-oxoglutarate-acceptor oxidoreductase subunit OorB 588232 oorB 4098356 oorB Helicobacter pylori HPAG1 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_627311.1 587411 D 357544 CDS YP_627312.1 108562996 4098357 588232..588786 1 NC_008086.1 2-oxoglutarate-acceptor oxidoreductase subunit OorC 588786 oorC 4098357 oorC Helicobacter pylori HPAG1 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_627312.1 588232 D 357544 CDS YP_627313.1 108562997 4098358 588896..589579 1 NC_008086.1 hypothetical protein 589579 4098358 HPAG1_0572 Helicobacter pylori HPAG1 hypothetical protein YP_627313.1 588896 D 357544 CDS YP_627314.1 108562998 4098359 589645..590673 1 NC_008086.1 hypothetical protein 590673 4098359 HPAG1_0573 Helicobacter pylori HPAG1 hypothetical protein YP_627314.1 589645 D 357544 CDS YP_627315.1 108562999 4098360 590818..590982 1 NC_008086.1 hypothetical protein 590982 4098360 HPAG1_0574 Helicobacter pylori HPAG1 hypothetical protein YP_627315.1 590818 D 357544 CDS YP_627316.1 108563000 4098361 590991..592463 1 NC_008086.1 hypothetical protein 592463 4098361 HPAG1_0575 Helicobacter pylori HPAG1 hypothetical protein YP_627316.1 590991 D 357544 CDS YP_627317.1 108563001 4098362 592938..593516 1 NC_008086.1 Tip-alpha; forms a dimer; found in culture supernatant; induces TNF-alpha and NF-kappa-B in cell cultures of mouse cells; tumor necrosis factor alpha-inducing protein 593516 4098362 HPAG1_0576 Helicobacter pylori HPAG1 tumor necrosis factor alpha-inducing protein YP_627317.1 592938 D 357544 CDS YP_627318.1 108563002 4098363 complement(593519..595498) 1 NC_008086.1 penicillin-binding protein 1A 595498 4098363 HPAG1_0577 Helicobacter pylori HPAG1 penicillin-binding protein 1A YP_627318.1 593519 R 357544 CDS YP_627319.1 108563003 4098364 complement(595498..596619) 1 NC_008086.1 8-amino-7-oxononanoate synthase 596619 4098364 HPAG1_0578 Helicobacter pylori HPAG1 8-amino-7-oxononanoate synthase YP_627319.1 595498 R 357544 CDS YP_627320.1 108563004 4098365 complement(596642..597943) 1 NC_008086.1 hemolysin secretion protein 597943 4098365 HPAG1_0579 Helicobacter pylori HPAG1 hemolysin secretion protein YP_627320.1 596642 R 357544 CDS YP_627321.1 108563005 4098366 complement(598015..598929) 1 NC_008086.1 multidrug resistance protein 598929 4098366 HPAG1_0580 Helicobacter pylori HPAG1 multidrug resistance protein YP_627321.1 598015 R 357544 CDS YP_627322.1 108563006 4098367 complement(598895..599791) 1 NC_008086.1 multidrug resistance protein 599791 4098367 HPAG1_0581 Helicobacter pylori HPAG1 multidrug resistance protein YP_627322.1 598895 R 357544 CDS YP_627323.1 108563007 4098368 599960..601492 1 NC_008086.1 FlaA; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin A 601492 4098368 HPAG1_0582 Helicobacter pylori HPAG1 flagellin A YP_627323.1 599960 D 357544 CDS YP_627324.1 108563008 4098369 601610..602266 1 NC_008086.1 3-methyladenine DNA glycosylase 602266 4098369 HPAG1_0583 Helicobacter pylori HPAG1 3-methyladenine DNA glycosylase YP_627324.1 601610 D 357544 CDS YP_627325.1 108563009 4098370 602263..602880 1 NC_008086.1 hypothetical protein 602880 4098370 HPAG1_0584 Helicobacter pylori HPAG1 hypothetical protein YP_627325.1 602263 D 357544 CDS YP_627326.1 108563010 4098371 602946..603968 1 NC_008086.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 603968 hemE 4098371 hemE Helicobacter pylori HPAG1 uroporphyrinogen decarboxylase YP_627326.1 602946 D 357544 CDS YP_627327.1 108563011 4098372 603978..605411 1 NC_008086.1 hypothetical protein 605411 4098372 HPAG1_0586 Helicobacter pylori HPAG1 hypothetical protein YP_627327.1 603978 D 357544 CDS YP_627328.1 108563012 4099202 605422..606126 1 NC_008086.1 membrane fusion protein of the hefABC efflux system HefB 606126 4099202 HPAG1_0587 Helicobacter pylori HPAG1 membrane fusion protein of the hefABC efflux system HefB YP_627328.1 605422 D 357544 CDS YP_627329.1 108563013 4099203 606139..609225 1 NC_008086.1 cytoplasmic pump protein of the hefABC efflux system HefC 609225 4099203 HPAG1_0588 Helicobacter pylori HPAG1 cytoplasmic pump protein of the hefABC efflux system HefC YP_627329.1 606139 D 357544 CDS YP_627330.1 108563014 4099204 609222..609791 1 NC_008086.1 hypothetical protein 609791 4099204 HPAG1_0589 Helicobacter pylori HPAG1 hypothetical protein YP_627330.1 609222 D 357544 CDS YP_627331.1 108563015 4099205 609910..619467 1 NC_008086.1 putative vacuolating cytotoxin (VacA)-like protein 619467 4099205 HPAG1_0590 Helicobacter pylori HPAG1 putative vacuolating cytotoxin (VacA)-like protein YP_627331.1 609910 D 357544 CDS YP_627332.1 108563016 4099206 complement(619529..620038) 1 NC_008086.1 hypothetical protein 620038 4099206 HPAG1_0591 Helicobacter pylori HPAG1 hypothetical protein YP_627332.1 619529 R 357544 CDS YP_627333.1 108563017 4099207 complement(620046..620285) 1 NC_008086.1 ABC transporter, permease 620285 4099207 HPAG1_0592 Helicobacter pylori HPAG1 ABC transporter, permease YP_627333.1 620046 R 357544 CDS YP_627334.1 108563018 4099208 complement(620285..620761) 1 NC_008086.1 ABC transporter, ATP-binding protein 620761 4099208 HPAG1_0593 Helicobacter pylori HPAG1 ABC transporter, ATP-binding protein YP_627334.1 620285 R 357544 CDS YP_627335.1 108563019 4099209 complement(620745..620981) 1 NC_008086.1 ABC transporter, ATP-binding protein 620981 4099209 HPAG1_0594 Helicobacter pylori HPAG1 ABC transporter, ATP-binding protein YP_627335.1 620745 R 357544 CDS YP_627336.1 108563020 4099210 complement(621287..621619) 1 NC_008086.1 hypothetical protein 621619 4099210 HPAG1_0595 Helicobacter pylori HPAG1 hypothetical protein YP_627336.1 621287 R 357544 CDS YP_627337.1 108563021 4099211 complement(621744..623714) 1 NC_008086.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 623714 ligA 4099211 ligA Helicobacter pylori HPAG1 NAD-dependent DNA ligase LigA YP_627337.1 621744 R 357544 CDS YP_627338.1 108563022 4099212 623792..624733 1 NC_008086.1 chemotaxis protein 624733 4099212 HPAG1_0597 Helicobacter pylori HPAG1 chemotaxis protein YP_627338.1 623792 D 357544 CDS YP_627339.1 108563023 4099213 624768..626501 1 NC_008086.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 626501 aspS 4099213 aspS Helicobacter pylori HPAG1 aspartyl-tRNA synthetase YP_627339.1 624768 D 357544 CDS YP_627340.1 108563024 4099214 626518..627093 1 NC_008086.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 627093 adk 4099214 adk Helicobacter pylori HPAG1 adenylate kinase YP_627340.1 626518 D 357544 CDS YP_627341.1 108563025 4099215 627119..628117 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 628117 4099215 HPAG1_0600 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627341.1 627119 D 357544 CDS YP_627342.1 108563026 4099216 628137..628718 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 628718 4099216 HPAG1_0601 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627342.1 628137 D 357544 CDS YP_627343.1 108563027 4099217 628657..629463 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 629463 4099217 HPAG1_0602 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627343.1 628657 D 357544 CDS YP_627344.1 108563028 4099218 629518..630039 1 NC_008086.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 630039 4099218 HPAG1_0603 Helicobacter pylori HPAG1 inorganic pyrophosphatase YP_627344.1 629518 D 357544 CDS YP_627345.1 108563029 4099219 complement(630187..632493) 1 NC_008086.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 632493 4099219 HPAG1_0604 Helicobacter pylori HPAG1 recombination and DNA strand exchange inhibitor protein YP_627345.1 630187 R 357544 CDS YP_627346.1 108563030 4099220 complement(632451..632816) 1 NC_008086.1 hypothetical protein 632816 4099220 HPAG1_0605 Helicobacter pylori HPAG1 hypothetical protein YP_627346.1 632451 R 357544 CDS YP_627347.1 108563031 4098849 complement(632816..634165) 1 NC_008086.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 634165 murC 4098849 murC Helicobacter pylori HPAG1 UDP-N-acetylmuramate--L-alanine ligase YP_627347.1 632816 R 357544 CDS YP_627348.1 108563032 4098850 complement(634158..635285) 1 NC_008086.1 hypothetical protein 635285 4098850 HPAG1_0607 Helicobacter pylori HPAG1 hypothetical protein YP_627348.1 634158 R 357544 CDS YP_627349.1 108563033 4098851 635405..636484 1 NC_008086.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 636484 ispG 4098851 ispG Helicobacter pylori HPAG1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_627349.1 635405 D 357544 CDS YP_627350.1 108563034 4098852 636487..637692 1 NC_008086.1 tetrahydrodipicolinate N-succinyltransferase 637692 4098852 HPAG1_0609 Helicobacter pylori HPAG1 tetrahydrodipicolinate N-succinyltransferase YP_627350.1 636487 D 357544 CDS YP_627351.1 108563035 4098853 637704..638762 1 NC_008086.1 hypothetical protein 638762 4098853 HPAG1_0610 Helicobacter pylori HPAG1 hypothetical protein YP_627351.1 637704 D 357544 CDS YP_627352.1 108563036 4098854 638995..639501 1 NC_008086.1 hypothetical protein 639501 4098854 HPAG1_0611 Helicobacter pylori HPAG1 hypothetical protein YP_627352.1 638995 D 357544 CDS YP_627353.1 108563037 4098855 639522..641042 1 NC_008086.1 hypothetical protein 641042 4098855 HPAG1_0612 Helicobacter pylori HPAG1 hypothetical protein YP_627353.1 639522 D 357544 CDS YP_627354.1 108563038 4098856 complement(641088..641672) 1 NC_008086.1 modulator of drug activity 641672 4098856 HPAG1_0613 Helicobacter pylori HPAG1 modulator of drug activity YP_627354.1 641088 R 357544 CDS YP_627355.1 108563039 4098857 641803..642957 1 NC_008086.1 quinone-reactive Ni/Fe hydrogenase HydA 642957 4098857 HPAG1_0614 Helicobacter pylori HPAG1 quinone-reactive Ni/Fe hydrogenase HydA YP_627355.1 641803 D 357544 CDS YP_627356.1 108563040 4098858 642967..644703 1 NC_008086.1 quinone-reactive Ni/Fe hydrogenase HydB 644703 4098858 HPAG1_0615 Helicobacter pylori HPAG1 quinone-reactive Ni/Fe hydrogenase HydB YP_627356.1 642967 D 357544 CDS YP_627357.1 108563041 4098859 644717..645391 1 NC_008086.1 quinone-reactive Ni/Fe hydrogenase HydC 645391 4098859 HPAG1_0616 Helicobacter pylori HPAG1 quinone-reactive Ni/Fe hydrogenase HydC YP_627357.1 644717 D 357544 CDS YP_627358.1 108563042 4098860 645388..645924 1 NC_008086.1 quinone-reactive Ni/Fe hydrogenase HydD 645924 4098860 HPAG1_0617 Helicobacter pylori HPAG1 quinone-reactive Ni/Fe hydrogenase HydD YP_627358.1 645388 D 357544 CDS YP_627359.1 108563043 4098861 645926..647464 1 NC_008086.1 hypothetical protein 647464 4098861 HPAG1_0618 Helicobacter pylori HPAG1 hypothetical protein YP_627359.1 645926 D 357544 CDS YP_627360.1 108563044 4098862 complement(647469..647882) 1 NC_008086.1 hypothetical protein 647882 4098862 HPAG1_0619 Helicobacter pylori HPAG1 hypothetical protein YP_627360.1 647469 R 357544 CDS YP_627361.1 108563045 4098863 complement(648011..648463) 1 NC_008086.1 hypothetical protein 648463 4098863 HPAG1_0620 Helicobacter pylori HPAG1 hypothetical protein YP_627361.1 648011 R 357544 CDS YP_627362.1 108563046 4098864 648650..649573 1 NC_008086.1 outer membrane protein HopH 649573 4098864 HPAG1_0621 Helicobacter pylori HPAG1 outer membrane protein HopH YP_627362.1 648650 D 357544 CDS YP_627363.1 108563047 4098865 complement(649640..650326) 1 NC_008086.1 hypothetical protein 650326 4098865 HPAG1_0622 Helicobacter pylori HPAG1 hypothetical protein YP_627363.1 649640 R 357544 CDS YP_627364.1 108563048 4098866 650389..651666 1 NC_008086.1 poly(A) polymerase 651666 4098866 HPAG1_0623 Helicobacter pylori HPAG1 poly(A) polymerase YP_627364.1 650389 D 357544 CDS YP_627365.1 108563049 4098867 651674..651748 1 NC_008086.1 hypothetical protein 651748 4098867 HPAG1_0624 Helicobacter pylori HPAG1 hypothetical protein YP_627365.1 651674 D 357544 CDS YP_627366.1 108563050 4098868 651763..652620 1 NC_008086.1 putative 3-hydroxyacid dehydrogenase 652620 4098868 HPAG1_0625 Helicobacter pylori HPAG1 putative 3-hydroxyacid dehydrogenase YP_627366.1 651763 D 357544 CDS YP_627367.1 108563051 4098752 652622..652738 1 NC_008086.1 NAD(P)H-flavin oxidoreductase 652738 4098752 HPAG1_0626 Helicobacter pylori HPAG1 NAD(P)H-flavin oxidoreductase YP_627367.1 652622 D 357544 CDS YP_627368.1 108563052 4098753 652717..653274 1 NC_008086.1 NAD(P)H-flavin oxidoreductase 653274 4098753 HPAG1_0627 Helicobacter pylori HPAG1 NAD(P)H-flavin oxidoreductase YP_627368.1 652717 D 357544 CDS YP_627369.1 108563053 4098754 653440..654759 1 NC_008086.1 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 654759 4098754 HPAG1_0628 Helicobacter pylori HPAG1 glutamylglutaminyl-tRNA synthetase YP_627369.1 653440 D 357544 CDS YP_627370.1 108563054 4098755 654756..655049 1 NC_008086.1 hypothetical protein 655049 4098755 HPAG1_0629 Helicobacter pylori HPAG1 hypothetical protein YP_627370.1 654756 D 357544 CDS YP_627371.1 108563055 4098756 655058..656740 1 NC_008086.1 soluble lytic murein transglycosylase 656740 4098756 HPAG1_0630 Helicobacter pylori HPAG1 soluble lytic murein transglycosylase YP_627371.1 655058 D 357544 CDS YP_627372.1 108563056 4098757 656737..657558 1 NC_008086.1 UDP-glucose pyrophosphorylase 657558 4098757 HPAG1_0631 Helicobacter pylori HPAG1 UDP-glucose pyrophosphorylase YP_627372.1 656737 D 357544 CDS YP_627373.1 108563057 4098758 657569..657976 1 NC_008086.1 hypothetical protein 657976 4098758 HPAG1_0632 Helicobacter pylori HPAG1 hypothetical protein YP_627373.1 657569 D 357544 CDS YP_627374.1 108563058 4098759 657979..659247 1 NC_008086.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 659247 4098759 HPAG1_0633 Helicobacter pylori HPAG1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_627374.1 657979 D 357544 CDS YP_627375.1 108563059 4098760 659305..660711 1 NC_008086.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 660711 aspA 4098760 aspA Helicobacter pylori HPAG1 aspartate ammonia-lyase YP_627375.1 659305 D 357544 CDS YP_627376.1 108563060 4098761 660717..661346 1 NC_008086.1 hypothetical protein 661346 4098761 HPAG1_0635 Helicobacter pylori HPAG1 hypothetical protein YP_627376.1 660717 D 357544 CDS YP_627377.1 108563061 4098762 complement(661355..662590) 1 NC_008086.1 alpha 1,3-fucosyltransferase 662590 4098762 HPAG1_0636 Helicobacter pylori HPAG1 alpha 1,3-fucosyltransferase YP_627377.1 661355 R 357544 CDS YP_627378.1 108563062 4098763 complement(662721..663344) 1 NC_008086.1 phosphoserine phosphatase 663344 4098763 HPAG1_0637 Helicobacter pylori HPAG1 phosphoserine phosphatase YP_627378.1 662721 R 357544 CDS YP_627379.1 108563063 4098764 complement(663359..663862) 1 NC_008086.1 nonheme iron-containing ferritin 663862 4098764 HPAG1_0638 Helicobacter pylori HPAG1 nonheme iron-containing ferritin YP_627379.1 663359 R 357544 CDS YP_627380.1 108563064 4098765 664161..665243 1 NC_008086.1 hypothetical protein 665243 4098765 HPAG1_0639 Helicobacter pylori HPAG1 hypothetical protein YP_627380.1 664161 D 357544 CDS YP_627381.1 108563065 4098766 665326..668076 1 NC_008086.1 protective surface antigen D15 668076 4098766 HPAG1_0640 Helicobacter pylori HPAG1 protective surface antigen D15 YP_627381.1 665326 D 357544 CDS YP_627382.1 108563066 4098767 667988..669139 1 NC_008086.1 hypothetical protein 669139 4098767 HPAG1_0641 Helicobacter pylori HPAG1 hypothetical protein YP_627382.1 667988 D 357544 CDS YP_627383.1 108563067 4098768 669145..670443 1 NC_008086.1 processing protease 670443 4098768 HPAG1_0642 Helicobacter pylori HPAG1 processing protease YP_627383.1 669145 D 357544 CDS YP_627384.1 108563068 4098769 670440..671867 1 NC_008086.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 671867 gatB 4098769 gatB Helicobacter pylori HPAG1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_627384.1 670440 D 357544 CDS YP_627385.1 108563069 4098770 671867..673111 1 NC_008086.1 hypothetical protein 673111 4098770 HPAG1_0644 Helicobacter pylori HPAG1 hypothetical protein YP_627385.1 671867 D 357544 CDS YP_627386.1 108563070 4098829 673122..674138 1 NC_008086.1 hypothetical protein 674138 4098829 HPAG1_0645 Helicobacter pylori HPAG1 hypothetical protein YP_627386.1 673122 D 357544 CDS YP_627387.1 108563071 4098830 674125..674556 1 NC_008086.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 674556 rnhA 4098830 rnhA Helicobacter pylori HPAG1 ribonuclease H YP_627387.1 674125 D 357544 CDS YP_627388.1 108563072 4098831 674565..675287 1 NC_008086.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 675287 rnc 4098831 rnc Helicobacter pylori HPAG1 ribonuclease III YP_627388.1 674565 D 357544 CDS YP_627389.1 108563073 4098832 675284..676381 1 NC_008086.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 676381 4098832 HPAG1_0648 Helicobacter pylori HPAG1 chorismate synthase YP_627389.1 675284 D 357544 CDS YP_627390.1 108563074 4098833 676419..676934 1 NC_008086.1 hypothetical protein 676934 4098833 HPAG1_0649 Helicobacter pylori HPAG1 hypothetical protein YP_627390.1 676419 D 357544 CDS YP_627391.1 108563075 4098834 676934..678307 1 NC_008086.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 678307 4098834 HPAG1_0650 Helicobacter pylori HPAG1 coproporphyrinogen III oxidase YP_627391.1 676934 D 357544 CDS YP_627392.1 108563076 4098835 678304..679605 1 NC_008086.1 glycerol-3-phosphate dehydrogenase 679605 4098835 HPAG1_0651 Helicobacter pylori HPAG1 glycerol-3-phosphate dehydrogenase YP_627392.1 678304 D 357544 CDS YP_627393.1 108563077 4098836 679681..680334 1 NC_008086.1 hypothetical protein 680334 4098836 HPAG1_0652 Helicobacter pylori HPAG1 hypothetical protein YP_627393.1 679681 D 357544 CDS YP_627394.1 108563078 4098837 680286..684455 1 NC_008086.1 hypothetical protein 684455 4098837 HPAG1_0653 Helicobacter pylori HPAG1 hypothetical protein YP_627394.1 680286 D 357544 CDS YP_627395.1 108563079 4098838 684699..685511 1 NC_008086.1 outer membrane protein HorF 685511 4098838 HPAG1_0654 Helicobacter pylori HPAG1 outer membrane protein HorF YP_627395.1 684699 D 357544 CDS YP_627396.1 108563080 4098839 685670..686842 1 NC_008086.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 686842 4098839 HPAG1_0655 Helicobacter pylori HPAG1 aspartate aminotransferase YP_627396.1 685670 D 357544 CDS YP_627397.1 108563081 4098840 686979..687929 1 NC_008086.1 hypothetical protein 687929 4098840 HPAG1_0656 Helicobacter pylori HPAG1 hypothetical protein YP_627397.1 686979 D 357544 CDS YP_627398.1 108563082 4098841 687947..688813 1 NC_008086.1 hypothetical protein 688813 4098841 HPAG1_0657 Helicobacter pylori HPAG1 hypothetical protein YP_627398.1 687947 D 357544 CDS YP_627399.1 108563083 4098842 688821..689891 1 NC_008086.1 integrase-recombinase protein 689891 4098842 HPAG1_0658 Helicobacter pylori HPAG1 integrase-recombinase protein YP_627399.1 688821 D 357544 CDS YP_627400.1 108563084 4098843 complement(689954..690460) 1 NC_008086.1 methylated-DNA--protein-cysteine methyltransferase 690460 4098843 HPAG1_0659 Helicobacter pylori HPAG1 methylated-DNA--protein-cysteine methyltransferase YP_627400.1 689954 R 357544 CDS YP_627401.1 108563085 4098844 complement(690464..691231) 1 NC_008086.1 hypothetical protein 691231 4098844 HPAG1_0660 Helicobacter pylori HPAG1 hypothetical protein YP_627401.1 690464 R 357544 CDS YP_627402.1 108563086 4098845 complement(691345..692292) 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 692292 4098845 HPAG1_0661 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627402.1 691345 R 357544 CDS YP_627403.1 108563087 4098846 complement(692354..694720) 1 NC_008086.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 694720 4098846 HPAG1_0662 Helicobacter pylori HPAG1 ribonucleotide-diphosphate reductase subunit alpha YP_627403.1 692354 R 357544 CDS YP_627404.1 108563088 4098847 complement(694886..695380) 1 NC_008086.1 hypothetical protein 695380 4098847 HPAG1_0663 Helicobacter pylori HPAG1 hypothetical protein YP_627404.1 694886 R 357544 CDS YP_627405.1 108563089 4098848 complement(695420..695860) 1 NC_008086.1 hypothetical protein 695860 4098848 HPAG1_0664 Helicobacter pylori HPAG1 hypothetical protein YP_627405.1 695420 R 357544 CDS YP_627406.1 108563090 4098202 complement(696123..696629) 1 NC_008086.1 hypothetical protein 696629 4098202 HPAG1_0665 Helicobacter pylori HPAG1 hypothetical protein YP_627406.1 696123 R 357544 CDS YP_627407.1 108563091 4098203 complement(696669..697049) 1 NC_008086.1 hypothetical protein 697049 4098203 HPAG1_0666 Helicobacter pylori HPAG1 hypothetical protein YP_627407.1 696669 R 357544 CDS YP_627408.1 108563092 4098204 complement(697205..698506) 1 NC_008086.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 698506 glmU 4098204 glmU Helicobacter pylori HPAG1 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_627408.1 697205 R 357544 CDS YP_627409.1 108563093 4098205 698588..699334 1 NC_008086.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 699334 fliP 4098205 fliP Helicobacter pylori HPAG1 flagellar biosynthesis protein FliP YP_627409.1 698588 D 357544 CDS YP_627410.1 108563094 4098206 complement(699373..701676) 1 NC_008086.1 iron(III) dicitrate transport protein 701676 4098206 HPAG1_0669 Helicobacter pylori HPAG1 iron(III) dicitrate transport protein YP_627410.1 699373 R 357544 CDS YP_627411.1 108563095 4098207 complement(701927..703861) 1 NC_008086.1 iron(II) transport protein 703861 4098207 HPAG1_0670 Helicobacter pylori HPAG1 iron(II) transport protein YP_627411.1 701927 R 357544 CDS YP_627412.1 108563096 4098208 703975..704805 1 NC_008086.1 hypothetical protein 704805 4098208 HPAG1_0671 Helicobacter pylori HPAG1 hypothetical protein YP_627412.1 703975 D 357544 CDS YP_627413.1 108563097 4098209 704859..706073 1 NC_008086.1 putative type II cytosine specific methyltransferase 706073 4098209 HPAG1_0672 Helicobacter pylori HPAG1 putative type II cytosine specific methyltransferase YP_627413.1 704859 D 357544 CDS YP_627414.1 108563098 4098210 706076..706948 1 NC_008086.1 putative type II restriction enzyme 706948 4098210 HPAG1_0673 Helicobacter pylori HPAG1 putative type II restriction enzyme YP_627414.1 706076 D 357544 CDS YP_627415.1 108563099 4098211 707082..707441 1 NC_008086.1 hypothetical protein 707441 4098211 HPAG1_0674 Helicobacter pylori HPAG1 hypothetical protein YP_627415.1 707082 D 357544 CDS YP_627416.1 108563100 4098212 707722..708897 1 NC_008086.1 acetyl coenzyme A acetyltransferase 708897 4098212 HPAG1_0675 Helicobacter pylori HPAG1 acetyl coenzyme A acetyltransferase YP_627416.1 707722 D 357544 CDS YP_627417.1 108563101 4098213 708908..709606 1 NC_008086.1 succinyl-CoA-transferase subunit A 709606 4098213 HPAG1_0676 Helicobacter pylori HPAG1 succinyl-CoA-transferase subunit A YP_627417.1 708908 D 357544 CDS YP_627418.1 108563102 4098214 709603..710226 1 NC_008086.1 succinyl-CoA-transferase subunit B 710226 4098214 HPAG1_0677 Helicobacter pylori HPAG1 succinyl-CoA-transferase subunit B YP_627418.1 709603 D 357544 CDS YP_627419.1 108563103 4098215 710245..711609 1 NC_008086.1 short-chain fatty acids transporter 711609 4098215 HPAG1_0678 Helicobacter pylori HPAG1 short-chain fatty acids transporter YP_627419.1 710245 D 357544 CDS YP_627420.1 108563104 4098216 711734..712735 1 NC_008086.1 putative outer membrane protein 712735 4098216 HPAG1_0679 Helicobacter pylori HPAG1 putative outer membrane protein YP_627420.1 711734 D 357544 CDS YP_627421.1 108563105 4098217 712970..715111 1 NC_008086.1 hydantoin utilization protein A 715111 4098217 HPAG1_0680 Helicobacter pylori HPAG1 hydantoin utilization protein A YP_627421.1 712970 D 357544 CDS YP_627422.1 108563106 4098218 715123..717420 1 NC_008086.1 N-methylhydantoinase 717420 4098218 HPAG1_0681 Helicobacter pylori HPAG1 N-methylhydantoinase YP_627422.1 715123 D 357544 CDS YP_627423.1 108563107 4098219 717431..717937 1 NC_008086.1 hypothetical protein 717937 4098219 HPAG1_0682 Helicobacter pylori HPAG1 hypothetical protein YP_627423.1 717431 D 357544 CDS YP_627424.1 108563108 4098220 718125..718316 1 NC_008086.1 hypothetical protein 718316 4098220 HPAG1_0683 Helicobacter pylori HPAG1 hypothetical protein YP_627424.1 718125 D 357544 CDS YP_627425.1 108563109 4098693 718326..719354 1 NC_008086.1 hypothetical protein 719354 4098693 HPAG1_0684 Helicobacter pylori HPAG1 hypothetical protein YP_627425.1 718326 D 357544 CDS YP_627426.1 108563110 4098694 719347..719733 1 NC_008086.1 diacylglycerol kinase 719733 4098694 HPAG1_0685 Helicobacter pylori HPAG1 diacylglycerol kinase YP_627426.1 719347 D 357544 CDS YP_627427.1 108563111 4098695 719749..722232 1 NC_008086.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 722232 4098695 HPAG1_0686 Helicobacter pylori HPAG1 DNA gyrase subunit A YP_627427.1 719749 D 357544 CDS YP_627428.1 108563112 4098696 722229..722705 1 NC_008086.1 hypothetical protein 722705 4098696 HPAG1_0687 Helicobacter pylori HPAG1 hypothetical protein YP_627428.1 722229 D 357544 CDS YP_627429.1 108563113 4098697 722702..723847 1 NC_008086.1 transcriptional activator of flagella proteins 723847 4098697 HPAG1_0688 Helicobacter pylori HPAG1 transcriptional activator of flagella proteins YP_627429.1 722702 D 357544 CDS YP_627430.1 108563114 4098698 723974..724504 1 NC_008086.1 hypothetical protein 724504 4098698 HPAG1_0689 Helicobacter pylori HPAG1 hypothetical protein YP_627430.1 723974 D 357544 CDS YP_627431.1 108563115 4098699 complement(724748..727573) 1 NC_008086.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 727573 uvrA 4098699 uvrA Helicobacter pylori HPAG1 excinuclease ABC subunit A YP_627431.1 724748 R 357544 CDS YP_627432.1 108563116 4098700 727738..728559 1 NC_008086.1 outer membrane protein HopE 728559 4098700 HPAG1_0691 Helicobacter pylori HPAG1 outer membrane protein HopE YP_627432.1 727738 D 357544 CDS YP_627433.1 108563117 4098701 728737..729663 1 NC_008086.1 S-adenosyl-methyltransferase MraW 729663 mraW 4098701 mraW Helicobacter pylori HPAG1 S-adenosyl-methyltransferase MraW YP_627433.1 728737 D 357544 CDS YP_627434.1 108563118 4098702 729684..730028 1 NC_008086.1 hypothetical protein 730028 4098702 HPAG1_0693 Helicobacter pylori HPAG1 hypothetical protein YP_627434.1 729684 D 357544 CDS YP_627435.1 108563119 4098703 730184..731086 1 NC_008086.1 hypothetical protein 731086 4098703 HPAG1_0694 Helicobacter pylori HPAG1 hypothetical protein YP_627435.1 730184 D 357544 CDS YP_627436.1 108563120 4098704 731310..733313 1 NC_008086.1 putative outer membrane protein HomB 733313 4098704 HPAG1_0695 Helicobacter pylori HPAG1 putative outer membrane protein HomB YP_627436.1 731310 D 357544 CDS YP_627437.1 108563121 4098705 733504..734724 1 NC_008086.1 hypothetical protein 734724 4098705 HPAG1_0696 Helicobacter pylori HPAG1 hypothetical protein YP_627437.1 733504 D 357544 CDS YP_627438.1 108563122 4098706 734724..734972 1 NC_008086.1 hypothetical protein 734972 4098706 HPAG1_0697 Helicobacter pylori HPAG1 hypothetical protein YP_627438.1 734724 D 357544 CDS YP_627439.1 108563123 4098707 734978..735427 1 NC_008086.1 hypothetical protein 735427 4098707 HPAG1_0698 Helicobacter pylori HPAG1 hypothetical protein YP_627439.1 734978 D 357544 CDS YP_627440.1 108563124 4098708 complement(735439..736683) 1 NC_008086.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 736683 4098708 HPAG1_0699 Helicobacter pylori HPAG1 RNA polymerase factor sigma-54 YP_627440.1 735439 R 357544 CDS YP_627441.1 108563125 4098709 complement(736686..737408) 1 NC_008086.1 ABC transporter, ATP-binding protein 737408 4098709 HPAG1_0700 Helicobacter pylori HPAG1 ABC transporter, ATP-binding protein YP_627441.1 736686 R 357544 CDS YP_627442.1 108563126 4098710 complement(737421..737822) 1 NC_008086.1 hypothetical protein 737822 4098710 HPAG1_0701 Helicobacter pylori HPAG1 hypothetical protein YP_627442.1 737421 R 357544 CDS YP_627443.1 108563127 4098711 complement(737819..739537) 1 NC_008086.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 739537 4098711 HPAG1_0702 Helicobacter pylori HPAG1 DNA polymerase III subunits gamma and tau YP_627443.1 737819 R 357544 CDS YP_627444.1 108563128 4098712 complement(739606..740238) 1 NC_008086.1 hypothetical protein 740238 4098712 HPAG1_0703 Helicobacter pylori HPAG1 hypothetical protein YP_627444.1 739606 R 357544 CDS YP_627445.1 108563129 4098713 740445..740930 1 NC_008086.1 hypothetical protein 740930 4098713 HPAG1_0704 Helicobacter pylori HPAG1 hypothetical protein YP_627445.1 740445 D 357544 CDS YP_627446.1 108563130 4098714 740958..741419 1 NC_008086.1 hypothetical protein 741419 4098714 HPAG1_0705 Helicobacter pylori HPAG1 hypothetical protein YP_627446.1 740958 D 357544 CDS YP_627447.1 108563131 4098715 741785..743638 1 NC_008086.1 outer membrane protein SabB 743638 4098715 HPAG1_0706 Helicobacter pylori HPAG1 outer membrane protein SabB YP_627447.1 741785 D 357544 CDS YP_627448.1 108563132 4098716 complement(743705..745036) 1 NC_008086.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 745036 4098716 HPAG1_0707 Helicobacter pylori HPAG1 anaerobic C4-dicarboxylate transporter YP_627448.1 743705 R 357544 CDS YP_627449.1 108563133 4098717 745165..746163 1 NC_008086.1 L-asparaginase II 746163 4098717 HPAG1_0708 Helicobacter pylori HPAG1 L-asparaginase II YP_627449.1 745165 D 357544 CDS YP_627450.1 108563134 4098718 complement(746303..748258) 1 NC_008086.1 outer membrane protein SabA 748258 4098718 HPAG1_0709 Helicobacter pylori HPAG1 outer membrane protein SabA YP_627450.1 746303 R 357544 CDS YP_627451.1 108563135 4098719 complement(748468..749385) 1 NC_008086.1 outer membrane protein 749385 4098719 HPAG1_0710 Helicobacter pylori HPAG1 outer membrane protein YP_627451.1 748468 R 357544 CDS YP_627452.1 108563136 4098720 complement(749355..750341) 1 NC_008086.1 transcriptional regulator 750341 4098720 HPAG1_0711 Helicobacter pylori HPAG1 transcriptional regulator YP_627452.1 749355 R 357544 CDS YP_627453.1 108563137 4098721 complement(750435..751451) 1 NC_008086.1 hypothetical protein 751451 4098721 HPAG1_0712 Helicobacter pylori HPAG1 hypothetical protein YP_627453.1 750435 R 357544 CDS YP_627454.1 108563138 4098722 complement(751487..752554) 1 NC_008086.1 hypothetical protein 752554 4098722 HPAG1_0713 Helicobacter pylori HPAG1 hypothetical protein YP_627454.1 751487 R 357544 CDS YP_627455.1 108563139 4098723 complement(752563..752868) 1 NC_008086.1 hypothetical protein 752868 4098723 HPAG1_0714 Helicobacter pylori HPAG1 hypothetical protein YP_627455.1 752563 R 357544 CDS YP_627456.1 108563140 4098724 complement(752960..754678) 1 NC_008086.1 hypothetical protein 754678 4098724 HPAG1_0715 Helicobacter pylori HPAG1 hypothetical protein YP_627456.1 752960 R 357544 CDS YP_627457.1 108563141 4098725 complement(754675..755430) 1 NC_008086.1 hypothetical protein 755430 4098725 HPAG1_0716 Helicobacter pylori HPAG1 hypothetical protein YP_627457.1 754675 R 357544 CDS YP_627458.1 108563142 4098726 complement(755492..756550) 1 NC_008086.1 hypothetical protein 756550 4098726 HPAG1_0717 Helicobacter pylori HPAG1 hypothetical protein YP_627458.1 755492 R 357544 CDS YP_627459.1 108563143 4098727 complement(756637..757956) 1 NC_008086.1 hypothetical protein 757956 4098727 HPAG1_0718 Helicobacter pylori HPAG1 hypothetical protein YP_627459.1 756637 R 357544 CDS YP_627460.1 108563144 4098728 complement(757958..758419) 1 NC_008086.1 xanthine guanine phosphoribosyl transferase 758419 4098728 HPAG1_0719 Helicobacter pylori HPAG1 xanthine guanine phosphoribosyl transferase YP_627460.1 757958 R 357544 CDS YP_627461.1 108563145 4098729 complement(758428..759537) 1 NC_008086.1 phosphoserine aminotransferase 759537 4098729 HPAG1_0720 Helicobacter pylori HPAG1 phosphoserine aminotransferase YP_627461.1 758428 R 357544 CDS YP_627462.1 108563146 4098730 759687..760163 1 NC_008086.1 phosphatidylglycerophosphatase A 760163 4098730 HPAG1_0721 Helicobacter pylori HPAG1 phosphatidylglycerophosphatase A YP_627462.1 759687 D 357544 CDS YP_627463.1 108563147 4098731 760241..761284 1 NC_008086.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 761284 ddl 4098731 ddl Helicobacter pylori HPAG1 D-alanyl-alanine synthetase A YP_627463.1 760241 D 357544 CDS YP_627464.1 108563148 4098810 761284..762009 1 NC_008086.1 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 762009 4098810 HPAG1_0723 Helicobacter pylori HPAG1 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase YP_627464.1 761284 D 357544 CDS YP_627465.1 108563149 4098811 761996..763477 1 NC_008086.1 UDP-MurNac-pentapeptide presynthetase 763477 4098811 HPAG1_0724 Helicobacter pylori HPAG1 UDP-MurNac-pentapeptide presynthetase YP_627465.1 761996 D 357544 CDS YP_627466.1 108563150 4098812 763487..763972 1 NC_008086.1 histidine triad (HIT) family protein 763972 4098812 HPAG1_0725 Helicobacter pylori HPAG1 histidine triad (HIT) family protein YP_627466.1 763487 D 357544 CDS YP_627467.1 108563151 4098813 764037..764993 1 NC_008086.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 764993 4098813 HPAG1_0726 Helicobacter pylori HPAG1 ribose-phosphate pyrophosphokinase YP_627467.1 764037 D 357544 CDS YP_627468.1 108563152 4098815 complement(765054..766199) 1 NC_008086.1 rod shape-determining protein 766199 4098815 HPAG1_0727 Helicobacter pylori HPAG1 rod shape-determining protein YP_627468.1 765054 R 357544 CDS YP_627469.1 108563153 4098816 complement(766222..766842) 1 NC_008086.1 hypothetical protein 766842 4098816 HPAG1_0728 Helicobacter pylori HPAG1 hypothetical protein YP_627469.1 766222 R 357544 CDS YP_627470.1 108563154 4098817 complement(766980..767435) 1 NC_008086.1 hypothetical protein 767435 4098817 HPAG1_0729 Helicobacter pylori HPAG1 hypothetical protein YP_627470.1 766980 R 357544 CDS YP_627471.1 108563155 4098818 767571..768554 1 NC_008086.1 hypothetical protein 768554 4098818 HPAG1_0730 Helicobacter pylori HPAG1 hypothetical protein YP_627471.1 767571 D 357544 CDS YP_627472.1 108563156 4098819 768505..769764 1 NC_008086.1 hypothetical protein 769764 4098819 HPAG1_0731 Helicobacter pylori HPAG1 hypothetical protein YP_627472.1 768505 D 357544 CDS YP_627473.1 108563157 4098820 769775..770956 1 NC_008086.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 770956 trmB 4098820 trmB Helicobacter pylori HPAG1 tRNA (guanine-N(7)-)-methyltransferase YP_627473.1 769775 D 357544 CDS YP_627474.1 108563158 4098821 770953..771624 1 NC_008086.1 cell division protein 771624 4098821 HPAG1_0733 Helicobacter pylori HPAG1 cell division protein YP_627474.1 770953 D 357544 CDS YP_627475.1 108563159 4098822 771611..772417 1 NC_008086.1 cell division membrane protein 772417 4098822 HPAG1_0734 Helicobacter pylori HPAG1 cell division membrane protein YP_627475.1 771611 D 357544 CDS YP_627476.1 108563160 4098823 772410..773612 1 NC_008086.1 hypothetical protein 773612 4098823 HPAG1_0735 Helicobacter pylori HPAG1 hypothetical protein YP_627476.1 772410 D 357544 CDS YP_627477.1 108563161 4098824 773705..774064 1 NC_008086.1 possibly involved in flagella export; flagellar protein FlaG 774064 4098824 HPAG1_0736 Helicobacter pylori HPAG1 flagellar protein FlaG YP_627477.1 773705 D 357544 CDS YP_627478.1 108563162 4098825 774081..776138 1 NC_008086.1 involved in flagellin assembly; flagellar capping protein 776138 fliD 4098825 fliD Helicobacter pylori HPAG1 flagellar capping protein YP_627478.1 774081 D 357544 CDS YP_627479.1 108563163 4098826 776178..776558 1 NC_008086.1 flagellin specific chaperone; flagellar protein FliS 776558 fliS 4098826 fliS Helicobacter pylori HPAG1 flagellar protein FliS YP_627479.1 776178 D 357544 CDS YP_627480.1 108563164 4098827 776545..776784 1 NC_008086.1 hypothetical protein 776784 4098827 HPAG1_0739 Helicobacter pylori HPAG1 hypothetical protein YP_627480.1 776545 D 357544 CDS YP_627481.1 108563165 4098828 776837..777496 1 NC_008086.1 molybdopterin biosynthesis protein 777496 4098828 HPAG1_0740 Helicobacter pylori HPAG1 molybdopterin biosynthesis protein YP_627481.1 776837 D 357544 CDS YP_627482.1 108563166 4099098 777468..777671 1 NC_008086.1 hypothetical protein 777671 4099098 HPAG1_0741 Helicobacter pylori HPAG1 hypothetical protein YP_627482.1 777468 D 357544 CDS YP_627483.1 108563167 4099099 777675..778553 1 NC_008086.1 carbon-nitrogen hydrolase 778553 4099099 HPAG1_0742 Helicobacter pylori HPAG1 carbon-nitrogen hydrolase YP_627483.1 777675 D 357544 CDS YP_627484.1 108563168 4099100 778680..779993 1 NC_008086.1 hypothetical protein 779993 4099100 HPAG1_0743 Helicobacter pylori HPAG1 hypothetical protein YP_627484.1 778680 D 357544 CDS YP_627485.1 108563169 4099101 780056..781309 1 NC_008086.1 hypothetical protein 781309 4099101 HPAG1_0744 Helicobacter pylori HPAG1 hypothetical protein YP_627485.1 780056 D 357544 CDS YP_627486.1 108563170 4099102 complement(781310..782899) 1 NC_008086.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 782899 4099102 HPAG1_0745 Helicobacter pylori HPAG1 phosphodiesterase YP_627486.1 781310 R 357544 CDS YP_627487.1 108563171 4099103 complement(782799..783446) 1 NC_008086.1 hypothetical protein 783446 4099103 HPAG1_0746 Helicobacter pylori HPAG1 hypothetical protein YP_627487.1 782799 R 357544 CDS YP_627488.1 108563172 4099104 783571..784128 1 NC_008086.1 hypothetical protein 784128 4099104 HPAG1_0747 Helicobacter pylori HPAG1 hypothetical protein YP_627488.1 783571 D 357544 CDS YP_627489.1 108563173 4099105 784134..785015 1 NC_008086.1 signal recognition particle receptor 785015 4099105 HPAG1_0748 Helicobacter pylori HPAG1 signal recognition particle receptor YP_627489.1 784134 D 357544 CDS YP_627490.1 108563174 4099106 complement(785024..785338) 1 NC_008086.1 hypothetical protein 785338 4099106 HPAG1_0749 Helicobacter pylori HPAG1 hypothetical protein YP_627490.1 785024 R 357544 CDS YP_627491.1 108563175 4099107 complement(785397..786377) 1 NC_008086.1 hypothetical protein 786377 4099107 HPAG1_0750 Helicobacter pylori HPAG1 hypothetical protein YP_627491.1 785397 R 357544 CDS YP_627492.1 108563176 4099108 complement(786417..786632) 1 NC_008086.1 hypothetical protein 786632 4099108 HPAG1_0751 Helicobacter pylori HPAG1 hypothetical protein YP_627492.1 786417 R 357544 CDS YP_627493.1 108563177 4099109 complement(786690..788240) 1 NC_008086.1 hypothetical protein 788240 4099109 HPAG1_0752 Helicobacter pylori HPAG1 hypothetical protein YP_627493.1 786690 R 357544 CDS YP_627494.1 108563178 4099110 complement(788461..789426) 1 NC_008086.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 789426 moaA 4099110 moaA Helicobacter pylori HPAG1 molybdenum cofactor biosynthesis protein A YP_627494.1 788461 R 357544 CDS YP_627495.1 108563179 4099111 789513..790118 1 NC_008086.1 MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein A 790118 4099111 HPAG1_0754 Helicobacter pylori HPAG1 molybdopterin-guanine dinucleotide biosynthesis protein A YP_627495.1 789513 D 357544 CDS YP_627496.1 108563180 4099112 790111..791187 1 NC_008086.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 791187 flhB 4099112 flhB Helicobacter pylori HPAG1 flagellar biosynthesis protein FlhB YP_627496.1 790111 D 357544 CDS YP_627497.1 108563181 4099113 complement(791274..792011) 1 NC_008086.1 hypothetical protein 792011 4099113 HPAG1_0756 Helicobacter pylori HPAG1 hypothetical protein YP_627497.1 791274 R 357544 CDS YP_627498.1 108563182 4099114 complement(792030..793328) 1 NC_008086.1 N-acetylmuramoyl-L-alanine amidase 793328 4099114 HPAG1_0757 Helicobacter pylori HPAG1 N-acetylmuramoyl-L-alanine amidase YP_627498.1 792030 R 357544 CDS YP_627499.1 108563183 4099115 complement(793335..794426) 1 NC_008086.1 hypothetical protein 794426 4099115 HPAG1_0758 Helicobacter pylori HPAG1 hypothetical protein YP_627499.1 793335 R 357544 CDS YP_627500.1 108563184 4099116 complement(794443..795651) 1 NC_008086.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 795651 4099116 HPAG1_0759 Helicobacter pylori HPAG1 tyrosyl-tRNA synthetase YP_627500.1 794443 R 357544 CDS YP_627501.1 108563185 4098888 complement(795675..798002) 1 NC_008086.1 penta-phosphate guanosine-3'-pyrophosphohydrolase 798002 4098888 HPAG1_0760 Helicobacter pylori HPAG1 penta-phosphate guanosine-3'-pyrophosphohydrolase YP_627501.1 795675 R 357544 CDS YP_627502.1 108563186 4098889 complement(797989..798213) 1 NC_008086.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 798213 4098889 HPAG1_0761 Helicobacter pylori HPAG1 DNA-directed RNA polymerase subunit omega YP_627502.1 797989 R 357544 CDS YP_627503.1 108563187 4098890 complement(798256..798978) 1 NC_008086.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 798978 pyrH 4098890 pyrH Helicobacter pylori HPAG1 uridylate kinase YP_627503.1 798256 R 357544 CDS YP_627504.1 108563188 4098891 complement(799087..799770) 1 NC_008086.1 hypothetical protein 799770 4098891 HPAG1_0763 Helicobacter pylori HPAG1 hypothetical protein YP_627504.1 799087 R 357544 CDS YP_627505.1 108563189 4098892 799898..802459 1 NC_008086.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 802459 4098892 HPAG1_0764 Helicobacter pylori HPAG1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_627505.1 799898 D 357544 CDS YP_627506.1 108563190 4098893 802537..802806 1 NC_008086.1 hypothetical protein 802806 4098893 HPAG1_0765 Helicobacter pylori HPAG1 hypothetical protein YP_627506.1 802537 D 357544 CDS YP_627507.1 108563191 4098894 802875..803060 1 NC_008086.1 hypothetical protein 803060 4098894 HPAG1_0766 Helicobacter pylori HPAG1 hypothetical protein YP_627507.1 802875 D 357544 CDS YP_627508.1 108563192 4098895 803088..804377 1 NC_008086.1 hypothetical protein 804377 4098895 HPAG1_0767 Helicobacter pylori HPAG1 hypothetical protein YP_627508.1 803088 D 357544 CDS YP_627509.1 108563193 4098896 804470..805837 1 NC_008086.1 outer membrane protein HofE 805837 4098896 HPAG1_0768 Helicobacter pylori HPAG1 outer membrane protein HofE YP_627509.1 804470 D 357544 CDS YP_627510.1 108563194 4098897 complement(805844..806371) 1 NC_008086.1 hypothetical protein 806371 4098897 HPAG1_0769 Helicobacter pylori HPAG1 hypothetical protein YP_627510.1 805844 R 357544 CDS YP_627511.1 108563195 4098898 806710..806841 1 NC_008086.1 hypothetical protein 806841 4098898 HPAG1_0770 Helicobacter pylori HPAG1 hypothetical protein YP_627511.1 806710 D 357544 CDS YP_627512.1 108563196 4098899 complement(806856..807410) 1 NC_008086.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 807410 lolA 4098899 lolA Helicobacter pylori HPAG1 outer-membrane lipoprotein carrier protein YP_627512.1 806856 R 357544 CDS YP_627513.1 108563197 4098900 807558..810155 1 NC_008086.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 810155 secA 4098900 secA Helicobacter pylori HPAG1 preprotein translocase subunit SecA YP_627513.1 807558 D 357544 CDS YP_627514.1 108563198 4098901 810145..811377 1 NC_008086.1 hypothetical protein 811377 4098901 HPAG1_0773 Helicobacter pylori HPAG1 hypothetical protein YP_627514.1 810145 D 357544 CDS YP_627515.1 108563199 4098902 811657..813156 1 NC_008086.1 outer membrane protein HofF 813156 4098902 HPAG1_0774 Helicobacter pylori HPAG1 outer membrane protein HofF YP_627515.1 811657 D 357544 CDS YP_627516.1 108563200 4098903 complement(813528..814862) 1 NC_008086.1 putative type I restriction-modification enzyme specificity subunit S 814862 4098903 HPAG1_0775 Helicobacter pylori HPAG1 putative type I restriction-modification enzyme specificity subunit S YP_627516.1 813528 R 357544 CDS YP_627517.1 108563201 4098904 complement(814903..816963) 1 NC_008086.1 cadmium-transporting ATPase 816963 4098904 HPAG1_0776 Helicobacter pylori HPAG1 cadmium-transporting ATPase YP_627517.1 814903 R 357544 CDS YP_627518.1 108563202 4098905 complement(816988..818508) 1 NC_008086.1 DNA transformation competence protein 818508 4098905 HPAG1_0777 Helicobacter pylori HPAG1 DNA transformation competence protein YP_627518.1 816988 R 357544 CDS YP_627519.1 108563203 4098906 complement(818514..819038) 1 NC_008086.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 819038 def 4098906 def Helicobacter pylori HPAG1 peptide deformylase YP_627519.1 818514 R 357544 CDS YP_627520.1 108563204 4098907 complement(819043..819633) 1 NC_008086.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 819633 clpP 4098907 clpP Helicobacter pylori HPAG1 ATP-dependent Clp protease proteolytic subunit YP_627520.1 819043 R 357544 CDS YP_627521.1 108563205 4099060 complement(819651..821006) 1 NC_008086.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 821006 tig 4099060 tig Helicobacter pylori HPAG1 trigger factor YP_627521.1 819651 R 357544 CDS YP_627522.1 108563206 4099061 complement(821118..821912) 1 NC_008086.1 outer membrane protein HorG 821912 4099061 HPAG1_0781 Helicobacter pylori HPAG1 outer membrane protein HorG YP_627522.1 821118 R 357544 CDS YP_627523.1 108563207 4099062 complement(821979..822761) 1 NC_008086.1 flagellar sheath adhesin 822761 4099062 HPAG1_0782 Helicobacter pylori HPAG1 flagellar sheath adhesin YP_627523.1 821979 R 357544 CDS YP_627524.1 108563208 4099063 complement(822874..823350) 1 NC_008086.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 823350 moaC 4099063 moaC Helicobacter pylori HPAG1 molybdenum cofactor biosynthesis protein MoaC YP_627524.1 822874 R 357544 CDS YP_627525.1 108563209 4099064 complement(823359..823889) 1 NC_008086.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 823889 mogA 4099064 mogA Helicobacter pylori HPAG1 molybdenum cofactor biosynthesis protein MogA YP_627525.1 823359 R 357544 CDS YP_627526.1 108563210 4099065 complement(823902..824339) 1 NC_008086.1 molybdopterin converting factor, subunit 2 824339 4099065 HPAG1_0785 Helicobacter pylori HPAG1 molybdopterin converting factor, subunit 2 YP_627526.1 823902 R 357544 CDS YP_627527.1 108563211 4099066 complement(824340..824558) 1 NC_008086.1 molybdopterin converting factor, subunit 1 824558 4099066 HPAG1_0786 Helicobacter pylori HPAG1 molybdopterin converting factor, subunit 1 YP_627527.1 824340 R 357544 CDS YP_627528.1 108563212 4099067 complement(824637..825215) 1 NC_008086.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 825215 ribA 4099067 ribA Helicobacter pylori HPAG1 GTP cyclohydrolase II YP_627528.1 824637 R 357544 CDS YP_627529.1 108563213 4099068 complement(825304..826143) 1 NC_008086.1 hypothetical protein 826143 4099068 HPAG1_0788 Helicobacter pylori HPAG1 hypothetical protein YP_627529.1 825304 R 357544 CDS YP_627530.1 108563214 4099069 complement(826230..827264) 1 NC_008086.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 827264 4099069 HPAG1_0789 Helicobacter pylori HPAG1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_627530.1 826230 R 357544 CDS YP_627531.1 108563215 4099070 complement(827458..828342) 1 NC_008086.1 lipooligosaccharide 5G8 epitope biosynthesis-associated protein 828342 4099070 HPAG1_0790 Helicobacter pylori HPAG1 lipooligosaccharide 5G8 epitope biosynthesis-associated protein YP_627531.1 827458 R 357544 CDS YP_627532.1 108563216 4099071 828391..829011 1 NC_008086.1 hypothetical protein 829011 4099071 HPAG1_0791 Helicobacter pylori HPAG1 hypothetical protein YP_627532.1 828391 D 357544 CDS YP_627533.1 108563217 4099072 complement(829014..831392) 1 NC_008086.1 iron(III) dicitrate transport protein 831392 4099072 HPAG1_0792 Helicobacter pylori HPAG1 iron(III) dicitrate transport protein YP_627533.1 829014 R 357544 CDS YP_627534.1 108563218 4099073 complement(831590..831949) 1 NC_008086.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 831949 acpS 4099073 acpS Helicobacter pylori HPAG1 4'-phosphopantetheinyl transferase YP_627534.1 831590 R 357544 CDS YP_627535.1 108563219 4099074 complement(831956..832507) 1 NC_008086.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 832507 fliL 4099074 fliL Helicobacter pylori HPAG1 flagellar basal body-associated protein FliL YP_627535.1 831956 R 357544 CDS YP_627536.1 108563220 4099075 complement(832516..833118) 1 NC_008086.1 hypothetical protein 833118 4099075 HPAG1_0795 Helicobacter pylori HPAG1 hypothetical protein YP_627536.1 832516 R 357544 CDS YP_627537.1 108563221 4099076 complement(833097..833423) 1 NC_008086.1 hypothetical protein 833423 4099076 HPAG1_0796 Helicobacter pylori HPAG1 hypothetical protein YP_627537.1 833097 R 357544 CDS YP_627538.1 108563222 4099077 complement(833888..834898) 1 NC_008086.1 hypothetical protein 834898 4099077 HPAG1_0797 Helicobacter pylori HPAG1 hypothetical protein YP_627538.1 833888 R 357544 CDS YP_627539.1 108563223 4099078 835032..835649 1 NC_008086.1 hypothetical protein 835649 4099078 HPAG1_0798 Helicobacter pylori HPAG1 hypothetical protein YP_627539.1 835032 D 357544 CDS YP_627540.1 108563224 4098633 835650..836417 1 NC_008086.1 thiamine biosynthesis protein 836417 4098633 HPAG1_0799 Helicobacter pylori HPAG1 thiamine biosynthesis protein YP_627540.1 835650 D 357544 CDS YP_627541.1 108563225 4098634 836433..837206 1 NC_008086.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 837206 4098634 HPAG1_0800 Helicobacter pylori HPAG1 flagellar motor protein MotA YP_627541.1 836433 D 357544 CDS YP_627542.1 108563226 4098635 837209..837982 1 NC_008086.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 837982 motB 4098635 motB Helicobacter pylori HPAG1 flagellar motor protein MotB YP_627542.1 837209 D 357544 CDS YP_627543.1 108563227 4098636 837979..838425 1 NC_008086.1 hypothetical protein 838425 4098636 HPAG1_0802 Helicobacter pylori HPAG1 hypothetical protein YP_627543.1 837979 D 357544 CDS YP_627544.1 108563228 4098637 838485..838616 1 NC_008086.1 osmoprotection protein 838616 4098637 HPAG1_0803 Helicobacter pylori HPAG1 osmoprotection protein YP_627544.1 838485 D 357544 CDS YP_627545.1 108563229 4098638 838618..840156 1 NC_008086.1 osmoprotection protein 840156 4098638 HPAG1_0804 Helicobacter pylori HPAG1 osmoprotection protein YP_627545.1 838618 D 357544 CDS YP_627546.1 108563230 4098639 840158..840799 1 NC_008086.1 osmoprotection protein 840799 4098639 HPAG1_0805 Helicobacter pylori HPAG1 osmoprotection protein YP_627546.1 840158 D 357544 CDS YP_627547.1 108563231 4098640 840982..841443 1 NC_008086.1 hypothetical protein 841443 4098640 HPAG1_0806 Helicobacter pylori HPAG1 hypothetical protein YP_627547.1 840982 D 357544 CDS YP_627548.1 108563232 4098641 841444..843228 1 NC_008086.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 843228 uvrC 4098641 uvrC Helicobacter pylori HPAG1 excinuclease ABC subunit C YP_627548.1 841444 D 357544 CDS YP_627549.1 108563233 4098642 843239..844504 1 NC_008086.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 844504 4098642 HPAG1_0808 Helicobacter pylori HPAG1 homoserine dehydrogenase YP_627549.1 843239 D 357544 CDS YP_627550.1 108563234 4098643 844504..844848 1 NC_008086.1 hypothetical protein 844848 4098643 HPAG1_0809 Helicobacter pylori HPAG1 hypothetical protein YP_627550.1 844504 D 357544 CDS YP_627551.1 108563235 4098644 844937..845257 1 NC_008086.1 thioredoxin 845257 4098644 HPAG1_0810 Helicobacter pylori HPAG1 thioredoxin YP_627551.1 844937 D 357544 CDS YP_627552.1 108563236 4098645 845262..846197 1 NC_008086.1 thioredoxin reductase 846197 4098645 HPAG1_0811 Helicobacter pylori HPAG1 thioredoxin reductase YP_627552.1 845262 D 357544 CDS YP_627553.1 108563237 4098646 846407..847228 1 NC_008086.1 beta-1,4-galactosyltransferase 847228 4098646 HPAG1_0812 Helicobacter pylori HPAG1 beta-1,4-galactosyltransferase YP_627553.1 846407 D 357544 CDS YP_627554.1 108563238 4098647 complement(847431..847679) 1 NC_008086.1 RNA binding protein 847679 4098647 HPAG1_0813 Helicobacter pylori HPAG1 RNA binding protein YP_627554.1 847431 R 357544 CDS YP_627555.1 108563239 4098648 complement(848002..848682) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 848682 4098648 HPAG1_0814 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit A YP_627555.1 848002 R 357544 CDS YP_627556.1 108563240 4098649 complement(848804..850249) 1 NC_008086.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 850249 4098649 HPAG1_0815 Helicobacter pylori HPAG1 inosine 5'-monophosphate dehydrogenase YP_627556.1 848804 R 357544 CDS YP_627557.1 108563241 4098650 complement(850259..851620) 1 NC_008086.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 851620 gatA 4098650 gatA Helicobacter pylori HPAG1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_627557.1 850259 R 357544 CDS YP_627558.1 108563242 4098651 complement(851680..852270) 1 NC_008086.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 852270 coaE 4098651 coaE Helicobacter pylori HPAG1 dephospho-CoA kinase YP_627558.1 851680 R 357544 CDS YP_627559.1 108563243 4098652 complement(852272..853060) 1 NC_008086.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 853060 speE 4098652 speE Helicobacter pylori HPAG1 spermidine synthase YP_627559.1 852272 R 357544 CDS YP_627560.1 108563244 4098184 complement(853152..854036) 1 NC_008086.1 hypothetical protein 854036 4098184 HPAG1_0819 Helicobacter pylori HPAG1 hypothetical protein YP_627560.1 853152 R 357544 CDS YP_627561.1 108563245 4098185 854113..855498 1 NC_008086.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 855498 engA 4098185 engA Helicobacter pylori HPAG1 GTP-binding protein EngA YP_627561.1 854113 D 357544 CDS YP_627562.1 108563246 4098186 855640..855924 1 NC_008086.1 DNA-binding protein HU 855924 4098186 HPAG1_0821 Helicobacter pylori HPAG1 DNA-binding protein HU YP_627562.1 855640 D 357544 CDS YP_627563.1 108563247 4098188 856513..857124 1 NC_008086.1 hypothetical protein 857124 4098188 HPAG1_0822 Helicobacter pylori HPAG1 hypothetical protein YP_627563.1 856513 D 357544 CDS YP_627564.1 108563248 4098189 857144..857761 1 NC_008086.1 hypothetical protein 857761 4098189 HPAG1_0823 Helicobacter pylori HPAG1 hypothetical protein YP_627564.1 857144 D 357544 CDS YP_627565.1 108563249 4098190 857758..859521 1 NC_008086.1 outer membrane protein P1 859521 4098190 HPAG1_0824 Helicobacter pylori HPAG1 outer membrane protein P1 YP_627565.1 857758 D 357544 CDS YP_627566.1 108563250 4098191 859527..860510 1 NC_008086.1 UDP-GlcNAc C6 dehydratase 860510 4098191 HPAG1_0825 Helicobacter pylori HPAG1 UDP-GlcNAc C6 dehydratase YP_627566.1 859527 D 357544 CDS YP_627567.1 108563251 4098192 860507..861784 1 NC_008086.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 861784 4098192 HPAG1_0826 Helicobacter pylori HPAG1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_627567.1 860507 D 357544 CDS YP_627568.1 108563252 4098193 861784..862521 1 NC_008086.1 hypothetical protein 862521 4098193 HPAG1_0827 Helicobacter pylori HPAG1 hypothetical protein YP_627568.1 861784 D 357544 CDS YP_627569.1 108563253 4098194 complement(862576..863235) 1 NC_008086.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 863235 thiE 4098194 thiE Helicobacter pylori HPAG1 thiamine-phosphate pyrophosphorylase YP_627569.1 862576 R 357544 CDS YP_627570.1 108563254 4098195 complement(863228..864037) 1 NC_008086.1 thiamine biosynthesis protein 864037 4098195 HPAG1_0829 Helicobacter pylori HPAG1 thiamine biosynthesis protein YP_627570.1 863228 R 357544 CDS YP_627571.1 108563255 4098196 complement(864034..864816) 1 NC_008086.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 864816 4098196 HPAG1_0830 Helicobacter pylori HPAG1 hydroxyethylthiazole kinase YP_627571.1 864034 R 357544 CDS YP_627572.1 108563256 4098197 complement(864901..867912) 1 NC_008086.1 type I restriction enzyme R protein 867912 4098197 HPAG1_0831 Helicobacter pylori HPAG1 type I restriction enzyme R protein YP_627572.1 864901 R 357544 CDS YP_627573.1 108563257 4098198 complement(868049..869287) 1 NC_008086.1 HP0790-like protein 869287 4098198 HPAG1_0832 Helicobacter pylori HPAG1 HP0790-like protein YP_627573.1 868049 R 357544 CDS YP_627574.1 108563258 4098199 complement(869298..870821) 1 NC_008086.1 type I restriction enzyme M protein 870821 4098199 HPAG1_0833 Helicobacter pylori HPAG1 type I restriction enzyme M protein YP_627574.1 869298 R 357544 CDS YP_627575.1 108563259 4098200 871053..871739 1 NC_008086.1 hypothetical protein 871739 4098200 HPAG1_0834 Helicobacter pylori HPAG1 hypothetical protein YP_627575.1 871053 D 357544 CDS YP_627576.1 108563260 4098201 complement(871762..872160) 1 NC_008086.1 hypothetical protein 872160 4098201 HPAG1_0835 Helicobacter pylori HPAG1 hypothetical protein YP_627576.1 871762 R 357544 CDS YP_627577.1 108563261 4097864 complement(872157..872696) 1 NC_008086.1 hypothetical protein 872696 4097864 HPAG1_0836 Helicobacter pylori HPAG1 hypothetical protein YP_627577.1 872157 R 357544 CDS YP_627578.1 108563262 4097865 complement(872693..874294) 1 NC_008086.1 ABC transporter, ATP-binding protein 874294 4097865 HPAG1_0837 Helicobacter pylori HPAG1 ABC transporter, ATP-binding protein YP_627578.1 872693 R 357544 CDS YP_627579.1 108563263 4097866 874492..875469 1 NC_008086.1 guanosine 5'-monophosphate oxidoreductase 875469 4097866 HPAG1_0838 Helicobacter pylori HPAG1 guanosine 5'-monophosphate oxidoreductase YP_627579.1 874492 D 357544 CDS YP_627580.1 108563264 4097867 complement(875466..875663) 1 NC_008086.1 hypothetical protein 875663 4097867 HPAG1_0839 Helicobacter pylori HPAG1 hypothetical protein YP_627580.1 875466 R 357544 CDS YP_627581.1 108563265 4097868 complement(875635..876213) 1 NC_008086.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 876213 4097868 HPAG1_0840 Helicobacter pylori HPAG1 phosphoheptose isomerase YP_627581.1 875635 R 357544 CDS YP_627582.1 108563266 4097869 complement(876206..877597) 1 NC_008086.1 ADP-heptose synthase 877597 4097869 HPAG1_0841 Helicobacter pylori HPAG1 ADP-heptose synthase YP_627582.1 876206 R 357544 CDS YP_627583.1 108563267 4097870 complement(877594..878586) 1 NC_008086.1 ADP-L-glycero-D-mannoheptose-6-epimerase 878586 4097870 HPAG1_0842 Helicobacter pylori HPAG1 ADP-L-glycero-D-mannoheptose-6-epimerase YP_627583.1 877594 R 357544 CDS YP_627584.1 108563268 4097871 complement(878595..879116) 1 NC_008086.1 hypothetical protein 879116 4097871 HPAG1_0843 Helicobacter pylori HPAG1 hypothetical protein YP_627584.1 878595 R 357544 CDS YP_627585.1 108563269 4097872 complement(879106..879846) 1 NC_008086.1 hypothetical protein 879846 4097872 HPAG1_0844 Helicobacter pylori HPAG1 hypothetical protein YP_627585.1 879106 R 357544 CDS YP_627586.1 108563270 4097873 complement(879837..880508) 1 NC_008086.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 880508 4097873 HPAG1_0845 Helicobacter pylori HPAG1 pantothenate kinase YP_627586.1 879837 R 357544 CDS YP_627587.1 108563271 4097874 complement(880513..882189) 1 NC_008086.1 hypothetical protein 882189 4097874 HPAG1_0846 Helicobacter pylori HPAG1 hypothetical protein YP_627587.1 880513 R 357544 CDS YP_627588.1 108563272 4097875 complement(882191..882847) 1 NC_008086.1 hypothetical protein 882847 4097875 HPAG1_0847 Helicobacter pylori HPAG1 hypothetical protein YP_627588.1 882191 R 357544 CDS YP_627589.1 108563273 4097876 complement(882844..883281) 1 NC_008086.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 883281 dut 4097876 dut Helicobacter pylori HPAG1 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_627589.1 882844 R 357544 CDS YP_627590.1 108563274 4097877 complement(883271..883765) 1 NC_008086.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 883765 greA 4097877 greA Helicobacter pylori HPAG1 transcription elongation factor GreA YP_627590.1 883271 R 357544 CDS YP_627591.1 108563275 4097878 complement(883806..884888) 1 NC_008086.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 884888 lpxB 4097878 lpxB Helicobacter pylori HPAG1 ipid-A-disaccharide synthase YP_627591.1 883806 R 357544 CDS YP_627592.1 108563276 4097879 complement(884888..885349) 1 NC_008086.1 hypothetical protein 885349 4097879 HPAG1_0851 Helicobacter pylori HPAG1 hypothetical protein YP_627592.1 884888 R 357544 CDS YP_627593.1 108563277 4097880 complement(885353..885706) 1 NC_008086.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 885706 hypA 4097880 hypA Helicobacter pylori HPAG1 hydrogenase nickel incorporation protein YP_627593.1 885353 R 357544 CDS YP_627594.1 108563278 4097881 complement(885765..887921) 1 NC_008086.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 887921 flgE 4097881 flgE Helicobacter pylori HPAG1 flagellar hook protein FlgE YP_627594.1 885765 R 357544 CDS YP_627595.1 108563279 4097882 complement(888140..888874) 1 NC_008086.1 CDP-diacylglycerol pyrophosphatase 888874 4097882 HPAG1_0854 Helicobacter pylori HPAG1 CDP-diacylglycerol pyrophosphatase YP_627595.1 888140 R 357544 CDS YP_627596.1 108563280 4097883 889234..889563 1 NC_008086.1 alkylphosphonate uptake protein 889563 4097883 HPAG1_0855 Helicobacter pylori HPAG1 alkylphosphonate uptake protein YP_627596.1 889234 D 357544 CDS YP_627597.1 108563281 4097884 complement(889615..889830) 1 NC_008086.1 hypothetical protein 889830 4097884 HPAG1_0856 Helicobacter pylori HPAG1 hypothetical protein YP_627597.1 889615 R 357544 CDS YP_627598.1 108563282 4097885 complement(889912..890787) 1 NC_008086.1 hypothetical protein 890787 4097885 HPAG1_0857 Helicobacter pylori HPAG1 hypothetical protein YP_627598.1 889912 R 357544 CDS YP_627599.1 108563283 4097886 complement(890932..892449) 1 NC_008086.1 catalase 892449 4097886 HPAG1_0858 Helicobacter pylori HPAG1 catalase YP_627599.1 890932 R 357544 CDS YP_627600.1 108563284 4097887 892772..895147 1 NC_008086.1 iron-regulated outer membrane protein 895147 4097887 HPAG1_0859 Helicobacter pylori HPAG1 iron-regulated outer membrane protein YP_627600.1 892772 D 357544 CDS YP_627601.1 108563285 4097888 complement(895148..895621) 1 NC_008086.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 895621 ruvC 4097888 ruvC Helicobacter pylori HPAG1 Holliday junction resolvase YP_627601.1 895148 R 357544 CDS YP_627602.1 108563286 4097889 895752..896483 1 NC_008086.1 hypothetical protein 896483 4097889 HPAG1_0861 Helicobacter pylori HPAG1 hypothetical protein YP_627602.1 895752 D 357544 CDS YP_627603.1 108563287 4097890 complement(897594..898460) 1 NC_008086.1 hypothetical protein 898460 4097890 HPAG1_0862 Helicobacter pylori HPAG1 hypothetical protein YP_627603.1 897594 R 357544 CDS YP_627604.1 108563288 4097891 complement(898513..899064) 1 NC_008086.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 899064 ruvA 4097891 ruvA Helicobacter pylori HPAG1 Holliday junction DNA helicase RuvA YP_627604.1 898513 R 357544 CDS YP_627605.1 108563289 4097892 complement(899090..900934) 1 NC_008086.1 hypothetical protein 900934 4097892 HPAG1_0864 Helicobacter pylori HPAG1 hypothetical protein YP_627605.1 899090 R 357544 CDS YP_627606.1 108563290 4097893 901105..902487 1 NC_008086.1 virulence factor mviN protein 902487 4097893 HPAG1_0865 Helicobacter pylori HPAG1 virulence factor mviN protein YP_627606.1 901105 D 357544 CDS YP_627607.1 108563291 4097894 902488..903885 1 NC_008086.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 903885 cysS 4097894 cysS Helicobacter pylori HPAG1 cysteinyl-tRNA synthetase YP_627607.1 902488 D 357544 CDS YP_627608.1 108563292 4097895 904115..908005 1 NC_008086.1 vacuolating cytotoxin 908005 4097895 HPAG1_0867 Helicobacter pylori HPAG1 vacuolating cytotoxin YP_627608.1 904115 D 357544 CDS YP_627609.1 108563293 4097896 complement(908125..909150) 1 NC_008086.1 lipopolysaccharide 1,2-glycosyltransferase 909150 4097896 HPAG1_0868 Helicobacter pylori HPAG1 lipopolysaccharide 1,2-glycosyltransferase YP_627609.1 908125 R 357544 CDS YP_627610.1 108563294 4097897 complement(909309..910076) 1 NC_008086.1 iron(III) dicitrate ABC transporter, ATP-binding protein 910076 4097897 HPAG1_0869 Helicobacter pylori HPAG1 iron(III) dicitrate ABC transporter, ATP-binding protein YP_627610.1 909309 R 357544 CDS YP_627611.1 108563295 4097898 complement(910076..911056) 1 NC_008086.1 iron(III) dicitrate ABC transporter, permease protein 911056 4097898 HPAG1_0870 Helicobacter pylori HPAG1 iron(III) dicitrate ABC transporter, permease protein YP_627611.1 910076 R 357544 CDS YP_627612.1 108563296 4097899 complement(911049..911903) 1 NC_008086.1 hypothetical protein 911903 4097899 HPAG1_0871 Helicobacter pylori HPAG1 hypothetical protein YP_627612.1 911049 R 357544 CDS YP_627613.1 108563297 4097900 912043..912567 1 NC_008086.1 hypothetical protein 912567 4097900 HPAG1_0872 Helicobacter pylori HPAG1 hypothetical protein YP_627613.1 912043 D 357544 CDS YP_627614.1 108563298 4097901 complement(912673..912939) 1 NC_008086.1 hypothetical protein 912939 4097901 HPAG1_0873 Helicobacter pylori HPAG1 hypothetical protein YP_627614.1 912673 R 357544 CDS YP_627615.1 108563299 4097902 complement(912920..913297) 1 NC_008086.1 hypothetical protein 913297 4097902 HPAG1_0874 Helicobacter pylori HPAG1 hypothetical protein YP_627615.1 912920 R 357544 CDS YP_627616.1 108563300 4099386 913376..913582 1 NC_008086.1 hypothetical protein 913582 4099386 HPAG1_0875 Helicobacter pylori HPAG1 hypothetical protein YP_627616.1 913376 D 357544 CDS YP_627617.1 108563301 4099387 complement(913627..915861) 1 NC_008086.1 outer membrane protein BabA 915861 4099387 HPAG1_0876 Helicobacter pylori HPAG1 outer membrane protein BabA YP_627617.1 913627 R 357544 CDS YP_627618.1 108563302 4099389 916338..917003 1 NC_008086.1 hypothetical protein 917003 4099389 HPAG1_0877 Helicobacter pylori HPAG1 hypothetical protein YP_627618.1 916338 D 357544 CDS YP_627619.1 108563303 4099391 complement(916954..918066) 1 NC_008086.1 hydrogenase expression/formation protein HypD 918066 4099391 HPAG1_0878 Helicobacter pylori HPAG1 hydrogenase expression/formation protein HypD YP_627619.1 916954 R 357544 CDS YP_627620.1 108563304 4099392 complement(918084..918320) 1 NC_008086.1 hydrogenase expression/formation protein HypC 918320 4099392 HPAG1_0879 Helicobacter pylori HPAG1 hydrogenase expression/formation protein HypC YP_627620.1 918084 R 357544 CDS YP_627621.1 108563305 4099393 complement(918320..919048) 1 NC_008086.1 hydrogenase expression/formation protein HypB 919048 4099393 HPAG1_0880 Helicobacter pylori HPAG1 hydrogenase expression/formation protein HypB YP_627621.1 918320 R 357544 CDS YP_627622.1 108563306 4099394 919128..919316 1 NC_008086.1 hypothetical protein 919316 4099394 HPAG1_0881 Helicobacter pylori HPAG1 hypothetical protein YP_627622.1 919128 D 357544 CDS YP_627623.1 108563307 4099395 complement(919291..919590) 1 NC_008086.1 hypothetical protein 919590 4099395 HPAG1_0882 Helicobacter pylori HPAG1 hypothetical protein YP_627623.1 919291 R 357544 CDS YP_627624.1 108563308 4099396 complement(919787..920053) 1 NC_008086.1 acetate kinase 920053 4099396 HPAG1_0883 Helicobacter pylori HPAG1 acetate kinase YP_627624.1 919787 R 357544 CDS YP_627625.1 108563309 4099397 complement(920149..920670) 1 NC_008086.1 acetate kinase 920670 4099397 HPAG1_0884 Helicobacter pylori HPAG1 acetate kinase YP_627625.1 920149 R 357544 CDS YP_627626.1 108563310 4099398 complement(920685..921224) 1 NC_008086.1 phosphotransacetylase 921224 4099398 HPAG1_0885 Helicobacter pylori HPAG1 phosphotransacetylase YP_627626.1 920685 R 357544 CDS YP_627627.1 108563311 4099399 complement(921268..922122) 1 NC_008086.1 phosphotransacetylase 922122 4099399 HPAG1_0886 Helicobacter pylori HPAG1 phosphotransacetylase YP_627627.1 921268 R 357544 CDS YP_627628.1 108563312 4099400 complement(922109..922234) 1 NC_008086.1 phosphotransacetylase 922234 4099400 HPAG1_0887 Helicobacter pylori HPAG1 phosphotransacetylase YP_627628.1 922109 R 357544 CDS YP_627629.1 108563313 4099401 922483..924057 1 NC_008086.1 hypothetical protein 924057 4099401 HPAG1_0888 Helicobacter pylori HPAG1 hypothetical protein YP_627629.1 922483 D 357544 CDS YP_627630.1 108563314 4099402 924108..925091 1 NC_008086.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 925091 flgD 4099402 flgD Helicobacter pylori HPAG1 flagellar basal body rod modification protein YP_627630.1 924108 D 357544 CDS YP_627631.1 108563315 4099403 925088..926905 1 NC_008086.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 926905 flgE 4099403 flgE Helicobacter pylori HPAG1 flagellar hook protein FlgE YP_627631.1 925088 D 357544 CDS YP_627632.1 108563316 4099423 926957..927544 1 NC_008086.1 hypothetical protein 927544 4099423 HPAG1_0891 Helicobacter pylori HPAG1 hypothetical protein YP_627632.1 926957 D 357544 CDS YP_627633.1 108563317 4099424 927554..928705 1 NC_008086.1 adenine specific DNA methyltransferase 928705 4099424 HPAG1_0892 Helicobacter pylori HPAG1 adenine specific DNA methyltransferase YP_627633.1 927554 D 357544 CDS YP_627634.1 108563318 4099425 928709..930736 1 NC_008086.1 rep helicase, single-stranded DNA-dependent ATPase 930736 4099425 HPAG1_0893 Helicobacter pylori HPAG1 rep helicase, single-stranded DNA-dependent ATPase YP_627634.1 928709 D 357544 CDS YP_627635.1 108563319 4099426 complement(931282..931470) 1 NC_008086.1 hypothetical protein 931470 4099426 HPAG1_0894 Helicobacter pylori HPAG1 hypothetical protein YP_627635.1 931282 R 357544 CDS YP_627636.1 108563320 4099427 931575..933128 1 NC_008086.1 outer membrane protein HopC 933128 4099427 HPAG1_0895 Helicobacter pylori HPAG1 outer membrane protein HopC YP_627636.1 931575 D 357544 CDS YP_627637.1 108563321 4099428 933150..934739 1 NC_008086.1 outer membrane protein HopB 934739 4099428 HPAG1_0896 Helicobacter pylori HPAG1 outer membrane protein HopB YP_627637.1 933150 D 357544 CDS YP_627638.1 108563322 4099429 complement(935447..936991) 1 NC_008086.1 outer membrane protein HopG 936991 4099429 HPAG1_0897 Helicobacter pylori HPAG1 outer membrane protein HopG YP_627638.1 935447 R 357544 CDS YP_627639.1 108563323 4099430 complement(937238..939679) 1 NC_008086.1 iron-regulated outer membrane protein 939679 4099430 HPAG1_0898 Helicobacter pylori HPAG1 iron-regulated outer membrane protein YP_627639.1 937238 R 357544 CDS YP_627640.1 108563324 4099431 complement(939938..940369) 1 NC_008086.1 hypothetical protein 940369 4099431 HPAG1_0899 Helicobacter pylori HPAG1 hypothetical protein YP_627640.1 939938 R 357544 CDS YP_627641.1 108563325 4099432 complement(940374..943631) 1 NC_008086.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 943631 carB 4099432 carB Helicobacter pylori HPAG1 carbamoyl phosphate synthase large subunit YP_627641.1 940374 R 357544 CDS YP_627642.1 108563326 4099433 complement(943729..944421) 1 NC_008086.1 hypothetical protein 944421 4099433 HPAG1_0901 Helicobacter pylori HPAG1 hypothetical protein YP_627642.1 943729 R 357544 CDS YP_627643.1 108563327 4099434 944565..945560 1 NC_008086.1 glyceraldehyde-3-phosphate dehydrogenase 945560 4099434 HPAG1_0902 Helicobacter pylori HPAG1 glyceraldehyde-3-phosphate dehydrogenase YP_627643.1 944565 D 357544 CDS YP_627644.1 108563328 4099435 945641..952894 1 NC_008086.1 vacuolating cytotoxin (VacA)-like protein 952894 4099435 HPAG1_0903 Helicobacter pylori HPAG1 vacuolating cytotoxin (VacA)-like protein YP_627644.1 945641 D 357544 CDS YP_627645.1 108563329 4099436 952945..954051 1 NC_008086.1 outer membrane protein HopK 954051 4099436 HPAG1_0904 Helicobacter pylori HPAG1 outer membrane protein HopK YP_627645.1 952945 D 357544 CDS YP_627646.1 108563330 4099437 complement(954119..954325) 1 NC_008086.1 4-oxalocrotonate tautomerase 954325 4099437 HPAG1_0905 Helicobacter pylori HPAG1 4-oxalocrotonate tautomerase YP_627646.1 954119 R 357544 CDS YP_627647.1 108563331 4099438 954472..955053 1 NC_008086.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 955053 recR 4099438 recR Helicobacter pylori HPAG1 recombination protein RecR YP_627647.1 954472 D 357544 CDS YP_627648.1 108563332 4099439 955050..956195 1 NC_008086.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 956195 truD 4099439 truD Helicobacter pylori HPAG1 tRNA pseudouridine synthase D YP_627648.1 955050 D 357544 CDS YP_627649.1 108563333 4099440 956134..957114 1 NC_008086.1 putative metalloprotease; heat shock protein HtpX 957114 4099440 HPAG1_0908 Helicobacter pylori HPAG1 heat shock protein HtpX YP_627649.1 956134 D 357544 CDS YP_627650.1 108563334 4099441 957115..957657 1 NC_008086.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 957657 folE 4099441 folE Helicobacter pylori HPAG1 GTP cyclohydrolase I YP_627650.1 957115 D 357544 CDS YP_627651.1 108563335 4098537 957673..958584 1 NC_008086.1 geranyltranstransferase 958584 4098537 HPAG1_0910 Helicobacter pylori HPAG1 geranyltranstransferase YP_627651.1 957673 D 357544 CDS YP_627652.1 108563336 4098538 958581..959384 1 NC_008086.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 959384 surE 4098538 surE Helicobacter pylori HPAG1 stationary phase survival protein SurE YP_627652.1 958581 D 357544 CDS YP_627653.1 108563337 4098539 959381..960040 1 NC_008086.1 hypothetical protein 960040 4098539 HPAG1_0912 Helicobacter pylori HPAG1 hypothetical protein YP_627653.1 959381 D 357544 CDS YP_627654.1 108563338 4098540 960041..960646 1 NC_008086.1 hypothetical protein 960646 4098540 HPAG1_0913 Helicobacter pylori HPAG1 hypothetical protein YP_627654.1 960041 D 357544 CDS YP_627655.1 108563339 4098541 960643..961398 1 NC_008086.1 hypothetical protein 961398 4098541 HPAG1_0914 Helicobacter pylori HPAG1 hypothetical protein YP_627655.1 960643 D 357544 CDS YP_627656.1 108563340 4098542 961409..961894 1 NC_008086.1 hypothetical protein 961894 4098542 HPAG1_0915 Helicobacter pylori HPAG1 hypothetical protein YP_627656.1 961409 D 357544 CDS YP_627657.1 108563341 4098543 961898..962230 1 NC_008086.1 putative outer membrane protein 962230 4098543 HPAG1_0916 Helicobacter pylori HPAG1 putative outer membrane protein YP_627657.1 961898 D 357544 CDS YP_627658.1 108563342 4098544 complement(962417..963586) 1 NC_008086.1 proline and betaine transporter 963586 4098544 HPAG1_0917 Helicobacter pylori HPAG1 proline and betaine transporter YP_627658.1 962417 R 357544 CDS YP_627659.1 108563343 4098545 complement(964057..964860) 1 NC_008086.1 hypothetical protein 964860 4098545 HPAG1_0918 Helicobacter pylori HPAG1 hypothetical protein YP_627659.1 964057 R 357544 CDS YP_627660.1 108563344 4098546 complement(964836..964979) 1 NC_008086.1 hypothetical protein 964979 4098546 HPAG1_0919 Helicobacter pylori HPAG1 hypothetical protein YP_627660.1 964836 R 357544 CDS YP_627661.1 108563345 4098547 complement(965033..965377) 1 NC_008086.1 hypothetical protein 965377 4098547 HPAG1_0920 Helicobacter pylori HPAG1 hypothetical protein YP_627661.1 965033 R 357544 CDS YP_627662.1 108563346 4098548 complement(965355..965744) 1 NC_008086.1 hypothetical protein 965744 4098548 HPAG1_0921 Helicobacter pylori HPAG1 hypothetical protein YP_627662.1 965355 R 357544 CDS YP_627663.1 108563347 4098549 complement(965813..966526) 1 NC_008086.1 amino acid ABC transporter, permease protein 966526 4098549 HPAG1_0922 Helicobacter pylori HPAG1 amino acid ABC transporter, permease protein YP_627663.1 965813 R 357544 CDS YP_627664.1 108563348 4098550 complement(966510..967280) 1 NC_008086.1 amino acid ABC transporter, periplasmic binding protein 967280 4098550 HPAG1_0923 Helicobacter pylori HPAG1 amino acid ABC transporter, periplasmic binding protein YP_627664.1 966510 R 357544 CDS YP_627665.1 108563349 4098551 complement(967351..968484) 1 NC_008086.1 alanine racemase, biosynthetic 968484 4098551 HPAG1_0924 Helicobacter pylori HPAG1 alanine racemase, biosynthetic YP_627665.1 967351 R 357544 CDS YP_627666.1 108563350 4098552 complement(968491..969843) 1 NC_008086.1 D-alanine glycine permease 969843 4098552 HPAG1_0925 Helicobacter pylori HPAG1 D-alanine glycine permease YP_627666.1 968491 R 357544 CDS YP_627667.1 108563351 4098553 complement(969884..971116) 1 NC_008086.1 D-amino acid dehydrogenase 971116 4098553 HPAG1_0926 Helicobacter pylori HPAG1 D-amino acid dehydrogenase YP_627667.1 969884 R 357544 CDS YP_627668.1 108563352 4098554 complement(971138..971515) 1 NC_008086.1 hypothetical protein 971515 4098554 HPAG1_0927 Helicobacter pylori HPAG1 hypothetical protein YP_627668.1 971138 R 357544 CDS YP_627669.1 108563353 4097943 complement(971693..971905) 1 NC_008086.1 hypothetical protein 971905 4097943 HPAG1_0928 Helicobacter pylori HPAG1 hypothetical protein YP_627669.1 971693 R 357544 CDS YP_627670.1 108563354 4097944 971936..972235 1 NC_008086.1 protein tRNA-associated locus protein 972235 4097944 HPAG1_0929 Helicobacter pylori HPAG1 protein tRNA-associated locus protein YP_627670.1 971936 D 357544 CDS YP_627671.1 108563355 4097948 972795..974285 1 NC_008086.1 hypothetical protein 974285 4097948 HPAG1_0930 Helicobacter pylori HPAG1 hypothetical protein YP_627671.1 972795 D 357544 CDS YP_627672.1 108563356 4097949 974602..974964 1 NC_008086.1 hypothetical protein 974964 4097949 HPAG1_0931 Helicobacter pylori HPAG1 hypothetical protein YP_627672.1 974602 D 357544 CDS YP_627673.1 108563357 4097950 complement(975377..976390) 1 NC_008086.1 hypothetical protein 976390 4097950 HPAG1_0932 Helicobacter pylori HPAG1 hypothetical protein YP_627673.1 975377 R 357544 CDS YP_627674.1 108563358 4097951 complement(976400..976852) 1 NC_008086.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 976852 4097951 HPAG1_0933 Helicobacter pylori HPAG1 rRNA large subunit methyltransferase YP_627674.1 976400 R 357544 CDS YP_627675.1 108563359 4097952 complement(976866..977735) 1 NC_008086.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 977735 4097952 HPAG1_0934 Helicobacter pylori HPAG1 acetyl-CoA carboxylase subunit beta YP_627675.1 976866 R 357544 CDS YP_627676.1 108563360 4097953 977816..978430 1 NC_008086.1 putative recombination protein RecO 978430 4097953 HPAG1_0935 Helicobacter pylori HPAG1 putative recombination protein RecO YP_627676.1 977816 D 357544 CDS YP_627677.1 108563361 4097954 978441..979097 1 NC_008086.1 hypothetical protein 979097 4097954 HPAG1_0936 Helicobacter pylori HPAG1 hypothetical protein YP_627677.1 978441 D 357544 CDS YP_627678.1 108563362 4097955 complement(979100..979666) 1 NC_008086.1 hypothetical protein 979666 4097955 HPAG1_0937 Helicobacter pylori HPAG1 hypothetical protein YP_627678.1 979100 R 357544 CDS YP_627679.1 108563363 4097956 complement(979731..980363) 1 NC_008086.1 oxygen-insensitive NADPH nitroreductase 980363 4097956 HPAG1_0938 Helicobacter pylori HPAG1 oxygen-insensitive NADPH nitroreductase YP_627679.1 979731 R 357544 CDS YP_627680.1 108563364 4097957 complement(980374..981213) 1 NC_008086.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 981213 4097957 HPAG1_0939 Helicobacter pylori HPAG1 prolipoprotein diacylglyceryl transferase YP_627680.1 980374 R 357544 CDS YP_627681.1 108563365 4097958 complement(981223..981951) 1 NC_008086.1 hypothetical protein 981951 4097958 HPAG1_0940 Helicobacter pylori HPAG1 hypothetical protein YP_627681.1 981223 R 357544 CDS YP_627682.1 108563366 4099301 complement(981970..983151) 1 NC_008086.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 983151 4099301 HPAG1_0941 Helicobacter pylori HPAG1 3-deoxy-D-manno-octulosonic-acid transferase YP_627682.1 981970 R 357544 CDS YP_627683.1 108563367 4099302 complement(983152..983916) 1 NC_008086.1 hypothetical protein 983916 4099302 HPAG1_0942 Helicobacter pylori HPAG1 hypothetical protein YP_627683.1 983152 R 357544 CDS YP_627684.1 108563368 4099303 complement(983926..984657) 1 NC_008086.1 hypothetical protein 984657 4099303 HPAG1_0943 Helicobacter pylori HPAG1 hypothetical protein YP_627684.1 983926 R 357544 CDS YP_627685.1 108563369 4099304 complement(984659..985555) 1 NC_008086.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 985555 glyQ 4099304 glyQ Helicobacter pylori HPAG1 glycyl-tRNA synthetase subunit alpha YP_627685.1 984659 R 357544 CDS YP_627686.1 108563370 4099305 complement(985569..986507) 1 NC_008086.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 986507 gpsA 4099305 gpsA Helicobacter pylori HPAG1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_627686.1 985569 R 357544 CDS YP_627687.1 108563371 4099306 complement(986648..988231) 1 NC_008086.1 hypothetical protein 988231 4099306 HPAG1_0946 Helicobacter pylori HPAG1 hypothetical protein YP_627687.1 986648 R 357544 CDS YP_627688.1 108563372 4099307 complement(988228..990564) 1 NC_008086.1 hypothetical protein 990564 4099307 HPAG1_0947 Helicobacter pylori HPAG1 hypothetical protein YP_627688.1 988228 R 357544 CDS YP_627689.1 108563373 4099308 complement(990561..992087) 1 NC_008086.1 hypothetical protein 992087 4099308 HPAG1_0948 Helicobacter pylori HPAG1 hypothetical protein YP_627689.1 990561 R 357544 CDS YP_627690.1 108563374 4099309 complement(992653..992934) 1 NC_008086.1 hypothetical protein 992934 4099309 HPAG1_0949 Helicobacter pylori HPAG1 hypothetical protein YP_627690.1 992653 R 357544 CDS YP_627691.1 108563375 4099310 complement(992950..996009) 1 NC_008086.1 cobalt-zinc-cadmium resistance protein 996009 4099310 HPAG1_0950 Helicobacter pylori HPAG1 cobalt-zinc-cadmium resistance protein YP_627691.1 992950 R 357544 CDS YP_627692.1 108563376 4099311 complement(996009..997088) 1 NC_008086.1 cobalt-zinc-cadmium resistance protein 997088 4099311 HPAG1_0951 Helicobacter pylori HPAG1 cobalt-zinc-cadmium resistance protein YP_627692.1 996009 R 357544 CDS YP_627693.1 108563377 4099312 complement(997085..998380) 1 NC_008086.1 hypothetical protein 998380 4099312 HPAG1_0952 Helicobacter pylori HPAG1 hypothetical protein YP_627693.1 997085 R 357544 CDS YP_627694.1 108563378 4099313 complement(998370..1000475) 1 NC_008086.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1000475 glyS 4099313 glyS Helicobacter pylori HPAG1 glycyl-tRNA synthetase subunit beta YP_627694.1 998370 R 357544 CDS YP_627695.1 108563379 4099314 1000587..1001672 1 NC_008086.1 hypothetical protein 1001672 4099314 HPAG1_0954 Helicobacter pylori HPAG1 hypothetical protein YP_627695.1 1000587 D 357544 CDS YP_627696.1 108563380 4099315 1001685..1003160 1 NC_008086.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1003160 4099315 HPAG1_0955 Helicobacter pylori HPAG1 phosphoglyceromutase YP_627696.1 1001685 D 357544 CDS YP_627697.1 108563381 4099316 1003175..1003456 1 NC_008086.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1003456 gatC 4099316 gatC Helicobacter pylori HPAG1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_627697.1 1003175 D 357544 CDS YP_627698.1 108563382 4099317 complement(1003576..1004886) 1 NC_008086.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 1004886 4099317 HPAG1_0957 Helicobacter pylori HPAG1 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_627698.1 1003576 R 357544 CDS YP_627699.1 108563383 4099318 1005016..1006479 1 NC_008086.1 peptidyl-prolyl cis-trans isomerase D 1006479 4099318 HPAG1_0958 Helicobacter pylori HPAG1 peptidyl-prolyl cis-trans isomerase D YP_627699.1 1005016 D 357544 CDS YP_627700.1 108563384 4099319 1006495..1007973 1 NC_008086.1 cell division protein 1007973 4099319 HPAG1_0959 Helicobacter pylori HPAG1 cell division protein YP_627700.1 1006495 D 357544 CDS YP_627701.1 108563385 4099320 1008104..1009261 1 NC_008086.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1009261 4099320 HPAG1_0960 Helicobacter pylori HPAG1 cell division protein FtsZ YP_627701.1 1008104 D 357544 CDS YP_627702.1 108563386 4098408 complement(1009714..1009818) 1 NC_008086.1 hypothetical protein 1009818 4098408 HPAG1_0961 Helicobacter pylori HPAG1 hypothetical protein YP_627702.1 1009714 R 357544 CDS YP_627703.1 108563387 4098409 complement(1009929..1010117) 1 NC_008086.1 hypothetical protein 1010117 4098409 HPAG1_0962 Helicobacter pylori HPAG1 hypothetical protein YP_627703.1 1009929 R 357544 CDS YP_627704.1 108563388 4098410 complement(1010280..1011104) 1 NC_008086.1 hypothetical protein 1011104 4098410 HPAG1_0963 Helicobacter pylori HPAG1 hypothetical protein YP_627704.1 1010280 R 357544 CDS YP_627705.1 108563389 4098411 complement(1011239..1011430) 1 NC_008086.1 hypothetical protein 1011430 4098411 HPAG1_0964 Helicobacter pylori HPAG1 hypothetical protein YP_627705.1 1011239 R 357544 CDS YP_627706.1 108563390 4098412 complement(1012207..1012578) 1 NC_008086.1 hypothetical protein 1012578 4098412 HPAG1_0965 Helicobacter pylori HPAG1 hypothetical protein YP_627706.1 1012207 R 357544 CDS YP_627707.1 108563391 4098413 complement(1012641..1012961) 1 NC_008086.1 hypothetical protein 1012961 4098413 HPAG1_0966 Helicobacter pylori HPAG1 hypothetical protein YP_627707.1 1012641 R 357544 CDS YP_627708.1 108563392 4098416 1017340..1017606 1 NC_008086.1 hypothetical protein 1017606 4098416 HPAG1_0967 Helicobacter pylori HPAG1 hypothetical protein YP_627708.1 1017340 D 357544 CDS YP_627709.1 108563393 4098417 1017993..1018433 1 NC_008086.1 hypothetical protein 1018433 4098417 HPAG1_0968 Helicobacter pylori HPAG1 hypothetical protein YP_627709.1 1017993 D 357544 CDS YP_627710.1 108563394 4098418 1018474..1020303 1 NC_008086.1 hypothetical protein 1020303 4098418 HPAG1_0969 Helicobacter pylori HPAG1 hypothetical protein YP_627710.1 1018474 D 357544 CDS YP_627711.1 108563395 4098419 1020454..1020699 1 NC_008086.1 hypothetical protein 1020699 4098419 HPAG1_0970 Helicobacter pylori HPAG1 hypothetical protein YP_627711.1 1020454 D 357544 CDS YP_627712.1 108563396 4098420 1020701..1021363 1 NC_008086.1 hypothetical protein 1021363 4098420 HPAG1_0971 Helicobacter pylori HPAG1 hypothetical protein YP_627712.1 1020701 D 357544 CDS YP_627713.1 108563397 4098421 complement(1021469..1023316) 1 NC_008086.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1023316 4098421 HPAG1_0972 Helicobacter pylori HPAG1 arginine decarboxylase YP_627713.1 1021469 R 357544 CDS YP_627714.1 108563398 4098422 complement(1023331..1024500) 1 NC_008086.1 type 1 capsular polysaccharide biosynthesis protein J 1024500 4098422 HPAG1_0973 Helicobacter pylori HPAG1 type 1 capsular polysaccharide biosynthesis protein J YP_627714.1 1023331 R 357544 CDS YP_627715.1 108563399 4098423 complement(1024505..1024933) 1 NC_008086.1 hypothetical protein 1024933 4098423 HPAG1_0974 Helicobacter pylori HPAG1 hypothetical protein YP_627715.1 1024505 R 357544 CDS YP_627716.1 108563400 4098424 complement(1024950..1025735) 1 NC_008086.1 hypothetical protein 1025735 4098424 HPAG1_0975 Helicobacter pylori HPAG1 hypothetical protein YP_627716.1 1024950 R 357544 CDS YP_627717.1 108563401 4098075 complement(1025739..1026758) 1 NC_008086.1 hypothetical protein 1026758 4098075 HPAG1_0976 Helicobacter pylori HPAG1 hypothetical protein YP_627717.1 1025739 R 357544 CDS YP_627718.1 108563402 4098076 complement(1026759..1028690) 1 NC_008086.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1028690 4098076 HPAG1_0977 Helicobacter pylori HPAG1 methionyl-tRNA synthetase YP_627718.1 1026759 R 357544 CDS YP_627719.1 108563403 4098077 1028860..1030029 1 NC_008086.1 cyclopropane fatty acid synthase 1030029 4098077 HPAG1_0978 Helicobacter pylori HPAG1 cyclopropane fatty acid synthase YP_627719.1 1028860 D 357544 CDS YP_627720.1 108563404 4098078 complement(1030032..1031903) 1 NC_008086.1 hypothetical protein 1031903 4098078 HPAG1_0979 Helicobacter pylori HPAG1 hypothetical protein YP_627720.1 1030032 R 357544 CDS YP_627721.1 108563405 4098079 complement(1032378..1032476) 1 NC_008086.1 hypothetical protein 1032476 4098079 HPAG1_0980 Helicobacter pylori HPAG1 hypothetical protein YP_627721.1 1032378 R 357544 CDS YP_627723.1 108563407 4098085 complement(1033136..1033885) 1 NC_008086.1 putative neuraminyllactose-binding hemagglutinin-like protein 1033885 4098085 HPAG1_0982 Helicobacter pylori HPAG1 putative neuraminyllactose-binding hemagglutinin-like protein YP_627723.1 1033136 R 357544 CDS YP_627724.1 108563408 4098086 complement(1033970..1035496) 1 NC_008086.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1035496 guaA 4098086 guaA Helicobacter pylori HPAG1 GMP synthase YP_627724.1 1033970 R 357544 CDS YP_627725.1 108563409 4098087 complement(1035507..1035995) 1 NC_008086.1 hypothetical protein 1035995 4098087 HPAG1_0984 Helicobacter pylori HPAG1 hypothetical protein YP_627725.1 1035507 R 357544 CDS YP_627726.1 108563410 4098088 complement(1036156..1038546) 1 NC_008086.1 biotin sulfoxide reductase 1038546 4098088 HPAG1_0985 Helicobacter pylori HPAG1 biotin sulfoxide reductase YP_627726.1 1036156 R 357544 CDS YP_627727.1 108563411 4098089 complement(1038650..1039240) 1 NC_008086.1 hypothetical protein 1039240 4098089 HPAG1_0986 Helicobacter pylori HPAG1 hypothetical protein YP_627727.1 1038650 R 357544 CDS YP_627728.1 108563412 4099241 complement(1039266..1040588) 1 NC_008086.1 nifS-like protein 1040588 4099241 HPAG1_0987 Helicobacter pylori HPAG1 nifS-like protein YP_627728.1 1039266 R 357544 CDS YP_627729.1 108563413 4099242 complement(1040607..1040921) 1 NC_008086.1 ADP hydrolase 1040921 4099242 HPAG1_0988 Helicobacter pylori HPAG1 ADP hydrolase YP_627729.1 1040607 R 357544 CDS YP_627730.1 108563414 4099243 1041003..1041989 1 NC_008086.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1041989 pheS 4099243 pheS Helicobacter pylori HPAG1 phenylalanyl-tRNA synthetase subunit alpha YP_627730.1 1041003 D 357544 CDS YP_627731.1 108563415 4099244 1041989..1044283 1 NC_008086.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1044283 pheT 4099244 pheT Helicobacter pylori HPAG1 phenylalanyl-tRNA synthetase subunit beta YP_627731.1 1041989 D 357544 CDS YP_627732.1 108563416 4099245 1044287..1045576 1 NC_008086.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1045576 4099245 HPAG1_0991 Helicobacter pylori HPAG1 3-phosphoshikimate 1-carboxyvinyltransferase YP_627732.1 1044287 D 357544 CDS YP_627733.1 108563417 4099246 1045566..1046390 1 NC_008086.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1046390 ispH 4099246 ispH Helicobacter pylori HPAG1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_627733.1 1045566 D 357544 CDS YP_627734.1 108563418 4099247 1046511..1048181 1 NC_008086.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1048181 rpsA 4099247 rpsA Helicobacter pylori HPAG1 30S ribosomal protein S1 YP_627734.1 1046511 D 357544 CDS YP_627735.1 108563419 4099248 1048210..1048758 1 NC_008086.1 hypothetical protein 1048758 4099248 HPAG1_0994 Helicobacter pylori HPAG1 hypothetical protein YP_627735.1 1048210 D 357544 CDS YP_627736.1 108563420 4099249 1048774..1050348 1 NC_008086.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1050348 4099249 HPAG1_0995 Helicobacter pylori HPAG1 D-3-phosphoglycerate dehydrogenase YP_627736.1 1048774 D 357544 CDS YP_627737.1 108563421 4099250 1050358..1052208 1 NC_008086.1 hypothetical protein 1052208 4099250 HPAG1_0996 Helicobacter pylori HPAG1 hypothetical protein YP_627737.1 1050358 D 357544 CDS YP_627738.1 108563422 4099251 1052232..1052900 1 NC_008086.1 hypothetical protein 1052900 4099251 HPAG1_0997 Helicobacter pylori HPAG1 hypothetical protein YP_627738.1 1052232 D 357544 CDS YP_627739.1 108563423 4099252 1052902..1053660 1 NC_008086.1 hypothetical protein 1053660 4099252 HPAG1_0998 Helicobacter pylori HPAG1 hypothetical protein YP_627739.1 1052902 D 357544 CDS YP_627740.1 108563424 4099253 1053664..1054599 1 NC_008086.1 CheA-MCP interaction modulator 1054599 4099253 HPAG1_0999 Helicobacter pylori HPAG1 CheA-MCP interaction modulator YP_627740.1 1053664 D 357544 CDS YP_627741.1 108563425 4099254 1054656..1057064 1 NC_008086.1 autophosphorylating histidine kinase 1057064 4099254 HPAG1_1000 Helicobacter pylori HPAG1 autophosphorylating histidine kinase YP_627741.1 1054656 D 357544 CDS YP_627742.1 108563426 4099255 1057061..1057558 1 NC_008086.1 CheA-MCP coupling protein 1057558 4099255 HPAG1_1001 Helicobacter pylori HPAG1 CheA-MCP coupling protein YP_627742.1 1057061 D 357544 CDS YP_627743.1 108563427 4099256 complement(1057818..1058318) 1 NC_008086.1 adhesin-thiol peroxidase 1058318 4099256 HPAG1_1002 Helicobacter pylori HPAG1 adhesin-thiol peroxidase YP_627743.1 1057818 R 357544 CDS YP_627744.1 108563428 4099257 1058541..1059182 1 NC_008086.1 iron-dependent superoxide dismutase 1059182 4099257 HPAG1_1003 Helicobacter pylori HPAG1 iron-dependent superoxide dismutase YP_627744.1 1058541 D 357544 CDS YP_627745.1 108563429 4099258 1059235..1059954 1 NC_008086.1 hypothetical protein 1059954 4099258 HPAG1_1004 Helicobacter pylori HPAG1 hypothetical protein YP_627745.1 1059235 D 357544 CDS YP_627746.1 108563430 4099259 complement(1059987..1061846) 1 NC_008086.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1061846 4099259 HPAG1_1005 Helicobacter pylori HPAG1 primosome assembly protein PriA YP_627746.1 1059987 R 357544 CDS YP_627747.1 108563431 4099260 complement(1061831..1062067) 1 NC_008086.1 hypothetical protein 1062067 4099260 HPAG1_1006 Helicobacter pylori HPAG1 hypothetical protein YP_627747.1 1061831 R 357544 CDS YP_627748.1 108563432 4099003 complement(1062080..1062307) 1 NC_008086.1 hypothetical protein 1062307 4099003 HPAG1_1007 Helicobacter pylori HPAG1 hypothetical protein YP_627748.1 1062080 R 357544 CDS YP_627749.1 108563433 4099004 1062489..1063235 1 NC_008086.1 hypothetical protein 1063235 4099004 HPAG1_1008 Helicobacter pylori HPAG1 hypothetical protein YP_627749.1 1062489 D 357544 CDS YP_627750.1 108563434 4099005 complement(1063243..1063773) 1 NC_008086.1 hypothetical protein 1063773 4099005 HPAG1_1009 Helicobacter pylori HPAG1 hypothetical protein YP_627750.1 1063243 R 357544 CDS YP_627751.1 108563435 4099006 1063947..1065170 1 NC_008086.1 zinc-metalloprotease 1065170 4099006 HPAG1_1010 Helicobacter pylori HPAG1 zinc-metalloprotease YP_627751.1 1063947 D 357544 CDS YP_627752.1 108563436 4099007 1065167..1065991 1 NC_008086.1 S-adenosylmethionine-dependent methyltransferase 1065991 4099007 HPAG1_1011 Helicobacter pylori HPAG1 S-adenosylmethionine-dependent methyltransferase YP_627752.1 1065167 D 357544 CDS YP_627753.1 108563437 4099008 1066063..1067409 1 NC_008086.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1067409 4099008 HPAG1_1012 Helicobacter pylori HPAG1 glutamate dehydrogenase YP_627753.1 1066063 D 357544 CDS YP_627754.1 108563438 4099009 complement(1067423..1068799) 1 NC_008086.1 alpha 1,3-fucosyltransferase 1068799 4099009 HPAG1_1013 Helicobacter pylori HPAG1 alpha 1,3-fucosyltransferase YP_627754.1 1067423 R 357544 CDS YP_627755.1 108563439 4099010 complement(1068809..1071619) 1 NC_008086.1 cytochrome c-type biogenesis protein 1071619 4099010 HPAG1_1014 Helicobacter pylori HPAG1 cytochrome c-type biogenesis protein YP_627755.1 1068809 R 357544 CDS YP_627756.1 108563440 4099011 complement(1071606..1072292) 1 NC_008086.1 thiol:disulfide interchange protein 1072292 4099011 HPAG1_1015 Helicobacter pylori HPAG1 thiol:disulfide interchange protein YP_627756.1 1071606 R 357544 CDS YP_627757.1 108563441 4099012 complement(1072366..1073373) 1 NC_008086.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1073373 hemH 4099012 hemH Helicobacter pylori HPAG1 ferrochelatase YP_627757.1 1072366 R 357544 CDS YP_627758.1 108563442 4099013 1073429..1073860 1 NC_008086.1 hypothetical protein 1073860 4099013 HPAG1_1017 Helicobacter pylori HPAG1 hypothetical protein YP_627758.1 1073429 D 357544 CDS YP_627759.1 108563443 4099014 1073861..1074541 1 NC_008086.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1074541 4099014 HPAG1_1018 Helicobacter pylori HPAG1 16S ribosomal RNA methyltransferase RsmE YP_627759.1 1073861 D 357544 CDS YP_627760.1 108563444 4099015 complement(1074565..1076667) 1 NC_008086.1 outer membrane protein 1076667 4099015 HPAG1_1019 Helicobacter pylori HPAG1 outer membrane protein YP_627760.1 1074565 R 357544 CDS YP_627761.1 108563445 4099016 complement(1076827..1077399) 1 NC_008086.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1077399 dcd 4099016 dcd Helicobacter pylori HPAG1 deoxycytidine triphosphate deaminase YP_627761.1 1076827 R 357544 CDS YP_627762.1 108563446 4099017 1077517..1077999 1 NC_008086.1 biotin carboxyl carrier protein 1077999 4099017 HPAG1_1021 Helicobacter pylori HPAG1 biotin carboxyl carrier protein YP_627762.1 1077517 D 357544 CDS YP_627763.1 108563447 4099018 1078005..1079381 1 NC_008086.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1079381 4099018 HPAG1_1022 Helicobacter pylori HPAG1 biotin carboxylase YP_627763.1 1078005 D 357544 CDS YP_627764.1 108563448 4099019 1079474..1080295 1 NC_008086.1 putative type II DNA modification enzyme 1080295 4099019 HPAG1_1023 Helicobacter pylori HPAG1 putative type II DNA modification enzyme YP_627764.1 1079474 D 357544 CDS YP_627765.1 108563449 4099020 1080265..1080435 1 NC_008086.1 putative type II DNA modification enzyme 1080435 4099020 HPAG1_1024 Helicobacter pylori HPAG1 putative type II DNA modification enzyme YP_627765.1 1080265 D 357544 CDS YP_627766.1 108563450 4099021 1080435..1080743 1 NC_008086.1 hypothetical protein 1080743 4099021 HPAG1_1025 Helicobacter pylori HPAG1 hypothetical protein YP_627766.1 1080435 D 357544 CDS YP_627767.1 108563451 4098318 1080748..1080984 1 NC_008086.1 hypothetical protein 1080984 4098318 HPAG1_1026 Helicobacter pylori HPAG1 hypothetical protein YP_627767.1 1080748 D 357544 CDS YP_627768.1 108563452 4098319 1081077..1081670 1 NC_008086.1 hypothetical protein 1081670 4098319 HPAG1_1027 Helicobacter pylori HPAG1 hypothetical protein YP_627768.1 1081077 D 357544 CDS YP_627769.1 108563453 4098320 1081667..1082803 1 NC_008086.1 spore coat polysaccharide biosynthesis protein C 1082803 4098320 HPAG1_1028 Helicobacter pylori HPAG1 spore coat polysaccharide biosynthesis protein C YP_627769.1 1081667 D 357544 CDS YP_627770.1 108563454 4098322 1083113..1084138 1 NC_008086.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1084138 nrdF 4098322 nrdF Helicobacter pylori HPAG1 ribonucleotide-diphosphate reductase subunit beta YP_627770.1 1083113 D 357544 CDS YP_627771.1 108563455 4098323 1084148..1084777 1 NC_008086.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1084777 pcm 4098323 pcm Helicobacter pylori HPAG1 protein-L-isoaspartate O-methyltransferase YP_627771.1 1084148 D 357544 CDS YP_627772.1 108563456 4098324 1084788..1085825 1 NC_008086.1 hypothetical protein 1085825 4098324 HPAG1_1031 Helicobacter pylori HPAG1 hypothetical protein YP_627772.1 1084788 D 357544 CDS YP_627773.1 108563457 4098325 1085826..1086554 1 NC_008086.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1086554 truA 4098325 truA Helicobacter pylori HPAG1 tRNA pseudouridine synthase A YP_627773.1 1085826 D 357544 CDS YP_627774.1 108563458 4098326 complement(1086548..1087582) 1 NC_008086.1 UDP-glucose 4-epimerase 1087582 4098326 HPAG1_1033 Helicobacter pylori HPAG1 UDP-glucose 4-epimerase YP_627774.1 1086548 R 357544 CDS YP_627775.1 108563459 4098329 1088114..1089649 1 NC_008086.1 putative outer membrane protein 1089649 4098329 HPAG1_1034 Helicobacter pylori HPAG1 putative outer membrane protein YP_627775.1 1088114 D 357544 CDS YP_627776.1 108563460 4098330 1089671..1090423 1 NC_008086.1 short chain alcohol dehydrogenase 1090423 4098330 HPAG1_1035 Helicobacter pylori HPAG1 short chain alcohol dehydrogenase YP_627776.1 1089671 D 357544 CDS YP_627777.1 108563461 4098331 complement(1090636..1091508) 1 NC_008086.1 cysteine-rich protein C 1091508 4098331 HPAG1_1036 Helicobacter pylori HPAG1 cysteine-rich protein C YP_627777.1 1090636 R 357544 CDS YP_627778.1 108563462 4098332 complement(1091578..1092204) 1 NC_008086.1 2-keto-3-deoxy-6-phosphogluconate aldolase 1092204 4098332 HPAG1_1037 Helicobacter pylori HPAG1 2-keto-3-deoxy-6-phosphogluconate aldolase YP_627778.1 1091578 R 357544 CDS YP_627779.1 108563463 4098333 complement(1092223..1094049) 1 NC_008086.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1094049 4098333 HPAG1_1038 Helicobacter pylori HPAG1 phosphogluconate dehydratase YP_627779.1 1092223 R 357544 CDS YP_627780.1 108563464 4099281 1094115..1095392 1 NC_008086.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1095392 4099281 HPAG1_1039 Helicobacter pylori HPAG1 glucose-6-phosphate 1-dehydrogenase YP_627780.1 1094115 D 357544 CDS YP_627781.1 108563465 4099282 1095403..1096086 1 NC_008086.1 glucose-6-phosphate 1-dehydrogenase 1096086 4099282 HPAG1_1040 Helicobacter pylori HPAG1 glucose-6-phosphate 1-dehydrogenase YP_627781.1 1095403 D 357544 CDS YP_627782.1 108563466 4099283 1096073..1097083 1 NC_008086.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1097083 glk 4099283 glk Helicobacter pylori HPAG1 glucokinase YP_627782.1 1096073 D 357544 CDS YP_627783.1 108563467 4099284 1097253..1098299 1 NC_008086.1 mannitol dehydrogenase 1098299 4099284 HPAG1_1042 Helicobacter pylori HPAG1 mannitol dehydrogenase YP_627783.1 1097253 D 357544 CDS YP_627784.1 108563468 4099285 complement(1098311..1099477) 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 1099477 4099285 HPAG1_1043 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627784.1 1098311 R 357544 CDS YP_627785.1 108563469 4099286 complement(1099615..1100811) 1 NC_008086.1 putative lipopolysaccharide biosynthesis protein 1100811 4099286 HPAG1_1044 Helicobacter pylori HPAG1 putative lipopolysaccharide biosynthesis protein YP_627785.1 1099615 R 357544 CDS YP_627786.1 108563470 4099287 1100986..1102293 1 NC_008086.1 hypothetical protein 1102293 4099287 HPAG1_1045 Helicobacter pylori HPAG1 hypothetical protein YP_627786.1 1100986 D 357544 CDS YP_627787.1 108563471 4099288 complement(1102300..1102992) 1 NC_008086.1 outer membrane protein HorH 1102992 4099288 HPAG1_1046 Helicobacter pylori HPAG1 outer membrane protein HorH YP_627787.1 1102300 R 357544 CDS YP_627788.1 108563472 4099289 1103242..1103802 1 NC_008086.1 pyruvate flavodoxin oxidoreductase subunit gamma 1103802 4099289 HPAG1_1047 Helicobacter pylori HPAG1 pyruvate flavodoxin oxidoreductase subunit gamma YP_627788.1 1103242 D 357544 CDS YP_627789.1 108563473 4099290 1103818..1104210 1 NC_008086.1 pyruvate flavodoxin oxidoreductase subunit delta 1104210 porD 4099290 porD Helicobacter pylori HPAG1 pyruvate flavodoxin oxidoreductase subunit delta YP_627789.1 1103818 D 357544 CDS YP_627790.1 108563474 4099291 1104220..1105443 1 NC_008086.1 pyruvate flavodoxin oxidoreductase subunit alpha 1105443 porA 4099291 porA Helicobacter pylori HPAG1 pyruvate flavodoxin oxidoreductase subunit alpha YP_627790.1 1104220 D 357544 CDS YP_627791.1 108563475 4099292 1105456..1106400 1 NC_008086.1 ferrodoxin oxidoreductase beta subunit 1106400 4099292 HPAG1_1050 Helicobacter pylori HPAG1 ferrodoxin oxidoreductase beta subunit YP_627791.1 1105456 D 357544 CDS YP_627792.1 108563476 4099293 1106510..1107832 1 NC_008086.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1107832 4099293 HPAG1_1051 Helicobacter pylori HPAG1 adenylosuccinate lyase YP_627792.1 1106510 D 357544 CDS YP_627793.1 108563477 4099294 1107897..1108730 1 NC_008086.1 outer membrane protein Horl 1108730 4099294 HPAG1_1052 Helicobacter pylori HPAG1 outer membrane protein Horl YP_627793.1 1107897 D 357544 CDS YP_627794.1 108563478 4099295 complement(1108727..1110703) 1 NC_008086.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1110703 4099295 HPAG1_1053 Helicobacter pylori HPAG1 excinuclease ABC subunit B YP_627794.1 1108727 R 357544 CDS YP_627795.1 108563479 4099296 complement(1110773..1111816) 1 NC_008086.1 hypothetical protein 1111816 4099296 HPAG1_1054 Helicobacter pylori HPAG1 hypothetical protein YP_627795.1 1110773 R 357544 CDS YP_627796.1 108563480 4099297 complement(1112089..1112859) 1 NC_008086.1 cysteine-rich protein X 1112859 4099297 HPAG1_1055 Helicobacter pylori HPAG1 cysteine-rich protein X YP_627796.1 1112089 R 357544 CDS YP_627797.1 108563481 4099298 complement(1113126..1114829) 1 NC_008086.1 gamma-glutamyltranspeptidase 1114829 4099298 HPAG1_1056 Helicobacter pylori HPAG1 gamma-glutamyltranspeptidase YP_627797.1 1113126 R 357544 CDS YP_627798.1 108563482 4099299 complement(1115029..1116849) 1 NC_008086.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1116849 flgK 4099299 flgK Helicobacter pylori HPAG1 flagellar hook-associated protein FlgK YP_627798.1 1115029 R 357544 CDS YP_627799.1 108563483 4099300 complement(1116851..1117285) 1 NC_008086.1 hypothetical protein 1117285 4099300 HPAG1_1058 Helicobacter pylori HPAG1 hypothetical protein YP_627799.1 1116851 R 357544 CDS YP_627800.1 108563484 4098964 complement(1117411..1118352) 1 NC_008086.1 type II DNA modification enzyme 1118352 4098964 HPAG1_1059 Helicobacter pylori HPAG1 type II DNA modification enzyme YP_627800.1 1117411 R 357544 CDS YP_627801.1 108563485 4098965 complement(1118514..1118744) 1 NC_008086.1 hypothetical protein 1118744 4098965 HPAG1_1060 Helicobacter pylori HPAG1 hypothetical protein YP_627801.1 1118514 R 357544 CDS YP_627802.1 108563486 4098966 complement(1118781..1118987) 1 NC_008086.1 hypothetical protein 1118987 4098966 HPAG1_1061 Helicobacter pylori HPAG1 hypothetical protein YP_627802.1 1118781 R 357544 CDS YP_627803.1 108563487 4098967 complement(1119019..1119576) 1 NC_008086.1 peptidyl-prolyl cis-trans isomerase 1119576 4098967 HPAG1_1062 Helicobacter pylori HPAG1 peptidyl-prolyl cis-trans isomerase YP_627803.1 1119019 R 357544 CDS YP_627804.1 108563488 4098968 complement(1119563..1120558) 1 NC_008086.1 hypothetical protein 1120558 4098968 HPAG1_1063 Helicobacter pylori HPAG1 hypothetical protein YP_627804.1 1119563 R 357544 CDS YP_627805.1 108563489 4098969 complement(1120566..1121105) 1 NC_008086.1 peptidoglycan-associated lipoprotein precursor 1121105 4098969 HPAG1_1064 Helicobacter pylori HPAG1 peptidoglycan-associated lipoprotein precursor YP_627805.1 1120566 R 357544 CDS YP_627806.1 108563490 4098970 complement(1121172..1122425) 1 NC_008086.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1122425 tolB 4098970 tolB Helicobacter pylori HPAG1 translocation protein TolB YP_627806.1 1121172 R 357544 CDS YP_627807.1 108563491 4098971 complement(1122422..1123246) 1 NC_008086.1 hypothetical protein 1123246 4098971 HPAG1_1066 Helicobacter pylori HPAG1 hypothetical protein YP_627807.1 1122422 R 357544 CDS YP_627808.1 108563492 4098972 complement(1123265..1123666) 1 NC_008086.1 biopolymer transport protein 1123666 4098972 HPAG1_1067 Helicobacter pylori HPAG1 biopolymer transport protein YP_627808.1 1123265 R 357544 CDS YP_627809.1 108563493 4098973 complement(1123719..1124288) 1 NC_008086.1 biopolymer transport protein 1124288 4098973 HPAG1_1068 Helicobacter pylori HPAG1 biopolymer transport protein YP_627809.1 1123719 R 357544 CDS YP_627810.1 108563494 4098974 complement(1124299..1124670) 1 NC_008086.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1124670 atpC 4098974 atpC Helicobacter pylori HPAG1 F0F1 ATP synthase subunit epsilon YP_627810.1 1124299 R 357544 CDS YP_627811.1 108563495 4098975 complement(1124681..1126090) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1126090 4098975 HPAG1_1070 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit beta YP_627811.1 1124681 R 357544 CDS YP_627812.1 108563496 4098976 complement(1126114..1127019) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1127019 4098976 HPAG1_1071 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit gamma YP_627812.1 1126114 R 357544 CDS YP_627813.1 108563497 4098977 complement(1127034..1128545) 1 NC_008086.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1128545 4098977 HPAG1_1072 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit alpha YP_627813.1 1127034 R 357544 CDS YP_627814.1 108563498 4098978 complement(1128568..1129110) 1 NC_008086.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1129110 4098978 HPAG1_1073 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit delta YP_627814.1 1128568 R 357544 CDS YP_627815.1 108563499 4098979 complement(1129111..1129626) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1129626 4098979 HPAG1_1074 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit B YP_627815.1 1129111 R 357544 CDS YP_627816.1 108563500 4098980 complement(1129630..1130064) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 1130064 4098980 HPAG1_1075 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit B' YP_627816.1 1129630 R 357544 CDS YP_627817.1 108563501 4098981 complement(1130175..1131047) 1 NC_008086.1 plasmid replication-partition related protein 1131047 4098981 HPAG1_1076 Helicobacter pylori HPAG1 plasmid replication-partition related protein YP_627817.1 1130175 R 357544 CDS YP_627818.1 108563502 4098982 complement(1131051..1131845) 1 NC_008086.1 spoOJ regulator 1131845 4098982 HPAG1_1077 Helicobacter pylori HPAG1 spoOJ regulator YP_627818.1 1131051 R 357544 CDS YP_627819.1 108563503 4097978 complement(1131848..1132486) 1 NC_008086.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1132486 4097978 HPAG1_1078 Helicobacter pylori HPAG1 biotin--protein ligase YP_627819.1 1131848 R 357544 CDS YP_627820.1 108563504 4097979 complement(1132483..1133400) 1 NC_008086.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1133400 fmt 4097979 fmt Helicobacter pylori HPAG1 methionyl-tRNA formyltransferase YP_627820.1 1132483 R 357544 CDS YP_627821.1 108563505 4097980 complement(1133402..1135849) 1 NC_008086.1 hypothetical protein 1135849 4097980 HPAG1_1080 Helicobacter pylori HPAG1 hypothetical protein YP_627821.1 1133402 R 357544 CDS YP_627822.1 108563506 4097981 complement(1135910..1137208) 1 NC_008086.1 hypothetical protein 1137208 4097981 HPAG1_1081 Helicobacter pylori HPAG1 hypothetical protein YP_627822.1 1135910 R 357544 CDS YP_627823.1 108563507 4097982 1137467..1137562 1 NC_008086.1 hypothetical protein 1137562 4097982 HPAG1_1082 Helicobacter pylori HPAG1 hypothetical protein YP_627823.1 1137467 D 357544 CDS YP_627824.1 108563508 4097983 complement(1137948..1138142) 1 NC_008086.1 hypothetical protein 1138142 4097983 HPAG1_1083 Helicobacter pylori HPAG1 hypothetical protein YP_627824.1 1137948 R 357544 CDS YP_627825.1 108563509 4097985 complement(1140747..1141106) 1 NC_008086.1 hypothetical protein 1141106 4097985 HPAG1_1084 Helicobacter pylori HPAG1 hypothetical protein YP_627825.1 1140747 R 357544 CDS YP_627826.1 108563510 4097986 complement(1141099..1141335) 1 NC_008086.1 hypothetical protein 1141335 4097986 HPAG1_1085 Helicobacter pylori HPAG1 hypothetical protein YP_627826.1 1141099 R 357544 CDS YP_627827.1 108563511 4097987 complement(1141947..1142303) 1 NC_008086.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1142303 rplS 4097987 rplS Helicobacter pylori HPAG1 50S ribosomal protein L19 YP_627827.1 1141947 R 357544 CDS YP_627828.1 108563512 4097988 complement(1142326..1143015) 1 NC_008086.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1143015 trmD 4097988 trmD Helicobacter pylori HPAG1 tRNA (guanine-N(1)-)-methyltransferase YP_627828.1 1142326 R 357544 CDS YP_627829.1 108563513 4097989 complement(1143016..1143570) 1 NC_008086.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1143570 rimM 4097989 rimM Helicobacter pylori HPAG1 16S rRNA-processing protein RimM YP_627829.1 1143016 R 357544 CDS YP_627830.1 108563514 4097990 complement(1143571..1143894) 1 NC_008086.1 hypothetical protein 1143894 4097990 HPAG1_1089 Helicobacter pylori HPAG1 hypothetical protein YP_627830.1 1143571 R 357544 CDS YP_627831.1 108563515 4097991 complement(1143911..1144141) 1 NC_008086.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1144141 rpsP 4097991 rpsP Helicobacter pylori HPAG1 30S ribosomal protein S16 YP_627831.1 1143911 R 357544 CDS YP_627832.1 108563516 4097992 complement(1144215..1145561) 1 NC_008086.1 signal recognition particle protein 1145561 4097992 HPAG1_1091 Helicobacter pylori HPAG1 signal recognition particle protein YP_627832.1 1144215 R 357544 CDS YP_627833.1 108563517 4097993 complement(1145576..1148200) 1 NC_008086.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1148200 valS 4097993 valS Helicobacter pylori HPAG1 valyl-tRNA synthetase YP_627833.1 1145576 R 357544 CDS YP_627834.1 108563518 4097994 1148331..1148738 1 NC_008086.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1148738 4097994 HPAG1_1093 Helicobacter pylori HPAG1 flagellar assembly protein FliW YP_627834.1 1148331 D 357544 CDS YP_627835.1 108563519 4097995 1148750..1149811 1 NC_008086.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1149811 murG 4097995 murG Helicobacter pylori HPAG1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_627835.1 1148750 D 357544 CDS YP_627836.1 108563520 4097996 1149919..1152009 1 NC_008086.1 outer membrane protein HopI 1152009 4097996 HPAG1_1095 Helicobacter pylori HPAG1 outer membrane protein HopI YP_627836.1 1149919 D 357544 CDS YP_627837.1 108563521 4098373 1152032..1155754 1 NC_008086.1 outer membrane protein HopL 1155754 4098373 HPAG1_1096 Helicobacter pylori HPAG1 outer membrane protein HopL YP_627837.1 1152032 D 357544 CDS YP_627838.1 108563522 4098374 1155770..1156543 1 NC_008086.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1156543 4098374 HPAG1_1097 Helicobacter pylori HPAG1 pyrroline-5-carboxylate reductase YP_627838.1 1155770 D 357544 CDS YP_627839.1 108563523 4098375 1156571..1157104 1 NC_008086.1 cell filamentation protein 1157104 4098375 HPAG1_1098 Helicobacter pylori HPAG1 cell filamentation protein YP_627839.1 1156571 D 357544 CDS YP_627840.1 108563524 4098376 complement(1157351..1157773) 1 NC_008086.1 putative metalloprotease 1157773 4098376 HPAG1_1099 Helicobacter pylori HPAG1 putative metalloprotease YP_627840.1 1157351 R 357544 CDS YP_627841.1 108563525 4098377 complement(1157827..1158321) 1 NC_008086.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1158321 4098377 HPAG1_1100 Helicobacter pylori HPAG1 flavodoxin FldA YP_627841.1 1157827 R 357544 CDS YP_627842.1 108563526 4098378 complement(1158413..1158994) 1 NC_008086.1 hypothetical protein 1158994 4098378 HPAG1_1101 Helicobacter pylori HPAG1 hypothetical protein YP_627842.1 1158413 R 357544 CDS YP_627843.1 108563527 4098379 1159117..1159308 1 NC_008086.1 cation transport subunit for cbb3-type oxidase 1159308 4098379 HPAG1_1102 Helicobacter pylori HPAG1 cation transport subunit for cbb3-type oxidase YP_627843.1 1159117 D 357544 CDS YP_627844.1 108563528 4098380 1159334..1160308 1 NC_008086.1 thioredoxin reductase 1160308 4098380 HPAG1_1103 Helicobacter pylori HPAG1 thioredoxin reductase YP_627844.1 1159334 D 357544 CDS YP_627845.1 108563529 4098381 complement(1160315..1161475) 1 NC_008086.1 tetracycline resistance protein tetA(P) 1161475 4098381 HPAG1_1104 Helicobacter pylori HPAG1 tetracycline resistance protein tetA(P) YP_627845.1 1160315 R 357544 CDS YP_627846.1 108563530 4098382 1161539..1163176 1 NC_008086.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1163176 pgi 4098382 pgi Helicobacter pylori HPAG1 glucose-6-phosphate isomerase YP_627846.1 1161539 D 357544 CDS YP_627847.1 108563531 4098383 1163482..1164897 1 NC_008086.1 outer membrane protein HofH 1164897 4098383 HPAG1_1106 Helicobacter pylori HPAG1 outer membrane protein HofH YP_627847.1 1163482 D 357544 CDS YP_627848.1 108563532 4098384 complement(1165190..1167253) 1 NC_008086.1 carbon starvation protein 1167253 4098384 HPAG1_1107 Helicobacter pylori HPAG1 carbon starvation protein YP_627848.1 1165190 R 357544 CDS YP_627849.1 108563533 4098385 1167463..1168116 1 NC_008086.1 glutamine ABC transporter, permease protein 1168116 4098385 HPAG1_1108 Helicobacter pylori HPAG1 glutamine ABC transporter, permease protein YP_627849.1 1167463 D 357544 CDS YP_627850.1 108563534 4098386 1168119..1168790 1 NC_008086.1 glutamine ABC transporter, permease protein 1168790 4098386 HPAG1_1109 Helicobacter pylori HPAG1 glutamine ABC transporter, permease protein YP_627850.1 1168119 D 357544 CDS YP_627851.1 108563535 4098387 1168792..1169538 1 NC_008086.1 glutamine ABC transporter, ATP-binding protein 1169538 4098387 HPAG1_1110 Helicobacter pylori HPAG1 glutamine ABC transporter, ATP-binding protein YP_627851.1 1168792 D 357544 CDS YP_627852.1 108563536 4098388 1169587..1170420 1 NC_008086.1 glutamine ABC transporter, periplasmic glutamine-binding protein 1170420 4098388 HPAG1_1111 Helicobacter pylori HPAG1 glutamine ABC transporter, periplasmic glutamine-binding protein YP_627852.1 1169587 D 357544 CDS YP_627853.1 108563537 4098389 1170542..1171093 1 NC_008086.1 hypothetical protein 1171093 4098389 HPAG1_1112 Helicobacter pylori HPAG1 hypothetical protein YP_627853.1 1170542 D 357544 CDS YP_627854.1 108563538 4098390 complement(1171316..1172539) 1 NC_008086.1 glucose/galactose transporter 1172539 4098390 HPAG1_1113 Helicobacter pylori HPAG1 glucose/galactose transporter YP_627854.1 1171316 R 357544 CDS YP_627855.1 108563539 4098391 complement(1172668..1173975) 1 NC_008086.1 hypothetical protein 1173975 4098391 HPAG1_1114 Helicobacter pylori HPAG1 hypothetical protein YP_627855.1 1172668 R 357544 CDS YP_627856.1 108563540 4098260 complement(1174427..1176352) 1 NC_008086.1 outer membrane protein HopQ 1176352 4098260 HPAG1_1115 Helicobacter pylori HPAG1 outer membrane protein HopQ YP_627856.1 1174427 R 357544 CDS YP_627857.1 108563541 4098261 1176598..1176690 1 NC_008086.1 hypothetical protein 1176690 4098261 HPAG1_1116 Helicobacter pylori HPAG1 hypothetical protein YP_627857.1 1176598 D 357544 CDS YP_627858.1 108563542 4098262 complement(1176813..1177514) 1 NC_008086.1 purine-nucleoside phosphorylase 1177514 4098262 HPAG1_1117 Helicobacter pylori HPAG1 purine-nucleoside phosphorylase YP_627858.1 1176813 R 357544 CDS YP_627859.1 108563543 4098263 complement(1177511..1178752) 1 NC_008086.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1178752 4098263 HPAG1_1118 Helicobacter pylori HPAG1 phosphopentomutase YP_627859.1 1177511 R 357544 CDS YP_627860.1 108563544 4098264 complement(1178764..1180020) 1 NC_008086.1 pyrimidine nucleoside transport protein 1180020 4098264 HPAG1_1119 Helicobacter pylori HPAG1 pyrimidine nucleoside transport protein YP_627860.1 1178764 R 357544 CDS YP_627861.1 108563545 4098266 1180333..1181664 1 NC_008086.1 multidrug-efflux transporter 1181664 4098266 HPAG1_1120 Helicobacter pylori HPAG1 multidrug-efflux transporter YP_627861.1 1180333 D 357544 CDS YP_627862.1 108563546 4098267 1181684..1182445 1 NC_008086.1 hypothetical protein 1182445 4098267 HPAG1_1121 Helicobacter pylori HPAG1 hypothetical protein YP_627862.1 1181684 D 357544 CDS YP_627863.1 108563547 4098268 complement(1182454..1183605) 1 NC_008086.1 Na+/H+ antiporter 1183605 4098268 HPAG1_1122 Helicobacter pylori HPAG1 Na+/H+ antiporter YP_627863.1 1182454 R 357544 CDS YP_627864.1 108563549 4098270 complement(1183631..1185010) 1 NC_008086.1 hypothetical protein 1185010 4098270 HPAG1_1123 Helicobacter pylori HPAG1 hypothetical protein YP_627864.1 1183631 R 357544 CDS YP_627865.1 108563548 4098269 1184984..1185184 1 NC_008086.1 hypothetical protein 1185184 4098269 HPAG1_1124 Helicobacter pylori HPAG1 hypothetical protein YP_627865.1 1184984 D 357544 CDS YP_627866.1 108563550 4098271 complement(1185171..1186346) 1 NC_008086.1 sugar efflux transporter 1186346 4098271 HPAG1_1125 Helicobacter pylori HPAG1 sugar efflux transporter YP_627866.1 1185171 R 357544 CDS YP_627867.1 108563551 4098272 1186622..1187365 1 NC_008086.1 alpha-carbonic anhydrase 1187365 4098272 HPAG1_1126 Helicobacter pylori HPAG1 alpha-carbonic anhydrase YP_627867.1 1186622 D 357544 CDS YP_627868.1 108563552 4098273 complement(1187586..1188635) 1 NC_008086.1 hypothetical protein 1188635 4098273 HPAG1_1127 Helicobacter pylori HPAG1 hypothetical protein YP_627868.1 1187586 R 357544 CDS YP_627869.1 108563553 4098274 complement(1188900..1190063) 1 NC_008086.1 hypothetical protein 1190063 4098274 HPAG1_1128 Helicobacter pylori HPAG1 hypothetical protein YP_627869.1 1188900 R 357544 CDS YP_627870.1 108563554 4098275 complement(1190348..1191415) 1 NC_008086.1 hypothetical protein 1191415 4098275 HPAG1_1129 Helicobacter pylori HPAG1 hypothetical protein YP_627870.1 1190348 R 357544 CDS YP_627871.1 108563555 4098276 complement(1191843..1192883) 1 NC_008086.1 aspartate-semialdehyde dehydrogenase 1192883 4098276 HPAG1_1130 Helicobacter pylori HPAG1 aspartate-semialdehyde dehydrogenase YP_627871.1 1191843 R 357544 CDS YP_627872.1 108563556 4098277 complement(1192870..1194198) 1 NC_008086.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1194198 hisS 4098277 hisS Helicobacter pylori HPAG1 histidyl-tRNA synthetase YP_627872.1 1192870 R 357544 CDS YP_627873.1 108563557 4098278 1194260..1195309 1 NC_008086.1 ADP-heptose-LPS heptosyltransferase II 1195309 4098278 HPAG1_1132 Helicobacter pylori HPAG1 ADP-heptose-LPS heptosyltransferase II YP_627873.1 1194260 D 357544 CDS YP_627874.1 108563558 4098425 complement(1195501..1195890) 1 NC_008086.1 hypothetical protein 1195890 4098425 HPAG1_1133 Helicobacter pylori HPAG1 hypothetical protein YP_627874.1 1195501 R 357544 CDS YP_627875.1 108563559 4098426 complement(1196244..1198322) 1 NC_008086.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1198322 4098426 HPAG1_1134 Helicobacter pylori HPAG1 elongation factor G YP_627875.1 1196244 R 357544 CDS YP_627876.1 108563560 4098427 complement(1198334..1198801) 1 NC_008086.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1198801 4098427 HPAG1_1135 Helicobacter pylori HPAG1 30S ribosomal protein S7 YP_627876.1 1198334 R 357544 CDS YP_627877.1 108563561 4098428 complement(1198817..1199224) 1 NC_008086.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1199224 rpsL 4098428 rpsL Helicobacter pylori HPAG1 30S ribosomal protein S12 YP_627877.1 1198817 R 357544 CDS YP_627878.1 108563562 4098429 complement(1199313..1207985) 1 NC_008086.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta/beta' 1207985 4098429 HPAG1_1137 Helicobacter pylori HPAG1 DNA-directed RNA polymerase subunit beta/beta' YP_627878.1 1199313 R 357544 CDS YP_627879.1 108563563 4098430 complement(1208215..1208592) 1 NC_008086.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1208592 rplL 4098430 rplL Helicobacter pylori HPAG1 50S ribosomal protein L7/L12 YP_627879.1 1208215 R 357544 CDS YP_627880.1 108563564 4098431 complement(1208638..1209132) 1 NC_008086.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1209132 rplJ 4098431 rplJ Helicobacter pylori HPAG1 50S ribosomal protein L10 YP_627880.1 1208638 R 357544 CDS YP_627881.1 108563565 4098432 complement(1209241..1209945) 1 NC_008086.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1209945 rplA 4098432 rplA Helicobacter pylori HPAG1 50S ribosomal protein L1 YP_627881.1 1209241 R 357544 CDS YP_627882.1 108563566 4098433 complement(1209990..1210415) 1 NC_008086.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1210415 rplK 4098433 rplK Helicobacter pylori HPAG1 50S ribosomal protein L11 YP_627882.1 1209990 R 357544 CDS YP_627883.1 108563567 4098434 complement(1210433..1210963) 1 NC_008086.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1210963 nusG 4098434 nusG Helicobacter pylori HPAG1 transcription antitermination protein NusG YP_627883.1 1210433 R 357544 CDS YP_627884.1 108563568 4098435 complement(1210990..1211169) 1 NC_008086.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1211169 secE 4098435 secE Helicobacter pylori HPAG1 preprotein translocase subunit SecE YP_627884.1 1210990 R 357544 CDS YP_627885.1 108563569 4098437 complement(1211427..1211585) 1 NC_008086.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1211585 rpmG 4098437 rpmG Helicobacter pylori HPAG1 50S ribosomal protein L33 YP_627885.1 1211427 R 357544 CDS YP_627886.1 108563570 4098438 complement(1211619..1212152) 1 NC_008086.1 translation elongation factor EF-Tu 1212152 4098438 HPAG1_1145 Helicobacter pylori HPAG1 translation elongation factor EF-Tu YP_627886.1 1211619 R 357544 CDS YP_627887.1 108563571 4098439 complement(1212092..1212817) 1 NC_008086.1 translation elongation factor EF-Tu 1212817 4098439 HPAG1_1146 Helicobacter pylori HPAG1 translation elongation factor EF-Tu YP_627887.1 1212092 R 357544 CDS YP_627888.1 108563572 4099172 1213514..1215250 1 NC_008086.1 ABC transporter ATPase 1215250 4099172 HPAG1_1147 Helicobacter pylori HPAG1 ABC transporter ATPase YP_627888.1 1213514 D 357544 CDS YP_627889.1 108563573 4099173 complement(1215259..1215927) 1 NC_008086.1 hypothetical protein 1215927 4099173 HPAG1_1148 Helicobacter pylori HPAG1 hypothetical protein YP_627889.1 1215259 R 357544 CDS YP_627890.1 108563574 4099174 complement(1216030..1217019) 1 NC_008086.1 type II adenine specific DNA methyltransferase 1217019 4099174 HPAG1_1149 Helicobacter pylori HPAG1 type II adenine specific DNA methyltransferase YP_627890.1 1216030 R 357544 CDS YP_627891.1 108563575 4099175 complement(1217028..1217276) 1 NC_008086.1 iceA1 1217276 4099175 HPAG1_1150 Helicobacter pylori HPAG1 iceA1 YP_627891.1 1217028 R 357544 CDS YP_627892.1 108563576 4099176 complement(1217269..1217715) 1 NC_008086.1 iceA1 1217715 4099176 HPAG1_1151 Helicobacter pylori HPAG1 iceA1 YP_627892.1 1217269 R 357544 CDS YP_627893.1 108563577 4099177 complement(1217800..1218315) 1 NC_008086.1 serine acetyltransferase 1218315 4099177 HPAG1_1152 Helicobacter pylori HPAG1 serine acetyltransferase YP_627893.1 1217800 R 357544 CDS YP_627894.1 108563578 4099180 complement(1218908..1219225) 1 NC_008086.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1219225 4099180 HPAG1_1153 Helicobacter pylori HPAG1 F0F1 ATP synthase subunit C YP_627894.1 1218908 R 357544 CDS YP_627895.1 108563579 4099181 complement(1219358..1221424) 1 NC_008086.1 polynucleotide phosphorylase/polyadenylase 1221424 4099181 HPAG1_1154 Helicobacter pylori HPAG1 polynucleotide phosphorylase/polyadenylase YP_627895.1 1219358 R 357544 CDS YP_627896.1 108563580 4099182 complement(1221427..1222137) 1 NC_008086.1 hypothetical protein 1222137 4099182 HPAG1_1155 Helicobacter pylori HPAG1 hypothetical protein YP_627896.1 1221427 R 357544 CDS YP_627897.1 108563581 4099183 complement(1222146..1224407) 1 NC_008086.1 organic solvent tolerance protein 1224407 4099183 HPAG1_1156 Helicobacter pylori HPAG1 organic solvent tolerance protein YP_627897.1 1222146 R 357544 CDS YP_627898.1 108563582 4098732 complement(1224410..1224889) 1 NC_008086.1 hypothetical protein 1224889 4098732 HPAG1_1157 Helicobacter pylori HPAG1 hypothetical protein YP_627898.1 1224410 R 357544 CDS YP_627899.1 108563583 4098733 complement(1224938..1226212) 1 NC_008086.1 glycinamide ribonucleotide synthetase 1226212 4098733 HPAG1_1158 Helicobacter pylori HPAG1 glycinamide ribonucleotide synthetase YP_627899.1 1224938 R 357544 CDS YP_627900.1 108563584 4098734 1226332..1226532 1 NC_008086.1 hypothetical protein 1226532 4098734 HPAG1_1159 Helicobacter pylori HPAG1 hypothetical protein YP_627900.1 1226332 D 357544 CDS YP_627901.1 108563585 4098735 complement(1226595..1226975) 1 NC_008086.1 hypothetical protein 1226975 4098735 HPAG1_1160 Helicobacter pylori HPAG1 hypothetical protein YP_627901.1 1226595 R 357544 CDS YP_627902.1 108563586 4098736 complement(1227138..1227461) 1 NC_008086.1 hypothetical protein 1227461 4098736 HPAG1_1161 Helicobacter pylori HPAG1 hypothetical protein YP_627902.1 1227138 R 357544 CDS YP_627903.1 108563587 4098737 complement(1227855..1228541) 1 NC_008086.1 ABC transporter, ATP-binding protein 1228541 4098737 HPAG1_1162 Helicobacter pylori HPAG1 ABC transporter, ATP-binding protein YP_627903.1 1227855 R 357544 CDS YP_627904.1 108563588 4098738 complement(1228535..1229239) 1 NC_008086.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1229239 4098738 HPAG1_1163 Helicobacter pylori HPAG1 undecaprenyl pyrophosphate synthase YP_627904.1 1228535 R 357544 CDS YP_627905.1 108563589 4098739 complement(1229280..1232120) 1 NC_008086.1 D-lactate dehydrogenase 1232120 4098739 HPAG1_1164 Helicobacter pylori HPAG1 D-lactate dehydrogenase YP_627905.1 1229280 R 357544 CDS YP_627906.1 108563590 4098740 1232192..1232524 1 NC_008086.1 hypothetical protein 1232524 4098740 HPAG1_1165 Helicobacter pylori HPAG1 hypothetical protein YP_627906.1 1232192 D 357544 CDS YP_627907.1 108563591 4098741 1232527..1233207 1 NC_008086.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1233207 hemD 4098741 hemD Helicobacter pylori HPAG1 uroporphyrinogen-III synthase YP_627907.1 1232527 D 357544 CDS YP_627908.1 108563592 4098742 1233255..1233647 1 NC_008086.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1233647 4098742 HPAG1_1167 Helicobacter pylori HPAG1 camphor resistance protein CrcB YP_627908.1 1233255 D 357544 CDS YP_627909.1 108563593 4098743 complement(1233698..1234756) 1 NC_008086.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1234756 4098743 HPAG1_1168 Helicobacter pylori HPAG1 coproporphyrinogen III oxidase YP_627909.1 1233698 R 357544 CDS YP_627910.1 108563594 4098744 1234832..1235122 1 NC_008086.1 hypothetical protein 1235122 4098744 HPAG1_1169 Helicobacter pylori HPAG1 hypothetical protein YP_627910.1 1234832 D 357544 CDS YP_627911.1 108563595 4098745 1235283..1235750 1 NC_008086.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1235750 4098745 HPAG1_1170 Helicobacter pylori HPAG1 dinucleoside polyphosphate hydrolase YP_627911.1 1235283 D 357544 CDS YP_627912.1 108563596 4098746 1235752..1236969 1 NC_008086.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1236969 4098746 HPAG1_1171 Helicobacter pylori HPAG1 aspartate kinase YP_627912.1 1235752 D 357544 CDS YP_627913.1 108563597 4098747 1236966..1237508 1 NC_008086.1 hypothetical protein 1237508 4098747 HPAG1_1172 Helicobacter pylori HPAG1 hypothetical protein YP_627913.1 1236966 D 357544 CDS YP_627914.1 108563598 4098748 1237505..1238161 1 NC_008086.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1238161 4098748 HPAG1_1173 Helicobacter pylori HPAG1 DNA polymerase III subunit delta' YP_627914.1 1237505 D 357544 CDS YP_627915.1 108563599 4098749 1238158..1239300 1 NC_008086.1 dihydropteroate synthase 1239300 4098749 HPAG1_1174 Helicobacter pylori HPAG1 dihydropteroate synthase YP_627915.1 1238158 D 357544 CDS YP_627916.1 108563600 4098750 complement(1239388..1239849) 1 NC_008086.1 hypothetical protein 1239849 4098750 HPAG1_1175 Helicobacter pylori HPAG1 hypothetical protein YP_627916.1 1239388 R 357544 CDS YP_627917.1 108563601 4098751 1240239..1241147 1 NC_008086.1 hypothetical protein 1241147 4098751 HPAG1_1176 Helicobacter pylori HPAG1 hypothetical protein YP_627917.1 1240239 D 357544 CDS YP_627918.1 108563602 4098090 1241138..1242385 1 NC_008086.1 hypothetical protein 1242385 4098090 HPAG1_1177 Helicobacter pylori HPAG1 hypothetical protein YP_627918.1 1241138 D 357544 CDS YP_627919.1 108563603 4098091 1242464..1243015 1 NC_008086.1 hypothetical protein 1243015 4098091 HPAG1_1178 Helicobacter pylori HPAG1 hypothetical protein YP_627919.1 1242464 D 357544 CDS YP_627920.1 108563604 4098092 1243015..1244142 1 NC_008086.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1244142 4098092 HPAG1_1179 Helicobacter pylori HPAG1 carbamoyl phosphate synthase small subunit YP_627920.1 1243015 D 357544 CDS YP_627921.1 108563605 4098093 1244308..1245312 1 NC_008086.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 1245312 amiF 4098093 amiF Helicobacter pylori HPAG1 formamidase YP_627921.1 1244308 D 357544 CDS YP_627923.1 108563607 4098095 complement(1245751..1246323) 1 NC_008086.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1246323 4098095 HPAG1_1182 Helicobacter pylori HPAG1 Maf-like protein YP_627923.1 1245751 R 357544 CDS YP_627924.1 108563608 4098096 complement(1246325..1248868) 1 NC_008086.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1248868 alaS 4098096 alaS Helicobacter pylori HPAG1 alanyl-tRNA synthetase YP_627924.1 1246325 R 357544 CDS YP_627925.1 108563609 4098097 1248987..1249217 1 NC_008086.1 hypothetical protein 1249217 4098097 HPAG1_1184 Helicobacter pylori HPAG1 hypothetical protein YP_627925.1 1248987 D 357544 CDS YP_627926.1 108563610 4098098 complement(1249607..1249855) 1 NC_008086.1 hypothetical protein 1249855 4098098 HPAG1_1185 Helicobacter pylori HPAG1 hypothetical protein YP_627926.1 1249607 R 357544 CDS YP_627927.1 108563611 4098099 complement(1250171..1252387) 1 NC_008086.1 outer membrane protein HopU 1252387 4098099 HPAG1_1186 Helicobacter pylori HPAG1 outer membrane protein HopU YP_627927.1 1250171 R 357544 CDS YP_627928.1 108563612 4098100 complement(1252912..1253169) 1 NC_008086.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1253169 rpsR 4098100 rpsR Helicobacter pylori HPAG1 30S ribosomal protein S18 YP_627928.1 1252912 R 357544 CDS YP_627929.1 108563613 4098101 complement(1253192..1253737) 1 NC_008086.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1253737 4098101 HPAG1_1188 Helicobacter pylori HPAG1 single-stranded DNA-binding protein YP_627929.1 1253192 R 357544 CDS YP_627930.1 108563614 4098102 complement(1253747..1254175) 1 NC_008086.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1254175 rpsF 4098102 rpsF Helicobacter pylori HPAG1 30S ribosomal protein S6 YP_627930.1 1253747 R 357544 CDS YP_627931.1 108563615 4098103 complement(1254319..1255341) 1 NC_008086.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1255341 4098103 HPAG1_1190 Helicobacter pylori HPAG1 DNA polymerase III subunit delta YP_627931.1 1254319 R 357544 CDS YP_627932.1 108563616 4098104 complement(1255331..1257265) 1 NC_008086.1 3'-5' exoribonuclease R 1257265 4098104 HPAG1_1191 Helicobacter pylori HPAG1 3'-5' exoribonuclease R YP_627932.1 1255331 R 357544 CDS YP_627933.1 108563617 4098105 complement(1257265..1258056) 1 NC_008086.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1258056 aroE 4098105 aroE Helicobacter pylori HPAG1 shikimate 5-dehydrogenase YP_627933.1 1257265 R 357544 CDS YP_627934.1 108563618 4098106 complement(1258064..1258654) 1 NC_008086.1 hypothetical protein 1258654 4098106 HPAG1_1193 Helicobacter pylori HPAG1 hypothetical protein YP_627934.1 1258064 R 357544 CDS YP_627935.1 108563619 4098107 complement(1258663..1259709) 1 NC_008086.1 oligopeptide ABC transporter, permease protein 1259709 4098107 HPAG1_1194 Helicobacter pylori HPAG1 oligopeptide ABC transporter, permease protein YP_627935.1 1258663 R 357544 CDS YP_627936.1 108563620 4098108 complement(1259706..1260971) 1 NC_008086.1 oligopeptide ABC transporter 1260971 4098108 HPAG1_1195 Helicobacter pylori HPAG1 oligopeptide ABC transporter YP_627936.1 1259706 R 357544 CDS YP_627937.1 108563621 4098279 complement(1260956..1261486) 1 NC_008086.1 oligopeptide ABC transporter 1261486 4098279 HPAG1_1196 Helicobacter pylori HPAG1 oligopeptide ABC transporter YP_627937.1 1260956 R 357544 CDS YP_627938.1 108563622 4098280 complement(1261487..1262506) 1 NC_008086.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1262506 4098280 HPAG1_1197 Helicobacter pylori HPAG1 tryptophanyl-tRNA synthetase YP_627938.1 1261487 R 357544 CDS YP_627939.1 108563623 4098281 complement(1262538..1263275) 1 NC_008086.1 biotin synthesis protein 1263275 4098281 HPAG1_1198 Helicobacter pylori HPAG1 biotin synthesis protein YP_627939.1 1262538 R 357544 CDS YP_627940.1 108563624 4098282 1263392..1263982 1 NC_008086.1 preprotein translocase subunit SecG 1263982 secG 4098282 secG Helicobacter pylori HPAG1 preprotein translocase subunit SecG YP_627940.1 1263392 D 357544 CDS YP_627941.1 108563625 4098283 1263982..1264539 1 NC_008086.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1264539 frr 4098283 frr Helicobacter pylori HPAG1 ribosome recycling factor YP_627941.1 1263982 D 357544 CDS YP_627942.1 108563626 4098284 1264543..1265148 1 NC_008086.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1265148 pyrE 4098284 pyrE Helicobacter pylori HPAG1 orotate phosphoribosyltransferase YP_627942.1 1264543 D 357544 CDS YP_627943.1 108563627 4098285 1265138..1265602 1 NC_008086.1 similar to mitochondrial protein 4; hypothetical protein 1265602 4098285 HPAG1_1202 Helicobacter pylori HPAG1 hypothetical protein YP_627943.1 1265138 D 357544 CDS YP_627944.1 108563628 4098286 1265599..1266303 1 NC_008086.1 hypothetical protein 1266303 4098286 HPAG1_1203 Helicobacter pylori HPAG1 hypothetical protein YP_627944.1 1265599 D 357544 CDS YP_627945.1 108563629 4098287 1266396..1266797 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 1266797 4098287 HPAG1_1204 Helicobacter pylori HPAG1 NADH dehydrogenase subunit A YP_627945.1 1266396 D 357544 CDS YP_627946.1 108563630 4098288 1266797..1267276 1 NC_008086.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1267276 4098288 HPAG1_1205 Helicobacter pylori HPAG1 NADH dehydrogenase subunit B YP_627946.1 1266797 D 357544 CDS YP_627947.1 108563631 4098289 1267273..1268073 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 1268073 4098289 HPAG1_1206 Helicobacter pylori HPAG1 NADH dehydrogenase subunit C YP_627947.1 1267273 D 357544 CDS YP_627948.1 108563632 4098290 1268075..1269304 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1269304 4098290 HPAG1_1207 Helicobacter pylori HPAG1 NADH dehydrogenase subunit D YP_627948.1 1268075 D 357544 CDS YP_627949.1 108563633 4098291 1269301..1269531 1 NC_008086.1 NADH-ubiquinone oxidoreductase chain E 1269531 4098291 HPAG1_1208 Helicobacter pylori HPAG1 NADH-ubiquinone oxidoreductase chain E YP_627949.1 1269301 D 357544 CDS YP_627950.1 108563634 4098292 1269534..1270520 1 NC_008086.1 NADH-ubiquinone oxidoreductase chain F 1270520 4098292 HPAG1_1209 Helicobacter pylori HPAG1 NADH-ubiquinone oxidoreductase chain F YP_627950.1 1269534 D 357544 CDS YP_627951.1 108563635 4098293 1270517..1273051 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1273051 4098293 HPAG1_1210 Helicobacter pylori HPAG1 NADH dehydrogenase subunit G YP_627951.1 1270517 D 357544 CDS YP_627952.1 108563636 4098294 1273048..1274037 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1274037 4098294 HPAG1_1211 Helicobacter pylori HPAG1 NADH dehydrogenase subunit H YP_627952.1 1273048 D 357544 CDS YP_627953.1 108563637 4098295 1274048..1274710 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1274710 4098295 HPAG1_1212 Helicobacter pylori HPAG1 NADH dehydrogenase subunit I YP_627953.1 1274048 D 357544 CDS YP_627954.1 108563638 4098296 1274703..1275251 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1275251 4098296 HPAG1_1213 Helicobacter pylori HPAG1 NADH dehydrogenase subunit J YP_627954.1 1274703 D 357544 CDS YP_627955.1 108563639 4098297 1275248..1275550 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1275550 4098297 HPAG1_1214 Helicobacter pylori HPAG1 NADH dehydrogenase subunit K YP_627955.1 1275248 D 357544 CDS YP_627956.1 108563640 4098298 1275553..1277391 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1277391 4098298 HPAG1_1215 Helicobacter pylori HPAG1 NADH dehydrogenase subunit L YP_627956.1 1275553 D 357544 CDS YP_627957.1 108563641 4098241 1277395..1278933 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1278933 4098241 HPAG1_1216 Helicobacter pylori HPAG1 NADH dehydrogenase subunit M YP_627957.1 1277395 D 357544 CDS YP_627958.1 108563642 4098242 1278920..1280392 1 NC_008086.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1280392 4098242 HPAG1_1217 Helicobacter pylori HPAG1 NADH dehydrogenase subunit N YP_627958.1 1278920 D 357544 CDS YP_627959.1 108563643 4098243 1280382..1282787 1 NC_008086.1 paralysed flagella protein 1282787 4098243 HPAG1_1218 Helicobacter pylori HPAG1 paralysed flagella protein YP_627959.1 1280382 D 357544 CDS YP_627960.1 108563644 4098244 1282789..1284168 1 NC_008086.1 phosphomannomutase 1284168 4098244 HPAG1_1219 Helicobacter pylori HPAG1 phosphomannomutase YP_627960.1 1282789 D 357544 CDS YP_627961.1 108563645 4098245 1284349..1284768 1 NC_008086.1 hypothetical protein 1284768 4098245 HPAG1_1220 Helicobacter pylori HPAG1 hypothetical protein YP_627961.1 1284349 D 357544 CDS YP_627962.1 108563646 4098246 1285061..1285402 1 NC_008086.1 hypothetical protein 1285402 4098246 HPAG1_1221 Helicobacter pylori HPAG1 hypothetical protein YP_627962.1 1285061 D 357544 CDS YP_627963.1 108563647 4098247 complement(1285423..1286037) 1 NC_008086.1 hypothetical protein 1286037 4098247 HPAG1_1222 Helicobacter pylori HPAG1 hypothetical protein YP_627963.1 1285423 R 357544 CDS YP_627964.1 108563648 4098248 complement(1286025..1286687) 1 NC_008086.1 nicotinamide mononucleotide transporter 1286687 4098248 HPAG1_1223 Helicobacter pylori HPAG1 nicotinamide mononucleotide transporter YP_627964.1 1286025 R 357544 CDS YP_627965.1 108563649 4098249 complement(1286872..1287342) 1 NC_008086.1 hypothetical protein 1287342 4098249 HPAG1_1224 Helicobacter pylori HPAG1 hypothetical protein YP_627965.1 1286872 R 357544 CDS YP_627966.1 108563650 4098250 complement(1287366..1287731) 1 NC_008086.1 hypothetical protein 1287731 4098250 HPAG1_1225 Helicobacter pylori HPAG1 hypothetical protein YP_627966.1 1287366 R 357544 CDS YP_627967.1 108563651 4098251 1288422..1289075 1 NC_008086.1 putative transcriptional regulator 1289075 4098251 HPAG1_1226 Helicobacter pylori HPAG1 putative transcriptional regulator YP_627967.1 1288422 D 357544 CDS YP_627968.1 108563652 4098252 complement(1289139..1289687) 1 NC_008086.1 hypothetical protein 1289687 4098252 HPAG1_1227 Helicobacter pylori HPAG1 hypothetical protein YP_627968.1 1289139 R 357544 CDS YP_627969.1 108563653 4098253 1289811..1290548 1 NC_008086.1 acid phosphatase lipoprotein 1290548 4098253 HPAG1_1228 Helicobacter pylori HPAG1 acid phosphatase lipoprotein YP_627969.1 1289811 D 357544 CDS YP_627970.1 108563654 4098254 1290617..1291675 1 NC_008086.1 hypothetical protein 1291675 4098254 HPAG1_1229 Helicobacter pylori HPAG1 hypothetical protein YP_627970.1 1290617 D 357544 CDS YP_627971.1 108563655 4098255 1291907..1293409 1 NC_008086.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1293409 4098255 HPAG1_1230 Helicobacter pylori HPAG1 anthranilate synthase component I YP_627971.1 1291907 D 357544 CDS YP_627972.1 108563656 4098256 1293406..1293990 1 NC_008086.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1293990 4098256 HPAG1_1231 Helicobacter pylori HPAG1 anthranilate synthase component II YP_627972.1 1293406 D 357544 CDS YP_627973.1 108563657 4098257 1293987..1294994 1 NC_008086.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1294994 trpD 4098257 trpD Helicobacter pylori HPAG1 anthranilate phosphoribosyltransferase YP_627973.1 1293987 D 357544 CDS YP_627974.1 108563658 4098258 1294987..1296345 1 NC_008086.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1296345 4098258 HPAG1_1233 Helicobacter pylori HPAG1 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_627974.1 1294987 D 357544 CDS YP_627975.1 108563659 4098259 1296346..1297527 1 NC_008086.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1297527 4098259 HPAG1_1234 Helicobacter pylori HPAG1 tryptophan synthase subunit beta YP_627975.1 1296346 D 357544 CDS YP_627976.1 108563660 4098017 1297524..1298312 1 NC_008086.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1298312 trpA 4098017 trpA Helicobacter pylori HPAG1 tryptophan synthase subunit alpha YP_627976.1 1297524 D 357544 CDS YP_627977.1 108563661 4098018 1298489..1298776 1 NC_008086.1 hypothetical protein 1298776 4098018 HPAG1_1236 Helicobacter pylori HPAG1 hypothetical protein YP_627977.1 1298489 D 357544 CDS YP_627978.1 108563662 4098019 complement(1299486..1299836) 1 NC_008086.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1299836 rplQ 4098019 rplQ Helicobacter pylori HPAG1 50S ribosomal protein L17 YP_627978.1 1299486 R 357544 CDS YP_627979.1 108563663 4098020 complement(1299836..1300870) 1 NC_008086.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1300870 4098020 HPAG1_1238 Helicobacter pylori HPAG1 DNA-directed RNA polymerase subunit alpha YP_627979.1 1299836 R 357544 CDS YP_627980.1 108563664 4098021 complement(1300882..1301508) 1 NC_008086.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1301508 rpsD 4098021 rpsD Helicobacter pylori HPAG1 30S ribosomal protein S4 YP_627980.1 1300882 R 357544 CDS YP_627981.1 108563665 4098022 complement(1301518..1301913) 1 NC_008086.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1301913 4098022 HPAG1_1240 Helicobacter pylori HPAG1 30S ribosomal protein S11 YP_627981.1 1301518 R 357544 CDS YP_627982.1 108563666 4098023 complement(1301936..1302298) 1 NC_008086.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1302298 rpsM 4098023 rpsM Helicobacter pylori HPAG1 30S ribosomal protein S13 YP_627982.1 1301936 R 357544 CDS YP_627983.1 108563667 4098024 complement(1302302..1302415) 1 NC_008086.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 1302415 rpmJ 4098024 rpmJ Helicobacter pylori HPAG1 50S ribosomal protein L36 YP_627983.1 1302302 R 357544 CDS YP_627984.1 108563668 4098025 complement(1302494..1302712) 1 NC_008086.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1302712 infA 4098025 infA Helicobacter pylori HPAG1 translation initiation factor IF-1 YP_627984.1 1302494 R 357544 CDS YP_627985.1 108563669 4098026 complement(1302712..1303473) 1 NC_008086.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1303473 4098026 HPAG1_1244 Helicobacter pylori HPAG1 methionine aminopeptidase YP_627985.1 1302712 R 357544 CDS YP_627986.1 108563670 4098027 complement(1303473..1304735) 1 NC_008086.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1304735 secY 4098027 secY Helicobacter pylori HPAG1 preprotein translocase subunit SecY YP_627986.1 1303473 R 357544 CDS YP_627987.1 108563671 4098028 complement(1304773..1305180) 1 NC_008086.1 late assembly protein; 50S ribosomal protein L15 1305180 rplO 4098028 rplO Helicobacter pylori HPAG1 50S ribosomal protein L15 YP_627987.1 1304773 R 357544 CDS YP_627988.1 108563672 4098029 complement(1305194..1305655) 1 NC_008086.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1305655 rpsE 4098029 rpsE Helicobacter pylori HPAG1 30S ribosomal protein S5 YP_627988.1 1305194 R 357544 CDS YP_627989.1 108563673 4098030 complement(1305652..1306011) 1 NC_008086.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1306011 rplR 4098030 rplR Helicobacter pylori HPAG1 50S ribosomal protein L18 YP_627989.1 1305652 R 357544 CDS YP_627990.1 108563674 4098031 complement(1306022..1306558) 1 NC_008086.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1306558 rplF 4098031 rplF Helicobacter pylori HPAG1 50S ribosomal protein L6 YP_627990.1 1306022 R 357544 CDS YP_627991.1 108563675 4098032 complement(1306569..1306964) 1 NC_008086.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1306964 rpsH 4098032 rpsH Helicobacter pylori HPAG1 30S ribosomal protein S8 YP_627991.1 1306569 R 357544 CDS YP_627992.1 108563676 4098033 complement(1306974..1307159) 1 NC_008086.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1307159 rpsN 4098033 rpsN Helicobacter pylori HPAG1 30S ribosomal protein S14 YP_627992.1 1306974 R 357544 CDS YP_627993.1 108563677 4098034 complement(1307169..1307714) 1 NC_008086.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1307714 rplE 4098034 rplE Helicobacter pylori HPAG1 50S ribosomal protein L5 YP_627993.1 1307169 R 357544 CDS YP_627994.1 108563678 4098035 complement(1307727..1307948) 1 NC_008086.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1307948 rplX 4098035 rplX Helicobacter pylori HPAG1 50S ribosomal protein L24 YP_627994.1 1307727 R 357544 CDS YP_627995.1 108563679 4098036 complement(1307948..1308316) 1 NC_008086.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1308316 rplN 4098036 rplN Helicobacter pylori HPAG1 50S ribosomal protein L14 YP_627995.1 1307948 R 357544 CDS YP_627996.1 108563680 4098109 complement(1308318..1308578) 1 NC_008086.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1308578 rpsQ 4098109 rpsQ Helicobacter pylori HPAG1 30S ribosomal protein S17 YP_627996.1 1308318 R 357544 CDS YP_627997.1 108563681 4098110 complement(1308592..1308792) 1 NC_008086.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1308792 4098110 HPAG1_1256 Helicobacter pylori HPAG1 50S ribosomal protein L29 YP_627997.1 1308592 R 357544 CDS YP_627998.1 108563682 4098111 complement(1308779..1309204) 1 NC_008086.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1309204 rplP 4098111 rplP Helicobacter pylori HPAG1 50S ribosomal protein L16 YP_627998.1 1308779 R 357544 CDS YP_627999.1 108563683 4098112 complement(1309207..1309911) 1 NC_008086.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1309911 rpsC 4098112 rpsC Helicobacter pylori HPAG1 30S ribosomal protein S3 YP_627999.1 1309207 R 357544 CDS YP_628000.1 108563684 4098113 complement(1309915..1310283) 1 NC_008086.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1310283 rplV 4098113 rplV Helicobacter pylori HPAG1 50S ribosomal protein L22 YP_628000.1 1309915 R 357544 CDS YP_628001.1 108563685 4098114 complement(1310293..1310574) 1 NC_008086.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1310574 rpsS 4098114 rpsS Helicobacter pylori HPAG1 30S ribosomal protein S19 YP_628001.1 1310293 R 357544 CDS YP_628002.1 108563686 4098115 complement(1310586..1311416) 1 NC_008086.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1311416 rplB 4098115 rplB Helicobacter pylori HPAG1 50S ribosomal protein L2 YP_628002.1 1310586 R 357544 CDS YP_628003.1 108563687 4098116 complement(1311433..1311714) 1 NC_008086.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1311714 rplW 4098116 rplW Helicobacter pylori HPAG1 50S ribosomal protein L23 YP_628003.1 1311433 R 357544 CDS YP_628004.1 108563688 4098117 complement(1311718..1312365) 1 NC_008086.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1312365 rplD 4098117 rplD Helicobacter pylori HPAG1 50S ribosomal protein L4 YP_628004.1 1311718 R 357544 CDS YP_628005.1 108563689 4098118 complement(1312400..1312975) 1 NC_008086.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1312975 rplC 4098118 rplC Helicobacter pylori HPAG1 50S ribosomal protein L3 YP_628005.1 1312400 R 357544 CDS YP_628006.1 108563690 4098119 complement(1313012..1313326) 1 NC_008086.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1313326 rpsJ 4098119 rpsJ Helicobacter pylori HPAG1 30S ribosomal protein S10 YP_628006.1 1313012 R 357544 CDS YP_628007.1 108563691 4098120 1313536..1314624 1 NC_008086.1 hypothetical protein 1314624 4098120 HPAG1_1266 Helicobacter pylori HPAG1 hypothetical protein YP_628007.1 1313536 D 357544 CDS YP_628008.1 108563692 4098121 1314928..1315506 1 NC_008086.1 hypothetical protein 1315506 4098121 HPAG1_1267 Helicobacter pylori HPAG1 hypothetical protein YP_628008.1 1314928 D 357544 CDS YP_628009.1 108563693 4098122 complement(1315480..1316094) 1 NC_008086.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1316094 rnhB 4098122 rnhB Helicobacter pylori HPAG1 ribonuclease HII YP_628009.1 1315480 R 357544 CDS YP_628010.1 108563694 4098123 complement(1316186..1316371) 1 NC_008086.1 hypothetical protein 1316371 4098123 HPAG1_1269 Helicobacter pylori HPAG1 hypothetical protein YP_628010.1 1316186 R 357544 CDS YP_628011.1 108563695 4098124 complement(1316393..1317784) 1 NC_008086.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1317784 fumC 4098124 fumC Helicobacter pylori HPAG1 fumarate hydratase YP_628011.1 1316393 R 357544 CDS YP_628012.1 108563696 4098125 1317960..1318337 1 NC_008086.1 hypothetical protein 1318337 4098125 HPAG1_1271 Helicobacter pylori HPAG1 hypothetical protein YP_628012.1 1317960 D 357544 CDS YP_628013.1 108563697 4098126 1318342..1319580 1 NC_008086.1 hypothetical protein 1319580 4098126 HPAG1_1272 Helicobacter pylori HPAG1 hypothetical protein YP_628013.1 1318342 D 357544 CDS YP_628014.1 108563698 4098127 1319577..1320593 1 NC_008086.1 cation efflux system protein 1320593 4098127 HPAG1_1273 Helicobacter pylori HPAG1 cation efflux system protein YP_628014.1 1319577 D 357544 CDS YP_628015.1 108563699 4098221 1320594..1323707 1 NC_008086.1 cation efflux system protein 1323707 4098221 HPAG1_1274 Helicobacter pylori HPAG1 cation efflux system protein YP_628015.1 1320594 D 357544 CDS YP_628016.1 108563700 4098222 complement(1323704..1324051) 1 NC_008086.1 hypothetical protein 1324051 4098222 HPAG1_1275 Helicobacter pylori HPAG1 hypothetical protein YP_628016.1 1323704 R 357544 CDS YP_628017.1 108563701 4098223 complement(1324045..1324731) 1 NC_008086.1 hypothetical protein 1324731 4098223 HPAG1_1276 Helicobacter pylori HPAG1 hypothetical protein YP_628017.1 1324045 R 357544 CDS YP_628018.1 108563702 4098224 complement(1324742..1325851) 1 NC_008086.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1325851 4098224 HPAG1_1277 Helicobacter pylori HPAG1 chaperone protein DnaJ YP_628018.1 1324742 R 357544 CDS YP_628019.1 108563703 4098225 1325976..1327106 1 NC_008086.1 hypothetical protein 1327106 4098225 HPAG1_1278 Helicobacter pylori HPAG1 hypothetical protein YP_628019.1 1325976 D 357544 CDS YP_628020.1 108563704 4098226 1327308..1327550 1 NC_008086.1 hypothetical protein 1327550 4098226 HPAG1_1279 Helicobacter pylori HPAG1 hypothetical protein YP_628020.1 1327308 D 357544 CDS YP_628021.1 108563705 4098227 1327620..1327736 1 NC_008086.1 hypothetical protein 1327736 4098227 HPAG1_1280 Helicobacter pylori HPAG1 hypothetical protein YP_628021.1 1327620 D 357544 CDS YP_628022.1 108563706 4098228 1327807..1327998 1 NC_008086.1 hypothetical protein 1327998 4098228 HPAG1_1281 Helicobacter pylori HPAG1 hypothetical protein YP_628022.1 1327807 D 357544 CDS YP_628023.1 108563707 4098229 complement(1328059..1329120) 1 NC_008086.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1329120 mnmA 4098229 mnmA Helicobacter pylori HPAG1 tRNA-specific 2-thiouridylase MnmA YP_628023.1 1328059 R 357544 CDS YP_628024.1 108563708 4098230 1329229..1329990 1 NC_008086.1 hypothetical protein 1329990 4098230 HPAG1_1283 Helicobacter pylori HPAG1 hypothetical protein YP_628024.1 1329229 D 357544 CDS YP_628025.1 108563709 4098231 complement(1329987..1330511) 1 NC_008086.1 hypothetical protein 1330511 4098231 HPAG1_1284 Helicobacter pylori HPAG1 hypothetical protein YP_628025.1 1329987 R 357544 CDS YP_628026.1 108563710 4098232 complement(1330495..1330941) 1 NC_008086.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 1330941 4098232 HPAG1_1285 Helicobacter pylori HPAG1 nickel responsive regulator YP_628026.1 1330495 R 357544 CDS YP_628027.1 108563711 4098233 1331201..1331701 1 NC_008086.1 biopolymer transport protein 1331701 4098233 HPAG1_1286 Helicobacter pylori HPAG1 biopolymer transport protein YP_628027.1 1331201 D 357544 CDS YP_628028.1 108563712 4098234 1331698..1332087 1 NC_008086.1 biopolymer transport protein 1332087 4098234 HPAG1_1287 Helicobacter pylori HPAG1 biopolymer transport protein YP_628028.1 1331698 D 357544 CDS YP_628029.1 108563713 4098235 1332053..1332910 1 NC_008086.1 siderophore-mediated iron transport protein 1332910 4098235 HPAG1_1288 Helicobacter pylori HPAG1 siderophore-mediated iron transport protein YP_628029.1 1332053 D 357544 CDS YP_628030.1 108563714 4098236 1333105..1335183 1 NC_008086.1 outer membrane protein 1335183 4098236 HPAG1_1289 Helicobacter pylori HPAG1 outer membrane protein YP_628030.1 1333105 D 357544 CDS YP_628031.1 108563715 4098237 complement(1335323..1336051) 1 NC_008086.1 hypothetical protein 1336051 4098237 HPAG1_1290 Helicobacter pylori HPAG1 hypothetical protein YP_628031.1 1335323 R 357544 CDS YP_628032.1 108563716 4098238 complement(1336058..1337014) 1 NC_008086.1 magnesium and cobalt transport protein 1337014 4098238 HPAG1_1291 Helicobacter pylori HPAG1 magnesium and cobalt transport protein YP_628032.1 1336058 R 357544 CDS YP_628033.1 108563717 4098239 complement(1337030..1338238) 1 NC_008086.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1338238 pgk 4098239 pgk Helicobacter pylori HPAG1 phosphoglycerate kinase YP_628033.1 1337030 R 357544 CDS YP_628034.1 108563718 4098240 complement(1338254..1339246) 1 NC_008086.1 glyceraldehyde-3-phosphate dehydrogenase 1339246 4098240 HPAG1_1293 Helicobacter pylori HPAG1 glyceraldehyde-3-phosphate dehydrogenase YP_628034.1 1338254 R 357544 CDS YP_628035.1 108563719 4098442 complement(1339335..1340036) 1 NC_008086.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1340036 4098442 HPAG1_1294 Helicobacter pylori HPAG1 uracil-DNA glycosylase YP_628035.1 1339335 R 357544 CDS YP_628036.1 108563720 4098443 complement(1340033..1340749) 1 NC_008086.1 1-acyl-glycerol-3-phosphate acyltransferase 1340749 4098443 HPAG1_1295 Helicobacter pylori HPAG1 1-acyl-glycerol-3-phosphate acyltransferase YP_628036.1 1340033 R 357544 CDS YP_628037.1 108563721 4098444 complement(1340736..1341851) 1 NC_008086.1 hypothetical protein 1341851 4098444 HPAG1_1296 Helicobacter pylori HPAG1 hypothetical protein YP_628037.1 1340736 R 357544 CDS YP_628038.1 108563722 4098445 complement(1341914..1343293) 1 NC_008086.1 carboxyl-terminal protease 1343293 4098445 HPAG1_1297 Helicobacter pylori HPAG1 carboxyl-terminal protease YP_628038.1 1341914 R 357544 CDS YP_628039.1 108563723 4098446 complement(1343505..1343732) 1 NC_008086.1 type II restriction endonuclease 1343732 4098446 HPAG1_1298 Helicobacter pylori HPAG1 type II restriction endonuclease YP_628039.1 1343505 R 357544 CDS YP_628040.1 108563724 4098447 complement(1343755..1344372) 1 NC_008086.1 hypothetical protein 1344372 4098447 HPAG1_1299 Helicobacter pylori HPAG1 hypothetical protein YP_628040.1 1343755 R 357544 CDS YP_628041.1 108563725 4098448 complement(1344372..1345451) 1 NC_008086.1 adenine specific DNA methyltransferase 1345451 4098448 HPAG1_1300 Helicobacter pylori HPAG1 adenine specific DNA methyltransferase YP_628041.1 1344372 R 357544 CDS YP_628042.1 108563726 4098449 complement(1345571..1349176) 1 NC_008086.1 adenine specific DNA methyltransferase 1349176 4098449 HPAG1_1301 Helicobacter pylori HPAG1 adenine specific DNA methyltransferase YP_628042.1 1345571 R 357544 CDS YP_628043.1 108563727 4098450 complement(1349202..1350023) 1 NC_008086.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1350023 4098450 HPAG1_1302 Helicobacter pylori HPAG1 nicotinate-nucleotide pyrophosphorylase YP_628043.1 1349202 R 357544 CDS YP_628044.1 108563728 4098451 complement(1350023..1351033) 1 NC_008086.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1351033 4098451 HPAG1_1303 Helicobacter pylori HPAG1 quinolinate synthetase YP_628044.1 1350023 R 357544 CDS YP_628045.1 108563729 4098452 complement(1351023..1351826) 1 NC_008086.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1351826 4098452 HPAG1_1304 Helicobacter pylori HPAG1 phosphatidylserine decarboxylase YP_628045.1 1351023 R 357544 CDS YP_628046.1 108563730 4098453 complement(1351820..1352326) 1 NC_008086.1 hypothetical protein 1352326 4098453 HPAG1_1305 Helicobacter pylori HPAG1 hypothetical protein YP_628046.1 1351820 R 357544 CDS YP_628047.1 108563731 4098454 complement(1352339..1352890) 1 NC_008086.1 hypothetical protein 1352890 4098454 HPAG1_1306 Helicobacter pylori HPAG1 hypothetical protein YP_628047.1 1352339 R 357544 CDS YP_628048.1 108563732 4098455 complement(1352826..1353710) 1 NC_008086.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 1353710 ubiA 4098455 ubiA Helicobacter pylori HPAG1 prenyltransferase YP_628048.1 1352826 R 357544 CDS YP_628049.1 108563733 4098456 complement(1353739..1355052) 1 NC_008086.1 competence locus E 1355052 4098456 HPAG1_1308 Helicobacter pylori HPAG1 competence locus E YP_628049.1 1353739 R 357544 CDS YP_628050.1 108563734 4098457 complement(1355049..1356515) 1 NC_008086.1 unwinds double stranded DNA; replicative DNA helicase 1356515 4098457 HPAG1_1309 Helicobacter pylori HPAG1 replicative DNA helicase YP_628050.1 1355049 R 357544 CDS YP_628051.1 108563735 4098458 complement(1356526..1357920) 1 NC_008086.1 hypothetical protein 1357920 4098458 HPAG1_1310 Helicobacter pylori HPAG1 hypothetical protein YP_628051.1 1356526 R 357544 CDS YP_628052.1 108563736 4098459 complement(1357923..1359041) 1 NC_008086.1 putative histidine kinase sensor protein 1359041 4098459 HPAG1_1311 Helicobacter pylori HPAG1 putative histidine kinase sensor protein YP_628052.1 1357923 R 357544 CDS YP_628053.1 108563737 4098460 complement(1359091..1359732) 1 NC_008086.1 response regulator 1359732 4098460 HPAG1_1312 Helicobacter pylori HPAG1 response regulator YP_628053.1 1359091 R 357544 CDS YP_628054.1 108563738 4097997 1359803..1361227 1 NC_008086.1 type III restriction enzyme M protein 1361227 4097997 HPAG1_1313 Helicobacter pylori HPAG1 type III restriction enzyme M protein YP_628054.1 1359803 D 357544 CDS YP_628055.1 108563739 4097998 1361166..1362269 1 NC_008086.1 adenine-specific DNA methylase 1362269 4097998 HPAG1_1314 Helicobacter pylori HPAG1 adenine-specific DNA methylase YP_628055.1 1361166 D 357544 CDS YP_628056.1 108563740 4097999 1362280..1364655 1 NC_008086.1 type III restriction enzyme R protein 1364655 4097999 HPAG1_1315 Helicobacter pylori HPAG1 type III restriction enzyme R protein YP_628056.1 1362280 D 357544 CDS YP_628057.1 108563741 4098000 1364755..1365189 1 NC_008086.1 type III restriction enzyme R protein 1365189 4098000 HPAG1_1316 Helicobacter pylori HPAG1 type III restriction enzyme R protein YP_628057.1 1364755 D 357544 CDS YP_628058.1 108563742 4098001 complement(1365241..1365987) 1 NC_008086.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1365987 4098001 HPAG1_1317 Helicobacter pylori HPAG1 rod shape-determining protein MreC YP_628058.1 1365241 R 357544 CDS YP_628059.1 108563743 4098002 complement(1365991..1367034) 1 NC_008086.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1367034 4098002 HPAG1_1318 Helicobacter pylori HPAG1 rod shape-determining protein MreB YP_628059.1 1365991 R 357544 CDS YP_628060.1 108563744 4098003 complement(1367077..1368000) 1 NC_008086.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1368000 clpX 4098003 clpX Helicobacter pylori HPAG1 ATP-dependent protease ATP-binding subunit ClpX YP_628060.1 1367077 R 357544 CDS YP_628061.1 108563745 4098004 complement(1368012..1368422) 1 NC_008086.1 ATP-dependent protease ATPase subunit 1368422 4098004 HPAG1_1320 Helicobacter pylori HPAG1 ATP-dependent protease ATPase subunit YP_628061.1 1368012 R 357544 CDS YP_628062.1 108563746 4098005 complement(1368424..1369236) 1 NC_008086.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1369236 4098005 HPAG1_1321 Helicobacter pylori HPAG1 UDP-N-acetylglucosamine acyltransferase YP_628062.1 1368424 R 357544 CDS YP_628063.1 108563747 4098006 complement(1369239..1369718) 1 NC_008086.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1369718 fabZ 4098006 fabZ Helicobacter pylori HPAG1 (3R)-hydroxymyristoyl-ACP dehydratase YP_628063.1 1369239 R 357544 CDS YP_628064.2 161984736 4098007 complement(1369900..1370289) 1 NC_008086.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1370289 4098007 HPAG1_1323 Helicobacter pylori HPAG1 flagellar assembly protein FliW YP_628064.2 1369900 R 357544 CDS YP_628065.1 108563749 4098008 1370709..1371371 1 NC_008086.1 competence lipoprotein 1371371 4098008 HPAG1_1324 Helicobacter pylori HPAG1 competence lipoprotein YP_628065.1 1370709 D 357544 CDS YP_628066.1 108563750 4098009 1371413..1373917 1 NC_008086.1 ATP-dependent protease 1373917 4098009 HPAG1_1325 Helicobacter pylori HPAG1 ATP-dependent protease YP_628066.1 1371413 D 357544 CDS YP_628067.1 108563751 4098010 1373914..1374753 1 NC_008086.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1374753 4098010 HPAG1_1326 Helicobacter pylori HPAG1 prephenate dehydrogenase YP_628067.1 1373914 D 357544 CDS YP_628068.1 108563752 4098011 complement(1374956..1375819) 1 NC_008086.1 putative endonuclease G 1375819 4098011 HPAG1_1327 Helicobacter pylori HPAG1 putative endonuclease G YP_628068.1 1374956 R 357544 CDS YP_628069.1 108563753 4098012 complement(1375931..1377640) 1 NC_008086.1 putative type III restriction enzyme M protein 1377640 4098012 HPAG1_1328 Helicobacter pylori HPAG1 putative type III restriction enzyme M protein YP_628069.1 1375931 R 357544 CDS YP_628070.1 108563754 4098013 complement(1377643..1380255) 1 NC_008086.1 putative type III restriction enzyme R protein 1380255 4098013 HPAG1_1329 Helicobacter pylori HPAG1 putative type III restriction enzyme R protein YP_628070.1 1377643 R 357544 CDS YP_628071.1 108563755 4098014 1380386..1381234 1 NC_008086.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1381234 4098014 HPAG1_1330 Helicobacter pylori HPAG1 biotin synthase YP_628071.1 1380386 D 357544 CDS YP_628072.1 108563756 4098015 1381234..1382112 1 NC_008086.1 putative ribonuclease N 1382112 4098015 HPAG1_1331 Helicobacter pylori HPAG1 putative ribonuclease N YP_628072.1 1381234 D 357544 CDS YP_628073.1 108563757 4098016 complement(1382139..1382348) 1 NC_008086.1 hypothetical protein 1382348 4098016 HPAG1_1332 Helicobacter pylori HPAG1 hypothetical protein YP_628073.1 1382139 R 357544 CDS YP_628074.1 108563758 4098128 complement(1382436..1382618) 1 NC_008086.1 hypothetical protein 1382618 4098128 HPAG1_1333 Helicobacter pylori HPAG1 hypothetical protein YP_628074.1 1382436 R 357544 CDS YP_628075.1 108563759 4098131 1386644..1386910 1 NC_008086.1 hypothetical protein 1386910 4098131 HPAG1_1334 Helicobacter pylori HPAG1 hypothetical protein YP_628075.1 1386644 D 357544 CDS YP_628076.1 108563760 4098132 1387305..1387745 1 NC_008086.1 hypothetical protein 1387745 4098132 HPAG1_1335 Helicobacter pylori HPAG1 hypothetical protein YP_628076.1 1387305 D 357544 CDS YP_628077.1 108563761 4098133 1387792..1389624 1 NC_008086.1 hypothetical protein 1389624 4098133 HPAG1_1336 Helicobacter pylori HPAG1 hypothetical protein YP_628077.1 1387792 D 357544 CDS YP_628078.1 108563762 4098134 1389775..1390020 1 NC_008086.1 hypothetical protein 1390020 4098134 HPAG1_1337 Helicobacter pylori HPAG1 hypothetical protein YP_628078.1 1389775 D 357544 CDS YP_628079.1 108563763 4098135 1389968..1390684 1 NC_008086.1 hypothetical protein 1390684 4098135 HPAG1_1338 Helicobacter pylori HPAG1 hypothetical protein YP_628079.1 1389968 D 357544 CDS YP_628080.1 108563764 4098136 complement(1390802..1391248) 1 NC_008086.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1391248 4098136 HPAG1_1339 Helicobacter pylori HPAG1 7-cyano-7-deazaguanine reductase YP_628080.1 1390802 R 357544 CDS YP_628081.1 108563765 4098137 1391308..1391649 1 NC_008086.1 hypothetical protein 1391649 4098137 HPAG1_1340 Helicobacter pylori HPAG1 hypothetical protein YP_628081.1 1391308 D 357544 CDS YP_628082.1 108563766 4098138 1391720..1392550 1 NC_008086.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1392550 miaA 4098138 miaA Helicobacter pylori HPAG1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_628082.1 1391720 D 357544 CDS YP_628083.1 108563767 4098139 1392555..1393658 1 NC_008086.1 lipopolysaccharide 1,2-glucosyltransferase 1393658 4098139 HPAG1_1342 Helicobacter pylori HPAG1 lipopolysaccharide 1,2-glucosyltransferase YP_628083.1 1392555 D 357544 CDS YP_628084.1 108563768 4098140 1393668..1395293 1 NC_008086.1 hypothetical protein 1395293 4098140 HPAG1_1343 Helicobacter pylori HPAG1 hypothetical protein YP_628084.1 1393668 D 357544 CDS YP_628085.1 108563769 4098141 complement(1395353..1396132) 1 NC_008086.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1396132 murB 4098141 murB Helicobacter pylori HPAG1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_628085.1 1395353 R 357544 CDS YP_628086.1 108563770 4098142 complement(1396136..1396402) 1 NC_008086.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1396402 fliQ 4098142 fliQ Helicobacter pylori HPAG1 flagellar biosynthesis protein FliQ YP_628086.1 1396136 R 357544 CDS YP_628087.1 108563771 4098143 complement(1396413..1397717) 1 NC_008086.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1397717 fliI 4098143 fliI Helicobacter pylori HPAG1 flagellum-specific ATP synthase YP_628087.1 1396413 R 357544 CDS YP_628088.1 108563772 4098144 complement(1397718..1398632) 1 NC_008086.1 type IV secretion system ATPase 1398632 4098144 HPAG1_1347 Helicobacter pylori HPAG1 type IV secretion system ATPase YP_628088.1 1397718 R 357544 CDS YP_628089.1 108563773 4098165 complement(1398649..1401411) 1 NC_008086.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1401411 ileS 4098165 ileS Helicobacter pylori HPAG1 isoleucyl-tRNA synthetase YP_628089.1 1398649 R 357544 CDS YP_628090.1 108563774 4098166 complement(1401435..1401692) 1 NC_008086.1 hypothetical protein 1401692 4098166 HPAG1_1349 Helicobacter pylori HPAG1 hypothetical protein YP_628090.1 1401435 R 357544 CDS YP_628091.1 108563775 4098167 1401794..1402414 1 NC_008086.1 hypothetical protein 1402414 4098167 HPAG1_1350 Helicobacter pylori HPAG1 hypothetical protein YP_628091.1 1401794 D 357544 CDS YP_628092.1 108563776 4098168 complement(1402541..1403422) 1 NC_008086.1 hypothetical protein 1403422 4098168 HPAG1_1351 Helicobacter pylori HPAG1 hypothetical protein YP_628092.1 1402541 R 357544 CDS YP_628093.1 108563777 4098169 complement(1403707..1403889) 1 NC_008086.1 histidine-rich metal binding polypeptide 1403889 4098169 HPAG1_1352 Helicobacter pylori HPAG1 histidine-rich metal binding polypeptide YP_628093.1 1403707 R 357544 CDS YP_628094.1 108563778 4098170 complement(1404085..1405158) 1 NC_008086.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1405158 4098170 HPAG1_1353 Helicobacter pylori HPAG1 ribosomal RNA large subunit methyltransferase N YP_628094.1 1404085 R 357544 CDS YP_628095.1 108563779 4098171 complement(1405155..1406144) 1 NC_008086.1 polysialic acid capsule expression protein 1406144 4098171 HPAG1_1354 Helicobacter pylori HPAG1 polysialic acid capsule expression protein YP_628095.1 1405155 R 357544 CDS YP_628096.1 108563780 4098172 complement(1406128..1408203) 1 NC_008086.1 ATP/GTP binding protein 1408203 4098172 HPAG1_1355 Helicobacter pylori HPAG1 ATP/GTP binding protein YP_628096.1 1406128 R 357544 CDS YP_628097.1 108563781 4098173 complement(1408241..1409056) 1 NC_008086.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1409056 ksgA 4098173 ksgA Helicobacter pylori HPAG1 dimethyladenosine transferase YP_628097.1 1408241 R 357544 CDS YP_628098.1 108563782 4098174 1409310..1409522 1 NC_008086.1 histidine and glutamine-rich metal binding protein 1409522 4098174 HPAG1_1357 Helicobacter pylori HPAG1 histidine and glutamine-rich metal binding protein YP_628098.1 1409310 D 357544 CDS YP_628099.1 108563783 4098175 1409851..1409943 1 NC_008086.1 hypothetical protein 1409943 4098175 HPAG1_1358 Helicobacter pylori HPAG1 hypothetical protein YP_628099.1 1409851 D 357544 CDS YP_628100.1 108563784 4098176 complement(1410157..1412718) 1 NC_008086.1 hypothetical protein 1412718 4098176 HPAG1_1359 Helicobacter pylori HPAG1 hypothetical protein YP_628100.1 1410157 R 357544 CDS YP_628101.1 108563785 4098177 complement(1412719..1413600) 1 NC_008086.1 formyltetrahydrofolate hydrolase 1413600 4098177 HPAG1_1360 Helicobacter pylori HPAG1 formyltetrahydrofolate hydrolase YP_628101.1 1412719 R 357544 CDS YP_628102.1 108563786 4098178 complement(1413603..1414481) 1 NC_008086.1 signal peptide protease IV 1414481 4098178 HPAG1_1361 Helicobacter pylori HPAG1 signal peptide protease IV YP_628102.1 1413603 R 357544 CDS YP_628103.1 108563787 4098179 1414553..1414813 1 NC_008086.1 hypothetical protein 1414813 4098179 HPAG1_1362 Helicobacter pylori HPAG1 hypothetical protein YP_628103.1 1414553 D 357544 CDS YP_628104.1 108563788 4098180 1415052..1415780 1 NC_008086.1 hypothetical protein 1415780 4098180 HPAG1_1363 Helicobacter pylori HPAG1 hypothetical protein YP_628104.1 1415052 D 357544 CDS YP_628105.1 108563789 4098181 1415832..1416953 1 NC_008086.1 lipoprotein 1416953 4098181 HPAG1_1364 Helicobacter pylori HPAG1 lipoprotein YP_628105.1 1415832 D 357544 CDS YP_628106.1 108563790 4098182 1416979..1417404 1 NC_008086.1 hypothetical protein 1417404 4098182 HPAG1_1365 Helicobacter pylori HPAG1 hypothetical protein YP_628106.1 1416979 D 357544 CDS YP_628107.1 108563791 4098037 complement(1419927..1420712) 1 NC_008086.1 hypothetical protein 1420712 4098037 HPAG1_1366 Helicobacter pylori HPAG1 hypothetical protein YP_628107.1 1419927 R 357544 CDS YP_628108.1 108563792 4098038 1420827..1421318 1 NC_008086.1 peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase 1421318 4098038 HPAG1_1367 Helicobacter pylori HPAG1 peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase YP_628108.1 1420827 D 357544 CDS YP_628109.1 108563793 4098039 1421337..1421567 1 NC_008086.1 affects carbohydrate metabolism, has regulatory role in many processes; carbon storage regulator 1421567 4098039 HPAG1_1368 Helicobacter pylori HPAG1 carbon storage regulator YP_628109.1 1421337 D 357544 CDS YP_628110.1 108563794 4098040 1421564..1422388 1 NC_008086.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1422388 4098040 HPAG1_1369 Helicobacter pylori HPAG1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_628110.1 1421564 D 357544 CDS YP_628111.1 108563795 4098041 1422366..1422824 1 NC_008086.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1422824 smpB 4098041 smpB Helicobacter pylori HPAG1 SsrA-binding protein YP_628111.1 1422366 D 357544 CDS YP_628112.1 108563796 4098042 1422827..1423279 1 NC_008086.1 biopolymer transport protein 1423279 4098042 HPAG1_1371 Helicobacter pylori HPAG1 biopolymer transport protein YP_628112.1 1422827 D 357544 CDS YP_628113.1 108563797 4098043 1423290..1423691 1 NC_008086.1 biopolymer transport protein 1423691 4098043 HPAG1_1372 Helicobacter pylori HPAG1 biopolymer transport protein YP_628113.1 1423290 D 357544 CDS YP_628114.1 108563798 4098044 1423763..1423897 1 NC_008086.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1423897 rpmH 4098044 rpmH Helicobacter pylori HPAG1 50S ribosomal protein L34 YP_628114.1 1423763 D 357544 CDS YP_628115.1 108563799 4098045 1423857..1424357 1 NC_008086.1 ribonuclease P, protein component 1424357 4098045 HPAG1_1374 Helicobacter pylori HPAG1 ribonuclease P, protein component YP_628115.1 1423857 D 357544 CDS YP_628116.1 108563800 4098046 1424330..1424686 1 NC_008086.1 hypothetical protein 1424686 4098046 HPAG1_1375 Helicobacter pylori HPAG1 hypothetical protein YP_628116.1 1424330 D 357544 CDS YP_628117.1 108563801 4098047 1424692..1426338 1 NC_008086.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 1426338 4098047 HPAG1_1376 Helicobacter pylori HPAG1 putative inner membrane protein translocase component YidC YP_628117.1 1424692 D 357544 CDS YP_628118.1 108563802 4098048 1426338..1427144 1 NC_008086.1 hypothetical protein 1427144 4098048 HPAG1_1377 Helicobacter pylori HPAG1 hypothetical protein YP_628118.1 1426338 D 357544 CDS YP_628119.1 108563803 4098049 1427104..1428489 1 NC_008086.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1428489 trmE 4098049 trmE Helicobacter pylori HPAG1 tRNA modification GTPase TrmE YP_628119.1 1427104 D 357544 CDS YP_628120.1 108563804 4098050 1428703..1430943 1 NC_008086.1 outer membrane protein HomD 1430943 4098050 HPAG1_1379 Helicobacter pylori HPAG1 outer membrane protein HomD YP_628120.1 1428703 D 357544 CDS YP_628121.1 108563805 4098051 complement(1431072..1431218) 1 NC_008086.1 hypothetical protein 1431218 4098051 HPAG1_1380 Helicobacter pylori HPAG1 hypothetical protein YP_628121.1 1431072 R 357544 CDS YP_628122.1 108563806 4098052 1431375..1431626 1 NC_008086.1 MobC-like protein 1431626 4098052 HPAG1_1381 Helicobacter pylori HPAG1 MobC-like protein YP_628122.1 1431375 D 357544 CDS YP_628123.1 108563807 4098053 1431707..1432237 1 NC_008086.1 cagY like protein 1432237 4098053 HPAG1_1382 Helicobacter pylori HPAG1 cagY like protein YP_628123.1 1431707 D 357544 CDS YP_628124.1 108563808 4098054 complement(1432271..1432897) 1 NC_008086.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 1432897 thyX 4098054 thyX Helicobacter pylori HPAG1 FAD-dependent thymidylate synthase YP_628124.1 1432271 R 357544 CDS YP_628125.1 108563809 4098055 complement(1432919..1434712) 1 NC_008086.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1434712 4098055 HPAG1_1384 Helicobacter pylori HPAG1 glucosamine--fructose-6-phosphate aminotransferase YP_628125.1 1432919 R 357544 CDS YP_628126.1 108563810 4099079 complement(1434713..1434952) 1 NC_008086.1 hypothetical protein 1434952 4099079 HPAG1_1385 Helicobacter pylori HPAG1 hypothetical protein YP_628126.1 1434713 R 357544 CDS YP_628127.1 108563811 4099080 complement(1434995..1435537) 1 NC_008086.1 purine nucleoside phosphorylase 1435537 4099080 HPAG1_1386 Helicobacter pylori HPAG1 purine nucleoside phosphorylase YP_628127.1 1434995 R 357544 CDS YP_628128.1 108563812 4099081 1435690..1437057 1 NC_008086.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1437057 dnaA 4099081 dnaA Helicobacter pylori HPAG1 chromosomal replication initiation protein YP_628128.1 1435690 D 357544 CDS YP_628129.1 108563813 4099082 1437278..1438717 1 NC_008086.1 hypothetical protein 1438717 4099082 HPAG1_1388 Helicobacter pylori HPAG1 hypothetical protein YP_628129.1 1437278 D 357544 CDS YP_628130.1 108563814 4099084 1438897..1439649 1 NC_008086.1 AP endonuclease xth family; multifunctional DNA repair protein; has AP endonuclease, 3'-5' exonuclease, ribonuclease H, and 3'-phosphomonoesterase activities.; exodeoxyribonuclease III 1439649 4099084 HPAG1_1389 Helicobacter pylori HPAG1 exodeoxyribonuclease III YP_628130.1 1438897 D 357544 CDS YP_628131.1 108563815 4099085 complement(1439646..1440281) 1 NC_008086.1 hypothetical protein 1440281 4099085 HPAG1_1390 Helicobacter pylori HPAG1 hypothetical protein YP_628131.1 1439646 R 357544 CDS YP_628132.1 108563816 4099086 complement(1440285..1440632) 1 NC_008086.1 hypothetical protein 1440632 4099086 HPAG1_1391 Helicobacter pylori HPAG1 hypothetical protein YP_628132.1 1440285 R 357544 CDS YP_628133.1 108563817 4099087 1440714..1442585 1 NC_008086.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1442585 4099087 HPAG1_1392 Helicobacter pylori HPAG1 ATP-dependent DNA helicase RecG YP_628133.1 1440714 D 357544 CDS YP_628134.1 108563818 4099088 1442641..1444605 1 NC_008086.1 type III R-M system modification enzyme 1444605 4099088 HPAG1_1393 Helicobacter pylori HPAG1 type III R-M system modification enzyme YP_628134.1 1442641 D 357544 CDS YP_628135.1 108563819 4099089 1444608..1447508 1 NC_008086.1 type III R-M system restriction enzyme 1447508 4099089 HPAG1_1394 Helicobacter pylori HPAG1 type III R-M system restriction enzyme YP_628135.1 1444608 D 357544 CDS YP_628136.1 108563820 4099090 1447627..1451385 1 NC_008086.1 type IIS restriction-modification protein 1451385 4099090 HPAG1_1395 Helicobacter pylori HPAG1 type IIS restriction-modification protein YP_628136.1 1447627 D 357544 CDS YP_628137.1 108563821 4099091 complement(1451445..1451537) 1 NC_008086.1 hypothetical protein 1451537 4099091 HPAG1_1396 Helicobacter pylori HPAG1 hypothetical protein YP_628137.1 1451445 R 357544 CDS YP_628138.1 108563822 4099092 complement(1451939..1452622) 1 NC_008086.1 hypothetical protein 1452622 4099092 HPAG1_1397 Helicobacter pylori HPAG1 hypothetical protein YP_628138.1 1451939 R 357544 CDS YP_628139.1 108563823 4099093 complement(1452679..1453866) 1 NC_008086.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1453866 nusA 4099093 nusA Helicobacter pylori HPAG1 transcription elongation factor NusA YP_628139.1 1452679 R 357544 CDS YP_628140.1 108563824 4099094 complement(1453968..1455128) 1 NC_008086.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1455128 4099094 HPAG1_1399 Helicobacter pylori HPAG1 selenocysteine synthase YP_628140.1 1453968 R 357544 CDS YP_628141.1 108563825 4099095 complement(1455355..1457946) 1 NC_008086.1 iron-regulated outer membrane protein 1457946 4099095 HPAG1_1400 Helicobacter pylori HPAG1 iron-regulated outer membrane protein YP_628141.1 1455355 R 357544 CDS YP_628142.1 108563826 4099096 complement(1458099..1458425) 1 NC_008086.1 hypothetical protein 1458425 4099096 HPAG1_1401 Helicobacter pylori HPAG1 hypothetical protein YP_628142.1 1458099 R 357544 CDS YP_628143.1 108563827 4099097 complement(1458409..1458762) 1 NC_008086.1 dihydroneopterin aldolase 1458762 4099097 HPAG1_1402 Helicobacter pylori HPAG1 dihydroneopterin aldolase YP_628143.1 1458409 R 357544 CDS YP_628144.1 108563829 4098481 complement(1458759..1459547) 1 NC_008086.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1459547 4098481 HPAG1_1403 Helicobacter pylori HPAG1 putative glycerol-3-phosphate acyltransferase PlsY YP_628144.1 1458759 R 357544 CDS YP_628145.1 108563828 4098480 1459527..1460903 1 NC_008086.1 ferrodoxin-like protein 1460903 4098480 HPAG1_1404 Helicobacter pylori HPAG1 ferrodoxin-like protein YP_628145.1 1459527 D 357544 CDS YP_628146.1 108563830 4098482 complement(1460913..1462112) 1 NC_008086.1 hypothetical protein 1462112 4098482 HPAG1_1405 Helicobacter pylori HPAG1 hypothetical protein YP_628146.1 1460913 R 357544 CDS YP_628147.1 108563831 4098483 1462198..1463424 1 NC_008086.1 sodium/glutamate symport carrier protein/glutamate permease 1463424 4098483 HPAG1_1406 Helicobacter pylori HPAG1 sodium/glutamate symport carrier protein/glutamate permease YP_628147.1 1462198 D 357544 CDS YP_628148.1 108563832 4098484 1463421..1464455 1 NC_008086.1 riboflavin biosynthesis protein 1464455 4098484 HPAG1_1407 Helicobacter pylori HPAG1 riboflavin biosynthesis protein YP_628148.1 1463421 D 357544 CDS YP_628149.1 108563833 4098485 1464437..1465153 1 NC_008086.1 hypothetical protein 1465153 4098485 HPAG1_1408 Helicobacter pylori HPAG1 hypothetical protein YP_628149.1 1464437 D 357544 CDS YP_628150.1 108563834 4098486 1465178..1467544 1 NC_008086.1 putative cation transporting P-type ATPase 1467544 4098486 HPAG1_1409 Helicobacter pylori HPAG1 putative cation transporting P-type ATPase YP_628150.1 1465178 D 357544 CDS YP_628151.1 108563835 4098487 complement(1467541..1467978) 1 NC_008086.1 hypothetical protein 1467978 4098487 HPAG1_1410 Helicobacter pylori HPAG1 hypothetical protein YP_628151.1 1467541 R 357544 CDS YP_628152.1 108563836 4098488 1468158..1469324 1 NC_008086.1 outer membrane protein HopK 1469324 4098488 HPAG1_1411 Helicobacter pylori HPAG1 outer membrane protein HopK YP_628152.1 1468158 D 357544 CDS YP_628153.1 108563837 4098489 complement(1469402..1470982) 1 NC_008086.1 restriction endonuclease 1470982 4098489 HPAG1_1412 Helicobacter pylori HPAG1 restriction endonuclease YP_628153.1 1469402 R 357544 CDS YP_628154.1 108563838 4098490 complement(1470989..1471888) 1 NC_008086.1 type II adenine specific DNA methyltransferase 1471888 4098490 HPAG1_1413 Helicobacter pylori HPAG1 type II adenine specific DNA methyltransferase YP_628154.1 1470989 R 357544 CDS YP_628155.1 108563839 4098491 complement(1471885..1472886) 1 NC_008086.1 type II methylase 1472886 4098491 HPAG1_1414 Helicobacter pylori HPAG1 type II methylase YP_628155.1 1471885 R 357544 CDS YP_628156.1 108563840 4098492 complement(1472943..1474010) 1 NC_008086.1 hypothetical protein 1474010 4098492 HPAG1_1415 Helicobacter pylori HPAG1 hypothetical protein YP_628156.1 1472943 R 357544 CDS YP_628157.1 108563841 4098493 complement(1474065..1474625) 1 NC_008086.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1474625 4098493 HPAG1_1416 Helicobacter pylori HPAG1 peptidyl-tRNA hydrolase YP_628157.1 1474065 R 357544 CDS YP_628158.1 108563842 4098494 complement(1474635..1475171) 1 NC_008086.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1475171 4098494 HPAG1_1417 Helicobacter pylori HPAG1 50S ribosomal protein L25/general stress protein Ctc YP_628158.1 1474635 R 357544 CDS YP_628159.1 108563843 4098495 complement(1475226..1476176) 1 NC_008086.1 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 1476176 4098495 HPAG1_1418 Helicobacter pylori HPAG1 transaldolase YP_628159.1 1475226 R 357544 CDS YP_628160.1 108563844 4098496 complement(1476180..1477523) 1 NC_008086.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1477523 murE 4098496 murE Helicobacter pylori HPAG1 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_628160.1 1476180 R 357544 CDS YP_628161.1 108563845 4098497 complement(1477527..1478138) 1 NC_008086.1 hypothetical protein 1478138 4098497 HPAG1_1420 Helicobacter pylori HPAG1 hypothetical protein YP_628161.1 1477527 R 357544 CDS YP_628162.1 108563846 4098498 complement(1478150..1478419) 1 NC_008086.1 NifU-like protein 1478419 4098498 HPAG1_1421 Helicobacter pylori HPAG1 NifU-like protein YP_628162.1 1478150 R 357544 CDS YP_628163.1 108563847 4099117 1478558..1480159 1 NC_008086.1 phosphate permease 1480159 4099117 HPAG1_1422 Helicobacter pylori HPAG1 phosphate permease YP_628163.1 1478558 D 357544 CDS YP_628164.1 108563848 4099118 1480267..1481604 1 NC_008086.1 hemolysin domain-containing protein 1481604 4099118 HPAG1_1423 Helicobacter pylori HPAG1 hemolysin domain-containing protein YP_628164.1 1480267 D 357544 CDS YP_628165.1 108563849 4099119 1481620..1483152 1 NC_008086.1 lipase-like protein 1483152 4099119 HPAG1_1424 Helicobacter pylori HPAG1 lipase-like protein YP_628165.1 1481620 D 357544 CDS YP_628166.1 108563850 4099120 1483164..1484153 1 NC_008086.1 hypothetical protein 1484153 4099120 HPAG1_1425 Helicobacter pylori HPAG1 hypothetical protein YP_628166.1 1483164 D 357544 CDS YP_628167.1 108563851 4099121 1484165..1485262 1 NC_008086.1 hypothetical protein 1485262 4099121 HPAG1_1426 Helicobacter pylori HPAG1 hypothetical protein YP_628167.1 1484165 D 357544 CDS YP_628168.1 108563852 4099122 1485259..1486389 1 NC_008086.1 hypothetical protein 1486389 4099122 HPAG1_1427 Helicobacter pylori HPAG1 hypothetical protein YP_628168.1 1485259 D 357544 CDS YP_628169.1 108563853 4099123 1486376..1486948 1 NC_008086.1 hypothetical protein 1486948 4099123 HPAG1_1428 Helicobacter pylori HPAG1 hypothetical protein YP_628169.1 1486376 D 357544 CDS YP_628170.1 108563854 4099124 1486959..1487405 1 NC_008086.1 hypothetical protein 1487405 4099124 HPAG1_1429 Helicobacter pylori HPAG1 hypothetical protein YP_628170.1 1486959 D 357544 CDS YP_628171.1 108563855 4099125 1487432..1488163 1 NC_008086.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1488163 ubiE 4099125 ubiE Helicobacter pylori HPAG1 ubiquinone/menaquinone biosynthesis methyltransferase YP_628171.1 1487432 D 357544 CDS YP_628172.1 108563856 4099126 1488173..1488433 1 NC_008086.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1488433 4099126 HPAG1_1431 Helicobacter pylori HPAG1 exodeoxyribonuclease VII small subunit YP_628172.1 1488173 D 357544 CDS YP_628173.1 108563857 4099127 1488437..1489234 1 NC_008086.1 hypothetical protein 1489234 4099127 HPAG1_1432 Helicobacter pylori HPAG1 hypothetical protein YP_628173.1 1488437 D 357544 CDS YP_628174.1 108563858 4099128 1489235..1490482 1 NC_008086.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1490482 4099128 HPAG1_1433 Helicobacter pylori HPAG1 seryl-tRNA synthetase YP_628174.1 1489235 D 357544 CDS YP_628175.1 108563859 4099129 1490492..1493026 1 NC_008086.1 hypothetical protein 1493026 4099129 HPAG1_1434 Helicobacter pylori HPAG1 hypothetical protein YP_628175.1 1490492 D 357544 CDS YP_628176.1 108563860 4099130 1493023..1495071 1 NC_008086.1 DNA helicase II 1495071 4099130 HPAG1_1435 Helicobacter pylori HPAG1 DNA helicase II YP_628176.1 1493023 D 357544 CDS YP_628177.1 108563861 4099131 1495068..1495724 1 NC_008086.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1495724 flgA 4099131 flgA Helicobacter pylori HPAG1 flagellar basal body P-ring biosynthesis protein FlgA YP_628177.1 1495068 D 357544 CDS YP_628178.1 108563862 4099132 1495734..1496297 1 NC_008086.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1496297 4099132 HPAG1_1437 Helicobacter pylori HPAG1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_628178.1 1495734 D 357544 CDS YP_628179.1 108563863 4099133 1496297..1496770 1 NC_008086.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1496770 coaD 4099133 coaD Helicobacter pylori HPAG1 phosphopantetheine adenylyltransferase YP_628179.1 1496297 D 357544 CDS YP_628180.1 108563864 4099134 1496772..1497347 1 NC_008086.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1497347 tmk 4099134 tmk Helicobacter pylori HPAG1 thymidylate kinase YP_628180.1 1496772 D 357544 CDS YP_628181.1 108563865 4099135 1497335..1497910 1 NC_008086.1 hypothetical protein 1497910 4099135 HPAG1_1440 Helicobacter pylori HPAG1 hypothetical protein YP_628181.1 1497335 D 357544 CDS YP_628182.1 108563866 4099136 1497943..1499154 1 NC_008086.1 restriction enzyme BcgI alpha chain-like protein 1499154 4099136 HPAG1_1441 Helicobacter pylori HPAG1 restriction enzyme BcgI alpha chain-like protein YP_628182.1 1497943 D 357544 CDS YP_628183.1 108563867 4098614 1499138..1499542 1 NC_008086.1 restriction enzyme BcgI alpha chain-like protein 1499542 4098614 HPAG1_1442 Helicobacter pylori HPAG1 restriction enzyme BcgI alpha chain-like protein YP_628183.1 1499138 D 357544 CDS YP_628184.1 108563868 4098615 1499554..1499982 1 NC_008086.1 restriction enzyme BcgI alpha chain-like protein 1499982 4098615 HPAG1_1443 Helicobacter pylori HPAG1 restriction enzyme BcgI alpha chain-like protein YP_628184.1 1499554 D 357544 CDS YP_628185.1 108563869 4098616 1499979..1501190 1 NC_008086.1 type II restriction enzyme 1501190 4098616 HPAG1_1444 Helicobacter pylori HPAG1 type II restriction enzyme YP_628185.1 1499979 D 357544 CDS YP_628186.1 108563870 4098617 1501256..1503955 1 NC_008086.1 DNA polymerase I 1503955 4098617 HPAG1_1445 Helicobacter pylori HPAG1 DNA polymerase I YP_628186.1 1501256 D 357544 CDS YP_628187.1 108563871 4098618 1504070..1504816 1 NC_008086.1 outer membrane protein HorJ 1504816 4098618 HPAG1_1446 Helicobacter pylori HPAG1 outer membrane protein HorJ YP_628187.1 1504070 D 357544 CDS YP_628188.1 108563872 4098619 1504869..1505891 1 NC_008086.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1505891 4098619 HPAG1_1447 Helicobacter pylori HPAG1 branched-chain amino acid aminotransferase YP_628188.1 1504869 D 357544 CDS YP_628189.1 108563873 4098620 complement(1505896..1506591) 1 NC_008086.1 outer membrane protein 1506591 4098620 HPAG1_1448 Helicobacter pylori HPAG1 outer membrane protein YP_628189.1 1505896 R 357544 CDS YP_628190.1 108563874 4098621 1506725..1507858 1 NC_008086.1 hypothetical protein 1507858 4098621 HPAG1_1449 Helicobacter pylori HPAG1 hypothetical protein YP_628190.1 1506725 D 357544 CDS YP_628191.1 108563875 4098622 1507858..1508643 1 NC_008086.1 ABC transporter ATP-binding protein 1508643 4098622 HPAG1_1450 Helicobacter pylori HPAG1 ABC transporter ATP-binding protein YP_628191.1 1507858 D 357544 CDS YP_628192.1 108563876 4098623 1508628..1509443 1 NC_008086.1 ABC transport system substrate binding protein 1509443 4098623 HPAG1_1451 Helicobacter pylori HPAG1 ABC transport system substrate binding protein YP_628192.1 1508628 D 357544 CDS YP_628193.1 108563877 4098624 1509446..1510123 1 NC_008086.1 hypothetical protein 1510123 4098624 HPAG1_1452 Helicobacter pylori HPAG1 hypothetical protein YP_628193.1 1509446 D 357544 CDS YP_628194.1 108563878 4098625 1510135..1510722 1 NC_008086.1 putative secreted motility protein 1510722 4098625 HPAG1_1453 Helicobacter pylori HPAG1 putative secreted motility protein YP_628194.1 1510135 D 357544 CDS YP_628195.1 108563879 4098626 complement(1511017..1512069) 1 NC_008086.1 cytochrome c551 peroxidase 1512069 4098626 HPAG1_1454 Helicobacter pylori HPAG1 cytochrome c551 peroxidase YP_628195.1 1511017 R 357544 CDS YP_628196.1 108563880 4098627 1512217..1515852 1 NC_008086.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1515852 dnaE 4098627 dnaE Helicobacter pylori HPAG1 DNA polymerase III subunit alpha YP_628196.1 1512217 D 357544 CDS YP_628197.1 108563881 4098628 1515834..1516622 1 NC_008086.1 hypothetical protein 1516622 4098628 HPAG1_1456 Helicobacter pylori HPAG1 hypothetical protein YP_628197.1 1515834 D 357544 CDS YP_628198.1 108563882 4098629 1516678..1516992 1 NC_008086.1 thioredoxin 1516992 4098629 HPAG1_1457 Helicobacter pylori HPAG1 thioredoxin YP_628198.1 1516678 D 357544 CDS YP_628199.1 108563883 4098630 1517355..1517987 1 NC_008086.1 hypothetical protein 1517987 4098630 HPAG1_1458 Helicobacter pylori HPAG1 hypothetical protein YP_628199.1 1517355 D 357544 CDS YP_628200.1 108563884 4098631 1518011..1518538 1 NC_008086.1 membrane-associated lipoprotein 1518538 4098631 HPAG1_1459 Helicobacter pylori HPAG1 membrane-associated lipoprotein YP_628200.1 1518011 D 357544 CDS YP_628201.1 108563885 4098632 1518546..1518887 1 NC_008086.1 hypothetical protein 1518887 4098632 HPAG1_1460 Helicobacter pylori HPAG1 hypothetical protein YP_628201.1 1518546 D 357544 CDS YP_628202.1 108563886 4098653 1518896..1519807 1 NC_008086.1 hypothetical protein 1519807 4098653 HPAG1_1461 Helicobacter pylori HPAG1 hypothetical protein YP_628202.1 1518896 D 357544 CDS YP_628203.1 108563887 4098654 complement(1520168..1521295) 1 NC_008086.1 type I R-M system specificity subunit 1521295 4098654 HPAG1_1462 Helicobacter pylori HPAG1 type I R-M system specificity subunit YP_628203.1 1520168 R 357544 CDS YP_628204.1 108563888 4098655 complement(1521283..1522059) 1 NC_008086.1 hypothetical protein 1522059 4098655 HPAG1_1463 Helicobacter pylori HPAG1 hypothetical protein YP_628204.1 1521283 R 357544 CDS YP_628205.1 108563889 4098656 complement(1522146..1524158) 1 NC_008086.1 type I restriction enzyme M protein 1524158 4098656 HPAG1_1464 Helicobacter pylori HPAG1 type I restriction enzyme M protein YP_628205.1 1522146 R 357544 CDS YP_628206.1 108563890 4098657 complement(1524194..1524604) 1 NC_008086.1 type I restriction enzyme M protein 1524604 4098657 HPAG1_1465 Helicobacter pylori HPAG1 type I restriction enzyme M protein YP_628206.1 1524194 R 357544 CDS YP_628207.1 108563891 4098658 1524671..1527649 1 NC_008086.1 type I restriction enzyme R protein 1527649 4098658 HPAG1_1466 Helicobacter pylori HPAG1 type I restriction enzyme R protein YP_628207.1 1524671 D 357544 CDS YP_628208.1 108563892 4098659 1527649..1527879 1 NC_008086.1 hypothetical protein 1527879 4098659 HPAG1_1467 Helicobacter pylori HPAG1 hypothetical protein YP_628208.1 1527649 D 357544 CDS YP_628209.1 108563893 4098660 1527816..1528355 1 NC_008086.1 hypothetical protein 1528355 4098660 HPAG1_1468 Helicobacter pylori HPAG1 hypothetical protein YP_628209.1 1527816 D 357544 CDS YP_628210.1 108563894 4098661 complement(1528454..1530982) 1 NC_008086.1 iron(III) dicitrate transport protein 1530982 4098661 HPAG1_1469 Helicobacter pylori HPAG1 iron(III) dicitrate transport protein YP_628210.1 1528454 R 357544 CDS YP_628211.1 108563895 4098662 complement(1531330..1532298) 1 NC_008086.1 arginase 1532298 4098662 HPAG1_1470 Helicobacter pylori HPAG1 arginase YP_628211.1 1531330 R 357544 CDS YP_628212.1 108563896 4098663 complement(1532311..1533738) 1 NC_008086.1 amino acid permease 1533738 4098663 HPAG1_1471 Helicobacter pylori HPAG1 amino acid permease YP_628212.1 1532311 R 357544 CDS YP_628213.1 108563897 4098664 1533938..1535080 1 NC_008086.1 alanine dehydrogenase 1535080 4098664 HPAG1_1472 Helicobacter pylori HPAG1 alanine dehydrogenase YP_628213.1 1533938 D 357544 CDS YP_628214.1 108563898 4098665 1535201..1536754 1 NC_008086.1 hypothetical protein 1536754 4098665 HPAG1_1473 Helicobacter pylori HPAG1 hypothetical protein YP_628214.1 1535201 D 357544 CDS YP_628215.1 108563899 4098666 1536738..1536926 1 NC_008086.1 hypothetical protein 1536926 4098666 HPAG1_1474 Helicobacter pylori HPAG1 hypothetical protein YP_628215.1 1536738 D 357544 CDS YP_628216.1 108563900 4098667 complement(1536937..1537665) 1 NC_008086.1 outer membrane protein HorL 1537665 4098667 HPAG1_1475 Helicobacter pylori HPAG1 outer membrane protein HorL YP_628216.1 1536937 R 357544 CDS YP_628217.1 108563901 4098668 1537852..1538706 1 NC_008086.1 hypothetical protein 1538706 4098668 HPAG1_1476 Helicobacter pylori HPAG1 hypothetical protein YP_628217.1 1537852 D 357544 CDS YP_628218.1 108563902 4098669 1538719..1540293 1 NC_008086.1 DNA repair protein 1540293 4098669 HPAG1_1477 Helicobacter pylori HPAG1 DNA repair protein YP_628218.1 1538719 D 357544 CDS YP_628219.1 108563903 4098670 1540290..1541597 1 NC_008086.1 fibronectin/fibrinogen-binding protein 1541597 4098670 HPAG1_1478 Helicobacter pylori HPAG1 fibronectin/fibrinogen-binding protein YP_628219.1 1540290 D 357544 CDS YP_628220.1 108563904 4098671 1541617..1541913 1 NC_008086.1 hypothetical protein 1541913 4098671 HPAG1_1479 Helicobacter pylori HPAG1 hypothetical protein YP_628220.1 1541617 D 357544 CDS YP_628221.1 108563905 4098672 1542044..1542400 1 NC_008086.1 hypothetical protein 1542400 4098672 HPAG1_1480 Helicobacter pylori HPAG1 hypothetical protein YP_628221.1 1542044 D 357544 CDS YP_628222.1 108563906 4098556 complement(1542646..1543617) 1 NC_008086.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1543617 4098556 HPAG1_1481 Helicobacter pylori HPAG1 DNA polymerase III subunit epsilon YP_628222.1 1542646 R 357544 CDS YP_628223.1 108563907 4098557 complement(1543487..1544140) 1 NC_008086.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1544140 4098557 HPAG1_1482 Helicobacter pylori HPAG1 ribulose-phosphate 3-epimerase YP_628223.1 1543487 R 357544 CDS YP_628224.1 108563908 4098558 1544211..1545083 1 NC_008086.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1545083 4098558 HPAG1_1483 Helicobacter pylori HPAG1 fructose-1,6-bisphosphatase YP_628224.1 1544211 D 357544 CDS YP_628225.1 108563909 4098559 1545080..1545286 1 NC_008086.1 hypothetical protein 1545286 4098559 HPAG1_1484 Helicobacter pylori HPAG1 hypothetical protein YP_628225.1 1545080 D 357544 CDS YP_628226.1 108563910 4098560 1545299..1546195 1 NC_008086.1 putative type II methylase protein 1546195 4098560 HPAG1_1485 Helicobacter pylori HPAG1 putative type II methylase protein YP_628226.1 1545299 D 357544 CDS YP_628227.1 108563911 4098561 1546188..1546919 1 NC_008086.1 hypothetical protein 1546919 4098561 HPAG1_1486 Helicobacter pylori HPAG1 hypothetical protein YP_628227.1 1546188 D 357544 CDS YP_628228.1 108563912 4098562 complement(1547040..1547897) 1 NC_008086.1 ubiquinol cytochrome c oxidoreductase, cytochrome c1 1547897 4098562 HPAG1_1487 Helicobacter pylori HPAG1 ubiquinol cytochrome c oxidoreductase, cytochrome c1 YP_628228.1 1547040 R 357544 CDS YP_628229.1 108563913 4098563 complement(1547894..1549132) 1 NC_008086.1 ubiquinol cytochrome c oxidoreductase, cytochrome b subunit 1549132 4098563 HPAG1_1488 Helicobacter pylori HPAG1 ubiquinol cytochrome c oxidoreductase, cytochrome b subunit YP_628229.1 1547894 R 357544 CDS YP_628230.1 108563914 4098564 complement(1549143..1549646) 1 NC_008086.1 ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit 1549646 4098564 HPAG1_1489 Helicobacter pylori HPAG1 ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit YP_628230.1 1549143 R 357544 CDS YP_628231.1 108563915 4098565 complement(1549770..1552769) 1 NC_008086.1 transcription-repair coupling factor 1552769 4098565 HPAG1_1490 Helicobacter pylori HPAG1 transcription-repair coupling factor YP_628231.1 1549770 R 357544 CDS YP_628232.1 108563916 4098566 complement(1552773..1553183) 1 NC_008086.1 hypothetical protein 1553183 4098566 HPAG1_1491 Helicobacter pylori HPAG1 hypothetical protein YP_628232.1 1552773 R 357544 CDS YP_628233.1 108563917 4098567 complement(1553102..1554037) 1 NC_008086.1 toxR-activated gene 1554037 4098567 HPAG1_1492 Helicobacter pylori HPAG1 toxR-activated gene YP_628233.1 1553102 R 357544 CDS YP_628234.1 108563918 4098568 complement(1554046..1554972) 1 NC_008086.1 toxR-activated gene 1554972 4098568 HPAG1_1493 Helicobacter pylori HPAG1 toxR-activated gene YP_628234.1 1554046 R 357544 CDS YP_628235.1 108563919 4098569 complement(1554972..1556141) 1 NC_008086.1 folylpolyglutamate synthase 1556141 4098569 HPAG1_1494 Helicobacter pylori HPAG1 folylpolyglutamate synthase YP_628235.1 1554972 R 357544 CDS YP_628236.1 108563920 4098570 complement(1556131..1556643) 1 NC_008086.1 hypothetical protein 1556643 4098570 HPAG1_1495 Helicobacter pylori HPAG1 hypothetical protein YP_628236.1 1556131 R 357544 CDS YP_628237.1 108563921 4098571 complement(1556640..1559060) 1 NC_008086.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1559060 leuS 4098571 leuS Helicobacter pylori HPAG1 leucyl-tRNA synthetase YP_628237.1 1556640 R 357544 CDS YP_628238.1 108563922 4098572 complement(1559071..1559409) 1 NC_008086.1 hypothetical protein 1559409 4098572 HPAG1_1497 Helicobacter pylori HPAG1 hypothetical protein YP_628238.1 1559071 R 357544 CDS YP_628239.1 108563923 4098573 complement(1559419..1560390) 1 NC_008086.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1560390 secF 4098573 secF Helicobacter pylori HPAG1 preprotein translocase subunit SecF YP_628239.1 1559419 R 357544 CDS YP_628240.1 108563924 4098574 complement(1560399..1561976) 1 NC_008086.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1561976 secD 4098574 secD Helicobacter pylori HPAG1 preprotein translocase subunit SecD YP_628240.1 1560399 R 357544 CDS YP_628241.1 108563925 4098575 complement(1561977..1562270) 1 NC_008086.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1562270 yajC 4098575 yajC Helicobacter pylori HPAG1 preprotein translocase subunit YajC YP_628241.1 1561977 R 357544 CDS YP_628242.1 108563926 4098576 complement(1562318..1563634) 1 NC_008086.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1563634 nhaA 4098576 nhaA Helicobacter pylori HPAG1 pH-dependent sodium/proton antiporter YP_628242.1 1562318 R 357544 CDS YP_628243.1 108563927 4098577 complement(1563658..1566519) 1 NC_008086.1 putative recombination protein RecB 1566519 4098577 HPAG1_1502 Helicobacter pylori HPAG1 putative recombination protein RecB YP_628243.1 1563658 R 357544 CDS YP_628244.1 108563928 4098578 1566769..1567563 1 NC_008086.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1567563 rpsB 4098578 rpsB Helicobacter pylori HPAG1 30S ribosomal protein S2 YP_628244.1 1566769 D 357544 CDS YP_628245.1 108563929 4098579 1567563..1568630 1 NC_008086.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1568630 tsf 4098579 tsf Helicobacter pylori HPAG1 elongation factor Ts YP_628245.1 1567563 D 357544 CDS YP_628246.1 108563930 4098580 complement(1569074..1570921) 1 NC_008086.1 cell division protein 1570921 4098580 HPAG1_1505 Helicobacter pylori HPAG1 cell division protein YP_628246.1 1569074 R 357544 CDS YP_628247.1 108563931 4098581 complement(1571077..1571406) 1 NC_008086.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1571406 fliE 4098581 fliE Helicobacter pylori HPAG1 flagellar hook-basal body protein FliE YP_628247.1 1571077 R 357544 CDS YP_628248.1 108563932 4098582 complement(1571534..1572019) 1 NC_008086.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1572019 flgC 4098582 flgC Helicobacter pylori HPAG1 flagellar basal body rod protein FlgC YP_628248.1 1571534 R 357544 CDS YP_628249.1 108563933 4098583 complement(1572033..1572455) 1 NC_008086.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1572455 flgB 4098583 flgB Helicobacter pylori HPAG1 flagellar basal body rod protein FlgB YP_628249.1 1572033 R 357544 CDS YP_628250.1 108563934 4098584 1572660..1573826 1 NC_008086.1 cell division protein 1573826 4098584 HPAG1_1509 Helicobacter pylori HPAG1 cell division protein YP_628250.1 1572660 D 357544 CDS YP_628251.1 108563935 4098585 complement(1573851..1574858) 1 NC_008086.1 iron(III) ABC transporter, periplasmic iron-binding protein 1574858 4098585 HPAG1_1510 Helicobacter pylori HPAG1 iron(III) ABC transporter, periplasmic iron-binding protein YP_628251.1 1573851 R 357544 CDS YP_628252.1 108563936 4098586 complement(1575057..1576052) 1 NC_008086.1 iron(III) ABC transporter, periplasmic iron-binding protein 1576052 4098586 HPAG1_1511 Helicobacter pylori HPAG1 iron(III) ABC transporter, periplasmic iron-binding protein YP_628252.1 1575057 R 357544 CDS YP_628253.1 108563937 4098587 1576297..1576893 1 NC_008086.1 alkyl hydroperoxide reductase 1576893 4098587 HPAG1_1512 Helicobacter pylori HPAG1 alkyl hydroperoxide reductase YP_628253.1 1576297 D 357544 CDS YP_628254.1 108563938 4098588 1577041..1577856 1 NC_008086.1 putative outer membrane lipoprotein 1577856 4098588 HPAG1_1513 Helicobacter pylori HPAG1 putative outer membrane lipoprotein YP_628254.1 1577041 D 357544 CDS YP_628255.1 108563939 4098589 complement(1578564..1580330) 1 NC_008086.1 penicillin-binding protein 2 1580330 4098589 HPAG1_1514 Helicobacter pylori HPAG1 penicillin-binding protein 2 YP_628255.1 1578564 R 357544 CDS YP_628256.1 108563940 4098590 complement(1580311..1580754) 1 NC_008086.1 hypothetical protein 1580754 4098590 HPAG1_1515 Helicobacter pylori HPAG1 hypothetical protein YP_628256.1 1580311 R 357544 CDS YP_628257.1 108563941 4098591 complement(1580767..1581393) 1 NC_008086.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1581393 engB 4098591 engB Helicobacter pylori HPAG1 ribosome biogenesis GTP-binding protein YsxC YP_628257.1 1580767 R 357544 CDS YP_628258.1 108563942 4098592 complement(1581390..1581947) 1 NC_008086.1 hypothetical protein 1581947 4098592 HPAG1_1517 Helicobacter pylori HPAG1 hypothetical protein YP_628258.1 1581390 R 357544 CDS YP_628259.1 108563943 4098593 complement(1581947..1582540) 1 NC_008086.1 hypothetical protein 1582540 4098593 HPAG1_1518 Helicobacter pylori HPAG1 hypothetical protein YP_628259.1 1581947 R 357544 CDS YP_628260.1 108563944 4098594 complement(1582515..1583009) 1 NC_008086.1 hypothetical protein 1583009 4098594 HPAG1_1519 Helicobacter pylori HPAG1 hypothetical protein YP_628260.1 1582515 R 357544 CDS YP_628261.1 108563945 4098392 complement(1583006..1583950) 1 NC_008086.1 rare lipoprotein A 1583950 4098392 HPAG1_1520 Helicobacter pylori HPAG1 rare lipoprotein A YP_628261.1 1583006 R 357544 CDS YP_628262.1 108563946 4098393 complement(1583950..1585062) 1 NC_008086.1 regulatory protein DniR 1585062 4098393 HPAG1_1521 Helicobacter pylori HPAG1 regulatory protein DniR YP_628262.1 1583950 R 357544 CDS YP_628263.1 108563947 4098394 complement(1585151..1585915) 1 NC_008086.1 hypothetical protein 1585915 4098394 HPAG1_1522 Helicobacter pylori HPAG1 hypothetical protein YP_628263.1 1585151 R 357544 CDS YP_628264.1 108563948 4098395 1585990..1586610 1 NC_008086.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1586610 4098395 HPAG1_1523 Helicobacter pylori HPAG1 riboflavin synthase subunit alpha YP_628264.1 1585990 D 357544 CDS YP_628265.1 108563949 4098396 1586611..1586883 1 NC_008086.1 FlhB-related flagellar biosynthesis protein 1586883 4098396 HPAG1_1524 Helicobacter pylori HPAG1 FlhB-related flagellar biosynthesis protein YP_628265.1 1586611 D 357544 CDS YP_628266.1 108563950 4098397 1586905..1587888 1 NC_008086.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1587888 metN 4098397 metN Helicobacter pylori HPAG1 DL-methionine transporter ATP-binding subunit YP_628266.1 1586905 D 357544 CDS YP_628267.1 108563951 4098398 1587890..1588537 1 NC_008086.1 ABC transporter, permease protein 1588537 4098398 HPAG1_1526 Helicobacter pylori HPAG1 ABC transporter, permease protein YP_628267.1 1587890 D 357544 CDS YP_628268.1 108563952 4098399 complement(1588724..1589155) 1 NC_008086.1 hypothetical protein 1589155 4098399 HPAG1_1527 Helicobacter pylori HPAG1 hypothetical protein YP_628268.1 1588724 R 357544 CDS YP_628269.1 108563953 4098400 complement(1589165..1589827) 1 NC_008086.1 hypothetical protein 1589827 4098400 HPAG1_1528 Helicobacter pylori HPAG1 hypothetical protein YP_628269.1 1589165 R 357544 CDS YP_628270.1 108563954 4098401 complement(1589761..1590768) 1 NC_008086.1 undecaprenyl phosphate N-acetylglucosaminyltransferase 1590768 4098401 HPAG1_1529 Helicobacter pylori HPAG1 undecaprenyl phosphate N-acetylglucosaminyltransferase YP_628270.1 1589761 R 357544 CDS YP_628271.1 108563955 4098402 1590895..1591683 1 NC_008086.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1591683 4098402 HPAG1_1530 Helicobacter pylori HPAG1 pyridoxine 5'-phosphate synthase YP_628271.1 1590895 D 357544 CDS YP_628272.1 108563956 4098403 1591685..1592608 1 NC_008086.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1592608 pdxA 4098403 pdxA Helicobacter pylori HPAG1 4-hydroxythreonine-4-phosphate dehydrogenase YP_628272.1 1591685 D 357544 CDS YP_628273.1 108563957 4098404 1592673..1593695 1 NC_008086.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1593695 4098404 HPAG1_1532 Helicobacter pylori HPAG1 putative DNA-binding/iron metalloprotein/AP endonuclease YP_628273.1 1592673 D 357544 CDS YP_628274.1 108563958 4098405 1594510..1595298 1 NC_008086.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1595298 flgG 4098405 flgG Helicobacter pylori HPAG1 flagellar basal body rod protein FlgG YP_628274.1 1594510 D 357544 CDS YP_628275.1 108563959 4098406 complement(1595317..1595508) 1 NC_008086.1 hypothetical protein 1595508 4098406 HPAG1_1534 Helicobacter pylori HPAG1 hypothetical protein YP_628275.1 1595317 R 357544 CDS YP_628276.1 108563960 4098407 complement(1595565..1596290) 1 NC_008086.1 hypothetical protein 1596290 4098407 HPAG1_1535 Helicobacter pylori HPAG1 hypothetical protein YP_628276.1 1595565 R 357544 CDS YP_628277.1 108564599 4099442 433..2064 1 NC_008087.1 replication initiation protein A 2064 4099442 HPAG1_p001 Helicobacter pylori HPAG1 replication initiation protein A YP_628277.1 433 D 357544 CDS YP_628278.1 108564600 4099443 2077..2784 1 NC_008087.1 hypothetical protein 2784 4099443 HPAG1_p002 Helicobacter pylori HPAG1 hypothetical protein YP_628278.1 2077 D 357544 CDS YP_628279.1 108564601 4099444 3828..5345 1 NC_008087.1 replication initiation protein A 5345 4099444 HPAG1_p003 Helicobacter pylori HPAG1 replication initiation protein A YP_628279.1 3828 D 357544 CDS YP_628280.1 108564602 4099445 complement(5438..7420) 1 NC_008087.1 hypothetical protein 7420 4099445 HPAG1_p004 Helicobacter pylori HPAG1 hypothetical protein YP_628280.1 5438 R 357544 CDS YP_628281.1 108564603 4099446 complement(7410..7754) 1 NC_008087.1 MobC-like protein 7754 4099446 HPAG1_p005 Helicobacter pylori HPAG1 MobC-like protein YP_628281.1 7410 R 357544 CDS YP_628282.1 108564604 4099447 7950..8228 1 NC_008087.1 hypothetical protein 8228 4099447 HPAG1_p006 Helicobacter pylori HPAG1 hypothetical protein YP_628282.1 7950 D 357544 CDS YP_628283.1 108564605 4099448 8215..8364 1 NC_008087.1 hypothetical protein 8364 4099448 HPAG1_p007 Helicobacter pylori HPAG1 hypothetical protein YP_628283.1 8215 D 357544 CDS YP_628284.1 108564606 4099449 complement(8332..8436) 1 NC_008087.1 hypothetical protein 8436 4099449 HPAG1_p008 Helicobacter pylori HPAG1 hypothetical protein YP_628284.1 8332 R 357544 CDS