-- dump date 20111121_012548 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003927930.1 308183797 9788357 complement(11..427) 1 NC_014560.1 COG0781 Transcription termination factor; transcription antitermination protein NusB 427 nusB 9788357 nusB Helicobacter pylori SJM180 transcription antitermination protein NusB YP_003927930.1 11 R 765962 CDS YP_003927931.1 308183798 9786735 complement(429..899) 1 NC_014560.1 COG0054 Riboflavin synthase beta-chain; 6, 7-dimethyl-8-ribityllumazine synthase 899 ribH 9786735 ribH Helicobacter pylori SJM180 6, 7-dimethyl-8-ribityllumazine synthase YP_003927931.1 429 R 765962 CDS YP_003927932.1 308183799 9786736 complement(909..1739) 1 NC_014560.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase 1739 9786736 HPSJM_00015 Helicobacter pylori SJM180 2-dehydro-3-deoxyphosphooctonate aldolase YP_003927932.1 909 R 765962 CDS YP_003927933.1 308183800 9786737 complement(1726..2391) 1 NC_014560.1 COG0288 Carbonic anhydrase; carbonic anhydrase 2391 9786737 HPSJM_00020 Helicobacter pylori SJM180 carbonic anhydrase YP_003927933.1 1726 R 765962 CDS YP_003927934.1 308183801 9786738 2513..3196 1 NC_014560.1 COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 3196 9786738 HPSJM_00025 Helicobacter pylori SJM180 orotidine 5'-phosphate decarboxylase YP_003927934.1 2513 D 765962 CDS YP_003927935.1 308183802 9786739 3197..4027 1 NC_014560.1 COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 4027 panC 9786739 panC Helicobacter pylori SJM180 pantoate--beta-alanine ligase YP_003927935.1 3197 D 765962 CDS YP_003927936.1 308183803 9786745 complement(4922..5047) 1 NC_014560.1 hypothetical protein 5047 9786745 HPSJM_00035 Helicobacter pylori SJM180 hypothetical protein YP_003927936.1 4922 R 765962 CDS YP_003927937.1 308183804 9786746 5036..5227 1 NC_014560.1 hypothetical protein 5227 9786746 HPSJM_00040 Helicobacter pylori SJM180 hypothetical protein YP_003927937.1 5036 D 765962 CDS YP_003927938.1 308183805 9786747 complement(5210..5371) 1 NC_014560.1 hypothetical protein 5371 9786747 HPSJM_00045 Helicobacter pylori SJM180 hypothetical protein YP_003927938.1 5210 R 765962 CDS YP_003927939.1 308183806 9786748 complement(5396..7285) 1 NC_014560.1 putative Outer membrane protein 7285 9786748 HPSJM_00050 Helicobacter pylori SJM180 putative Outer membrane protein YP_003927939.1 5396 R 765962 CDS YP_003927940.1 308183807 9786749 7601..7696 1 NC_014560.1 hypothetical protein 7696 9786749 HPSJM_00055 Helicobacter pylori SJM180 hypothetical protein YP_003927940.1 7601 D 765962 CDS YP_003927941.1 308183808 9786750 complement(7716..9356) 1 NC_014560.1 COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 9356 groEL 9786750 groEL Helicobacter pylori SJM180 chaperonin GroEL YP_003927941.1 7716 R 765962 CDS YP_003927942.1 308183809 9786751 complement(9382..9738) 1 NC_014560.1 COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES 9738 groES 9786751 groES Helicobacter pylori SJM180 co-chaperonin GroES YP_003927942.1 9382 R 765962 CDS YP_003927943.1 308183810 9786752 10021..11700 1 NC_014560.1 COG0358 DNA primase (bacterial type); DNA primase 11700 dnaG 9786752 dnaG Helicobacter pylori SJM180 DNA primase YP_003927943.1 10021 D 765962 CDS YP_003927944.1 308183811 9786753 11697..12749 1 NC_014560.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; hypothetical protein 12749 9786753 HPSJM_00075 Helicobacter pylori SJM180 hypothetical protein YP_003927944.1 11697 D 765962 CDS YP_003927945.1 308183812 9786754 12839..13666 1 NC_014560.1 hypothetical protein 13666 9786754 HPSJM_00080 Helicobacter pylori SJM180 hypothetical protein YP_003927945.1 12839 D 765962 CDS YP_003927946.1 308183813 9786755 13813..14094 1 NC_014560.1 hypothetical protein 14094 9786755 HPSJM_00085 Helicobacter pylori SJM180 hypothetical protein YP_003927946.1 13813 D 765962 CDS YP_003927947.1 308183814 9786756 14094..14357 1 NC_014560.1 hypothetical protein 14357 9786756 HPSJM_00090 Helicobacter pylori SJM180 hypothetical protein YP_003927947.1 14094 D 765962 CDS YP_003927948.1 308183815 9786757 14359..16722 1 NC_014560.1 COG3451 Type IV secretory pathway, VirB4 components; hypothetical protein 16722 9786757 HPSJM_00095 Helicobacter pylori SJM180 hypothetical protein YP_003927948.1 14359 D 765962 CDS YP_003927949.1 308183816 9786758 17027..18367 1 NC_014560.1 COG3014 Uncharacterized protein conserved in bacteria; hypothetical protein 18367 9786758 HPSJM_00100 Helicobacter pylori SJM180 hypothetical protein YP_003927949.1 17027 D 765962 CDS YP_003927950.1 308183817 9786759 18469..19434 1 NC_014560.1 COG0835 Chemotaxis signal transduction protein; chemotaxis protein (cheV) 19434 9786759 HPSJM_00105 Helicobacter pylori SJM180 chemotaxis protein (cheV) YP_003927950.1 18469 D 765962 CDS YP_003927951.1 308183818 9786760 19431..20648 1 NC_014560.1 COG0019 Diaminopimelate decarboxylase; carboxynorspermidine decarboxylase 20648 9786760 HPSJM_00110 Helicobacter pylori SJM180 carboxynorspermidine decarboxylase YP_003927951.1 19431 D 765962 CDS YP_003927952.1 308183819 9786761 complement(20658..21230) 1 NC_014560.1 COG0671 Membrane-associated phospholipid phosphatase; lipid A 1-phosphatase 21230 9786761 HPSJM_00115 Helicobacter pylori SJM180 lipid A 1-phosphatase YP_003927952.1 20658 R 765962 CDS YP_003927953.1 308183820 9786762 complement(21241..22812) 1 NC_014560.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; lipid A phosphoethanolamine transferase 22812 9786762 HPSJM_00120 Helicobacter pylori SJM180 lipid A phosphoethanolamine transferase YP_003927953.1 21241 R 765962 CDS YP_003927954.1 308183821 9786763 22979..23071 1 NC_014560.1 hypothetical protein 23071 9786763 HPSJM_00125 Helicobacter pylori SJM180 hypothetical protein YP_003927954.1 22979 D 765962 CDS YP_003927955.1 308183822 9786764 complement(23235..23405) 1 NC_014560.1 hypothetical protein 23405 9786764 HPSJM_00130 Helicobacter pylori SJM180 hypothetical protein YP_003927955.1 23235 R 765962 CDS YP_003927956.1 308183823 9786765 complement(23389..25464) 1 NC_014560.1 outer membrane protein HopD 25464 9786765 HPSJM_00135 Helicobacter pylori SJM180 outer membrane protein HopD YP_003927956.1 23389 R 765962 CDS YP_003927957.1 308183824 9786766 25686..25778 1 NC_014560.1 hypothetical protein 25778 9786766 HPSJM_00140 Helicobacter pylori SJM180 hypothetical protein YP_003927957.1 25686 D 765962 CDS YP_003927958.1 308183825 9786767 25937..26044 1 NC_014560.1 hypothetical protein 26044 9786767 HPSJM_00145 Helicobacter pylori SJM180 hypothetical protein YP_003927958.1 25937 D 765962 CDS YP_003927959.1 308183826 9786768 complement(26087..27367) 1 NC_014560.1 COG0372 Citrate synthase; type II citrate synthase 27367 gltA 9786768 gltA Helicobacter pylori SJM180 type II citrate synthase YP_003927959.1 26087 R 765962 CDS YP_003927960.1 308183827 9786769 27565..28842 1 NC_014560.1 COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 28842 9786769 HPSJM_00155 Helicobacter pylori SJM180 isocitrate dehydrogenase YP_003927960.1 27565 D 765962 CDS YP_003927961.1 308183828 9786770 28910..29437 1 NC_014560.1 hypothetical protein 29437 9786770 HPSJM_00160 Helicobacter pylori SJM180 hypothetical protein YP_003927961.1 28910 D 765962 CDS YP_003927962.1 308183829 9786771 complement(29414..30070) 1 NC_014560.1 COG0132 Dethiobiotin synthetase; dethiobiotin synthetase 30070 9786771 HPSJM_00165 Helicobacter pylori SJM180 dethiobiotin synthetase YP_003927962.1 29414 R 765962 CDS YP_003927963.1 308183830 9786772 complement(30074..31882) 1 NC_014560.1 hypothetical protein 31882 9786772 HPSJM_00170 Helicobacter pylori SJM180 hypothetical protein YP_003927963.1 30074 R 765962 CDS YP_003927964.1 308183831 9786773 31993..32406 1 NC_014560.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; putative universal stress global response regulator UspA 32406 9786773 HPSJM_00175 Helicobacter pylori SJM180 putative universal stress global response regulator UspA YP_003927964.1 31993 D 765962 CDS YP_003927965.1 308183832 9786774 32408..32683 1 NC_014560.1 COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adapter protein clpS 32683 9786774 HPSJM_00180 Helicobacter pylori SJM180 ATP-dependent Clp protease adapter protein clpS YP_003927965.1 32408 D 765962 CDS YP_003927966.1 308183833 9786775 32683..34911 1 NC_014560.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent protease, ATP-binding subunit 34911 9786775 HPSJM_00185 Helicobacter pylori SJM180 ATP-dependent protease, ATP-binding subunit YP_003927966.1 32683 D 765962 CDS YP_003927967.1 308183834 9786776 34901..35254 1 NC_014560.1 COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 35254 9786776 HPSJM_00190 Helicobacter pylori SJM180 aspartate alpha-decarboxylase YP_003927967.1 34901 D 765962 CDS YP_003927968.1 308183835 9786777 35257..35559 1 NC_014560.1 COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 35559 9786777 HPSJM_00195 Helicobacter pylori SJM180 hypothetical protein YP_003927968.1 35257 D 765962 CDS YP_003927969.1 308183836 9786778 35559..36554 1 NC_014560.1 COG1199 Rad3-related DNA helicases; hypothetical protein 36554 9786778 HPSJM_00200 Helicobacter pylori SJM180 hypothetical protein YP_003927969.1 35559 D 765962 CDS YP_003927970.1 308183837 9786779 36562..37617 1 NC_014560.1 NADH-ubiquinone oxidoreductase subunit 37617 9786779 HPSJM_00205 Helicobacter pylori SJM180 NADH-ubiquinone oxidoreductase subunit YP_003927970.1 36562 D 765962 CDS YP_003927971.1 308183838 9786780 37633..37746 1 NC_014560.1 Comb7 competence protein 37746 9786780 HPSJM_00210 Helicobacter pylori SJM180 Comb7 competence protein YP_003927971.1 37633 D 765962 CDS YP_003927972.1 308183839 9786781 37743..38486 1 NC_014560.1 COG3736 Type IV secretory pathway, component VirB8; comB8 competence protein 38486 9786781 HPSJM_00215 Helicobacter pylori SJM180 comB8 competence protein YP_003927972.1 37743 D 765962 CDS YP_003927973.1 308183840 9786782 38486..39466 1 NC_014560.1 COG3504 Type IV secretory pathway, VirB9 components; ComB9 competence protein 39466 9786782 HPSJM_00220 Helicobacter pylori SJM180 ComB9 competence protein YP_003927973.1 38486 D 765962 CDS YP_003927974.1 308183841 9786783 39459..40595 1 NC_014560.1 COG2948 Type IV secretory pathway, VirB10 components; ComB10 competence protein 40595 9786783 HPSJM_00225 Helicobacter pylori SJM180 ComB10 competence protein YP_003927974.1 39459 D 765962 CDS YP_003927975.1 308183842 9786784 40665..42077 1 NC_014560.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase 42077 9786784 HPSJM_00230 Helicobacter pylori SJM180 mannose-6-phosphate isomerase YP_003927975.1 40665 D 765962 CDS YP_003927976.1 308183843 9786785 42106..43251 1 NC_014560.1 COG1089 GDP-D-mannose dehydratase; GDP-D-mannose dehydratase 43251 9786785 HPSJM_00235 Helicobacter pylori SJM180 GDP-D-mannose dehydratase YP_003927976.1 42106 D 765962 CDS YP_003927977.1 308183844 9786786 43244..44176 1 NC_014560.1 COG0451 Nucleoside-diphosphate-sugar epimerases; nodulation protein (nolK) 44176 9786786 HPSJM_00240 Helicobacter pylori SJM180 nodulation protein (nolK) YP_003927977.1 43244 D 765962 CDS YP_003927978.1 308183845 9786787 44296..44415 1 NC_014560.1 hypothetical protein 44415 9786787 HPSJM_00245 Helicobacter pylori SJM180 hypothetical protein YP_003927978.1 44296 D 765962 CDS YP_003927979.1 308183846 9786788 complement(44817..44918) 1 NC_014560.1 hypothetical protein 44918 9786788 HPSJM_00250 Helicobacter pylori SJM180 hypothetical protein YP_003927979.1 44817 R 765962 CDS YP_003927980.1 308183847 9786789 complement(45037..46035) 1 NC_014560.1 COG0309 Hydrogenase maturation factor; hydrogenase expression/formation protein 46035 9786789 HPSJM_00255 Helicobacter pylori SJM180 hydrogenase expression/formation protein YP_003927980.1 45037 R 765962 CDS YP_003927981.1 308183848 9786790 complement(46038..48290) 1 NC_014560.1 COG0068 Hydrogenase maturation factor; Hydrogenase maturation protein HypF 48290 9786790 HPSJM_00260 Helicobacter pylori SJM180 Hydrogenase maturation protein HypF YP_003927981.1 46038 R 765962 CDS YP_003927982.1 308183849 9786791 complement(48287..49279) 1 NC_014560.1 COG2957 Peptidylarginine deiminase and related enzymes; hypothetical protein 49279 9786791 HPSJM_00265 Helicobacter pylori SJM180 hypothetical protein YP_003927982.1 48287 R 765962 CDS YP_003927983.1 308183850 9786792 complement(49331..50029) 1 NC_014560.1 COG0863 DNA modification methylase; adenine specific DNA methyltransferase (dpnA) 50029 9786792 HPSJM_00270 Helicobacter pylori SJM180 adenine specific DNA methyltransferase (dpnA) YP_003927983.1 49331 R 765962 CDS YP_003927984.1 308183851 9786793 complement(50026..51093) 1 NC_014560.1 COG0270 Site-specific DNA methylase; cytosine specific DNA methyltransferase 51093 9786793 HPSJM_00275 Helicobacter pylori SJM180 cytosine specific DNA methyltransferase YP_003927984.1 50026 R 765962 CDS YP_003927985.1 308183852 9786794 complement(52491..53750) 1 NC_014560.1 hypothetical protein 53750 9786794 HPSJM_00290 Helicobacter pylori SJM180 hypothetical protein YP_003927985.1 52491 R 765962 CDS YP_003927986.1 308183853 9786795 complement(53750..56218) 1 NC_014560.1 COG0270 Site-specific DNA methylase; adenine/cytosine DNA methyltransferase 56218 9786795 HPSJM_00295 Helicobacter pylori SJM180 adenine/cytosine DNA methyltransferase YP_003927986.1 53750 R 765962 CDS YP_003927987.1 308183854 9786796 complement(56260..57750) 1 NC_014560.1 COG0591 Na+/proline symporter; sodium/proline symporter 57750 9786796 HPSJM_00300 Helicobacter pylori SJM180 sodium/proline symporter YP_003927987.1 56260 R 765962 CDS YP_003927988.1 308183855 9786797 complement(57777..61334) 1 NC_014560.1 COG0506 Proline dehydrogenase; Proline/pyrroline-5-carboxylate dehydrogenase 61334 9786797 HPSJM_00305 Helicobacter pylori SJM180 Proline/pyrroline-5-carboxylate dehydrogenase YP_003927988.1 57777 R 765962 CDS YP_003927989.1 308183856 9786798 61663..61872 1 NC_014560.1 hypothetical protein 61872 9786798 HPSJM_00310 Helicobacter pylori SJM180 hypothetical protein YP_003927989.1 61663 D 765962 CDS YP_003927990.1 308183857 9786799 61985..62083 1 NC_014560.1 hypothetical protein 62083 9786799 HPSJM_00315 Helicobacter pylori SJM180 hypothetical protein YP_003927990.1 61985 D 765962 CDS YP_003927991.1 308183858 9786800 62490..63170 1 NC_014560.1 hypothetical protein 63170 9786800 HPSJM_00320 Helicobacter pylori SJM180 hypothetical protein YP_003927991.1 62490 D 765962 CDS YP_003927992.1 308183859 9786801 63171..64013 1 NC_014560.1 hypothetical protein 64013 9786801 HPSJM_00325 Helicobacter pylori SJM180 hypothetical protein YP_003927992.1 63171 D 765962 CDS YP_003927993.1 308183860 9786802 64308..64490 1 NC_014560.1 hypothetical protein 64490 9786802 HPSJM_00330 Helicobacter pylori SJM180 hypothetical protein YP_003927993.1 64308 D 765962 CDS YP_003927994.1 308183861 9786803 66921..67490 1 NC_014560.1 hypothetical protein 67490 9786803 HPSJM_00350 Helicobacter pylori SJM180 hypothetical protein YP_003927994.1 66921 D 765962 CDS YP_003927995.1 308183862 9786804 67506..67766 1 NC_014560.1 hypothetical protein 67766 9786804 HPSJM_00355 Helicobacter pylori SJM180 hypothetical protein YP_003927995.1 67506 D 765962 CDS YP_003927996.1 308183863 9786805 69226..69645 1 NC_014560.1 hypothetical protein 69645 9786805 HPSJM_00370 Helicobacter pylori SJM180 hypothetical protein YP_003927996.1 69226 D 765962 CDS YP_003927997.1 308183864 9786806 69647..69997 1 NC_014560.1 hypothetical protein 69997 9786806 HPSJM_00375 Helicobacter pylori SJM180 hypothetical protein YP_003927997.1 69647 D 765962 CDS YP_003927998.1 308183865 9786807 complement(72564..73361) 1 NC_014560.1 COG0829 Urease accessory protein UreH; urease accessory protein UreH 73361 9786807 HPSJM_00390 Helicobacter pylori SJM180 urease accessory protein UreH YP_003927998.1 72564 R 765962 CDS YP_003927999.1 308183866 9786808 complement(73361..73960) 1 NC_014560.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; Urease accessory protein UreG 73960 9786808 HPSJM_00395 Helicobacter pylori SJM180 Urease accessory protein UreG YP_003927999.1 73361 R 765962 CDS YP_003928000.1 308183867 9786809 complement(73989..74753) 1 NC_014560.1 COG0830 Urease accessory protein UreF; urease accessory protein (ureF) 74753 9786809 HPSJM_00400 Helicobacter pylori SJM180 urease accessory protein (ureF) YP_003928000.1 73989 R 765962 CDS YP_003928001.1 308183868 9786810 complement(74765..75277) 1 NC_014560.1 COG2371 Urease accessory protein UreE; urease accessory protein UreE 75277 ureE 9786810 ureE Helicobacter pylori SJM180 urease accessory protein UreE YP_003928001.1 74765 R 765962 CDS YP_003928002.1 308183869 9786811 complement(75279..75866) 1 NC_014560.1 COG1138 Cytochrome c biogenesis factor; urease accessory protein / pH-dependent urea-transporter 75866 9786811 HPSJM_00410 Helicobacter pylori SJM180 urease accessory protein / pH-dependent urea-transporter YP_003928002.1 75279 R 765962 CDS YP_003928003.1 308183870 9786812 complement(76111..77820) 1 NC_014560.1 COG0804 Urea amidohydrolase (urease) alpha subunit; urease subunit beta 77820 ureB 9786812 ureB Helicobacter pylori SJM180 urease subunit beta YP_003928003.1 76111 R 765962 CDS YP_003928004.1 308183871 9786813 complement(77824..78540) 1 NC_014560.1 COG0831 Urea amidohydrolase (urease) gamma subunit; urease subunit alpha 78540 9786813 HPSJM_00420 Helicobacter pylori SJM180 urease subunit alpha YP_003928004.1 77824 R 765962 CDS YP_003928005.1 308183872 9786815 complement(78886..79359) 1 NC_014560.1 COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 79359 lspA 9786815 lspA Helicobacter pylori SJM180 lipoprotein signal peptidase YP_003928005.1 78886 R 765962 CDS YP_003928006.1 308183873 9786816 complement(79353..80690) 1 NC_014560.1 COG1109 Phosphomannomutase; phosphoglucosamine mutase 80690 glmM 9786816 glmM Helicobacter pylori SJM180 phosphoglucosamine mutase YP_003928006.1 79353 R 765962 CDS YP_003928007.1 308183874 9786817 80780..81049 1 NC_014560.1 COG0268 Ribosomal protein S20; 30S ribosomal protein S20 81049 rpsT 9786817 rpsT Helicobacter pylori SJM180 30S ribosomal protein S20 YP_003928007.1 80780 D 765962 CDS YP_003928008.1 308183875 9786818 81176..82234 1 NC_014560.1 COG0216 Protein chain release factor A; peptide chain release factor 1 82234 prfA 9786818 prfA Helicobacter pylori SJM180 peptide chain release factor 1 YP_003928008.1 81176 D 765962 CDS YP_003928009.1 308183876 9786819 82624..82881 1 NC_014560.1 hypothetical protein 82881 9786819 HPSJM_00450 Helicobacter pylori SJM180 hypothetical protein YP_003928009.1 82624 D 765962 CDS YP_003928010.1 308183877 9786820 82893..84329 1 NC_014560.1 outer membrane protein HorA 84329 9786820 HPSJM_00455 Helicobacter pylori SJM180 outer membrane protein HorA YP_003928010.1 82893 D 765962 CDS YP_003928011.1 308183878 9786821 84573..86348 1 NC_014560.1 hypothetical protein 86348 9786821 HPSJM_00460 Helicobacter pylori SJM180 hypothetical protein YP_003928011.1 84573 D 765962 CDS YP_003928012.1 308183879 9786822 86501..86629 1 NC_014560.1 hypothetical protein 86629 9786822 HPSJM_00465 Helicobacter pylori SJM180 hypothetical protein YP_003928012.1 86501 D 765962 CDS YP_003928013.1 308183880 9786823 complement(86786..88807) 1 NC_014560.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein (MCP) 88807 9786823 HPSJM_00470 Helicobacter pylori SJM180 methyl-accepting chemotaxis protein (MCP) YP_003928013.1 86786 R 765962 CDS YP_003928014.1 308183881 9786824 complement(88960..89349) 1 NC_014560.1 COG0103 Ribosomal protein S9; 30S ribosomal protein S9 89349 rpsI 9786824 rpsI Helicobacter pylori SJM180 30S ribosomal protein S9 YP_003928014.1 88960 R 765962 CDS YP_003928015.1 308183882 9786825 complement(89346..89771) 1 NC_014560.1 COG0102 Ribosomal protein L13; 50S ribosomal protein L13 89771 rplM 9786825 rplM Helicobacter pylori SJM180 50S ribosomal protein L13 YP_003928015.1 89346 R 765962 CDS YP_003928016.1 308183883 9786826 complement(90123..90311) 1 NC_014560.1 hypothetical protein 90311 9786826 HPSJM_00485 Helicobacter pylori SJM180 hypothetical protein YP_003928016.1 90123 R 765962 CDS YP_003928017.1 308183884 9786827 complement(90317..91669) 1 NC_014560.1 COG0579 Predicted dehydrogenase; Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO) 91669 9786827 HPSJM_00490 Helicobacter pylori SJM180 Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO) YP_003928017.1 90317 R 765962 CDS YP_003928018.1 308183885 9786828 complement(91723..93096) 1 NC_014560.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 93096 9786828 HPSJM_00495 Helicobacter pylori SJM180 hypothetical protein YP_003928018.1 91723 R 765962 CDS YP_003928019.1 308183886 9786829 complement(93116..95155) 1 NC_014560.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD 95155 9786829 HPSJM_00500 Helicobacter pylori SJM180 RNA polymerase sigma factor RpoD YP_003928019.1 93116 R 765962 CDS YP_003928020.1 308183887 9786830 complement(95352..96047) 1 NC_014560.1 COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 96047 9786830 HPSJM_00505 Helicobacter pylori SJM180 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_003928020.1 95352 R 765962 CDS YP_003928021.1 308183888 9786831 complement(96058..96987) 1 NC_014560.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 96987 9786831 HPSJM_00510 Helicobacter pylori SJM180 malonyl CoA-acyl carrier protein transacylase YP_003928021.1 96058 R 765962 CDS YP_003928022.1 308183889 9786833 97426..98436 1 NC_014560.1 COG2958 Uncharacterized protein conserved in bacteria; HrgA protein 98436 9786833 HPSJM_00520 Helicobacter pylori SJM180 HrgA protein YP_003928022.1 97426 D 765962 CDS YP_003928023.1 308183890 9786834 98440..99261 1 NC_014560.1 COG0863 DNA modification methylase; M.HpyAIII, type II adenine methyltransferase 99261 9786834 HPSJM_00525 Helicobacter pylori SJM180 M.HpyAIII, type II adenine methyltransferase YP_003928023.1 98440 D 765962 CDS YP_003928024.1 308183891 9786835 complement(100284..100814) 1 NC_014560.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; hypothetical protein 100814 9786835 HPSJM_00540 Helicobacter pylori SJM180 hypothetical protein YP_003928024.1 100284 R 765962 CDS YP_003928025.1 308183892 9786836 100887..101831 1 NC_014560.1 COG1052 Lactate dehydrogenase and related dehydrogenases; 2-hydroxyacid dehydrogenase 101831 9786836 HPSJM_00545 Helicobacter pylori SJM180 2-hydroxyacid dehydrogenase YP_003928025.1 100887 D 765962 CDS YP_003928026.1 308183893 9786837 complement(102017..102730) 1 NC_014560.1 hypothetical protein 102730 9786837 HPSJM_00550 Helicobacter pylori SJM180 hypothetical protein YP_003928026.1 102017 R 765962 CDS YP_003928027.1 308183894 9786838 complement(102834..104294) 1 NC_014560.1 COG0498 Threonine synthase; threonine synthase 104294 9786838 HPSJM_00555 Helicobacter pylori SJM180 threonine synthase YP_003928027.1 102834 R 765962 CDS YP_003928028.1 308183895 9786839 104489..106516 1 NC_014560.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein (tlpA) 106516 9786839 HPSJM_00560 Helicobacter pylori SJM180 methyl-accepting chemotaxis protein (tlpA) YP_003928028.1 104489 D 765962 CDS YP_003928029.1 308183896 9786840 106516..107622 1 NC_014560.1 COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein 107622 9786840 HPSJM_00565 Helicobacter pylori SJM180 hypothetical protein YP_003928029.1 106516 D 765962 CDS YP_003928030.1 308183897 9786841 107739..108500 1 NC_014560.1 hypothetical protein 108500 9786841 HPSJM_00570 Helicobacter pylori SJM180 hypothetical protein YP_003928030.1 107739 D 765962 CDS YP_003928031.1 308183898 9786842 complement(108483..109262) 1 NC_014560.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; hypothetical protein 109262 9786842 HPSJM_00575 Helicobacter pylori SJM180 hypothetical protein YP_003928031.1 108483 R 765962 CDS YP_003928032.1 308183899 9786843 complement(109295..110992) 1 NC_014560.1 COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein tlpB; putative signal peptide 110992 9786843 HPSJM_00580 Helicobacter pylori SJM180 Methyl-accepting chemotaxis protein tlpB; putative signal peptide YP_003928032.1 109295 R 765962 CDS YP_003928033.1 308183900 9786844 complement(111180..112925) 1 NC_014560.1 COG0737 5'-nucleotidase/2', 3'-cyclic phosphodiesterase and related esterases; 2', 3'-cyclic-nucleotide 2'-phosphodiesterase 112925 9786844 HPSJM_00585 Helicobacter pylori SJM180 2', 3'-cyclic-nucleotide 2'-phosphodiesterase YP_003928033.1 111180 R 765962 CDS YP_003928034.1 308183901 9786845 complement(113068..113526) 1 NC_014560.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase 113526 9786845 HPSJM_00590 Helicobacter pylori SJM180 S-ribosylhomocysteinase YP_003928034.1 113068 R 765962 CDS YP_003928035.1 308183902 9786846 complement(113564..114706) 1 NC_014560.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase/cystathionine beta-lyase 114706 9786846 HPSJM_00595 Helicobacter pylori SJM180 cystathionine gamma-synthase/cystathionine beta-lyase YP_003928035.1 113564 R 765962 CDS YP_003928036.1 308183903 9786847 complement(114727..115644) 1 NC_014560.1 COG0031 Cysteine synthase; cysteine synthetase 115644 9786847 HPSJM_00600 Helicobacter pylori SJM180 cysteine synthetase YP_003928036.1 114727 R 765962 CDS YP_003928037.1 308183904 9786848 115763..116341 1 NC_014560.1 hypothetical protein 116341 9786848 HPSJM_00605 Helicobacter pylori SJM180 hypothetical protein YP_003928037.1 115763 D 765962 CDS YP_003928038.1 308183905 9786849 complement(116594..118456) 1 NC_014560.1 COG0443 Molecular chaperone; molecular chaperone DnaK 118456 dnaK 9786849 dnaK Helicobacter pylori SJM180 molecular chaperone DnaK YP_003928038.1 116594 R 765962 CDS YP_003928039.1 308183906 9786850 complement(118488..119060) 1 NC_014560.1 COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE 119060 9786850 HPSJM_00615 Helicobacter pylori SJM180 heat shock protein GrpE YP_003928039.1 118488 R 765962 CDS YP_003928040.1 308183907 9786851 complement(119060..119890) 1 NC_014560.1 COG1420 Transcriptional regulator of heat shock gene; heat-inducible transcription repressor 119890 9786851 HPSJM_00620 Helicobacter pylori SJM180 heat-inducible transcription repressor YP_003928040.1 119060 R 765962 CDS YP_003928041.1 308183908 9786852 120099..120737 1 NC_014560.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 120737 9786852 HPSJM_00625 Helicobacter pylori SJM180 hypothetical protein YP_003928041.1 120099 D 765962 CDS YP_003928042.1 308183909 9786853 120758..121054 1 NC_014560.1 hypothetical protein 121054 9786853 HPSJM_00630 Helicobacter pylori SJM180 hypothetical protein YP_003928042.1 120758 D 765962 CDS YP_003928043.1 308183910 9786854 complement(121087..122970) 1 NC_014560.1 COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein 122970 9786854 HPSJM_00635 Helicobacter pylori SJM180 hypothetical protein YP_003928043.1 121087 R 765962 CDS YP_003928044.1 308183911 9786855 complement(123031..124575) 1 NC_014560.1 COG1344 Flagellin and related hook-associated proteins; flagellin B 124575 9786855 HPSJM_00640 Helicobacter pylori SJM180 flagellin B YP_003928044.1 123031 R 765962 CDS YP_003928045.1 308183912 9786856 124741..126951 1 NC_014560.1 COG0550 Topoisomerase IA; DNA topoisomerase I 126951 9786856 HPSJM_00645 Helicobacter pylori SJM180 DNA topoisomerase I YP_003928045.1 124741 D 765962 CDS YP_003928046.1 308183913 9786857 126944..127870 1 NC_014560.1 COG0731 Fe-S oxidoreductases; hypothetical protein 127870 9786857 HPSJM_00650 Helicobacter pylori SJM180 hypothetical protein YP_003928046.1 126944 D 765962 CDS YP_003928047.1 308183914 9786858 complement(128021..129280) 1 NC_014560.1 hypothetical protein 129280 9786858 HPSJM_00655 Helicobacter pylori SJM180 hypothetical protein YP_003928047.1 128021 R 765962 CDS YP_003928048.1 308183915 9786859 complement(129377..131815) 1 NC_014560.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 131815 9786859 HPSJM_00660 Helicobacter pylori SJM180 phosphoenolpyruvate synthase YP_003928048.1 129377 R 765962 CDS YP_003928049.1 308183916 9786860 132018..132131 1 NC_014560.1 hypothetical protein 132131 9786860 HPSJM_00665 Helicobacter pylori SJM180 hypothetical protein YP_003928049.1 132018 D 765962 CDS YP_003928050.1 308183917 9786861 132173..134011 1 NC_014560.1 COG0441 Threonyl-tRNA synthetase; threonyl-tRNA synthetase 134011 thrS 9786861 thrS Helicobacter pylori SJM180 threonyl-tRNA synthetase YP_003928050.1 132173 D 765962 CDS YP_003928051.1 308183918 9786862 134008..134619 1 NC_014560.1 COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 134619 infC 9786862 infC Helicobacter pylori SJM180 translation initiation factor IF-3 YP_003928051.1 134008 D 765962 CDS YP_003928052.1 308183919 9786863 134600..134794 1 NC_014560.1 COG0291 Ribosomal protein L35; 50S ribosomal protein L35 134794 rpmI 9786863 rpmI Helicobacter pylori SJM180 50S ribosomal protein L35 YP_003928052.1 134600 D 765962 CDS YP_003928053.1 308183920 9786864 134889..135239 1 NC_014560.1 COG0292 Ribosomal protein L20; 50S ribosomal protein L20 135239 rplT 9786864 rplT Helicobacter pylori SJM180 50S ribosomal protein L20 YP_003928053.1 134889 D 765962 CDS YP_003928054.1 308183921 9786865 135440..136300 1 NC_014560.1 outer membrane protein HorB 136300 9786865 HPSJM_00690 Helicobacter pylori SJM180 outer membrane protein HorB YP_003928054.1 135440 D 765962 CDS YP_003928055.1 308183922 9786866 136352..136471 1 NC_014560.1 hypothetical protein 136471 9786866 HPSJM_00695 Helicobacter pylori SJM180 hypothetical protein YP_003928055.1 136352 D 765962 CDS YP_003928056.1 308183923 9786867 136647..137078 1 NC_014560.1 hypothetical protein 137078 9786867 HPSJM_00700 Helicobacter pylori SJM180 hypothetical protein YP_003928056.1 136647 D 765962 CDS YP_003928057.1 308183924 9786868 137487..138344 1 NC_014560.1 hypothetical protein 138344 9786868 HPSJM_00705 Helicobacter pylori SJM180 hypothetical protein YP_003928057.1 137487 D 765962 CDS YP_003928058.1 308183925 9786869 complement(138417..138617) 1 NC_014560.1 hypothetical protein 138617 9786869 HPSJM_00710 Helicobacter pylori SJM180 hypothetical protein YP_003928058.1 138417 R 765962 CDS YP_003928059.1 308183926 9786870 complement(139241..140608) 1 NC_014560.1 COG1760 L-serine deaminase; L-serine dehydratase 140608 9786870 HPSJM_00715 Helicobacter pylori SJM180 L-serine dehydratase YP_003928059.1 139241 R 765962 CDS YP_003928060.1 308183927 9786871 complement(140608..141849) 1 NC_014560.1 COG0814 Amino acid permeases; hypothetical protein 141849 9786871 HPSJM_00720 Helicobacter pylori SJM180 hypothetical protein YP_003928060.1 140608 R 765962 CDS YP_003928061.1 308183928 9786872 141912..142004 1 NC_014560.1 hypothetical protein 142004 9786872 HPSJM_00725 Helicobacter pylori SJM180 hypothetical protein YP_003928061.1 141912 D 765962 CDS YP_003928062.1 308183929 9786873 142031..143380 1 NC_014560.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 143380 9786873 HPSJM_00730 Helicobacter pylori SJM180 phospho-2-dehydro-3-deoxyheptonate aldolase YP_003928062.1 142031 D 765962 CDS YP_003928063.1 308183930 9786874 143459..143593 1 NC_014560.1 hypothetical protein 143593 9786874 HPSJM_00735 Helicobacter pylori SJM180 hypothetical protein YP_003928063.1 143459 D 765962 CDS YP_003928064.1 308183931 9786875 143695..143838 1 NC_014560.1 hypothetical protein 143838 9786875 HPSJM_00740 Helicobacter pylori SJM180 hypothetical protein YP_003928064.1 143695 D 765962 CDS YP_003928065.1 308183932 9786876 complement(143824..144282) 1 NC_014560.1 COG1225 Peroxiredoxin; bacterioferritin comigratory protein 144282 9786876 HPSJM_00745 Helicobacter pylori SJM180 bacterioferritin comigratory protein YP_003928065.1 143824 R 765962 CDS YP_003928066.1 308183933 9786877 complement(144292..144927) 1 NC_014560.1 COG1556 Uncharacterized conserved protein; hypothetical protein 144927 9786877 HPSJM_00750 Helicobacter pylori SJM180 hypothetical protein YP_003928066.1 144292 R 765962 CDS YP_003928067.1 308183934 9786878 complement(144920..146365) 1 NC_014560.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster binding protein 146365 9786878 HPSJM_00755 Helicobacter pylori SJM180 iron-sulfur cluster binding protein YP_003928067.1 144920 R 765962 CDS YP_003928068.1 308183935 9786879 complement(146394..147122) 1 NC_014560.1 COG0247 Fe-S oxidoreductase; Fe-S oxidoreductase 147122 9786879 HPSJM_00760 Helicobacter pylori SJM180 Fe-S oxidoreductase YP_003928068.1 146394 R 765962 CDS YP_003928069.1 308183936 9786880 147343..148992 1 NC_014560.1 COG1620 L-lactate permease; L-lactate permease 148992 9786880 HPSJM_00765 Helicobacter pylori SJM180 L-lactate permease YP_003928069.1 147343 D 765962 CDS YP_003928070.1 308183937 9786881 149048..150703 1 NC_014560.1 COG1620 L-lactate permease; L-lactate permease 150703 9786881 HPSJM_00770 Helicobacter pylori SJM180 L-lactate permease YP_003928070.1 149048 D 765962 CDS YP_003928071.1 308183938 9786882 complement(150727..151596) 1 NC_014560.1 COG1194 A/G-specific DNA glycosylase; DNA glycosylase MutY 151596 9786882 HPSJM_00775 Helicobacter pylori SJM180 DNA glycosylase MutY YP_003928071.1 150727 R 765962 CDS YP_003928072.1 308183939 9786883 complement(151714..153162) 1 NC_014560.1 COG0471 Di- and tricarboxylate transporters; hypothetical protein 153162 9786883 HPSJM_00780 Helicobacter pylori SJM180 hypothetical protein YP_003928072.1 151714 R 765962 CDS YP_003928073.1 308183940 9786884 153332..154798 1 NC_014560.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1; cbb3-type cytochrome c oxidase subunit I 154798 9786884 HPSJM_00785 Helicobacter pylori SJM180 cbb3-type cytochrome c oxidase subunit I YP_003928073.1 153332 D 765962 CDS YP_003928074.1 308183941 9786885 154811..155509 1 NC_014560.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; cbb3-type cytochrome c oxidase subunit II 155509 9786885 HPSJM_00790 Helicobacter pylori SJM180 cbb3-type cytochrome c oxidase subunit II YP_003928074.1 154811 D 765962 CDS YP_003928075.1 308183942 9786886 155520..155738 1 NC_014560.1 cytochrome c oxidase subunit Q 155738 9786886 HPSJM_00795 Helicobacter pylori SJM180 cytochrome c oxidase subunit Q YP_003928075.1 155520 D 765962 CDS YP_003928076.1 308183943 9786887 155740..156618 1 NC_014560.1 COG2010 Cytochrome c, mono- and diheme variants; cytochrome c oxidase, cbb3-type, subunit III 156618 9786887 HPSJM_00800 Helicobacter pylori SJM180 cytochrome c oxidase, cbb3-type, subunit III YP_003928076.1 155740 D 765962 CDS YP_003928077.1 308183944 9786888 156629..156835 1 NC_014560.1 hypothetical protein 156835 9786888 HPSJM_00805 Helicobacter pylori SJM180 hypothetical protein YP_003928077.1 156629 D 765962 CDS YP_003928078.1 308183945 9786889 156832..156939 1 NC_014560.1 hypothetical protein 156939 9786889 HPSJM_00810 Helicobacter pylori SJM180 hypothetical protein YP_003928078.1 156832 D 765962 CDS YP_003928079.1 308183946 9786890 156936..157520 1 NC_014560.1 COG0443 Molecular chaperone; hypothetical protein 157520 9786890 HPSJM_00815 Helicobacter pylori SJM180 hypothetical protein YP_003928079.1 156936 D 765962 CDS YP_003928080.1 308183947 9786891 157534..158115 1 NC_014560.1 hypothetical protein 158115 9786891 HPSJM_00820 Helicobacter pylori SJM180 hypothetical protein YP_003928080.1 157534 D 765962 CDS YP_003928081.1 308183948 9786892 158203..158970 1 NC_014560.1 hypothetical protein 158970 9786892 HPSJM_00825 Helicobacter pylori SJM180 hypothetical protein YP_003928081.1 158203 D 765962 CDS YP_003928082.1 308183949 9786893 complement(158967..159830) 1 NC_014560.1 COG2107 Predicted periplasmic solute-binding protein; hypothetical protein 159830 9786893 HPSJM_00830 Helicobacter pylori SJM180 hypothetical protein YP_003928082.1 158967 R 765962 CDS YP_003928083.1 308183950 9786894 159930..160973 1 NC_014560.1 COG0468 RecA/RadA recombinase; recombinase A 160973 recA 9786894 recA Helicobacter pylori SJM180 recombinase A YP_003928083.1 159930 D 765962 CDS YP_003928084.1 308183951 9786895 160986..162266 1 NC_014560.1 COG0148 Enolase; phosphopyruvate hydratase 162266 eno 9786895 eno Helicobacter pylori SJM180 phosphopyruvate hydratase YP_003928084.1 160986 D 765962 CDS YP_003928085.1 308183952 9786896 162259..162534 1 NC_014560.1 hypothetical protein 162534 9786896 HPSJM_00845 Helicobacter pylori SJM180 hypothetical protein YP_003928085.1 162259 D 765962 CDS YP_003928086.1 308183953 9786897 162551..163147 1 NC_014560.1 hypothetical protein 163147 9786897 HPSJM_00850 Helicobacter pylori SJM180 hypothetical protein YP_003928086.1 162551 D 765962 CDS YP_003928087.1 308183954 9786898 163152..163640 1 NC_014560.1 COG0703 Shikimate kinase; shikimate kinase 163640 aroK 9786898 aroK Helicobacter pylori SJM180 shikimate kinase YP_003928087.1 163152 D 765962 CDS YP_003928088.1 308183955 9786899 163662..164618 1 NC_014560.1 general glycosylation pathway protein 164618 9786899 HPSJM_00860 Helicobacter pylori SJM180 general glycosylation pathway protein YP_003928088.1 163662 D 765962 CDS YP_003928089.1 308183956 9786900 complement(164615..165718) 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide1, 2-glycosyltransferase 165718 9786900 HPSJM_00865 Helicobacter pylori SJM180 lipopolysaccharide1, 2-glycosyltransferase YP_003928089.1 164615 R 765962 CDS YP_003928090.1 308183957 9786901 165871..166791 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; Cystein-rich protein D 166791 9786901 HPSJM_00870 Helicobacter pylori SJM180 Cystein-rich protein D YP_003928090.1 165871 D 765962 CDS YP_003928091.1 308183958 9786902 167160..167258 1 NC_014560.1 hypothetical protein 167258 9786902 HPSJM_00875 Helicobacter pylori SJM180 hypothetical protein YP_003928091.1 167160 D 765962 CDS YP_003928092.1 308183959 9786903 complement(167329..168051) 1 NC_014560.1 COG0217 Uncharacterized conserved protein; hypothetical protein 168051 9786903 HPSJM_00880 Helicobacter pylori SJM180 hypothetical protein YP_003928092.1 167329 R 765962 CDS YP_003928093.1 308183960 9786904 complement(168052..169023) 1 NC_014560.1 COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 169023 9786904 HPSJM_00885 Helicobacter pylori SJM180 delta-aminolevulinic acid dehydratase YP_003928093.1 168052 R 765962 CDS YP_003928094.1 308183961 9786905 complement(169045..170373) 1 NC_014560.1 COG0642 Signal transduction histidine kinase; Histidine kinase sensor protein; putative signal peptide 170373 9786905 HPSJM_00890 Helicobacter pylori SJM180 Histidine kinase sensor protein; putative signal peptide YP_003928094.1 169045 R 765962 CDS YP_003928095.1 308183962 9786906 complement(170399..171076) 1 NC_014560.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Transcriptional regulator 171076 9786906 HPSJM_00895 Helicobacter pylori SJM180 Transcriptional regulator YP_003928095.1 170399 R 765962 CDS YP_003928096.1 308183963 9786907 complement(171482..171940) 1 NC_014560.1 hypothetical protein 171940 9786907 HPSJM_00900 Helicobacter pylori SJM180 hypothetical protein YP_003928096.1 171482 R 765962 CDS YP_003928097.1 308183964 9786908 complement(171931..172194) 1 NC_014560.1 COG0457 FOG: TPR repeat; hypothetical protein 172194 9786908 HPSJM_00905 Helicobacter pylori SJM180 hypothetical protein YP_003928097.1 171931 R 765962 CDS YP_003928098.1 308183965 9786909 complement(172227..173507) 1 NC_014560.1 COG0826 Collagenase and related proteases; collagenase 173507 9786909 HPSJM_00910 Helicobacter pylori SJM180 collagenase YP_003928098.1 172227 R 765962 CDS YP_003928099.1 308183966 9786910 complement(173533..174264) 1 NC_014560.1 hypothetical protein 174264 9786910 HPSJM_00915 Helicobacter pylori SJM180 hypothetical protein YP_003928099.1 173533 R 765962 CDS YP_003928100.1 308183967 9786911 complement(174339..175430) 1 NC_014560.1 COG1186 Protein chain release factor B; peptide chain release factor 2 175430 prfB 9786911 prfB Helicobacter pylori SJM180 peptide chain release factor 2 YP_003928100.1 174339 R 765962 CDS YP_003928101.1 308183968 9786912 complement(175491..176666) 1 NC_014560.1 COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein 176666 9786912 HPSJM_00925 Helicobacter pylori SJM180 molybdopterin biosynthesis protein YP_003928101.1 175491 R 765962 CDS YP_003928102.1 308183969 9786913 complement(176676..177443) 1 NC_014560.1 COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 177443 fliR 9786913 fliR Helicobacter pylori SJM180 flagellar biosynthesis protein FliR YP_003928102.1 176676 R 765962 CDS YP_003928103.1 308183970 9786914 complement(177437..178165) 1 NC_014560.1 hypothetical protein 178165 9786914 HPSJM_00935 Helicobacter pylori SJM180 hypothetical protein YP_003928103.1 177437 R 765962 CDS YP_003928104.1 308183971 9786915 complement(178271..178489) 1 NC_014560.1 hypothetical protein 178489 9786915 HPSJM_00940 Helicobacter pylori SJM180 hypothetical protein YP_003928104.1 178271 R 765962 CDS YP_003928105.1 308183972 9786916 178636..179535 1 NC_014560.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; putative peptidyl-prolyl cis-trans isomerase 179535 9786916 HPSJM_00945 Helicobacter pylori SJM180 putative peptidyl-prolyl cis-trans isomerase YP_003928105.1 178636 D 765962 CDS YP_003928106.1 308183973 9786917 179552..180475 1 NC_014560.1 COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 180475 9786917 HPSJM_00950 Helicobacter pylori SJM180 fructose-bisphosphate aldolase YP_003928106.1 179552 D 765962 CDS YP_003928107.1 308183974 9786918 180497..181060 1 NC_014560.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 181060 9786918 HPSJM_00955 Helicobacter pylori SJM180 elongation factor P YP_003928107.1 180497 D 765962 CDS YP_003928108.1 308183975 9786919 181561..182805 1 NC_014560.1 COG0270 Site-specific DNA methylase; DNA-cytosine methyltransferase 182805 9786919 HPSJM_00960 Helicobacter pylori SJM180 DNA-cytosine methyltransferase YP_003928108.1 181561 D 765962 CDS YP_003928109.1 308183976 9786920 182792..183562 1 NC_014560.1 hypothetical protein 183562 9786920 HPSJM_00965 Helicobacter pylori SJM180 hypothetical protein YP_003928109.1 182792 D 765962 CDS YP_003928110.1 308183977 9786921 183537..184883 1 NC_014560.1 COG1401 GTPase subunit of restriction endonuclease; putative restriction enzyme 184883 9786921 HPSJM_00970 Helicobacter pylori SJM180 putative restriction enzyme YP_003928110.1 183537 D 765962 CDS YP_003928111.1 308183978 9786922 184876..186090 1 NC_014560.1 hypothetical protein 186090 9786922 HPSJM_00975 Helicobacter pylori SJM180 hypothetical protein YP_003928111.1 184876 D 765962 CDS YP_003928112.1 308183979 9786923 complement(186160..187188) 1 NC_014560.1 COG2089 Sialic acid synthase; sialic acid synthase 187188 9786923 HPSJM_00980 Helicobacter pylori SJM180 sialic acid synthase YP_003928112.1 186160 R 765962 CDS YP_003928113.1 308183980 9786924 complement(187192..187833) 1 NC_014560.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 187833 9786924 HPSJM_00985 Helicobacter pylori SJM180 ABC transporter, ATP-binding protein YP_003928113.1 187192 R 765962 CDS YP_003928114.1 308183981 9786925 complement(187833..189107) 1 NC_014560.1 COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 189107 9786925 HPSJM_00990 Helicobacter pylori SJM180 apolipoprotein N-acyltransferase YP_003928114.1 187833 R 765962 CDS YP_003928115.1 308183982 9786926 189332..190033 1 NC_014560.1 COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 190033 9786926 HPSJM_00995 Helicobacter pylori SJM180 hypothetical protein YP_003928115.1 189332 D 765962 CDS YP_003928116.1 308183983 9786927 190043..191548 1 NC_014560.1 COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 191548 lysS 9786927 lysS Helicobacter pylori SJM180 lysyl-tRNA synthetase YP_003928116.1 190043 D 765962 CDS YP_003928117.1 308183984 9786928 191548..192798 1 NC_014560.1 COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 192798 9786928 HPSJM_01005 Helicobacter pylori SJM180 serine hydroxymethyltransferase YP_003928117.1 191548 D 765962 CDS YP_003928118.1 308183985 9786929 192809..193351 1 NC_014560.1 hypothetical protein 193351 9786929 HPSJM_01010 Helicobacter pylori SJM180 hypothetical protein YP_003928118.1 192809 D 765962 CDS YP_003928119.1 308183986 9786930 193373..194182 1 NC_014560.1 hypothetical protein 194182 9786930 HPSJM_01015 Helicobacter pylori SJM180 hypothetical protein YP_003928119.1 193373 D 765962 CDS YP_003928120.1 308183987 9786931 complement(194579..195832) 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 195832 9786931 HPSJM_01020 Helicobacter pylori SJM180 hypothetical protein YP_003928120.1 194579 R 765962 CDS YP_003928121.1 308183988 9786932 complement(195829..196278) 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 196278 9786932 HPSJM_01025 Helicobacter pylori SJM180 hypothetical protein YP_003928121.1 195829 R 765962 CDS YP_003928122.1 308183989 9786933 196437..196970 1 NC_014560.1 COG2862 Predicted membrane protein; hypothetical protein 196970 9786933 HPSJM_01030 Helicobacter pylori SJM180 hypothetical protein YP_003928122.1 196437 D 765962 CDS YP_003928123.1 308183990 9786934 complement(196976..198484) 1 NC_014560.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; phospholipase D-family protein 198484 9786934 HPSJM_01035 Helicobacter pylori SJM180 phospholipase D-family protein YP_003928123.1 196976 R 765962 CDS YP_003928124.1 308183991 9786935 complement(198501..199238) 1 NC_014560.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit 199238 frdB 9786935 frdB Helicobacter pylori SJM180 fumarate reductase iron-sulfur subunit YP_003928124.1 198501 R 765962 CDS YP_003928125.1 308183992 9786936 complement(199231..201375) 1 NC_014560.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 201375 9786936 HPSJM_01045 Helicobacter pylori SJM180 fumarate reductase flavoprotein subunit YP_003928125.1 199231 R 765962 CDS YP_003928126.1 308183993 9786937 complement(201385..202152) 1 NC_014560.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; fumarate reductase cytochrome b-556 subunit 202152 9786937 HPSJM_01050 Helicobacter pylori SJM180 fumarate reductase cytochrome b-556 subunit YP_003928126.1 201385 R 765962 CDS YP_003928127.1 308183994 9786938 202365..203069 1 NC_014560.1 COG0149 Triosephosphate isomerase; triosephosphate isomerase 203069 tpiA 9786938 tpiA Helicobacter pylori SJM180 triosephosphate isomerase YP_003928127.1 202365 D 765962 CDS YP_003928128.1 308183995 9786939 203079..203912 1 NC_014560.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl carrier protein) reductase 203912 9786939 HPSJM_01060 Helicobacter pylori SJM180 enoyl-(acyl carrier protein) reductase YP_003928128.1 203079 D 765962 CDS YP_003928129.1 308183996 9786940 203912..204922 1 NC_014560.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 204922 lpxD 9786940 lpxD Helicobacter pylori SJM180 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003928129.1 203912 D 765962 CDS YP_003928130.1 308183997 9786941 204987..206144 1 NC_014560.1 COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 206144 9786941 HPSJM_01070 Helicobacter pylori SJM180 S-adenosylmethionine synthetase YP_003928130.1 204987 D 765962 CDS YP_003928131.1 308183998 9786942 206211..206624 1 NC_014560.1 COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase 206624 ndk 9786942 ndk Helicobacter pylori SJM180 nucleoside diphosphate kinase YP_003928131.1 206211 D 765962 CDS YP_003928132.1 308183999 9786943 206649..207005 1 NC_014560.1 hypothetical protein 207005 9786943 HPSJM_01080 Helicobacter pylori SJM180 hypothetical protein YP_003928132.1 206649 D 765962 CDS YP_003928133.1 308184000 9786944 207021..207167 1 NC_014560.1 COG0333 Ribosomal protein L32; 50S ribosomal protein L32 207167 rpmF 9786944 rpmF Helicobacter pylori SJM180 50S ribosomal protein L32 YP_003928133.1 207021 D 765962 CDS YP_003928134.1 308184001 9786945 207245..208264 1 NC_014560.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 208264 9786945 HPSJM_01090 Helicobacter pylori SJM180 putative glycerol-3-phosphate acyltransferase PlsX YP_003928134.1 207245 D 765962 CDS YP_003928135.1 308184002 9786946 208288..209280 1 NC_014560.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 209280 9786946 HPSJM_01095 Helicobacter pylori SJM180 3-oxoacyl-(acyl carrier protein) synthase III YP_003928135.1 208288 D 765962 CDS YP_003928136.1 308184003 9786947 209301..209603 1 NC_014560.1 hypothetical protein 209603 9786947 HPSJM_01100 Helicobacter pylori SJM180 hypothetical protein YP_003928136.1 209301 D 765962 CDS YP_003928137.1 308184004 9786948 209745..209837 1 NC_014560.1 hypothetical protein 209837 9786948 HPSJM_01105 Helicobacter pylori SJM180 hypothetical protein YP_003928137.1 209745 D 765962 CDS YP_003928138.1 308184005 9786949 complement(210274..210657) 1 NC_014560.1 hypothetical protein 210657 9786949 HPSJM_01110 Helicobacter pylori SJM180 hypothetical protein YP_003928138.1 210274 R 765962 CDS YP_003928139.1 308184006 9786950 213924..215030 1 NC_014560.1 COG0489 ATPases involved in chromosome partitioning; ATP-binding protein 215030 9786950 HPSJM_01125 Helicobacter pylori SJM180 ATP-binding protein YP_003928139.1 213924 D 765962 CDS YP_003928140.1 308184007 9786951 complement(215045..216076) 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; LPS 1, 2-glycosyltransferase 216076 9786951 HPSJM_01130 Helicobacter pylori SJM180 LPS 1, 2-glycosyltransferase YP_003928140.1 215045 R 765962 CDS YP_003928141.1 308184008 9786952 complement(216087..216215) 1 NC_014560.1 LPS 1, 2-glycosyltransferase 216215 9786952 HPSJM_01135 Helicobacter pylori SJM180 LPS 1, 2-glycosyltransferase YP_003928141.1 216087 R 765962 CDS YP_003928142.1 308184009 9786953 216369..217721 1 NC_014560.1 hypothetical protein 217721 9786953 HPSJM_01140 Helicobacter pylori SJM180 hypothetical protein YP_003928142.1 216369 D 765962 CDS YP_003928143.1 308184010 9786954 217826..219691 1 NC_014560.1 COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 219691 9786954 HPSJM_01145 Helicobacter pylori SJM180 heat shock protein 90 YP_003928143.1 217826 D 765962 CDS YP_003928144.1 308184011 9786955 complement(219738..219878) 1 NC_014560.1 hypothetical protein 219878 9786955 HPSJM_01150 Helicobacter pylori SJM180 hypothetical protein YP_003928144.1 219738 R 765962 CDS YP_003928145.1 308184012 9786956 complement(220027..220779) 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 220779 9786956 HPSJM_01155 Helicobacter pylori SJM180 hypothetical protein YP_003928145.1 220027 R 765962 CDS YP_003928146.1 308184013 9786957 complement(221024..221236) 1 NC_014560.1 hypothetical protein 221236 9786957 HPSJM_01160 Helicobacter pylori SJM180 hypothetical protein YP_003928146.1 221024 R 765962 CDS YP_003928147.1 308184014 9786958 complement(221237..222388) 1 NC_014560.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 222388 9786958 HPSJM_01165 Helicobacter pylori SJM180 succinyl-diaminopimelate desuccinylase YP_003928147.1 221237 R 765962 CDS YP_003928148.1 308184015 9786959 complement(222399..224264) 1 NC_014560.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 224264 9786959 HPSJM_01170 Helicobacter pylori SJM180 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_003928148.1 222399 R 765962 CDS YP_003928149.1 308184016 9786960 224360..226018 1 NC_014560.1 COG0471 Di- and tricarboxylate transporters; sodium-dependent transporter (huNaDC-1) 226018 9786960 HPSJM_01175 Helicobacter pylori SJM180 sodium-dependent transporter (huNaDC-1) YP_003928149.1 224360 D 765962 CDS YP_003928150.1 308184017 9786961 226031..226831 1 NC_014560.1 COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 226831 9786961 HPSJM_01180 Helicobacter pylori SJM180 phosphatidate cytidylyltransferase YP_003928150.1 226031 D 765962 CDS YP_003928151.1 308184018 9786962 226832..227938 1 NC_014560.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 227938 9786962 HPSJM_01185 Helicobacter pylori SJM180 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003928151.1 226832 D 765962 CDS YP_003928152.1 308184019 9786963 227990..228283 1 NC_014560.1 hypothetical protein 228283 9786963 HPSJM_01190 Helicobacter pylori SJM180 hypothetical protein YP_003928152.1 227990 D 765962 CDS YP_003928153.1 308184020 9786964 228436..229119 1 NC_014560.1 hypothetical protein 229119 9786964 HPSJM_01195 Helicobacter pylori SJM180 hypothetical protein YP_003928153.1 228436 D 765962 CDS YP_003928154.1 308184021 9786965 complement(229189..229740) 1 NC_014560.1 COG1881 Phospholipid-binding protein; hypothetical protein 229740 9786965 HPSJM_01200 Helicobacter pylori SJM180 hypothetical protein YP_003928154.1 229189 R 765962 CDS YP_003928155.1 308184022 9786966 229885..230346 1 NC_014560.1 hypothetical protein 230346 9786966 HPSJM_01205 Helicobacter pylori SJM180 hypothetical protein YP_003928155.1 229885 D 765962 CDS YP_003928156.1 308184023 9786967 230521..231684 1 NC_014560.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 231684 9786967 HPSJM_01210 Helicobacter pylori SJM180 cysteine desulfurase YP_003928156.1 230521 D 765962 CDS YP_003928157.1 308184024 9786968 231706..232686 1 NC_014560.1 COG0822 NifU homolog involved in Fe-S cluster formation; nifU-like protein 232686 9786968 HPSJM_01215 Helicobacter pylori SJM180 nifU-like protein YP_003928157.1 231706 D 765962 CDS YP_003928158.1 308184025 9786969 232845..233078 1 NC_014560.1 hypothetical protein 233078 9786969 HPSJM_01220 Helicobacter pylori SJM180 hypothetical protein YP_003928158.1 232845 D 765962 CDS YP_003928159.1 308184026 9786970 233191..234537 1 NC_014560.1 COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 234537 9786970 HPSJM_01225 Helicobacter pylori SJM180 DNA repair protein RadA YP_003928159.1 233191 D 765962 CDS YP_003928160.1 308184027 9786971 234661..235740 1 NC_014560.1 COG0225 Peptide methionine sulfoxide reductase; bifunctional methioninesulfoxide reductaseA/B protein 235740 9786971 HPSJM_01230 Helicobacter pylori SJM180 bifunctional methioninesulfoxide reductaseA/B protein YP_003928160.1 234661 D 765962 CDS YP_003928161.1 308184028 9786972 complement(235895..236011) 1 NC_014560.1 hypothetical protein 236011 9786972 HPSJM_01235 Helicobacter pylori SJM180 hypothetical protein YP_003928161.1 235895 R 765962 CDS YP_003928162.1 308184029 9786973 complement(236128..236961) 1 NC_014560.1 COG0730 Predicted permeases; hypothetical protein 236961 9786973 HPSJM_01240 Helicobacter pylori SJM180 hypothetical protein YP_003928162.1 236128 R 765962 CDS YP_003928163.1 308184030 9786974 236960..237073 1 NC_014560.1 hypothetical protein 237073 9786974 HPSJM_01245 Helicobacter pylori SJM180 hypothetical protein YP_003928163.1 236960 D 765962 CDS YP_003928164.1 308184031 9786975 complement(237080..237181) 1 NC_014560.1 hypothetical protein 237181 9786975 HPSJM_01250 Helicobacter pylori SJM180 hypothetical protein YP_003928164.1 237080 R 765962 CDS YP_003928165.1 308184032 9786976 complement(237165..239252) 1 NC_014560.1 putative Outer membrane protein 239252 9786976 HPSJM_01255 Helicobacter pylori SJM180 putative Outer membrane protein YP_003928165.1 237165 R 765962 CDS YP_003928166.1 308184033 9786977 239496..240653 1 NC_014560.1 COG0659 Sulfate permease and related transporters (MFS superfamily); hypothetical protein 240653 9786977 HPSJM_01260 Helicobacter pylori SJM180 hypothetical protein YP_003928166.1 239496 D 765962 CDS YP_003928167.1 308184034 9786979 complement(240896..242344) 1 NC_014560.1 outer membrane protein (omp6) 242344 9786979 HPSJM_01270 Helicobacter pylori SJM180 outer membrane protein (omp6) YP_003928167.1 240896 R 765962 CDS YP_003928168.1 308184035 9786980 complement(242540..243271) 1 NC_014560.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase 243271 9786980 HPSJM_01275 Helicobacter pylori SJM180 3-deoxy-manno-octulosonate cytidylyltransferase YP_003928168.1 242540 R 765962 CDS YP_003928169.1 308184036 9786981 243383..244180 1 NC_014560.1 COG1651 Protein-disulfide isomerase; hypothetical protein 244180 9786981 HPSJM_01280 Helicobacter pylori SJM180 hypothetical protein YP_003928169.1 243383 D 765962 CDS YP_003928170.1 308184037 9786982 244195..244845 1 NC_014560.1 hypothetical protein 244845 9786982 HPSJM_01285 Helicobacter pylori SJM180 hypothetical protein YP_003928170.1 244195 D 765962 CDS YP_003928171.1 308184038 9786983 244869..246041 1 NC_014560.1 COG0754 Glutathionylspermidine synthase; glutathione spermidine synthetase 246041 9786983 HPSJM_01290 Helicobacter pylori SJM180 glutathione spermidine synthetase YP_003928171.1 244869 D 765962 CDS YP_003928172.1 308184039 9786984 246041..246571 1 NC_014560.1 integral membrane protein 246571 9786984 HPSJM_01295 Helicobacter pylori SJM180 integral membrane protein YP_003928172.1 246041 D 765962 CDS YP_003928173.1 308184040 9786985 complement(247292..248359) 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; Cysteine-rich protein E; putative beta-lactamase HcpE precursor 248359 9786985 HPSJM_01300 Helicobacter pylori SJM180 Cysteine-rich protein E; putative beta-lactamase HcpE precursor YP_003928173.1 247292 R 765962 CDS YP_003928174.1 308184041 9786986 complement(248469..248840) 1 NC_014560.1 hypothetical protein 248840 9786986 HPSJM_01305 Helicobacter pylori SJM180 hypothetical protein YP_003928174.1 248469 R 765962 CDS YP_003928175.1 308184042 9786987 complement(248840..249760) 1 NC_014560.1 COG0181 Porphobilinogen deaminase; porphobilinogen deaminase 249760 hemC 9786987 hemC Helicobacter pylori SJM180 porphobilinogen deaminase YP_003928175.1 248840 R 765962 CDS YP_003928176.1 308184043 9786988 complement(249771..251504) 1 NC_014560.1 COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase 251504 9786988 HPSJM_01315 Helicobacter pylori SJM180 prolyl-tRNA synthetase YP_003928176.1 249771 R 765962 CDS YP_003928177.1 308184044 9786989 complement(251508..252857) 1 NC_014560.1 COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase 252857 hemA 9786989 hemA Helicobacter pylori SJM180 glutamyl-tRNA reductase YP_003928177.1 251508 R 765962 CDS YP_003928178.1 308184045 9786990 complement(252857..253780) 1 NC_014560.1 COG0142 Geranylgeranyl pyrophosphate synthase; putative octaprenyl-diphosphate synthase 253780 9786990 HPSJM_01325 Helicobacter pylori SJM180 putative octaprenyl-diphosphate synthase YP_003928178.1 252857 R 765962 CDS YP_003928179.1 308184046 9786991 complement(253790..254185) 1 NC_014560.1 hypothetical protein 254185 9786991 HPSJM_01330 Helicobacter pylori SJM180 hypothetical protein YP_003928179.1 253790 R 765962 CDS YP_003928180.1 308184047 9786992 complement(254178..254462) 1 NC_014560.1 hypothetical protein 254462 9786992 HPSJM_01335 Helicobacter pylori SJM180 hypothetical protein YP_003928180.1 254178 R 765962 CDS YP_003928181.1 308184048 9786993 complement(254483..254917) 1 NC_014560.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Neutrophil activating protein NapA (bacterioferritin) 254917 9786993 HPSJM_01340 Helicobacter pylori SJM180 Neutrophil activating protein NapA (bacterioferritin) YP_003928181.1 254483 R 765962 CDS YP_003928182.1 308184049 9786994 complement(255125..256270) 1 NC_014560.1 COG0642 Signal transduction histidine kinase; histidine kinase sensor protein 256270 9786994 HPSJM_01345 Helicobacter pylori SJM180 histidine kinase sensor protein YP_003928182.1 255125 R 765962 CDS YP_003928183.1 308184050 9786995 complement(256267..256584) 1 NC_014560.1 hypothetical protein 256584 9786995 HPSJM_01350 Helicobacter pylori SJM180 hypothetical protein YP_003928183.1 256267 R 765962 CDS YP_003928184.1 308184051 9786996 complement(256581..257609) 1 NC_014560.1 COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein 257609 flgI 9786996 flgI Helicobacter pylori SJM180 flagellar basal body P-ring protein YP_003928184.1 256581 R 765962 CDS YP_003928185.1 308184052 9786997 257798..259276 1 NC_014560.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 259276 9786997 HPSJM_01360 Helicobacter pylori SJM180 ATP-dependent RNA helicase YP_003928185.1 257798 D 765962 CDS YP_003928186.1 308184053 9786998 259297..260385 1 NC_014560.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 260385 9786998 HPSJM_01365 Helicobacter pylori SJM180 hypothetical protein YP_003928186.1 259297 D 765962 CDS YP_003928187.1 308184054 9786999 260392..260931 1 NC_014560.1 hypothetical protein 260931 9786999 HPSJM_01370 Helicobacter pylori SJM180 hypothetical protein YP_003928187.1 260392 D 765962 CDS YP_003928188.1 308184055 9787000 complement(261015..262565) 1 NC_014560.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; oligopeptide permease ATPase protein 262565 9787000 HPSJM_01375 Helicobacter pylori SJM180 oligopeptide permease ATPase protein YP_003928188.1 261015 R 765962 CDS YP_003928189.1 308184056 9787001 complement(262575..263597) 1 NC_014560.1 COG4239 ABC-type uncharacterized transport system, permease component; oligopeptide permease integral membrane protein 263597 9787001 HPSJM_01380 Helicobacter pylori SJM180 oligopeptide permease integral membrane protein YP_003928189.1 262575 R 765962 CDS YP_003928190.1 308184057 9787003 263864..263956 1 NC_014560.1 hypothetical protein 263956 9787003 HPSJM_01385 Helicobacter pylori SJM180 hypothetical protein YP_003928190.1 263864 D 765962 CDS YP_003928191.1 308184058 9787004 263937..265394 1 NC_014560.1 Outer membrane protein HopF; putative signal peptide 265394 9787004 HPSJM_01390 Helicobacter pylori SJM180 Outer membrane protein HopF; putative signal peptide YP_003928191.1 263937 D 765962 CDS YP_003928192.1 308184059 9787005 265407..266831 1 NC_014560.1 Outer membrane protein HopG; putative signal peptide 266831 9787005 HPSJM_01395 Helicobacter pylori SJM180 Outer membrane protein HopG; putative signal peptide YP_003928192.1 265407 D 765962 CDS YP_003928193.1 308184060 9787006 266930..268165 1 NC_014560.1 COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 268165 9787006 HPSJM_01400 Helicobacter pylori SJM180 adenylosuccinate synthetase YP_003928193.1 266930 D 765962 CDS YP_003928194.1 308184061 9787007 268162..268590 1 NC_014560.1 hypothetical protein 268590 9787007 HPSJM_01405 Helicobacter pylori SJM180 hypothetical protein YP_003928194.1 268162 D 765962 CDS YP_003928195.1 308184062 9787008 268583..269242 1 NC_014560.1 COG3334 Uncharacterized conserved protein; conserved hypothetical secreted protein 269242 9787008 HPSJM_01410 Helicobacter pylori SJM180 conserved hypothetical secreted protein YP_003928195.1 268583 D 765962 CDS YP_003928196.1 308184063 9787009 269239..270288 1 NC_014560.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1; hypothetical protein 270288 9787009 HPSJM_01415 Helicobacter pylori SJM180 hypothetical protein YP_003928196.1 269239 D 765962 CDS YP_003928197.1 308184064 9787010 270311..271573 1 NC_014560.1 COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 271573 xseA 9787010 xseA Helicobacter pylori SJM180 exodeoxyribonuclease VII large subunit YP_003928197.1 270311 D 765962 CDS YP_003928198.1 308184065 9787011 271823..272392 1 NC_014560.1 Endonuclease MjaVIP 272392 9787011 HPSJM_01425 Helicobacter pylori SJM180 Endonuclease MjaVIP YP_003928198.1 271823 D 765962 CDS YP_003928199.1 308184066 9787012 272389..273147 1 NC_014560.1 COG0863 DNA modification methylase; adenine specific DNA methyltransferase (hpaim) 273147 9787012 HPSJM_01430 Helicobacter pylori SJM180 adenine specific DNA methyltransferase (hpaim) YP_003928199.1 272389 D 765962 CDS YP_003928200.1 308184067 9787013 273220..275790 1 NC_014560.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent protease binding subunit (clpB) 275790 9787013 HPSJM_01435 Helicobacter pylori SJM180 ATP-dependent protease binding subunit (clpB) YP_003928200.1 273220 D 765962 CDS YP_003928201.1 308184068 9787014 275846..276565 1 NC_014560.1 COG0785 Cytochrome c biogenesis protein; cytochrome c biogenesis protein 276565 9787014 HPSJM_01440 Helicobacter pylori SJM180 cytochrome c biogenesis protein YP_003928201.1 275846 D 765962 CDS YP_003928202.1 308184069 9787015 276575..277711 1 NC_014560.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; dihydroorotase 277711 9787015 HPSJM_01445 Helicobacter pylori SJM180 dihydroorotase YP_003928202.1 276575 D 765962 CDS YP_003928203.1 308184070 9787016 277696..278925 1 NC_014560.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase 278925 9787016 HPSJM_01450 Helicobacter pylori SJM180 chlorohydrolase YP_003928203.1 277696 D 765962 CDS YP_003928204.1 308184071 9787017 278986..279228 1 NC_014560.1 hypothetical protein 279228 9787017 HPSJM_01455 Helicobacter pylori SJM180 hypothetical protein YP_003928204.1 278986 D 765962 CDS YP_003928205.1 308184072 9787018 279238..280551 1 NC_014560.1 COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 280551 9787018 HPSJM_01460 Helicobacter pylori SJM180 (dimethylallyl)adenosine tRNA methylthiotransferase YP_003928205.1 279238 D 765962 CDS YP_003928206.1 308184073 9787019 280585..281238 1 NC_014560.1 COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein 281238 9787019 HPSJM_01465 Helicobacter pylori SJM180 hypothetical protein YP_003928206.1 280585 D 765962 CDS YP_003928207.1 308184074 9787020 281231..282214 1 NC_014560.1 hypothetical protein 282214 9787020 HPSJM_01470 Helicobacter pylori SJM180 hypothetical protein YP_003928207.1 281231 D 765962 CDS YP_003928208.1 308184075 9787021 282204..282737 1 NC_014560.1 hypothetical protein 282737 9787021 HPSJM_01475 Helicobacter pylori SJM180 hypothetical protein YP_003928208.1 282204 D 765962 CDS YP_003928209.1 308184076 9787022 282734..283273 1 NC_014560.1 hypothetical protein 283273 9787022 HPSJM_01480 Helicobacter pylori SJM180 hypothetical protein YP_003928209.1 282734 D 765962 CDS YP_003928210.1 308184077 9787023 283289..283687 1 NC_014560.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 283687 9787023 HPSJM_01485 Helicobacter pylori SJM180 hypothetical protein YP_003928210.1 283289 D 765962 CDS YP_003928211.1 308184078 9787024 283724..285019 1 NC_014560.1 COG0457 FOG: TPR repeat; ATP-dependent nuclease 285019 9787024 HPSJM_01490 Helicobacter pylori SJM180 ATP-dependent nuclease YP_003928211.1 283724 D 765962 CDS YP_003928212.1 308184079 9787025 285007..285582 1 NC_014560.1 hypothetical protein 285582 9787025 HPSJM_01495 Helicobacter pylori SJM180 hypothetical protein YP_003928212.1 285007 D 765962 CDS YP_003928213.1 308184080 9787026 285622..285873 1 NC_014560.1 COG1145 Ferredoxin; ferrodoxin 285873 9787026 HPSJM_01500 Helicobacter pylori SJM180 ferrodoxin YP_003928213.1 285622 D 765962 CDS YP_003928214.1 308184081 9787027 285883..287337 1 NC_014560.1 COG0248 Exopolyphosphatase; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase 287337 9787027 HPSJM_01505 Helicobacter pylori SJM180 guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase YP_003928214.1 285883 D 765962 CDS YP_003928215.1 308184082 9787028 287334..288356 1 NC_014560.1 COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase-1 288356 9787028 HPSJM_01510 Helicobacter pylori SJM180 lipopolysaccharide heptosyltransferase-1 YP_003928215.1 287334 D 765962 CDS YP_003928216.1 308184083 9787029 288353..289339 1 NC_014560.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 289339 9787029 HPSJM_01515 Helicobacter pylori SJM180 lipid A biosynthesis lauroyl acyltransferase YP_003928216.1 288353 D 765962 CDS YP_003928217.1 308184084 9787030 complement(289594..290709) 1 NC_014560.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 290709 tgt 9787030 tgt Helicobacter pylori SJM180 queuine tRNA-ribosyltransferase YP_003928217.1 289594 R 765962 CDS YP_003928218.1 308184085 9787031 290766..292202 1 NC_014560.1 COG3400 Uncharacterized protein conserved in bacteria; hypothetical protein 292202 9787031 HPSJM_01525 Helicobacter pylori SJM180 hypothetical protein YP_003928218.1 290766 D 765962 CDS YP_003928219.1 308184086 9787032 292207..293238 1 NC_014560.1 COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 293238 aroB 9787032 aroB Helicobacter pylori SJM180 3-dehydroquinate synthase YP_003928219.1 292207 D 765962 CDS YP_003928220.1 308184087 9787033 293229..294800 1 NC_014560.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 294800 9787033 HPSJM_01535 Helicobacter pylori SJM180 hypothetical protein YP_003928220.1 293229 D 765962 CDS YP_003928221.1 308184088 9787034 294797..296053 1 NC_014560.1 COG0621 2-methylthioadenine synthetase; hypothetical protein 296053 9787034 HPSJM_01540 Helicobacter pylori SJM180 hypothetical protein YP_003928221.1 294797 D 765962 CDS YP_003928222.1 308184089 9787035 296040..297692 1 NC_014560.1 COG0465 ATP-dependent Zn proteases; cell division protein (ftsH) 297692 9787035 HPSJM_01545 Helicobacter pylori SJM180 cell division protein (ftsH) YP_003928222.1 296040 D 765962 CDS YP_003928223.1 308184090 9787036 297695..298213 1 NC_014560.1 hypothetical protein 298213 9787036 HPSJM_01550 Helicobacter pylori SJM180 hypothetical protein YP_003928223.1 297695 D 765962 CDS YP_003928224.1 308184091 9787037 298226..298699 1 NC_014560.1 hypothetical protein 298699 9787037 HPSJM_01555 Helicobacter pylori SJM180 hypothetical protein YP_003928224.1 298226 D 765962 CDS YP_003928225.1 308184092 9787038 298767..307454 1 NC_014560.1 toxin-like outer membrane protein 307454 9787038 HPSJM_01560 Helicobacter pylori SJM180 toxin-like outer membrane protein YP_003928225.1 298767 D 765962 CDS YP_003928226.1 308184093 9787039 307502..308719 1 NC_014560.1 COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 308719 9787039 HPSJM_01565 Helicobacter pylori SJM180 diaminopimelate decarboxylase YP_003928226.1 307502 D 765962 CDS YP_003928227.1 308184094 9787040 308724..309014 1 NC_014560.1 COG1605 Chorismate mutase; hypothetical protein 309014 9787040 HPSJM_01570 Helicobacter pylori SJM180 hypothetical protein YP_003928227.1 308724 D 765962 CDS YP_003928228.1 308184095 9787041 309027..309899 1 NC_014560.1 COG4866 Uncharacterized conserved protein; hypothetical protein 309899 9787041 HPSJM_01575 Helicobacter pylori SJM180 hypothetical protein YP_003928228.1 309027 D 765962 CDS YP_003928229.1 308184096 9787042 309900..311579 1 NC_014560.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; para-amino benzoate synthetase 311579 9787042 HPSJM_01580 Helicobacter pylori SJM180 para-amino benzoate synthetase YP_003928229.1 309900 D 765962 CDS YP_003928230.1 308184097 9787043 311773..312792 1 NC_014560.1 COG0388 Predicted amidohydrolase; acylamide amidohydrolase 312792 amiE 9787043 amiE Helicobacter pylori SJM180 acylamide amidohydrolase YP_003928230.1 311773 D 765962 CDS YP_003928231.1 308184098 9787044 complement(312889..315375) 1 NC_014560.1 COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 315375 flgL 9787044 flgL Helicobacter pylori SJM180 flagellar hook-associated protein FlgL YP_003928231.1 312889 R 765962 CDS YP_003928232.1 308184099 9787045 315425..315526 1 NC_014560.1 hypothetical protein 315526 9787045 HPSJM_01595 Helicobacter pylori SJM180 hypothetical protein YP_003928232.1 315425 D 765962 CDS YP_003928233.1 308184100 9787046 315618..315932 1 NC_014560.1 COG0261 Ribosomal protein L21; 50S ribosomal protein L21 315932 rplU 9787046 rplU Helicobacter pylori SJM180 50S ribosomal protein L21 YP_003928233.1 315618 D 765962 CDS YP_003928234.1 308184101 9787047 315947..316213 1 NC_014560.1 COG0211 Ribosomal protein L27; 50S ribosomal protein L27 316213 rpmA 9787047 rpmA Helicobacter pylori SJM180 50S ribosomal protein L27 YP_003928234.1 315947 D 765962 CDS YP_003928235.1 308184102 9787048 316330..317979 1 NC_014560.1 COG0747 ABC-type dipeptide transport system, periplasmic component; periplasmic dipeptide-binding protein 317979 9787048 HPSJM_01610 Helicobacter pylori SJM180 periplasmic dipeptide-binding protein YP_003928235.1 316330 D 765962 CDS YP_003928236.1 308184103 9787049 317990..318994 1 NC_014560.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transport system permease protein 318994 9787049 HPSJM_01615 Helicobacter pylori SJM180 dipeptide transport system permease protein YP_003928236.1 317990 D 765962 CDS YP_003928237.1 308184104 9787050 318994..319851 1 NC_014560.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide permease protein 319851 9787050 HPSJM_01620 Helicobacter pylori SJM180 dipeptide permease protein YP_003928237.1 318994 D 765962 CDS YP_003928238.1 308184105 9787051 319863..320726 1 NC_014560.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 320726 9787051 HPSJM_01625 Helicobacter pylori SJM180 ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 YP_003928238.1 319863 D 765962 CDS YP_003928239.1 308184106 9787052 320723..321529 1 NC_014560.1 COG4608 ABC-type oligopeptide transport system, ATPase component; ABC-type transport system, ATP binding protein; putative dipeptide transporter protein 5 321529 9787052 HPSJM_01630 Helicobacter pylori SJM180 ABC-type transport system, ATP binding protein; putative dipeptide transporter protein 5 YP_003928239.1 320723 D 765962 CDS YP_003928240.1 308184107 9787053 321549..322631 1 NC_014560.1 COG0536 Predicted GTPase; GTPase ObgE 322631 obgE 9787053 obgE Helicobacter pylori SJM180 GTPase ObgE YP_003928240.1 321549 D 765962 CDS YP_003928241.1 308184108 9787054 322668..323669 1 NC_014560.1 hypothetical protein 323669 9787054 HPSJM_01640 Helicobacter pylori SJM180 hypothetical protein YP_003928241.1 322668 D 765962 CDS YP_003928242.1 308184109 9787055 323908..324462 1 NC_014560.1 hypothetical protein 324462 9787055 HPSJM_01645 Helicobacter pylori SJM180 hypothetical protein YP_003928242.1 323908 D 765962 CDS YP_003928243.1 308184110 9787056 324472..325764 1 NC_014560.1 COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 325764 9787056 HPSJM_01650 Helicobacter pylori SJM180 glutamate-1-semialdehyde aminotransferase YP_003928243.1 324472 D 765962 CDS YP_003928244.1 308184111 9787057 325761..326033 1 NC_014560.1 hypothetical protein 326033 9787057 HPSJM_01655 Helicobacter pylori SJM180 hypothetical protein YP_003928244.1 325761 D 765962 CDS YP_003928245.1 308184112 9787058 326049..326450 1 NC_014560.1 hypothetical protein 326450 9787058 HPSJM_01660 Helicobacter pylori SJM180 hypothetical protein YP_003928245.1 326049 D 765962 CDS YP_003928246.1 308184113 9787059 326534..327412 1 NC_014560.1 COG0388 Predicted amidohydrolase; N-carbamoyl-D-amino acid amidohydrolase 327412 9787059 HPSJM_01665 Helicobacter pylori SJM180 N-carbamoyl-D-amino acid amidohydrolase YP_003928246.1 326534 D 765962 CDS YP_003928247.1 308184114 9787060 327425..328306 1 NC_014560.1 COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 328306 9787060 HPSJM_01670 Helicobacter pylori SJM180 hypothetical protein YP_003928247.1 327425 D 765962 CDS YP_003928248.1 308184115 9787061 328353..328739 1 NC_014560.1 hypothetical protein 328739 9787061 HPSJM_01675 Helicobacter pylori SJM180 hypothetical protein YP_003928248.1 328353 D 765962 CDS YP_003928249.1 308184116 9787062 328739..329704 1 NC_014560.1 COG0523 Putative GTPases (G3E family); ATP-binding protein 329704 9787062 HPSJM_01680 Helicobacter pylori SJM180 ATP-binding protein YP_003928249.1 328739 D 765962 CDS YP_003928250.1 308184117 9787063 complement(329710..330855) 1 NC_014560.1 COG0477 Permeases of the major facilitator superfamily; nitrite extrusion protein 330855 9787063 HPSJM_01685 Helicobacter pylori SJM180 nitrite extrusion protein YP_003928250.1 329710 R 765962 CDS YP_003928251.1 308184118 9787064 complement(331649..332011) 1 NC_014560.1 hypothetical protein 332011 9787064 HPSJM_01690 Helicobacter pylori SJM180 hypothetical protein YP_003928251.1 331649 R 765962 CDS YP_003928252.1 308184119 9787065 complement(332243..332431) 1 NC_014560.1 hypothetical protein 332431 9787065 HPSJM_01695 Helicobacter pylori SJM180 hypothetical protein YP_003928252.1 332243 R 765962 CDS YP_003928253.1 308184120 9787066 complement(332496..334739) 1 NC_014560.1 outer membrane protein BabA 334739 9787066 HPSJM_01700 Helicobacter pylori SJM180 outer membrane protein BabA YP_003928253.1 332496 R 765962 CDS YP_003928254.1 308184121 9787067 complement(335023..335778) 1 NC_014560.1 COG0748 Putative heme iron utilization protein; putative heme iron utilization protein 335778 9787067 HPSJM_01705 Helicobacter pylori SJM180 putative heme iron utilization protein YP_003928254.1 335023 R 765962 CDS YP_003928255.1 308184122 9787068 complement(335839..337464) 1 NC_014560.1 COG0018 Arginyl-tRNA synthetase; arginyl-tRNA synthetase 337464 argS 9787068 argS Helicobacter pylori SJM180 arginyl-tRNA synthetase YP_003928255.1 335839 R 765962 CDS YP_003928256.1 308184123 9787069 complement(337467..337706) 1 NC_014560.1 COG1826 Sec-independent protein secretion pathway components; Sec-independent protein translocase protein tatA/E-like protein 337706 9787069 HPSJM_01715 Helicobacter pylori SJM180 Sec-independent protein translocase protein tatA/E-like protein YP_003928256.1 337467 R 765962 CDS YP_003928257.1 308184124 9787070 complement(337777..338397) 1 NC_014560.1 COG0194 Guanylate kinase; guanylate kinase 338397 gmk 9787070 gmk Helicobacter pylori SJM180 guanylate kinase YP_003928257.1 337777 R 765962 CDS YP_003928258.1 308184125 9787071 complement(338390..339778) 1 NC_014560.1 poly E-rich protein 339778 9787071 HPSJM_01725 Helicobacter pylori SJM180 poly E-rich protein YP_003928258.1 338390 R 765962 CDS YP_003928259.1 308184126 9787072 339926..340468 1 NC_014560.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; nuclease NucT 340468 9787072 HPSJM_01730 Helicobacter pylori SJM180 nuclease NucT YP_003928259.1 339926 D 765962 CDS YP_003928260.1 308184127 9787073 complement(340475..341227) 1 NC_014560.1 outer membrane protein HorC 341227 9787073 HPSJM_01735 Helicobacter pylori SJM180 outer membrane protein HorC YP_003928260.1 340475 R 765962 CDS YP_003928261.1 308184128 9787074 341353..342066 1 NC_014560.1 COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 342066 flgH 9787074 flgH Helicobacter pylori SJM180 flagellar basal body L-ring protein YP_003928261.1 341353 D 765962 CDS YP_003928262.1 308184129 9787075 342084..342767 1 NC_014560.1 COG1083 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 342767 9787075 HPSJM_01745 Helicobacter pylori SJM180 CMP-N-acetylneuraminic acid synthetase YP_003928262.1 342084 D 765962 CDS YP_003928263.1 308184130 9787076 342758..343630 1 NC_014560.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase; CMP-N-acetylneuraminic acid synthetase (neuA) 343630 9787076 HPSJM_01750 Helicobacter pylori SJM180 CMP-N-acetylneuraminic acid synthetase (neuA) YP_003928263.1 342758 D 765962 CDS YP_003928264.1 308184131 9787077 343627..344169 1 NC_014560.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; flagellar biosynthesis protein G 344169 9787077 HPSJM_01755 Helicobacter pylori SJM180 flagellar biosynthesis protein G YP_003928264.1 343627 D 765962 CDS YP_003928265.1 308184132 9787078 complement(344102..345040) 1 NC_014560.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 345040 lpxK 9787078 lpxK Helicobacter pylori SJM180 tetraacyldisaccharide 4'-kinase YP_003928265.1 344102 R 765962 CDS YP_003928266.1 308184133 9787079 complement(345037..345819) 1 NC_014560.1 COG0171 NAD synthase; NAD synthetase 345819 9787079 HPSJM_01765 Helicobacter pylori SJM180 NAD synthetase YP_003928266.1 345037 R 765962 CDS YP_003928267.1 308184134 9787081 346068..347060 1 NC_014560.1 COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 347060 9787081 HPSJM_01770 Helicobacter pylori SJM180 ketol-acid reductoisomerase YP_003928267.1 346068 D 765962 CDS YP_003928268.1 308184135 9787082 347084..347890 1 NC_014560.1 COG2894 Septum formation inhibitor-activating ATPase; MinD cell division inhibitor protein 347890 9787082 HPSJM_01775 Helicobacter pylori SJM180 MinD cell division inhibitor protein YP_003928268.1 347084 D 765962 CDS YP_003928269.1 308184136 9787083 347887..348120 1 NC_014560.1 COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 348120 minE 9787083 minE Helicobacter pylori SJM180 cell division topological specificity factor MinE YP_003928269.1 347887 D 765962 CDS YP_003928270.1 308184137 9787084 348132..348932 1 NC_014560.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; hypothetical protein 348932 9787084 HPSJM_01785 Helicobacter pylori SJM180 hypothetical protein YP_003928270.1 348132 D 765962 CDS YP_003928271.1 308184138 9787085 348929..349333 1 NC_014560.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 349333 9787085 HPSJM_01790 Helicobacter pylori SJM180 Holliday junction resolvase-like protein YP_003928271.1 348929 D 765962 CDS YP_003928272.1 308184139 9787086 349618..349824 1 NC_014560.1 Cysteine-rich protein H 349824 9787086 HPSJM_01795 Helicobacter pylori SJM180 Cysteine-rich protein H YP_003928272.1 349618 D 765962 CDS YP_003928273.1 308184140 9787087 349854..350162 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 350162 9787087 HPSJM_01800 Helicobacter pylori SJM180 hypothetical protein YP_003928273.1 349854 D 765962 CDS YP_003928274.1 308184141 9787088 350224..350361 1 NC_014560.1 hypothetical protein 350361 9787088 HPSJM_01805 Helicobacter pylori SJM180 hypothetical protein YP_003928274.1 350224 D 765962 CDS YP_003928275.1 308184142 9787089 350488..350826 1 NC_014560.1 hypothetical protein 350826 9787089 HPSJM_01810 Helicobacter pylori SJM180 hypothetical protein YP_003928275.1 350488 D 765962 CDS YP_003928276.1 308184143 9787090 350810..351370 1 NC_014560.1 hypothetical protein 351370 9787090 HPSJM_01815 Helicobacter pylori SJM180 hypothetical protein YP_003928276.1 350810 D 765962 CDS YP_003928277.1 308184144 9787091 complement(351658..352539) 1 NC_014560.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 352539 9787091 HPSJM_01820 Helicobacter pylori SJM180 hypothetical protein YP_003928277.1 351658 R 765962 CDS YP_003928278.1 308184145 9787092 complement(352539..354089) 1 NC_014560.1 COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA specific exonuclease 354089 9787092 HPSJM_01825 Helicobacter pylori SJM180 single-stranded-DNA specific exonuclease YP_003928278.1 352539 R 765962 CDS YP_003928279.1 308184146 9787093 complement(354098..355714) 1 NC_014560.1 COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase 355714 pyrG 9787093 pyrG Helicobacter pylori SJM180 CTP synthetase YP_003928279.1 354098 R 765962 CDS YP_003928280.1 308184147 9787094 355972..356634 1 NC_014560.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 356634 9787094 HPSJM_01835 Helicobacter pylori SJM180 hypothetical protein YP_003928280.1 355972 D 765962 CDS YP_003928281.1 308184148 9787095 356678..358381 1 NC_014560.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 358381 fliF 9787095 fliF Helicobacter pylori SJM180 flagellar MS-ring protein YP_003928281.1 356678 D 765962 CDS YP_003928282.1 308184149 9787096 358394..359425 1 NC_014560.1 COG1536 Flagellar motor switch protein; flagellar motor switch protein G 359425 fliG 9787096 fliG Helicobacter pylori SJM180 flagellar motor switch protein G YP_003928282.1 358394 D 765962 CDS YP_003928283.1 308184150 9787097 359418..360191 1 NC_014560.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 360191 fliH 9787097 fliH Helicobacter pylori SJM180 flagellar assembly protein H YP_003928283.1 359418 D 765962 CDS YP_003928284.1 308184151 9787098 360194..362044 1 NC_014560.1 COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 362044 9787098 HPSJM_01855 Helicobacter pylori SJM180 1-deoxy-D-xylulose-5-phosphate synthase YP_003928284.1 360194 D 765962 CDS YP_003928285.1 308184152 9787099 362041..363855 1 NC_014560.1 COG0481 Membrane GTPase LepA; GTP-binding protein LepA 363855 9787099 HPSJM_01860 Helicobacter pylori SJM180 GTP-binding protein LepA YP_003928285.1 362041 D 765962 CDS YP_003928286.1 308184153 9787100 363870..364625 1 NC_014560.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; hypothetical protein 364625 9787100 HPSJM_01865 Helicobacter pylori SJM180 hypothetical protein YP_003928286.1 363870 D 765962 CDS YP_003928287.1 308184154 9787101 364628..364864 1 NC_014560.1 hypothetical protein 364864 9787101 HPSJM_01870 Helicobacter pylori SJM180 hypothetical protein YP_003928287.1 364628 D 765962 CDS YP_003928288.1 308184155 9787102 365061..365279 1 NC_014560.1 hypothetical protein 365279 9787102 HPSJM_01875 Helicobacter pylori SJM180 hypothetical protein YP_003928288.1 365061 D 765962 CDS YP_003928289.1 308184156 9787103 complement(365497..366306) 1 NC_014560.1 COG4786 Flagellar basal body rod protein; flagellar basal-body rod protein 366306 9787103 HPSJM_01880 Helicobacter pylori SJM180 flagellar basal-body rod protein YP_003928289.1 365497 R 765962 CDS YP_003928290.1 308184157 9787104 complement(366361..367647) 1 NC_014560.1 COG0477 Permeases of the major facilitator superfamily; General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein 367647 9787104 HPSJM_01885 Helicobacter pylori SJM180 General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein YP_003928290.1 366361 R 765962 CDS YP_003928291.1 308184158 9787105 367750..367902 1 NC_014560.1 hypothetical protein 367902 9787105 HPSJM_01890 Helicobacter pylori SJM180 hypothetical protein YP_003928291.1 367750 D 765962 CDS YP_003928292.1 308184159 9787106 complement(367912..370461) 1 NC_014560.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein 370461 9787106 HPSJM_01895 Helicobacter pylori SJM180 cell division protein YP_003928292.1 367912 R 765962 CDS YP_003928293.1 308184160 9787107 complement(370458..372794) 1 NC_014560.1 COG3893 Inactivated superfamily I helicase; hypothetical protein 372794 9787107 HPSJM_01900 Helicobacter pylori SJM180 hypothetical protein YP_003928293.1 370458 R 765962 CDS YP_003928294.1 308184161 9787108 complement(372791..374716) 1 NC_014560.1 COG0021 Transketolase; transketolase 374716 9787108 HPSJM_01905 Helicobacter pylori SJM180 transketolase YP_003928294.1 372791 R 765962 CDS YP_003928295.1 308184162 9787109 complement(374763..375605) 1 NC_014560.1 COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 375605 9787109 HPSJM_01910 Helicobacter pylori SJM180 bifunctional riboflavin kinase/FMN adenylyltransferase YP_003928295.1 374763 R 765962 CDS YP_003928296.1 308184163 9787110 complement(375571..376278) 1 NC_014560.1 COG1189 Predicted rRNA methylase; Pore-forming cytolysin 376278 9787110 HPSJM_01915 Helicobacter pylori SJM180 Pore-forming cytolysin YP_003928296.1 375571 R 765962 CDS YP_003928297.1 308184164 9787111 complement(376278..376793) 1 NC_014560.1 hypothetical protein 376793 9787111 HPSJM_01920 Helicobacter pylori SJM180 hypothetical protein YP_003928297.1 376278 R 765962 CDS YP_003928298.1 308184165 9787112 376860..377783 1 NC_014560.1 COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 377783 pyrB 9787112 pyrB Helicobacter pylori SJM180 aspartate carbamoyltransferase catalytic subunit YP_003928298.1 376860 D 765962 CDS YP_003928299.1 308184166 9787113 378080..379519 1 NC_014560.1 outer membrane protein HofB 379519 9787113 HPSJM_01930 Helicobacter pylori SJM180 outer membrane protein HofB YP_003928299.1 378080 D 765962 CDS YP_003928300.1 308184167 9787114 379610..381265 1 NC_014560.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (msbA) 381265 9787114 HPSJM_01935 Helicobacter pylori SJM180 multidrug resistance protein (msbA) YP_003928300.1 379610 D 765962 CDS YP_003928301.1 308184168 9787115 381259..381882 1 NC_014560.1 hypothetical protein 381882 9787115 HPSJM_01940 Helicobacter pylori SJM180 hypothetical protein YP_003928301.1 381259 D 765962 CDS YP_003928302.1 308184169 9787116 381886..382455 1 NC_014560.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; archaeal Holliday junction resolvase / Mrr protein-like protein 382455 9787116 HPSJM_01945 Helicobacter pylori SJM180 archaeal Holliday junction resolvase / Mrr protein-like protein YP_003928302.1 381886 D 765962 CDS YP_003928303.1 308184170 9787117 382588..383700 1 NC_014560.1 COG1106 Predicted ATPases; hypothetical protein 383700 9787117 HPSJM_01950 Helicobacter pylori SJM180 hypothetical protein YP_003928303.1 382588 D 765962 CDS YP_003928304.1 308184171 9787118 383729..384412 1 NC_014560.1 hypothetical protein 384412 9787118 HPSJM_01955 Helicobacter pylori SJM180 hypothetical protein YP_003928304.1 383729 D 765962 CDS YP_003928305.1 308184172 9787119 384468..385463 1 NC_014560.1 COG3376 High-affinity nickel permease; high affinity nickel transport protein 385463 9787119 HPSJM_01960 Helicobacter pylori SJM180 high affinity nickel transport protein YP_003928305.1 384468 D 765962 CDS YP_003928306.1 308184173 9787120 complement(385467..385982) 1 NC_014560.1 hypothetical protein 385982 9787120 HPSJM_01965 Helicobacter pylori SJM180 hypothetical protein YP_003928306.1 385467 R 765962 CDS YP_003928307.1 308184174 9787121 386115..387431 1 NC_014560.1 hypothetical protein 387431 9787121 HPSJM_01970 Helicobacter pylori SJM180 hypothetical protein YP_003928307.1 386115 D 765962 CDS YP_003928308.1 308184175 9787122 387648..387881 1 NC_014560.1 hypothetical protein 387881 9787122 HPSJM_01975 Helicobacter pylori SJM180 hypothetical protein YP_003928308.1 387648 D 765962 CDS YP_003928309.1 308184176 9787123 complement(388081..388281) 1 NC_014560.1 COG2608 Copper chaperone; copper ion binding protein 388281 9787123 HPSJM_01980 Helicobacter pylori SJM180 copper ion binding protein YP_003928309.1 388081 R 765962 CDS YP_003928310.1 308184177 9787124 complement(388282..390519) 1 NC_014560.1 COG2217 Cation transport ATPase; copper-transporting ATPase 390519 9787124 HPSJM_01985 Helicobacter pylori SJM180 copper-transporting ATPase YP_003928310.1 388282 R 765962 CDS YP_003928311.1 308184178 9787125 complement(390516..391229) 1 NC_014560.1 COG1183 Phosphatidylserine synthase; phosphatidylserine synthase 391229 9787125 HPSJM_01990 Helicobacter pylori SJM180 phosphatidylserine synthase YP_003928311.1 390516 R 765962 CDS YP_003928312.1 308184179 9787126 complement(391219..391473) 1 NC_014560.1 hypothetical protein 391473 9787126 HPSJM_01995 Helicobacter pylori SJM180 hypothetical protein YP_003928312.1 391219 R 765962 CDS YP_003928313.1 308184180 9787127 complement(391476..393374) 1 NC_014560.1 COG0465 ATP-dependent Zn proteases; cell division protein (ftsH) 393374 9787127 HPSJM_02000 Helicobacter pylori SJM180 cell division protein (ftsH) YP_003928313.1 391476 R 765962 CDS YP_003928314.1 308184181 9787128 complement(393383..394372) 1 NC_014560.1 COG2264 Ribosomal protein L11 methylase; ribosomal protein L11 methyltransferase 394372 prmA 9787128 prmA Helicobacter pylori SJM180 ribosomal protein L11 methyltransferase YP_003928314.1 393383 R 765962 CDS YP_003928315.1 308184182 9787129 complement(394373..394747) 1 NC_014560.1 COG0784 FOG: CheY-like receiver; Chemotactic response regulator, two-component system 394747 9787129 HPSJM_02010 Helicobacter pylori SJM180 Chemotactic response regulator, two-component system YP_003928315.1 394373 R 765962 CDS YP_003928316.1 308184183 9787130 395037..395639 1 NC_014560.1 Outer membrane protein HorD 395639 9787130 HPSJM_02015 Helicobacter pylori SJM180 Outer membrane protein HorD YP_003928316.1 395037 D 765962 CDS YP_003928317.1 308184184 9787132 complement(395772..396179) 1 NC_014560.1 hypothetical protein 396179 9787132 HPSJM_02020 Helicobacter pylori SJM180 hypothetical protein YP_003928317.1 395772 R 765962 CDS YP_003928318.1 308184185 9787133 complement(396182..396424) 1 NC_014560.1 hypothetical protein 396424 9787133 HPSJM_02025 Helicobacter pylori SJM180 hypothetical protein YP_003928318.1 396182 R 765962 CDS YP_003928319.1 308184186 9787134 complement(396418..396954) 1 NC_014560.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB 396954 gidB 9787134 gidB Helicobacter pylori SJM180 16S rRNA methyltransferase GidB YP_003928319.1 396418 R 765962 CDS YP_003928320.1 308184187 9787135 complement(396951..397988) 1 NC_014560.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine:tRNA ribosyltransferase-isomerase 397988 queA 9787135 queA Helicobacter pylori SJM180 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003928320.1 396951 R 765962 CDS YP_003928321.1 308184188 9787136 complement(397989..398711) 1 NC_014560.1 COG0805 Sec-independent protein secretion pathway component TatC; twin arginine-targeting protein translocase TatC 398711 9787136 HPSJM_02040 Helicobacter pylori SJM180 twin arginine-targeting protein translocase TatC YP_003928321.1 397989 R 765962 CDS YP_003928322.1 308184189 9787137 complement(398704..399186) 1 NC_014560.1 COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 399186 9787137 HPSJM_02045 Helicobacter pylori SJM180 sec-independent translocase YP_003928322.1 398704 R 765962 CDS YP_003928323.1 308184190 9787138 complement(399253..400263) 1 NC_014560.1 COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB 400263 ruvB 9787138 ruvB Helicobacter pylori SJM180 Holliday junction DNA helicase RuvB YP_003928323.1 399253 R 765962 CDS YP_003928324.1 308184191 9787139 complement(400264..401076) 1 NC_014560.1 COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 401076 panB 9787139 panB Helicobacter pylori SJM180 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003928324.1 400264 R 765962 CDS YP_003928325.1 308184192 9787140 401224..401946 1 NC_014560.1 hypothetical protein 401946 9787140 HPSJM_02060 Helicobacter pylori SJM180 hypothetical protein YP_003928325.1 401224 D 765962 CDS YP_003928326.1 308184193 9787141 401936..402793 1 NC_014560.1 hypothetical protein 402793 9787141 HPSJM_02065 Helicobacter pylori SJM180 hypothetical protein YP_003928326.1 401936 D 765962 CDS YP_003928327.1 308184194 9787142 402805..403746 1 NC_014560.1 hypothetical protein 403746 9787142 HPSJM_02070 Helicobacter pylori SJM180 hypothetical protein YP_003928327.1 402805 D 765962 CDS YP_003928328.1 308184195 9787143 403756..405078 1 NC_014560.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 405078 9787143 HPSJM_02075 Helicobacter pylori SJM180 hypothetical protein YP_003928328.1 403756 D 765962 CDS YP_003928329.1 308184196 9787144 405081..405668 1 NC_014560.1 COG0850 Septum formation inhibitor; septum formation inhibitor 405668 minC 9787144 minC Helicobacter pylori SJM180 septum formation inhibitor YP_003928329.1 405081 D 765962 CDS YP_003928330.1 308184197 9787145 405665..406552 1 NC_014560.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 406552 lpxC 9787145 lpxC Helicobacter pylori SJM180 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_003928330.1 405665 D 765962 CDS YP_003928331.1 308184198 9787146 406574..407047 1 NC_014560.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 407047 9787146 HPSJM_02090 Helicobacter pylori SJM180 hypothetical protein YP_003928331.1 406574 D 765962 CDS YP_003928332.1 308184199 9787147 407101..407982 1 NC_014560.1 COG0083 Homoserine kinase; homoserine kinase 407982 9787147 HPSJM_02095 Helicobacter pylori SJM180 homoserine kinase YP_003928332.1 407101 D 765962 CDS YP_003928333.1 308184200 9787148 407969..408223 1 NC_014560.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 408223 9787148 HPSJM_02100 Helicobacter pylori SJM180 hypothetical protein YP_003928333.1 407969 D 765962 CDS YP_003928334.1 308184201 9787149 408220..411063 1 NC_014560.1 COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 411063 infB 9787149 infB Helicobacter pylori SJM180 translation initiation factor IF-2 YP_003928334.1 408220 D 765962 CDS YP_003928335.1 308184202 9787150 411063..411398 1 NC_014560.1 COG0858 Ribosome-binding factor A; ribosome-binding factor A 411398 rbfA 9787150 rbfA Helicobacter pylori SJM180 ribosome-binding factor A YP_003928335.1 411063 D 765962 CDS YP_003928336.1 308184203 9787151 411391..411831 1 NC_014560.1 COG0779 Uncharacterized protein conserved in bacteria; Ribosome maturation factor rimP 411831 9787151 HPSJM_02115 Helicobacter pylori SJM180 Ribosome maturation factor rimP YP_003928336.1 411391 D 765962 CDS YP_003928337.1 308184204 9787152 complement(411939..413927) 1 NC_014560.1 COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase 413927 9787152 HPSJM_02120 Helicobacter pylori SJM180 acetyl-CoA synthetase YP_003928337.1 411939 R 765962 CDS YP_003928338.1 308184205 9787153 414124..415236 1 NC_014560.1 COG1408 Predicted phosphohydrolases; phosphodiesterase domain-containing protein 415236 9787153 HPSJM_02125 Helicobacter pylori SJM180 phosphodiesterase domain-containing protein YP_003928338.1 414124 D 765962 CDS YP_003928339.1 308184206 9787154 415584..416255 1 NC_014560.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator 416255 9787154 HPSJM_02130 Helicobacter pylori SJM180 transcriptional regulator YP_003928339.1 415584 D 765962 CDS YP_003928340.1 308184207 9787155 complement(416435..416698) 1 NC_014560.1 hypothetical protein 416698 9787155 HPSJM_02135 Helicobacter pylori SJM180 hypothetical protein YP_003928340.1 416435 R 765962 CDS YP_003928341.1 308184208 9787156 complement(416692..416847) 1 NC_014560.1 hypothetical protein 416847 9787156 HPSJM_02140 Helicobacter pylori SJM180 hypothetical protein YP_003928341.1 416692 R 765962 CDS YP_003928342.1 308184209 9787157 complement(417030..418073) 1 NC_014560.1 COG2404 Predicted phosphohydrolase (DHH superfamily); hypothetical protein 418073 9787157 HPSJM_02145 Helicobacter pylori SJM180 hypothetical protein YP_003928342.1 417030 R 765962 CDS YP_003928343.1 308184210 9787158 complement(418103..420304) 1 NC_014560.1 COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA 420304 flhA 9787158 flhA Helicobacter pylori SJM180 flagellar biosynthesis protein FlhA YP_003928343.1 418103 R 765962 CDS YP_003928344.1 308184211 9787159 420440..420712 1 NC_014560.1 COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 420712 rpsO 9787159 rpsO Helicobacter pylori SJM180 30S ribosomal protein S15 YP_003928344.1 420440 D 765962 CDS YP_003928345.1 308184212 9787160 420742..422031 1 NC_014560.1 COG3307 Lipid A core - O-antigen ligase and related enzymes; hypothetical protein 422031 9787160 HPSJM_02160 Helicobacter pylori SJM180 hypothetical protein YP_003928345.1 420742 D 765962 CDS YP_003928346.1 308184213 9787161 422162..422674 1 NC_014560.1 COG0757 3-dehydroquinate dehydratase II; 3-dehydroquinate dehydratase 422674 9787161 HPSJM_02165 Helicobacter pylori SJM180 3-dehydroquinate dehydratase YP_003928346.1 422162 D 765962 CDS YP_003928347.1 308184214 9787162 422687..423760 1 NC_014560.1 COG0006 Xaa-Pro aminopeptidase; X-Pro aminopeptidase 423760 9787162 HPSJM_02170 Helicobacter pylori SJM180 X-Pro aminopeptidase YP_003928347.1 422687 D 765962 CDS YP_003928348.1 308184215 9787163 423757..424248 1 NC_014560.1 COG0801 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 424248 9787163 HPSJM_02175 Helicobacter pylori SJM180 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003928348.1 423757 D 765962 CDS YP_003928349.1 308184216 9787164 424245..425621 1 NC_014560.1 COG1419 Flagellar GTP-binding protein; flagellar biosynthesis regulator FlhF 425621 flhF 9787164 flhF Helicobacter pylori SJM180 flagellar biosynthesis regulator FlhF YP_003928349.1 424245 D 765962 CDS YP_003928350.1 308184217 9787165 425618..426502 1 NC_014560.1 COG0455 ATPases involved in chromosome partitioning; putative ATPAse involved in the assembly of flagella 426502 9787165 HPSJM_02185 Helicobacter pylori SJM180 putative ATPAse involved in the assembly of flagella YP_003928350.1 425618 D 765962 CDS YP_003928351.1 308184218 9787166 complement(426515..426679) 1 NC_014560.1 hypothetical protein 426679 9787166 HPSJM_02190 Helicobacter pylori SJM180 hypothetical protein YP_003928351.1 426515 R 765962 CDS YP_003928352.1 308184219 9787167 426799..427566 1 NC_014560.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 427566 fliA 9787167 fliA Helicobacter pylori SJM180 flagellar biosynthesis sigma factor YP_003928352.1 426799 D 765962 CDS YP_003928353.1 308184220 9787168 427559..428623 1 NC_014560.1 COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 428623 fliM 9787168 fliM Helicobacter pylori SJM180 flagellar motor switch protein FliM YP_003928353.1 427559 D 765962 CDS YP_003928354.1 308184221 9787169 428627..429490 1 NC_014560.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; flagellar motor switch protein FliY 429490 9787169 HPSJM_02205 Helicobacter pylori SJM180 flagellar motor switch protein FliY YP_003928354.1 428627 D 765962 CDS YP_003928355.1 308184222 9787170 429519..430055 1 NC_014560.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 430055 9787170 HPSJM_02210 Helicobacter pylori SJM180 hypothetical protein YP_003928355.1 429519 D 765962 CDS YP_003928356.1 308184223 9787171 430052..430549 1 NC_014560.1 COG4731 Uncharacterized protein conserved in bacteria; hypothetical protein 430549 9787171 HPSJM_02215 Helicobacter pylori SJM180 hypothetical protein YP_003928356.1 430052 D 765962 CDS YP_003928357.1 308184224 9787172 complement(430572..431024) 1 NC_014560.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein 431024 9787172 HPSJM_02220 Helicobacter pylori SJM180 ferric uptake regulation protein YP_003928357.1 430572 R 765962 CDS YP_003928358.1 308184225 9787173 complement(431184..432359) 1 NC_014560.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 432359 9787173 HPSJM_02225 Helicobacter pylori SJM180 recombination factor protein RarA YP_003928358.1 431184 R 765962 CDS YP_003928359.1 308184226 9787174 complement(432356..432727) 1 NC_014560.1 COG0789 Predicted transcriptional regulators; putative transcriptional regulator, MerR family protein 432727 9787174 HPSJM_02230 Helicobacter pylori SJM180 putative transcriptional regulator, MerR family protein YP_003928359.1 432356 R 765962 CDS YP_003928360.1 308184227 9787175 complement(432737..433603) 1 NC_014560.1 COG2214 DnaJ-class molecular chaperone; putative co-chaperone with DnaK 433603 9787175 HPSJM_02235 Helicobacter pylori SJM180 putative co-chaperone with DnaK YP_003928360.1 432737 R 765962 CDS YP_003928361.1 308184228 9787176 433771..435021 1 NC_014560.1 hypothetical protein 435021 9787176 HPSJM_02240 Helicobacter pylori SJM180 hypothetical protein YP_003928361.1 433771 D 765962 CDS YP_003928362.1 308184229 9787177 complement(435146..435964) 1 NC_014560.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); hypothetical protein 435964 9787177 HPSJM_02245 Helicobacter pylori SJM180 hypothetical protein YP_003928362.1 435146 R 765962 CDS YP_003928363.1 308184230 9787178 complement(436216..437112) 1 NC_014560.1 COG0784 FOG: CheY-like receiver; two component response regulator 437112 9787178 HPSJM_02250 Helicobacter pylori SJM180 two component response regulator YP_003928363.1 436216 R 765962 CDS YP_003928364.1 308184231 9787179 complement(437134..438354) 1 NC_014560.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase protein 438354 ispDF 9787179 ispDF Helicobacter pylori SJM180 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase protein YP_003928364.1 437134 R 765962 CDS YP_003928365.1 308184232 9787180 complement(438376..439806) 1 NC_014560.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; protease DO 439806 9787180 HPSJM_02260 Helicobacter pylori SJM180 protease DO YP_003928365.1 438376 R 765962 CDS YP_003928366.1 308184233 9787181 complement(439851..441293) 1 NC_014560.1 COG0833 Amino acid transporters; amino acid permease 441293 9787181 HPSJM_02265 Helicobacter pylori SJM180 amino acid permease YP_003928366.1 439851 R 765962 CDS YP_003928367.1 308184234 9787182 complement(441548..442087) 1 NC_014560.1 COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthase 442087 9787182 HPSJM_02270 Helicobacter pylori SJM180 phosphatidylglycerophosphate synthase YP_003928367.1 441548 R 765962 CDS YP_003928368.1 308184235 9787183 complement(442084..442692) 1 NC_014560.1 hypothetical protein 442692 9787183 HPSJM_02275 Helicobacter pylori SJM180 hypothetical protein YP_003928368.1 442084 R 765962 CDS YP_003928369.1 308184236 9787184 complement(442702..443490) 1 NC_014560.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase 443490 9787184 HPSJM_02280 Helicobacter pylori SJM180 7-alpha-hydroxysteroid dehydrogenase YP_003928369.1 442702 R 765962 CDS YP_003928370.1 308184237 9787185 complement(443487..444389) 1 NC_014560.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 444389 9787185 HPSJM_02285 Helicobacter pylori SJM180 dihydrodipicolinate synthase YP_003928370.1 443487 R 765962 CDS YP_003928371.1 308184238 9787186 complement(444404..445738) 1 NC_014560.1 COG0612 Predicted Zn-dependent peptidases; putative zinc protease 445738 9787186 HPSJM_02290 Helicobacter pylori SJM180 putative zinc protease YP_003928371.1 444404 R 765962 CDS YP_003928372.1 308184239 9787187 complement(445735..446790) 1 NC_014560.1 COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 446790 9787187 HPSJM_02295 Helicobacter pylori SJM180 dihydroorotate dehydrogenase 2 YP_003928372.1 445735 R 765962 CDS YP_003928373.1 308184240 9787188 complement(446828..448855) 1 NC_014560.1 COG0855 Polyphosphate kinase; polyphosphate kinase 448855 9787188 HPSJM_02300 Helicobacter pylori SJM180 polyphosphate kinase YP_003928373.1 446828 R 765962 CDS YP_003928374.1 308184241 9787190 complement(449007..449117) 1 NC_014560.1 hypothetical protein 449117 9787190 HPSJM_02305 Helicobacter pylori SJM180 hypothetical protein YP_003928374.1 449007 R 765962 CDS YP_003928375.1 308184242 9787191 complement(449523..450764) 1 NC_014560.1 COG0732 Restriction endonuclease S subunits; Type I restriction/modification specificity protein 450764 9787191 HPSJM_02310 Helicobacter pylori SJM180 Type I restriction/modification specificity protein YP_003928375.1 449523 R 765962 CDS YP_003928376.1 308184243 9787192 complement(450757..452388) 1 NC_014560.1 COG0286 Type I restriction-modification system methyltransferase subunit; type I restriction enzyme M protein 452388 9787192 HPSJM_02315 Helicobacter pylori SJM180 type I restriction enzyme M protein YP_003928376.1 450757 R 765962 CDS YP_003928377.1 308184244 9787193 complement(452381..454663) 1 NC_014560.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein 454663 9787193 HPSJM_02320 Helicobacter pylori SJM180 type I restriction enzyme R protein YP_003928377.1 452381 R 765962 CDS YP_003928378.1 308184245 9787194 complement(454890..455510) 1 NC_014560.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) 455510 9787194 HPSJM_02325 Helicobacter pylori SJM180 type I restriction enzyme R protein (hsdR) YP_003928378.1 454890 R 765962 CDS YP_003928379.1 308184246 9787195 complement(455558..457453) 1 NC_014560.1 COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein 457453 9787195 HPSJM_02330 Helicobacter pylori SJM180 hypothetical protein YP_003928379.1 455558 R 765962 CDS YP_003928380.1 308184247 9787196 complement(457478..458245) 1 NC_014560.1 hypothetical protein 458245 9787196 HPSJM_02335 Helicobacter pylori SJM180 hypothetical protein YP_003928380.1 457478 R 765962 CDS YP_003928381.1 308184248 9787197 complement(458255..458605) 1 NC_014560.1 hypothetical protein 458605 9787197 HPSJM_02340 Helicobacter pylori SJM180 hypothetical protein YP_003928381.1 458255 R 765962 CDS YP_003928382.1 308184249 9787198 complement(458571..460058) 1 NC_014560.1 COG2048 Heterodisulfide reductase, subunit B; hypothetical protein 460058 9787198 HPSJM_02345 Helicobacter pylori SJM180 hypothetical protein YP_003928382.1 458571 R 765962 CDS YP_003928383.1 308184250 9787199 complement(460070..460558) 1 NC_014560.1 hypothetical protein 460558 9787199 HPSJM_02350 Helicobacter pylori SJM180 hypothetical protein YP_003928383.1 460070 R 765962 CDS YP_003928384.1 308184251 9787200 complement(460543..462279) 1 NC_014560.1 COG1164 Oligoendopeptidase F; oligoendopeptidase F 462279 9787200 HPSJM_02355 Helicobacter pylori SJM180 oligoendopeptidase F YP_003928384.1 460543 R 765962 CDS YP_003928385.1 308184252 9787201 complement(462377..463627) 1 NC_014560.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein 463627 9787201 HPSJM_02360 Helicobacter pylori SJM180 glutathione-regulated potassium-efflux system protein YP_003928385.1 462377 R 765962 CDS YP_003928386.1 308184253 9787202 complement(463955..464515) 1 NC_014560.1 outer membrane protein (omp11) 464515 9787202 HPSJM_02365 Helicobacter pylori SJM180 outer membrane protein (omp11) YP_003928386.1 463955 R 765962 CDS YP_003928387.1 308184254 9787203 464738..465478 1 NC_014560.1 COG0725 ABC-type molybdate transport system, periplasmic component; molybdenum ABC transporter ModA 465478 9787203 HPSJM_02370 Helicobacter pylori SJM180 molybdenum ABC transporter ModA YP_003928387.1 464738 D 765962 CDS YP_003928388.1 308184255 9787204 465500..466174 1 NC_014560.1 COG4149 ABC-type molybdate transport system, permease component; molybdenum ABC transporter ModB 466174 9787204 HPSJM_02375 Helicobacter pylori SJM180 molybdenum ABC transporter ModB YP_003928388.1 465500 D 765962 CDS YP_003928389.1 308184256 9787205 466171..466968 1 NC_014560.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; molybdenum ABC transporter ModD 466968 9787205 HPSJM_02380 Helicobacter pylori SJM180 molybdenum ABC transporter ModD YP_003928389.1 466171 D 765962 CDS YP_003928390.1 308184257 9787206 complement(467131..468522) 1 NC_014560.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase 468522 gltX 9787206 gltX Helicobacter pylori SJM180 glutamyl-tRNA synthetase YP_003928390.1 467131 R 765962 CDS YP_003928391.1 308184258 9787207 468640..469749 1 NC_014560.1 outer membrane protein HopK 469749 9787207 HPSJM_02390 Helicobacter pylori SJM180 outer membrane protein HopK YP_003928391.1 468640 D 765962 CDS YP_003928392.1 308184259 9787208 469758..471395 1 NC_014560.1 COG0286 Type I restriction-modification system methyltransferase subunit; type II adenine specific methyltransferase 471395 9787208 HPSJM_02395 Helicobacter pylori SJM180 type II adenine specific methyltransferase YP_003928392.1 469758 D 765962 CDS YP_003928393.1 308184260 9787209 471361..472209 1 NC_014560.1 COG0859 ADP-heptose:LPS heptosyltransferase; putative non-functional type II restriction endonuclease 472209 9787209 HPSJM_02400 Helicobacter pylori SJM180 putative non-functional type II restriction endonuclease YP_003928393.1 471361 D 765962 CDS YP_003928394.1 308184261 9787210 472255..474054 1 NC_014560.1 COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 474054 9787210 HPSJM_02405 Helicobacter pylori SJM180 hypothetical protein YP_003928394.1 472255 D 765962 CDS YP_003928395.1 308184262 9787211 474070..474999 1 NC_014560.1 COG0338 Site-specific DNA methylase; type II adenine specific DNA methyltransferase 474999 9787211 HPSJM_02410 Helicobacter pylori SJM180 type II adenine specific DNA methyltransferase YP_003928395.1 474070 D 765962 CDS YP_003928396.1 308184263 9787212 475002..475616 1 NC_014560.1 type II restriction endonuclease 475616 9787212 HPSJM_02415 Helicobacter pylori SJM180 type II restriction endonuclease YP_003928396.1 475002 D 765962 CDS YP_003928397.1 308184264 9787213 475714..476280 1 NC_014560.1 COG0270 Site-specific DNA methylase; type II DNA modification enzyme 476280 9787213 HPSJM_02420 Helicobacter pylori SJM180 type II DNA modification enzyme YP_003928397.1 475714 D 765962 CDS YP_003928398.1 308184265 9787214 complement(476296..477240) 1 NC_014560.1 COG0753 Catalase; catalase-like protein 477240 9787214 HPSJM_02425 Helicobacter pylori SJM180 catalase-like protein YP_003928398.1 476296 R 765962 CDS YP_003928399.1 308184266 9787215 477530..479116 1 NC_014560.1 outer membrane protein HofC 479116 9787215 HPSJM_02430 Helicobacter pylori SJM180 outer membrane protein HofC YP_003928399.1 477530 D 765962 CDS YP_003928400.1 308184267 9787216 479186..480583 1 NC_014560.1 outer membrane protein HofD 480583 9787216 HPSJM_02435 Helicobacter pylori SJM180 outer membrane protein HofD YP_003928400.1 479186 D 765962 CDS YP_003928401.1 308184268 9787217 480854..483190 1 NC_014560.1 hypothetical protein 483190 9787217 HPSJM_02440 Helicobacter pylori SJM180 hypothetical protein YP_003928401.1 480854 D 765962 CDS YP_003928402.1 308184269 9787218 483233..483472 1 NC_014560.1 hypothetical protein 483472 9787218 HPSJM_02445 Helicobacter pylori SJM180 hypothetical protein YP_003928402.1 483233 D 765962 CDS YP_003928403.1 308184270 9787219 483562..484683 1 NC_014560.1 hypothetical protein 484683 9787219 HPSJM_02450 Helicobacter pylori SJM180 hypothetical protein YP_003928403.1 483562 D 765962 CDS YP_003928404.1 308184271 9787220 complement(484898..486034) 1 NC_014560.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component; putative potassium channel protein 486034 9787220 HPSJM_02455 Helicobacter pylori SJM180 putative potassium channel protein YP_003928404.1 484898 R 765962 CDS YP_003928405.1 308184272 9787221 complement(486221..486409) 1 NC_014560.1 COG0227 Ribosomal protein L28; 50S ribosomal protein L28 486409 rpmB 9787221 rpmB Helicobacter pylori SJM180 50S ribosomal protein L28 YP_003928405.1 486221 R 765962 CDS YP_003928406.1 308184273 9787222 complement(486509..487360) 1 NC_014560.1 hypothetical protein 487360 9787222 HPSJM_02465 Helicobacter pylori SJM180 hypothetical protein YP_003928406.1 486509 R 765962 CDS YP_003928407.1 308184274 9787223 487493..488554 1 NC_014560.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 488554 mraY 9787223 mraY Helicobacter pylori SJM180 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003928407.1 487493 D 765962 CDS YP_003928408.1 308184275 9787224 488556..489824 1 NC_014560.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 489824 murD 9787224 murD Helicobacter pylori SJM180 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_003928408.1 488556 D 765962 CDS YP_003928409.1 308184276 9787225 complement(489833..490093) 1 NC_014560.1 hypothetical protein 490093 9787225 HPSJM_02480 Helicobacter pylori SJM180 hypothetical protein YP_003928409.1 489833 R 765962 CDS YP_003928410.1 308184277 9787226 complement(490083..490484) 1 NC_014560.1 COG0824 Predicted thioesterase; thioesterase family protein 490484 9787226 HPSJM_02485 Helicobacter pylori SJM180 thioesterase family protein YP_003928410.1 490083 R 765962 CDS YP_003928411.1 308184278 9787227 490717..492045 1 NC_014560.1 COG0733 Na+-dependent transporters of the SNF family; sodium- and chloride-dependent transporter 492045 9787227 HPSJM_02490 Helicobacter pylori SJM180 sodium- and chloride-dependent transporter YP_003928411.1 490717 D 765962 CDS YP_003928412.1 308184279 9787228 492056..493384 1 NC_014560.1 COG0733 Na+-dependent transporters of the SNF family; sodium-and chloride-dependent transporter 493384 9787228 HPSJM_02495 Helicobacter pylori SJM180 sodium-and chloride-dependent transporter YP_003928412.1 492056 D 765962 CDS YP_003928413.1 308184280 9787229 493399..494466 1 NC_014560.1 COG2829 Outer membrane phospholipase A; phospholipase A1 494466 9787229 HPSJM_02500 Helicobacter pylori SJM180 phospholipase A1 YP_003928413.1 493399 D 765962 CDS YP_003928414.1 308184281 9787230 494523..495647 1 NC_014560.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 495647 9787230 HPSJM_02505 Helicobacter pylori SJM180 DNA polymerase III subunit beta YP_003928414.1 494523 D 765962 CDS YP_003928415.1 308184282 9787231 495660..497981 1 NC_014560.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 497981 gyrB 9787231 gyrB Helicobacter pylori SJM180 DNA gyrase subunit B YP_003928415.1 495660 D 765962 CDS YP_003928416.1 308184283 9787232 498027..499019 1 NC_014560.1 hypothetical protein 499019 9787232 HPSJM_02515 Helicobacter pylori SJM180 hypothetical protein YP_003928416.1 498027 D 765962 CDS YP_003928417.1 308184284 9787233 499006..499761 1 NC_014560.1 hypothetical protein 499761 9787233 HPSJM_02520 Helicobacter pylori SJM180 hypothetical protein YP_003928417.1 499006 D 765962 CDS YP_003928418.1 308184285 9787234 499971..501191 1 NC_014560.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 501191 9787234 HPSJM_02525 Helicobacter pylori SJM180 hypothetical protein YP_003928418.1 499971 D 765962 CDS YP_003928419.1 308184286 9787235 501191..501838 1 NC_014560.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; UDP-sugar diphosphatase 501838 9787235 HPSJM_02530 Helicobacter pylori SJM180 UDP-sugar diphosphatase YP_003928419.1 501191 D 765962 CDS YP_003928420.1 308184287 9787236 501879..503198 1 NC_014560.1 hypothetical protein 503198 9787236 HPSJM_02535 Helicobacter pylori SJM180 hypothetical protein YP_003928420.1 501879 D 765962 CDS YP_003928421.1 308184288 9787237 503203..504582 1 NC_014560.1 COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase, subunit GlcD 504582 9787237 HPSJM_02540 Helicobacter pylori SJM180 glycolate oxidase, subunit GlcD YP_003928421.1 503203 D 765962 CDS YP_003928422.1 308184289 9787238 504605..505369 1 NC_014560.1 COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 505369 9787238 HPSJM_02545 Helicobacter pylori SJM180 dihydrodipicolinate reductase YP_003928422.1 504605 D 765962 CDS YP_003928423.1 308184290 9787239 505656..505775 1 NC_014560.1 hypothetical protein 505775 9787239 HPSJM_02550 Helicobacter pylori SJM180 hypothetical protein YP_003928423.1 505656 D 765962 CDS YP_003928424.1 308184291 9787240 505825..506052 1 NC_014560.1 cag pathogenicity island protein B 506052 9787240 HPSJM_02555 Helicobacter pylori SJM180 cag pathogenicity island protein B YP_003928424.1 505825 D 765962 CDS YP_003928425.1 308184292 9787241 506195..506542 1 NC_014560.1 cag pathogenicity island protein C 506542 9787241 HPSJM_02560 Helicobacter pylori SJM180 cag pathogenicity island protein C YP_003928425.1 506195 D 765962 CDS YP_003928426.1 308184293 9787242 506517..507167 1 NC_014560.1 cag pathogenicity island protein D 507167 9787242 HPSJM_02565 Helicobacter pylori SJM180 cag pathogenicity island protein D YP_003928426.1 506517 D 765962 CDS YP_003928427.1 308184294 9787243 507176..510127 1 NC_014560.1 COG3451 Type IV secretory pathway, VirB4 components; cag pathogenicity island protein E 510127 9787243 HPSJM_02570 Helicobacter pylori SJM180 cag pathogenicity island protein E YP_003928427.1 507176 D 765962 CDS YP_003928428.1 308184295 9787244 510129..510935 1 NC_014560.1 cag island protein 510935 9787244 HPSJM_02575 Helicobacter pylori SJM180 cag island protein YP_003928428.1 510129 D 765962 CDS YP_003928429.1 308184296 9787245 510990..511418 1 NC_014560.1 cag pathogenicity island protein (cag21) 511418 9787245 HPSJM_02580 Helicobacter pylori SJM180 cag pathogenicity island protein (cag21) YP_003928429.1 510990 D 765962 CDS YP_003928430.1 308184297 9787246 complement(511419..511616) 1 NC_014560.1 hypothetical protein 511616 9787246 HPSJM_02585 Helicobacter pylori SJM180 hypothetical protein YP_003928430.1 511419 R 765962 CDS YP_003928431.1 308184298 9787247 511615..512547 1 NC_014560.1 COG0249 Mismatch repair ATPase (MutS family); cag pathogenicity island protein H 512547 9787247 HPSJM_02590 Helicobacter pylori SJM180 cag pathogenicity island protein H YP_003928431.1 511615 D 765962 CDS YP_003928432.1 308184299 9787248 512558..513703 1 NC_014560.1 cag pathogenicity island protein I 513703 9787248 HPSJM_02595 Helicobacter pylori SJM180 cag pathogenicity island protein I YP_003928432.1 512558 D 765962 CDS YP_003928433.1 308184300 9787249 513700..514413 1 NC_014560.1 cag pathogenicity island protein L 514413 9787249 HPSJM_02600 Helicobacter pylori SJM180 cag pathogenicity island protein L YP_003928433.1 513700 D 765962 CDS YP_003928434.1 308184301 9787250 complement(514495..515415) 1 NC_014560.1 cag island protein 515415 9787250 HPSJM_02605 Helicobacter pylori SJM180 cag island protein YP_003928434.1 514495 R 765962 CDS YP_003928435.1 308184302 9787251 complement(515430..516560) 1 NC_014560.1 cag island protein 516560 9787251 HPSJM_02610 Helicobacter pylori SJM180 cag island protein YP_003928435.1 515430 R 765962 CDS YP_003928436.1 308184303 9787252 517762..518142 1 NC_014560.1 cag pathogenicity island protein Q 518142 9787252 HPSJM_02615 Helicobacter pylori SJM180 cag pathogenicity island protein Q YP_003928436.1 517762 D 765962 CDS YP_003928437.1 308184304 9787253 518582..519181 1 NC_014560.1 CAG pathogenicity island protein 13 519181 9787253 HPSJM_02620 Helicobacter pylori SJM180 CAG pathogenicity island protein 13 YP_003928437.1 518582 D 765962 CDS YP_003928438.1 308184305 9787254 complement(519383..520225) 1 NC_014560.1 CAG pathogenicity island protein 12 520225 9787254 HPSJM_02625 Helicobacter pylori SJM180 CAG pathogenicity island protein 12 YP_003928438.1 519383 R 765962 CDS YP_003928439.1 308184306 9787255 complement(520261..520917) 1 NC_014560.1 cag island protein 520917 9787255 HPSJM_02630 Helicobacter pylori SJM180 cag island protein YP_003928439.1 520261 R 765962 CDS YP_003928440.1 308184307 9787256 521298..522056 1 NC_014560.1 COG3736 Type IV secretory pathway, component VirB8; cag pathogenicity island protein V 522056 9787256 HPSJM_02635 Helicobacter pylori SJM180 cag pathogenicity island protein V YP_003928440.1 521298 D 765962 CDS YP_003928441.1 308184308 9787257 522061..523668 1 NC_014560.1 cag pathogenicity island protein W 523668 9787257 HPSJM_02640 Helicobacter pylori SJM180 cag pathogenicity island protein W YP_003928441.1 522061 D 765962 CDS YP_003928442.1 308184309 9787258 523721..525286 1 NC_014560.1 COG3504 Type IV secretory pathway, VirB9 components; cag pathogenicity island protein X 525286 9787258 HPSJM_02645 Helicobacter pylori SJM180 cag pathogenicity island protein X YP_003928442.1 523721 D 765962 CDS YP_003928443.1 308184310 9787259 525301..530781 1 NC_014560.1 COG2948 Type IV secretory pathway, VirB10 components; cag island protein 530781 9787259 HPSJM_02650 Helicobacter pylori SJM180 cag island protein YP_003928443.1 525301 D 765962 CDS YP_003928444.1 308184311 9787260 530916..531515 1 NC_014560.1 cag pathogenicity island protein (cag6) 531515 9787260 HPSJM_02655 Helicobacter pylori SJM180 cag pathogenicity island protein (cag6) YP_003928444.1 530916 D 765962 CDS YP_003928445.1 308184312 9787261 531520..532512 1 NC_014560.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; cag island protein, DNA transfer protein 532512 9787261 HPSJM_02660 Helicobacter pylori SJM180 cag island protein, DNA transfer protein YP_003928445.1 531520 D 765962 CDS YP_003928446.1 308184313 9787262 532521..534767 1 NC_014560.1 COG3505 Type IV secretory pathway, VirD4 components; cag island protein, DNA transfer protein 534767 9787262 HPSJM_02665 Helicobacter pylori SJM180 cag island protein, DNA transfer protein YP_003928446.1 532521 D 765962 CDS YP_003928447.1 308184314 9787263 complement(534886..535395) 1 NC_014560.1 cag pathogenicity island protein Gamma 535395 9787263 HPSJM_02670 Helicobacter pylori SJM180 cag pathogenicity island protein Gamma YP_003928447.1 534886 R 765962 CDS YP_003928448.1 308184315 9787264 complement(535405..536850) 1 NC_014560.1 cag pathogenicity island protein 3 536850 9787264 HPSJM_02675 Helicobacter pylori SJM180 cag pathogenicity island protein 3 YP_003928448.1 535405 R 765962 CDS YP_003928449.1 308184316 9787265 complement(536850..537200) 1 NC_014560.1 COG0551 Zn-finger domain associated with topoisomerase type I; cag pathogenicity island protein Epsilon 537200 9787265 HPSJM_02680 Helicobacter pylori SJM180 cag pathogenicity island protein Epsilon YP_003928449.1 536850 R 765962 CDS YP_003928450.1 308184317 9787266 complement(537308..537655) 1 NC_014560.1 cag pathogenicity island protein (cag1) 537655 9787266 HPSJM_02685 Helicobacter pylori SJM180 cag pathogenicity island protein (cag1) YP_003928450.1 537308 R 765962 CDS YP_003928451.1 308184318 9787267 537827..538681 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 538681 9787267 HPSJM_02690 Helicobacter pylori SJM180 hypothetical protein YP_003928451.1 537827 D 765962 CDS YP_003928452.1 308184319 9787268 complement(538912..540357) 1 NC_014560.1 COG0174 Glutamine synthetase; glutamine synthetase 540357 9787268 HPSJM_02695 Helicobacter pylori SJM180 glutamine synthetase YP_003928452.1 538912 R 765962 CDS YP_003928453.1 308184320 9787269 540581..540883 1 NC_014560.1 hypothetical protein 540883 9787269 HPSJM_02700 Helicobacter pylori SJM180 hypothetical protein YP_003928453.1 540581 D 765962 CDS YP_003928454.1 308184321 9787270 541275..541724 1 NC_014560.1 COG0359 Ribosomal protein L9; 50S ribosomal protein L9 541724 rplI 9787270 rplI Helicobacter pylori SJM180 50S ribosomal protein L9 YP_003928454.1 541275 D 765962 CDS YP_003928455.1 308184322 9787271 541728..542270 1 NC_014560.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease peptidase subunit 542270 9787271 HPSJM_02710 Helicobacter pylori SJM180 ATP-dependent protease peptidase subunit YP_003928455.1 541728 D 765962 CDS YP_003928456.1 308184323 9787272 542270..543601 1 NC_014560.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU 543601 hslU 9787272 hslU Helicobacter pylori SJM180 ATP-dependent protease ATP-binding subunit HslU YP_003928456.1 542270 D 765962 CDS YP_003928457.1 308184324 9787273 543601..544506 1 NC_014560.1 COG1159 GTPase; GTP-binding protein Era 544506 era 9787273 era Helicobacter pylori SJM180 GTP-binding protein Era YP_003928457.1 543601 D 765962 CDS YP_003928458.1 308184325 9787274 544503..545495 1 NC_014560.1 COG3034 Uncharacterized protein conserved in bacteria; conserved hypothetical secreted protein 545495 9787274 HPSJM_02725 Helicobacter pylori SJM180 conserved hypothetical secreted protein YP_003928458.1 544503 D 765962 CDS YP_003928459.1 308184326 9787275 545680..546354 1 NC_014560.1 hypothetical protein 546354 9787275 HPSJM_02730 Helicobacter pylori SJM180 hypothetical protein YP_003928459.1 545680 D 765962 CDS YP_003928460.1 308184327 9787276 546351..546527 1 NC_014560.1 hypothetical protein 546527 9787276 HPSJM_02735 Helicobacter pylori SJM180 hypothetical protein YP_003928460.1 546351 D 765962 CDS YP_003928461.1 308184328 9787277 546603..547385 1 NC_014560.1 hypothetical protein 547385 9787277 HPSJM_02740 Helicobacter pylori SJM180 hypothetical protein YP_003928461.1 546603 D 765962 CDS YP_003928462.1 308184329 9787278 548560..548775 1 NC_014560.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; hypothetical protein 548775 9787278 HPSJM_02755 Helicobacter pylori SJM180 hypothetical protein YP_003928462.1 548560 D 765962 CDS YP_003928463.1 308184330 9787279 complement(549053..549214) 1 NC_014560.1 urease-enhancing factor 549214 9787279 HPSJM_02760 Helicobacter pylori SJM180 urease-enhancing factor YP_003928463.1 549053 R 765962 CDS YP_003928464.1 308184331 9787280 549621..553166 1 NC_014560.1 cag pathogenicity island protein (cag26) 553166 9787280 HPSJM_02765 Helicobacter pylori SJM180 cag pathogenicity island protein (cag26) YP_003928464.1 549621 D 765962 CDS YP_003928465.1 308184332 9787281 553814..554077 1 NC_014560.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; hypothetical protein 554077 9787281 HPSJM_02770 Helicobacter pylori SJM180 hypothetical protein YP_003928465.1 553814 D 765962 CDS YP_003928466.1 308184333 9787282 complement(554233..555000) 1 NC_014560.1 COG0796 Glutamate racemase; glutamate racemase 555000 9787282 HPSJM_02775 Helicobacter pylori SJM180 glutamate racemase YP_003928466.1 554233 R 765962 CDS YP_003928467.1 308184334 9787283 complement(555037..556353) 1 NC_014560.1 COG1158 Transcription termination factor; transcription termination factor Rho 556353 rho 9787283 rho Helicobacter pylori SJM180 transcription termination factor Rho YP_003928467.1 555037 R 765962 CDS YP_003928468.1 308184335 9787284 556617..556820 1 NC_014560.1 COG0254 Ribosomal protein L31; 50S ribosomal protein L31 556820 rpmE 9787284 rpmE Helicobacter pylori SJM180 50S ribosomal protein L31 YP_003928468.1 556617 D 765962 CDS YP_003928469.1 308184336 9787285 556845..557708 1 NC_014560.1 COG0313 Predicted methyltransferases; putative methylase 557708 9787285 HPSJM_02790 Helicobacter pylori SJM180 putative methylase YP_003928469.1 556845 D 765962 CDS YP_003928470.1 308184337 9787286 557721..558404 1 NC_014560.1 COG0566 rRNA methylases; RNA methyltransferase 558404 9787286 HPSJM_02795 Helicobacter pylori SJM180 RNA methyltransferase YP_003928470.1 557721 D 765962 CDS YP_003928471.1 308184338 9787287 558417..559391 1 NC_014560.1 hypothetical protein 559391 9787287 HPSJM_02800 Helicobacter pylori SJM180 hypothetical protein YP_003928471.1 558417 D 765962 CDS YP_003928472.1 308184339 9787288 559388..560209 1 NC_014560.1 COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 560209 9787288 HPSJM_02805 Helicobacter pylori SJM180 hypothetical protein YP_003928472.1 559388 D 765962 CDS YP_003928473.1 308184340 9787289 560926..561117 1 NC_014560.1 hypothetical protein 561117 9787289 HPSJM_02820 Helicobacter pylori SJM180 hypothetical protein YP_003928473.1 560926 D 765962 CDS YP_003928474.1 308184341 9787290 complement(561191..562129) 1 NC_014560.1 COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 562129 9787290 HPSJM_02825 Helicobacter pylori SJM180 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_003928474.1 561191 R 765962 CDS YP_003928475.1 308184342 9787291 complement(562152..563390) 1 NC_014560.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 563390 9787291 HPSJM_02830 Helicobacter pylori SJM180 3-oxoacyl-(acyl carrier protein) synthase II YP_003928475.1 562152 R 765962 CDS YP_003928476.1 308184343 9787292 complement(563494..563730) 1 NC_014560.1 COG0236 Acyl carrier protein; acyl carrier protein 563730 acpP 9787292 acpP Helicobacter pylori SJM180 acyl carrier protein YP_003928476.1 563494 R 765962 CDS YP_003928477.1 308184344 9787293 complement(563956..564699) 1 NC_014560.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase 564699 fabG 9787293 fabG Helicobacter pylori SJM180 3-ketoacyl-(acyl-carrier-protein) reductase YP_003928477.1 563956 R 765962 CDS YP_003928478.1 308184345 9787294 complement(564738..564950) 1 NC_014560.1 COG0828 Ribosomal protein S21; 30S ribosomal protein S21 564950 rpsU 9787294 rpsU Helicobacter pylori SJM180 30S ribosomal protein S21 YP_003928478.1 564738 R 765962 CDS YP_003928479.1 308184346 9787295 complement(565051..566301) 1 NC_014560.1 hypothetical protein 566301 9787295 HPSJM_02850 Helicobacter pylori SJM180 hypothetical protein YP_003928479.1 565051 R 765962 CDS YP_003928480.1 308184347 9787296 566476..566721 1 NC_014560.1 hypothetical protein 566721 9787296 HPSJM_02855 Helicobacter pylori SJM180 hypothetical protein YP_003928480.1 566476 D 765962 CDS YP_003928481.1 308184348 9787297 complement(566745..567392) 1 NC_014560.1 COG3059 Predicted membrane protein; hypothetical protein 567392 9787297 HPSJM_02860 Helicobacter pylori SJM180 hypothetical protein YP_003928481.1 566745 R 765962 CDS YP_003928482.1 308184349 9787298 complement(567505..568326) 1 NC_014560.1 COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 568326 dapF 9787298 dapF Helicobacter pylori SJM180 diaminopimelate epimerase YP_003928482.1 567505 R 765962 CDS YP_003928483.1 308184350 9787299 568441..569487 1 NC_014560.1 COG0628 Predicted permease; hypothetical protein 569487 9787299 HPSJM_02870 Helicobacter pylori SJM180 hypothetical protein YP_003928483.1 568441 D 765962 CDS YP_003928484.1 308184351 9787300 complement(569628..570395) 1 NC_014560.1 hypothetical protein 570395 9787300 HPSJM_02875 Helicobacter pylori SJM180 hypothetical protein YP_003928484.1 569628 R 765962 CDS YP_003928485.1 308184352 9787301 complement(570539..571639) 1 NC_014560.1 COG0012 Predicted GTPase, probable translation factor; GTP-dependent nucleic acid-binding protein EngD 571639 9787301 HPSJM_02880 Helicobacter pylori SJM180 GTP-dependent nucleic acid-binding protein EngD YP_003928485.1 570539 R 765962 CDS YP_003928486.1 308184353 9787302 complement(571641..573131) 1 NC_014560.1 COG0260 Leucyl aminopeptidase; leucyl aminopeptidase 573131 9787302 HPSJM_02885 Helicobacter pylori SJM180 leucyl aminopeptidase YP_003928486.1 571641 R 765962 CDS YP_003928487.1 308184354 9787303 complement(573179..573757) 1 NC_014560.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 573757 9787303 HPSJM_02890 Helicobacter pylori SJM180 hypothetical protein YP_003928487.1 573179 R 765962 CDS YP_003928488.1 308184355 9787304 complement(573772..574311) 1 NC_014560.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 574311 9787304 HPSJM_02895 Helicobacter pylori SJM180 adenine phosphoribosyltransferase YP_003928488.1 573772 R 765962 CDS YP_003928489.1 308184356 9787305 complement(574373..574705) 1 NC_014560.1 hypothetical protein 574705 9787305 HPSJM_02900 Helicobacter pylori SJM180 hypothetical protein YP_003928489.1 574373 R 765962 CDS YP_003928490.1 308184357 9787306 complement(574757..575212) 1 NC_014560.1 COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B 575212 9787306 HPSJM_02905 Helicobacter pylori SJM180 ribose-5-phosphate isomerase B YP_003928490.1 574757 R 765962 CDS YP_003928491.1 308184358 9787307 complement(575233..575931) 1 NC_014560.1 COG1994 Zn-dependent proteases; membrane protein 575931 9787307 HPSJM_02910 Helicobacter pylori SJM180 membrane protein YP_003928491.1 575233 R 765962 CDS YP_003928492.1 308184359 9787308 complement(575940..576812) 1 NC_014560.1 COG0681 Signal peptidase I; signal peptidase I (lepB) 576812 9787308 HPSJM_02915 Helicobacter pylori SJM180 signal peptidase I (lepB) YP_003928492.1 575940 R 765962 CDS YP_003928493.1 308184360 9787309 complement(576813..577685) 1 NC_014560.1 COG0190 5, 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5, 10-methylene-tetrahydrofolate dehydrogenase/ 5, 10-methylene-tetrahydrofolate cyclohydrolase 577685 9787309 HPSJM_02920 Helicobacter pylori SJM180 bifunctional 5, 10-methylene-tetrahydrofolate dehydrogenase/ 5, 10-methylene-tetrahydrofolate cyclohydrolase YP_003928493.1 576813 R 765962 CDS YP_003928494.1 308184361 9787310 complement(577766..579817) 1 NC_014560.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; hypothetical protein 579817 9787310 HPSJM_02925 Helicobacter pylori SJM180 hypothetical protein YP_003928494.1 577766 R 765962 CDS YP_003928495.1 308184362 9787311 complement(579823..580377) 1 NC_014560.1 hypothetical protein 580377 9787311 HPSJM_02930 Helicobacter pylori SJM180 hypothetical protein YP_003928495.1 579823 R 765962 CDS YP_003928496.1 308184363 9787312 complement(580384..581406) 1 NC_014560.1 COG4692 Predicted neuraminidase (sialidase); hypothetical protein 581406 9787312 HPSJM_02935 Helicobacter pylori SJM180 hypothetical protein YP_003928496.1 580384 R 765962 CDS YP_003928497.1 308184364 9787313 complement(581480..582499) 1 NC_014560.1 COG0418 Dihydroorotase; dihydroorotase 582499 9787313 HPSJM_02940 Helicobacter pylori SJM180 dihydroorotase YP_003928497.1 581480 R 765962 CDS YP_003928498.1 308184365 9787314 complement(582503..583465) 1 NC_014560.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; putative siderophore-mediated iron transport protein 583465 9787314 HPSJM_02945 Helicobacter pylori SJM180 putative siderophore-mediated iron transport protein YP_003928498.1 582503 R 765962 CDS YP_003928499.1 308184366 9787315 complement(583449..584330) 1 NC_014560.1 hypothetical protein 584330 9787315 HPSJM_02950 Helicobacter pylori SJM180 hypothetical protein YP_003928499.1 583449 R 765962 CDS YP_003928500.1 308184367 9787316 complement(584327..584698) 1 NC_014560.1 COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein 584698 9787316 HPSJM_02955 Helicobacter pylori SJM180 flagellar motor switch protein YP_003928500.1 584327 R 765962 CDS YP_003928501.1 308184368 9787317 complement(584780..585421) 1 NC_014560.1 COG0177 Predicted EndoIII-related endonuclease; endonuclease III 585421 9787317 HPSJM_02960 Helicobacter pylori SJM180 endonuclease III YP_003928501.1 584780 R 765962 CDS YP_003928502.1 308184369 9787318 complement(585418..585654) 1 NC_014560.1 COG1918 Fe2+ transport system protein A; hypothetical protein 585654 9787318 HPSJM_02965 Helicobacter pylori SJM180 hypothetical protein YP_003928502.1 585418 R 765962 CDS YP_003928503.1 308184370 9787319 complement(585656..588589) 1 NC_014560.1 hypothetical protein 588589 9787319 HPSJM_02970 Helicobacter pylori SJM180 hypothetical protein YP_003928503.1 585656 R 765962 CDS YP_003928504.1 308184371 9787320 588507..589496 1 NC_014560.1 COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 589496 9787320 HPSJM_02975 Helicobacter pylori SJM180 hypothetical protein YP_003928504.1 588507 D 765962 CDS YP_003928505.1 308184372 9787321 589681..590022 1 NC_014560.1 COG1146 Ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 590022 oorD 9787321 oorD Helicobacter pylori SJM180 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_003928505.1 589681 D 765962 CDS YP_003928506.1 308184373 9787322 590022..591149 1 NC_014560.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 591149 oorA 9787322 oorA Helicobacter pylori SJM180 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_003928506.1 590022 D 765962 CDS YP_003928507.1 308184374 9787323 591151..591972 1 NC_014560.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 591972 oorB 9787323 oorB Helicobacter pylori SJM180 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_003928507.1 591151 D 765962 CDS YP_003928508.1 308184375 9787324 591972..592526 1 NC_014560.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 592526 oorC 9787324 oorC Helicobacter pylori SJM180 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_003928508.1 591972 D 765962 CDS YP_003928509.1 308184376 9787325 592639..594417 1 NC_014560.1 COG5610 Predicted hydrolase (HAD superfamily); hypothetical protein 594417 9787325 HPSJM_03000 Helicobacter pylori SJM180 hypothetical protein YP_003928509.1 592639 D 765962 CDS YP_003928510.1 308184377 9787326 594561..594725 1 NC_014560.1 hypothetical protein 594725 9787326 HPSJM_03005 Helicobacter pylori SJM180 hypothetical protein YP_003928510.1 594561 D 765962 CDS YP_003928511.1 308184378 9787327 594735..596207 1 NC_014560.1 COG1495 Disulfide bond formation protein DsbB; putative disulfide oxidoreductase B (DsbB-like protein); putative membrane protein 596207 9787327 HPSJM_03010 Helicobacter pylori SJM180 putative disulfide oxidoreductase B (DsbB-like protein); putative membrane protein YP_003928511.1 594735 D 765962 CDS YP_003928512.1 308184379 9787328 complement(596405..596524) 1 NC_014560.1 hypothetical protein 596524 9787328 HPSJM_03015 Helicobacter pylori SJM180 hypothetical protein YP_003928512.1 596405 R 765962 CDS YP_003928513.1 308184380 9787329 596682..597260 1 NC_014560.1 tumor necrosis factor alpha-inducing protein 597260 9787329 HPSJM_03020 Helicobacter pylori SJM180 tumor necrosis factor alpha-inducing protein YP_003928513.1 596682 D 765962 CDS YP_003928514.1 308184381 9787330 complement(597263..599245) 1 NC_014560.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1A 599245 9787330 HPSJM_03025 Helicobacter pylori SJM180 penicillin-binding protein 1A YP_003928514.1 597263 R 765962 CDS YP_003928515.1 308184382 9787331 complement(599246..600367) 1 NC_014560.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 600367 9787331 HPSJM_03030 Helicobacter pylori SJM180 8-amino-7-oxononanoate synthase YP_003928515.1 599246 R 765962 CDS YP_003928516.1 308184383 9787332 complement(600390..601691) 1 NC_014560.1 COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 601691 9787332 HPSJM_03035 Helicobacter pylori SJM180 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) YP_003928516.1 600390 R 765962 CDS YP_003928517.1 308184384 9787333 complement(601762..603264) 1 NC_014560.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (spaB) 603264 9787333 HPSJM_03040 Helicobacter pylori SJM180 multidrug resistance protein (spaB) YP_003928517.1 601762 R 765962 CDS YP_003928518.1 308184385 9787334 603698..605230 1 NC_014560.1 COG1344 Flagellin and related hook-associated proteins; flagellin A 605230 9787334 HPSJM_03045 Helicobacter pylori SJM180 flagellin A YP_003928518.1 603698 D 765962 CDS YP_003928519.1 308184386 9787335 605359..606015 1 NC_014560.1 COG2231 Uncharacterized protein related to Endonuclease III; 3-methyladenine DNA glycosylase 606015 9787335 HPSJM_03050 Helicobacter pylori SJM180 3-methyladenine DNA glycosylase YP_003928519.1 605359 D 765962 CDS YP_003928520.1 308184387 9787336 606012..606629 1 NC_014560.1 hypothetical protein 606629 9787336 HPSJM_03055 Helicobacter pylori SJM180 hypothetical protein YP_003928520.1 606012 D 765962 CDS YP_003928521.1 308184388 9787337 606698..607717 1 NC_014560.1 COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 607717 hemE 9787337 hemE Helicobacter pylori SJM180 uroporphyrinogen decarboxylase YP_003928521.1 606698 D 765962 CDS YP_003928522.1 308184389 9787338 607728..609161 1 NC_014560.1 COG1538 Outer membrane protein; outer-membrane protein of the hefABC efflux system HefA 609161 9787338 HPSJM_03065 Helicobacter pylori SJM180 outer-membrane protein of the hefABC efflux system HefA YP_003928522.1 607728 D 765962 CDS YP_003928523.1 308184390 9787339 609171..609875 1 NC_014560.1 COG0845 Membrane-fusion protein; membrane fusion protein of the hefABC efflux system HefB 609875 9787339 HPSJM_03070 Helicobacter pylori SJM180 membrane fusion protein of the hefABC efflux system HefB YP_003928523.1 609171 D 765962 CDS YP_003928524.1 308184391 9787340 609888..612968 1 NC_014560.1 COG0841 Cation/multidrug efflux pump; cytoplasmic pump protein of the hefABC efflux system HefC 612968 9787340 HPSJM_03075 Helicobacter pylori SJM180 cytoplasmic pump protein of the hefABC efflux system HefC YP_003928524.1 609888 D 765962 CDS YP_003928525.1 308184392 9787341 612965..613534 1 NC_014560.1 COG0015 Adenylosuccinate lyase; hypothetical protein 613534 9787341 HPSJM_03080 Helicobacter pylori SJM180 hypothetical protein YP_003928525.1 612965 D 765962 CDS YP_003928526.1 308184393 9787342 613678..623244 1 NC_014560.1 putative vacuolating cytotoxin (VacA)-like protein 623244 9787342 HPSJM_03085 Helicobacter pylori SJM180 putative vacuolating cytotoxin (VacA)-like protein YP_003928526.1 613678 D 765962 CDS YP_003928527.1 308184394 9787343 complement(623303..623656) 1 NC_014560.1 COG0842 ABC-type multidrug transport system, permease component; ABC-type multidrug transport system, permease component 623656 9787343 HPSJM_03090 Helicobacter pylori SJM180 ABC-type multidrug transport system, permease component YP_003928527.1 623303 R 765962 CDS YP_003928528.1 308184395 9787344 complement(623820..624059) 1 NC_014560.1 COG0842 ABC-type multidrug transport system, permease component; ABC transporter, permease 624059 9787344 HPSJM_03095 Helicobacter pylori SJM180 ABC transporter, permease YP_003928528.1 623820 R 765962 CDS YP_003928529.1 308184396 9787345 complement(624059..624418) 1 NC_014560.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter; ATP-binding protein 624418 9787345 HPSJM_03100 Helicobacter pylori SJM180 ABC transporter; ATP-binding protein YP_003928529.1 624059 R 765962 CDS YP_003928530.1 308184397 9787346 complement(624493..624759) 1 NC_014560.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 624759 9787346 HPSJM_03105 Helicobacter pylori SJM180 ABC transporter ATP-binding protein YP_003928530.1 624493 R 765962 CDS YP_003928531.1 308184398 9787347 complement(625075..625407) 1 NC_014560.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; hypothetical protein 625407 9787347 HPSJM_03110 Helicobacter pylori SJM180 hypothetical protein YP_003928531.1 625075 R 765962 CDS YP_003928532.1 308184399 9787348 complement(625531..627501) 1 NC_014560.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA 627501 ligA 9787348 ligA Helicobacter pylori SJM180 NAD-dependent DNA ligase LigA YP_003928532.1 625531 R 765962 CDS YP_003928533.1 308184400 9787349 627579..628520 1 NC_014560.1 COG0835 Chemotaxis signal transduction protein; chemotaxis protein (cheV) 628520 9787349 HPSJM_03120 Helicobacter pylori SJM180 chemotaxis protein (cheV) YP_003928533.1 627579 D 765962 CDS YP_003928534.1 308184401 9787350 628555..630288 1 NC_014560.1 COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 630288 aspS 9787350 aspS Helicobacter pylori SJM180 aspartyl-tRNA synthetase YP_003928534.1 628555 D 765962 CDS YP_003928535.1 308184402 9787351 630305..630880 1 NC_014560.1 COG0563 Adenylate kinase and related kinases; adenylate kinase 630880 adk 9787351 adk Helicobacter pylori SJM180 adenylate kinase YP_003928535.1 630305 D 765962 CDS YP_003928536.1 308184403 9787352 630905..631903 1 NC_014560.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 631903 9787352 HPSJM_03135 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928536.1 630905 D 765962 CDS YP_003928537.1 308184404 9787353 631908..632513 1 NC_014560.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 632513 9787353 HPSJM_03140 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928537.1 631908 D 765962 CDS YP_003928538.1 308184405 9787354 632455..633261 1 NC_014560.1 putative lipopolysaccharide biosynthesis protein 633261 9787354 HPSJM_03145 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928538.1 632455 D 765962 CDS YP_003928539.1 308184406 9787355 633317..633838 1 NC_014560.1 COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 633838 9787355 HPSJM_03150 Helicobacter pylori SJM180 inorganic pyrophosphatase YP_003928539.1 633317 D 765962 CDS YP_003928540.1 308184407 9787356 complement(633979..636231) 1 NC_014560.1 COG1193 Mismatch repair ATPase (MutS family); recombination and DNA strand exchange inhibitor protein 636231 9787356 HPSJM_03155 Helicobacter pylori SJM180 recombination and DNA strand exchange inhibitor protein YP_003928540.1 633979 R 765962 CDS YP_003928541.1 308184408 9787357 complement(636224..636604) 1 NC_014560.1 hypothetical protein 636604 9787357 HPSJM_03160 Helicobacter pylori SJM180 hypothetical protein YP_003928541.1 636224 R 765962 CDS YP_003928542.1 308184409 9787358 complement(636604..637953) 1 NC_014560.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 637953 murC 9787358 murC Helicobacter pylori SJM180 UDP-N-acetylmuramate--L-alanine ligase YP_003928542.1 636604 R 765962 CDS YP_003928543.1 308184410 9787359 complement(637946..639073) 1 NC_014560.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; hypothetical protein 639073 9787359 HPSJM_03170 Helicobacter pylori SJM180 hypothetical protein YP_003928543.1 637946 R 765962 CDS YP_003928544.1 308184411 9787360 639193..640272 1 NC_014560.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 640272 ispG 9787360 ispG Helicobacter pylori SJM180 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_003928544.1 639193 D 765962 CDS YP_003928545.1 308184412 9787361 640275..641480 1 NC_014560.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase; tetrahydrodipicolinate N-succinyltransferase (dapD) 641480 9787361 HPSJM_03180 Helicobacter pylori SJM180 tetrahydrodipicolinate N-succinyltransferase (dapD) YP_003928545.1 640275 D 765962 CDS YP_003928546.1 308184413 9787362 641492..642550 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; cysteine-rich protein F 642550 9787362 HPSJM_03185 Helicobacter pylori SJM180 cysteine-rich protein F YP_003928546.1 641492 D 765962 CDS YP_003928547.1 308184414 9787363 642670..644718 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 644718 9787363 HPSJM_03190 Helicobacter pylori SJM180 hypothetical protein YP_003928547.1 642670 D 765962 CDS YP_003928548.1 308184415 9787364 complement(644766..645350) 1 NC_014560.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); modulator of drug activity B 645350 9787364 HPSJM_03195 Helicobacter pylori SJM180 modulator of drug activity B YP_003928548.1 644766 R 765962 CDS YP_003928549.1 308184416 9787365 complement(645347..645457) 1 NC_014560.1 hypothetical protein 645457 9787365 HPSJM_03200 Helicobacter pylori SJM180 hypothetical protein YP_003928549.1 645347 R 765962 CDS YP_003928550.1 308184417 9787366 645511..646665 1 NC_014560.1 COG1740 Ni, Fe-hydrogenase I small subunit; Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor) 646665 9787366 HPSJM_03205 Helicobacter pylori SJM180 Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor) YP_003928550.1 645511 D 765962 CDS YP_003928551.1 308184418 9787367 646675..648411 1 NC_014560.1 COG0374 Ni, Fe-hydrogenase I large subunit; nickel-dependent hydrogenase, large subunit 648411 9787367 HPSJM_03210 Helicobacter pylori SJM180 nickel-dependent hydrogenase, large subunit YP_003928551.1 646675 D 765962 CDS YP_003928552.1 308184419 9787368 648424..649098 1 NC_014560.1 COG1969 Ni, Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 649098 9787368 HPSJM_03215 Helicobacter pylori SJM180 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_003928552.1 648424 D 765962 CDS YP_003928553.1 308184420 9787369 649095..649631 1 NC_014560.1 COG0680 Ni, Fe-hydrogenase maturation factor; hydrogenase expression/formation protein 649631 9787369 HPSJM_03220 Helicobacter pylori SJM180 hydrogenase expression/formation protein YP_003928553.1 649095 D 765962 CDS YP_003928554.1 308184421 9787370 649633..651171 1 NC_014560.1 hypothetical protein 651171 9787370 HPSJM_03225 Helicobacter pylori SJM180 hypothetical protein YP_003928554.1 649633 D 765962 CDS YP_003928555.1 308184422 9787371 complement(651176..651529) 1 NC_014560.1 hypothetical protein 651529 9787371 HPSJM_03230 Helicobacter pylori SJM180 hypothetical protein YP_003928555.1 651176 R 765962 CDS YP_003928556.1 308184423 9787372 complement(651726..652178) 1 NC_014560.1 hypothetical protein 652178 9787372 HPSJM_03235 Helicobacter pylori SJM180 hypothetical protein YP_003928556.1 651726 R 765962 CDS YP_003928557.1 308184424 9787373 652598..653284 1 NC_014560.1 outer membrane protein (omp13) 653284 9787373 HPSJM_03240 Helicobacter pylori SJM180 outer membrane protein (omp13) YP_003928557.1 652598 D 765962 CDS YP_003928558.1 308184425 9787374 complement(653522..654199) 1 NC_014560.1 COG0603 Predicted PP-loop superfamily ATPase; hypothetical protein 654199 9787374 HPSJM_03245 Helicobacter pylori SJM180 hypothetical protein YP_003928558.1 653522 R 765962 CDS YP_003928559.1 308184426 9787375 complement(654199..654303) 1 NC_014560.1 hypothetical protein 654303 9787375 HPSJM_03250 Helicobacter pylori SJM180 hypothetical protein YP_003928559.1 654199 R 765962 CDS YP_003928560.1 308184427 9787376 654263..655471 1 NC_014560.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; putative polynucleotide adenylyltransferase; putative poly(A) polymerase 655471 9787376 HPSJM_03255 Helicobacter pylori SJM180 putative polynucleotide adenylyltransferase; putative poly(A) polymerase YP_003928560.1 654263 D 765962 CDS YP_003928561.1 308184428 9787377 655494..655988 1 NC_014560.1 hypothetical protein 655988 9787377 HPSJM_03260 Helicobacter pylori SJM180 hypothetical protein YP_003928561.1 655494 D 765962 CDS YP_003928562.1 308184429 9787378 656045..656860 1 NC_014560.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; putative 3-hydroxy acid dehydrogenase 656860 9787378 HPSJM_03265 Helicobacter pylori SJM180 putative 3-hydroxy acid dehydrogenase YP_003928562.1 656045 D 765962 CDS YP_003928563.1 308184430 9787379 656862..657515 1 NC_014560.1 COG0778 Nitroreductase; NAD(P)H-flavin oxidoreductase 657515 9787379 HPSJM_03270 Helicobacter pylori SJM180 NAD(P)H-flavin oxidoreductase YP_003928563.1 656862 D 765962 CDS YP_003928564.1 308184431 9787380 657681..659000 1 NC_014560.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamylglutaminyl-tRNA synthetase 659000 9787380 HPSJM_03275 Helicobacter pylori SJM180 glutamylglutaminyl-tRNA synthetase YP_003928564.1 657681 D 765962 CDS YP_003928565.1 308184432 9787381 658997..659290 1 NC_014560.1 COG0762 Predicted integral membrane protein; hypothetical protein 659290 9787381 HPSJM_03280 Helicobacter pylori SJM180 hypothetical protein YP_003928565.1 658997 D 765962 CDS YP_003928566.1 308184433 9787382 659299..660981 1 NC_014560.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); soluble lytic murein transglycosylase 660981 9787382 HPSJM_03285 Helicobacter pylori SJM180 soluble lytic murein transglycosylase YP_003928566.1 659299 D 765962 CDS YP_003928567.1 308184434 9787383 660978..661799 1 NC_014560.1 COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 661799 9787383 HPSJM_03290 Helicobacter pylori SJM180 UTP-glucose-1-phosphate uridylyltransferase YP_003928567.1 660978 D 765962 CDS YP_003928568.1 308184435 9787384 661811..662218 1 NC_014560.1 hypothetical protein 662218 9787384 HPSJM_03295 Helicobacter pylori SJM180 hypothetical protein YP_003928568.1 661811 D 765962 CDS YP_003928569.1 308184436 9787385 662221..663489 1 NC_014560.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 663489 9787385 HPSJM_03300 Helicobacter pylori SJM180 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003928569.1 662221 D 765962 CDS YP_003928570.1 308184437 9787386 663547..664953 1 NC_014560.1 COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 664953 aspA 9787386 aspA Helicobacter pylori SJM180 aspartate ammonia-lyase YP_003928570.1 663547 D 765962 CDS YP_003928571.1 308184438 9787387 665010..665588 1 NC_014560.1 COG1573 Uracil-DNA glycosylase; hypothetical protein 665588 9787387 HPSJM_03310 Helicobacter pylori SJM180 hypothetical protein YP_003928571.1 665010 D 765962 CDS YP_003928572.1 308184439 9787388 complement(665597..666964) 1 NC_014560.1 Alpha1, 3-fucosyltransferase 666964 9787388 HPSJM_03315 Helicobacter pylori SJM180 Alpha1, 3-fucosyltransferase YP_003928572.1 665597 R 765962 CDS YP_003928573.1 308184440 9787389 complement(667004..667627) 1 NC_014560.1 COG0560 Phosphoserine phosphatase; phosphoserine phosphatase 667627 9787389 HPSJM_03320 Helicobacter pylori SJM180 phosphoserine phosphatase YP_003928573.1 667004 R 765962 CDS YP_003928574.1 308184441 9787390 complement(667642..668145) 1 NC_014560.1 COG1528 Ferritin-like protein; nonheme iron-containing ferritin 668145 9787390 HPSJM_03325 Helicobacter pylori SJM180 nonheme iron-containing ferritin YP_003928574.1 667642 R 765962 CDS YP_003928575.1 308184442 9787391 668447..669529 1 NC_014560.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 669529 9787391 HPSJM_03330 Helicobacter pylori SJM180 hypothetical protein YP_003928575.1 668447 D 765962 CDS YP_003928576.1 308184443 9787392 669702..672362 1 NC_014560.1 COG4775 Outer membrane protein/protective antigen OMA87; protective surface antigen D15 672362 9787392 HPSJM_03335 Helicobacter pylori SJM180 protective surface antigen D15 YP_003928576.1 669702 D 765962 CDS YP_003928577.1 308184444 9787393 672364..673425 1 NC_014560.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 673425 9787393 HPSJM_03340 Helicobacter pylori SJM180 hypothetical protein YP_003928577.1 672364 D 765962 CDS YP_003928578.1 308184445 9787394 673431..674732 1 NC_014560.1 COG0612 Predicted Zn-dependent peptidases; processing zinc-metalloprotease 674732 9787394 HPSJM_03345 Helicobacter pylori SJM180 processing zinc-metalloprotease YP_003928578.1 673431 D 765962 CDS YP_003928579.1 308184446 9787395 674732..676156 1 NC_014560.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); aspartyl/glutamyl-tRNA amidotransferase subunit B 676156 gatB 9787395 gatB Helicobacter pylori SJM180 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_003928579.1 674732 D 765962 CDS YP_003928580.1 308184447 9787396 676156..677358 1 NC_014560.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 677358 9787396 HPSJM_03355 Helicobacter pylori SJM180 hypothetical protein YP_003928580.1 676156 D 765962 CDS YP_003928581.1 308184448 9787397 677369..678376 1 NC_014560.1 hypothetical protein 678376 9787397 HPSJM_03360 Helicobacter pylori SJM180 hypothetical protein YP_003928581.1 677369 D 765962 CDS YP_003928582.1 308184449 9787398 678378..678809 1 NC_014560.1 COG0328 Ribonuclease HI; ribonuclease H 678809 rnhA 9787398 rnhA Helicobacter pylori SJM180 ribonuclease H YP_003928582.1 678378 D 765962 CDS YP_003928583.1 308184450 9787399 678821..679540 1 NC_014560.1 COG0571 dsRNA-specific ribonuclease; ribonuclease III 679540 rnc 9787399 rnc Helicobacter pylori SJM180 ribonuclease III YP_003928583.1 678821 D 765962 CDS YP_003928584.1 308184451 9787400 679537..680634 1 NC_014560.1 COG0082 Chorismate synthase; chorismate synthase 680634 9787400 HPSJM_03375 Helicobacter pylori SJM180 chorismate synthase YP_003928584.1 679537 D 765962 CDS YP_003928585.1 308184452 9787401 680671..681186 1 NC_014560.1 hypothetical protein 681186 9787401 HPSJM_03380 Helicobacter pylori SJM180 hypothetical protein YP_003928585.1 680671 D 765962 CDS YP_003928586.1 308184453 9787402 681186..682559 1 NC_014560.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 682559 9787402 HPSJM_03385 Helicobacter pylori SJM180 coproporphyrinogen III oxidase YP_003928586.1 681186 D 765962 CDS YP_003928587.1 308184454 9787403 682556..683845 1 NC_014560.1 COG0247 Fe-S oxidoreductase; putative anaerobic glycerol-3-phosphate dehydrogenase (G-3-P dehydrogenase) 683845 9787403 HPSJM_03390 Helicobacter pylori SJM180 putative anaerobic glycerol-3-phosphate dehydrogenase (G-3-P dehydrogenase) YP_003928587.1 682556 D 765962 CDS YP_003928588.1 308184455 9787404 683923..685956 1 NC_014560.1 COG4889 Predicted helicase; type II R-M system protein 685956 9787404 HPSJM_03395 Helicobacter pylori SJM180 type II R-M system protein YP_003928588.1 683923 D 765962 CDS YP_003928589.1 308184456 9787405 685910..688753 1 NC_014560.1 COG4889 Predicted helicase; hypothetical protein 688753 9787405 HPSJM_03400 Helicobacter pylori SJM180 hypothetical protein YP_003928589.1 685910 D 765962 CDS YP_003928590.1 308184457 9787406 688746..688904 1 NC_014560.1 hypothetical protein 688904 9787406 HPSJM_03405 Helicobacter pylori SJM180 hypothetical protein YP_003928590.1 688746 D 765962 CDS YP_003928591.1 308184458 9787407 689000..689812 1 NC_014560.1 outer membrane protein (omp14) 689812 9787407 HPSJM_03410 Helicobacter pylori SJM180 outer membrane protein (omp14) YP_003928591.1 689000 D 765962 CDS YP_003928592.1 308184459 9787408 689971..691143 1 NC_014560.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 691143 9787408 HPSJM_03415 Helicobacter pylori SJM180 aspartate aminotransferase YP_003928592.1 689971 D 765962 CDS YP_003928593.1 308184460 9787409 691345..692469 1 NC_014560.1 hypothetical protein 692469 9787409 HPSJM_03420 Helicobacter pylori SJM180 hypothetical protein YP_003928593.1 691345 D 765962 CDS YP_003928594.1 308184461 9787410 692469..692849 1 NC_014560.1 hypothetical protein 692849 9787410 HPSJM_03425 Helicobacter pylori SJM180 hypothetical protein YP_003928594.1 692469 D 765962 CDS YP_003928595.1 308184462 9787411 692972..693109 1 NC_014560.1 hypothetical protein 693109 9787411 HPSJM_03430 Helicobacter pylori SJM180 hypothetical protein YP_003928595.1 692972 D 765962 CDS YP_003928596.1 308184463 9787412 693152..694447 1 NC_014560.1 hypothetical protein 694447 9787412 HPSJM_03435 Helicobacter pylori SJM180 hypothetical protein YP_003928596.1 693152 D 765962 CDS YP_003928597.1 308184464 9787413 694444..695514 1 NC_014560.1 COG0582 Integrase; integrase-recombinase protein 695514 9787413 HPSJM_03440 Helicobacter pylori SJM180 integrase-recombinase protein YP_003928597.1 694444 D 765962 CDS YP_003928598.1 308184465 9787414 complement(695579..696085) 1 NC_014560.1 COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 696085 9787414 HPSJM_03445 Helicobacter pylori SJM180 methylated-DNA--protein-cysteine methyltransferase YP_003928598.1 695579 R 765962 CDS YP_003928599.1 308184466 9787415 complement(696089..696856) 1 NC_014560.1 COG0730 Predicted permeases; hypothetical protein 696856 9787415 HPSJM_03450 Helicobacter pylori SJM180 hypothetical protein YP_003928599.1 696089 R 765962 CDS YP_003928600.1 308184467 9787416 complement(696971..697918) 1 NC_014560.1 COG0673 Predicted dehydrogenases and related proteins; putative lipopolysaccharide biosynthesis protein 697918 9787416 HPSJM_03455 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928600.1 696971 R 765962 CDS YP_003928601.1 308184468 9787417 complement(697979..700345) 1 NC_014560.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 700345 9787417 HPSJM_03460 Helicobacter pylori SJM180 ribonucleotide-diphosphate reductase subunit alpha YP_003928601.1 697979 R 765962 CDS YP_003928602.1 308184469 9787418 complement(700517..701023) 1 NC_014560.1 hypothetical protein 701023 9787418 HPSJM_03465 Helicobacter pylori SJM180 hypothetical protein YP_003928602.1 700517 R 765962 CDS YP_003928603.1 308184470 9787419 complement(701063..701383) 1 NC_014560.1 hypothetical protein 701383 9787419 HPSJM_03470 Helicobacter pylori SJM180 hypothetical protein YP_003928603.1 701063 R 765962 CDS YP_003928604.1 308184471 9787420 complement(701584..702885) 1 NC_014560.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 702885 glmU 9787420 glmU Helicobacter pylori SJM180 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_003928604.1 701584 R 765962 CDS YP_003928605.1 308184472 9787421 702809..703714 1 NC_014560.1 COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 703714 fliP 9787421 fliP Helicobacter pylori SJM180 flagellar biosynthesis protein FliP YP_003928605.1 702809 D 765962 CDS YP_003928606.1 308184473 9787422 complement(703753..706056) 1 NC_014560.1 COG4772 Outer membrane receptor for Fe3+-dicitrate; Iron(III) dicitrate transport protein FecA; putative signal peptide 706056 9787422 HPSJM_03485 Helicobacter pylori SJM180 Iron(III) dicitrate transport protein FecA; putative signal peptide YP_003928606.1 703753 R 765962 CDS YP_003928607.1 308184474 9787423 complement(706306..708234) 1 NC_014560.1 COG0370 Fe2+ transport system protein B; iron(II) transport protein (feoB) 708234 9787423 HPSJM_03490 Helicobacter pylori SJM180 iron(II) transport protein (feoB) YP_003928607.1 706306 R 765962 CDS YP_003928608.1 308184475 9787424 708372..709184 1 NC_014560.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; hypothetical protein 709184 9787424 HPSJM_03495 Helicobacter pylori SJM180 hypothetical protein YP_003928608.1 708372 D 765962 CDS YP_003928609.1 308184476 9787425 709564..710739 1 NC_014560.1 COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 710739 9787425 HPSJM_03500 Helicobacter pylori SJM180 acetyl-CoA acetyltransferase YP_003928609.1 709564 D 765962 CDS YP_003928610.1 308184477 9787426 710750..711448 1 NC_014560.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA-transferase subunit A 711448 9787426 HPSJM_03505 Helicobacter pylori SJM180 succinyl-CoA-transferase subunit A YP_003928610.1 710750 D 765962 CDS YP_003928611.1 308184478 9787427 711445..712068 1 NC_014560.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA-transferase subunit B 712068 9787427 HPSJM_03510 Helicobacter pylori SJM180 succinyl-CoA-transferase subunit B YP_003928611.1 711445 D 765962 CDS YP_003928612.1 308184479 9787428 712087..713451 1 NC_014560.1 COG2031 Short chain fatty acids transporter; short-chain fatty acids transporter 713451 9787428 HPSJM_03515 Helicobacter pylori SJM180 short-chain fatty acids transporter YP_003928612.1 712087 D 765962 CDS YP_003928613.1 308184480 9787429 713580..714590 1 NC_014560.1 COG3528 Uncharacterized protein conserved in bacteria; putative Outer membrane protein 714590 9787429 HPSJM_03520 Helicobacter pylori SJM180 putative Outer membrane protein YP_003928613.1 713580 D 765962 CDS YP_003928614.1 308184481 9787430 714825..716966 1 NC_014560.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; hydantoin utilization protein A 716966 9787430 HPSJM_03525 Helicobacter pylori SJM180 hydantoin utilization protein A YP_003928614.1 714825 D 765962 CDS YP_003928615.1 308184482 9787431 716978..719275 1 NC_014560.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit; N-methyl hydantoinase 719275 9787431 HPSJM_03530 Helicobacter pylori SJM180 N-methyl hydantoinase YP_003928615.1 716978 D 765962 CDS YP_003928616.1 308184483 9787432 719292..719792 1 NC_014560.1 COG4647 Acetone carboxylase, gamma subunit; hypothetical protein 719792 9787432 HPSJM_03535 Helicobacter pylori SJM180 hypothetical protein YP_003928616.1 719292 D 765962 CDS YP_003928617.1 308184484 9787433 720127..721155 1 NC_014560.1 hypothetical protein 721155 9787433 HPSJM_03540 Helicobacter pylori SJM180 hypothetical protein YP_003928617.1 720127 D 765962 CDS YP_003928618.1 308184485 9787434 721148..721534 1 NC_014560.1 COG0818 Diacylglycerol kinase; diacylglycerol kinase 721534 9787434 HPSJM_03545 Helicobacter pylori SJM180 diacylglycerol kinase YP_003928618.1 721148 D 765962 CDS YP_003928619.1 308184486 9787435 721550..724051 1 NC_014560.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 724051 9787435 HPSJM_03550 Helicobacter pylori SJM180 DNA gyrase subunit A YP_003928619.1 721550 D 765962 CDS YP_003928620.1 308184487 9787436 724102..724524 1 NC_014560.1 hypothetical protein 724524 9787436 HPSJM_03555 Helicobacter pylori SJM180 hypothetical protein YP_003928620.1 724102 D 765962 CDS YP_003928621.1 308184488 9787437 724521..725666 1 NC_014560.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional activator of flagella proteins 725666 9787437 HPSJM_03560 Helicobacter pylori SJM180 transcriptional activator of flagella proteins YP_003928621.1 724521 D 765962 CDS YP_003928622.1 308184489 9787438 complement(726324..729149) 1 NC_014560.1 COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A 729149 uvrA 9787438 uvrA Helicobacter pylori SJM180 excinuclease ABC subunit A YP_003928622.1 726324 R 765962 CDS YP_003928623.1 308184490 9787439 729314..730135 1 NC_014560.1 outer membrane protein 730135 9787439 HPSJM_03570 Helicobacter pylori SJM180 outer membrane protein YP_003928623.1 729314 D 765962 CDS YP_003928624.1 308184491 9787440 730307..731233 1 NC_014560.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 731233 mraW 9787440 mraW Helicobacter pylori SJM180 S-adenosyl-methyltransferase MraW YP_003928624.1 730307 D 765962 CDS YP_003928625.1 308184492 9787441 731254..731598 1 NC_014560.1 hypothetical protein 731598 9787441 HPSJM_03580 Helicobacter pylori SJM180 hypothetical protein YP_003928625.1 731254 D 765962 CDS YP_003928626.1 308184493 9787442 731598..731783 1 NC_014560.1 hypothetical protein 731783 9787442 HPSJM_03585 Helicobacter pylori SJM180 hypothetical protein YP_003928626.1 731598 D 765962 CDS YP_003928627.1 308184494 9787443 732047..732949 1 NC_014560.1 COG1912 Uncharacterized conserved protein; hypothetical protein 732949 9787443 HPSJM_03590 Helicobacter pylori SJM180 hypothetical protein YP_003928627.1 732047 D 765962 CDS YP_003928628.1 308184495 9787444 733190..735175 1 NC_014560.1 putative outer membrane protein HomB 735175 9787444 HPSJM_03595 Helicobacter pylori SJM180 putative outer membrane protein HomB YP_003928628.1 733190 D 765962 CDS YP_003928629.1 308184496 9787445 735380..736600 1 NC_014560.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 736600 9787445 HPSJM_03600 Helicobacter pylori SJM180 hypothetical protein YP_003928629.1 735380 D 765962 CDS YP_003928630.1 308184497 9787446 736600..737304 1 NC_014560.1 COG3177 Uncharacterized conserved protein; hypothetical protein 737304 9787446 HPSJM_03605 Helicobacter pylori SJM180 hypothetical protein YP_003928630.1 736600 D 765962 CDS YP_003928631.1 308184498 9787447 complement(737316..738560) 1 NC_014560.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 738560 9787447 HPSJM_03610 Helicobacter pylori SJM180 RNA polymerase factor sigma-54 YP_003928631.1 737316 R 765962 CDS YP_003928632.1 308184499 9787448 complement(738563..739285) 1 NC_014560.1 COG1137 ABC-type (unclassified) transport system, ATPase component; ABC-type transport system, ATP binding protein 739285 9787448 HPSJM_03615 Helicobacter pylori SJM180 ABC-type transport system, ATP binding protein YP_003928632.1 738563 R 765962 CDS YP_003928633.1 308184500 9787449 complement(739298..739699) 1 NC_014560.1 COG0802 Predicted ATPase or kinase; hypothetical protein 739699 9787449 HPSJM_03620 Helicobacter pylori SJM180 hypothetical protein YP_003928633.1 739298 R 765962 CDS YP_003928634.1 308184501 9787450 complement(739696..741465) 1 NC_014560.1 COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 741465 9787450 HPSJM_03625 Helicobacter pylori SJM180 DNA polymerase III subunits gamma and tau YP_003928634.1 739696 R 765962 CDS YP_003928635.1 308184502 9787451 complement(741534..742166) 1 NC_014560.1 COG1279 Lysine efflux permease; hypothetical protein 742166 9787451 HPSJM_03630 Helicobacter pylori SJM180 hypothetical protein YP_003928635.1 741534 R 765962 CDS YP_003928636.1 308184503 9787452 742429..742851 1 NC_014560.1 hypothetical protein 742851 9787452 HPSJM_03635 Helicobacter pylori SJM180 hypothetical protein YP_003928636.1 742429 D 765962 CDS YP_003928637.1 308184504 9787453 742880..743341 1 NC_014560.1 hypothetical protein 743341 9787453 HPSJM_03640 Helicobacter pylori SJM180 hypothetical protein YP_003928637.1 742880 D 765962 CDS YP_003928638.1 308184505 9787454 743742..745586 1 NC_014560.1 outer membrane protein SabB/HopO 745586 9787454 HPSJM_03645 Helicobacter pylori SJM180 outer membrane protein SabB/HopO YP_003928638.1 743742 D 765962 CDS YP_003928639.1 308184506 9787455 complement(745725..746723) 1 NC_014560.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II 746723 9787455 HPSJM_03650 Helicobacter pylori SJM180 L-asparaginase II YP_003928639.1 745725 R 765962 CDS YP_003928640.1 308184507 9787456 746853..748184 1 NC_014560.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 748184 9787456 HPSJM_03655 Helicobacter pylori SJM180 anaerobic C4-dicarboxylate transporter YP_003928640.1 746853 D 765962 CDS YP_003928641.1 308184508 9787457 complement(748259..750223) 1 NC_014560.1 outer membrane protein SabA 750223 9787457 HPSJM_03660 Helicobacter pylori SJM180 outer membrane protein SabA YP_003928641.1 748259 R 765962 CDS YP_003928642.1 308184509 9787458 complement(750440..751357) 1 NC_014560.1 outer membrane protein 751357 9787458 HPSJM_03665 Helicobacter pylori SJM180 outer membrane protein YP_003928642.1 750440 R 765962 CDS YP_003928643.1 308184510 9787459 complement(751327..752313) 1 NC_014560.1 COG0042 tRNA-dihydrouridine synthase; putative transcriptional regulator 752313 9787459 HPSJM_03670 Helicobacter pylori SJM180 putative transcriptional regulator YP_003928643.1 751327 R 765962 CDS YP_003928644.1 308184511 9787460 complement(752405..753421) 1 NC_014560.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase 753421 9787460 HPSJM_03675 Helicobacter pylori SJM180 tRNA(Ile)-lysidine synthase YP_003928644.1 752405 R 765962 CDS YP_003928645.1 308184512 9787461 complement(753457..754524) 1 NC_014560.1 hypothetical protein 754524 9787461 HPSJM_03680 Helicobacter pylori SJM180 hypothetical protein YP_003928645.1 753457 R 765962 CDS YP_003928646.1 308184513 9787462 complement(754533..754838) 1 NC_014560.1 hypothetical protein 754838 9787462 HPSJM_03685 Helicobacter pylori SJM180 hypothetical protein YP_003928646.1 754533 R 765962 CDS YP_003928647.1 308184514 9787463 754771..754890 1 NC_014560.1 hypothetical protein 754890 9787463 HPSJM_03690 Helicobacter pylori SJM180 hypothetical protein YP_003928647.1 754771 D 765962 CDS YP_003928648.1 308184515 9787464 complement(754938..756650) 1 NC_014560.1 COG0699 Predicted GTPases (dynamin-related); hypothetical protein 756650 9787464 HPSJM_03695 Helicobacter pylori SJM180 hypothetical protein YP_003928648.1 754938 R 765962 CDS YP_003928649.1 308184516 9787465 complement(756647..756886) 1 NC_014560.1 hypothetical protein 756886 9787465 HPSJM_03700 Helicobacter pylori SJM180 hypothetical protein YP_003928649.1 756647 R 765962 CDS YP_003928650.1 308184517 9787466 complement(758419..758559) 1 NC_014560.1 hypothetical protein 758559 9787466 HPSJM_03715 Helicobacter pylori SJM180 hypothetical protein YP_003928650.1 758419 R 765962 CDS YP_003928651.1 308184518 9787467 complement(758613..759932) 1 NC_014560.1 COG0621 2-methylthioadenine synthetase; hypothetical protein 759932 9787467 HPSJM_03720 Helicobacter pylori SJM180 hypothetical protein YP_003928651.1 758613 R 765962 CDS YP_003928652.1 308184519 9787468 complement(759934..760395) 1 NC_014560.1 COG2236 Predicted phosphoribosyltransferases; putative nucleotide phosphoribosyltransferase 760395 9787468 HPSJM_03725 Helicobacter pylori SJM180 putative nucleotide phosphoribosyltransferase YP_003928652.1 759934 R 765962 CDS YP_003928653.1 308184520 9787469 complement(760404..761513) 1 NC_014560.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; putative aminotransferase 761513 9787469 HPSJM_03730 Helicobacter pylori SJM180 putative aminotransferase YP_003928653.1 760404 R 765962 CDS YP_003928654.1 308184521 9787470 761660..762136 1 NC_014560.1 COG1267 Phosphatidylglycerophosphatase A and related proteins; hypothetical protein 762136 9787470 HPSJM_03735 Helicobacter pylori SJM180 hypothetical protein YP_003928654.1 761660 D 765962 CDS YP_003928655.1 308184522 9787471 762214..763257 1 NC_014560.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 763257 ddl 9787471 ddl Helicobacter pylori SJM180 D-alanyl-alanine synthetase A YP_003928655.1 762214 D 765962 CDS YP_003928656.1 308184523 9787472 763257..763982 1 NC_014560.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-oxohepta-2, 4-dienoate hydrolase 763982 9787472 HPSJM_03745 Helicobacter pylori SJM180 2-hydroxy-6-oxohepta-2, 4-dienoate hydrolase YP_003928656.1 763257 D 765962 CDS YP_003928657.1 308184524 9787473 763969..765450 1 NC_014560.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase; D-alanyl-D-alanine-adding enzyme 765450 9787473 HPSJM_03750 Helicobacter pylori SJM180 D-alanyl-D-alanine-adding enzyme YP_003928657.1 763969 D 765962 CDS YP_003928658.1 308184525 9787474 765460..765945 1 NC_014560.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) family protein 765945 9787474 HPSJM_03755 Helicobacter pylori SJM180 histidine triad (HIT) family protein YP_003928658.1 765460 D 765962 CDS YP_003928659.1 308184526 9787475 766010..766966 1 NC_014560.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 766966 9787475 HPSJM_03760 Helicobacter pylori SJM180 ribose-phosphate pyrophosphokinase YP_003928659.1 766010 D 765962 CDS YP_003928660.1 308184527 9787477 complement(767027..768172) 1 NC_014560.1 COG0772 Bacterial cell division membrane protein; Rod shape-determining protein RodA; putative membrane protein 768172 9787477 HPSJM_03765 Helicobacter pylori SJM180 Rod shape-determining protein RodA; putative membrane protein YP_003928660.1 767027 R 765962 CDS YP_003928661.1 308184528 9787478 complement(768195..768749) 1 NC_014560.1 COG3597 Uncharacterized protein/domain associated with GTPases; hypothetical protein 768749 9787478 HPSJM_03770 Helicobacter pylori SJM180 hypothetical protein YP_003928661.1 768195 R 765962 CDS YP_003928662.1 308184529 9787479 complement(768953..769408) 1 NC_014560.1 COG3596 Predicted GTPase; hypothetical protein 769408 9787479 HPSJM_03775 Helicobacter pylori SJM180 hypothetical protein YP_003928662.1 768953 R 765962 CDS YP_003928663.1 308184530 9787480 769544..770527 1 NC_014560.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 770527 9787480 HPSJM_03780 Helicobacter pylori SJM180 hypothetical protein YP_003928663.1 769544 D 765962 CDS YP_003928664.1 308184531 9787481 770490..771737 1 NC_014560.1 hypothetical protein 771737 9787481 HPSJM_03785 Helicobacter pylori SJM180 hypothetical protein YP_003928664.1 770490 D 765962 CDS YP_003928665.1 308184532 9787482 771748..772929 1 NC_014560.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 772929 9787482 HPSJM_03790 Helicobacter pylori SJM180 tRNA (guanine-N(7)-)-methyltransferase YP_003928665.1 771748 D 765962 CDS YP_003928666.1 308184533 9787483 772926..773597 1 NC_014560.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; cell division protein 773597 9787483 HPSJM_03795 Helicobacter pylori SJM180 cell division protein YP_003928666.1 772926 D 765962 CDS YP_003928667.1 308184534 9787484 773584..774390 1 NC_014560.1 COG2177 Cell division protein; cell division membrane protein (ftsX) 774390 9787484 HPSJM_03800 Helicobacter pylori SJM180 cell division membrane protein (ftsX) YP_003928667.1 773584 D 765962 CDS YP_003928668.1 308184535 9787485 774383..775585 1 NC_014560.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 775585 9787485 HPSJM_03805 Helicobacter pylori SJM180 hypothetical protein YP_003928668.1 774383 D 765962 CDS YP_003928669.1 308184536 9787486 775679..776038 1 NC_014560.1 COG1334 Uncharacterized flagellar protein FlaG; flagellar protein FlaG 776038 9787486 HPSJM_03810 Helicobacter pylori SJM180 flagellar protein FlaG YP_003928669.1 775679 D 765962 CDS YP_003928670.1 308184537 9787487 776078..778135 1 NC_014560.1 COG1345 Flagellar capping protein; flagellar capping protein 778135 fliD 9787487 fliD Helicobacter pylori SJM180 flagellar capping protein YP_003928670.1 776078 D 765962 CDS YP_003928671.1 308184538 9787488 778177..778557 1 NC_014560.1 COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 778557 fliS 9787488 fliS Helicobacter pylori SJM180 flagellar protein FliS YP_003928671.1 778177 D 765962 CDS YP_003928672.1 308184539 9787489 778544..778783 1 NC_014560.1 hypothetical protein 778783 9787489 HPSJM_03825 Helicobacter pylori SJM180 hypothetical protein YP_003928672.1 778544 D 765962 CDS YP_003928673.1 308184540 9787490 778836..779543 1 NC_014560.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; hypothetical protein 779543 9787490 HPSJM_03830 Helicobacter pylori SJM180 hypothetical protein YP_003928673.1 778836 D 765962 CDS YP_003928674.1 308184541 9787491 779509..779655 1 NC_014560.1 hypothetical protein 779655 9787491 HPSJM_03835 Helicobacter pylori SJM180 hypothetical protein YP_003928674.1 779509 D 765962 CDS YP_003928675.1 308184542 9787492 779659..780537 1 NC_014560.1 COG0388 Predicted amidohydrolase; putative carbon-nitrogen hydrolase 780537 9787492 HPSJM_03840 Helicobacter pylori SJM180 putative carbon-nitrogen hydrolase YP_003928675.1 779659 D 765962 CDS YP_003928676.1 308184543 9787493 780662..781975 1 NC_014560.1 COG2056 Predicted permease; permease/na-h antiporter 781975 9787493 HPSJM_03845 Helicobacter pylori SJM180 permease/na-h antiporter YP_003928676.1 780662 D 765962 CDS YP_003928677.1 308184544 9787494 782038..783291 1 NC_014560.1 COG0534 Na+-driven multidrug efflux pump; Multidrug efflux protein MatE; putative membrane protein 783291 9787494 HPSJM_03850 Helicobacter pylori SJM180 Multidrug efflux protein MatE; putative membrane protein YP_003928677.1 782038 D 765962 CDS YP_003928678.1 308184545 9787495 complement(783292..784815) 1 NC_014560.1 COG1418 Predicted HD superfamily hydrolase; phosphodiesterase 784815 9787495 HPSJM_03855 Helicobacter pylori SJM180 phosphodiesterase YP_003928678.1 783292 R 765962 CDS YP_003928679.1 308184546 9787496 complement(784781..785428) 1 NC_014560.1 COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 785428 9787496 HPSJM_03860 Helicobacter pylori SJM180 hypothetical protein YP_003928679.1 784781 R 765962 CDS YP_003928680.1 308184547 9787497 785553..786110 1 NC_014560.1 COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain; hypothetical protein 786110 9787497 HPSJM_03865 Helicobacter pylori SJM180 hypothetical protein YP_003928680.1 785553 D 765962 CDS YP_003928681.1 308184548 9787498 786116..786997 1 NC_014560.1 COG0552 Signal recognition particle GTPase; cell division protein (ftsY) 786997 9787498 HPSJM_03870 Helicobacter pylori SJM180 cell division protein (ftsY) YP_003928681.1 786116 D 765962 CDS YP_003928682.1 308184549 9787499 complement(787253..787567) 1 NC_014560.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 787567 9787499 HPSJM_03875 Helicobacter pylori SJM180 hypothetical protein YP_003928682.1 787253 R 765962 CDS YP_003928683.1 308184550 9787500 complement(787626..788693) 1 NC_014560.1 hypothetical protein 788693 9787500 HPSJM_03880 Helicobacter pylori SJM180 hypothetical protein YP_003928683.1 787626 R 765962 CDS YP_003928684.1 308184551 9787501 complement(788704..790197) 1 NC_014560.1 hypothetical protein 790197 9787501 HPSJM_03885 Helicobacter pylori SJM180 hypothetical protein YP_003928684.1 788704 R 765962 CDS YP_003928685.1 308184552 9787502 790214..790333 1 NC_014560.1 hypothetical protein 790333 9787502 HPSJM_03890 Helicobacter pylori SJM180 hypothetical protein YP_003928685.1 790214 D 765962 CDS YP_003928686.1 308184553 9787503 complement(790501..791466) 1 NC_014560.1 COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 791466 moaA 9787503 moaA Helicobacter pylori SJM180 molybdenum cofactor biosynthesis protein A YP_003928686.1 790501 R 765962 CDS YP_003928687.1 308184554 9787504 791554..792159 1 NC_014560.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 792159 9787504 HPSJM_03900 Helicobacter pylori SJM180 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003928687.1 791554 D 765962 CDS YP_003928688.1 308184555 9787505 792152..793228 1 NC_014560.1 COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 793228 flhB 9787505 flhB Helicobacter pylori SJM180 flagellar biosynthesis protein FlhB YP_003928688.1 792152 D 765962 CDS YP_003928689.1 308184556 9787506 complement(793327..794064) 1 NC_014560.1 hypothetical protein 794064 9787506 HPSJM_03910 Helicobacter pylori SJM180 hypothetical protein YP_003928689.1 793327 R 765962 CDS YP_003928690.1 308184557 9787507 complement(794083..795399) 1 NC_014560.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 795399 9787507 HPSJM_03915 Helicobacter pylori SJM180 N-acetylmuramoyl-L-alanine amidase YP_003928690.1 794083 R 765962 CDS YP_003928691.1 308184558 9787508 complement(795406..796497) 1 NC_014560.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 796497 9787508 HPSJM_03920 Helicobacter pylori SJM180 2-nitropropane dioxygenase YP_003928691.1 795406 R 765962 CDS YP_003928692.1 308184559 9787509 complement(796514..797722) 1 NC_014560.1 COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 797722 9787509 HPSJM_03925 Helicobacter pylori SJM180 tyrosyl-tRNA synthetase YP_003928692.1 796514 R 765962 CDS YP_003928693.1 308184560 9787510 complement(797746..800073) 1 NC_014560.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; penta-phosphate guanosine-3'-pyrophosphohydrolase 800073 9787510 HPSJM_03930 Helicobacter pylori SJM180 penta-phosphate guanosine-3'-pyrophosphohydrolase YP_003928693.1 797746 R 765962 CDS YP_003928694.1 308184561 9787511 complement(800060..800284) 1 NC_014560.1 COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 800284 9787511 HPSJM_03935 Helicobacter pylori SJM180 DNA-directed RNA polymerase subunit omega YP_003928694.1 800060 R 765962 CDS YP_003928695.1 308184562 9787512 complement(800326..801048) 1 NC_014560.1 COG0528 Uridylate kinase; uridylate kinase 801048 pyrH 9787512 pyrH Helicobacter pylori SJM180 uridylate kinase YP_003928695.1 800326 R 765962 CDS YP_003928696.1 308184563 9787513 complement(801158..801841) 1 NC_014560.1 COG1427 Predicted periplasmic solute-binding protein; hypothetical protein 801841 9787513 HPSJM_03945 Helicobacter pylori SJM180 hypothetical protein YP_003928696.1 801158 R 765962 CDS YP_003928697.1 308184564 9787514 801972..804530 1 NC_014560.1 COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 804530 9787514 HPSJM_03950 Helicobacter pylori SJM180 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_003928697.1 801972 D 765962 CDS YP_003928698.1 308184565 9787515 804606..804872 1 NC_014560.1 hypothetical protein 804872 9787515 HPSJM_03955 Helicobacter pylori SJM180 hypothetical protein YP_003928698.1 804606 D 765962 CDS YP_003928699.1 308184566 9787516 805139..806428 1 NC_014560.1 hypothetical protein 806428 9787516 HPSJM_03960 Helicobacter pylori SJM180 hypothetical protein YP_003928699.1 805139 D 765962 CDS YP_003928700.1 308184567 9787517 806522..807889 1 NC_014560.1 outer membrane protein 807889 9787517 HPSJM_03965 Helicobacter pylori SJM180 outer membrane protein YP_003928700.1 806522 D 765962 CDS YP_003928701.1 308184568 9787518 complement(807896..808423) 1 NC_014560.1 hypothetical protein 808423 9787518 HPSJM_03970 Helicobacter pylori SJM180 hypothetical protein YP_003928701.1 807896 R 765962 CDS YP_003928702.1 308184569 9787519 complement(808916..809470) 1 NC_014560.1 COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein 809470 lolA 9787519 lolA Helicobacter pylori SJM180 outer-membrane lipoprotein carrier protein YP_003928702.1 808916 R 765962 CDS YP_003928703.1 308184570 9787520 809616..812213 1 NC_014560.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 812213 9787520 HPSJM_03980 Helicobacter pylori SJM180 preprotein translocase subunit SecA YP_003928703.1 809616 D 765962 CDS YP_003928704.1 308184571 9787521 812203..813435 1 NC_014560.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; lipoprotein release system transmembrane protein 813435 9787521 HPSJM_03985 Helicobacter pylori SJM180 lipoprotein release system transmembrane protein YP_003928704.1 812203 D 765962 CDS YP_003928705.1 308184572 9787522 813717..815216 1 NC_014560.1 outer membrane protein 815216 9787522 HPSJM_03990 Helicobacter pylori SJM180 outer membrane protein YP_003928705.1 813717 D 765962 CDS YP_003928706.1 308184573 9787523 complement(815483..816232) 1 NC_014560.1 hypothetical protein 816232 9787523 HPSJM_03995 Helicobacter pylori SJM180 hypothetical protein YP_003928706.1 815483 R 765962 CDS YP_003928707.1 308184574 9787524 complement(816219..817436) 1 NC_014560.1 COG0270 Site-specific DNA methylase; site-specific DNA methylase 817436 9787524 HPSJM_04000 Helicobacter pylori SJM180 site-specific DNA methylase YP_003928707.1 816219 R 765962 CDS YP_003928708.1 308184575 9787525 complement(817471..819531) 1 NC_014560.1 COG2217 Cation transport ATPase; cadmium-transporting ATPase 819531 9787525 HPSJM_04005 Helicobacter pylori SJM180 cadmium-transporting ATPase YP_003928708.1 817471 R 765962 CDS YP_003928709.1 308184576 9787526 complement(819556..821076) 1 NC_014560.1 COG0606 Predicted ATPase with chaperone activity; Mg chelatase-related protein; putative ComM protein 821076 9787526 HPSJM_04010 Helicobacter pylori SJM180 Mg chelatase-related protein; putative ComM protein YP_003928709.1 819556 R 765962 CDS YP_003928710.1 308184577 9787527 complement(821082..821606) 1 NC_014560.1 COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 821606 def 9787527 def Helicobacter pylori SJM180 peptide deformylase YP_003928710.1 821082 R 765962 CDS YP_003928711.1 308184578 9787528 complement(821611..822198) 1 NC_014560.1 COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 822198 clpP 9787528 clpP Helicobacter pylori SJM180 ATP-dependent Clp protease proteolytic subunit YP_003928711.1 821611 R 765962 CDS YP_003928712.1 308184579 9787529 complement(822219..823574) 1 NC_014560.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 823574 tig 9787529 tig Helicobacter pylori SJM180 trigger factor YP_003928712.1 822219 R 765962 CDS YP_003928713.1 308184580 9787530 complement(823687..824523) 1 NC_014560.1 outer membrane protein HorG 824523 9787530 HPSJM_04030 Helicobacter pylori SJM180 outer membrane protein HorG YP_003928713.1 823687 R 765962 CDS YP_003928714.1 308184581 9787531 complement(824545..825327) 1 NC_014560.1 flagellar sheath adhesin 825327 9787531 HPSJM_04035 Helicobacter pylori SJM180 flagellar sheath adhesin YP_003928714.1 824545 R 765962 CDS YP_003928715.1 308184582 9787532 complement(825446..825922) 1 NC_014560.1 COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 825922 moaC 9787532 moaC Helicobacter pylori SJM180 molybdenum cofactor biosynthesis protein MoaC YP_003928715.1 825446 R 765962 CDS YP_003928716.1 308184583 9787533 complement(825932..826462) 1 NC_014560.1 COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 826462 mogA 9787533 mogA Helicobacter pylori SJM180 molybdenum cofactor biosynthesis protein MogA YP_003928716.1 825932 R 765962 CDS YP_003928717.1 308184584 9787534 complement(826475..826912) 1 NC_014560.1 COG0314 Molybdopterin converting factor, large subunit; molybdopterin converting factor, subunit 2 826912 9787534 HPSJM_04050 Helicobacter pylori SJM180 molybdopterin converting factor, subunit 2 YP_003928717.1 826475 R 765962 CDS YP_003928718.1 308184585 9787535 complement(826913..827134) 1 NC_014560.1 COG1977 Molybdopterin converting factor, small subunit; putative molybdopterin converting factor, subunit 1 827134 9787535 HPSJM_04055 Helicobacter pylori SJM180 putative molybdopterin converting factor, subunit 1 YP_003928718.1 826913 R 765962 CDS YP_003928719.1 308184586 9787536 complement(827209..827787) 1 NC_014560.1 COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 827787 ribA 9787536 ribA Helicobacter pylori SJM180 GTP cyclohydrolase II YP_003928719.1 827209 R 765962 CDS YP_003928720.1 308184587 9787537 complement(827877..828716) 1 NC_014560.1 hypothetical protein 828716 9787537 HPSJM_04065 Helicobacter pylori SJM180 hypothetical protein YP_003928720.1 827877 R 765962 CDS YP_003928721.1 308184588 9787538 complement(828803..829837) 1 NC_014560.1 COG0108 3, 4-dihydroxy-2-butanone 4-phosphate synthase; bifunctional 3, 4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 829837 9787538 HPSJM_04070 Helicobacter pylori SJM180 bifunctional 3, 4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_003928721.1 828803 R 765962 CDS YP_003928722.1 308184589 9787539 829895..830011 1 NC_014560.1 hypothetical protein 830011 9787539 HPSJM_04075 Helicobacter pylori SJM180 hypothetical protein YP_003928722.1 829895 D 765962 CDS YP_003928723.1 308184590 9787540 complement(830008..830862) 1 NC_014560.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein 830862 9787540 HPSJM_04080 Helicobacter pylori SJM180 lipooligosaccharide 5G8 epitope biosynthesis-associated protein YP_003928723.1 830008 R 765962 CDS YP_003928724.1 308184591 9787541 830944..831564 1 NC_014560.1 COG1451 Predicted metal-dependent hydrolase; putative hydrolase 831564 9787541 HPSJM_04085 Helicobacter pylori SJM180 putative hydrolase YP_003928724.1 830944 D 765962 CDS YP_003928725.1 308184592 9787542 complement(831575..833953) 1 NC_014560.1 COG4771 Outer membrane receptor for ferrienterochelin and colicins; iron (III) dicitrate transport protein 833953 9787542 HPSJM_04090 Helicobacter pylori SJM180 iron (III) dicitrate transport protein YP_003928725.1 831575 R 765962 CDS YP_003928726.1 308184593 9787543 complement(834162..834521) 1 NC_014560.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase 834521 acpS 9787543 acpS Helicobacter pylori SJM180 4'-phosphopantetheinyl transferase YP_003928726.1 834162 R 765962 CDS YP_003928727.1 308184594 9787544 complement(834528..835079) 1 NC_014560.1 COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 835079 fliL 9787544 fliL Helicobacter pylori SJM180 flagellar basal body-associated protein FliL YP_003928727.1 834528 R 765962 CDS YP_003928728.1 308184595 9787545 complement(835088..835690) 1 NC_014560.1 COG0742 N6-adenine-specific methylase; hypothetical protein 835690 9787545 HPSJM_04105 Helicobacter pylori SJM180 hypothetical protein YP_003928728.1 835088 R 765962 CDS YP_003928729.1 308184596 9787546 complement(835669..835995) 1 NC_014560.1 hypothetical protein 835995 9787546 HPSJM_04110 Helicobacter pylori SJM180 hypothetical protein YP_003928729.1 835669 R 765962 CDS YP_003928730.1 308184597 9787547 complement(836430..837437) 1 NC_014560.1 COG1565 Uncharacterized conserved protein; hypothetical protein 837437 9787547 HPSJM_04115 Helicobacter pylori SJM180 hypothetical protein YP_003928730.1 836430 R 765962 CDS YP_003928731.1 308184598 9787548 837569..838186 1 NC_014560.1 COG0491 Zn-dependent hydrolases, including glyoxylases; hypothetical protein 838186 9787548 HPSJM_04120 Helicobacter pylori SJM180 hypothetical protein YP_003928731.1 837569 D 765962 CDS YP_003928732.1 308184599 9787549 838187..838954 1 NC_014560.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamin biosynthesis protein (thiF) 838954 9787549 HPSJM_04125 Helicobacter pylori SJM180 thiamin biosynthesis protein (thiF) YP_003928732.1 838187 D 765962 CDS YP_003928733.1 308184600 9787550 838970..839743 1 NC_014560.1 COG1291 Flagellar motor component; flagellar motor protein MotA 839743 9787550 HPSJM_04130 Helicobacter pylori SJM180 flagellar motor protein MotA YP_003928733.1 838970 D 765962 CDS YP_003928734.1 308184601 9787551 839746..840519 1 NC_014560.1 COG1360 Flagellar motor protein; flagellar motor protein MotB 840519 motB 9787551 motB Helicobacter pylori SJM180 flagellar motor protein MotB YP_003928734.1 839746 D 765962 CDS YP_003928735.1 308184602 9787552 840525..840962 1 NC_014560.1 hypothetical protein 840962 9787552 HPSJM_04140 Helicobacter pylori SJM180 hypothetical protein YP_003928735.1 840525 D 765962 CDS YP_003928736.1 308184603 9787553 841076..842737 1 NC_014560.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; osmoprotection protein (proWX) 842737 9787553 HPSJM_04145 Helicobacter pylori SJM180 osmoprotection protein (proWX) YP_003928736.1 841076 D 765962 CDS YP_003928737.1 308184604 9787554 842741..843391 1 NC_014560.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; osmoprotection ATP-binding protein 843391 9787554 HPSJM_04150 Helicobacter pylori SJM180 osmoprotection ATP-binding protein YP_003928737.1 842741 D 765962 CDS YP_003928738.1 308184605 9787555 843565..844026 1 NC_014560.1 COG0018 Arginyl-tRNA synthetase; hypothetical protein 844026 9787555 HPSJM_04155 Helicobacter pylori SJM180 hypothetical protein YP_003928738.1 843565 D 765962 CDS YP_003928739.1 308184606 9787556 844027..845811 1 NC_014560.1 COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 845811 uvrC 9787556 uvrC Helicobacter pylori SJM180 excinuclease ABC subunit C YP_003928739.1 844027 D 765962 CDS YP_003928740.1 308184607 9787557 845822..847087 1 NC_014560.1 COG0460 Homoserine dehydrogenase; homoserine dehydrogenase 847087 9787557 HPSJM_04165 Helicobacter pylori SJM180 homoserine dehydrogenase YP_003928740.1 845822 D 765962 CDS YP_003928741.1 308184608 9787558 847087..847431 1 NC_014560.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 847431 9787558 HPSJM_04170 Helicobacter pylori SJM180 hypothetical protein YP_003928741.1 847087 D 765962 CDS YP_003928742.1 308184609 9787559 847520..847840 1 NC_014560.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 847840 9787559 HPSJM_04175 Helicobacter pylori SJM180 thioredoxin YP_003928742.1 847520 D 765962 CDS YP_003928743.1 308184610 9787560 847846..848781 1 NC_014560.1 COG0492 Thioredoxin reductase; thioredoxin reductase 848781 9787560 HPSJM_04180 Helicobacter pylori SJM180 thioredoxin reductase YP_003928743.1 847846 D 765962 CDS YP_003928744.1 308184611 9787561 complement(848825..848965) 1 NC_014560.1 hypothetical protein 848965 9787561 HPSJM_04185 Helicobacter pylori SJM180 hypothetical protein YP_003928744.1 848825 R 765962 CDS YP_003928745.1 308184612 9787562 848980..849099 1 NC_014560.1 hypothetical protein 849099 9787562 HPSJM_04190 Helicobacter pylori SJM180 hypothetical protein YP_003928745.1 848980 D 765962 CDS YP_003928746.1 308184613 9787563 849139..849960 1 NC_014560.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B) 849960 9787563 HPSJM_04195 Helicobacter pylori SJM180 lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B) YP_003928746.1 849139 D 765962 CDS YP_003928747.1 308184614 9787564 complement(850176..850424) 1 NC_014560.1 COG0724 RNA-binding proteins (RRM domain); Nucleotide binding protein 850424 9787564 HPSJM_04200 Helicobacter pylori SJM180 Nucleotide binding protein YP_003928747.1 850176 R 765962 CDS YP_003928748.1 308184615 9787565 complement(850750..851430) 1 NC_014560.1 COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A 851430 9787565 HPSJM_04205 Helicobacter pylori SJM180 F0F1 ATP synthase subunit A YP_003928748.1 850750 R 765962 CDS YP_003928749.1 308184616 9787566 complement(851552..852997) 1 NC_014560.1 COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase 852997 9787566 HPSJM_04210 Helicobacter pylori SJM180 inosine 5'-monophosphate dehydrogenase YP_003928749.1 851552 R 765962 CDS YP_003928750.1 308184617 9787567 complement(853007..854368) 1 NC_014560.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; aspartyl/glutamyl-tRNA amidotransferase subunit A 854368 gatA 9787567 gatA Helicobacter pylori SJM180 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_003928750.1 853007 R 765962 CDS YP_003928751.1 308184618 9787568 complement(854427..855017) 1 NC_014560.1 COG0237 Dephospho-CoA kinase; dephospho-CoA kinase 855017 coaE 9787568 coaE Helicobacter pylori SJM180 dephospho-CoA kinase YP_003928751.1 854427 R 765962 CDS YP_003928752.1 308184619 9787569 complement(855019..855807) 1 NC_014560.1 COG0421 Spermidine synthase; spermidine synthase 855807 speE 9787569 speE Helicobacter pylori SJM180 spermidine synthase YP_003928752.1 855019 R 765962 CDS YP_003928753.1 308184620 9787570 complement(855892..856779) 1 NC_014560.1 hypothetical protein 856779 9787570 HPSJM_04230 Helicobacter pylori SJM180 hypothetical protein YP_003928753.1 855892 R 765962 CDS YP_003928754.1 308184621 9787571 856856..858244 1 NC_014560.1 COG1160 Predicted GTPases; GTP-binding protein EngA 858244 engA 9787571 engA Helicobacter pylori SJM180 GTP-binding protein EngA YP_003928754.1 856856 D 765962 CDS YP_003928755.1 308184622 9787572 858384..858668 1 NC_014560.1 COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 858668 9787572 HPSJM_04240 Helicobacter pylori SJM180 DNA-binding protein HU YP_003928755.1 858384 D 765962 CDS YP_003928756.1 308184623 9787574 complement(858908..859027) 1 NC_014560.1 hypothetical protein 859027 9787574 HPSJM_04250 Helicobacter pylori SJM180 hypothetical protein YP_003928756.1 858908 R 765962 CDS YP_003928757.1 308184624 9787575 complement(859167..859259) 1 NC_014560.1 hypothetical protein 859259 9787575 HPSJM_04255 Helicobacter pylori SJM180 hypothetical protein YP_003928757.1 859167 R 765962 CDS YP_003928758.1 308184625 9787576 859381..859986 1 NC_014560.1 COG3018 Uncharacterized protein conserved in bacteria; hypothetical protein 859986 9787576 HPSJM_04260 Helicobacter pylori SJM180 hypothetical protein YP_003928758.1 859381 D 765962 CDS YP_003928759.1 308184626 9787577 860005..860622 1 NC_014560.1 hypothetical protein 860622 9787577 HPSJM_04265 Helicobacter pylori SJM180 hypothetical protein YP_003928759.1 860005 D 765962 CDS YP_003928760.1 308184627 9787578 860619..862382 1 NC_014560.1 COG2067 Long-chain fatty acid transport protein; putative Outer membrane protein 862382 9787578 HPSJM_04270 Helicobacter pylori SJM180 putative Outer membrane protein YP_003928760.1 860619 D 765962 CDS YP_003928761.1 308184628 9787579 862386..863387 1 NC_014560.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases; UDP-GlcNAc C6 dehydratase/C5 epimerase 863387 9787579 HPSJM_04275 Helicobacter pylori SJM180 UDP-GlcNAc C6 dehydratase/C5 epimerase YP_003928761.1 862386 D 765962 CDS YP_003928762.1 308184629 9787580 863384..864661 1 NC_014560.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 864661 9787580 HPSJM_04280 Helicobacter pylori SJM180 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_003928762.1 863384 D 765962 CDS YP_003928763.1 308184630 9787581 864661..865398 1 NC_014560.1 hypothetical protein 865398 9787581 HPSJM_04285 Helicobacter pylori SJM180 hypothetical protein YP_003928763.1 864661 D 765962 CDS YP_003928764.1 308184631 9787582 complement(865423..866082) 1 NC_014560.1 COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 866082 thiE 9787582 thiE Helicobacter pylori SJM180 thiamine-phosphate pyrophosphorylase YP_003928764.1 865423 R 765962 CDS YP_003928765.1 308184632 9787583 complement(866075..866884) 1 NC_014560.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; thiamine biosynthesis protein (thi) 866884 9787583 HPSJM_04295 Helicobacter pylori SJM180 thiamine biosynthesis protein (thi) YP_003928765.1 866075 R 765962 CDS YP_003928766.1 308184633 9787584 complement(866881..867660) 1 NC_014560.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase 867660 9787584 HPSJM_04300 Helicobacter pylori SJM180 hydroxyethylthiazole kinase YP_003928766.1 866881 R 765962 CDS YP_003928767.1 308184634 9787585 complement(867752..870751) 1 NC_014560.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein 870751 9787585 HPSJM_04305 Helicobacter pylori SJM180 type I restriction enzyme R protein YP_003928767.1 867752 R 765962 CDS YP_003928768.1 308184635 9787586 complement(870923..871534) 1 NC_014560.1 COG0732 Restriction endonuclease S subunits; anti-codon nuclease masking agent (prrB) 871534 9787586 HPSJM_04310 Helicobacter pylori SJM180 anti-codon nuclease masking agent (prrB) YP_003928768.1 870923 R 765962 CDS YP_003928769.1 308184636 9787587 873297..873983 1 NC_014560.1 COG0671 Membrane-associated phospholipid phosphatase; integral membrane protein 873983 9787587 HPSJM_04325 Helicobacter pylori SJM180 integral membrane protein YP_003928769.1 873297 D 765962 CDS YP_003928770.1 308184637 9787588 complement(874006..874962) 1 NC_014560.1 COG2958 Uncharacterized protein conserved in bacteria; Excinuclease ATPase subunit 874962 9787588 HPSJM_04330 Helicobacter pylori SJM180 Excinuclease ATPase subunit YP_003928770.1 874006 R 765962 CDS YP_003928771.1 308184638 9787589 complement(874959..876560) 1 NC_014560.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 876560 9787589 HPSJM_04335 Helicobacter pylori SJM180 ABC transporter, ATP-binding protein YP_003928771.1 874959 R 765962 CDS YP_003928772.1 308184639 9787590 876763..877740 1 NC_014560.1 COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 877740 9787590 HPSJM_04340 Helicobacter pylori SJM180 guanosine 5'-monophosphate oxidoreductase YP_003928772.1 876763 D 765962 CDS YP_003928773.1 308184640 9787591 complement(877795..877932) 1 NC_014560.1 hypothetical protein 877932 9787591 HPSJM_04345 Helicobacter pylori SJM180 hypothetical protein YP_003928773.1 877795 R 765962 CDS YP_003928774.1 308184641 9787592 complement(877904..878482) 1 NC_014560.1 COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 878482 9787592 HPSJM_04350 Helicobacter pylori SJM180 phosphoheptose isomerase YP_003928774.1 877904 R 765962 CDS YP_003928775.1 308184642 9787593 complement(878475..879866) 1 NC_014560.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; ADP-heptose synthase 879866 9787593 HPSJM_04355 Helicobacter pylori SJM180 ADP-heptose synthase YP_003928775.1 878475 R 765962 CDS YP_003928776.1 308184643 9787594 complement(879863..880855) 1 NC_014560.1 COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-glyceromanno-heptose 6-epimerase 880855 9787594 HPSJM_04360 Helicobacter pylori SJM180 ADP-glyceromanno-heptose 6-epimerase YP_003928776.1 879863 R 765962 CDS YP_003928777.1 308184644 9787595 complement(880864..881388) 1 NC_014560.1 COG0241 Histidinol phosphatase and related phosphatases; hypothetical protein 881388 9787595 HPSJM_04365 Helicobacter pylori SJM180 hypothetical protein YP_003928777.1 880864 R 765962 CDS YP_003928778.1 308184645 9787596 complement(881375..882133) 1 NC_014560.1 COG2836 Uncharacterized conserved protein; hypothetical protein 882133 9787596 HPSJM_04370 Helicobacter pylori SJM180 hypothetical protein YP_003928778.1 881375 R 765962 CDS YP_003928779.1 308184646 9787597 complement(882124..882795) 1 NC_014560.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor; pantothenate kinase 882795 9787597 HPSJM_04375 Helicobacter pylori SJM180 pantothenate kinase YP_003928779.1 882124 R 765962 CDS YP_003928780.1 308184647 9787598 complement(882800..884425) 1 NC_014560.1 hypothetical protein 884425 9787598 HPSJM_04380 Helicobacter pylori SJM180 hypothetical protein YP_003928780.1 882800 R 765962 CDS YP_003928781.1 308184648 9787599 complement(884430..885086) 1 NC_014560.1 hypothetical protein 885086 9787599 HPSJM_04385 Helicobacter pylori SJM180 hypothetical protein YP_003928781.1 884430 R 765962 CDS YP_003928782.1 308184649 9787600 complement(885083..885520) 1 NC_014560.1 COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 885520 dut 9787600 dut Helicobacter pylori SJM180 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_003928782.1 885083 R 765962 CDS YP_003928783.1 308184650 9787601 complement(885510..886004) 1 NC_014560.1 COG0782 Transcription elongation factor; transcription elongation factor GreA 886004 greA 9787601 greA Helicobacter pylori SJM180 transcription elongation factor GreA YP_003928783.1 885510 R 765962 CDS YP_003928784.1 308184651 9787602 complement(886045..887127) 1 NC_014560.1 COG0763 Lipid A disaccharide synthetase; ipid-A-disaccharide synthase 887127 9787602 HPSJM_04400 Helicobacter pylori SJM180 ipid-A-disaccharide synthase YP_003928784.1 886045 R 765962 CDS YP_003928785.1 308184652 9787603 complement(887127..887588) 1 NC_014560.1 hypothetical protein 887588 9787603 HPSJM_04405 Helicobacter pylori SJM180 hypothetical protein YP_003928785.1 887127 R 765962 CDS YP_003928786.1 308184653 9787604 complement(887595..887948) 1 NC_014560.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 887948 hypA 9787604 hypA Helicobacter pylori SJM180 hydrogenase nickel incorporation protein YP_003928786.1 887595 R 765962 CDS YP_003928787.1 308184654 9787605 complement(888007..890163) 1 NC_014560.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 890163 flgE 9787605 flgE Helicobacter pylori SJM180 flagellar hook protein FlgE YP_003928787.1 888007 R 765962 CDS YP_003928788.1 308184655 9787606 complement(890376..891110) 1 NC_014560.1 COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 891110 9787606 HPSJM_04420 Helicobacter pylori SJM180 CDP-diacylglycerol pyrophosphatase YP_003928788.1 890376 R 765962 CDS YP_003928789.1 308184656 9787607 891462..891791 1 NC_014560.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; alkylphosphonate uptake protein 891791 9787607 HPSJM_04425 Helicobacter pylori SJM180 alkylphosphonate uptake protein YP_003928789.1 891462 D 765962 CDS YP_003928790.1 308184657 9787608 complement(891843..892058) 1 NC_014560.1 hypothetical protein 892058 9787608 HPSJM_04430 Helicobacter pylori SJM180 hypothetical protein YP_003928790.1 891843 R 765962 CDS YP_003928791.1 308184658 9787609 complement(892143..893018) 1 NC_014560.1 hypothetical protein 893018 9787609 HPSJM_04435 Helicobacter pylori SJM180 hypothetical protein YP_003928791.1 892143 R 765962 CDS YP_003928792.1 308184659 9787610 complement(893163..894680) 1 NC_014560.1 COG0753 Catalase; catalase 894680 9787610 HPSJM_04440 Helicobacter pylori SJM180 catalase YP_003928792.1 893163 R 765962 CDS YP_003928793.1 308184660 9787611 895001..897376 1 NC_014560.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 897376 9787611 HPSJM_04445 Helicobacter pylori SJM180 iron-regulated outer membrane protein YP_003928793.1 895001 D 765962 CDS YP_003928794.1 308184661 9787612 complement(897377..897850) 1 NC_014560.1 COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase 897850 ruvC 9787612 ruvC Helicobacter pylori SJM180 Holliday junction resolvase YP_003928794.1 897377 R 765962 CDS YP_003928795.1 308184662 9787613 897980..898711 1 NC_014560.1 COG1432 Uncharacterized conserved protein; hypothetical protein 898711 9787613 HPSJM_04455 Helicobacter pylori SJM180 hypothetical protein YP_003928795.1 897980 D 765962 CDS YP_003928796.1 308184663 9787614 complement(899765..900331) 1 NC_014560.1 hypothetical protein 900331 9787614 HPSJM_04460 Helicobacter pylori SJM180 hypothetical protein YP_003928796.1 899765 R 765962 CDS YP_003928797.1 308184664 9787615 complement(900566..901117) 1 NC_014560.1 COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA 901117 ruvA 9787615 ruvA Helicobacter pylori SJM180 Holliday junction DNA helicase RuvA YP_003928797.1 900566 R 765962 CDS YP_003928798.1 308184665 9787616 complement(901143..902981) 1 NC_014560.1 hypothetical protein 902981 9787616 HPSJM_04470 Helicobacter pylori SJM180 hypothetical protein YP_003928798.1 901143 R 765962 CDS YP_003928799.1 308184666 9787617 903074..904534 1 NC_014560.1 COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor MviN 904534 9787617 HPSJM_04475 Helicobacter pylori SJM180 virulence factor MviN YP_003928799.1 903074 D 765962 CDS YP_003928800.1 308184667 9787618 904535..905932 1 NC_014560.1 COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 905932 cysS 9787618 cysS Helicobacter pylori SJM180 cysteinyl-tRNA synthetase YP_003928800.1 904535 D 765962 CDS YP_003928801.1 308184668 9787619 906219..910103 1 NC_014560.1 vacuolating cytotoxin A 910103 9787619 HPSJM_04485 Helicobacter pylori SJM180 vacuolating cytotoxin A YP_003928801.1 906219 D 765962 CDS YP_003928802.1 308184669 9787620 complement(910221..911231) 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein 911231 9787620 HPSJM_04490 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928802.1 910221 R 765962 CDS YP_003928803.1 308184670 9787621 complement(911404..912171) 1 NC_014560.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; IRON(III) dicitrate transport system ATP-binding protein 912171 9787621 HPSJM_04495 Helicobacter pylori SJM180 IRON(III) dicitrate transport system ATP-binding protein YP_003928803.1 911404 R 765962 CDS YP_003928804.1 308184671 9787622 complement(912171..913151) 1 NC_014560.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; ABC-type transport system, permease; Iron(III) dicitrate transport system permease protein FecD; putative membrane protein 913151 9787622 HPSJM_04500 Helicobacter pylori SJM180 ABC-type transport system, permease; Iron(III) dicitrate transport system permease protein FecD; putative membrane protein YP_003928804.1 912171 R 765962 CDS YP_003928805.1 308184672 9787623 complement(913144..913998) 1 NC_014560.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short-chain oxidoreductase 913998 9787623 HPSJM_04505 Helicobacter pylori SJM180 short-chain oxidoreductase YP_003928805.1 913144 R 765962 CDS YP_003928806.1 308184673 9787624 914138..914662 1 NC_014560.1 COG1607 Acyl-CoA hydrolase; acyl coenzyme A thioesterase 914662 9787624 HPSJM_04510 Helicobacter pylori SJM180 acyl coenzyme A thioesterase YP_003928806.1 914138 D 765962 CDS YP_003928807.1 308184674 9787625 complement(915158..915400) 1 NC_014560.1 hypothetical protein 915400 9787625 HPSJM_04515 Helicobacter pylori SJM180 hypothetical protein YP_003928807.1 915158 R 765962 CDS YP_003928808.1 308184675 9787626 complement(915479..915745) 1 NC_014560.1 COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 915745 9787626 HPSJM_04520 Helicobacter pylori SJM180 hypothetical protein YP_003928808.1 915479 R 765962 CDS YP_003928809.1 308184676 9787627 complement(915726..916103) 1 NC_014560.1 hypothetical protein 916103 9787627 HPSJM_04525 Helicobacter pylori SJM180 hypothetical protein YP_003928809.1 915726 R 765962 CDS YP_003928810.1 308184677 9787628 complement(916182..916448) 1 NC_014560.1 COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 916448 9787628 HPSJM_04530 Helicobacter pylori SJM180 hypothetical protein YP_003928810.1 916182 R 765962 CDS YP_003928811.1 308184678 9787629 complement(916435..916803) 1 NC_014560.1 COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 916803 9787629 HPSJM_04535 Helicobacter pylori SJM180 hypothetical protein YP_003928811.1 916435 R 765962 CDS YP_003928812.1 308184679 9787630 complement(916948..917085) 1 NC_014560.1 hypothetical protein 917085 9787630 HPSJM_04540 Helicobacter pylori SJM180 hypothetical protein YP_003928812.1 916948 R 765962 CDS YP_003928813.1 308184680 9787631 complement(917107..919227) 1 NC_014560.1 outer membrane protein (omp19) 919227 9787631 HPSJM_04545 Helicobacter pylori SJM180 outer membrane protein (omp19) YP_003928813.1 917107 R 765962 CDS YP_003928814.1 308184681 9787632 919226..919453 1 NC_014560.1 hypothetical protein 919453 9787632 HPSJM_04550 Helicobacter pylori SJM180 hypothetical protein YP_003928814.1 919226 D 765962 CDS YP_003928815.1 308184682 9787635 919862..920473 1 NC_014560.1 hypothetical protein 920473 9787635 HPSJM_04555 Helicobacter pylori SJM180 hypothetical protein YP_003928815.1 919862 D 765962 CDS YP_003928816.1 308184683 9787636 complement(920424..921536) 1 NC_014560.1 COG0409 Hydrogenase maturation factor; hydrogenase expression/formation protein HypD 921536 9787636 HPSJM_04560 Helicobacter pylori SJM180 hydrogenase expression/formation protein HypD YP_003928816.1 920424 R 765962 CDS YP_003928817.1 308184684 9787637 complement(921542..921775) 1 NC_014560.1 COG0298 Hydrogenase maturation factor; hydrogenase expression/formation protein 921775 9787637 HPSJM_04565 Helicobacter pylori SJM180 hydrogenase expression/formation protein YP_003928817.1 921542 R 765962 CDS YP_003928818.1 308184685 9787638 complement(921775..922503) 1 NC_014560.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase/urease nickel incorporation protein hypB 922503 9787638 HPSJM_04570 Helicobacter pylori SJM180 hydrogenase/urease nickel incorporation protein hypB YP_003928818.1 921775 R 765962 CDS YP_003928819.1 308184686 9787639 complement(922615..922743) 1 NC_014560.1 hypothetical protein 922743 9787639 HPSJM_04575 Helicobacter pylori SJM180 hypothetical protein YP_003928819.1 922615 R 765962 CDS YP_003928820.1 308184687 9787640 complement(922754..923053) 1 NC_014560.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein 923053 9787640 HPSJM_04580 Helicobacter pylori SJM180 hypothetical protein YP_003928820.1 922754 R 765962 CDS YP_003928821.1 308184688 9787641 complement(923151..923507) 1 NC_014560.1 COG0282 Acetate kinase; acetate kinase 923507 9787641 HPSJM_04585 Helicobacter pylori SJM180 acetate kinase YP_003928821.1 923151 R 765962 CDS YP_003928822.1 308184689 9787642 complement(923537..924358) 1 NC_014560.1 COG0282 Acetate kinase; acetate kinase 924358 9787642 HPSJM_04590 Helicobacter pylori SJM180 acetate kinase YP_003928822.1 923537 R 765962 CDS YP_003928823.1 308184690 9787643 complement(926151..926300) 1 NC_014560.1 hypothetical protein 926300 9787643 HPSJM_04615 Helicobacter pylori SJM180 hypothetical protein YP_003928823.1 926151 R 765962 CDS YP_003928824.1 308184691 9787644 926294..927847 1 NC_014560.1 hypothetical protein 927847 9787644 HPSJM_04620 Helicobacter pylori SJM180 hypothetical protein YP_003928824.1 926294 D 765962 CDS YP_003928825.1 308184692 9787645 927898..928938 1 NC_014560.1 COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 928938 flgD 9787645 flgD Helicobacter pylori SJM180 flagellar basal body rod modification protein YP_003928825.1 927898 D 765962 CDS YP_003928826.1 308184693 9787646 928935..930752 1 NC_014560.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 930752 flgE 9787646 flgE Helicobacter pylori SJM180 flagellar hook protein FlgE YP_003928826.1 928935 D 765962 CDS YP_003928827.1 308184694 9787647 930804..931439 1 NC_014560.1 putative restriction endonuclease 931439 9787647 HPSJM_04635 Helicobacter pylori SJM180 putative restriction endonuclease YP_003928827.1 930804 D 765962 CDS YP_003928828.1 308184695 9787648 931408..932553 1 NC_014560.1 COG0827 Adenine-specific DNA methylase; type II DNA modification (methyltransferase) 932553 9787648 HPSJM_04640 Helicobacter pylori SJM180 type II DNA modification (methyltransferase) YP_003928828.1 931408 D 765962 CDS YP_003928829.1 308184696 9787649 932562..934589 1 NC_014560.1 COG0210 Superfamily I DNA and RNA helicases; rep helicase, single-stranded DNA-dependent ATPase (rep) 934589 9787649 HPSJM_04645 Helicobacter pylori SJM180 rep helicase, single-stranded DNA-dependent ATPase (rep) YP_003928829.1 932562 D 765962 CDS YP_003928830.1 308184697 9787650 935188..935289 1 NC_014560.1 hypothetical protein 935289 9787650 HPSJM_04650 Helicobacter pylori SJM180 hypothetical protein YP_003928830.1 935188 D 765962 CDS YP_003928831.1 308184698 9787651 935414..936961 1 NC_014560.1 outer membrane protein HopC 936961 9787651 HPSJM_04655 Helicobacter pylori SJM180 outer membrane protein HopC YP_003928831.1 935414 D 765962 CDS YP_003928832.1 308184699 9787652 936983..938584 1 NC_014560.1 outer membrane protein HopB 938584 9787652 HPSJM_04660 Helicobacter pylori SJM180 outer membrane protein HopB YP_003928832.1 936983 D 765962 CDS YP_003928833.1 308184700 9787653 complement(939486..941030) 1 NC_014560.1 COG1190 Lysyl-tRNA synthetase (class II); outer membrane protein HopG 941030 9787653 HPSJM_04665 Helicobacter pylori SJM180 outer membrane protein HopG YP_003928833.1 939486 R 765962 CDS YP_003928834.1 308184701 9787654 complement(941277..943724) 1 NC_014560.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 943724 9787654 HPSJM_04670 Helicobacter pylori SJM180 iron-regulated outer membrane protein YP_003928834.1 941277 R 765962 CDS YP_003928835.1 308184702 9787655 complement(943908..944339) 1 NC_014560.1 COG0009 Putative translation factor (SUA5); hypothetical protein 944339 9787655 HPSJM_04675 Helicobacter pylori SJM180 hypothetical protein YP_003928835.1 943908 R 765962 CDS YP_003928836.1 308184703 9787656 complement(944344..947601) 1 NC_014560.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 947601 carB 9787656 carB Helicobacter pylori SJM180 carbamoyl phosphate synthase large subunit YP_003928836.1 944344 R 765962 CDS YP_003928837.1 308184704 9787657 complement(947700..948392) 1 NC_014560.1 COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 948392 9787657 HPSJM_04685 Helicobacter pylori SJM180 hypothetical protein YP_003928837.1 947700 R 765962 CDS YP_003928838.1 308184705 9787658 948538..949536 1 NC_014560.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 949536 9787658 HPSJM_04690 Helicobacter pylori SJM180 glyceraldehyde-3-phosphate dehydrogenase YP_003928838.1 948538 D 765962 CDS YP_003928839.1 308184706 9787659 949616..956836 1 NC_014560.1 vacuolating cytotoxin VacA-like protein 956836 9787659 HPSJM_04695 Helicobacter pylori SJM180 vacuolating cytotoxin VacA-like protein YP_003928839.1 949616 D 765962 CDS YP_003928840.1 308184707 9787660 956889..957998 1 NC_014560.1 outer membrane protein HopK 957998 9787660 HPSJM_04700 Helicobacter pylori SJM180 outer membrane protein HopK YP_003928840.1 956889 D 765962 CDS YP_003928841.1 308184708 9787661 complement(958065..958271) 1 NC_014560.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase 958271 9787661 HPSJM_04705 Helicobacter pylori SJM180 4-oxalocrotonate tautomerase YP_003928841.1 958065 R 765962 CDS YP_003928842.1 308184709 9787662 958419..959000 1 NC_014560.1 COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 959000 recR 9787662 recR Helicobacter pylori SJM180 recombination protein RecR YP_003928842.1 958419 D 765962 CDS YP_003928843.1 308184710 9787663 958997..960142 1 NC_014560.1 COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 960142 truD 9787663 truD Helicobacter pylori SJM180 tRNA pseudouridine synthase D YP_003928843.1 958997 D 765962 CDS YP_003928844.1 308184711 9787664 960129..961061 1 NC_014560.1 COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 961061 9787664 HPSJM_04720 Helicobacter pylori SJM180 heat shock protein HtpX YP_003928844.1 960129 D 765962 CDS YP_003928845.1 308184712 9787665 961062..961604 1 NC_014560.1 COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 961604 folE 9787665 folE Helicobacter pylori SJM180 GTP cyclohydrolase I YP_003928845.1 961062 D 765962 CDS YP_003928846.1 308184713 9787666 961620..962531 1 NC_014560.1 COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 962531 9787666 HPSJM_04730 Helicobacter pylori SJM180 geranyltranstransferase YP_003928846.1 961620 D 765962 CDS YP_003928847.1 308184714 9787667 962528..963331 1 NC_014560.1 COG0496 Predicted acid phosphatase; stationary phase survival protein SurE 963331 surE 9787667 surE Helicobacter pylori SJM180 stationary phase survival protein SurE YP_003928847.1 962528 D 765962 CDS YP_003928848.1 308184715 9787668 963328..963987 1 NC_014560.1 hypothetical protein 963987 9787668 HPSJM_04740 Helicobacter pylori SJM180 hypothetical protein YP_003928848.1 963328 D 765962 CDS YP_003928849.1 308184716 9787669 963989..964591 1 NC_014560.1 COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 964591 9787669 HPSJM_04745 Helicobacter pylori SJM180 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_003928849.1 963989 D 765962 CDS YP_003928850.1 308184717 9787670 964588..965343 1 NC_014560.1 COG0602 Organic radical activating enzymes; hypothetical protein 965343 9787670 HPSJM_04750 Helicobacter pylori SJM180 hypothetical protein YP_003928850.1 964588 D 765962 CDS YP_003928851.1 308184718 9787671 965428..965913 1 NC_014560.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 965913 9787671 HPSJM_04755 Helicobacter pylori SJM180 hypothetical protein YP_003928851.1 965428 D 765962 CDS YP_003928852.1 308184719 9787672 966131..968116 1 NC_014560.1 putative outer membrane protein HomB 968116 9787672 HPSJM_04760 Helicobacter pylori SJM180 putative outer membrane protein HomB YP_003928852.1 966131 D 765962 CDS YP_003928853.1 308184720 9787673 complement(968540..969673) 1 NC_014560.1 COG0477 Permeases of the major facilitator superfamily; proline and betaine transporter 969673 9787673 HPSJM_04765 Helicobacter pylori SJM180 proline and betaine transporter YP_003928853.1 968540 R 765962 CDS YP_003928854.1 308184721 9787674 complement(970175..971512) 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 971512 9787674 HPSJM_04770 Helicobacter pylori SJM180 hypothetical protein YP_003928854.1 970175 R 765962 CDS YP_003928855.1 308184722 9787675 complement(971941..972663) 1 NC_014560.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter, permease protein 972663 9787675 HPSJM_04785 Helicobacter pylori SJM180 amino acid ABC transporter, permease protein YP_003928855.1 971941 R 765962 CDS YP_003928856.1 308184723 9787676 complement(972638..973414) 1 NC_014560.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter 973414 9787676 HPSJM_04790 Helicobacter pylori SJM180 amino acid ABC transporter YP_003928856.1 972638 R 765962 CDS YP_003928857.1 308184724 9787677 complement(973485..974618) 1 NC_014560.1 COG0787 Alanine racemase; alanine racemase 974618 9787677 HPSJM_04795 Helicobacter pylori SJM180 alanine racemase YP_003928857.1 973485 R 765962 CDS YP_003928858.1 308184725 9787678 complement(974625..975977) 1 NC_014560.1 COG1115 Na+/alanine symporter; D-alanine glycine permease 975977 9787678 HPSJM_04800 Helicobacter pylori SJM180 D-alanine glycine permease YP_003928858.1 974625 R 765962 CDS YP_003928859.1 308184726 9787679 complement(976018..977250) 1 NC_014560.1 COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase 977250 9787679 HPSJM_04805 Helicobacter pylori SJM180 D-amino acid dehydrogenase YP_003928859.1 976018 R 765962 CDS YP_003928860.1 308184727 9787680 complement(977273..977650) 1 NC_014560.1 COG0251 Putative translation initiation inhibitor, yjgF family; translation initiation inhibitor 977650 9787680 HPSJM_04810 Helicobacter pylori SJM180 translation initiation inhibitor YP_003928860.1 977273 R 765962 CDS YP_003928861.1 308184728 9787685 978581..980062 1 NC_014560.1 COG1757 Na+/H+ antiporter; putative cation antiporter; putative membrane protein 980062 9787685 HPSJM_04820 Helicobacter pylori SJM180 putative cation antiporter; putative membrane protein YP_003928861.1 978581 D 765962 CDS YP_003928862.1 308184729 9787686 980384..980746 1 NC_014560.1 hypothetical protein 980746 9787686 HPSJM_04825 Helicobacter pylori SJM180 hypothetical protein YP_003928862.1 980384 D 765962 CDS YP_003928863.1 308184730 9787687 980954..981151 1 NC_014560.1 hypothetical protein 981151 9787687 HPSJM_04830 Helicobacter pylori SJM180 hypothetical protein YP_003928863.1 980954 D 765962 CDS YP_003928864.1 308184731 9787688 complement(981327..982340) 1 NC_014560.1 hypothetical protein 982340 9787688 HPSJM_04835 Helicobacter pylori SJM180 hypothetical protein YP_003928864.1 981327 R 765962 CDS YP_003928865.1 308184732 9787689 complement(982350..982802) 1 NC_014560.1 COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase 982802 9787689 HPSJM_04840 Helicobacter pylori SJM180 rRNA large subunit methyltransferase YP_003928865.1 982350 R 765962 CDS YP_003928866.1 308184733 9787690 complement(982816..983685) 1 NC_014560.1 COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta 983685 9787690 HPSJM_04845 Helicobacter pylori SJM180 acetyl-CoA carboxylase subunit beta YP_003928866.1 982816 R 765962 CDS YP_003928867.1 308184734 9787691 983766..984380 1 NC_014560.1 COG0540 Aspartate carbamoyltransferase, catalytic chain; putative recombination protein RecO 984380 9787691 HPSJM_04850 Helicobacter pylori SJM180 putative recombination protein RecO YP_003928867.1 983766 D 765962 CDS YP_003928868.1 308184735 9787692 984391..985047 1 NC_014560.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); putative competence/damage-inducible protein CinA 985047 9787692 HPSJM_04855 Helicobacter pylori SJM180 putative competence/damage-inducible protein CinA YP_003928868.1 984391 D 765962 CDS YP_003928869.1 308184736 9787693 complement(985050..985616) 1 NC_014560.1 hypothetical protein 985616 9787693 HPSJM_04860 Helicobacter pylori SJM180 hypothetical protein YP_003928869.1 985050 R 765962 CDS YP_003928870.1 308184737 9787694 complement(985681..986313) 1 NC_014560.1 COG0778 Nitroreductase; oxygen-insensitive NADPH nitroreductase 986313 9787694 HPSJM_04865 Helicobacter pylori SJM180 oxygen-insensitive NADPH nitroreductase YP_003928870.1 985681 R 765962 CDS YP_003928871.1 308184738 9787695 complement(986324..987163) 1 NC_014560.1 COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase 987163 9787695 HPSJM_04870 Helicobacter pylori SJM180 prolipoprotein diacylglyceryl transferase YP_003928871.1 986324 R 765962 CDS YP_003928872.1 308184739 9787696 complement(987173..987901) 1 NC_014560.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 987901 9787696 HPSJM_04875 Helicobacter pylori SJM180 hypothetical protein YP_003928872.1 987173 R 765962 CDS YP_003928873.1 308184740 9787697 complement(987919..989100) 1 NC_014560.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 989100 9787697 HPSJM_04880 Helicobacter pylori SJM180 3-deoxy-D-manno-octulosonic-acid transferase YP_003928873.1 987919 R 765962 CDS YP_003928874.1 308184741 9787698 complement(989101..989865) 1 NC_014560.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding; hypothetical protein 989865 9787698 HPSJM_04885 Helicobacter pylori SJM180 hypothetical protein YP_003928874.1 989101 R 765962 CDS YP_003928875.1 308184742 9787699 complement(989875..990606) 1 NC_014560.1 COG0327 Uncharacterized conserved protein; hypothetical protein 990606 9787699 HPSJM_04890 Helicobacter pylori SJM180 hypothetical protein YP_003928875.1 989875 R 765962 CDS YP_003928876.1 308184743 9787700 complement(990608..991504) 1 NC_014560.1 COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha 991504 glyQ 9787700 glyQ Helicobacter pylori SJM180 glycyl-tRNA synthetase subunit alpha YP_003928876.1 990608 R 765962 CDS YP_003928877.1 308184744 9787701 complement(991518..992456) 1 NC_014560.1 COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 992456 gpsA 9787701 gpsA Helicobacter pylori SJM180 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_003928877.1 991518 R 765962 CDS YP_003928878.1 308184745 9787702 complement(998718..998843) 1 NC_014560.1 hypothetical protein 998843 9787702 HPSJM_04940 Helicobacter pylori SJM180 hypothetical protein YP_003928878.1 998718 R 765962 CDS YP_003928879.1 308184746 9787703 complement(998866..999147) 1 NC_014560.1 hypothetical protein 999147 9787703 HPSJM_04945 Helicobacter pylori SJM180 hypothetical protein YP_003928879.1 998866 R 765962 CDS YP_003928880.1 308184747 9787704 complement(999158..1002217) 1 NC_014560.1 COG3696 Putative silver efflux pump; cobalt-zinc-cadmium resistance protein 1002217 9787704 HPSJM_04950 Helicobacter pylori SJM180 cobalt-zinc-cadmium resistance protein YP_003928880.1 999158 R 765962 CDS YP_003928881.1 308184748 9787705 complement(1002217..1003296) 1 NC_014560.1 COG0845 Membrane-fusion protein; cobalt-zinc-cadmium resistance protein 1003296 9787705 HPSJM_04955 Helicobacter pylori SJM180 cobalt-zinc-cadmium resistance protein YP_003928881.1 1002217 R 765962 CDS YP_003928882.1 308184749 9787706 complement(1003293..1004600) 1 NC_014560.1 hypothetical protein 1004600 9787706 HPSJM_04960 Helicobacter pylori SJM180 hypothetical protein YP_003928882.1 1003293 R 765962 CDS YP_003928883.1 308184750 9787707 complement(1004590..1006692) 1 NC_014560.1 COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1006692 glyS 9787707 glyS Helicobacter pylori SJM180 glycyl-tRNA synthetase subunit beta YP_003928883.1 1004590 R 765962 CDS YP_003928884.1 308184751 9787708 complement(1006827..1006970) 1 NC_014560.1 hypothetical protein 1006970 9787708 HPSJM_04970 Helicobacter pylori SJM180 hypothetical protein YP_003928884.1 1006827 R 765962 CDS YP_003928885.1 308184752 9787709 1007874..1009349 1 NC_014560.1 COG0696 Phosphoglyceromutase; phosphoglyceromutase 1009349 9787709 HPSJM_04975 Helicobacter pylori SJM180 phosphoglyceromutase YP_003928885.1 1007874 D 765962 CDS YP_003928886.1 308184753 9787710 1009364..1009645 1 NC_014560.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA amidotransferase subunit C 1009645 gatC 9787710 gatC Helicobacter pylori SJM180 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_003928886.1 1009364 D 765962 CDS YP_003928887.1 308184754 9787711 complement(1009779..1011089) 1 NC_014560.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine--8-amino-7-oxononanoate transaminase 1011089 9787711 HPSJM_04985 Helicobacter pylori SJM180 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_003928887.1 1009779 R 765962 CDS YP_003928888.1 308184755 9787712 1011219..1012682 1 NC_014560.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) 1012682 9787712 HPSJM_04990 Helicobacter pylori SJM180 putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) YP_003928888.1 1011219 D 765962 CDS YP_003928889.1 308184756 9787713 1012698..1014179 1 NC_014560.1 COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 1014179 9787713 HPSJM_04995 Helicobacter pylori SJM180 cell division protein FtsA YP_003928889.1 1012698 D 765962 CDS YP_003928890.1 308184757 9787714 1014310..1015467 1 NC_014560.1 COG0206 Cell division GTPase; cell division protein FtsZ 1015467 9787714 HPSJM_05000 Helicobacter pylori SJM180 cell division protein FtsZ YP_003928890.1 1014310 D 765962 CDS YP_003928891.1 308184758 9787715 complement(1015840..1016298) 1 NC_014560.1 hypothetical protein 1016298 9787715 HPSJM_05005 Helicobacter pylori SJM180 hypothetical protein YP_003928891.1 1015840 R 765962 CDS YP_003928892.1 308184759 9787716 complement(1016388..1016627) 1 NC_014560.1 hypothetical protein 1016627 9787716 HPSJM_05010 Helicobacter pylori SJM180 hypothetical protein YP_003928892.1 1016388 R 765962 CDS YP_003928893.1 308184760 9787717 complement(1016609..1017142) 1 NC_014560.1 hypothetical protein 1017142 9787717 HPSJM_05015 Helicobacter pylori SJM180 hypothetical protein YP_003928893.1 1016609 R 765962 CDS YP_003928894.1 308184761 9787718 complement(1017129..1017260) 1 NC_014560.1 hypothetical protein 1017260 9787718 HPSJM_05020 Helicobacter pylori SJM180 hypothetical protein YP_003928894.1 1017129 R 765962 CDS YP_003928895.1 308184762 9787719 complement(1017313..1018137) 1 NC_014560.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS 1018137 9787719 HPSJM_05025 Helicobacter pylori SJM180 mechanosensitive channel MscS YP_003928895.1 1017313 R 765962 CDS YP_003928896.1 308184763 9787720 complement(1018530..1018676) 1 NC_014560.1 hypothetical protein 1018676 9787720 HPSJM_05030 Helicobacter pylori SJM180 hypothetical protein YP_003928896.1 1018530 R 765962 CDS YP_003928897.1 308184764 9787721 complement(1018739..1018873) 1 NC_014560.1 hypothetical protein 1018873 9787721 HPSJM_05035 Helicobacter pylori SJM180 hypothetical protein YP_003928897.1 1018739 R 765962 CDS YP_003928898.1 308184765 9787724 complement(1022284..1022550) 1 NC_014560.1 hypothetical protein 1022550 9787724 HPSJM_05040 Helicobacter pylori SJM180 hypothetical protein YP_003928898.1 1022284 R 765962 CDS YP_003928899.1 308184766 9787725 1023448..1025193 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 1025193 9787725 HPSJM_05045 Helicobacter pylori SJM180 hypothetical protein YP_003928899.1 1023448 D 765962 CDS YP_003928900.1 308184767 9787726 1025235..1026488 1 NC_014560.1 COG0608 Single-stranded DNA-specific exonuclease; hypothetical protein 1026488 9787726 HPSJM_05050 Helicobacter pylori SJM180 hypothetical protein YP_003928900.1 1025235 D 765962 CDS YP_003928901.1 308184768 9787727 1028376..1028471 1 NC_014560.1 hypothetical protein 1028471 9787727 HPSJM_05065 Helicobacter pylori SJM180 hypothetical protein YP_003928901.1 1028376 D 765962 CDS YP_003928902.1 308184769 9787728 1028507..1029433 1 NC_014560.1 hypothetical protein 1029433 9787728 HPSJM_05070 Helicobacter pylori SJM180 hypothetical protein YP_003928902.1 1028507 D 765962 CDS YP_003928903.1 308184770 9787729 1029586..1029807 1 NC_014560.1 COG1598 Uncharacterized conserved protein; hypothetical protein 1029807 9787729 HPSJM_05075 Helicobacter pylori SJM180 hypothetical protein YP_003928903.1 1029586 D 765962 CDS YP_003928904.1 308184771 9787730 1029899..1029994 1 NC_014560.1 hypothetical protein 1029994 9787730 HPSJM_05080 Helicobacter pylori SJM180 hypothetical protein YP_003928904.1 1029899 D 765962 CDS YP_003928905.1 308184772 9787731 complement(1030069..1031916) 1 NC_014560.1 COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase 1031916 9787731 HPSJM_05085 Helicobacter pylori SJM180 arginine decarboxylase YP_003928905.1 1030069 R 765962 CDS YP_003928906.1 308184773 9787732 complement(1031931..1033100) 1 NC_014560.1 COG0438 Glycosyltransferase; putative polysaccharide biosynthesis protein 1033100 9787732 HPSJM_05090 Helicobacter pylori SJM180 putative polysaccharide biosynthesis protein YP_003928906.1 1031931 R 765962 CDS YP_003928907.1 308184774 9787733 complement(1033105..1033533) 1 NC_014560.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 1033533 9787733 HPSJM_05095 Helicobacter pylori SJM180 hypothetical protein YP_003928907.1 1033105 R 765962 CDS YP_003928908.1 308184775 9787734 complement(1033548..1034333) 1 NC_014560.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 1034333 9787734 HPSJM_05100 Helicobacter pylori SJM180 hypothetical protein YP_003928908.1 1033548 R 765962 CDS YP_003928909.1 308184776 9787735 complement(1034337..1035344) 1 NC_014560.1 hypothetical protein 1035344 9787735 HPSJM_05105 Helicobacter pylori SJM180 hypothetical protein YP_003928909.1 1034337 R 765962 CDS YP_003928910.1 308184777 9787736 complement(1035345..1037297) 1 NC_014560.1 COG0143 Methionyl-tRNA synthetase; methionyl-tRNA synthetase 1037297 9787736 HPSJM_05110 Helicobacter pylori SJM180 methionyl-tRNA synthetase YP_003928910.1 1035345 R 765962 CDS YP_003928911.1 308184778 9787737 1037466..1038635 1 NC_014560.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acid synthase 1038635 9787737 HPSJM_05115 Helicobacter pylori SJM180 cyclopropane fatty acid synthase YP_003928911.1 1037466 D 765962 CDS YP_003928912.1 308184779 9787738 complement(1038638..1040509) 1 NC_014560.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 1040509 9787738 HPSJM_05120 Helicobacter pylori SJM180 hypothetical protein YP_003928912.1 1038638 R 765962 CDS YP_003928913.1 308184780 9787739 1040563..1040754 1 NC_014560.1 hypothetical protein 1040754 9787739 HPSJM_05125 Helicobacter pylori SJM180 hypothetical protein YP_003928913.1 1040563 D 765962 CDS YP_003928914.1 308184781 9787744 complement(1041629..1042411) 1 NC_014560.1 hypothetical protein 1042411 9787744 HPSJM_05130 Helicobacter pylori SJM180 hypothetical protein YP_003928914.1 1041629 R 765962 CDS YP_003928915.1 308184782 9787745 complement(1042464..1043990) 1 NC_014560.1 COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase 1043990 guaA 9787745 guaA Helicobacter pylori SJM180 GMP synthase YP_003928915.1 1042464 R 765962 CDS YP_003928916.1 308184783 9787746 complement(1044001..1044489) 1 NC_014560.1 hypothetical protein 1044489 9787746 HPSJM_05140 Helicobacter pylori SJM180 hypothetical protein YP_003928916.1 1044001 R 765962 CDS YP_003928917.1 308184784 9787747 complement(1044500..1044670) 1 NC_014560.1 hypothetical protein 1044670 9787747 HPSJM_05145 Helicobacter pylori SJM180 hypothetical protein YP_003928917.1 1044500 R 765962 CDS YP_003928918.1 308184785 9787748 complement(1044660..1047050) 1 NC_014560.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Biotin sulfoxide reductase; putative signal peptide 1047050 9787748 HPSJM_05150 Helicobacter pylori SJM180 Biotin sulfoxide reductase; putative signal peptide YP_003928918.1 1044660 R 765962 CDS YP_003928919.1 308184786 9787749 complement(1047154..1047744) 1 NC_014560.1 hypothetical protein 1047744 9787749 HPSJM_05155 Helicobacter pylori SJM180 hypothetical protein YP_003928919.1 1047154 R 765962 CDS YP_003928920.1 308184787 9787750 complement(1047770..1049092) 1 NC_014560.1 COG0520 Selenocysteine lyase; nifs-like protein 1049092 9787750 HPSJM_05160 Helicobacter pylori SJM180 nifs-like protein YP_003928920.1 1047770 R 765962 CDS YP_003928921.1 308184788 9787751 complement(1049111..1049425) 1 NC_014560.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; ADP hydrolase 1049425 9787751 HPSJM_05165 Helicobacter pylori SJM180 ADP hydrolase YP_003928921.1 1049111 R 765962 CDS YP_003928922.1 308184789 9787752 1049507..1050493 1 NC_014560.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1050493 pheS 9787752 pheS Helicobacter pylori SJM180 phenylalanyl-tRNA synthetase subunit alpha YP_003928922.1 1049507 D 765962 CDS YP_003928923.1 308184790 9787753 1050493..1052787 1 NC_014560.1 COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta 1052787 pheT 9787753 pheT Helicobacter pylori SJM180 phenylalanyl-tRNA synthetase subunit beta YP_003928923.1 1050493 D 765962 CDS YP_003928924.1 308184791 9787754 1052802..1054091 1 NC_014560.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1054091 9787754 HPSJM_05180 Helicobacter pylori SJM180 3-phosphoshikimate 1-carboxyvinyltransferase YP_003928924.1 1052802 D 765962 CDS YP_003928925.1 308184792 9787755 1054081..1054905 1 NC_014560.1 COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1054905 ispH 9787755 ispH Helicobacter pylori SJM180 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_003928925.1 1054081 D 765962 CDS YP_003928926.1 308184793 9787756 1055026..1056696 1 NC_014560.1 COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1056696 rpsA 9787756 rpsA Helicobacter pylori SJM180 30S ribosomal protein S1 YP_003928926.1 1055026 D 765962 CDS YP_003928927.1 308184794 9787757 1056725..1057255 1 NC_014560.1 hypothetical protein 1057255 9787757 HPSJM_05195 Helicobacter pylori SJM180 hypothetical protein YP_003928927.1 1056725 D 765962 CDS YP_003928928.1 308184795 9787758 1057271..1058845 1 NC_014560.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 1058845 9787758 HPSJM_05200 Helicobacter pylori SJM180 D-3-phosphoglycerate dehydrogenase YP_003928928.1 1057271 D 765962 CDS YP_003928929.1 308184796 9787759 1058855..1060705 1 NC_014560.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 1060705 9787759 HPSJM_05205 Helicobacter pylori SJM180 hypothetical protein YP_003928929.1 1058855 D 765962 CDS YP_003928930.1 308184797 9787760 1060729..1061397 1 NC_014560.1 COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 1061397 9787760 HPSJM_05210 Helicobacter pylori SJM180 hypothetical protein YP_003928930.1 1060729 D 765962 CDS YP_003928931.1 308184798 9787761 1061399..1062157 1 NC_014560.1 COG2908 Uncharacterized protein conserved in bacteria; UDP-2, 3-diacylglucosamine hydrolase 1062157 9787761 HPSJM_05215 Helicobacter pylori SJM180 UDP-2, 3-diacylglucosamine hydrolase YP_003928931.1 1061399 D 765962 CDS YP_003928932.1 308184799 9787762 1062161..1063096 1 NC_014560.1 COG0835 Chemotaxis signal transduction protein; CheA-MCP interaction modulator 1063096 9787762 HPSJM_05220 Helicobacter pylori SJM180 CheA-MCP interaction modulator YP_003928932.1 1062161 D 765962 CDS YP_003928933.1 308184800 9787763 1063153..1065573 1 NC_014560.1 COG0643 Chemotaxis protein histidine kinase and related kinases; auto phosphorylating histidine kinase 1065573 9787763 HPSJM_05225 Helicobacter pylori SJM180 auto phosphorylating histidine kinase YP_003928933.1 1063153 D 765962 CDS YP_003928934.1 308184801 9787764 1065570..1066067 1 NC_014560.1 COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein (cheW) 1066067 9787764 HPSJM_05230 Helicobacter pylori SJM180 purine-binding chemotaxis protein (cheW) YP_003928934.1 1065570 D 765962 CDS YP_003928935.1 308184802 9787765 complement(1066329..1066829) 1 NC_014560.1 COG2077 Peroxiredoxin; thiol peroxidase 1066829 9787765 HPSJM_05235 Helicobacter pylori SJM180 thiol peroxidase YP_003928935.1 1066329 R 765962 CDS YP_003928936.1 308184803 9787766 1067052..1067693 1 NC_014560.1 COG0605 Superoxide dismutase; superoxide dismutase 1067693 9787766 HPSJM_05240 Helicobacter pylori SJM180 superoxide dismutase YP_003928936.1 1067052 D 765962 CDS YP_003928937.1 308184804 9787767 1067745..1068464 1 NC_014560.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 1068464 9787767 HPSJM_05245 Helicobacter pylori SJM180 hypothetical protein YP_003928937.1 1067745 D 765962 CDS YP_003928938.1 308184805 9787768 complement(1068526..1070385) 1 NC_014560.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA 1070385 9787768 HPSJM_05250 Helicobacter pylori SJM180 primosome assembly protein PriA YP_003928938.1 1068526 R 765962 CDS YP_003928939.1 308184806 9787769 complement(1070370..1070606) 1 NC_014560.1 hypothetical protein 1070606 9787769 HPSJM_05255 Helicobacter pylori SJM180 hypothetical protein YP_003928939.1 1070370 R 765962 CDS YP_003928940.1 308184807 9787770 complement(1070621..1070848) 1 NC_014560.1 COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein 1070848 9787770 HPSJM_05260 Helicobacter pylori SJM180 hypothetical protein YP_003928940.1 1070621 R 765962 CDS YP_003928941.1 308184808 9787771 1071030..1071776 1 NC_014560.1 hypothetical protein 1071776 9787771 HPSJM_05265 Helicobacter pylori SJM180 hypothetical protein YP_003928941.1 1071030 D 765962 CDS YP_003928942.1 308184809 9787772 complement(1071784..1072311) 1 NC_014560.1 hypothetical protein 1072311 9787772 HPSJM_05270 Helicobacter pylori SJM180 hypothetical protein YP_003928942.1 1071784 R 765962 CDS YP_003928943.1 308184810 9787773 1072310..1072411 1 NC_014560.1 hypothetical protein 1072411 9787773 HPSJM_05275 Helicobacter pylori SJM180 hypothetical protein YP_003928943.1 1072310 D 765962 CDS YP_003928944.1 308184811 9787774 1072491..1073714 1 NC_014560.1 COG0501 Zn-dependent protease with chaperone function; putative metalloprotease; putative membrane protein 1073714 9787774 HPSJM_05280 Helicobacter pylori SJM180 putative metalloprotease; putative membrane protein YP_003928944.1 1072491 D 765962 CDS YP_003928945.1 308184812 9787775 1073711..1074541 1 NC_014560.1 COG2890 Methylase of polypeptide chain release factors; S-adenosylmethionine-dependent methyltransferase 1074541 9787775 HPSJM_05285 Helicobacter pylori SJM180 S-adenosylmethionine-dependent methyltransferase YP_003928945.1 1073711 D 765962 CDS YP_003928946.1 308184813 9787776 1074605..1075951 1 NC_014560.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1075951 9787776 HPSJM_05290 Helicobacter pylori SJM180 glutamate dehydrogenase YP_003928946.1 1074605 D 765962 CDS YP_003928947.1 308184814 9787777 complement(1075964..1077181) 1 NC_014560.1 Alpha-(1, 3)-fucosyltransferase 1077181 9787777 HPSJM_05295 Helicobacter pylori SJM180 Alpha-(1, 3)-fucosyltransferase YP_003928947.1 1075964 R 765962 CDS YP_003928948.1 308184815 9787778 complement(1077283..1080093) 1 NC_014560.1 COG1333 ResB protein required for cytochrome c biosynthesis; cytochrome c-type biogenesis protein 1080093 9787778 HPSJM_05300 Helicobacter pylori SJM180 cytochrome c-type biogenesis protein YP_003928948.1 1077283 R 765962 CDS YP_003928949.1 308184816 9787779 complement(1080103..1080774) 1 NC_014560.1 COG2143 Thioredoxin-related protein; hypothetical protein 1080774 9787779 HPSJM_05305 Helicobacter pylori SJM180 hypothetical protein YP_003928949.1 1080103 R 765962 CDS YP_003928950.1 308184817 9787780 complement(1080847..1081854) 1 NC_014560.1 COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 1081854 hemH 9787780 hemH Helicobacter pylori SJM180 ferrochelatase YP_003928950.1 1080847 R 765962 CDS YP_003928951.1 308184818 9787781 1081910..1082341 1 NC_014560.1 hypothetical protein 1082341 9787781 HPSJM_05315 Helicobacter pylori SJM180 hypothetical protein YP_003928951.1 1081910 D 765962 CDS YP_003928952.1 308184819 9787782 1082342..1083022 1 NC_014560.1 COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 1083022 9787782 HPSJM_05320 Helicobacter pylori SJM180 16S ribosomal RNA methyltransferase RsmE YP_003928952.1 1082342 D 765962 CDS YP_003928953.1 308184820 9787783 complement(1083115..1085223) 1 NC_014560.1 outer membrane protein HomC 1085223 9787783 HPSJM_05325 Helicobacter pylori SJM180 outer membrane protein HomC YP_003928953.1 1083115 R 765962 CDS YP_003928954.1 308184821 9787784 complement(1085391..1085957) 1 NC_014560.1 COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase 1085957 dcd 9787784 dcd Helicobacter pylori SJM180 deoxycytidine triphosphate deaminase YP_003928954.1 1085391 R 765962 CDS YP_003928955.1 308184822 9787785 1086087..1086572 1 NC_014560.1 COG0511 Biotin carboxyl carrier protein; biotin carboxyl carrier protein 1086572 9787785 HPSJM_05335 Helicobacter pylori SJM180 biotin carboxyl carrier protein YP_003928955.1 1086087 D 765962 CDS YP_003928956.1 308184823 9787786 1086578..1087945 1 NC_014560.1 COG0439 Biotin carboxylase; biotin carboxylase 1087945 9787786 HPSJM_05340 Helicobacter pylori SJM180 biotin carboxylase YP_003928956.1 1086578 D 765962 CDS YP_003928957.1 308184824 9787787 1088038..1089000 1 NC_014560.1 putative adenine methyltransferase 1089000 9787787 HPSJM_05345 Helicobacter pylori SJM180 putative adenine methyltransferase YP_003928957.1 1088038 D 765962 CDS YP_003928958.1 308184825 9787788 1089642..1090241 1 NC_014560.1 hypothetical protein 1090241 9787788 HPSJM_05360 Helicobacter pylori SJM180 hypothetical protein YP_003928958.1 1089642 D 765962 CDS YP_003928959.1 308184826 9787789 1090238..1091365 1 NC_014560.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; spore coat polysaccharide biosynthesis protein C 1091365 9787789 HPSJM_05365 Helicobacter pylori SJM180 spore coat polysaccharide biosynthesis protein C YP_003928959.1 1090238 D 765962 CDS YP_003928960.1 308184827 9787791 1091686..1092711 1 NC_014560.1 COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1092711 nrdF 9787791 nrdF Helicobacter pylori SJM180 ribonucleotide-diphosphate reductase subunit beta YP_003928960.1 1091686 D 765962 CDS YP_003928961.1 308184828 9787792 1092721..1093350 1 NC_014560.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 1093350 pcm 9787792 pcm Helicobacter pylori SJM180 protein-L-isoaspartate O-methyltransferase YP_003928961.1 1092721 D 765962 CDS YP_003928962.1 308184829 9787793 1093361..1094398 1 NC_014560.1 COG0795 Predicted permeases; hypothetical protein 1094398 9787793 HPSJM_05385 Helicobacter pylori SJM180 hypothetical protein YP_003928962.1 1093361 D 765962 CDS YP_003928963.1 308184830 9787794 1094400..1095128 1 NC_014560.1 COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 1095128 truA 9787794 truA Helicobacter pylori SJM180 tRNA pseudouridine synthase A YP_003928963.1 1094400 D 765962 CDS YP_003928964.1 308184831 9787795 complement(1095122..1096156) 1 NC_014560.1 COG1087 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1096156 9787795 HPSJM_05395 Helicobacter pylori SJM180 UDP-glucose 4-epimerase YP_003928964.1 1095122 R 765962 CDS YP_003928965.1 308184832 9787798 1096886..1098421 1 NC_014560.1 putative Outer membrane protein 1098421 9787798 HPSJM_05410 Helicobacter pylori SJM180 putative Outer membrane protein YP_003928965.1 1096886 D 765962 CDS YP_003928966.1 308184833 9787799 1098442..1099194 1 NC_014560.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity; putative short chain dehydrogenase 1099194 9787799 HPSJM_05415 Helicobacter pylori SJM180 putative short chain dehydrogenase YP_003928966.1 1098442 D 765962 CDS YP_003928967.1 308184834 9787800 complement(1099409..1100281) 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1100281 9787800 HPSJM_05420 Helicobacter pylori SJM180 hypothetical protein YP_003928967.1 1099409 R 765962 CDS YP_003928968.1 308184835 9787801 complement(1100351..1100977) 1 NC_014560.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase 1100977 9787801 HPSJM_05425 Helicobacter pylori SJM180 2-keto-3-deoxy-6-phosphogluconate aldolase YP_003928968.1 1100351 R 765962 CDS YP_003928969.1 308184836 9787802 complement(1100996..1102822) 1 NC_014560.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase 1102822 9787802 HPSJM_05430 Helicobacter pylori SJM180 phosphogluconate dehydratase YP_003928969.1 1100996 R 765962 CDS YP_003928970.1 308184837 9787803 1102888..1104165 1 NC_014560.1 COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1104165 9787803 HPSJM_05435 Helicobacter pylori SJM180 glucose-6-phosphate 1-dehydrogenase YP_003928970.1 1102888 D 765962 CDS YP_003928971.1 308184838 9787804 1104176..1104859 1 NC_014560.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; 6-phosphogluconolactonase 1104859 9787804 HPSJM_05440 Helicobacter pylori SJM180 6-phosphogluconolactonase YP_003928971.1 1104176 D 765962 CDS YP_003928972.1 308184839 9787805 1104846..1105856 1 NC_014560.1 COG0837 Glucokinase; glucokinase 1105856 glk 9787805 glk Helicobacter pylori SJM180 glucokinase YP_003928972.1 1104846 D 765962 CDS YP_003928973.1 308184840 9787806 1106026..1107072 1 NC_014560.1 COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1107072 9787806 HPSJM_05450 Helicobacter pylori SJM180 NADP-dependent alcohol dehydrogenase YP_003928973.1 1106026 D 765962 CDS YP_003928974.1 308184841 9787807 complement(1107085..1108251) 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein 1108251 9787807 HPSJM_05455 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928974.1 1107085 R 765962 CDS YP_003928975.1 308184842 9787808 1108257..1108400 1 NC_014560.1 hypothetical protein 1108400 9787808 HPSJM_05460 Helicobacter pylori SJM180 hypothetical protein YP_003928975.1 1108257 D 765962 CDS YP_003928976.1 308184843 9787809 complement(1108386..1109582) 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein 1109582 9787809 HPSJM_05465 Helicobacter pylori SJM180 putative lipopolysaccharide biosynthesis protein YP_003928976.1 1108386 R 765962 CDS YP_003928977.1 308184844 9787810 1109763..1111070 1 NC_014560.1 hypothetical protein 1111070 9787810 HPSJM_05470 Helicobacter pylori SJM180 hypothetical protein YP_003928977.1 1109763 D 765962 CDS YP_003928978.1 308184845 9787811 complement(1111077..1111739) 1 NC_014560.1 outer membrane protein (omp23) 1111739 9787811 HPSJM_05475 Helicobacter pylori SJM180 outer membrane protein (omp23) YP_003928978.1 1111077 R 765962 CDS YP_003928979.1 308184846 9787812 1112029..1112589 1 NC_014560.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate flavodoxin oxidoreductase subunit gamma 1112589 9787812 HPSJM_05480 Helicobacter pylori SJM180 pyruvate flavodoxin oxidoreductase subunit gamma YP_003928979.1 1112029 D 765962 CDS YP_003928980.1 308184847 9787813 1112605..1112997 1 NC_014560.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit; pyruvate flavodoxin oxidoreductase subunit delta 1112997 porD 9787813 porD Helicobacter pylori SJM180 pyruvate flavodoxin oxidoreductase subunit delta YP_003928980.1 1112605 D 765962 CDS YP_003928981.1 308184848 9787814 1113007..1114230 1 NC_014560.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin oxidoreductase subunit alpha 1114230 porA 9787814 porA Helicobacter pylori SJM180 pyruvate flavodoxin oxidoreductase subunit alpha YP_003928981.1 1113007 D 765962 CDS YP_003928982.1 308184849 9787815 1114243..1115187 1 NC_014560.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; pyruvate ferredoxin oxidoreductase, beta subunit 1115187 9787815 HPSJM_05495 Helicobacter pylori SJM180 pyruvate ferredoxin oxidoreductase, beta subunit YP_003928982.1 1114243 D 765962 CDS YP_003928983.1 308184850 9787816 1115295..1116617 1 NC_014560.1 COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 1116617 9787816 HPSJM_05500 Helicobacter pylori SJM180 adenylosuccinate lyase YP_003928983.1 1115295 D 765962 CDS YP_003928984.1 308184851 9787817 1116915..1117748 1 NC_014560.1 putative outer membrane protein; putative signal peptide 1117748 9787817 HPSJM_05505 Helicobacter pylori SJM180 putative outer membrane protein; putative signal peptide YP_003928984.1 1116915 D 765962 CDS YP_003928985.1 308184852 9787818 complement(1117759..1119735) 1 NC_014560.1 COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B 1119735 9787818 HPSJM_05510 Helicobacter pylori SJM180 excinuclease ABC subunit B YP_003928985.1 1117759 R 765962 CDS YP_003928986.1 308184853 9787819 complement(1119776..1120522) 1 NC_014560.1 hypothetical protein 1120522 9787819 HPSJM_05515 Helicobacter pylori SJM180 hypothetical protein YP_003928986.1 1119776 R 765962 CDS YP_003928987.1 308184854 9787820 complement(1120612..1120851) 1 NC_014560.1 hypothetical protein 1120851 9787820 HPSJM_05520 Helicobacter pylori SJM180 hypothetical protein YP_003928987.1 1120612 R 765962 CDS YP_003928988.1 308184855 9787821 complement(1120894..1123227) 1 NC_014560.1 hypothetical protein 1123227 9787821 HPSJM_05525 Helicobacter pylori SJM180 hypothetical protein YP_003928988.1 1120894 R 765962 CDS YP_003928989.1 308184856 9787822 complement(1123508..1124278) 1 NC_014560.1 COG0790 FOG: TPR repeat, SEL1 subfamily; cysteine-rich protein X 1124278 9787822 HPSJM_05530 Helicobacter pylori SJM180 cysteine-rich protein X YP_003928989.1 1123508 R 765962 CDS YP_003928990.1 308184857 9787823 complement(1124303..1124506) 1 NC_014560.1 hypothetical protein 1124506 9787823 HPSJM_05535 Helicobacter pylori SJM180 hypothetical protein YP_003928990.1 1124303 R 765962 CDS YP_003928991.1 308184858 9787824 complement(1124522..1126225) 1 NC_014560.1 COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase (ggt) 1126225 9787824 HPSJM_05540 Helicobacter pylori SJM180 gamma-glutamyltranspeptidase (ggt) YP_003928991.1 1124522 R 765962 CDS YP_003928992.1 308184859 9787825 complement(1126413..1128233) 1 NC_014560.1 COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 1128233 flgK 9787825 flgK Helicobacter pylori SJM180 flagellar hook-associated protein FlgK YP_003928992.1 1126413 R 765962 CDS YP_003928993.1 308184860 9787826 complement(1128235..1128669) 1 NC_014560.1 hypothetical protein 1128669 9787826 HPSJM_05550 Helicobacter pylori SJM180 hypothetical protein YP_003928993.1 1128235 R 765962 CDS YP_003928994.1 308184861 9787827 complement(1128801..1129757) 1 NC_014560.1 COG0270 Site-specific DNA methylase; type II DNA modification enzyme 1129757 9787827 HPSJM_05555 Helicobacter pylori SJM180 type II DNA modification enzyme YP_003928994.1 1128801 R 765962 CDS YP_003928995.1 308184862 9787828 complement(1129899..1130102) 1 NC_014560.1 hypothetical protein 1130102 9787828 HPSJM_05560 Helicobacter pylori SJM180 hypothetical protein YP_003928995.1 1129899 R 765962 CDS YP_003928996.1 308184863 9787829 complement(1130166..1130372) 1 NC_014560.1 hypothetical protein 1130372 9787829 HPSJM_05565 Helicobacter pylori SJM180 hypothetical protein YP_003928996.1 1130166 R 765962 CDS YP_003928997.1 308184864 9787830 complement(1130407..1130964) 1 NC_014560.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase slyD 1130964 9787830 HPSJM_05570 Helicobacter pylori SJM180 FKBP-type peptidyl-prolyl cis-trans isomerase slyD YP_003928997.1 1130407 R 765962 CDS YP_003928998.1 308184865 9787831 complement(1130951..1131946) 1 NC_014560.1 hypothetical protein 1131946 9787831 HPSJM_05575 Helicobacter pylori SJM180 hypothetical protein YP_003928998.1 1130951 R 765962 CDS YP_003928999.1 308184866 9787832 complement(1131954..1132493) 1 NC_014560.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein precursor 1132493 9787832 HPSJM_05580 Helicobacter pylori SJM180 peptidoglycan-associated lipoprotein precursor YP_003928999.1 1131954 R 765962 CDS YP_003929000.1 308184867 9787833 complement(1132560..1133813) 1 NC_014560.1 COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB 1133813 tolB 9787833 tolB Helicobacter pylori SJM180 translocation protein TolB YP_003929000.1 1132560 R 765962 CDS YP_003929001.1 308184868 9787834 complement(1133810..1134604) 1 NC_014560.1 hypothetical protein 1134604 9787834 HPSJM_05590 Helicobacter pylori SJM180 hypothetical protein YP_003929001.1 1133810 R 765962 CDS YP_003929002.1 308184869 9787835 complement(1134623..1135024) 1 NC_014560.1 COG0848 Biopolymer transport protein; Biopolymer transport protein ExbD/TolR 1135024 9787835 HPSJM_05595 Helicobacter pylori SJM180 Biopolymer transport protein ExbD/TolR YP_003929002.1 1134623 R 765962 CDS YP_003929003.1 308184870 9787836 complement(1135077..1135646) 1 NC_014560.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1135646 9787836 HPSJM_05600 Helicobacter pylori SJM180 biopolymer transport protein YP_003929003.1 1135077 R 765962 CDS YP_003929004.1 308184871 9787837 complement(1135657..1136028) 1 NC_014560.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon 1136028 atpC 9787837 atpC Helicobacter pylori SJM180 F0F1 ATP synthase subunit epsilon YP_003929004.1 1135657 R 765962 CDS YP_003929005.1 308184872 9787838 complement(1136039..1137448) 1 NC_014560.1 COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta 1137448 9787838 HPSJM_05610 Helicobacter pylori SJM180 F0F1 ATP synthase subunit beta YP_003929005.1 1136039 R 765962 CDS YP_003929006.1 308184873 9787839 complement(1137472..1138377) 1 NC_014560.1 COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma 1138377 9787839 HPSJM_05615 Helicobacter pylori SJM180 F0F1 ATP synthase subunit gamma YP_003929006.1 1137472 R 765962 CDS YP_003929007.1 308184874 9787840 complement(1138392..1139903) 1 NC_014560.1 COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha 1139903 9787840 HPSJM_05620 Helicobacter pylori SJM180 F0F1 ATP synthase subunit alpha YP_003929007.1 1138392 R 765962 CDS YP_003929008.1 308184875 9787841 complement(1139926..1140468) 1 NC_014560.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta 1140468 9787841 HPSJM_05625 Helicobacter pylori SJM180 F0F1 ATP synthase subunit delta YP_003929008.1 1139926 R 765962 CDS YP_003929009.1 308184876 9787842 complement(1140469..1140984) 1 NC_014560.1 F0F1 ATP synthase subunit B 1140984 9787842 HPSJM_05630 Helicobacter pylori SJM180 F0F1 ATP synthase subunit B YP_003929009.1 1140469 R 765962 CDS YP_003929010.1 308184877 9787843 complement(1140988..1141422) 1 NC_014560.1 COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B' 1141422 9787843 HPSJM_05635 Helicobacter pylori SJM180 F0F1 ATP synthase subunit B' YP_003929010.1 1140988 R 765962 CDS YP_003929011.1 308184878 9787844 complement(1141527..1142399) 1 NC_014560.1 COG1475 Predicted transcriptional regulators; plasmid replication-partition related protein 1142399 9787844 HPSJM_05640 Helicobacter pylori SJM180 plasmid replication-partition related protein YP_003929011.1 1141527 R 765962 CDS YP_003929012.1 308184879 9787845 complement(1142403..1143197) 1 NC_014560.1 COG1192 ATPases involved in chromosome partitioning; chromosome partitioning protein 1143197 9787845 HPSJM_05645 Helicobacter pylori SJM180 chromosome partitioning protein YP_003929012.1 1142403 R 765962 CDS YP_003929013.1 308184880 9787846 complement(1143200..1143838) 1 NC_014560.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase 1143838 9787846 HPSJM_05650 Helicobacter pylori SJM180 biotin--protein ligase YP_003929013.1 1143200 R 765962 CDS YP_003929014.1 308184881 9787847 complement(1143835..1144746) 1 NC_014560.1 COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1144746 fmt 9787847 fmt Helicobacter pylori SJM180 methionyl-tRNA formyltransferase YP_003929014.1 1143835 R 765962 CDS YP_003929015.1 308184882 9787848 complement(1144758..1147343) 1 NC_014560.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ATPase 1147343 9787848 HPSJM_05660 Helicobacter pylori SJM180 ATPase YP_003929015.1 1144758 R 765962 CDS YP_003929016.1 308184883 9787849 complement(1147382..1148683) 1 NC_014560.1 COG4487 Uncharacterized protein conserved in bacteria; hypothetical protein 1148683 9787849 HPSJM_05665 Helicobacter pylori SJM180 hypothetical protein YP_003929016.1 1147382 R 765962 CDS YP_003929017.1 308184884 9787850 1148852..1149001 1 NC_014560.1 hypothetical protein 1149001 9787850 HPSJM_05670 Helicobacter pylori SJM180 hypothetical protein YP_003929017.1 1148852 D 765962 CDS YP_003929018.1 308184885 9787851 1149397..1149558 1 NC_014560.1 hypothetical protein 1149558 9787851 HPSJM_05675 Helicobacter pylori SJM180 hypothetical protein YP_003929018.1 1149397 D 765962 CDS YP_003929019.1 308184886 9787853 complement(1151812..1151922) 1 NC_014560.1 hypothetical protein 1151922 9787853 HPSJM_05680 Helicobacter pylori SJM180 hypothetical protein YP_003929019.1 1151812 R 765962 CDS YP_003929020.1 308184887 9787854 1153142..1153285 1 NC_014560.1 hypothetical protein 1153285 9787854 HPSJM_05695 Helicobacter pylori SJM180 hypothetical protein YP_003929020.1 1153142 D 765962 CDS YP_003929021.1 308184888 9787855 complement(1153469..1153825) 1 NC_014560.1 COG0335 Ribosomal protein L19; 50S ribosomal protein L19 1153825 rplS 9787855 rplS Helicobacter pylori SJM180 50S ribosomal protein L19 YP_003929021.1 1153469 R 765962 CDS YP_003929022.1 308184889 9787856 complement(1153847..1154536) 1 NC_014560.1 COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 1154536 trmD 9787856 trmD Helicobacter pylori SJM180 tRNA (guanine-N(1)-)-methyltransferase YP_003929022.1 1153847 R 765962 CDS YP_003929023.1 308184890 9787857 complement(1154537..1155091) 1 NC_014560.1 COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM 1155091 rimM 9787857 rimM Helicobacter pylori SJM180 16S rRNA-processing protein RimM YP_003929023.1 1154537 R 765962 CDS YP_003929024.1 308184891 9787858 complement(1155092..1155439) 1 NC_014560.1 COG1837 Predicted RNA-binding protein (contains KH domain); hypothetical protein 1155439 9787858 HPSJM_05715 Helicobacter pylori SJM180 hypothetical protein YP_003929024.1 1155092 R 765962 CDS YP_003929025.1 308184892 9787859 complement(1155456..1155686) 1 NC_014560.1 COG0228 Ribosomal protein S16; 30S ribosomal protein S16 1155686 rpsP 9787859 rpsP Helicobacter pylori SJM180 30S ribosomal protein S16 YP_003929025.1 1155456 R 765962 CDS YP_003929026.1 308184893 9787860 complement(1155760..1157106) 1 NC_014560.1 COG0541 Signal recognition particle GTPase; signal recognition particle protein 1157106 9787860 HPSJM_05725 Helicobacter pylori SJM180 signal recognition particle protein YP_003929026.1 1155760 R 765962 CDS YP_003929027.1 308184894 9787861 complement(1157121..1159739) 1 NC_014560.1 COG0525 Valyl-tRNA synthetase; valyl-tRNA synthetase 1159739 valS 9787861 valS Helicobacter pylori SJM180 valyl-tRNA synthetase YP_003929027.1 1157121 R 765962 CDS YP_003929028.1 308184895 9787862 1159877..1160284 1 NC_014560.1 COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1160284 9787862 HPSJM_05735 Helicobacter pylori SJM180 flagellar assembly protein FliW YP_003929028.1 1159877 D 765962 CDS YP_003929029.1 308184896 9787863 1160296..1161357 1 NC_014560.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1161357 murG 9787863 murG Helicobacter pylori SJM180 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_003929029.1 1160296 D 765962 CDS YP_003929030.1 308184897 9787864 1161466..1163556 1 NC_014560.1 outer membrane protein HopI 1163556 9787864 HPSJM_05745 Helicobacter pylori SJM180 outer membrane protein HopI YP_003929030.1 1161466 D 765962 CDS YP_003929031.1 308184898 9787865 1163579..1167292 1 NC_014560.1 outer membrane protein HopL 1167292 9787865 HPSJM_05750 Helicobacter pylori SJM180 outer membrane protein HopL YP_003929031.1 1163579 D 765962 CDS YP_003929032.1 308184899 9787866 1167305..1168078 1 NC_014560.1 COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1168078 9787866 HPSJM_05755 Helicobacter pylori SJM180 pyrroline-5-carboxylate reductase YP_003929032.1 1167305 D 765962 CDS YP_003929033.1 308184900 9787867 1168105..1168638 1 NC_014560.1 COG2184 Protein involved in cell division; cell filamentation protein 1168638 9787867 HPSJM_05760 Helicobacter pylori SJM180 cell filamentation protein YP_003929033.1 1168105 D 765962 CDS YP_003929034.1 308184901 9787868 complement(1168883..1169305) 1 NC_014560.1 COG0319 Predicted metal-dependent hydrolase; putative metalloprotease 1169305 9787868 HPSJM_05765 Helicobacter pylori SJM180 putative metalloprotease YP_003929034.1 1168883 R 765962 CDS YP_003929035.1 308184902 9787869 complement(1169361..1169855) 1 NC_014560.1 COG0716 Flavodoxins; flavodoxin FldA 1169855 9787869 HPSJM_05770 Helicobacter pylori SJM180 flavodoxin FldA YP_003929035.1 1169361 R 765962 CDS YP_003929036.1 308184903 9787870 complement(1169946..1170527) 1 NC_014560.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1170527 9787870 HPSJM_05775 Helicobacter pylori SJM180 hypothetical protein YP_003929036.1 1169946 R 765962 CDS YP_003929037.1 308184904 9787871 1170650..1170847 1 NC_014560.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation; cation transport subunit forcbb3-type oxidase 1170847 9787871 HPSJM_05780 Helicobacter pylori SJM180 cation transport subunit forcbb3-type oxidase YP_003929037.1 1170650 D 765962 CDS YP_003929038.1 308184905 9787872 1170875..1171849 1 NC_014560.1 COG0492 Thioredoxin reductase; thioredoxin reductase 1171849 9787872 HPSJM_05785 Helicobacter pylori SJM180 thioredoxin reductase YP_003929038.1 1170875 D 765962 CDS YP_003929039.1 308184906 9787873 complement(1171857..1173017) 1 NC_014560.1 COG0477 Permeases of the major facilitator superfamily; tetracycline resistance proteintet A (P ) 1173017 9787873 HPSJM_05790 Helicobacter pylori SJM180 tetracycline resistance proteintet A (P ) YP_003929039.1 1171857 R 765962 CDS YP_003929040.1 308184907 9787874 1173081..1174718 1 NC_014560.1 COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1174718 pgi 9787874 pgi Helicobacter pylori SJM180 glucose-6-phosphate isomerase YP_003929040.1 1173081 D 765962 CDS YP_003929041.1 308184908 9787875 1175026..1176441 1 NC_014560.1 Outer membrane protein HofH; putative signal peptide 1176441 9787875 HPSJM_05800 Helicobacter pylori SJM180 Outer membrane protein HofH; putative signal peptide YP_003929041.1 1175026 D 765962 CDS YP_003929042.1 308184909 9787876 1176747..1176851 1 NC_014560.1 hypothetical protein 1176851 9787876 HPSJM_05805 Helicobacter pylori SJM180 hypothetical protein YP_003929042.1 1176747 D 765962 CDS YP_003929043.1 308184910 9787877 complement(1176960..1179023) 1 NC_014560.1 COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein 1179023 9787877 HPSJM_05810 Helicobacter pylori SJM180 carbon starvation protein YP_003929043.1 1176960 R 765962 CDS YP_003929044.1 308184911 9787878 1179234..1179887 1 NC_014560.1 COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein 1179887 9787878 HPSJM_05815 Helicobacter pylori SJM180 glutamine ABC transporter, permease protein YP_003929044.1 1179234 D 765962 CDS YP_003929045.1 308184912 9787879 1179890..1180561 1 NC_014560.1 COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein (glnP) 1180561 9787879 HPSJM_05820 Helicobacter pylori SJM180 glutamine ABC transporter, permease protein (glnP) YP_003929045.1 1179890 D 765962 CDS YP_003929046.1 308184913 9787880 1180563..1181309 1 NC_014560.1 COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter, ATP-binding protein (glnQ) 1181309 9787880 HPSJM_05825 Helicobacter pylori SJM180 glutamine ABC transporter, ATP-binding protein (glnQ) YP_003929046.1 1180563 D 765962 CDS YP_003929047.1 308184914 9787881 1181358..1182191 1 NC_014560.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter periplasmic glutamine-binding protein 1182191 9787881 HPSJM_05830 Helicobacter pylori SJM180 glutamine ABC transporter periplasmic glutamine-binding protein YP_003929047.1 1181358 D 765962 CDS YP_003929048.1 308184915 9787882 1182313..1182864 1 NC_014560.1 hypothetical protein 1182864 9787882 HPSJM_05835 Helicobacter pylori SJM180 hypothetical protein YP_003929048.1 1182313 D 765962 CDS YP_003929049.1 308184916 9787883 complement(1183136..1184359) 1 NC_014560.1 COG0738 Fucose permease; glucose/galactose transporter 1184359 9787883 HPSJM_05840 Helicobacter pylori SJM180 glucose/galactose transporter YP_003929049.1 1183136 R 765962 CDS YP_003929050.1 308184917 9787884 complement(1184489..1185796) 1 NC_014560.1 COG2252 Permeases; hypothetical protein 1185796 9787884 HPSJM_05845 Helicobacter pylori SJM180 hypothetical protein YP_003929050.1 1184489 R 765962 CDS YP_003929051.1 308184918 9787885 1185897..1186103 1 NC_014560.1 hypothetical protein 1186103 9787885 HPSJM_05850 Helicobacter pylori SJM180 hypothetical protein YP_003929051.1 1185897 D 765962 CDS YP_003929052.1 308184919 9787886 1186106..1186228 1 NC_014560.1 hypothetical protein 1186228 9787886 HPSJM_05855 Helicobacter pylori SJM180 hypothetical protein YP_003929052.1 1186106 D 765962 CDS YP_003929053.1 308184920 9787887 complement(1186248..1188170) 1 NC_014560.1 outer membrane protein 1188170 9787887 HPSJM_05860 Helicobacter pylori SJM180 outer membrane protein YP_003929053.1 1186248 R 765962 CDS YP_003929054.1 308184921 9787888 1188414..1188506 1 NC_014560.1 hypothetical protein 1188506 9787888 HPSJM_05865 Helicobacter pylori SJM180 hypothetical protein YP_003929054.1 1188414 D 765962 CDS YP_003929055.1 308184922 9787889 complement(1188651..1188749) 1 NC_014560.1 hypothetical protein 1188749 9787889 HPSJM_05870 Helicobacter pylori SJM180 hypothetical protein YP_003929055.1 1188651 R 765962 CDS YP_003929056.1 308184923 9787890 complement(1189005..1189706) 1 NC_014560.1 COG0813 Purine-nucleoside phosphorylase; purine-nucleoside phosphorylase 1189706 9787890 HPSJM_05875 Helicobacter pylori SJM180 purine-nucleoside phosphorylase YP_003929056.1 1189005 R 765962 CDS YP_003929057.1 308184924 9787891 complement(1189703..1190944) 1 NC_014560.1 COG1015 Phosphopentomutase; phosphopentomutase 1190944 9787891 HPSJM_05880 Helicobacter pylori SJM180 phosphopentomutase YP_003929057.1 1189703 R 765962 CDS YP_003929058.1 308184925 9787892 complement(1190956..1192212) 1 NC_014560.1 COG1972 Nucleoside permease; pyrimidine nucleoside transport protein (nupC) 1192212 9787892 HPSJM_05885 Helicobacter pylori SJM180 pyrimidine nucleoside transport protein (nupC) YP_003929058.1 1190956 R 765962 CDS YP_003929059.1 308184926 9787894 complement(1192500..1192604) 1 NC_014560.1 hypothetical protein 1192604 9787894 HPSJM_05890 Helicobacter pylori SJM180 hypothetical protein YP_003929059.1 1192500 R 765962 CDS YP_003929060.1 308184927 9787895 1192528..1193859 1 NC_014560.1 COG0477 Permeases of the major facilitator superfamily; multidrug-efflux transporter 1193859 9787895 HPSJM_05895 Helicobacter pylori SJM180 multidrug-efflux transporter YP_003929060.1 1192528 D 765962 CDS YP_003929061.1 308184928 9787896 1193878..1194639 1 NC_014560.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; putative PP-loop family ATPase 1194639 9787896 HPSJM_05900 Helicobacter pylori SJM180 putative PP-loop family ATPase YP_003929061.1 1193878 D 765962 CDS YP_003929062.1 308184929 9787897 complement(1194648..1195799) 1 NC_014560.1 COG0475 Kef-type K+ transport systems, membrane components; Na+/H+ antiporter 1195799 9787897 HPSJM_05905 Helicobacter pylori SJM180 Na+/H+ antiporter YP_003929062.1 1194648 R 765962 CDS YP_003929063.1 308184930 9787898 complement(1195825..1197204) 1 NC_014560.1 COG0534 Na+-driven multidrug efflux pump; hypothetical protein 1197204 9787898 HPSJM_05910 Helicobacter pylori SJM180 hypothetical protein YP_003929063.1 1195825 R 765962 CDS YP_003929064.1 308184931 9787899 1197178..1197315 1 NC_014560.1 hypothetical protein 1197315 9787899 HPSJM_05915 Helicobacter pylori SJM180 hypothetical protein YP_003929064.1 1197178 D 765962 CDS YP_003929065.1 308184932 9787900 complement(1197374..1198549) 1 NC_014560.1 COG2814 Arabinose efflux permease; sugar efflux transporter 1198549 9787900 HPSJM_05920 Helicobacter pylori SJM180 sugar efflux transporter YP_003929065.1 1197374 R 765962 CDS YP_003929066.1 308184933 9787901 1198812..1199555 1 NC_014560.1 COG3338 Carbonic anhydrase; Alpha-carbonic anhydrase; putative signal peptide 1199555 9787901 HPSJM_05925 Helicobacter pylori SJM180 Alpha-carbonic anhydrase; putative signal peptide YP_003929066.1 1198812 D 765962 CDS YP_003929067.1 308184934 9787902 complement(1199786..1200874) 1 NC_014560.1 hypothetical protein 1200874 9787902 HPSJM_05930 Helicobacter pylori SJM180 hypothetical protein YP_003929067.1 1199786 R 765962 CDS YP_003929068.1 308184935 9787903 complement(1201133..1201291) 1 NC_014560.1 hypothetical protein 1201291 9787903 HPSJM_05935 Helicobacter pylori SJM180 hypothetical protein YP_003929068.1 1201133 R 765962 CDS YP_003929069.1 308184936 9787904 complement(1201334..1202293) 1 NC_014560.1 hypothetical protein 1202293 9787904 HPSJM_05940 Helicobacter pylori SJM180 hypothetical protein YP_003929069.1 1201334 R 765962 CDS YP_003929070.1 308184937 9787905 complement(1202750..1203790) 1 NC_014560.1 COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 1203790 9787905 HPSJM_05945 Helicobacter pylori SJM180 aspartate-semialdehyde dehydrogenase YP_003929070.1 1202750 R 765962 CDS YP_003929071.1 308184938 9787906 complement(1203777..1205105) 1 NC_014560.1 COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase 1205105 hisS 9787906 hisS Helicobacter pylori SJM180 histidyl-tRNA synthetase YP_003929071.1 1203777 R 765962 CDS YP_003929072.1 308184939 9787907 1205167..1206216 1 NC_014560.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase II 1206216 9787907 HPSJM_05955 Helicobacter pylori SJM180 ADP-heptose--LPS heptosyltransferase II YP_003929072.1 1205167 D 765962 CDS YP_003929073.1 308184940 9787908 complement(1206363..1206743) 1 NC_014560.1 hypothetical protein 1206743 9787908 HPSJM_05960 Helicobacter pylori SJM180 hypothetical protein YP_003929073.1 1206363 R 765962 CDS YP_003929074.1 308184941 9787909 1206961..1207950 1 NC_014560.1 COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo-ketoreductase, putative 1207950 9787909 HPSJM_05965 Helicobacter pylori SJM180 aldo-ketoreductase, putative YP_003929074.1 1206961 D 765962 CDS YP_003929075.1 308184942 9787910 complement(1208508..1210586) 1 NC_014560.1 COG0480 Translation elongation factors (GTPases); elongation factor G 1210586 9787910 HPSJM_05970 Helicobacter pylori SJM180 elongation factor G YP_003929075.1 1208508 R 765962 CDS YP_003929076.1 308184943 9787911 complement(1210598..1211065) 1 NC_014560.1 COG0049 Ribosomal protein S7; 30S ribosomal protein S7 1211065 9787911 HPSJM_05975 Helicobacter pylori SJM180 30S ribosomal protein S7 YP_003929076.1 1210598 R 765962 CDS YP_003929077.1 308184944 9787912 complement(1211081..1211488) 1 NC_014560.1 COG0048 Ribosomal protein S12; 30S ribosomal protein S12 1211488 rpsL 9787912 rpsL Helicobacter pylori SJM180 30S ribosomal protein S12 YP_003929077.1 1211081 R 765962 CDS YP_003929078.1 308184945 9787913 complement(1211577..1220249) 1 NC_014560.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta/beta' 1220249 9787913 HPSJM_05985 Helicobacter pylori SJM180 DNA-directed RNA polymerase subunit beta/beta' YP_003929078.1 1211577 R 765962 CDS YP_003929079.1 308184946 9787914 complement(1220471..1220848) 1 NC_014560.1 COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 1220848 rplL 9787914 rplL Helicobacter pylori SJM180 50S ribosomal protein L7/L12 YP_003929079.1 1220471 R 765962 CDS YP_003929080.1 308184947 9787915 complement(1220893..1221387) 1 NC_014560.1 COG0244 Ribosomal protein L10; 50S ribosomal protein L10 1221387 rplJ 9787915 rplJ Helicobacter pylori SJM180 50S ribosomal protein L10 YP_003929080.1 1220893 R 765962 CDS YP_003929081.1 308184948 9787916 complement(1221498..1222202) 1 NC_014560.1 COG0081 Ribosomal protein L1; 50S ribosomal protein L1 1222202 rplA 9787916 rplA Helicobacter pylori SJM180 50S ribosomal protein L1 YP_003929081.1 1221498 R 765962 CDS YP_003929082.1 308184949 9787917 complement(1222254..1222679) 1 NC_014560.1 COG0080 Ribosomal protein L11; 50S ribosomal protein L11 1222679 rplK 9787917 rplK Helicobacter pylori SJM180 50S ribosomal protein L11 YP_003929082.1 1222254 R 765962 CDS YP_003929083.1 308184950 9787918 complement(1222697..1223224) 1 NC_014560.1 COG0250 Transcription antiterminator; transcription antitermination protein NusG 1223224 nusG 9787918 nusG Helicobacter pylori SJM180 transcription antitermination protein NusG YP_003929083.1 1222697 R 765962 CDS YP_003929084.1 308184951 9787919 complement(1223255..1223434) 1 NC_014560.1 preprotein translocase subunit SecE 1223434 secE 9787919 secE Helicobacter pylori SJM180 preprotein translocase subunit SecE YP_003929084.1 1223255 R 765962 CDS YP_003929085.1 308184952 9787921 complement(1223692..1223850) 1 NC_014560.1 COG0267 Ribosomal protein L33; 50S ribosomal protein L33 1223850 rpmG 9787921 rpmG Helicobacter pylori SJM180 50S ribosomal protein L33 YP_003929085.1 1223692 R 765962 CDS YP_003929086.1 308184953 9787922 complement(1223884..1225083) 1 NC_014560.1 COG0050 GTPases - translation elongation factors; elongation factor Tu 1225083 9787922 HPSJM_06025 Helicobacter pylori SJM180 elongation factor Tu YP_003929086.1 1223884 R 765962 CDS YP_003929087.1 308184954 9787927 1225781..1227517 1 NC_014560.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter ATPase 1227517 9787927 HPSJM_06030 Helicobacter pylori SJM180 ABC transporter ATPase YP_003929087.1 1225781 D 765962 CDS YP_003929088.1 308184955 9787928 complement(1227526..1228194) 1 NC_014560.1 COG0546 Predicted phosphatases; hypothetical protein 1228194 9787928 HPSJM_06035 Helicobacter pylori SJM180 hypothetical protein YP_003929088.1 1227526 R 765962 CDS YP_003929089.1 308184956 9787929 complement(1228298..1229287) 1 NC_014560.1 COG3392 Adenine-specific DNA methylase; adenine-specific methyltransferase 1229287 9787929 HPSJM_06040 Helicobacter pylori SJM180 adenine-specific methyltransferase YP_003929089.1 1228298 R 765962 CDS YP_003929090.1 308184957 9787930 complement(1229296..1229982) 1 NC_014560.1 ulcer-associated gene restriction endonuclease (iceA) 1229982 9787930 HPSJM_06045 Helicobacter pylori SJM180 ulcer-associated gene restriction endonuclease (iceA) YP_003929090.1 1229296 R 765962 CDS YP_003929091.1 308184958 9787931 complement(1230034..1230549) 1 NC_014560.1 COG1045 Serine acetyltransferase; serine acetyltransferase 1230549 9787931 HPSJM_06050 Helicobacter pylori SJM180 serine acetyltransferase YP_003929091.1 1230034 R 765962 CDS YP_003929092.1 308184959 9787934 complement(1231126..1231443) 1 NC_014560.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C 1231443 9787934 HPSJM_06055 Helicobacter pylori SJM180 F0F1 ATP synthase subunit C YP_003929092.1 1231126 R 765962 CDS YP_003929093.1 308184960 9787935 complement(1231576..1233642) 1 NC_014560.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 1233642 9787935 HPSJM_06060 Helicobacter pylori SJM180 polynucleotide phosphorylase/polyadenylase YP_003929093.1 1231576 R 765962 CDS YP_003929094.1 308184961 9787936 complement(1233645..1234349) 1 NC_014560.1 COG1926 Predicted phosphoribosyltransferases; hypothetical protein 1234349 9787936 HPSJM_06065 Helicobacter pylori SJM180 hypothetical protein YP_003929094.1 1233645 R 765962 CDS YP_003929095.1 308184962 9787937 complement(1234364..1236625) 1 NC_014560.1 COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein 1236625 9787937 HPSJM_06070 Helicobacter pylori SJM180 organic solvent tolerance protein YP_003929095.1 1234364 R 765962 CDS YP_003929096.1 308184963 9787938 complement(1236628..1237107) 1 NC_014560.1 hypothetical protein 1237107 9787938 HPSJM_06075 Helicobacter pylori SJM180 hypothetical protein YP_003929096.1 1236628 R 765962 CDS YP_003929097.1 308184964 9787939 complement(1237156..1238430) 1 NC_014560.1 COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 1238430 9787939 HPSJM_06080 Helicobacter pylori SJM180 phosphoribosylamine--glycine ligase YP_003929097.1 1237156 R 765962 CDS YP_003929098.1 308184965 9787940 complement(1238743..1239429) 1 NC_014560.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 1239429 9787940 HPSJM_06085 Helicobacter pylori SJM180 ABC transporter, ATP-binding protein YP_003929098.1 1238743 R 765962 CDS YP_003929099.1 308184966 9787941 complement(1239423..1240127) 1 NC_014560.1 COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 1240127 9787941 HPSJM_06090 Helicobacter pylori SJM180 undecaprenyl pyrophosphate synthase YP_003929099.1 1239423 R 765962 CDS YP_003929100.1 308184967 9787942 complement(1240167..1243007) 1 NC_014560.1 COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 1243007 9787942 HPSJM_06095 Helicobacter pylori SJM180 D-lactate dehydrogenase YP_003929100.1 1240167 R 765962 CDS YP_003929101.1 308184968 9787943 1243079..1243417 1 NC_014560.1 COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 1243417 9787943 HPSJM_06100 Helicobacter pylori SJM180 hypothetical protein YP_003929101.1 1243079 D 765962 CDS YP_003929102.1 308184969 9787944 1243420..1244100 1 NC_014560.1 COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 1244100 hemD 9787944 hemD Helicobacter pylori SJM180 uroporphyrinogen-III synthase YP_003929102.1 1243420 D 765962 CDS YP_003929103.1 308184970 9787945 1244147..1244539 1 NC_014560.1 COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB 1244539 9787945 HPSJM_06110 Helicobacter pylori SJM180 camphor resistance protein CrcB YP_003929103.1 1244147 D 765962 CDS YP_003929104.1 308184971 9787946 complement(1244585..1245622) 1 NC_014560.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 1245622 9787946 HPSJM_06115 Helicobacter pylori SJM180 coproporphyrinogen III oxidase YP_003929104.1 1244585 R 765962 CDS YP_003929105.1 308184972 9787947 1245718..1246008 1 NC_014560.1 COG2863 Cytochrome c553; cytochrome c-553 1246008 9787947 HPSJM_06120 Helicobacter pylori SJM180 cytochrome c-553 YP_003929105.1 1245718 D 765962 CDS YP_003929106.1 308184973 9787948 complement(1246001..1246093) 1 NC_014560.1 hypothetical protein 1246093 9787948 HPSJM_06125 Helicobacter pylori SJM180 hypothetical protein YP_003929106.1 1246001 R 765962 CDS YP_003929107.1 308184974 9787949 1246168..1246635 1 NC_014560.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dinucleoside polyphosphate hydrolase 1246635 9787949 HPSJM_06130 Helicobacter pylori SJM180 dinucleoside polyphosphate hydrolase YP_003929107.1 1246168 D 765962 CDS YP_003929108.1 308184975 9787950 1246637..1247854 1 NC_014560.1 COG0527 Aspartokinases; aspartate kinase 1247854 9787950 HPSJM_06135 Helicobacter pylori SJM180 aspartate kinase YP_003929108.1 1246637 D 765962 CDS YP_003929109.1 308184976 9787951 1247851..1248393 1 NC_014560.1 hypothetical protein 1248393 9787951 HPSJM_06140 Helicobacter pylori SJM180 hypothetical protein YP_003929109.1 1247851 D 765962 CDS YP_003929110.1 308184977 9787952 1248390..1249046 1 NC_014560.1 COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1249046 9787952 HPSJM_06145 Helicobacter pylori SJM180 DNA polymerase III subunit delta' YP_003929110.1 1248390 D 765962 CDS YP_003929111.1 308184978 9787953 1249043..1250185 1 NC_014560.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 1250185 9787953 HPSJM_06150 Helicobacter pylori SJM180 dihydropteroate synthase YP_003929111.1 1249043 D 765962 CDS YP_003929112.1 308184979 9787954 complement(1250279..1250740) 1 NC_014560.1 hypothetical protein 1250740 9787954 HPSJM_06155 Helicobacter pylori SJM180 hypothetical protein YP_003929112.1 1250279 R 765962 CDS YP_003929113.1 308184980 9787955 1251106..1252002 1 NC_014560.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 1252002 9787955 HPSJM_06160 Helicobacter pylori SJM180 hypothetical protein YP_003929113.1 1251106 D 765962 CDS YP_003929114.1 308184981 9787956 1252006..1253253 1 NC_014560.1 hypothetical protein 1253253 9787956 HPSJM_06165 Helicobacter pylori SJM180 hypothetical protein YP_003929114.1 1252006 D 765962 CDS YP_003929115.1 308184982 9787957 1253332..1253883 1 NC_014560.1 COG2952 Uncharacterized protein conserved in bacteria; hypothetical protein 1253883 9787957 HPSJM_06170 Helicobacter pylori SJM180 hypothetical protein YP_003929115.1 1253332 D 765962 CDS YP_003929116.1 308184983 9787958 1253883..1255010 1 NC_014560.1 COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 1255010 9787958 HPSJM_06175 Helicobacter pylori SJM180 carbamoyl phosphate synthase small subunit YP_003929116.1 1253883 D 765962 CDS YP_003929117.1 308184984 9787959 1255175..1256179 1 NC_014560.1 COG0388 Predicted amidohydrolase; formamidase 1256179 amiF 9787959 amiF Helicobacter pylori SJM180 formamidase YP_003929117.1 1255175 D 765962 CDS YP_003929118.1 308184985 9787960 complement(1256680..1257141) 1 NC_014560.1 hypothetical protein 1257141 9787960 HPSJM_06185 Helicobacter pylori SJM180 hypothetical protein YP_003929118.1 1256680 R 765962 CDS YP_003929119.1 308184986 9787961 complement(1257248..1257820) 1 NC_014560.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 1257820 9787961 HPSJM_06190 Helicobacter pylori SJM180 Maf-like protein YP_003929119.1 1257248 R 765962 CDS YP_003929120.1 308184987 9787962 complement(1257822..1260365) 1 NC_014560.1 COG0013 Alanyl-tRNA synthetase; alanyl-tRNA synthetase 1260365 alaS 9787962 alaS Helicobacter pylori SJM180 alanyl-tRNA synthetase YP_003929120.1 1257822 R 765962 CDS YP_003929121.1 308184988 9787963 1260485..1260715 1 NC_014560.1 COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 1260715 9787963 HPSJM_06200 Helicobacter pylori SJM180 hypothetical protein YP_003929121.1 1260485 D 765962 CDS YP_003929122.1 308184989 9787964 complement(1261039..1261194) 1 NC_014560.1 hypothetical protein 1261194 9787964 HPSJM_06205 Helicobacter pylori SJM180 hypothetical protein YP_003929122.1 1261039 R 765962 CDS YP_003929123.1 308184990 9787965 complement(1261270..1263408) 1 NC_014560.1 outer membrane protein HopU 1263408 9787965 HPSJM_06210 Helicobacter pylori SJM180 outer membrane protein HopU YP_003929123.1 1261270 R 765962 CDS YP_003929124.1 308184991 9787966 complement(1263970..1264227) 1 NC_014560.1 COG0238 Ribosomal protein S18; 30S ribosomal protein S18 1264227 rpsR 9787966 rpsR Helicobacter pylori SJM180 30S ribosomal protein S18 YP_003929124.1 1263970 R 765962 CDS YP_003929125.1 308184992 9787967 complement(1264250..1264795) 1 NC_014560.1 COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 1264795 9787967 HPSJM_06220 Helicobacter pylori SJM180 single-stranded DNA-binding protein YP_003929125.1 1264250 R 765962 CDS YP_003929126.1 308184993 9787968 complement(1264805..1265233) 1 NC_014560.1 COG0360 Ribosomal protein S6; 30S ribosomal protein S6 1265233 rpsF 9787968 rpsF Helicobacter pylori SJM180 30S ribosomal protein S6 YP_003929126.1 1264805 R 765962 CDS YP_003929127.1 308184994 9787969 1265225..1265389 1 NC_014560.1 hypothetical protein 1265389 9787969 HPSJM_06230 Helicobacter pylori SJM180 hypothetical protein YP_003929127.1 1265225 D 765962 CDS YP_003929128.1 308184995 9787970 complement(1265386..1266408) 1 NC_014560.1 COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 1266408 9787970 HPSJM_06235 Helicobacter pylori SJM180 DNA polymerase III subunit delta YP_003929128.1 1265386 R 765962 CDS YP_003929129.1 308184996 9787971 complement(1266398..1268332) 1 NC_014560.1 COG0557 Exoribonuclease R; ribonuclease R 1268332 9787971 HPSJM_06240 Helicobacter pylori SJM180 ribonuclease R YP_003929129.1 1266398 R 765962 CDS YP_003929130.1 308184997 9787972 complement(1268332..1269123) 1 NC_014560.1 COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 1269123 aroE 9787972 aroE Helicobacter pylori SJM180 shikimate 5-dehydrogenase YP_003929130.1 1268332 R 765962 CDS YP_003929131.1 308184998 9787973 complement(1269131..1269706) 1 NC_014560.1 hypothetical protein 1269706 9787973 HPSJM_06250 Helicobacter pylori SJM180 hypothetical protein YP_003929131.1 1269131 R 765962 CDS YP_003929132.1 308184999 9787974 complement(1269727..1270773) 1 NC_014560.1 COG4174 ABC-type uncharacterized transport system, permease component; oligopeptide ABC transporter, permease protein 1270773 9787974 HPSJM_06255 Helicobacter pylori SJM180 oligopeptide ABC transporter, permease protein YP_003929132.1 1269727 R 765962 CDS YP_003929133.1 308185000 9787975 complement(1270770..1272551) 1 NC_014560.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein 1272551 9787975 HPSJM_06260 Helicobacter pylori SJM180 hypothetical protein YP_003929133.1 1270770 R 765962 CDS YP_003929134.1 308185001 9787976 complement(1272552..1273532) 1 NC_014560.1 COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 1273532 9787976 HPSJM_06265 Helicobacter pylori SJM180 tryptophanyl-tRNA synthetase YP_003929134.1 1272552 R 765962 CDS YP_003929135.1 308185002 9787977 complement(1273604..1274341) 1 NC_014560.1 COG0500 SAM-dependent methyltransferases; Biotin biosynthesis protein BioC 1274341 9787977 HPSJM_06270 Helicobacter pylori SJM180 Biotin biosynthesis protein BioC YP_003929135.1 1273604 R 765962 CDS YP_003929136.1 308185003 9787978 1274465..1275064 1 NC_014560.1 COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 1275064 secG 9787978 secG Helicobacter pylori SJM180 preprotein translocase subunit SecG YP_003929136.1 1274465 D 765962 CDS YP_003929137.1 308185004 9787979 1275064..1275621 1 NC_014560.1 COG0233 Ribosome recycling factor; ribosome recycling factor 1275621 frr 9787979 frr Helicobacter pylori SJM180 ribosome recycling factor YP_003929137.1 1275064 D 765962 CDS YP_003929138.1 308185005 9787980 1275625..1276230 1 NC_014560.1 COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 1276230 pyrE 9787980 pyrE Helicobacter pylori SJM180 orotate phosphoribosyltransferase YP_003929138.1 1275625 D 765962 CDS YP_003929139.1 308185006 9787981 1276220..1276684 1 NC_014560.1 COG1714 Predicted membrane protein/domain; hypothetical protein 1276684 9787981 HPSJM_06290 Helicobacter pylori SJM180 hypothetical protein YP_003929139.1 1276220 D 765962 CDS YP_003929140.1 308185007 9787982 1276681..1277370 1 NC_014560.1 COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1277370 9787982 HPSJM_06295 Helicobacter pylori SJM180 NAD-dependent deacetylase YP_003929140.1 1276681 D 765962 CDS YP_003929141.1 308185008 9787983 1277478..1277879 1 NC_014560.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH dehydrogenase subunit A 1277879 9787983 HPSJM_06300 Helicobacter pylori SJM180 NADH dehydrogenase subunit A YP_003929141.1 1277478 D 765962 CDS YP_003929142.1 308185009 9787984 1277879..1278358 1 NC_014560.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 1278358 9787984 HPSJM_06305 Helicobacter pylori SJM180 NADH dehydrogenase subunit B YP_003929142.1 1277879 D 765962 CDS YP_003929143.1 308185010 9787985 1278358..1279155 1 NC_014560.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH dehydrogenase subunit C 1279155 9787985 HPSJM_06310 Helicobacter pylori SJM180 NADH dehydrogenase subunit C YP_003929143.1 1278358 D 765962 CDS YP_003929144.1 308185011 9787986 1279157..1280386 1 NC_014560.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH dehydrogenase subunit D 1280386 9787986 HPSJM_06315 Helicobacter pylori SJM180 NADH dehydrogenase subunit D YP_003929144.1 1279157 D 765962 CDS YP_003929145.1 308185012 9787987 1280383..1280613 1 NC_014560.1 putative NADH oxidoreductase I 1280613 9787987 HPSJM_06320 Helicobacter pylori SJM180 putative NADH oxidoreductase I YP_003929145.1 1280383 D 765962 CDS YP_003929146.1 308185013 9787988 1280616..1281602 1 NC_014560.1 putative NADH oxidoreductase I 1281602 9787988 HPSJM_06325 Helicobacter pylori SJM180 putative NADH oxidoreductase I YP_003929146.1 1280616 D 765962 CDS YP_003929147.1 308185014 9787989 1281599..1284163 1 NC_014560.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 1284163 9787989 HPSJM_06330 Helicobacter pylori SJM180 NADH dehydrogenase subunit G YP_003929147.1 1281599 D 765962 CDS YP_003929148.1 308185015 9787990 1284160..1285149 1 NC_014560.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH dehydrogenase subunit H 1285149 9787990 HPSJM_06335 Helicobacter pylori SJM180 NADH dehydrogenase subunit H YP_003929148.1 1284160 D 765962 CDS YP_003929149.1 308185016 9787991 1285160..1285822 1 NC_014560.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 1285822 9787991 HPSJM_06340 Helicobacter pylori SJM180 NADH dehydrogenase subunit I YP_003929149.1 1285160 D 765962 CDS YP_003929150.1 308185017 9787992 1285815..1286363 1 NC_014560.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH dehydrogenase subunit J 1286363 9787992 HPSJM_06345 Helicobacter pylori SJM180 NADH dehydrogenase subunit J YP_003929150.1 1285815 D 765962 CDS YP_003929151.1 308185018 9787993 1286360..1286662 1 NC_014560.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH dehydrogenase subunit K 1286662 9787993 HPSJM_06350 Helicobacter pylori SJM180 NADH dehydrogenase subunit K YP_003929151.1 1286360 D 765962 CDS YP_003929152.1 308185019 9787994 1286665..1288503 1 NC_014560.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH dehydrogenase subunit L 1288503 9787994 HPSJM_06355 Helicobacter pylori SJM180 NADH dehydrogenase subunit L YP_003929152.1 1286665 D 765962 CDS YP_003929153.1 308185020 9787995 1288507..1290045 1 NC_014560.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M 1290045 9787995 HPSJM_06360 Helicobacter pylori SJM180 NADH dehydrogenase subunit M YP_003929153.1 1288507 D 765962 CDS YP_003929154.1 308185021 9787996 1290032..1291504 1 NC_014560.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH dehydrogenase subunit N 1291504 9787996 HPSJM_06365 Helicobacter pylori SJM180 NADH dehydrogenase subunit N YP_003929154.1 1290032 D 765962 CDS YP_003929155.1 308185022 9787997 1291494..1293899 1 NC_014560.1 COG1729 Uncharacterized protein conserved in bacteria; paralysed flagella protein 1293899 9787997 HPSJM_06370 Helicobacter pylori SJM180 paralysed flagella protein YP_003929155.1 1291494 D 765962 CDS YP_003929156.1 308185023 9787998 1293901..1295280 1 NC_014560.1 COG1109 Phosphomannomutase; phosphomannomutase 1295280 9787998 HPSJM_06375 Helicobacter pylori SJM180 phosphomannomutase YP_003929156.1 1293901 D 765962 CDS YP_003929157.1 308185024 9787999 1295489..1295737 1 NC_014560.1 hypothetical protein 1295737 9787999 HPSJM_06380 Helicobacter pylori SJM180 hypothetical protein YP_003929157.1 1295489 D 765962 CDS YP_003929158.1 308185025 9788000 1295770..1295925 1 NC_014560.1 hypothetical protein 1295925 9788000 HPSJM_06385 Helicobacter pylori SJM180 hypothetical protein YP_003929158.1 1295770 D 765962 CDS YP_003929159.1 308185026 9788001 1295930..1296151 1 NC_014560.1 hypothetical protein 1296151 9788001 HPSJM_06390 Helicobacter pylori SJM180 hypothetical protein YP_003929159.1 1295930 D 765962 CDS YP_003929160.1 308185027 9788002 1296121..1296582 1 NC_014560.1 COG4278 Uncharacterized conserved protein; hypothetical protein 1296582 9788002 HPSJM_06395 Helicobacter pylori SJM180 hypothetical protein YP_003929160.1 1296121 D 765962 CDS YP_003929161.1 308185028 9788003 complement(1296585..1296809) 1 NC_014560.1 thiamine pyrophosphokinase 1296809 9788003 HPSJM_06400 Helicobacter pylori SJM180 thiamine pyrophosphokinase YP_003929161.1 1296585 R 765962 CDS YP_003929162.1 308185029 9788004 complement(1297101..1297889) 1 NC_014560.1 COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1297889 trpA 9788004 trpA Helicobacter pylori SJM180 tryptophan synthase subunit alpha YP_003929162.1 1297101 R 765962 CDS YP_003929163.1 308185030 9788005 complement(1297891..1299066) 1 NC_014560.1 COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 1299066 9788005 HPSJM_06410 Helicobacter pylori SJM180 tryptophan synthase subunit beta YP_003929163.1 1297891 R 765962 CDS YP_003929164.1 308185031 9788006 complement(1299068..1300426) 1 NC_014560.1 COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1300426 9788006 HPSJM_06415 Helicobacter pylori SJM180 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_003929164.1 1299068 R 765962 CDS YP_003929165.1 308185032 9788007 complement(1300419..1301426) 1 NC_014560.1 COG0547 Anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 1301426 trpD 9788007 trpD Helicobacter pylori SJM180 anthranilate phosphoribosyltransferase YP_003929165.1 1300419 R 765962 CDS YP_003929166.1 308185033 9788008 complement(1301423..1302007) 1 NC_014560.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; anthranilate synthase component II 1302007 9788008 HPSJM_06425 Helicobacter pylori SJM180 anthranilate synthase component II YP_003929166.1 1301423 R 765962 CDS YP_003929167.1 308185034 9788009 complement(1302004..1303506) 1 NC_014560.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 1303506 9788009 HPSJM_06430 Helicobacter pylori SJM180 anthranilate synthase component I YP_003929167.1 1302004 R 765962 CDS YP_003929168.1 308185035 9788010 complement(1303737..1304795) 1 NC_014560.1 COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein 1304795 9788010 HPSJM_06435 Helicobacter pylori SJM180 hypothetical protein YP_003929168.1 1303737 R 765962 CDS YP_003929169.1 308185036 9788011 complement(1304863..1305555) 1 NC_014560.1 COG2503 Predicted secreted acid phosphatase; hypothetical protein 1305555 9788011 HPSJM_06440 Helicobacter pylori SJM180 hypothetical protein YP_003929169.1 1304863 R 765962 CDS YP_003929170.1 308185037 9788012 1305725..1306273 1 NC_014560.1 COG2353 Uncharacterized conserved protein; hypothetical protein 1306273 9788012 HPSJM_06445 Helicobacter pylori SJM180 hypothetical protein YP_003929170.1 1305725 D 765962 CDS YP_003929171.1 308185038 9788013 complement(1306337..1306990) 1 NC_014560.1 COG0819 Putative transcription activator; transcriptional regulator (tenA) 1306990 9788013 HPSJM_06450 Helicobacter pylori SJM180 transcriptional regulator (tenA) YP_003929171.1 1306337 R 765962 CDS YP_003929172.1 308185039 9788014 1307720..1308100 1 NC_014560.1 hypothetical protein 1308100 9788014 HPSJM_06455 Helicobacter pylori SJM180 hypothetical protein YP_003929172.1 1307720 D 765962 CDS YP_003929173.1 308185040 9788015 1308140..1308634 1 NC_014560.1 hypothetical protein 1308634 9788015 HPSJM_06460 Helicobacter pylori SJM180 hypothetical protein YP_003929173.1 1308140 D 765962 CDS YP_003929174.1 308185041 9788016 1308820..1309482 1 NC_014560.1 COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter 1309482 9788016 HPSJM_06465 Helicobacter pylori SJM180 nicotinamide mononucleotide transporter YP_003929174.1 1308820 D 765962 CDS YP_003929175.1 308185042 9788017 1309470..1310084 1 NC_014560.1 COG1564 Thiamine pyrophosphokinase; thiamine pyrophosphokinase 1310084 9788017 HPSJM_06470 Helicobacter pylori SJM180 thiamine pyrophosphokinase YP_003929175.1 1309470 D 765962 CDS YP_003929176.1 308185043 9788018 complement(1310618..1310749) 1 NC_014560.1 hypothetical protein 1310749 9788018 HPSJM_06475 Helicobacter pylori SJM180 hypothetical protein YP_003929176.1 1310618 R 765962 CDS YP_003929177.1 308185044 9788019 complement(1310746..1311096) 1 NC_014560.1 COG0203 Ribosomal protein L17; 50S ribosomal protein L17 1311096 rplQ 9788019 rplQ Helicobacter pylori SJM180 50S ribosomal protein L17 YP_003929177.1 1310746 R 765962 CDS YP_003929178.1 308185045 9788020 complement(1311096..1312130) 1 NC_014560.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha 1312130 9788020 HPSJM_06485 Helicobacter pylori SJM180 DNA-directed RNA polymerase subunit alpha YP_003929178.1 1311096 R 765962 CDS YP_003929179.1 308185046 9788021 complement(1312142..1312768) 1 NC_014560.1 COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 1312768 rpsD 9788021 rpsD Helicobacter pylori SJM180 30S ribosomal protein S4 YP_003929179.1 1312142 R 765962 CDS YP_003929180.1 308185047 9788022 complement(1312778..1313173) 1 NC_014560.1 COG0100 Ribosomal protein S11; 30S ribosomal protein S11 1313173 9788022 HPSJM_06495 Helicobacter pylori SJM180 30S ribosomal protein S11 YP_003929180.1 1312778 R 765962 CDS YP_003929181.1 308185048 9788023 complement(1313196..1313558) 1 NC_014560.1 COG0099 Ribosomal protein S13; 30S ribosomal protein S13 1313558 rpsM 9788023 rpsM Helicobacter pylori SJM180 30S ribosomal protein S13 YP_003929181.1 1313196 R 765962 CDS YP_003929182.1 308185049 9788024 complement(1313562..1313675) 1 NC_014560.1 COG0257 Ribosomal protein L36; hypothetical protein 1313675 9788024 HPSJM_06505 Helicobacter pylori SJM180 hypothetical protein YP_003929182.1 1313562 R 765962 CDS YP_003929183.1 308185050 9788025 complement(1313753..1313971) 1 NC_014560.1 COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 1313971 infA 9788025 infA Helicobacter pylori SJM180 translation initiation factor IF-1 YP_003929183.1 1313753 R 765962 CDS YP_003929184.1 308185051 9788026 complement(1313971..1314732) 1 NC_014560.1 COG0024 Methionine aminopeptidase; methionine aminopeptidase 1314732 9788026 HPSJM_06515 Helicobacter pylori SJM180 methionine aminopeptidase YP_003929184.1 1313971 R 765962 CDS YP_003929185.1 308185052 9788027 complement(1314732..1315994) 1 NC_014560.1 COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY 1315994 secY 9788027 secY Helicobacter pylori SJM180 preprotein translocase subunit SecY YP_003929185.1 1314732 R 765962 CDS YP_003929186.1 308185053 9788028 complement(1316037..1316438) 1 NC_014560.1 COG0200 Ribosomal protein L15; 50S ribosomal protein L15 1316438 rplO 9788028 rplO Helicobacter pylori SJM180 50S ribosomal protein L15 YP_003929186.1 1316037 R 765962 CDS YP_003929187.1 308185054 9788029 complement(1316456..1316899) 1 NC_014560.1 COG0098 Ribosomal protein S5; 30S ribosomal protein S5 1316899 rpsE 9788029 rpsE Helicobacter pylori SJM180 30S ribosomal protein S5 YP_003929187.1 1316456 R 765962 CDS YP_003929188.1 308185055 9788030 complement(1316914..1317270) 1 NC_014560.1 COG0256 Ribosomal protein L18; 50S ribosomal protein L18 1317270 rplR 9788030 rplR Helicobacter pylori SJM180 50S ribosomal protein L18 YP_003929188.1 1316914 R 765962 CDS YP_003929189.1 308185056 9788031 complement(1317284..1317820) 1 NC_014560.1 COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 1317820 rplF 9788031 rplF Helicobacter pylori SJM180 50S ribosomal protein L6 YP_003929189.1 1317284 R 765962 CDS YP_003929190.1 308185057 9788032 complement(1317831..1318226) 1 NC_014560.1 COG0096 Ribosomal protein S8; 30S ribosomal protein S8 1318226 rpsH 9788032 rpsH Helicobacter pylori SJM180 30S ribosomal protein S8 YP_003929190.1 1317831 R 765962 CDS YP_003929191.1 308185058 9788033 complement(1318236..1318421) 1 NC_014560.1 COG0199 Ribosomal protein S14; 30S ribosomal protein S14 1318421 rpsN 9788033 rpsN Helicobacter pylori SJM180 30S ribosomal protein S14 YP_003929191.1 1318236 R 765962 CDS YP_003929192.1 308185059 9788034 complement(1318431..1318976) 1 NC_014560.1 COG0094 Ribosomal protein L5; 50S ribosomal protein L5 1318976 rplE 9788034 rplE Helicobacter pylori SJM180 50S ribosomal protein L5 YP_003929192.1 1318431 R 765962 CDS YP_003929193.1 308185060 9788035 complement(1318989..1319210) 1 NC_014560.1 COG0198 Ribosomal protein L24; 50S ribosomal protein L24 1319210 rplX 9788035 rplX Helicobacter pylori SJM180 50S ribosomal protein L24 YP_003929193.1 1318989 R 765962 CDS YP_003929194.1 308185061 9788036 complement(1319210..1319578) 1 NC_014560.1 COG0093 Ribosomal protein L14; 50S ribosomal protein L14 1319578 rplN 9788036 rplN Helicobacter pylori SJM180 50S ribosomal protein L14 YP_003929194.1 1319210 R 765962 CDS YP_003929195.1 308185062 9788037 complement(1319581..1319841) 1 NC_014560.1 COG0186 Ribosomal protein S17; 30S ribosomal protein S17 1319841 rpsQ 9788037 rpsQ Helicobacter pylori SJM180 30S ribosomal protein S17 YP_003929195.1 1319581 R 765962 CDS YP_003929196.1 308185063 9788038 complement(1319855..1320055) 1 NC_014560.1 COG0255 Ribosomal protein L29; 50S ribosomal protein L29 1320055 9788038 HPSJM_06575 Helicobacter pylori SJM180 50S ribosomal protein L29 YP_003929196.1 1319855 R 765962 CDS YP_003929197.1 308185064 9788039 complement(1320042..1320467) 1 NC_014560.1 COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 1320467 rplP 9788039 rplP Helicobacter pylori SJM180 50S ribosomal protein L16 YP_003929197.1 1320042 R 765962 CDS YP_003929198.1 308185065 9788040 complement(1320470..1321174) 1 NC_014560.1 COG0092 Ribosomal protein S3; 30S ribosomal protein S3 1321174 rpsC 9788040 rpsC Helicobacter pylori SJM180 30S ribosomal protein S3 YP_003929198.1 1320470 R 765962 CDS YP_003929199.1 308185066 9788041 complement(1321178..1321546) 1 NC_014560.1 COG0091 Ribosomal protein L22; 50S ribosomal protein L22 1321546 rplV 9788041 rplV Helicobacter pylori SJM180 50S ribosomal protein L22 YP_003929199.1 1321178 R 765962 CDS YP_003929200.1 308185067 9788042 complement(1321556..1321837) 1 NC_014560.1 COG0185 Ribosomal protein S19; 30S ribosomal protein S19 1321837 rpsS 9788042 rpsS Helicobacter pylori SJM180 30S ribosomal protein S19 YP_003929200.1 1321556 R 765962 CDS YP_003929201.1 308185068 9788043 complement(1321848..1322678) 1 NC_014560.1 COG0090 Ribosomal protein L2; 50S ribosomal protein L2 1322678 rplB 9788043 rplB Helicobacter pylori SJM180 50S ribosomal protein L2 YP_003929201.1 1321848 R 765962 CDS YP_003929202.1 308185069 9788044 complement(1322695..1322976) 1 NC_014560.1 COG0089 Ribosomal protein L23; 50S ribosomal protein L23 1322976 rplW 9788044 rplW Helicobacter pylori SJM180 50S ribosomal protein L23 YP_003929202.1 1322695 R 765962 CDS YP_003929203.1 308185070 9788045 complement(1322980..1323627) 1 NC_014560.1 COG0088 Ribosomal protein L4; 50S ribosomal protein L4 1323627 rplD 9788045 rplD Helicobacter pylori SJM180 50S ribosomal protein L4 YP_003929203.1 1322980 R 765962 CDS YP_003929204.1 308185071 9788046 complement(1323662..1324237) 1 NC_014560.1 COG0087 Ribosomal protein L3; 50S ribosomal protein L3 1324237 rplC 9788046 rplC Helicobacter pylori SJM180 50S ribosomal protein L3 YP_003929204.1 1323662 R 765962 CDS YP_003929205.1 308185072 9788047 complement(1324274..1324588) 1 NC_014560.1 COG0051 Ribosomal protein S10; 30S ribosomal protein S10 1324588 rpsJ 9788047 rpsJ Helicobacter pylori SJM180 30S ribosomal protein S10 YP_003929205.1 1324274 R 765962 CDS YP_003929206.1 308185073 9788048 1324796..1325881 1 NC_014560.1 COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; hypothetical protein 1325881 9788048 HPSJM_06625 Helicobacter pylori SJM180 hypothetical protein YP_003929206.1 1324796 D 765962 CDS YP_003929207.1 308185074 9788049 1326113..1326697 1 NC_014560.1 hypothetical protein 1326697 9788049 HPSJM_06630 Helicobacter pylori SJM180 hypothetical protein YP_003929207.1 1326113 D 765962 CDS YP_003929208.1 308185075 9788050 complement(1326671..1327285) 1 NC_014560.1 COG0164 Ribonuclease HII; ribonuclease HII 1327285 rnhB 9788050 rnhB Helicobacter pylori SJM180 ribonuclease HII YP_003929208.1 1326671 R 765962 CDS YP_003929209.1 308185076 9788051 complement(1327329..1327508) 1 NC_014560.1 hypothetical protein 1327508 9788051 HPSJM_06640 Helicobacter pylori SJM180 hypothetical protein YP_003929209.1 1327329 R 765962 CDS YP_003929210.1 308185077 9788052 complement(1327587..1328978) 1 NC_014560.1 COG0114 Fumarase; fumarate hydratase 1328978 fumC 9788052 fumC Helicobacter pylori SJM180 fumarate hydratase YP_003929210.1 1327587 R 765962 CDS YP_003929211.1 308185078 9788053 1329157..1329534 1 NC_014560.1 hypothetical protein 1329534 9788053 HPSJM_06650 Helicobacter pylori SJM180 hypothetical protein YP_003929211.1 1329157 D 765962 CDS YP_003929212.1 308185079 9788054 1329539..1330777 1 NC_014560.1 hypothetical protein 1330777 9788054 HPSJM_06655 Helicobacter pylori SJM180 hypothetical protein YP_003929212.1 1329539 D 765962 CDS YP_003929213.1 308185080 9788055 1330774..1331772 1 NC_014560.1 COG0845 Membrane-fusion protein; putative cobalt-zinc-cadmium resistance protein CzcB; putative signal peptide 1331772 9788055 HPSJM_06660 Helicobacter pylori SJM180 putative cobalt-zinc-cadmium resistance protein CzcB; putative signal peptide YP_003929213.1 1330774 D 765962 CDS YP_003929214.1 308185081 9788056 1331773..1334880 1 NC_014560.1 COG3696 Putative silver efflux pump; putative heavy metal efflux pump CzcA 1334880 9788056 HPSJM_06665 Helicobacter pylori SJM180 putative heavy metal efflux pump CzcA YP_003929214.1 1331773 D 765962 CDS YP_003929215.1 308185082 9788057 complement(1334861..1335217) 1 NC_014560.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance); hypothetical protein 1335217 9788057 HPSJM_06670 Helicobacter pylori SJM180 hypothetical protein YP_003929215.1 1334861 R 765962 CDS YP_003929216.1 308185083 9788058 complement(1335211..1335897) 1 NC_014560.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); hypothetical protein 1335897 9788058 HPSJM_06675 Helicobacter pylori SJM180 hypothetical protein YP_003929216.1 1335211 R 765962 CDS YP_003929217.1 308185084 9788059 complement(1335908..1337017) 1 NC_014560.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 1337017 9788059 HPSJM_06680 Helicobacter pylori SJM180 chaperone protein DnaJ YP_003929217.1 1335908 R 765962 CDS YP_003929218.1 308185085 9788060 1337142..1338272 1 NC_014560.1 hypothetical protein 1338272 9788060 HPSJM_06685 Helicobacter pylori SJM180 hypothetical protein YP_003929218.1 1337142 D 765962 CDS YP_003929219.1 308185086 9788061 complement(1338316..1339344) 1 NC_014560.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA 1339344 mnmA 9788061 mnmA Helicobacter pylori SJM180 tRNA-specific 2-thiouridylase MnmA YP_003929219.1 1338316 R 765962 CDS YP_003929220.1 308185087 9788062 1339484..1340245 1 NC_014560.1 COG2214 DnaJ-class molecular chaperone; hypothetical protein 1340245 9788062 HPSJM_06695 Helicobacter pylori SJM180 hypothetical protein YP_003929220.1 1339484 D 765962 CDS YP_003929221.1 308185088 9788063 complement(1340242..1340757) 1 NC_014560.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase; hypothetical protein 1340757 9788063 HPSJM_06700 Helicobacter pylori SJM180 hypothetical protein YP_003929221.1 1340242 R 765962 CDS YP_003929222.1 308185089 9788064 complement(1340750..1341196) 1 NC_014560.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 1341196 9788064 HPSJM_06705 Helicobacter pylori SJM180 nickel responsive regulator YP_003929222.1 1340750 R 765962 CDS YP_003929223.1 308185090 9788065 1341506..1341943 1 NC_014560.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1341943 9788065 HPSJM_06710 Helicobacter pylori SJM180 biopolymer transport protein YP_003929223.1 1341506 D 765962 CDS YP_003929224.1 308185091 9788066 1341940..1342329 1 NC_014560.1 COG0848 Biopolymer transport protein; biopolymer transport protein exbD 1342329 9788066 HPSJM_06715 Helicobacter pylori SJM180 biopolymer transport protein exbD YP_003929224.1 1341940 D 765962 CDS YP_003929225.1 308185092 9788067 1342295..1343155 1 NC_014560.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; siderophore-mediated iron transport protein 1343155 9788067 HPSJM_06720 Helicobacter pylori SJM180 siderophore-mediated iron transport protein YP_003929225.1 1342295 D 765962 CDS YP_003929226.1 308185093 9788068 1343348..1345429 1 NC_014560.1 outer membrane protein 1345429 9788068 HPSJM_06725 Helicobacter pylori SJM180 outer membrane protein YP_003929226.1 1343348 D 765962 CDS YP_003929227.1 308185094 9788069 complement(1345570..1346298) 1 NC_014560.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein 1346298 9788069 HPSJM_06730 Helicobacter pylori SJM180 hypothetical protein YP_003929227.1 1345570 R 765962 CDS YP_003929228.1 308185095 9788070 complement(1346305..1347261) 1 NC_014560.1 COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein 1347261 9788070 HPSJM_06735 Helicobacter pylori SJM180 magnesium and cobalt transport protein YP_003929228.1 1346305 R 765962 CDS YP_003929229.1 308185096 9788071 complement(1347277..1348485) 1 NC_014560.1 COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase 1348485 pgk 9788071 pgk Helicobacter pylori SJM180 phosphoglycerate kinase YP_003929229.1 1347277 R 765962 CDS YP_003929230.1 308185097 9788072 complement(1348501..1349493) 1 NC_014560.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1349493 9788072 HPSJM_06745 Helicobacter pylori SJM180 glyceraldehyde-3-phosphate dehydrogenase YP_003929230.1 1348501 R 765962 CDS YP_003929231.1 308185098 9788073 complement(1349582..1350283) 1 NC_014560.1 COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 1350283 9788073 HPSJM_06750 Helicobacter pylori SJM180 uracil-DNA glycosylase YP_003929231.1 1349582 R 765962 CDS YP_003929232.1 308185099 9788074 complement(1350280..1350981) 1 NC_014560.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1350981 9788074 HPSJM_06755 Helicobacter pylori SJM180 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003929232.1 1350280 R 765962 CDS YP_003929233.1 308185100 9788075 complement(1350968..1352083) 1 NC_014560.1 hypothetical protein 1352083 9788075 HPSJM_06760 Helicobacter pylori SJM180 hypothetical protein YP_003929233.1 1350968 R 765962 CDS YP_003929234.1 308185101 9788076 complement(1352146..1353510) 1 NC_014560.1 COG0793 Periplasmic protease; protease 1353510 9788076 HPSJM_06765 Helicobacter pylori SJM180 protease YP_003929234.1 1352146 R 765962 CDS YP_003929235.1 308185102 9788077 complement(1355815..1356777) 1 NC_014560.1 COG4889 Predicted helicase; hypothetical protein 1356777 9788077 HPSJM_06790 Helicobacter pylori SJM180 hypothetical protein YP_003929235.1 1355815 R 765962 CDS YP_003929236.1 308185103 9788078 complement(1356870..1359404) 1 NC_014560.1 COG0286 Type I restriction-modification system methyltransferase subunit; adenine specific DNA methyltransferase 1359404 9788078 HPSJM_06795 Helicobacter pylori SJM180 adenine specific DNA methyltransferase YP_003929236.1 1356870 R 765962 CDS YP_003929237.1 308185104 9788079 complement(1359429..1360250) 1 NC_014560.1 COG0157 Nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase 1360250 9788079 HPSJM_06800 Helicobacter pylori SJM180 nicotinate-nucleotide pyrophosphorylase YP_003929237.1 1359429 R 765962 CDS YP_003929238.1 308185105 9788080 complement(1360250..1361260) 1 NC_014560.1 COG0379 Quinolinate synthase; quinolinate synthetase 1361260 9788080 HPSJM_06805 Helicobacter pylori SJM180 quinolinate synthetase YP_003929238.1 1360250 R 765962 CDS YP_003929239.1 308185106 9788081 complement(1361250..1362053) 1 NC_014560.1 COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 1362053 9788081 HPSJM_06810 Helicobacter pylori SJM180 phosphatidylserine decarboxylase YP_003929239.1 1361250 R 765962 CDS YP_003929240.1 308185107 9788082 complement(1362047..1362553) 1 NC_014560.1 hypothetical protein 1362553 9788082 HPSJM_06815 Helicobacter pylori SJM180 hypothetical protein YP_003929240.1 1362047 R 765962 CDS YP_003929241.1 308185108 9788083 complement(1362566..1363060) 1 NC_014560.1 hypothetical protein 1363060 9788083 HPSJM_06820 Helicobacter pylori SJM180 hypothetical protein YP_003929241.1 1362566 R 765962 CDS YP_003929242.1 308185109 9788084 complement(1363053..1363937) 1 NC_014560.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; prenyltransferase 1363937 ubiA 9788084 ubiA Helicobacter pylori SJM180 prenyltransferase YP_003929242.1 1363053 R 765962 CDS YP_003929243.1 308185110 9788085 complement(1363966..1365279) 1 NC_014560.1 COG0658 Predicted membrane metal-binding protein; competence locus E ComE3 1365279 9788085 HPSJM_06830 Helicobacter pylori SJM180 competence locus E ComE3 YP_003929243.1 1363966 R 765962 CDS YP_003929244.1 308185111 9788086 complement(1365276..1366736) 1 NC_014560.1 COG0305 Replicative DNA helicase; replicative DNA helicase 1366736 9788086 HPSJM_06835 Helicobacter pylori SJM180 replicative DNA helicase YP_003929244.1 1365276 R 765962 CDS YP_003929245.1 308185112 9788087 complement(1366747..1368141) 1 NC_014560.1 COG0062 Uncharacterized conserved protein; hypothetical protein 1368141 9788087 HPSJM_06840 Helicobacter pylori SJM180 hypothetical protein YP_003929245.1 1366747 R 765962 CDS YP_003929246.1 308185113 9788088 complement(1368144..1369277) 1 NC_014560.1 COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein 1369277 9788088 HPSJM_06845 Helicobacter pylori SJM180 putative histidine kinase sensor protein YP_003929246.1 1368144 R 765962 CDS YP_003929247.1 308185114 9788089 complement(1369312..1369953) 1 NC_014560.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator 1369953 9788089 HPSJM_06850 Helicobacter pylori SJM180 response regulator YP_003929247.1 1369312 R 765962 CDS YP_003929248.1 308185115 9788090 complement(1370036..1371799) 1 NC_014560.1 COG0863 DNA modification methylase; type IIS restriction enzyme R protein (MBOIIR) 1371799 9788090 HPSJM_06855 Helicobacter pylori SJM180 type IIS restriction enzyme R protein (MBOIIR) YP_003929248.1 1370036 R 765962 CDS YP_003929249.1 308185116 9788091 1371894..1372103 1 NC_014560.1 hypothetical protein 1372103 9788091 HPSJM_06860 Helicobacter pylori SJM180 hypothetical protein YP_003929249.1 1371894 D 765962 CDS YP_003929250.1 308185117 9788092 1372341..1373312 1 NC_014560.1 COG0582 Integrase; integrase/recombinase XercD family protein 1373312 9788092 HPSJM_06865 Helicobacter pylori SJM180 integrase/recombinase XercD family protein YP_003929250.1 1372341 D 765962 CDS YP_003929251.1 308185118 9788093 1373302..1373415 1 NC_014560.1 integrase/recombinase XercD family protein 1373415 9788093 HPSJM_06870 Helicobacter pylori SJM180 integrase/recombinase XercD family protein YP_003929251.1 1373302 D 765962 CDS YP_003929252.1 308185119 9788094 complement(1373498..1374181) 1 NC_014560.1 hypothetical protein 1374181 9788094 HPSJM_06875 Helicobacter pylori SJM180 hypothetical protein YP_003929252.1 1373498 R 765962 CDS YP_003929253.1 308185120 9788095 complement(1374253..1375512) 1 NC_014560.1 hypothetical protein 1375512 9788095 HPSJM_06880 Helicobacter pylori SJM180 hypothetical protein YP_003929253.1 1374253 R 765962 CDS YP_003929254.1 308185121 9788096 complement(1375514..1375792) 1 NC_014560.1 hypothetical protein 1375792 9788096 HPSJM_06885 Helicobacter pylori SJM180 hypothetical protein YP_003929254.1 1375514 R 765962 CDS YP_003929255.1 308185122 9788097 complement(1375844..1377244) 1 NC_014560.1 hypothetical protein 1377244 9788097 HPSJM_06890 Helicobacter pylori SJM180 hypothetical protein YP_003929255.1 1375844 R 765962 CDS YP_003929256.1 308185123 9788098 complement(1377248..1379458) 1 NC_014560.1 periplasmic competence protein-like protein 1379458 9788098 HPSJM_06895 Helicobacter pylori SJM180 periplasmic competence protein-like protein YP_003929256.1 1377248 R 765962 CDS YP_003929257.1 308185124 9788099 complement(1379519..1380829) 1 NC_014560.1 hypothetical protein 1380829 9788099 HPSJM_06900 Helicobacter pylori SJM180 hypothetical protein YP_003929257.1 1379519 R 765962 CDS YP_003929258.1 308185125 9788100 complement(1380830..1381867) 1 NC_014560.1 hypothetical protein 1381867 9788100 HPSJM_06905 Helicobacter pylori SJM180 hypothetical protein YP_003929258.1 1380830 R 765962 CDS YP_003929259.1 308185126 9788101 1382017..1390521 1 NC_014560.1 COG0827 Adenine-specific DNA methylase; adenine specific DNA methyltransferase 1390521 9788101 HPSJM_06910 Helicobacter pylori SJM180 adenine specific DNA methyltransferase YP_003929259.1 1382017 D 765962 CDS YP_003929260.1 308185127 9788102 1390672..1390890 1 NC_014560.1 hypothetical protein 1390890 9788102 HPSJM_06915 Helicobacter pylori SJM180 hypothetical protein YP_003929260.1 1390672 D 765962 CDS YP_003929261.1 308185128 9788103 1390880..1392940 1 NC_014560.1 COG0550 Topoisomerase IA; topoisomerase I 1392940 9788103 HPSJM_06920 Helicobacter pylori SJM180 topoisomerase I YP_003929261.1 1390880 D 765962 CDS YP_003929262.1 308185129 9788104 1392995..1393465 1 NC_014560.1 hypothetical protein 1393465 9788104 HPSJM_06925 Helicobacter pylori SJM180 hypothetical protein YP_003929262.1 1392995 D 765962 CDS YP_003929263.1 308185130 9788105 1393435..1394238 1 NC_014560.1 hypothetical protein 1394238 9788105 HPSJM_06930 Helicobacter pylori SJM180 hypothetical protein YP_003929263.1 1393435 D 765962 CDS YP_003929264.1 308185131 9788106 complement(1394312..1394977) 1 NC_014560.1 COG0087 Ribosomal protein L3; hypothetical protein 1394977 9788106 HPSJM_06935 Helicobacter pylori SJM180 hypothetical protein YP_003929264.1 1394312 R 765962 CDS YP_003929265.1 308185132 9788107 complement(1394955..1395347) 1 NC_014560.1 hypothetical protein 1395347 9788107 HPSJM_06940 Helicobacter pylori SJM180 hypothetical protein YP_003929265.1 1394955 R 765962 CDS YP_003929266.1 308185133 9788108 complement(1395394..1396062) 1 NC_014560.1 COG1192 ATPases involved in chromosome partitioning; hypothetical protein 1396062 9788108 HPSJM_06945 Helicobacter pylori SJM180 hypothetical protein YP_003929266.1 1395394 R 765962 CDS YP_003929267.1 308185134 9788109 1396700..1396864 1 NC_014560.1 hypothetical protein 1396864 9788109 HPSJM_06950 Helicobacter pylori SJM180 hypothetical protein YP_003929267.1 1396700 D 765962 CDS YP_003929268.1 308185135 9788110 1396865..1397845 1 NC_014560.1 hypothetical protein 1397845 9788110 HPSJM_06955 Helicobacter pylori SJM180 hypothetical protein YP_003929268.1 1396865 D 765962 CDS YP_003929269.1 308185136 9788111 1397845..1399821 1 NC_014560.1 hypothetical protein 1399821 9788111 HPSJM_06960 Helicobacter pylori SJM180 hypothetical protein YP_003929269.1 1397845 D 765962 CDS YP_003929270.1 308185137 9788112 1399831..1401264 1 NC_014560.1 hypothetical protein 1401264 9788112 HPSJM_06965 Helicobacter pylori SJM180 hypothetical protein YP_003929270.1 1399831 D 765962 CDS YP_003929271.1 308185138 9788113 1401261..1402529 1 NC_014560.1 hypothetical protein 1402529 9788113 HPSJM_06970 Helicobacter pylori SJM180 hypothetical protein YP_003929271.1 1401261 D 765962 CDS YP_003929272.1 308185139 9788114 1402526..1403803 1 NC_014560.1 hypothetical protein 1403803 9788114 HPSJM_06975 Helicobacter pylori SJM180 hypothetical protein YP_003929272.1 1402526 D 765962 CDS YP_003929273.1 308185140 9788115 complement(1403840..1404820) 1 NC_014560.1 hypothetical protein 1404820 9788115 HPSJM_06980 Helicobacter pylori SJM180 hypothetical protein YP_003929273.1 1403840 R 765962 CDS YP_003929274.1 308185141 9788116 1405053..1406033 1 NC_014560.1 hypothetical protein 1406033 9788116 HPSJM_06985 Helicobacter pylori SJM180 hypothetical protein YP_003929274.1 1405053 D 765962 CDS YP_003929275.1 308185142 9788117 1406203..1406886 1 NC_014560.1 hypothetical protein 1406886 9788117 HPSJM_06990 Helicobacter pylori SJM180 hypothetical protein YP_003929275.1 1406203 D 765962 CDS YP_003929276.1 308185143 9788118 1407011..1407262 1 NC_014560.1 hypothetical protein 1407262 9788118 HPSJM_06995 Helicobacter pylori SJM180 hypothetical protein YP_003929276.1 1407011 D 765962 CDS YP_003929277.1 308185144 9788119 1407279..1408148 1 NC_014560.1 COG3177 Uncharacterized conserved protein; possible cell division protein 1408148 9788119 HPSJM_07000 Helicobacter pylori SJM180 possible cell division protein YP_003929277.1 1407279 D 765962 CDS YP_003929278.1 308185145 9788120 complement(1408465..1409532) 1 NC_014560.1 COG0582 Integrase; integrase/recombinase (xerD) 1409532 9788120 HPSJM_07005 Helicobacter pylori SJM180 integrase/recombinase (xerD) YP_003929278.1 1408465 R 765962 CDS YP_003929279.1 308185146 9788121 complement(1410926..1412959) 1 NC_014560.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase); relaxase 1412959 9788121 HPSJM_07010 Helicobacter pylori SJM180 relaxase YP_003929279.1 1410926 R 765962 CDS YP_003929280.1 308185147 9788122 complement(1414005..1415753) 1 NC_014560.1 COG3505 Type IV secretory pathway, VirD4 components; VirD4 coupling protein 1415753 9788122 HPSJM_07015 Helicobacter pylori SJM180 VirD4 coupling protein YP_003929280.1 1414005 R 765962 CDS YP_003929281.1 308185148 9788123 complement(1415754..1416071) 1 NC_014560.1 hypothetical protein 1416071 9788123 HPSJM_07020 Helicobacter pylori SJM180 hypothetical protein YP_003929281.1 1415754 R 765962 CDS YP_003929282.1 308185149 9788124 complement(1416101..1416220) 1 NC_014560.1 hypothetical protein 1416220 9788124 HPSJM_07025 Helicobacter pylori SJM180 hypothetical protein YP_003929282.1 1416101 R 765962 CDS YP_003929283.1 308185150 9788125 complement(1416207..1417070) 1 NC_014560.1 COG0863 DNA modification methylase; type IIS restriction enzyme M2 protein (mod) 1417070 9788125 HPSJM_07030 Helicobacter pylori SJM180 type IIS restriction enzyme M2 protein (mod) YP_003929283.1 1416207 R 765962 CDS YP_003929284.1 308185151 9788126 1417312..1419576 1 NC_014560.1 COG2189 Adenine specific DNA methylase Mod; adenine-specific DNA methylase 1419576 9788126 HPSJM_07035 Helicobacter pylori SJM180 adenine-specific DNA methylase YP_003929284.1 1417312 D 765962 CDS YP_003929285.1 308185152 9788127 1419586..1422501 1 NC_014560.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type III restriction enzyme R protein 1422501 9788127 HPSJM_07040 Helicobacter pylori SJM180 type III restriction enzyme R protein YP_003929285.1 1419586 D 765962 CDS YP_003929286.1 308185153 9788128 complement(1422551..1423297) 1 NC_014560.1 COG1792 Cell shape-determining protein; rod shape-determining protein MreC 1423297 9788128 HPSJM_07045 Helicobacter pylori SJM180 rod shape-determining protein MreC YP_003929286.1 1422551 R 765962 CDS YP_003929287.1 308185154 9788129 complement(1423301..1424344) 1 NC_014560.1 COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 1424344 9788129 HPSJM_07050 Helicobacter pylori SJM180 rod shape-determining protein MreB YP_003929287.1 1423301 R 765962 CDS YP_003929288.1 308185155 9788130 complement(1424387..1425733) 1 NC_014560.1 COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 1425733 clpX 9788130 clpX Helicobacter pylori SJM180 ATP-dependent protease ATP-binding subunit ClpX YP_003929288.1 1424387 R 765962 CDS YP_003929289.1 308185156 9788131 complement(1425735..1426547) 1 NC_014560.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 1426547 9788131 HPSJM_07060 Helicobacter pylori SJM180 UDP-N-acetylglucosamine acyltransferase YP_003929289.1 1425735 R 765962 CDS YP_003929290.1 308185157 9788132 complement(1426550..1427029) 1 NC_014560.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 1427029 fabZ 9788132 fabZ Helicobacter pylori SJM180 (3R)-hydroxymyristoyl-ACP dehydratase YP_003929290.1 1426550 R 765962 CDS YP_003929291.1 308185158 9788133 complement(1427211..1427600) 1 NC_014560.1 COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1427600 9788133 HPSJM_07070 Helicobacter pylori SJM180 flagellar assembly protein FliW YP_003929291.1 1427211 R 765962 CDS YP_003929292.1 308185159 9788134 1427818..1427928 1 NC_014560.1 hypothetical protein 1427928 9788134 HPSJM_07075 Helicobacter pylori SJM180 hypothetical protein YP_003929292.1 1427818 D 765962 CDS YP_003929293.1 308185160 9788135 1428008..1428670 1 NC_014560.1 COG4105 DNA uptake lipoprotein; hypothetical protein 1428670 9788135 HPSJM_07080 Helicobacter pylori SJM180 hypothetical protein YP_003929293.1 1428008 D 765962 CDS YP_003929294.1 308185161 9788136 1428713..1431217 1 NC_014560.1 COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La 1431217 9788136 HPSJM_07085 Helicobacter pylori SJM180 ATP-dependent protease La YP_003929294.1 1428713 D 765962 CDS YP_003929295.1 308185162 9788137 1431226..1432053 1 NC_014560.1 COG0287 Prephenate dehydrogenase; prephenate dehydrogenase 1432053 9788137 HPSJM_07090 Helicobacter pylori SJM180 prephenate dehydrogenase YP_003929295.1 1431226 D 765962 CDS YP_003929296.1 308185163 9788138 complement(1432381..1433244) 1 NC_014560.1 COG1864 DNA/RNA endonuclease G, NUC1; putative endonuclease G 1433244 9788138 HPSJM_07095 Helicobacter pylori SJM180 putative endonuclease G YP_003929296.1 1432381 R 765962 CDS YP_003929297.1 308185164 9788139 complement(1433369..1435207) 1 NC_014560.1 COG2189 Adenine specific DNA methylase Mod; putative type III restriction enzyme M protein 1435207 9788139 HPSJM_07100 Helicobacter pylori SJM180 putative type III restriction enzyme M protein YP_003929297.1 1433369 R 765962 CDS YP_003929298.1 308185165 9788140 complement(1435210..1437537) 1 NC_014560.1 COG3421 Uncharacterized protein conserved in bacteria; putative type III restriction enzyme R protein 1437537 9788140 HPSJM_07105 Helicobacter pylori SJM180 putative type III restriction enzyme R protein YP_003929298.1 1435210 R 765962 CDS YP_003929299.1 308185166 9788141 1437945..1438793 1 NC_014560.1 COG0502 Biotin synthase and related enzymes; biotin synthase 1438793 9788141 HPSJM_07110 Helicobacter pylori SJM180 biotin synthase YP_003929299.1 1437945 D 765962 CDS YP_003929300.1 308185167 9788142 1438793..1439671 1 NC_014560.1 COG1295 Predicted membrane protein; putative ribonuclease N 1439671 9788142 HPSJM_07115 Helicobacter pylori SJM180 putative ribonuclease N YP_003929300.1 1438793 D 765962 CDS YP_003929301.1 308185168 9788143 1440124..1440336 1 NC_014560.1 COG3676 Transposase and inactivated derivatives; hypothetical protein 1440336 9788143 HPSJM_07120 Helicobacter pylori SJM180 hypothetical protein YP_003929301.1 1440124 D 765962 CDS YP_003929302.1 308185169 9788146 complement(1443822..1444088) 1 NC_014560.1 hypothetical protein 1444088 9788146 HPSJM_07125 Helicobacter pylori SJM180 hypothetical protein YP_003929302.1 1443822 R 765962 CDS YP_003929303.1 308185170 9788147 complement(1444390..1445760) 1 NC_014560.1 hypothetical protein 1445760 9788147 HPSJM_07130 Helicobacter pylori SJM180 hypothetical protein YP_003929303.1 1444390 R 765962 CDS YP_003929304.1 308185171 9788148 complement(1445776..1446138) 1 NC_014560.1 hypothetical protein 1446138 9788148 HPSJM_07135 Helicobacter pylori SJM180 hypothetical protein YP_003929304.1 1445776 R 765962 CDS YP_003929305.1 308185172 9788149 complement(1446159..1446563) 1 NC_014560.1 hypothetical protein 1446563 9788149 HPSJM_07140 Helicobacter pylori SJM180 hypothetical protein YP_003929305.1 1446159 R 765962 CDS YP_003929306.1 308185173 9788150 complement(1446554..1446850) 1 NC_014560.1 hypothetical protein 1446850 9788150 HPSJM_07145 Helicobacter pylori SJM180 hypothetical protein YP_003929306.1 1446554 R 765962 CDS YP_003929307.1 308185174 9788151 complement(1447108..1447554) 1 NC_014560.1 COG0780 Enzyme related to GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase 1447554 9788151 HPSJM_07150 Helicobacter pylori SJM180 7-cyano-7-deazaguanine reductase YP_003929307.1 1447108 R 765962 CDS YP_003929308.1 308185175 9788152 1447613..1447954 1 NC_014560.1 COG0799 Uncharacterized homolog of plant Iojap protein; iojap-related protein 1447954 9788152 HPSJM_07155 Helicobacter pylori SJM180 iojap-related protein YP_003929308.1 1447613 D 765962 CDS YP_003929309.1 308185176 9788153 1448013..1448858 1 NC_014560.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1448858 miaA 9788153 miaA Helicobacter pylori SJM180 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003929309.1 1448013 D 765962 CDS YP_003929310.1 308185177 9788154 1448859..1449962 1 NC_014560.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide biosynthesis protein 1449962 9788154 HPSJM_07165 Helicobacter pylori SJM180 lipopolysaccharide biosynthesis protein YP_003929310.1 1448859 D 765962 CDS YP_003929311.1 308185178 9788155 complement(1451730..1452509) 1 NC_014560.1 COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 1452509 murB 9788155 murB Helicobacter pylori SJM180 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003929311.1 1451730 R 765962 CDS YP_003929312.1 308185179 9788156 complement(1452513..1452764) 1 NC_014560.1 COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 1452764 fliQ 9788156 fliQ Helicobacter pylori SJM180 flagellar biosynthesis protein FliQ YP_003929312.1 1452513 R 765962 CDS YP_003929313.1 308185180 9788157 complement(1452790..1454094) 1 NC_014560.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 1454094 fliI 9788157 fliI Helicobacter pylori SJM180 flagellum-specific ATP synthase YP_003929313.1 1452790 R 765962 CDS YP_003929314.1 308185181 9788158 complement(1454095..1455009) 1 NC_014560.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; putative type IV secretion system ATPase 1455009 9788158 HPSJM_07195 Helicobacter pylori SJM180 putative type IV secretion system ATPase YP_003929314.1 1454095 R 765962 CDS YP_003929315.1 308185182 9788159 complement(1455027..1457789) 1 NC_014560.1 COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1457789 ileS 9788159 ileS Helicobacter pylori SJM180 isoleucyl-tRNA synthetase YP_003929315.1 1455027 R 765962 CDS YP_003929316.1 308185183 9788160 complement(1457814..1458068) 1 NC_014560.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); putative RNA binding protein 1458068 9788160 HPSJM_07205 Helicobacter pylori SJM180 putative RNA binding protein YP_003929316.1 1457814 R 765962 CDS YP_003929317.1 308185184 9788161 1458170..1458790 1 NC_014560.1 hypothetical protein 1458790 9788161 HPSJM_07210 Helicobacter pylori SJM180 hypothetical protein YP_003929317.1 1458170 D 765962 CDS YP_003929318.1 308185185 9788162 complement(1460002..1460259) 1 NC_014560.1 hypothetical protein 1460259 9788162 HPSJM_07225 Helicobacter pylori SJM180 hypothetical protein YP_003929318.1 1460002 R 765962 CDS YP_003929319.1 308185186 9788163 complement(1460413..1461486) 1 NC_014560.1 COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N 1461486 9788163 HPSJM_07230 Helicobacter pylori SJM180 ribosomal RNA large subunit methyltransferase N YP_003929319.1 1460413 R 765962 CDS YP_003929320.1 308185187 9788164 complement(1461483..1462472) 1 NC_014560.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; hypothetical protein 1462472 9788164 HPSJM_07235 Helicobacter pylori SJM180 hypothetical protein YP_003929320.1 1461483 R 765962 CDS YP_003929321.1 308185188 9788165 complement(1462456..1464534) 1 NC_014560.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain; ATP-binding protein 1464534 9788165 HPSJM_07240 Helicobacter pylori SJM180 ATP-binding protein YP_003929321.1 1462456 R 765962 CDS YP_003929322.1 308185189 9788166 complement(1464572..1465411) 1 NC_014560.1 COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase 1465411 ksgA 9788166 ksgA Helicobacter pylori SJM180 dimethyladenosine transferase YP_003929322.1 1464572 R 765962 CDS YP_003929323.1 308185190 9788167 1465449..1465586 1 NC_014560.1 hypothetical protein 1465586 9788167 HPSJM_07250 Helicobacter pylori SJM180 hypothetical protein YP_003929323.1 1465449 D 765962 CDS YP_003929324.1 308185191 9788168 1465650..1465922 1 NC_014560.1 hypothetical protein 1465922 9788168 HPSJM_07255 Helicobacter pylori SJM180 hypothetical protein YP_003929324.1 1465650 D 765962 CDS YP_003929325.1 308185192 9788169 1466197..1466289 1 NC_014560.1 hypothetical protein 1466289 9788169 HPSJM_07260 Helicobacter pylori SJM180 hypothetical protein YP_003929325.1 1466197 D 765962 CDS YP_003929326.1 308185193 9788170 1466349..1466477 1 NC_014560.1 hypothetical protein 1466477 9788170 HPSJM_07265 Helicobacter pylori SJM180 hypothetical protein YP_003929326.1 1466349 D 765962 CDS YP_003929327.1 308185194 9788171 1466516..1466608 1 NC_014560.1 hypothetical protein 1466608 9788171 HPSJM_07270 Helicobacter pylori SJM180 hypothetical protein YP_003929327.1 1466516 D 765962 CDS YP_003929328.1 308185195 9788172 complement(1466613..1466780) 1 NC_014560.1 hypothetical protein 1466780 9788172 HPSJM_07275 Helicobacter pylori SJM180 hypothetical protein YP_003929328.1 1466613 R 765962 CDS YP_003929329.1 308185196 9788173 complement(1466825..1469281) 1 NC_014560.1 hypothetical protein 1469281 9788173 HPSJM_07280 Helicobacter pylori SJM180 hypothetical protein YP_003929329.1 1466825 R 765962 CDS YP_003929330.1 308185197 9788174 complement(1469282..1470163) 1 NC_014560.1 COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate hydrolase 1470163 9788174 HPSJM_07285 Helicobacter pylori SJM180 formyltetrahydrofolate hydrolase YP_003929330.1 1469282 R 765962 CDS YP_003929331.1 308185198 9788175 complement(1470166..1471044) 1 NC_014560.1 COG0616 Periplasmic serine proteases (ClpP class); Signal peptide protease IV (Protease IV) (Endopeptidase IV) 1471044 9788175 HPSJM_07290 Helicobacter pylori SJM180 Signal peptide protease IV (Protease IV) (Endopeptidase IV) YP_003929331.1 1470166 R 765962 CDS YP_003929332.1 308185199 9788176 1471115..1471384 1 NC_014560.1 hypothetical protein 1471384 9788176 HPSJM_07295 Helicobacter pylori SJM180 hypothetical protein YP_003929332.1 1471115 D 765962 CDS YP_003929333.1 308185200 9788177 1471589..1472311 1 NC_014560.1 hypothetical protein 1472311 9788177 HPSJM_07300 Helicobacter pylori SJM180 hypothetical protein YP_003929333.1 1471589 D 765962 CDS YP_003929334.1 308185201 9788178 1472308..1473474 1 NC_014560.1 hypothetical protein 1473474 9788178 HPSJM_07305 Helicobacter pylori SJM180 hypothetical protein YP_003929334.1 1472308 D 765962 CDS YP_003929335.1 308185202 9788179 1473484..1473948 1 NC_014560.1 hypothetical protein 1473948 9788179 HPSJM_07310 Helicobacter pylori SJM180 hypothetical protein YP_003929335.1 1473484 D 765962 CDS YP_003929336.1 308185203 9788181 complement(1476311..1477090) 1 NC_014560.1 hypothetical protein 1477090 9788181 HPSJM_07315 Helicobacter pylori SJM180 hypothetical protein YP_003929336.1 1476311 R 765962 CDS YP_003929337.1 308185204 9788182 1477221..1477709 1 NC_014560.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1477709 9788182 HPSJM_07320 Helicobacter pylori SJM180 peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) YP_003929337.1 1477221 D 765962 CDS YP_003929338.1 308185205 9788183 1477728..1477958 1 NC_014560.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator 1477958 9788183 HPSJM_07325 Helicobacter pylori SJM180 carbon storage regulator YP_003929338.1 1477728 D 765962 CDS YP_003929339.1 308185206 9788184 1477955..1478761 1 NC_014560.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1478761 9788184 HPSJM_07330 Helicobacter pylori SJM180 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_003929339.1 1477955 D 765962 CDS YP_003929340.1 308185207 9788185 1478758..1479216 1 NC_014560.1 COG0691 tmRNA-binding protein; SsrA-binding protein 1479216 smpB 9788185 smpB Helicobacter pylori SJM180 SsrA-binding protein YP_003929340.1 1478758 D 765962 CDS YP_003929341.1 308185208 9788186 1479219..1479671 1 NC_014560.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1479671 9788186 HPSJM_07340 Helicobacter pylori SJM180 biopolymer transport protein YP_003929341.1 1479219 D 765962 CDS YP_003929342.1 308185209 9788187 1479682..1480083 1 NC_014560.1 COG0848 Biopolymer transport protein; biopolymer transport protein 1480083 9788187 HPSJM_07345 Helicobacter pylori SJM180 biopolymer transport protein YP_003929342.1 1479682 D 765962 CDS YP_003929343.1 308185210 9788188 1480155..1480289 1 NC_014560.1 COG0230 Ribosomal protein L34; 50S ribosomal protein L34 1480289 rpmH 9788188 rpmH Helicobacter pylori SJM180 50S ribosomal protein L34 YP_003929343.1 1480155 D 765962 CDS YP_003929344.1 308185211 9788189 1480249..1480734 1 NC_014560.1 COG0594 RNase P protein component; ribonuclease P protein component 1480734 9788189 HPSJM_07355 Helicobacter pylori SJM180 ribonuclease P protein component YP_003929344.1 1480249 D 765962 CDS YP_003929345.1 308185212 9788190 1480721..1481074 1 NC_014560.1 COG0759 Uncharacterized conserved protein; hypothetical protein 1481074 9788190 HPSJM_07360 Helicobacter pylori SJM180 hypothetical protein YP_003929345.1 1480721 D 765962 CDS YP_003929346.1 308185213 9788191 1481080..1482726 1 NC_014560.1 COG0706 Preprotein translocase subunit YidC; putative inner membrane protein translocase component YidC 1482726 9788191 HPSJM_07365 Helicobacter pylori SJM180 putative inner membrane protein translocase component YidC YP_003929346.1 1481080 D 765962 CDS YP_003929347.1 308185214 9788192 1482726..1483523 1 NC_014560.1 COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain; hypothetical protein 1483523 9788192 HPSJM_07370 Helicobacter pylori SJM180 hypothetical protein YP_003929347.1 1482726 D 765962 CDS YP_003929348.1 308185215 9788193 1483516..1484868 1 NC_014560.1 COG0486 Predicted GTPase; tRNA modification GTPase TrmE 1484868 trmE 9788193 trmE Helicobacter pylori SJM180 tRNA modification GTPase TrmE YP_003929348.1 1483516 D 765962 CDS YP_003929349.1 308185216 9788194 1485070..1487328 1 NC_014560.1 outer membrane protein HomD 1487328 9788194 HPSJM_07380 Helicobacter pylori SJM180 outer membrane protein HomD YP_003929349.1 1485070 D 765962 CDS YP_003929350.1 308185217 9788195 complement(1487376..1487534) 1 NC_014560.1 hypothetical protein 1487534 9788195 HPSJM_07385 Helicobacter pylori SJM180 hypothetical protein YP_003929350.1 1487376 R 765962 CDS YP_003929351.1 308185218 9788196 complement(1487914..1488825) 1 NC_014560.1 hypothetical protein 1488825 9788196 HPSJM_07390 Helicobacter pylori SJM180 hypothetical protein YP_003929351.1 1487914 R 765962 CDS YP_003929352.1 308185219 9788197 complement(1488835..1489176) 1 NC_014560.1 COG0481 Membrane GTPase LepA; hypothetical protein 1489176 9788197 HPSJM_07395 Helicobacter pylori SJM180 hypothetical protein YP_003929352.1 1488835 R 765962 CDS YP_003929353.1 308185220 9788198 complement(1489184..1489711) 1 NC_014560.1 membrane-associated lipoprotein 1489711 9788198 HPSJM_07400 Helicobacter pylori SJM180 membrane-associated lipoprotein YP_003929353.1 1489184 R 765962 CDS YP_003929354.1 308185221 9788199 complement(1489735..1490367) 1 NC_014560.1 hypothetical protein 1490367 9788199 HPSJM_07405 Helicobacter pylori SJM180 hypothetical protein YP_003929354.1 1489735 R 765962 CDS YP_003929355.1 308185222 9788200 complement(1490729..1491043) 1 NC_014560.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 1491043 9788200 HPSJM_07410 Helicobacter pylori SJM180 thioredoxin YP_003929355.1 1490729 R 765962 CDS YP_003929356.1 308185223 9788201 complement(1491099..1491872) 1 NC_014560.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B 1491872 9788201 HPSJM_07415 Helicobacter pylori SJM180 ribosomal large subunit pseudouridine synthase B YP_003929356.1 1491099 R 765962 CDS YP_003929357.1 308185224 9788202 complement(1491869..1495504) 1 NC_014560.1 COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 1495504 dnaE 9788202 dnaE Helicobacter pylori SJM180 DNA polymerase III subunit alpha YP_003929357.1 1491869 R 765962 CDS YP_003929358.1 308185225 9788203 1495653..1496705 1 NC_014560.1 COG1858 Cytochrome c peroxidase; cytochrome c551 peroxidase 1496705 9788203 HPSJM_07425 Helicobacter pylori SJM180 cytochrome c551 peroxidase YP_003929358.1 1495653 D 765962 CDS YP_003929359.1 308185226 9788204 complement(1496804..1498066) 1 NC_014560.1 COG3440 Predicted restriction endonuclease; hypothetical protein 1498066 9788204 HPSJM_07430 Helicobacter pylori SJM180 hypothetical protein YP_003929359.1 1496804 R 765962 CDS YP_003929360.1 308185227 9788205 complement(1498069..1499022) 1 NC_014560.1 COG0270 Site-specific DNA methylase; DNA (cytosine-5-)-methyltransferase 1499022 9788205 HPSJM_07435 Helicobacter pylori SJM180 DNA (cytosine-5-)-methyltransferase YP_003929360.1 1498069 R 765962 CDS YP_003929361.1 308185228 9788206 complement(1499022..1500128) 1 NC_014560.1 COG0270 Site-specific DNA methylase; DNA-cytosine methyltransferase 1500128 9788206 HPSJM_07440 Helicobacter pylori SJM180 DNA-cytosine methyltransferase YP_003929361.1 1499022 R 765962 CDS YP_003929362.1 308185229 9788207 complement(1500128..1500439) 1 NC_014560.1 COG3636 Predicted transcriptional regulator; addiction module antidote protein 1500439 9788207 HPSJM_07445 Helicobacter pylori SJM180 addiction module antidote protein YP_003929362.1 1500128 R 765962 CDS YP_003929363.1 308185230 9788208 complement(1500659..1501246) 1 NC_014560.1 COG3187 Heat shock protein; putative secreted motility protein 1501246 9788208 HPSJM_07450 Helicobacter pylori SJM180 putative secreted motility protein YP_003929363.1 1500659 R 765962 CDS YP_003929364.1 308185231 9788209 complement(1501265..1501942) 1 NC_014560.1 hypothetical protein 1501942 9788209 HPSJM_07455 Helicobacter pylori SJM180 hypothetical protein YP_003929364.1 1501265 R 765962 CDS YP_003929365.1 308185232 9788210 complement(1501945..1502760) 1 NC_014560.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transport system substrate binding protein 1502760 9788210 HPSJM_07460 Helicobacter pylori SJM180 ABC transport system substrate binding protein YP_003929365.1 1501945 R 765962 CDS YP_003929366.1 308185233 9788211 complement(1502745..1503530) 1 NC_014560.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein 1503530 9788211 HPSJM_07465 Helicobacter pylori SJM180 ABC transporter ATP-binding protein YP_003929366.1 1502745 R 765962 CDS YP_003929367.1 308185234 9788212 complement(1503530..1504663) 1 NC_014560.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; putative ABC transport system permease protein 1504663 9788212 HPSJM_07470 Helicobacter pylori SJM180 putative ABC transport system permease protein YP_003929367.1 1503530 R 765962 CDS YP_003929368.1 308185235 9788213 complement(1504685..1504813) 1 NC_014560.1 hypothetical protein 1504813 9788213 HPSJM_07475 Helicobacter pylori SJM180 hypothetical protein YP_003929368.1 1504685 R 765962 CDS YP_003929369.1 308185236 9788214 1504797..1505492 1 NC_014560.1 putative outer membrane protein; putative signal peptide 1505492 9788214 HPSJM_07480 Helicobacter pylori SJM180 putative outer membrane protein; putative signal peptide YP_003929369.1 1504797 D 765962 CDS YP_003929370.1 308185237 9788215 complement(1505497..1506519) 1 NC_014560.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 1506519 9788215 HPSJM_07485 Helicobacter pylori SJM180 branched-chain amino acid aminotransferase YP_003929370.1 1505497 R 765962 CDS YP_003929371.1 308185238 9788216 complement(1506571..1507317) 1 NC_014560.1 outer membrane protein 1507317 9788216 HPSJM_07490 Helicobacter pylori SJM180 outer membrane protein YP_003929371.1 1506571 R 765962 CDS YP_003929372.1 308185239 9788217 complement(1507433..1510126) 1 NC_014560.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 1510126 9788217 HPSJM_07495 Helicobacter pylori SJM180 DNA polymerase I YP_003929372.1 1507433 R 765962 CDS YP_003929373.1 308185240 9788218 complement(1510195..1511409) 1 NC_014560.1 type II restriction enzyme 1511409 9788218 HPSJM_07500 Helicobacter pylori SJM180 type II restriction enzyme YP_003929373.1 1510195 R 765962 CDS YP_003929374.1 308185241 9788219 complement(1511406..1513445) 1 NC_014560.1 COG0286 Type I restriction-modification system methyltransferase subunit; restriction enzyme BcgI alpha chain-like protein 1513445 9788219 HPSJM_07505 Helicobacter pylori SJM180 restriction enzyme BcgI alpha chain-like protein YP_003929374.1 1511406 R 765962 CDS YP_003929375.1 308185242 9788220 complement(1513479..1514054) 1 NC_014560.1 hypothetical protein 1514054 9788220 HPSJM_07510 Helicobacter pylori SJM180 hypothetical protein YP_003929375.1 1513479 R 765962 CDS YP_003929376.1 308185243 9788221 complement(1514042..1514617) 1 NC_014560.1 COG0125 Thymidylate kinase; thymidylate kinase 1514617 tmk 9788221 tmk Helicobacter pylori SJM180 thymidylate kinase YP_003929376.1 1514042 R 765962 CDS YP_003929377.1 308185244 9788222 complement(1514619..1515092) 1 NC_014560.1 COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 1515092 coaD 9788222 coaD Helicobacter pylori SJM180 phosphopantetheine adenylyltransferase YP_003929377.1 1514619 R 765962 CDS YP_003929378.1 308185245 9788223 complement(1515092..1515655) 1 NC_014560.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1515655 9788223 HPSJM_07525 Helicobacter pylori SJM180 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003929378.1 1515092 R 765962 CDS YP_003929379.1 308185246 9788224 1515636..1515740 1 NC_014560.1 hypothetical protein 1515740 9788224 HPSJM_07530 Helicobacter pylori SJM180 hypothetical protein YP_003929379.1 1515636 D 765962 CDS YP_003929380.1 308185247 9788225 complement(1515665..1516321) 1 NC_014560.1 COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA 1516321 flgA 9788225 flgA Helicobacter pylori SJM180 flagellar basal body P-ring biosynthesis protein FlgA YP_003929380.1 1515665 R 765962 CDS YP_003929381.1 308185248 9788226 complement(1516318..1518363) 1 NC_014560.1 COG0210 Superfamily I DNA and RNA helicases; putative ATP-dependent DNA helicase 1518363 9788226 HPSJM_07540 Helicobacter pylori SJM180 putative ATP-dependent DNA helicase YP_003929381.1 1516318 R 765962 CDS YP_003929382.1 308185249 9788227 complement(1518363..1520897) 1 NC_014560.1 COG0457 FOG: TPR repeat; hypothetical protein 1520897 9788227 HPSJM_07545 Helicobacter pylori SJM180 hypothetical protein YP_003929382.1 1518363 R 765962 CDS YP_003929383.1 308185250 9788228 complement(1520907..1522154) 1 NC_014560.1 COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase 1522154 9788228 HPSJM_07550 Helicobacter pylori SJM180 seryl-tRNA synthetase YP_003929383.1 1520907 R 765962 CDS YP_003929384.1 308185251 9788229 complement(1522155..1522952) 1 NC_014560.1 COG0388 Predicted amidohydrolase; hypothetical protein 1522952 9788229 HPSJM_07555 Helicobacter pylori SJM180 hypothetical protein YP_003929384.1 1522155 R 765962 CDS YP_003929385.1 308185252 9788230 complement(1522956..1523216) 1 NC_014560.1 COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1523216 9788230 HPSJM_07560 Helicobacter pylori SJM180 exodeoxyribonuclease VII small subunit YP_003929385.1 1522956 R 765962 CDS YP_003929386.1 308185253 9788231 complement(1523226..1523966) 1 NC_014560.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 1523966 ubiE 9788231 ubiE Helicobacter pylori SJM180 ubiquinone/menaquinone biosynthesis methyltransferase YP_003929386.1 1523226 R 765962 CDS YP_003929387.1 308185254 9788232 complement(1523993..1524439) 1 NC_014560.1 COG1981 Predicted membrane protein; hypothetical protein 1524439 9788232 HPSJM_07570 Helicobacter pylori SJM180 hypothetical protein YP_003929387.1 1523993 R 765962 CDS YP_003929388.1 308185255 9788233 complement(1524450..1525022) 1 NC_014560.1 COG1739 Uncharacterized conserved protein; X-Pro dipeptidase 1525022 9788233 HPSJM_07575 Helicobacter pylori SJM180 X-Pro dipeptidase YP_003929388.1 1524450 R 765962 CDS YP_003929389.1 308185256 9788234 complement(1525009..1526139) 1 NC_014560.1 COG0842 ABC-type multidrug transport system, permease component; antibiotic transport system permease protein 1526139 9788234 HPSJM_07580 Helicobacter pylori SJM180 antibiotic transport system permease protein YP_003929389.1 1525009 R 765962 CDS YP_003929390.1 308185257 9788235 complement(1526136..1527233) 1 NC_014560.1 COG0842 ABC-type multidrug transport system, permease component; ABC-2 type transport system permease protein 1527233 9788235 HPSJM_07585 Helicobacter pylori SJM180 ABC-2 type transport system permease protein YP_003929390.1 1526136 R 765962 CDS YP_003929391.1 308185258 9788236 complement(1527245..1528234) 1 NC_014560.1 COG0845 Membrane-fusion protein; hypothetical protein 1528234 9788236 HPSJM_07590 Helicobacter pylori SJM180 hypothetical protein YP_003929391.1 1527245 R 765962 CDS YP_003929392.1 308185259 9788237 complement(1528246..1529778) 1 NC_014560.1 COG1538 Outer membrane protein; lipase-like protein 1529778 9788237 HPSJM_07595 Helicobacter pylori SJM180 lipase-like protein YP_003929392.1 1528246 R 765962 CDS YP_003929393.1 308185260 9788238 complement(1529775..1531124) 1 NC_014560.1 COG1253 Hemolysins and related proteins containing CBS domains; hypothetical protein 1531124 9788238 HPSJM_07600 Helicobacter pylori SJM180 hypothetical protein YP_003929393.1 1529775 R 765962 CDS YP_003929394.1 308185261 9788239 complement(1531221..1532822) 1 NC_014560.1 COG0306 Phosphate/sulphate permeases; Transporter; putative phosphate transporter; putative membrane protein; putative signal peptide 1532822 9788239 HPSJM_07605 Helicobacter pylori SJM180 Transporter; putative phosphate transporter; putative membrane protein; putative signal peptide YP_003929394.1 1531221 R 765962 CDS YP_003929395.1 308185262 9788240 1532963..1533232 1 NC_014560.1 COG0694 Thioredoxin-like proteins and domains; putative nifU-like protein 1533232 9788240 HPSJM_07610 Helicobacter pylori SJM180 putative nifU-like protein YP_003929395.1 1532963 D 765962 CDS YP_003929396.1 308185263 9788241 1533245..1533856 1 NC_014560.1 hypothetical protein 1533856 9788241 HPSJM_07615 Helicobacter pylori SJM180 hypothetical protein YP_003929396.1 1533245 D 765962 CDS YP_003929397.1 308185264 9788242 1533860..1535203 1 NC_014560.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1535203 murE 9788242 murE Helicobacter pylori SJM180 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_003929397.1 1533860 D 765962 CDS YP_003929398.1 308185265 9788243 1535207..1536157 1 NC_014560.1 COG0176 Transaldolase; transaldolase 1536157 9788243 HPSJM_07625 Helicobacter pylori SJM180 transaldolase YP_003929398.1 1535207 D 765962 CDS YP_003929399.1 308185266 9788244 1536212..1536748 1 NC_014560.1 COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25/general stress protein Ctc 1536748 9788244 HPSJM_07630 Helicobacter pylori SJM180 50S ribosomal protein L25/general stress protein Ctc YP_003929399.1 1536212 D 765962 CDS YP_003929400.1 308185267 9788245 1536758..1537318 1 NC_014560.1 COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1537318 9788245 HPSJM_07635 Helicobacter pylori SJM180 peptidyl-tRNA hydrolase YP_003929400.1 1536758 D 765962 CDS YP_003929401.1 308185268 9788246 1537328..1538395 1 NC_014560.1 COG0795 Predicted permeases; hypothetical protein 1538395 9788246 HPSJM_07640 Helicobacter pylori SJM180 hypothetical protein YP_003929401.1 1537328 D 765962 CDS YP_003929402.1 308185269 9788247 1538452..1539453 1 NC_014560.1 COG3392 Adenine-specific DNA methylase; type II methylase 1539453 9788247 HPSJM_07645 Helicobacter pylori SJM180 type II methylase YP_003929402.1 1538452 D 765962 CDS YP_003929403.1 308185270 9788248 1539504..1540349 1 NC_014560.1 COG0338 Site-specific DNA methylase; DNA adenine methylase 1540349 9788248 HPSJM_07650 Helicobacter pylori SJM180 DNA adenine methylase YP_003929403.1 1539504 D 765962 CDS YP_003929404.1 308185271 9788249 1540356..1541969 1 NC_014560.1 COG0051 Ribosomal protein S10; restriction endonuclease 1541969 9788249 HPSJM_07655 Helicobacter pylori SJM180 restriction endonuclease YP_003929404.1 1540356 D 765962 CDS YP_003929405.1 308185272 9788250 complement(1542015..1543181) 1 NC_014560.1 outer membrane protein (omp32) 1543181 9788250 HPSJM_07660 Helicobacter pylori SJM180 outer membrane protein (omp32) YP_003929405.1 1542015 R 765962 CDS YP_003929406.1 308185273 9788251 1543360..1543797 1 NC_014560.1 COG3399 Uncharacterized protein conserved in bacteria; hypothetical protein 1543797 9788251 HPSJM_07665 Helicobacter pylori SJM180 hypothetical protein YP_003929406.1 1543360 D 765962 CDS YP_003929407.1 308185274 9788252 complement(1543794..1546145) 1 NC_014560.1 COG2217 Cation transport ATPase; putative component of cation transport for cbb3-type oxidase 1546145 9788252 HPSJM_07670 Helicobacter pylori SJM180 putative component of cation transport for cbb3-type oxidase YP_003929407.1 1543794 R 765962 CDS YP_003929408.1 308185275 9788253 complement(1546171..1546887) 1 NC_014560.1 COG4123 Predicted O-methyltransferase; hypothetical protein 1546887 9788253 HPSJM_07675 Helicobacter pylori SJM180 hypothetical protein YP_003929408.1 1546171 R 765962 CDS YP_003929409.1 308185276 9788254 complement(1546869..1547903) 1 NC_014560.1 COG0117 Pyrimidine deaminase; riboflavin biosynthesis protein (ribG) 1547903 9788254 HPSJM_07680 Helicobacter pylori SJM180 riboflavin biosynthesis protein (ribG) YP_003929409.1 1546869 R 765962 CDS YP_003929410.1 308185277 9788255 complement(1547900..1549126) 1 NC_014560.1 COG0786 Na+/glutamate symporter; Sodium/glutamate symporter 1549126 9788255 HPSJM_07685 Helicobacter pylori SJM180 Sodium/glutamate symporter YP_003929410.1 1547900 R 765962 CDS YP_003929411.1 308185278 9788256 1549212..1550411 1 NC_014560.1 COG1748 Saccharopine dehydrogenase and related proteins; saccharopine dehydrogenase 1550411 9788256 HPSJM_07690 Helicobacter pylori SJM180 saccharopine dehydrogenase YP_003929411.1 1549212 D 765962 CDS YP_003929412.1 308185279 9788257 complement(1550421..1551797) 1 NC_014560.1 COG0348 Polyferredoxin; ferrodoxin-like protein 1551797 9788257 HPSJM_07695 Helicobacter pylori SJM180 ferrodoxin-like protein YP_003929412.1 1550421 R 765962 CDS YP_003929413.1 308185280 9788258 1551777..1552565 1 NC_014560.1 COG0344 Predicted membrane protein; putative glycerol-3-phosphate acyltransferase PlsY 1552565 9788258 HPSJM_07700 Helicobacter pylori SJM180 putative glycerol-3-phosphate acyltransferase PlsY YP_003929413.1 1551777 D 765962 CDS YP_003929414.1 308185281 9788259 1552562..1552915 1 NC_014560.1 COG1539 Dihydroneopterin aldolase; dihydroneopterin aldolase 1552915 9788259 HPSJM_07705 Helicobacter pylori SJM180 dihydroneopterin aldolase YP_003929414.1 1552562 D 765962 CDS YP_003929415.1 308185282 9788260 1552899..1553201 1 NC_014560.1 hypothetical protein 1553201 9788260 HPSJM_07710 Helicobacter pylori SJM180 hypothetical protein YP_003929415.1 1552899 D 765962 CDS YP_003929416.1 308185283 9788261 1553378..1555969 1 NC_014560.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 1555969 9788261 HPSJM_07715 Helicobacter pylori SJM180 iron-regulated outer membrane protein YP_003929416.1 1553378 D 765962 CDS YP_003929417.1 308185284 9788262 1556198..1557358 1 NC_014560.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 1557358 9788262 HPSJM_07720 Helicobacter pylori SJM180 selenocysteine synthase YP_003929417.1 1556198 D 765962 CDS YP_003929418.1 308185285 9788263 1557453..1558640 1 NC_014560.1 COG0195 Transcription elongation factor; transcription elongation factor NusA 1558640 nusA 9788263 nusA Helicobacter pylori SJM180 transcription elongation factor NusA YP_003929418.1 1557453 D 765962 CDS YP_003929419.1 308185286 9788264 complement(1558836..1559528) 1 NC_014560.1 hypothetical protein 1559528 9788264 HPSJM_07730 Helicobacter pylori SJM180 hypothetical protein YP_003929419.1 1558836 R 765962 CDS YP_003929420.1 308185287 9788265 complement(1559589..1560026) 1 NC_014560.1 COG3600 Uncharacterized phage-associated protein; phage-associated protein 1560026 9788265 HPSJM_07735 Helicobacter pylori SJM180 phage-associated protein YP_003929420.1 1559589 R 765962 CDS YP_003929421.1 308185288 9788266 complement(1560251..1561879) 1 NC_014560.1 COG3344 Retron-type reverse transcriptase; hypothetical protein 1561879 9788266 HPSJM_07740 Helicobacter pylori SJM180 hypothetical protein YP_003929421.1 1560251 R 765962 CDS YP_003929422.1 308185289 9788267 complement(1561879..1561971) 1 NC_014560.1 hypothetical protein 1561971 9788267 HPSJM_07745 Helicobacter pylori SJM180 hypothetical protein YP_003929422.1 1561879 R 765962 CDS YP_003929423.1 308185290 9788268 complement(1562596..1566354) 1 NC_014560.1 COG1002 Type II restriction enzyme, methylase subunits; type IIS restriction-modification protein 1566354 9788268 HPSJM_07750 Helicobacter pylori SJM180 type IIS restriction-modification protein YP_003929423.1 1562596 R 765962 CDS YP_003929424.1 308185291 9788269 complement(1569372..1569965) 1 NC_014560.1 COG2189 Adenine specific DNA methylase Mod; type III R-M system modification enzyme 1569965 9788269 HPSJM_07765 Helicobacter pylori SJM180 type III R-M system modification enzyme YP_003929424.1 1569372 R 765962 CDS YP_003929425.1 308185292 9788270 complement(1569962..1571341) 1 NC_014560.1 COG2189 Adenine specific DNA methylase Mod; type III R-M system modification enzyme 1571341 9788270 HPSJM_07770 Helicobacter pylori SJM180 type III R-M system modification enzyme YP_003929425.1 1569962 R 765962 CDS YP_003929426.1 308185293 9788271 complement(1571383..1573254) 1 NC_014560.1 COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 1573254 9788271 HPSJM_07775 Helicobacter pylori SJM180 ATP-dependent DNA helicase RecG YP_003929426.1 1571383 R 765962 CDS YP_003929427.1 308185294 9788272 1573336..1573683 1 NC_014560.1 hypothetical protein 1573683 9788272 HPSJM_07780 Helicobacter pylori SJM180 hypothetical protein YP_003929427.1 1573336 D 765962 CDS YP_003929428.1 308185295 9788273 1573687..1574322 1 NC_014560.1 hypothetical protein 1574322 9788273 HPSJM_07785 Helicobacter pylori SJM180 hypothetical protein YP_003929428.1 1573687 D 765962 CDS YP_003929429.1 308185296 9788274 complement(1574319..1575071) 1 NC_014560.1 COG0708 Exonuclease III; exodeoxyribonuclease III 1575071 9788274 HPSJM_07790 Helicobacter pylori SJM180 exodeoxyribonuclease III YP_003929429.1 1574319 R 765962 CDS YP_003929430.1 308185297 9788276 complement(1575251..1576690) 1 NC_014560.1 hypothetical protein 1576690 9788276 HPSJM_07795 Helicobacter pylori SJM180 hypothetical protein YP_003929430.1 1575251 R 765962 CDS YP_003929431.1 308185298 9788277 complement(1576919..1578286) 1 NC_014560.1 COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein 1578286 dnaA 9788277 dnaA Helicobacter pylori SJM180 chromosomal replication initiation protein YP_003929431.1 1576919 R 765962 CDS YP_003929432.1 308185299 9788278 1578440..1578982 1 NC_014560.1 COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase (punB) 1578982 9788278 HPSJM_07805 Helicobacter pylori SJM180 purine nucleoside phosphorylase (punB) YP_003929432.1 1578440 D 765962 CDS YP_003929433.1 308185300 9788279 1579027..1579266 1 NC_014560.1 hypothetical protein 1579266 9788279 HPSJM_07810 Helicobacter pylori SJM180 hypothetical protein YP_003929433.1 1579027 D 765962 CDS YP_003929434.1 308185301 9788280 1579267..1581060 1 NC_014560.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 1581060 9788280 HPSJM_07815 Helicobacter pylori SJM180 glucosamine--fructose-6-phosphate aminotransferase YP_003929434.1 1579267 D 765962 CDS YP_003929435.1 308185302 9788281 1581084..1581710 1 NC_014560.1 COG1351 Predicted alternative thymidylate synthase; FAD-dependent thymidylate synthase 1581710 thyX 9788281 thyX Helicobacter pylori SJM180 FAD-dependent thymidylate synthase YP_003929435.1 1581084 D 765962 CDS YP_003929436.1 308185303 9788282 complement(1581732..1581881) 1 NC_014560.1 hypothetical protein 1581881 9788282 HPSJM_07825 Helicobacter pylori SJM180 hypothetical protein YP_003929436.1 1581732 R 765962 CDS YP_003929437.1 308185304 9788283 complement(1582042..1583244) 1 NC_014560.1 COG0732 Restriction endonuclease S subunits; restriction modification system DNA specificity domain protein 1583244 9788283 HPSJM_07830 Helicobacter pylori SJM180 restriction modification system DNA specificity domain protein YP_003929437.1 1582042 R 765962 CDS YP_003929438.1 308185305 9788284 1585775..1588750 1 NC_014560.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; typeI restriction enzyme R protein 1588750 9788284 HPSJM_07845 Helicobacter pylori SJM180 typeI restriction enzyme R protein YP_003929438.1 1585775 D 765962 CDS YP_003929439.1 308185306 9788285 1588750..1589457 1 NC_014560.1 COG1451 Predicted metal-dependent hydrolase; hypothetical protein 1589457 9788285 HPSJM_07850 Helicobacter pylori SJM180 hypothetical protein YP_003929439.1 1588750 D 765962 CDS YP_003929440.1 308185307 9788286 complement(1589547..1592072) 1 NC_014560.1 COG4772 Outer membrane receptor for Fe3+-dicitrate; iron(III) dicitrate transport protein (fecA) 1592072 9788286 HPSJM_07855 Helicobacter pylori SJM180 iron(III) dicitrate transport protein (fecA) YP_003929440.1 1589547 R 765962 CDS YP_003929441.1 308185308 9788287 complement(1592614..1593582) 1 NC_014560.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; arginase 1593582 9788287 HPSJM_07860 Helicobacter pylori SJM180 arginase YP_003929441.1 1592614 R 765962 CDS YP_003929442.1 308185309 9788288 1593785..1594927 1 NC_014560.1 COG0686 Alanine dehydrogenase; alanine dehydrogenase 1594927 9788288 HPSJM_07865 Helicobacter pylori SJM180 alanine dehydrogenase YP_003929442.1 1593785 D 765962 CDS YP_003929443.1 308185310 9788289 1595047..1596786 1 NC_014560.1 COG1479 Uncharacterized conserved protein; hypothetical protein 1596786 9788289 HPSJM_07870 Helicobacter pylori SJM180 hypothetical protein YP_003929443.1 1595047 D 765962 CDS YP_003929444.1 308185311 9788290 complement(1596797..1597525) 1 NC_014560.1 outer membrane protein 1597525 9788290 HPSJM_07875 Helicobacter pylori SJM180 outer membrane protein YP_003929444.1 1596797 R 765962 CDS YP_003929445.1 308185312 9788291 complement(1597522..1597689) 1 NC_014560.1 hypothetical protein 1597689 9788291 HPSJM_07880 Helicobacter pylori SJM180 hypothetical protein YP_003929445.1 1597522 R 765962 CDS YP_003929446.1 308185313 9788292 1597711..1598565 1 NC_014560.1 COG0061 Predicted sugar kinase; probable inorganic polyphosphate/ATP-NAD kinase 1598565 9788292 HPSJM_07885 Helicobacter pylori SJM180 probable inorganic polyphosphate/ATP-NAD kinase YP_003929446.1 1597711 D 765962 CDS YP_003929447.1 308185314 9788293 1598588..1600162 1 NC_014560.1 COG0497 ATPase involved in DNA repair; DNA repair protein RecN 1600162 9788293 HPSJM_07890 Helicobacter pylori SJM180 DNA repair protein RecN YP_003929447.1 1598588 D 765962 CDS YP_003929448.1 308185315 9788294 1600159..1601466 1 NC_014560.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; putative fibronectin/fibrinogen-binding protein 1601466 9788294 HPSJM_07895 Helicobacter pylori SJM180 putative fibronectin/fibrinogen-binding protein YP_003929448.1 1600159 D 765962 CDS YP_003929449.1 308185316 9788295 1601485..1601781 1 NC_014560.1 hypothetical protein 1601781 9788295 HPSJM_07900 Helicobacter pylori SJM180 hypothetical protein YP_003929449.1 1601485 D 765962 CDS YP_003929450.1 308185317 9788296 1602105..1602221 1 NC_014560.1 hypothetical protein 1602221 9788296 HPSJM_07905 Helicobacter pylori SJM180 hypothetical protein YP_003929450.1 1602105 D 765962 CDS YP_003929451.1 308185318 9788297 1602279..1602377 1 NC_014560.1 hypothetical protein 1602377 9788297 HPSJM_07910 Helicobacter pylori SJM180 hypothetical protein YP_003929451.1 1602279 D 765962 CDS YP_003929452.1 308185319 9788298 1602364..1603593 1 NC_014560.1 COG0675 Transposase and inactivated derivatives; Transposase, OrfB, ISHp609 1603593 9788298 HPSJM_07915 Helicobacter pylori SJM180 Transposase, OrfB, ISHp609 YP_003929452.1 1602364 D 765962 CDS YP_003929453.1 308185320 9788299 complement(1603796..1604659) 1 NC_014560.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon 1604659 9788299 HPSJM_07920 Helicobacter pylori SJM180 DNA polymerase III subunit epsilon YP_003929453.1 1603796 R 765962 CDS YP_003929454.1 308185321 9788300 complement(1604637..1605290) 1 NC_014560.1 COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 1605290 9788300 HPSJM_07925 Helicobacter pylori SJM180 ribulose-phosphate 3-epimerase YP_003929454.1 1604637 R 765962 CDS YP_003929455.1 308185322 9788301 1605361..1606233 1 NC_014560.1 COG0158 Fructose-1, 6-bisphosphatase; fructose-1, 6-bisphosphatase 1606233 9788301 HPSJM_07930 Helicobacter pylori SJM180 fructose-1, 6-bisphosphatase YP_003929455.1 1605361 D 765962 CDS YP_003929456.1 308185323 9788302 1606233..1606436 1 NC_014560.1 hypothetical protein 1606436 9788302 HPSJM_07935 Helicobacter pylori SJM180 hypothetical protein YP_003929456.1 1606233 D 765962 CDS YP_003929457.1 308185324 9788303 1606449..1607345 1 NC_014560.1 COG0827 Adenine-specific DNA methylase; putative type II methylase protein 1607345 9788303 HPSJM_07940 Helicobacter pylori SJM180 putative type II methylase protein YP_003929457.1 1606449 D 765962 CDS YP_003929458.1 308185325 9788304 complement(1608189..1609046) 1 NC_014560.1 COG2857 Cytochrome c1; Ubiquinol cytochrome c oxidoreductase, cytochrome c subunit 1609046 9788304 HPSJM_07955 Helicobacter pylori SJM180 Ubiquinol cytochrome c oxidoreductase, cytochrome c subunit YP_003929458.1 1608189 R 765962 CDS YP_003929459.1 308185326 9788305 complement(1609043..1610281) 1 NC_014560.1 COG1290 Cytochrome b subunit of the bc complex; Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; putative membrane protein 1610281 9788305 HPSJM_07960 Helicobacter pylori SJM180 Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; putative membrane protein YP_003929459.1 1609043 R 765962 CDS YP_003929460.1 308185327 9788306 complement(1610292..1610795) 1 NC_014560.1 COG0723 Rieske Fe-S protein; ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) 1610795 9788306 HPSJM_07965 Helicobacter pylori SJM180 ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) YP_003929460.1 1610292 R 765962 CDS YP_003929461.1 308185328 9788307 complement(1610920..1613919) 1 NC_014560.1 COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 1613919 9788307 HPSJM_07970 Helicobacter pylori SJM180 transcription-repair coupling factor YP_003929461.1 1610920 R 765962 CDS YP_003929462.1 308185329 9788308 complement(1613923..1614333) 1 NC_014560.1 COG1664 Integral membrane protein CcmA involved in cell shape determination; hypothetical protein 1614333 9788308 HPSJM_07975 Helicobacter pylori SJM180 hypothetical protein YP_003929462.1 1613923 R 765962 CDS YP_003929463.1 308185330 9788309 complement(1614252..1615190) 1 NC_014560.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 1615190 9788309 HPSJM_07980 Helicobacter pylori SJM180 hypothetical protein YP_003929463.1 1614252 R 765962 CDS YP_003929464.1 308185331 9788310 complement(1615200..1616126) 1 NC_014560.1 COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 1616126 9788310 HPSJM_07985 Helicobacter pylori SJM180 hypothetical protein YP_003929464.1 1615200 R 765962 CDS YP_003929465.1 308185332 9788311 complement(1616126..1617295) 1 NC_014560.1 COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase 1617295 9788311 HPSJM_07990 Helicobacter pylori SJM180 folylpolyglutamate synthase YP_003929465.1 1616126 R 765962 CDS YP_003929466.1 308185333 9788312 complement(1617285..1617797) 1 NC_014560.1 hypothetical protein 1617797 9788312 HPSJM_07995 Helicobacter pylori SJM180 hypothetical protein YP_003929466.1 1617285 R 765962 CDS YP_003929467.1 308185334 9788313 complement(1617794..1620214) 1 NC_014560.1 COG0495 Leucyl-tRNA synthetase; leucyl-tRNA synthetase 1620214 leuS 9788313 leuS Helicobacter pylori SJM180 leucyl-tRNA synthetase YP_003929467.1 1617794 R 765962 CDS YP_003929468.1 308185335 9788314 complement(1620224..1620562) 1 NC_014560.1 integral membrane protein 1620562 9788314 HPSJM_08005 Helicobacter pylori SJM180 integral membrane protein YP_003929468.1 1620224 R 765962 CDS YP_003929469.1 308185336 9788315 complement(1620572..1621543) 1 NC_014560.1 COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 1621543 secF 9788315 secF Helicobacter pylori SJM180 preprotein translocase subunit SecF YP_003929469.1 1620572 R 765962 CDS YP_003929470.1 308185337 9788316 complement(1621552..1623132) 1 NC_014560.1 COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 1623132 secD 9788316 secD Helicobacter pylori SJM180 preprotein translocase subunit SecD YP_003929470.1 1621552 R 765962 CDS YP_003929471.1 308185338 9788317 complement(1623129..1623512) 1 NC_014560.1 COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 1623512 yajC 9788317 yajC Helicobacter pylori SJM180 preprotein translocase subunit YajC YP_003929471.1 1623129 R 765962 CDS YP_003929472.1 308185339 9788318 complement(1623560..1624876) 1 NC_014560.1 COG3004 Na+/H+ antiporter; Na(+)/H(+) antiporter nhaA 1624876 9788318 HPSJM_08025 Helicobacter pylori SJM180 Na(+)/H(+) antiporter nhaA YP_003929472.1 1623560 R 765962 CDS YP_003929473.1 308185340 9788319 complement(1624900..1627761) 1 NC_014560.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); putative recombination protein RecB 1627761 9788319 HPSJM_08030 Helicobacter pylori SJM180 putative recombination protein RecB YP_003929473.1 1624900 R 765962 CDS YP_003929474.1 308185341 9788320 1628012..1628806 1 NC_014560.1 COG0052 Ribosomal protein S2; 30S ribosomal protein S2 1628806 rpsB 9788320 rpsB Helicobacter pylori SJM180 30S ribosomal protein S2 YP_003929474.1 1628012 D 765962 CDS YP_003929475.1 308185342 9788321 1628806..1629873 1 NC_014560.1 COG0264 Translation elongation factor Ts; elongation factor Ts 1629873 tsf 9788321 tsf Helicobacter pylori SJM180 elongation factor Ts YP_003929475.1 1628806 D 765962 CDS YP_003929476.1 308185343 9788322 complement(1630320..1632167) 1 NC_014560.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; cell division protein 1632167 9788322 HPSJM_08045 Helicobacter pylori SJM180 cell division protein YP_003929476.1 1630320 R 765962 CDS YP_003929477.1 308185344 9788323 complement(1632323..1632652) 1 NC_014560.1 COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE 1632652 fliE 9788323 fliE Helicobacter pylori SJM180 flagellar hook-basal body protein FliE YP_003929477.1 1632323 R 765962 CDS YP_003929478.1 308185345 9788324 complement(1632779..1633264) 1 NC_014560.1 COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 1633264 flgC 9788324 flgC Helicobacter pylori SJM180 flagellar basal body rod protein FlgC YP_003929478.1 1632779 R 765962 CDS YP_003929479.1 308185346 9788325 complement(1633277..1633699) 1 NC_014560.1 COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 1633699 flgB 9788325 flgB Helicobacter pylori SJM180 flagellar basal body rod protein FlgB YP_003929479.1 1633277 R 765962 CDS YP_003929480.1 308185347 9788326 1633904..1635070 1 NC_014560.1 COG0772 Bacterial cell division membrane protein; probable cell division protein ftsW 1635070 9788326 HPSJM_08065 Helicobacter pylori SJM180 probable cell division protein ftsW YP_003929480.1 1633904 D 765962 CDS YP_003929481.1 308185348 9788327 complement(1635094..1636098) 1 NC_014560.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron(III) ABC transporter periplasmic iron-binding protein 1636098 9788327 HPSJM_08070 Helicobacter pylori SJM180 iron(III) ABC transporter periplasmic iron-binding protein YP_003929481.1 1635094 R 765962 CDS YP_003929482.1 308185349 9788328 1636337..1636933 1 NC_014560.1 COG0450 Peroxiredoxin; alkyl hydroperoxide reductase 1636933 9788328 HPSJM_08075 Helicobacter pylori SJM180 alkyl hydroperoxide reductase YP_003929482.1 1636337 D 765962 CDS YP_003929483.1 308185350 9788329 1637079..1637894 1 NC_014560.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; outer membrane protein 1637894 9788329 HPSJM_08080 Helicobacter pylori SJM180 outer membrane protein YP_003929483.1 1637079 D 765962 CDS YP_003929484.1 308185351 9788330 1637965..1638141 1 NC_014560.1 hypothetical protein 1638141 9788330 HPSJM_08085 Helicobacter pylori SJM180 hypothetical protein YP_003929484.1 1637965 D 765962 CDS YP_003929485.1 308185352 9788331 complement(1638386..1640152) 1 NC_014560.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 1640152 9788331 HPSJM_08090 Helicobacter pylori SJM180 penicillin-binding protein 2 YP_003929485.1 1638386 R 765962 CDS YP_003929486.1 308185353 9788332 complement(1640133..1640576) 1 NC_014560.1 hypothetical protein 1640576 9788332 HPSJM_08095 Helicobacter pylori SJM180 hypothetical protein YP_003929486.1 1640133 R 765962 CDS YP_003929487.1 308185354 9788333 complement(1640588..1641214) 1 NC_014560.1 COG0218 Predicted GTPase; ribosome biogenesis GTP-binding protein YsxC 1641214 engB 9788333 engB Helicobacter pylori SJM180 ribosome biogenesis GTP-binding protein YsxC YP_003929487.1 1640588 R 765962 CDS YP_003929488.1 308185355 9788334 complement(1641211..1641768) 1 NC_014560.1 COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein 1641768 9788334 HPSJM_08105 Helicobacter pylori SJM180 hypothetical protein YP_003929488.1 1641211 R 765962 CDS YP_003929489.1 308185356 9788335 complement(1641768..1642361) 1 NC_014560.1 hypothetical protein 1642361 9788335 HPSJM_08110 Helicobacter pylori SJM180 hypothetical protein YP_003929489.1 1641768 R 765962 CDS YP_003929490.1 308185357 9788336 complement(1642336..1642830) 1 NC_014560.1 COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) 1642830 9788336 HPSJM_08115 Helicobacter pylori SJM180 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) YP_003929490.1 1642336 R 765962 CDS YP_003929491.1 308185358 9788337 complement(1642827..1643771) 1 NC_014560.1 COG0797 Lipoproteins; rare lipoprotein A 1643771 9788337 HPSJM_08120 Helicobacter pylori SJM180 rare lipoprotein A YP_003929491.1 1642827 R 765962 CDS YP_003929492.1 308185359 9788338 complement(1643771..1644883) 1 NC_014560.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative regulatory protein 1644883 9788338 HPSJM_08125 Helicobacter pylori SJM180 putative regulatory protein YP_003929492.1 1643771 R 765962 CDS YP_003929493.1 308185360 9788339 complement(1644979..1645743) 1 NC_014560.1 COG0084 Mg-dependent DNase; Deoxyribonuclease 1645743 9788339 HPSJM_08130 Helicobacter pylori SJM180 Deoxyribonuclease YP_003929493.1 1644979 R 765962 CDS YP_003929494.1 308185361 9788340 1645819..1646439 1 NC_014560.1 COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 1646439 9788340 HPSJM_08135 Helicobacter pylori SJM180 riboflavin synthase subunit alpha YP_003929494.1 1645819 D 765962 CDS YP_003929495.1 308185362 9788341 1646440..1646712 1 NC_014560.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; ABC transporter, putative 1646712 9788341 HPSJM_08140 Helicobacter pylori SJM180 ABC transporter, putative YP_003929495.1 1646440 D 765962 CDS YP_003929496.1 308185363 9788342 1646734..1647717 1 NC_014560.1 COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 1647717 9788342 HPSJM_08145 Helicobacter pylori SJM180 DL-methionine transporter ATP-binding subunit YP_003929496.1 1646734 D 765962 CDS YP_003929497.1 308185364 9788343 1647719..1648366 1 NC_014560.1 COG2011 ABC-type metal ion transport system, permease component; ABC-type transport system, permease; putative D-and L-methionine transport protein; putative membrane protein 1648366 9788343 HPSJM_08150 Helicobacter pylori SJM180 ABC-type transport system, permease; putative D-and L-methionine transport protein; putative membrane protein YP_003929497.1 1647719 D 765962 CDS YP_003929498.1 308185365 9788344 complement(1648552..1648983) 1 NC_014560.1 hypothetical protein 1648983 9788344 HPSJM_08155 Helicobacter pylori SJM180 hypothetical protein YP_003929498.1 1648552 R 765962 CDS YP_003929499.1 308185366 9788345 complement(1648993..1649589) 1 NC_014560.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1649589 9788345 HPSJM_08160 Helicobacter pylori SJM180 hypothetical protein YP_003929499.1 1648993 R 765962 CDS YP_003929500.1 308185367 9788346 complement(1649589..1650596) 1 NC_014560.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase) 1650596 9788346 HPSJM_08165 Helicobacter pylori SJM180 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase) YP_003929500.1 1649589 R 765962 CDS YP_003929501.1 308185368 9788347 1650732..1651520 1 NC_014560.1 COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 1651520 9788347 HPSJM_08170 Helicobacter pylori SJM180 pyridoxine 5'-phosphate synthase YP_003929501.1 1650732 D 765962 CDS YP_003929502.1 308185369 9788348 1651522..1652445 1 NC_014560.1 COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 1652445 pdxA 9788348 pdxA Helicobacter pylori SJM180 4-hydroxythreonine-4-phosphate dehydrogenase YP_003929502.1 1651522 D 765962 CDS YP_003929503.1 308185370 9788349 1652510..1653532 1 NC_014560.1 COG0533 Metal-dependent proteases with possible chaperone activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1653532 9788349 HPSJM_08180 Helicobacter pylori SJM180 putative DNA-binding/iron metalloprotein/AP endonuclease YP_003929503.1 1652510 D 765962 CDS YP_003929504.1 308185371 9788350 1653709..1654497 1 NC_014560.1 flagellar basal body rod protein FlgG 1654497 flgG 9788350 flgG Helicobacter pylori SJM180 flagellar basal body rod protein FlgG YP_003929504.1 1653709 D 765962 CDS YP_003929505.1 308185372 9788351 complement(1654494..1654592) 1 NC_014560.1 COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1654592 9788351 HPSJM_08190 Helicobacter pylori SJM180 flagellar basal body rod protein FlgG YP_003929505.1 1654494 R 765962 CDS YP_003929506.1 308185373 9788352 complement(1655405..1655524) 1 NC_014560.1 hypothetical protein 1655524 9788352 HPSJM_08205 Helicobacter pylori SJM180 hypothetical protein YP_003929506.1 1655405 R 765962 CDS YP_003929507.1 308185374 9788353 complement(1655897..1656037) 1 NC_014560.1 hypothetical protein 1656037 9788353 HPSJM_08210 Helicobacter pylori SJM180 hypothetical protein YP_003929507.1 1655897 R 765962 CDS YP_003929508.1 308185375 9788354 complement(1656121..1656882) 1 NC_014560.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 1656882 9788354 HPSJM_08215 Helicobacter pylori SJM180 hypothetical protein YP_003929508.1 1656121 R 765962 CDS YP_003929509.1 308185376 9788355 complement(1657142..1657660) 1 NC_014560.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 1657660 9788355 HPSJM_08220 Helicobacter pylori SJM180 hypothetical protein YP_003929509.1 1657142 R 765962 CDS YP_003929510.1 308185377 9788356 complement(1657654..1657887) 1 NC_014560.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 1657887 9788356 HPSJM_08225 Helicobacter pylori SJM180 hypothetical protein YP_003929510.1 1657654 R 765962 CDS