-- dump date 20111121_012532 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 765962000001 SEQ_END SEQ_END NC_014560.1 1658051 1658051 DR NC_014560.1; contig end 1658051..1658051 Helicobacter pylori SJM180 YP_003927930.1 CDS nusB NC_014560.1 11 427 R COG0781 Transcription termination factor; transcription antitermination protein NusB complement(11..427) Helicobacter pylori SJM180 9788357 YP_003927931.1 CDS ribH NC_014560.1 429 899 R COG0054 Riboflavin synthase beta-chain; 6, 7-dimethyl-8-ribityllumazine synthase complement(429..899) Helicobacter pylori SJM180 9786735 YP_003927932.1 CDS HPSJM_00015 NC_014560.1 909 1739 R COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(909..1739) Helicobacter pylori SJM180 9786736 YP_003927933.1 CDS HPSJM_00020 NC_014560.1 1726 2391 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(1726..2391) Helicobacter pylori SJM180 9786737 YP_003927934.1 CDS HPSJM_00025 NC_014560.1 2513 3196 D COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2513..3196 Helicobacter pylori SJM180 9786738 YP_003927935.1 CDS panC NC_014560.1 3197 4027 D COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 3197..4027 Helicobacter pylori SJM180 9786739 YP_003927936.1 CDS HPSJM_00035 NC_014560.1 4922 5047 R hypothetical protein complement(4922..5047) Helicobacter pylori SJM180 9786745 YP_003927937.1 CDS HPSJM_00040 NC_014560.1 5036 5227 D hypothetical protein 5036..5227 Helicobacter pylori SJM180 9786746 YP_003927938.1 CDS HPSJM_00045 NC_014560.1 5210 5371 R hypothetical protein complement(5210..5371) Helicobacter pylori SJM180 9786747 YP_003927939.1 CDS HPSJM_00050 NC_014560.1 5396 7285 R putative Outer membrane protein complement(5396..7285) Helicobacter pylori SJM180 9786748 YP_003927940.1 CDS HPSJM_00055 NC_014560.1 7601 7696 D hypothetical protein 7601..7696 Helicobacter pylori SJM180 9786749 YP_003927941.1 CDS groEL NC_014560.1 7716 9356 R COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL complement(7716..9356) Helicobacter pylori SJM180 9786750 YP_003927942.1 CDS groES NC_014560.1 9382 9738 R COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES complement(9382..9738) Helicobacter pylori SJM180 9786751 YP_003927943.1 CDS dnaG NC_014560.1 10021 11700 D COG0358 DNA primase (bacterial type); DNA primase 10021..11700 Helicobacter pylori SJM180 9786752 YP_003927944.1 CDS HPSJM_00075 NC_014560.1 11697 12749 D COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; hypothetical protein 11697..12749 Helicobacter pylori SJM180 9786753 YP_003927945.1 CDS HPSJM_00080 NC_014560.1 12839 13666 D hypothetical protein 12839..13666 Helicobacter pylori SJM180 9786754 YP_003927946.1 CDS HPSJM_00085 NC_014560.1 13813 14094 D hypothetical protein 13813..14094 Helicobacter pylori SJM180 9786755 YP_003927947.1 CDS HPSJM_00090 NC_014560.1 14094 14357 D hypothetical protein 14094..14357 Helicobacter pylori SJM180 9786756 YP_003927948.1 CDS HPSJM_00095 NC_014560.1 14359 16722 D COG3451 Type IV secretory pathway, VirB4 components; hypothetical protein 14359..16722 Helicobacter pylori SJM180 9786757 YP_003927949.1 CDS HPSJM_00100 NC_014560.1 17027 18367 D COG3014 Uncharacterized protein conserved in bacteria; hypothetical protein 17027..18367 Helicobacter pylori SJM180 9786758 YP_003927950.1 CDS HPSJM_00105 NC_014560.1 18469 19434 D COG0835 Chemotaxis signal transduction protein; chemotaxis protein (cheV) 18469..19434 Helicobacter pylori SJM180 9786759 YP_003927951.1 CDS HPSJM_00110 NC_014560.1 19431 20648 D COG0019 Diaminopimelate decarboxylase; carboxynorspermidine decarboxylase 19431..20648 Helicobacter pylori SJM180 9786760 YP_003927952.1 CDS HPSJM_00115 NC_014560.1 20658 21230 R COG0671 Membrane-associated phospholipid phosphatase; lipid A 1-phosphatase complement(20658..21230) Helicobacter pylori SJM180 9786761 YP_003927953.1 CDS HPSJM_00120 NC_014560.1 21241 22812 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; lipid A phosphoethanolamine transferase complement(21241..22812) Helicobacter pylori SJM180 9786762 YP_003927954.1 CDS HPSJM_00125 NC_014560.1 22979 23071 D hypothetical protein 22979..23071 Helicobacter pylori SJM180 9786763 YP_003927955.1 CDS HPSJM_00130 NC_014560.1 23235 23405 R hypothetical protein complement(23235..23405) Helicobacter pylori SJM180 9786764 YP_003927956.1 CDS HPSJM_00135 NC_014560.1 23389 25464 R outer membrane protein HopD complement(23389..25464) Helicobacter pylori SJM180 9786765 YP_003927957.1 CDS HPSJM_00140 NC_014560.1 25686 25778 D hypothetical protein 25686..25778 Helicobacter pylori SJM180 9786766 YP_003927958.1 CDS HPSJM_00145 NC_014560.1 25937 26044 D hypothetical protein 25937..26044 Helicobacter pylori SJM180 9786767 YP_003927959.1 CDS gltA NC_014560.1 26087 27367 R COG0372 Citrate synthase; type II citrate synthase complement(26087..27367) Helicobacter pylori SJM180 9786768 YP_003927960.1 CDS HPSJM_00155 NC_014560.1 27565 28842 D COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 27565..28842 Helicobacter pylori SJM180 9786769 YP_003927961.1 CDS HPSJM_00160 NC_014560.1 28910 29437 D hypothetical protein 28910..29437 Helicobacter pylori SJM180 9786770 YP_003927962.1 CDS HPSJM_00165 NC_014560.1 29414 30070 R COG0132 Dethiobiotin synthetase; dethiobiotin synthetase complement(29414..30070) Helicobacter pylori SJM180 9786771 YP_003927963.1 CDS HPSJM_00170 NC_014560.1 30074 31882 R hypothetical protein complement(30074..31882) Helicobacter pylori SJM180 9786772 YP_003927964.1 CDS HPSJM_00175 NC_014560.1 31993 32406 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; putative universal stress global response regulator UspA 31993..32406 Helicobacter pylori SJM180 9786773 YP_003927965.1 CDS HPSJM_00180 NC_014560.1 32408 32683 D COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adapter protein clpS 32408..32683 Helicobacter pylori SJM180 9786774 YP_003927966.1 CDS HPSJM_00185 NC_014560.1 32683 34911 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent protease, ATP-binding subunit 32683..34911 Helicobacter pylori SJM180 9786775 YP_003927967.1 CDS HPSJM_00190 NC_014560.1 34901 35254 D COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 34901..35254 Helicobacter pylori SJM180 9786776 YP_003927968.1 CDS HPSJM_00195 NC_014560.1 35257 35559 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 35257..35559 Helicobacter pylori SJM180 9786777 YP_003927969.1 CDS HPSJM_00200 NC_014560.1 35559 36554 D COG1199 Rad3-related DNA helicases; hypothetical protein 35559..36554 Helicobacter pylori SJM180 9786778 YP_003927970.1 CDS HPSJM_00205 NC_014560.1 36562 37617 D NADH-ubiquinone oxidoreductase subunit 36562..37617 Helicobacter pylori SJM180 9786779 YP_003927971.1 CDS HPSJM_00210 NC_014560.1 37633 37746 D Comb7 competence protein 37633..37746 Helicobacter pylori SJM180 9786780 YP_003927972.1 CDS HPSJM_00215 NC_014560.1 37743 38486 D COG3736 Type IV secretory pathway, component VirB8; comB8 competence protein 37743..38486 Helicobacter pylori SJM180 9786781 YP_003927973.1 CDS HPSJM_00220 NC_014560.1 38486 39466 D COG3504 Type IV secretory pathway, VirB9 components; ComB9 competence protein 38486..39466 Helicobacter pylori SJM180 9786782 YP_003927974.1 CDS HPSJM_00225 NC_014560.1 39459 40595 D COG2948 Type IV secretory pathway, VirB10 components; ComB10 competence protein 39459..40595 Helicobacter pylori SJM180 9786783 YP_003927975.1 CDS HPSJM_00230 NC_014560.1 40665 42077 D COG0836 Mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase 40665..42077 Helicobacter pylori SJM180 9786784 YP_003927976.1 CDS HPSJM_00235 NC_014560.1 42106 43251 D COG1089 GDP-D-mannose dehydratase; GDP-D-mannose dehydratase 42106..43251 Helicobacter pylori SJM180 9786785 YP_003927977.1 CDS HPSJM_00240 NC_014560.1 43244 44176 D COG0451 Nucleoside-diphosphate-sugar epimerases; nodulation protein (nolK) 43244..44176 Helicobacter pylori SJM180 9786786 YP_003927978.1 CDS HPSJM_00245 NC_014560.1 44296 44415 D hypothetical protein 44296..44415 Helicobacter pylori SJM180 9786787 YP_003927979.1 CDS HPSJM_00250 NC_014560.1 44817 44918 R hypothetical protein complement(44817..44918) Helicobacter pylori SJM180 9786788 YP_003927980.1 CDS HPSJM_00255 NC_014560.1 45037 46035 R COG0309 Hydrogenase maturation factor; hydrogenase expression/formation protein complement(45037..46035) Helicobacter pylori SJM180 9786789 YP_003927981.1 CDS HPSJM_00260 NC_014560.1 46038 48290 R COG0068 Hydrogenase maturation factor; Hydrogenase maturation protein HypF complement(46038..48290) Helicobacter pylori SJM180 9786790 YP_003927982.1 CDS HPSJM_00265 NC_014560.1 48287 49279 R COG2957 Peptidylarginine deiminase and related enzymes; hypothetical protein complement(48287..49279) Helicobacter pylori SJM180 9786791 YP_003927983.1 CDS HPSJM_00270 NC_014560.1 49331 50029 R COG0863 DNA modification methylase; adenine specific DNA methyltransferase (dpnA) complement(49331..50029) Helicobacter pylori SJM180 9786792 YP_003927984.1 CDS HPSJM_00275 NC_014560.1 50026 51093 R COG0270 Site-specific DNA methylase; cytosine specific DNA methyltransferase complement(50026..51093) Helicobacter pylori SJM180 9786793 YP_003927985.1 CDS HPSJM_00290 NC_014560.1 52491 53750 R hypothetical protein complement(52491..53750) Helicobacter pylori SJM180 9786794 YP_003927986.1 CDS HPSJM_00295 NC_014560.1 53750 56218 R COG0270 Site-specific DNA methylase; adenine/cytosine DNA methyltransferase complement(53750..56218) Helicobacter pylori SJM180 9786795 YP_003927987.1 CDS HPSJM_00300 NC_014560.1 56260 57750 R COG0591 Na+/proline symporter; sodium/proline symporter complement(56260..57750) Helicobacter pylori SJM180 9786796 YP_003927988.1 CDS HPSJM_00305 NC_014560.1 57777 61334 R COG0506 Proline dehydrogenase; Proline/pyrroline-5-carboxylate dehydrogenase complement(57777..61334) Helicobacter pylori SJM180 9786797 YP_003927989.1 CDS HPSJM_00310 NC_014560.1 61663 61872 D hypothetical protein 61663..61872 Helicobacter pylori SJM180 9786798 YP_003927990.1 CDS HPSJM_00315 NC_014560.1 61985 62083 D hypothetical protein 61985..62083 Helicobacter pylori SJM180 9786799 YP_003927991.1 CDS HPSJM_00320 NC_014560.1 62490 63170 D hypothetical protein 62490..63170 Helicobacter pylori SJM180 9786800 YP_003927992.1 CDS HPSJM_00325 NC_014560.1 63171 64013 D hypothetical protein 63171..64013 Helicobacter pylori SJM180 9786801 YP_003927993.1 CDS HPSJM_00330 NC_014560.1 64308 64490 D hypothetical protein 64308..64490 Helicobacter pylori SJM180 9786802 YP_003927994.1 CDS HPSJM_00350 NC_014560.1 66921 67490 D hypothetical protein 66921..67490 Helicobacter pylori SJM180 9786803 YP_003927995.1 CDS HPSJM_00355 NC_014560.1 67506 67766 D hypothetical protein 67506..67766 Helicobacter pylori SJM180 9786804 YP_003927996.1 CDS HPSJM_00370 NC_014560.1 69226 69645 D hypothetical protein 69226..69645 Helicobacter pylori SJM180 9786805 YP_003927997.1 CDS HPSJM_00375 NC_014560.1 69647 69997 D hypothetical protein 69647..69997 Helicobacter pylori SJM180 9786806 YP_003927998.1 CDS HPSJM_00390 NC_014560.1 72564 73361 R COG0829 Urease accessory protein UreH; urease accessory protein UreH complement(72564..73361) Helicobacter pylori SJM180 9786807 YP_003927999.1 CDS HPSJM_00395 NC_014560.1 73361 73960 R COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; Urease accessory protein UreG complement(73361..73960) Helicobacter pylori SJM180 9786808 YP_003928000.1 CDS HPSJM_00400 NC_014560.1 73989 74753 R COG0830 Urease accessory protein UreF; urease accessory protein (ureF) complement(73989..74753) Helicobacter pylori SJM180 9786809 YP_003928001.1 CDS ureE NC_014560.1 74765 75277 R COG2371 Urease accessory protein UreE; urease accessory protein UreE complement(74765..75277) Helicobacter pylori SJM180 9786810 YP_003928002.1 CDS HPSJM_00410 NC_014560.1 75279 75866 R COG1138 Cytochrome c biogenesis factor; urease accessory protein / pH-dependent urea-transporter complement(75279..75866) Helicobacter pylori SJM180 9786811 YP_003928003.1 CDS ureB NC_014560.1 76111 77820 R COG0804 Urea amidohydrolase (urease) alpha subunit; urease subunit beta complement(76111..77820) Helicobacter pylori SJM180 9786812 YP_003928004.1 CDS HPSJM_00420 NC_014560.1 77824 78540 R COG0831 Urea amidohydrolase (urease) gamma subunit; urease subunit alpha complement(77824..78540) Helicobacter pylori SJM180 9786813 YP_003928005.1 CDS lspA NC_014560.1 78886 79359 R COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase complement(78886..79359) Helicobacter pylori SJM180 9786815 YP_003928006.1 CDS glmM NC_014560.1 79353 80690 R COG1109 Phosphomannomutase; phosphoglucosamine mutase complement(79353..80690) Helicobacter pylori SJM180 9786816 YP_003928007.1 CDS rpsT NC_014560.1 80780 81049 D COG0268 Ribosomal protein S20; 30S ribosomal protein S20 80780..81049 Helicobacter pylori SJM180 9786817 YP_003928008.1 CDS prfA NC_014560.1 81176 82234 D COG0216 Protein chain release factor A; peptide chain release factor 1 81176..82234 Helicobacter pylori SJM180 9786818 YP_003928009.1 CDS HPSJM_00450 NC_014560.1 82624 82881 D hypothetical protein 82624..82881 Helicobacter pylori SJM180 9786819 YP_003928010.1 CDS HPSJM_00455 NC_014560.1 82893 84329 D outer membrane protein HorA 82893..84329 Helicobacter pylori SJM180 9786820 YP_003928011.1 CDS HPSJM_00460 NC_014560.1 84573 86348 D hypothetical protein 84573..86348 Helicobacter pylori SJM180 9786821 YP_003928012.1 CDS HPSJM_00465 NC_014560.1 86501 86629 D hypothetical protein 86501..86629 Helicobacter pylori SJM180 9786822 YP_003928013.1 CDS HPSJM_00470 NC_014560.1 86786 88807 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein (MCP) complement(86786..88807) Helicobacter pylori SJM180 9786823 YP_003928014.1 CDS rpsI NC_014560.1 88960 89349 R COG0103 Ribosomal protein S9; 30S ribosomal protein S9 complement(88960..89349) Helicobacter pylori SJM180 9786824 YP_003928015.1 CDS rplM NC_014560.1 89346 89771 R COG0102 Ribosomal protein L13; 50S ribosomal protein L13 complement(89346..89771) Helicobacter pylori SJM180 9786825 YP_003928016.1 CDS HPSJM_00485 NC_014560.1 90123 90311 R hypothetical protein complement(90123..90311) Helicobacter pylori SJM180 9786826 YP_003928017.1 CDS HPSJM_00490 NC_014560.1 90317 91669 R COG0579 Predicted dehydrogenase; Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO) complement(90317..91669) Helicobacter pylori SJM180 9786827 YP_003928018.1 CDS HPSJM_00495 NC_014560.1 91723 93096 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein complement(91723..93096) Helicobacter pylori SJM180 9786828 YP_003928019.1 CDS HPSJM_00500 NC_014560.1 93116 95155 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD complement(93116..95155) Helicobacter pylori SJM180 9786829 YP_003928020.1 CDS HPSJM_00505 NC_014560.1 95352 96047 R COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(95352..96047) Helicobacter pylori SJM180 9786830 YP_003928021.1 CDS HPSJM_00510 NC_014560.1 96058 96987 R COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(96058..96987) Helicobacter pylori SJM180 9786831 YP_003928022.1 CDS HPSJM_00520 NC_014560.1 97426 98436 D COG2958 Uncharacterized protein conserved in bacteria; HrgA protein 97426..98436 Helicobacter pylori SJM180 9786833 YP_003928023.1 CDS HPSJM_00525 NC_014560.1 98440 99261 D COG0863 DNA modification methylase; M.HpyAIII, type II adenine methyltransferase 98440..99261 Helicobacter pylori SJM180 9786834 YP_003928024.1 CDS HPSJM_00540 NC_014560.1 100284 100814 R COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; hypothetical protein complement(100284..100814) Helicobacter pylori SJM180 9786835 YP_003928025.1 CDS HPSJM_00545 NC_014560.1 100887 101831 D COG1052 Lactate dehydrogenase and related dehydrogenases; 2-hydroxyacid dehydrogenase 100887..101831 Helicobacter pylori SJM180 9786836 YP_003928026.1 CDS HPSJM_00550 NC_014560.1 102017 102730 R hypothetical protein complement(102017..102730) Helicobacter pylori SJM180 9786837 YP_003928027.1 CDS HPSJM_00555 NC_014560.1 102834 104294 R COG0498 Threonine synthase; threonine synthase complement(102834..104294) Helicobacter pylori SJM180 9786838 YP_003928028.1 CDS HPSJM_00560 NC_014560.1 104489 106516 D COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein (tlpA) 104489..106516 Helicobacter pylori SJM180 9786839 YP_003928029.1 CDS HPSJM_00565 NC_014560.1 106516 107622 D COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein 106516..107622 Helicobacter pylori SJM180 9786840 YP_003928030.1 CDS HPSJM_00570 NC_014560.1 107739 108500 D hypothetical protein 107739..108500 Helicobacter pylori SJM180 9786841 YP_003928031.1 CDS HPSJM_00575 NC_014560.1 108483 109262 R COG0463 Glycosyltransferases involved in cell wall biogenesis; hypothetical protein complement(108483..109262) Helicobacter pylori SJM180 9786842 YP_003928032.1 CDS HPSJM_00580 NC_014560.1 109295 110992 R COG0840 Methyl-accepting chemotaxis protein; Methyl-accepting chemotaxis protein tlpB; putative signal peptide complement(109295..110992) Helicobacter pylori SJM180 9786843 YP_003928033.1 CDS HPSJM_00585 NC_014560.1 111180 112925 R COG0737 5'-nucleotidase/2', 3'-cyclic phosphodiesterase and related esterases; 2', 3'-cyclic-nucleotide 2'-phosphodiesterase complement(111180..112925) Helicobacter pylori SJM180 9786844 YP_003928034.1 CDS HPSJM_00590 NC_014560.1 113068 113526 R COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase complement(113068..113526) Helicobacter pylori SJM180 9786845 YP_003928035.1 CDS HPSJM_00595 NC_014560.1 113564 114706 R COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase/cystathionine beta-lyase complement(113564..114706) Helicobacter pylori SJM180 9786846 YP_003928036.1 CDS HPSJM_00600 NC_014560.1 114727 115644 R COG0031 Cysteine synthase; cysteine synthetase complement(114727..115644) Helicobacter pylori SJM180 9786847 YP_003928037.1 CDS HPSJM_00605 NC_014560.1 115763 116341 D hypothetical protein 115763..116341 Helicobacter pylori SJM180 9786848 YP_003928038.1 CDS dnaK NC_014560.1 116594 118456 R COG0443 Molecular chaperone; molecular chaperone DnaK complement(116594..118456) Helicobacter pylori SJM180 9786849 YP_003928039.1 CDS HPSJM_00615 NC_014560.1 118488 119060 R COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE complement(118488..119060) Helicobacter pylori SJM180 9786850 YP_003928040.1 CDS HPSJM_00620 NC_014560.1 119060 119890 R COG1420 Transcriptional regulator of heat shock gene; heat-inducible transcription repressor complement(119060..119890) Helicobacter pylori SJM180 9786851 YP_003928041.1 CDS HPSJM_00625 NC_014560.1 120099 120737 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 120099..120737 Helicobacter pylori SJM180 9786852 YP_003928042.1 CDS HPSJM_00630 NC_014560.1 120758 121054 D hypothetical protein 120758..121054 Helicobacter pylori SJM180 9786853 YP_003928043.1 CDS HPSJM_00635 NC_014560.1 121087 122970 R COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein complement(121087..122970) Helicobacter pylori SJM180 9786854 YP_003928044.1 CDS HPSJM_00640 NC_014560.1 123031 124575 R COG1344 Flagellin and related hook-associated proteins; flagellin B complement(123031..124575) Helicobacter pylori SJM180 9786855 YP_003928045.1 CDS HPSJM_00645 NC_014560.1 124741 126951 D COG0550 Topoisomerase IA; DNA topoisomerase I 124741..126951 Helicobacter pylori SJM180 9786856 YP_003928046.1 CDS HPSJM_00650 NC_014560.1 126944 127870 D COG0731 Fe-S oxidoreductases; hypothetical protein 126944..127870 Helicobacter pylori SJM180 9786857 YP_003928047.1 CDS HPSJM_00655 NC_014560.1 128021 129280 R hypothetical protein complement(128021..129280) Helicobacter pylori SJM180 9786858 YP_003928048.1 CDS HPSJM_00660 NC_014560.1 129377 131815 R COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase complement(129377..131815) Helicobacter pylori SJM180 9786859 YP_003928049.1 CDS HPSJM_00665 NC_014560.1 132018 132131 D hypothetical protein 132018..132131 Helicobacter pylori SJM180 9786860 YP_003928050.1 CDS thrS NC_014560.1 132173 134011 D COG0441 Threonyl-tRNA synthetase; threonyl-tRNA synthetase 132173..134011 Helicobacter pylori SJM180 9786861 YP_003928051.1 CDS infC NC_014560.1 134008 134619 D COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 134008..134619 Helicobacter pylori SJM180 9786862 YP_003928052.1 CDS rpmI NC_014560.1 134600 134794 D COG0291 Ribosomal protein L35; 50S ribosomal protein L35 134600..134794 Helicobacter pylori SJM180 9786863 YP_003928053.1 CDS rplT NC_014560.1 134889 135239 D COG0292 Ribosomal protein L20; 50S ribosomal protein L20 134889..135239 Helicobacter pylori SJM180 9786864 YP_003928054.1 CDS HPSJM_00690 NC_014560.1 135440 136300 D outer membrane protein HorB 135440..136300 Helicobacter pylori SJM180 9786865 YP_003928055.1 CDS HPSJM_00695 NC_014560.1 136352 136471 D hypothetical protein 136352..136471 Helicobacter pylori SJM180 9786866 YP_003928056.1 CDS HPSJM_00700 NC_014560.1 136647 137078 D hypothetical protein 136647..137078 Helicobacter pylori SJM180 9786867 YP_003928057.1 CDS HPSJM_00705 NC_014560.1 137487 138344 D hypothetical protein 137487..138344 Helicobacter pylori SJM180 9786868 YP_003928058.1 CDS HPSJM_00710 NC_014560.1 138417 138617 R hypothetical protein complement(138417..138617) Helicobacter pylori SJM180 9786869 YP_003928059.1 CDS HPSJM_00715 NC_014560.1 139241 140608 R COG1760 L-serine deaminase; L-serine dehydratase complement(139241..140608) Helicobacter pylori SJM180 9786870 YP_003928060.1 CDS HPSJM_00720 NC_014560.1 140608 141849 R COG0814 Amino acid permeases; hypothetical protein complement(140608..141849) Helicobacter pylori SJM180 9786871 YP_003928061.1 CDS HPSJM_00725 NC_014560.1 141912 142004 D hypothetical protein 141912..142004 Helicobacter pylori SJM180 9786872 YP_003928062.1 CDS HPSJM_00730 NC_014560.1 142031 143380 D COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 142031..143380 Helicobacter pylori SJM180 9786873 YP_003928063.1 CDS HPSJM_00735 NC_014560.1 143459 143593 D hypothetical protein 143459..143593 Helicobacter pylori SJM180 9786874 YP_003928064.1 CDS HPSJM_00740 NC_014560.1 143695 143838 D hypothetical protein 143695..143838 Helicobacter pylori SJM180 9786875 YP_003928065.1 CDS HPSJM_00745 NC_014560.1 143824 144282 R COG1225 Peroxiredoxin; bacterioferritin comigratory protein complement(143824..144282) Helicobacter pylori SJM180 9786876 YP_003928066.1 CDS HPSJM_00750 NC_014560.1 144292 144927 R COG1556 Uncharacterized conserved protein; hypothetical protein complement(144292..144927) Helicobacter pylori SJM180 9786877 YP_003928067.1 CDS HPSJM_00755 NC_014560.1 144920 146365 R COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster binding protein complement(144920..146365) Helicobacter pylori SJM180 9786878 YP_003928068.1 CDS HPSJM_00760 NC_014560.1 146394 147122 R COG0247 Fe-S oxidoreductase; Fe-S oxidoreductase complement(146394..147122) Helicobacter pylori SJM180 9786879 YP_003928069.1 CDS HPSJM_00765 NC_014560.1 147343 148992 D COG1620 L-lactate permease; L-lactate permease 147343..148992 Helicobacter pylori SJM180 9786880 YP_003928070.1 CDS HPSJM_00770 NC_014560.1 149048 150703 D COG1620 L-lactate permease; L-lactate permease 149048..150703 Helicobacter pylori SJM180 9786881 YP_003928071.1 CDS HPSJM_00775 NC_014560.1 150727 151596 R COG1194 A/G-specific DNA glycosylase; DNA glycosylase MutY complement(150727..151596) Helicobacter pylori SJM180 9786882 YP_003928072.1 CDS HPSJM_00780 NC_014560.1 151714 153162 R COG0471 Di- and tricarboxylate transporters; hypothetical protein complement(151714..153162) Helicobacter pylori SJM180 9786883 YP_003928073.1 CDS HPSJM_00785 NC_014560.1 153332 154798 D COG3278 Cbb3-type cytochrome oxidase, subunit 1; cbb3-type cytochrome c oxidase subunit I 153332..154798 Helicobacter pylori SJM180 9786884 YP_003928074.1 CDS HPSJM_00790 NC_014560.1 154811 155509 D COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; cbb3-type cytochrome c oxidase subunit II 154811..155509 Helicobacter pylori SJM180 9786885 YP_003928075.1 CDS HPSJM_00795 NC_014560.1 155520 155738 D cytochrome c oxidase subunit Q 155520..155738 Helicobacter pylori SJM180 9786886 YP_003928076.1 CDS HPSJM_00800 NC_014560.1 155740 156618 D COG2010 Cytochrome c, mono- and diheme variants; cytochrome c oxidase, cbb3-type, subunit III 155740..156618 Helicobacter pylori SJM180 9786887 YP_003928077.1 CDS HPSJM_00805 NC_014560.1 156629 156835 D hypothetical protein 156629..156835 Helicobacter pylori SJM180 9786888 YP_003928078.1 CDS HPSJM_00810 NC_014560.1 156832 156939 D hypothetical protein 156832..156939 Helicobacter pylori SJM180 9786889 YP_003928079.1 CDS HPSJM_00815 NC_014560.1 156936 157520 D COG0443 Molecular chaperone; hypothetical protein 156936..157520 Helicobacter pylori SJM180 9786890 YP_003928080.1 CDS HPSJM_00820 NC_014560.1 157534 158115 D hypothetical protein 157534..158115 Helicobacter pylori SJM180 9786891 YP_003928081.1 CDS HPSJM_00825 NC_014560.1 158203 158970 D hypothetical protein 158203..158970 Helicobacter pylori SJM180 9786892 YP_003928082.1 CDS HPSJM_00830 NC_014560.1 158967 159830 R COG2107 Predicted periplasmic solute-binding protein; hypothetical protein complement(158967..159830) Helicobacter pylori SJM180 9786893 YP_003928083.1 CDS recA NC_014560.1 159930 160973 D COG0468 RecA/RadA recombinase; recombinase A 159930..160973 Helicobacter pylori SJM180 9786894 YP_003928084.1 CDS eno NC_014560.1 160986 162266 D COG0148 Enolase; phosphopyruvate hydratase 160986..162266 Helicobacter pylori SJM180 9786895 YP_003928085.1 CDS HPSJM_00845 NC_014560.1 162259 162534 D hypothetical protein 162259..162534 Helicobacter pylori SJM180 9786896 YP_003928086.1 CDS HPSJM_00850 NC_014560.1 162551 163147 D hypothetical protein 162551..163147 Helicobacter pylori SJM180 9786897 YP_003928087.1 CDS aroK NC_014560.1 163152 163640 D COG0703 Shikimate kinase; shikimate kinase 163152..163640 Helicobacter pylori SJM180 9786898 YP_003928088.1 CDS HPSJM_00860 NC_014560.1 163662 164618 D general glycosylation pathway protein 163662..164618 Helicobacter pylori SJM180 9786899 YP_003928089.1 CDS HPSJM_00865 NC_014560.1 164615 165718 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide1, 2-glycosyltransferase complement(164615..165718) Helicobacter pylori SJM180 9786900 YP_003928090.1 CDS HPSJM_00870 NC_014560.1 165871 166791 D COG0790 FOG: TPR repeat, SEL1 subfamily; Cystein-rich protein D 165871..166791 Helicobacter pylori SJM180 9786901 YP_003928091.1 CDS HPSJM_00875 NC_014560.1 167160 167258 D hypothetical protein 167160..167258 Helicobacter pylori SJM180 9786902 YP_003928092.1 CDS HPSJM_00880 NC_014560.1 167329 168051 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(167329..168051) Helicobacter pylori SJM180 9786903 YP_003928093.1 CDS HPSJM_00885 NC_014560.1 168052 169023 R COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase complement(168052..169023) Helicobacter pylori SJM180 9786904 YP_003928094.1 CDS HPSJM_00890 NC_014560.1 169045 170373 R COG0642 Signal transduction histidine kinase; Histidine kinase sensor protein; putative signal peptide complement(169045..170373) Helicobacter pylori SJM180 9786905 YP_003928095.1 CDS HPSJM_00895 NC_014560.1 170399 171076 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Transcriptional regulator complement(170399..171076) Helicobacter pylori SJM180 9786906 YP_003928096.1 CDS HPSJM_00900 NC_014560.1 171482 171940 R hypothetical protein complement(171482..171940) Helicobacter pylori SJM180 9786907 YP_003928097.1 CDS HPSJM_00905 NC_014560.1 171931 172194 R COG0457 FOG: TPR repeat; hypothetical protein complement(171931..172194) Helicobacter pylori SJM180 9786908 YP_003928098.1 CDS HPSJM_00910 NC_014560.1 172227 173507 R COG0826 Collagenase and related proteases; collagenase complement(172227..173507) Helicobacter pylori SJM180 9786909 YP_003928099.1 CDS HPSJM_00915 NC_014560.1 173533 174264 R hypothetical protein complement(173533..174264) Helicobacter pylori SJM180 9786910 YP_003928100.1 CDS prfB NC_014560.1 174339 175430 R COG1186 Protein chain release factor B; peptide chain release factor 2 complement(174339..175430) Helicobacter pylori SJM180 9786911 YP_003928101.1 CDS HPSJM_00925 NC_014560.1 175491 176666 R COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein complement(175491..176666) Helicobacter pylori SJM180 9786912 YP_003928102.1 CDS fliR NC_014560.1 176676 177443 R COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR complement(176676..177443) Helicobacter pylori SJM180 9786913 YP_003928103.1 CDS HPSJM_00935 NC_014560.1 177437 178165 R hypothetical protein complement(177437..178165) Helicobacter pylori SJM180 9786914 YP_003928104.1 CDS HPSJM_00940 NC_014560.1 178271 178489 R hypothetical protein complement(178271..178489) Helicobacter pylori SJM180 9786915 YP_003928105.1 CDS HPSJM_00945 NC_014560.1 178636 179535 D COG0760 Parvulin-like peptidyl-prolyl isomerase; putative peptidyl-prolyl cis-trans isomerase 178636..179535 Helicobacter pylori SJM180 9786916 YP_003928106.1 CDS HPSJM_00950 NC_014560.1 179552 180475 D COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 179552..180475 Helicobacter pylori SJM180 9786917 YP_003928107.1 CDS HPSJM_00955 NC_014560.1 180497 181060 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 180497..181060 Helicobacter pylori SJM180 9786918 YP_003928108.1 CDS HPSJM_00960 NC_014560.1 181561 182805 D COG0270 Site-specific DNA methylase; DNA-cytosine methyltransferase 181561..182805 Helicobacter pylori SJM180 9786919 YP_003928109.1 CDS HPSJM_00965 NC_014560.1 182792 183562 D hypothetical protein 182792..183562 Helicobacter pylori SJM180 9786920 YP_003928110.1 CDS HPSJM_00970 NC_014560.1 183537 184883 D COG1401 GTPase subunit of restriction endonuclease; putative restriction enzyme 183537..184883 Helicobacter pylori SJM180 9786921 YP_003928111.1 CDS HPSJM_00975 NC_014560.1 184876 186090 D hypothetical protein 184876..186090 Helicobacter pylori SJM180 9786922 YP_003928112.1 CDS HPSJM_00980 NC_014560.1 186160 187188 R COG2089 Sialic acid synthase; sialic acid synthase complement(186160..187188) Helicobacter pylori SJM180 9786923 YP_003928113.1 CDS HPSJM_00985 NC_014560.1 187192 187833 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein complement(187192..187833) Helicobacter pylori SJM180 9786924 YP_003928114.1 CDS HPSJM_00990 NC_014560.1 187833 189107 R COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(187833..189107) Helicobacter pylori SJM180 9786925 YP_003928115.1 CDS HPSJM_00995 NC_014560.1 189332 190033 D COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 189332..190033 Helicobacter pylori SJM180 9786926 YP_003928116.1 CDS lysS NC_014560.1 190043 191548 D COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 190043..191548 Helicobacter pylori SJM180 9786927 YP_003928117.1 CDS HPSJM_01005 NC_014560.1 191548 192798 D COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 191548..192798 Helicobacter pylori SJM180 9786928 YP_003928118.1 CDS HPSJM_01010 NC_014560.1 192809 193351 D hypothetical protein 192809..193351 Helicobacter pylori SJM180 9786929 YP_003928119.1 CDS HPSJM_01015 NC_014560.1 193373 194182 D hypothetical protein 193373..194182 Helicobacter pylori SJM180 9786930 YP_003928120.1 CDS HPSJM_01020 NC_014560.1 194579 195832 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(194579..195832) Helicobacter pylori SJM180 9786931 YP_003928121.1 CDS HPSJM_01025 NC_014560.1 195829 196278 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(195829..196278) Helicobacter pylori SJM180 9786932 YP_003928122.1 CDS HPSJM_01030 NC_014560.1 196437 196970 D COG2862 Predicted membrane protein; hypothetical protein 196437..196970 Helicobacter pylori SJM180 9786933 YP_003928123.1 CDS HPSJM_01035 NC_014560.1 196976 198484 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; phospholipase D-family protein complement(196976..198484) Helicobacter pylori SJM180 9786934 YP_003928124.1 CDS frdB NC_014560.1 198501 199238 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit complement(198501..199238) Helicobacter pylori SJM180 9786935 YP_003928125.1 CDS HPSJM_01045 NC_014560.1 199231 201375 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(199231..201375) Helicobacter pylori SJM180 9786936 YP_003928126.1 CDS HPSJM_01050 NC_014560.1 201385 202152 R COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; fumarate reductase cytochrome b-556 subunit complement(201385..202152) Helicobacter pylori SJM180 9786937 YP_003928127.1 CDS tpiA NC_014560.1 202365 203069 D COG0149 Triosephosphate isomerase; triosephosphate isomerase 202365..203069 Helicobacter pylori SJM180 9786938 YP_003928128.1 CDS HPSJM_01060 NC_014560.1 203079 203912 D COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl carrier protein) reductase 203079..203912 Helicobacter pylori SJM180 9786939 YP_003928129.1 CDS lpxD NC_014560.1 203912 204922 D COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 203912..204922 Helicobacter pylori SJM180 9786940 YP_003928130.1 CDS HPSJM_01070 NC_014560.1 204987 206144 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 204987..206144 Helicobacter pylori SJM180 9786941 YP_003928131.1 CDS ndk NC_014560.1 206211 206624 D COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase 206211..206624 Helicobacter pylori SJM180 9786942 YP_003928132.1 CDS HPSJM_01080 NC_014560.1 206649 207005 D hypothetical protein 206649..207005 Helicobacter pylori SJM180 9786943 YP_003928133.1 CDS rpmF NC_014560.1 207021 207167 D COG0333 Ribosomal protein L32; 50S ribosomal protein L32 207021..207167 Helicobacter pylori SJM180 9786944 YP_003928134.1 CDS HPSJM_01090 NC_014560.1 207245 208264 D COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 207245..208264 Helicobacter pylori SJM180 9786945 YP_003928135.1 CDS HPSJM_01095 NC_014560.1 208288 209280 D COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-(acyl carrier protein) synthase III 208288..209280 Helicobacter pylori SJM180 9786946 YP_003928136.1 CDS HPSJM_01100 NC_014560.1 209301 209603 D hypothetical protein 209301..209603 Helicobacter pylori SJM180 9786947 YP_003928137.1 CDS HPSJM_01105 NC_014560.1 209745 209837 D hypothetical protein 209745..209837 Helicobacter pylori SJM180 9786948 YP_003928138.1 CDS HPSJM_01110 NC_014560.1 210274 210657 R hypothetical protein complement(210274..210657) Helicobacter pylori SJM180 9786949 YP_003928139.1 CDS HPSJM_01125 NC_014560.1 213924 215030 D COG0489 ATPases involved in chromosome partitioning; ATP-binding protein 213924..215030 Helicobacter pylori SJM180 9786950 YP_003928140.1 CDS HPSJM_01130 NC_014560.1 215045 216076 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; LPS 1, 2-glycosyltransferase complement(215045..216076) Helicobacter pylori SJM180 9786951 YP_003928141.1 CDS HPSJM_01135 NC_014560.1 216087 216215 R LPS 1, 2-glycosyltransferase complement(216087..216215) Helicobacter pylori SJM180 9786952 YP_003928142.1 CDS HPSJM_01140 NC_014560.1 216369 217721 D hypothetical protein 216369..217721 Helicobacter pylori SJM180 9786953 YP_003928143.1 CDS HPSJM_01145 NC_014560.1 217826 219691 D COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 217826..219691 Helicobacter pylori SJM180 9786954 YP_003928144.1 CDS HPSJM_01150 NC_014560.1 219738 219878 R hypothetical protein complement(219738..219878) Helicobacter pylori SJM180 9786955 YP_003928145.1 CDS HPSJM_01155 NC_014560.1 220027 220779 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(220027..220779) Helicobacter pylori SJM180 9786956 YP_003928146.1 CDS HPSJM_01160 NC_014560.1 221024 221236 R hypothetical protein complement(221024..221236) Helicobacter pylori SJM180 9786957 YP_003928147.1 CDS HPSJM_01165 NC_014560.1 221237 222388 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase complement(221237..222388) Helicobacter pylori SJM180 9786958 YP_003928148.1 CDS HPSJM_01170 NC_014560.1 222399 224264 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(222399..224264) Helicobacter pylori SJM180 9786959 YP_003928149.1 CDS HPSJM_01175 NC_014560.1 224360 226018 D COG0471 Di- and tricarboxylate transporters; sodium-dependent transporter (huNaDC-1) 224360..226018 Helicobacter pylori SJM180 9786960 YP_003928150.1 CDS HPSJM_01180 NC_014560.1 226031 226831 D COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 226031..226831 Helicobacter pylori SJM180 9786961 YP_003928151.1 CDS HPSJM_01185 NC_014560.1 226832 227938 D COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 226832..227938 Helicobacter pylori SJM180 9786962 YP_003928152.1 CDS HPSJM_01190 NC_014560.1 227990 228283 D hypothetical protein 227990..228283 Helicobacter pylori SJM180 9786963 YP_003928153.1 CDS HPSJM_01195 NC_014560.1 228436 229119 D hypothetical protein 228436..229119 Helicobacter pylori SJM180 9786964 YP_003928154.1 CDS HPSJM_01200 NC_014560.1 229189 229740 R COG1881 Phospholipid-binding protein; hypothetical protein complement(229189..229740) Helicobacter pylori SJM180 9786965 YP_003928155.1 CDS HPSJM_01205 NC_014560.1 229885 230346 D hypothetical protein 229885..230346 Helicobacter pylori SJM180 9786966 YP_003928156.1 CDS HPSJM_01210 NC_014560.1 230521 231684 D COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 230521..231684 Helicobacter pylori SJM180 9786967 YP_003928157.1 CDS HPSJM_01215 NC_014560.1 231706 232686 D COG0822 NifU homolog involved in Fe-S cluster formation; nifU-like protein 231706..232686 Helicobacter pylori SJM180 9786968 YP_003928158.1 CDS HPSJM_01220 NC_014560.1 232845 233078 D hypothetical protein 232845..233078 Helicobacter pylori SJM180 9786969 YP_003928159.1 CDS HPSJM_01225 NC_014560.1 233191 234537 D COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 233191..234537 Helicobacter pylori SJM180 9786970 YP_003928160.1 CDS HPSJM_01230 NC_014560.1 234661 235740 D COG0225 Peptide methionine sulfoxide reductase; bifunctional methioninesulfoxide reductaseA/B protein 234661..235740 Helicobacter pylori SJM180 9786971 YP_003928161.1 CDS HPSJM_01235 NC_014560.1 235895 236011 R hypothetical protein complement(235895..236011) Helicobacter pylori SJM180 9786972 YP_003928162.1 CDS HPSJM_01240 NC_014560.1 236128 236961 R COG0730 Predicted permeases; hypothetical protein complement(236128..236961) Helicobacter pylori SJM180 9786973 YP_003928163.1 CDS HPSJM_01245 NC_014560.1 236960 237073 D hypothetical protein 236960..237073 Helicobacter pylori SJM180 9786974 YP_003928164.1 CDS HPSJM_01250 NC_014560.1 237080 237181 R hypothetical protein complement(237080..237181) Helicobacter pylori SJM180 9786975 YP_003928165.1 CDS HPSJM_01255 NC_014560.1 237165 239252 R putative Outer membrane protein complement(237165..239252) Helicobacter pylori SJM180 9786976 YP_003928166.1 CDS HPSJM_01260 NC_014560.1 239496 240653 D COG0659 Sulfate permease and related transporters (MFS superfamily); hypothetical protein 239496..240653 Helicobacter pylori SJM180 9786977 YP_003928167.1 CDS HPSJM_01270 NC_014560.1 240896 242344 R outer membrane protein (omp6) complement(240896..242344) Helicobacter pylori SJM180 9786979 YP_003928168.1 CDS HPSJM_01275 NC_014560.1 242540 243271 R COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase complement(242540..243271) Helicobacter pylori SJM180 9786980 YP_003928169.1 CDS HPSJM_01280 NC_014560.1 243383 244180 D COG1651 Protein-disulfide isomerase; hypothetical protein 243383..244180 Helicobacter pylori SJM180 9786981 YP_003928170.1 CDS HPSJM_01285 NC_014560.1 244195 244845 D hypothetical protein 244195..244845 Helicobacter pylori SJM180 9786982 YP_003928171.1 CDS HPSJM_01290 NC_014560.1 244869 246041 D COG0754 Glutathionylspermidine synthase; glutathione spermidine synthetase 244869..246041 Helicobacter pylori SJM180 9786983 YP_003928172.1 CDS HPSJM_01295 NC_014560.1 246041 246571 D integral membrane protein 246041..246571 Helicobacter pylori SJM180 9786984 YP_003928173.1 CDS HPSJM_01300 NC_014560.1 247292 248359 R COG0790 FOG: TPR repeat, SEL1 subfamily; Cysteine-rich protein E; putative beta-lactamase HcpE precursor complement(247292..248359) Helicobacter pylori SJM180 9786985 YP_003928174.1 CDS HPSJM_01305 NC_014560.1 248469 248840 R hypothetical protein complement(248469..248840) Helicobacter pylori SJM180 9786986 YP_003928175.1 CDS hemC NC_014560.1 248840 249760 R COG0181 Porphobilinogen deaminase; porphobilinogen deaminase complement(248840..249760) Helicobacter pylori SJM180 9786987 YP_003928176.1 CDS HPSJM_01315 NC_014560.1 249771 251504 R COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(249771..251504) Helicobacter pylori SJM180 9786988 YP_003928177.1 CDS hemA NC_014560.1 251508 252857 R COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(251508..252857) Helicobacter pylori SJM180 9786989 YP_003928178.1 CDS HPSJM_01325 NC_014560.1 252857 253780 R COG0142 Geranylgeranyl pyrophosphate synthase; putative octaprenyl-diphosphate synthase complement(252857..253780) Helicobacter pylori SJM180 9786990 YP_003928179.1 CDS HPSJM_01330 NC_014560.1 253790 254185 R hypothetical protein complement(253790..254185) Helicobacter pylori SJM180 9786991 YP_003928180.1 CDS HPSJM_01335 NC_014560.1 254178 254462 R hypothetical protein complement(254178..254462) Helicobacter pylori SJM180 9786992 YP_003928181.1 CDS HPSJM_01340 NC_014560.1 254483 254917 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); Neutrophil activating protein NapA (bacterioferritin) complement(254483..254917) Helicobacter pylori SJM180 9786993 YP_003928182.1 CDS HPSJM_01345 NC_014560.1 255125 256270 R COG0642 Signal transduction histidine kinase; histidine kinase sensor protein complement(255125..256270) Helicobacter pylori SJM180 9786994 YP_003928183.1 CDS HPSJM_01350 NC_014560.1 256267 256584 R hypothetical protein complement(256267..256584) Helicobacter pylori SJM180 9786995 YP_003928184.1 CDS flgI NC_014560.1 256581 257609 R COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein complement(256581..257609) Helicobacter pylori SJM180 9786996 YP_003928185.1 CDS HPSJM_01360 NC_014560.1 257798 259276 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 257798..259276 Helicobacter pylori SJM180 9786997 YP_003928186.1 CDS HPSJM_01365 NC_014560.1 259297 260385 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 259297..260385 Helicobacter pylori SJM180 9786998 YP_003928187.1 CDS HPSJM_01370 NC_014560.1 260392 260931 D hypothetical protein 260392..260931 Helicobacter pylori SJM180 9786999 YP_003928188.1 CDS HPSJM_01375 NC_014560.1 261015 262565 R COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; oligopeptide permease ATPase protein complement(261015..262565) Helicobacter pylori SJM180 9787000 YP_003928189.1 CDS HPSJM_01380 NC_014560.1 262575 263597 R COG4239 ABC-type uncharacterized transport system, permease component; oligopeptide permease integral membrane protein complement(262575..263597) Helicobacter pylori SJM180 9787001 YP_003928190.1 CDS HPSJM_01385 NC_014560.1 263864 263956 D hypothetical protein 263864..263956 Helicobacter pylori SJM180 9787003 YP_003928191.1 CDS HPSJM_01390 NC_014560.1 263937 265394 D Outer membrane protein HopF; putative signal peptide 263937..265394 Helicobacter pylori SJM180 9787004 YP_003928192.1 CDS HPSJM_01395 NC_014560.1 265407 266831 D Outer membrane protein HopG; putative signal peptide 265407..266831 Helicobacter pylori SJM180 9787005 YP_003928193.1 CDS HPSJM_01400 NC_014560.1 266930 268165 D COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 266930..268165 Helicobacter pylori SJM180 9787006 YP_003928194.1 CDS HPSJM_01405 NC_014560.1 268162 268590 D hypothetical protein 268162..268590 Helicobacter pylori SJM180 9787007 YP_003928195.1 CDS HPSJM_01410 NC_014560.1 268583 269242 D COG3334 Uncharacterized conserved protein; conserved hypothetical secreted protein 268583..269242 Helicobacter pylori SJM180 9787008 YP_003928196.1 CDS HPSJM_01415 NC_014560.1 269239 270288 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; hypothetical protein 269239..270288 Helicobacter pylori SJM180 9787009 YP_003928197.1 CDS xseA NC_014560.1 270311 271573 D COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 270311..271573 Helicobacter pylori SJM180 9787010 YP_003928198.1 CDS HPSJM_01425 NC_014560.1 271823 272392 D Endonuclease MjaVIP 271823..272392 Helicobacter pylori SJM180 9787011 YP_003928199.1 CDS HPSJM_01430 NC_014560.1 272389 273147 D COG0863 DNA modification methylase; adenine specific DNA methyltransferase (hpaim) 272389..273147 Helicobacter pylori SJM180 9787012 YP_003928200.1 CDS HPSJM_01435 NC_014560.1 273220 275790 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent protease binding subunit (clpB) 273220..275790 Helicobacter pylori SJM180 9787013 YP_003928201.1 CDS HPSJM_01440 NC_014560.1 275846 276565 D COG0785 Cytochrome c biogenesis protein; cytochrome c biogenesis protein 275846..276565 Helicobacter pylori SJM180 9787014 YP_003928202.1 CDS HPSJM_01445 NC_014560.1 276575 277711 D COG0044 Dihydroorotase and related cyclic amidohydrolases; dihydroorotase 276575..277711 Helicobacter pylori SJM180 9787015 YP_003928203.1 CDS HPSJM_01450 NC_014560.1 277696 278925 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase 277696..278925 Helicobacter pylori SJM180 9787016 YP_003928204.1 CDS HPSJM_01455 NC_014560.1 278986 279228 D hypothetical protein 278986..279228 Helicobacter pylori SJM180 9787017 YP_003928205.1 CDS HPSJM_01460 NC_014560.1 279238 280551 D COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 279238..280551 Helicobacter pylori SJM180 9787018 YP_003928206.1 CDS HPSJM_01465 NC_014560.1 280585 281238 D COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein 280585..281238 Helicobacter pylori SJM180 9787019 YP_003928207.1 CDS HPSJM_01470 NC_014560.1 281231 282214 D hypothetical protein 281231..282214 Helicobacter pylori SJM180 9787020 YP_003928208.1 CDS HPSJM_01475 NC_014560.1 282204 282737 D hypothetical protein 282204..282737 Helicobacter pylori SJM180 9787021 YP_003928209.1 CDS HPSJM_01480 NC_014560.1 282734 283273 D hypothetical protein 282734..283273 Helicobacter pylori SJM180 9787022 YP_003928210.1 CDS HPSJM_01485 NC_014560.1 283289 283687 D COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 283289..283687 Helicobacter pylori SJM180 9787023 YP_003928211.1 CDS HPSJM_01490 NC_014560.1 283724 285019 D COG0457 FOG: TPR repeat; ATP-dependent nuclease 283724..285019 Helicobacter pylori SJM180 9787024 YP_003928212.1 CDS HPSJM_01495 NC_014560.1 285007 285582 D hypothetical protein 285007..285582 Helicobacter pylori SJM180 9787025 YP_003928213.1 CDS HPSJM_01500 NC_014560.1 285622 285873 D COG1145 Ferredoxin; ferrodoxin 285622..285873 Helicobacter pylori SJM180 9787026 YP_003928214.1 CDS HPSJM_01505 NC_014560.1 285883 287337 D COG0248 Exopolyphosphatase; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase 285883..287337 Helicobacter pylori SJM180 9787027 YP_003928215.1 CDS HPSJM_01510 NC_014560.1 287334 288356 D COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase-1 287334..288356 Helicobacter pylori SJM180 9787028 YP_003928216.1 CDS HPSJM_01515 NC_014560.1 288353 289339 D COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 288353..289339 Helicobacter pylori SJM180 9787029 YP_003928217.1 CDS tgt NC_014560.1 289594 290709 R COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(289594..290709) Helicobacter pylori SJM180 9787030 YP_003928218.1 CDS HPSJM_01525 NC_014560.1 290766 292202 D COG3400 Uncharacterized protein conserved in bacteria; hypothetical protein 290766..292202 Helicobacter pylori SJM180 9787031 YP_003928219.1 CDS aroB NC_014560.1 292207 293238 D COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 292207..293238 Helicobacter pylori SJM180 9787032 YP_003928220.1 CDS HPSJM_01535 NC_014560.1 293229 294800 D COG0668 Small-conductance mechanosensitive channel; hypothetical protein 293229..294800 Helicobacter pylori SJM180 9787033 YP_003928221.1 CDS HPSJM_01540 NC_014560.1 294797 296053 D COG0621 2-methylthioadenine synthetase; hypothetical protein 294797..296053 Helicobacter pylori SJM180 9787034 YP_003928222.1 CDS HPSJM_01545 NC_014560.1 296040 297692 D COG0465 ATP-dependent Zn proteases; cell division protein (ftsH) 296040..297692 Helicobacter pylori SJM180 9787035 YP_003928223.1 CDS HPSJM_01550 NC_014560.1 297695 298213 D hypothetical protein 297695..298213 Helicobacter pylori SJM180 9787036 YP_003928224.1 CDS HPSJM_01555 NC_014560.1 298226 298699 D hypothetical protein 298226..298699 Helicobacter pylori SJM180 9787037 YP_003928225.1 CDS HPSJM_01560 NC_014560.1 298767 307454 D toxin-like outer membrane protein 298767..307454 Helicobacter pylori SJM180 9787038 YP_003928226.1 CDS HPSJM_01565 NC_014560.1 307502 308719 D COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 307502..308719 Helicobacter pylori SJM180 9787039 YP_003928227.1 CDS HPSJM_01570 NC_014560.1 308724 309014 D COG1605 Chorismate mutase; hypothetical protein 308724..309014 Helicobacter pylori SJM180 9787040 YP_003928228.1 CDS HPSJM_01575 NC_014560.1 309027 309899 D COG4866 Uncharacterized conserved protein; hypothetical protein 309027..309899 Helicobacter pylori SJM180 9787041 YP_003928229.1 CDS HPSJM_01580 NC_014560.1 309900 311579 D COG0147 Anthranilate/para-aminobenzoate synthases component I; para-amino benzoate synthetase 309900..311579 Helicobacter pylori SJM180 9787042 YP_003928230.1 CDS amiE NC_014560.1 311773 312792 D COG0388 Predicted amidohydrolase; acylamide amidohydrolase 311773..312792 Helicobacter pylori SJM180 9787043 YP_003928231.1 CDS flgL NC_014560.1 312889 315375 R COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL complement(312889..315375) Helicobacter pylori SJM180 9787044 YP_003928232.1 CDS HPSJM_01595 NC_014560.1 315425 315526 D hypothetical protein 315425..315526 Helicobacter pylori SJM180 9787045 YP_003928233.1 CDS rplU NC_014560.1 315618 315932 D COG0261 Ribosomal protein L21; 50S ribosomal protein L21 315618..315932 Helicobacter pylori SJM180 9787046 YP_003928234.1 CDS rpmA NC_014560.1 315947 316213 D COG0211 Ribosomal protein L27; 50S ribosomal protein L27 315947..316213 Helicobacter pylori SJM180 9787047 YP_003928235.1 CDS HPSJM_01610 NC_014560.1 316330 317979 D COG0747 ABC-type dipeptide transport system, periplasmic component; periplasmic dipeptide-binding protein 316330..317979 Helicobacter pylori SJM180 9787048 YP_003928236.1 CDS HPSJM_01615 NC_014560.1 317990 318994 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transport system permease protein 317990..318994 Helicobacter pylori SJM180 9787049 YP_003928237.1 CDS HPSJM_01620 NC_014560.1 318994 319851 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide permease protein 318994..319851 Helicobacter pylori SJM180 9787050 YP_003928238.1 CDS HPSJM_01625 NC_014560.1 319863 320726 D COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 319863..320726 Helicobacter pylori SJM180 9787051 YP_003928239.1 CDS HPSJM_01630 NC_014560.1 320723 321529 D COG4608 ABC-type oligopeptide transport system, ATPase component; ABC-type transport system, ATP binding protein; putative dipeptide transporter protein 5 320723..321529 Helicobacter pylori SJM180 9787052 YP_003928240.1 CDS obgE NC_014560.1 321549 322631 D COG0536 Predicted GTPase; GTPase ObgE 321549..322631 Helicobacter pylori SJM180 9787053 YP_003928241.1 CDS HPSJM_01640 NC_014560.1 322668 323669 D hypothetical protein 322668..323669 Helicobacter pylori SJM180 9787054 YP_003928242.1 CDS HPSJM_01645 NC_014560.1 323908 324462 D hypothetical protein 323908..324462 Helicobacter pylori SJM180 9787055 YP_003928243.1 CDS HPSJM_01650 NC_014560.1 324472 325764 D COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 324472..325764 Helicobacter pylori SJM180 9787056 YP_003928244.1 CDS HPSJM_01655 NC_014560.1 325761 326033 D hypothetical protein 325761..326033 Helicobacter pylori SJM180 9787057 YP_003928245.1 CDS HPSJM_01660 NC_014560.1 326049 326450 D hypothetical protein 326049..326450 Helicobacter pylori SJM180 9787058 YP_003928246.1 CDS HPSJM_01665 NC_014560.1 326534 327412 D COG0388 Predicted amidohydrolase; N-carbamoyl-D-amino acid amidohydrolase 326534..327412 Helicobacter pylori SJM180 9787059 YP_003928247.1 CDS HPSJM_01670 NC_014560.1 327425 328306 D COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 327425..328306 Helicobacter pylori SJM180 9787060 YP_003928248.1 CDS HPSJM_01675 NC_014560.1 328353 328739 D hypothetical protein 328353..328739 Helicobacter pylori SJM180 9787061 YP_003928249.1 CDS HPSJM_01680 NC_014560.1 328739 329704 D COG0523 Putative GTPases (G3E family); ATP-binding protein 328739..329704 Helicobacter pylori SJM180 9787062 YP_003928250.1 CDS HPSJM_01685 NC_014560.1 329710 330855 R COG0477 Permeases of the major facilitator superfamily; nitrite extrusion protein complement(329710..330855) Helicobacter pylori SJM180 9787063 YP_003928251.1 CDS HPSJM_01690 NC_014560.1 331649 332011 R hypothetical protein complement(331649..332011) Helicobacter pylori SJM180 9787064 YP_003928252.1 CDS HPSJM_01695 NC_014560.1 332243 332431 R hypothetical protein complement(332243..332431) Helicobacter pylori SJM180 9787065 YP_003928253.1 CDS HPSJM_01700 NC_014560.1 332496 334739 R outer membrane protein BabA complement(332496..334739) Helicobacter pylori SJM180 9787066 YP_003928254.1 CDS HPSJM_01705 NC_014560.1 335023 335778 R COG0748 Putative heme iron utilization protein; putative heme iron utilization protein complement(335023..335778) Helicobacter pylori SJM180 9787067 YP_003928255.1 CDS argS NC_014560.1 335839 337464 R COG0018 Arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(335839..337464) Helicobacter pylori SJM180 9787068 YP_003928256.1 CDS HPSJM_01715 NC_014560.1 337467 337706 R COG1826 Sec-independent protein secretion pathway components; Sec-independent protein translocase protein tatA/E-like protein complement(337467..337706) Helicobacter pylori SJM180 9787069 YP_003928257.1 CDS gmk NC_014560.1 337777 338397 R COG0194 Guanylate kinase; guanylate kinase complement(337777..338397) Helicobacter pylori SJM180 9787070 YP_003928258.1 CDS HPSJM_01725 NC_014560.1 338390 339778 R poly E-rich protein complement(338390..339778) Helicobacter pylori SJM180 9787071 YP_003928259.1 CDS HPSJM_01730 NC_014560.1 339926 340468 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; nuclease NucT 339926..340468 Helicobacter pylori SJM180 9787072 YP_003928260.1 CDS HPSJM_01735 NC_014560.1 340475 341227 R outer membrane protein HorC complement(340475..341227) Helicobacter pylori SJM180 9787073 YP_003928261.1 CDS flgH NC_014560.1 341353 342066 D COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 341353..342066 Helicobacter pylori SJM180 9787074 YP_003928262.1 CDS HPSJM_01745 NC_014560.1 342084 342767 D COG1083 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 342084..342767 Helicobacter pylori SJM180 9787075 YP_003928263.1 CDS HPSJM_01750 NC_014560.1 342758 343630 D COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase; CMP-N-acetylneuraminic acid synthetase (neuA) 342758..343630 Helicobacter pylori SJM180 9787076 YP_003928264.1 CDS HPSJM_01755 NC_014560.1 343627 344169 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; flagellar biosynthesis protein G 343627..344169 Helicobacter pylori SJM180 9787077 YP_003928265.1 CDS lpxK NC_014560.1 344102 345040 R COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(344102..345040) Helicobacter pylori SJM180 9787078 YP_003928266.1 CDS HPSJM_01765 NC_014560.1 345037 345819 R COG0171 NAD synthase; NAD synthetase complement(345037..345819) Helicobacter pylori SJM180 9787079 YP_003928267.1 CDS HPSJM_01770 NC_014560.1 346068 347060 D COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 346068..347060 Helicobacter pylori SJM180 9787081 YP_003928268.1 CDS HPSJM_01775 NC_014560.1 347084 347890 D COG2894 Septum formation inhibitor-activating ATPase; MinD cell division inhibitor protein 347084..347890 Helicobacter pylori SJM180 9787082 YP_003928269.1 CDS minE NC_014560.1 347887 348120 D COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 347887..348120 Helicobacter pylori SJM180 9787083 YP_003928270.1 CDS HPSJM_01785 NC_014560.1 348132 348932 D COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; hypothetical protein 348132..348932 Helicobacter pylori SJM180 9787084 YP_003928271.1 CDS HPSJM_01790 NC_014560.1 348929 349333 D COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 348929..349333 Helicobacter pylori SJM180 9787085 YP_003928272.1 CDS HPSJM_01795 NC_014560.1 349618 349824 D Cysteine-rich protein H 349618..349824 Helicobacter pylori SJM180 9787086 YP_003928273.1 CDS HPSJM_01800 NC_014560.1 349854 350162 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 349854..350162 Helicobacter pylori SJM180 9787087 YP_003928274.1 CDS HPSJM_01805 NC_014560.1 350224 350361 D hypothetical protein 350224..350361 Helicobacter pylori SJM180 9787088 YP_003928275.1 CDS HPSJM_01810 NC_014560.1 350488 350826 D hypothetical protein 350488..350826 Helicobacter pylori SJM180 9787089 YP_003928276.1 CDS HPSJM_01815 NC_014560.1 350810 351370 D hypothetical protein 350810..351370 Helicobacter pylori SJM180 9787090 YP_003928277.1 CDS HPSJM_01820 NC_014560.1 351658 352539 R COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein complement(351658..352539) Helicobacter pylori SJM180 9787091 YP_003928278.1 CDS HPSJM_01825 NC_014560.1 352539 354089 R COG0608 Single-stranded DNA-specific exonuclease; single-stranded-DNA specific exonuclease complement(352539..354089) Helicobacter pylori SJM180 9787092 YP_003928279.1 CDS pyrG NC_014560.1 354098 355714 R COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase complement(354098..355714) Helicobacter pylori SJM180 9787093 YP_003928280.1 CDS HPSJM_01835 NC_014560.1 355972 356634 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 355972..356634 Helicobacter pylori SJM180 9787094 YP_003928281.1 CDS fliF NC_014560.1 356678 358381 D COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 356678..358381 Helicobacter pylori SJM180 9787095 YP_003928282.1 CDS fliG NC_014560.1 358394 359425 D COG1536 Flagellar motor switch protein; flagellar motor switch protein G 358394..359425 Helicobacter pylori SJM180 9787096 YP_003928283.1 CDS fliH NC_014560.1 359418 360191 D COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 359418..360191 Helicobacter pylori SJM180 9787097 YP_003928284.1 CDS HPSJM_01855 NC_014560.1 360194 362044 D COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 360194..362044 Helicobacter pylori SJM180 9787098 YP_003928285.1 CDS HPSJM_01860 NC_014560.1 362041 363855 D COG0481 Membrane GTPase LepA; GTP-binding protein LepA 362041..363855 Helicobacter pylori SJM180 9787099 YP_003928286.1 CDS HPSJM_01865 NC_014560.1 363870 364625 D COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; hypothetical protein 363870..364625 Helicobacter pylori SJM180 9787100 YP_003928287.1 CDS HPSJM_01870 NC_014560.1 364628 364864 D hypothetical protein 364628..364864 Helicobacter pylori SJM180 9787101 YP_003928288.1 CDS HPSJM_01875 NC_014560.1 365061 365279 D hypothetical protein 365061..365279 Helicobacter pylori SJM180 9787102 YP_003928289.1 CDS HPSJM_01880 NC_014560.1 365497 366306 R COG4786 Flagellar basal body rod protein; flagellar basal-body rod protein complement(365497..366306) Helicobacter pylori SJM180 9787103 YP_003928290.1 CDS HPSJM_01885 NC_014560.1 366361 367647 R COG0477 Permeases of the major facilitator superfamily; General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein complement(366361..367647) Helicobacter pylori SJM180 9787104 YP_003928291.1 CDS HPSJM_01890 NC_014560.1 367750 367902 D hypothetical protein 367750..367902 Helicobacter pylori SJM180 9787105 YP_003928292.1 CDS HPSJM_01895 NC_014560.1 367912 370461 R COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein complement(367912..370461) Helicobacter pylori SJM180 9787106 YP_003928293.1 CDS HPSJM_01900 NC_014560.1 370458 372794 R COG3893 Inactivated superfamily I helicase; hypothetical protein complement(370458..372794) Helicobacter pylori SJM180 9787107 YP_003928294.1 CDS HPSJM_01905 NC_014560.1 372791 374716 R COG0021 Transketolase; transketolase complement(372791..374716) Helicobacter pylori SJM180 9787108 YP_003928295.1 CDS HPSJM_01910 NC_014560.1 374763 375605 R COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase complement(374763..375605) Helicobacter pylori SJM180 9787109 YP_003928296.1 CDS HPSJM_01915 NC_014560.1 375571 376278 R COG1189 Predicted rRNA methylase; Pore-forming cytolysin complement(375571..376278) Helicobacter pylori SJM180 9787110 YP_003928297.1 CDS HPSJM_01920 NC_014560.1 376278 376793 R hypothetical protein complement(376278..376793) Helicobacter pylori SJM180 9787111 YP_003928298.1 CDS pyrB NC_014560.1 376860 377783 D COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 376860..377783 Helicobacter pylori SJM180 9787112 YP_003928299.1 CDS HPSJM_01930 NC_014560.1 378080 379519 D outer membrane protein HofB 378080..379519 Helicobacter pylori SJM180 9787113 YP_003928300.1 CDS HPSJM_01935 NC_014560.1 379610 381265 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (msbA) 379610..381265 Helicobacter pylori SJM180 9787114 YP_003928301.1 CDS HPSJM_01940 NC_014560.1 381259 381882 D hypothetical protein 381259..381882 Helicobacter pylori SJM180 9787115 YP_003928302.1 CDS HPSJM_01945 NC_014560.1 381886 382455 D COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; archaeal Holliday junction resolvase / Mrr protein-like protein 381886..382455 Helicobacter pylori SJM180 9787116 YP_003928303.1 CDS HPSJM_01950 NC_014560.1 382588 383700 D COG1106 Predicted ATPases; hypothetical protein 382588..383700 Helicobacter pylori SJM180 9787117 YP_003928304.1 CDS HPSJM_01955 NC_014560.1 383729 384412 D hypothetical protein 383729..384412 Helicobacter pylori SJM180 9787118 YP_003928305.1 CDS HPSJM_01960 NC_014560.1 384468 385463 D COG3376 High-affinity nickel permease; high affinity nickel transport protein 384468..385463 Helicobacter pylori SJM180 9787119 YP_003928306.1 CDS HPSJM_01965 NC_014560.1 385467 385982 R hypothetical protein complement(385467..385982) Helicobacter pylori SJM180 9787120 YP_003928307.1 CDS HPSJM_01970 NC_014560.1 386115 387431 D hypothetical protein 386115..387431 Helicobacter pylori SJM180 9787121 YP_003928308.1 CDS HPSJM_01975 NC_014560.1 387648 387881 D hypothetical protein 387648..387881 Helicobacter pylori SJM180 9787122 YP_003928309.1 CDS HPSJM_01980 NC_014560.1 388081 388281 R COG2608 Copper chaperone; copper ion binding protein complement(388081..388281) Helicobacter pylori SJM180 9787123 YP_003928310.1 CDS HPSJM_01985 NC_014560.1 388282 390519 R COG2217 Cation transport ATPase; copper-transporting ATPase complement(388282..390519) Helicobacter pylori SJM180 9787124 YP_003928311.1 CDS HPSJM_01990 NC_014560.1 390516 391229 R COG1183 Phosphatidylserine synthase; phosphatidylserine synthase complement(390516..391229) Helicobacter pylori SJM180 9787125 YP_003928312.1 CDS HPSJM_01995 NC_014560.1 391219 391473 R hypothetical protein complement(391219..391473) Helicobacter pylori SJM180 9787126 YP_003928313.1 CDS HPSJM_02000 NC_014560.1 391476 393374 R COG0465 ATP-dependent Zn proteases; cell division protein (ftsH) complement(391476..393374) Helicobacter pylori SJM180 9787127 YP_003928314.1 CDS prmA NC_014560.1 393383 394372 R COG2264 Ribosomal protein L11 methylase; ribosomal protein L11 methyltransferase complement(393383..394372) Helicobacter pylori SJM180 9787128 YP_003928315.1 CDS HPSJM_02010 NC_014560.1 394373 394747 R COG0784 FOG: CheY-like receiver; Chemotactic response regulator, two-component system complement(394373..394747) Helicobacter pylori SJM180 9787129 YP_003928316.1 CDS HPSJM_02015 NC_014560.1 395037 395639 D Outer membrane protein HorD 395037..395639 Helicobacter pylori SJM180 9787130 YP_003928317.1 CDS HPSJM_02020 NC_014560.1 395772 396179 R hypothetical protein complement(395772..396179) Helicobacter pylori SJM180 9787132 YP_003928318.1 CDS HPSJM_02025 NC_014560.1 396182 396424 R hypothetical protein complement(396182..396424) Helicobacter pylori SJM180 9787133 YP_003928319.1 CDS gidB NC_014560.1 396418 396954 R COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB complement(396418..396954) Helicobacter pylori SJM180 9787134 YP_003928320.1 CDS queA NC_014560.1 396951 397988 R COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(396951..397988) Helicobacter pylori SJM180 9787135 YP_003928321.1 CDS HPSJM_02040 NC_014560.1 397989 398711 R COG0805 Sec-independent protein secretion pathway component TatC; twin arginine-targeting protein translocase TatC complement(397989..398711) Helicobacter pylori SJM180 9787136 YP_003928322.1 CDS HPSJM_02045 NC_014560.1 398704 399186 R COG1826 Sec-independent protein secretion pathway components; sec-independent translocase complement(398704..399186) Helicobacter pylori SJM180 9787137 YP_003928323.1 CDS ruvB NC_014560.1 399253 400263 R COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB complement(399253..400263) Helicobacter pylori SJM180 9787138 YP_003928324.1 CDS panB NC_014560.1 400264 401076 R COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(400264..401076) Helicobacter pylori SJM180 9787139 YP_003928325.1 CDS HPSJM_02060 NC_014560.1 401224 401946 D hypothetical protein 401224..401946 Helicobacter pylori SJM180 9787140 YP_003928326.1 CDS HPSJM_02065 NC_014560.1 401936 402793 D hypothetical protein 401936..402793 Helicobacter pylori SJM180 9787141 YP_003928327.1 CDS HPSJM_02070 NC_014560.1 402805 403746 D hypothetical protein 402805..403746 Helicobacter pylori SJM180 9787142 YP_003928328.1 CDS HPSJM_02075 NC_014560.1 403756 405078 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 403756..405078 Helicobacter pylori SJM180 9787143 YP_003928329.1 CDS minC NC_014560.1 405081 405668 D COG0850 Septum formation inhibitor; septum formation inhibitor 405081..405668 Helicobacter pylori SJM180 9787144 YP_003928330.1 CDS lpxC NC_014560.1 405665 406552 D COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 405665..406552 Helicobacter pylori SJM180 9787145 YP_003928331.1 CDS HPSJM_02090 NC_014560.1 406574 407047 D COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 406574..407047 Helicobacter pylori SJM180 9787146 YP_003928332.1 CDS HPSJM_02095 NC_014560.1 407101 407982 D COG0083 Homoserine kinase; homoserine kinase 407101..407982 Helicobacter pylori SJM180 9787147 YP_003928333.1 CDS HPSJM_02100 NC_014560.1 407969 408223 D COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 407969..408223 Helicobacter pylori SJM180 9787148 YP_003928334.1 CDS infB NC_014560.1 408220 411063 D COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 408220..411063 Helicobacter pylori SJM180 9787149 YP_003928335.1 CDS rbfA NC_014560.1 411063 411398 D COG0858 Ribosome-binding factor A; ribosome-binding factor A 411063..411398 Helicobacter pylori SJM180 9787150 YP_003928336.1 CDS HPSJM_02115 NC_014560.1 411391 411831 D COG0779 Uncharacterized protein conserved in bacteria; Ribosome maturation factor rimP 411391..411831 Helicobacter pylori SJM180 9787151 YP_003928337.1 CDS HPSJM_02120 NC_014560.1 411939 413927 R COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; acetyl-CoA synthetase complement(411939..413927) Helicobacter pylori SJM180 9787152 YP_003928338.1 CDS HPSJM_02125 NC_014560.1 414124 415236 D COG1408 Predicted phosphohydrolases; phosphodiesterase domain-containing protein 414124..415236 Helicobacter pylori SJM180 9787153 YP_003928339.1 CDS HPSJM_02130 NC_014560.1 415584 416255 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; transcriptional regulator 415584..416255 Helicobacter pylori SJM180 9787154 YP_003928340.1 CDS HPSJM_02135 NC_014560.1 416435 416698 R hypothetical protein complement(416435..416698) Helicobacter pylori SJM180 9787155 YP_003928341.1 CDS HPSJM_02140 NC_014560.1 416692 416847 R hypothetical protein complement(416692..416847) Helicobacter pylori SJM180 9787156 YP_003928342.1 CDS HPSJM_02145 NC_014560.1 417030 418073 R COG2404 Predicted phosphohydrolase (DHH superfamily); hypothetical protein complement(417030..418073) Helicobacter pylori SJM180 9787157 YP_003928343.1 CDS flhA NC_014560.1 418103 420304 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(418103..420304) Helicobacter pylori SJM180 9787158 YP_003928344.1 CDS rpsO NC_014560.1 420440 420712 D COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 420440..420712 Helicobacter pylori SJM180 9787159 YP_003928345.1 CDS HPSJM_02160 NC_014560.1 420742 422031 D COG3307 Lipid A core - O-antigen ligase and related enzymes; hypothetical protein 420742..422031 Helicobacter pylori SJM180 9787160 YP_003928346.1 CDS HPSJM_02165 NC_014560.1 422162 422674 D COG0757 3-dehydroquinate dehydratase II; 3-dehydroquinate dehydratase 422162..422674 Helicobacter pylori SJM180 9787161 YP_003928347.1 CDS HPSJM_02170 NC_014560.1 422687 423760 D COG0006 Xaa-Pro aminopeptidase; X-Pro aminopeptidase 422687..423760 Helicobacter pylori SJM180 9787162 YP_003928348.1 CDS HPSJM_02175 NC_014560.1 423757 424248 D COG0801 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 423757..424248 Helicobacter pylori SJM180 9787163 YP_003928349.1 CDS flhF NC_014560.1 424245 425621 D COG1419 Flagellar GTP-binding protein; flagellar biosynthesis regulator FlhF 424245..425621 Helicobacter pylori SJM180 9787164 YP_003928350.1 CDS HPSJM_02185 NC_014560.1 425618 426502 D COG0455 ATPases involved in chromosome partitioning; putative ATPAse involved in the assembly of flagella 425618..426502 Helicobacter pylori SJM180 9787165 YP_003928351.1 CDS HPSJM_02190 NC_014560.1 426515 426679 R hypothetical protein complement(426515..426679) Helicobacter pylori SJM180 9787166 YP_003928352.1 CDS fliA NC_014560.1 426799 427566 D COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 426799..427566 Helicobacter pylori SJM180 9787167 YP_003928353.1 CDS fliM NC_014560.1 427559 428623 D COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 427559..428623 Helicobacter pylori SJM180 9787168 YP_003928354.1 CDS HPSJM_02205 NC_014560.1 428627 429490 D COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; flagellar motor switch protein FliY 428627..429490 Helicobacter pylori SJM180 9787169 YP_003928355.1 CDS HPSJM_02210 NC_014560.1 429519 430055 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 429519..430055 Helicobacter pylori SJM180 9787170 YP_003928356.1 CDS HPSJM_02215 NC_014560.1 430052 430549 D COG4731 Uncharacterized protein conserved in bacteria; hypothetical protein 430052..430549 Helicobacter pylori SJM180 9787171 YP_003928357.1 CDS HPSJM_02220 NC_014560.1 430572 431024 R COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein complement(430572..431024) Helicobacter pylori SJM180 9787172 YP_003928358.1 CDS HPSJM_02225 NC_014560.1 431184 432359 R COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA complement(431184..432359) Helicobacter pylori SJM180 9787173 YP_003928359.1 CDS HPSJM_02230 NC_014560.1 432356 432727 R COG0789 Predicted transcriptional regulators; putative transcriptional regulator, MerR family protein complement(432356..432727) Helicobacter pylori SJM180 9787174 YP_003928360.1 CDS HPSJM_02235 NC_014560.1 432737 433603 R COG2214 DnaJ-class molecular chaperone; putative co-chaperone with DnaK complement(432737..433603) Helicobacter pylori SJM180 9787175 YP_003928361.1 CDS HPSJM_02240 NC_014560.1 433771 435021 D hypothetical protein 433771..435021 Helicobacter pylori SJM180 9787176 YP_003928362.1 CDS HPSJM_02245 NC_014560.1 435146 435964 R COG0258 5'-3' exonuclease (including N-terminal domain of PolI); hypothetical protein complement(435146..435964) Helicobacter pylori SJM180 9787177 YP_003928363.1 CDS HPSJM_02250 NC_014560.1 436216 437112 R COG0784 FOG: CheY-like receiver; two component response regulator complement(436216..437112) Helicobacter pylori SJM180 9787178 YP_003928364.1 CDS ispDF NC_014560.1 437134 438354 R COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase protein complement(437134..438354) Helicobacter pylori SJM180 9787179 YP_003928365.1 CDS HPSJM_02260 NC_014560.1 438376 439806 R COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; protease DO complement(438376..439806) Helicobacter pylori SJM180 9787180 YP_003928366.1 CDS HPSJM_02265 NC_014560.1 439851 441293 R COG0833 Amino acid transporters; amino acid permease complement(439851..441293) Helicobacter pylori SJM180 9787181 YP_003928367.1 CDS HPSJM_02270 NC_014560.1 441548 442087 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthase complement(441548..442087) Helicobacter pylori SJM180 9787182 YP_003928368.1 CDS HPSJM_02275 NC_014560.1 442084 442692 R hypothetical protein complement(442084..442692) Helicobacter pylori SJM180 9787183 YP_003928369.1 CDS HPSJM_02280 NC_014560.1 442702 443490 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase complement(442702..443490) Helicobacter pylori SJM180 9787184 YP_003928370.1 CDS HPSJM_02285 NC_014560.1 443487 444389 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(443487..444389) Helicobacter pylori SJM180 9787185 YP_003928371.1 CDS HPSJM_02290 NC_014560.1 444404 445738 R COG0612 Predicted Zn-dependent peptidases; putative zinc protease complement(444404..445738) Helicobacter pylori SJM180 9787186 YP_003928372.1 CDS HPSJM_02295 NC_014560.1 445735 446790 R COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 complement(445735..446790) Helicobacter pylori SJM180 9787187 YP_003928373.1 CDS HPSJM_02300 NC_014560.1 446828 448855 R COG0855 Polyphosphate kinase; polyphosphate kinase complement(446828..448855) Helicobacter pylori SJM180 9787188 YP_003928374.1 CDS HPSJM_02305 NC_014560.1 449007 449117 R hypothetical protein complement(449007..449117) Helicobacter pylori SJM180 9787190 YP_003928375.1 CDS HPSJM_02310 NC_014560.1 449523 450764 R COG0732 Restriction endonuclease S subunits; Type I restriction/modification specificity protein complement(449523..450764) Helicobacter pylori SJM180 9787191 YP_003928376.1 CDS HPSJM_02315 NC_014560.1 450757 452388 R COG0286 Type I restriction-modification system methyltransferase subunit; type I restriction enzyme M protein complement(450757..452388) Helicobacter pylori SJM180 9787192 YP_003928377.1 CDS HPSJM_02320 NC_014560.1 452381 454663 R COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein complement(452381..454663) Helicobacter pylori SJM180 9787193 YP_003928378.1 CDS HPSJM_02325 NC_014560.1 454890 455510 R COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) complement(454890..455510) Helicobacter pylori SJM180 9787194 YP_003928379.1 CDS HPSJM_02330 NC_014560.1 455558 457453 R COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein complement(455558..457453) Helicobacter pylori SJM180 9787195 YP_003928380.1 CDS HPSJM_02335 NC_014560.1 457478 458245 R hypothetical protein complement(457478..458245) Helicobacter pylori SJM180 9787196 YP_003928381.1 CDS HPSJM_02340 NC_014560.1 458255 458605 R hypothetical protein complement(458255..458605) Helicobacter pylori SJM180 9787197 YP_003928382.1 CDS HPSJM_02345 NC_014560.1 458571 460058 R COG2048 Heterodisulfide reductase, subunit B; hypothetical protein complement(458571..460058) Helicobacter pylori SJM180 9787198 YP_003928383.1 CDS HPSJM_02350 NC_014560.1 460070 460558 R hypothetical protein complement(460070..460558) Helicobacter pylori SJM180 9787199 YP_003928384.1 CDS HPSJM_02355 NC_014560.1 460543 462279 R COG1164 Oligoendopeptidase F; oligoendopeptidase F complement(460543..462279) Helicobacter pylori SJM180 9787200 YP_003928385.1 CDS HPSJM_02360 NC_014560.1 462377 463627 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein complement(462377..463627) Helicobacter pylori SJM180 9787201 YP_003928386.1 CDS HPSJM_02365 NC_014560.1 463955 464515 R outer membrane protein (omp11) complement(463955..464515) Helicobacter pylori SJM180 9787202 YP_003928387.1 CDS HPSJM_02370 NC_014560.1 464738 465478 D COG0725 ABC-type molybdate transport system, periplasmic component; molybdenum ABC transporter ModA 464738..465478 Helicobacter pylori SJM180 9787203 YP_003928388.1 CDS HPSJM_02375 NC_014560.1 465500 466174 D COG4149 ABC-type molybdate transport system, permease component; molybdenum ABC transporter ModB 465500..466174 Helicobacter pylori SJM180 9787204 YP_003928389.1 CDS HPSJM_02380 NC_014560.1 466171 466968 D COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; molybdenum ABC transporter ModD 466171..466968 Helicobacter pylori SJM180 9787205 YP_003928390.1 CDS gltX NC_014560.1 467131 468522 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase complement(467131..468522) Helicobacter pylori SJM180 9787206 YP_003928391.1 CDS HPSJM_02390 NC_014560.1 468640 469749 D outer membrane protein HopK 468640..469749 Helicobacter pylori SJM180 9787207 YP_003928392.1 CDS HPSJM_02395 NC_014560.1 469758 471395 D COG0286 Type I restriction-modification system methyltransferase subunit; type II adenine specific methyltransferase 469758..471395 Helicobacter pylori SJM180 9787208 YP_003928393.1 CDS HPSJM_02400 NC_014560.1 471361 472209 D COG0859 ADP-heptose:LPS heptosyltransferase; putative non-functional type II restriction endonuclease 471361..472209 Helicobacter pylori SJM180 9787209 YP_003928394.1 CDS HPSJM_02405 NC_014560.1 472255 474054 D COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 472255..474054 Helicobacter pylori SJM180 9787210 YP_003928395.1 CDS HPSJM_02410 NC_014560.1 474070 474999 D COG0338 Site-specific DNA methylase; type II adenine specific DNA methyltransferase 474070..474999 Helicobacter pylori SJM180 9787211 YP_003928396.1 CDS HPSJM_02415 NC_014560.1 475002 475616 D type II restriction endonuclease 475002..475616 Helicobacter pylori SJM180 9787212 YP_003928397.1 CDS HPSJM_02420 NC_014560.1 475714 476280 D COG0270 Site-specific DNA methylase; type II DNA modification enzyme 475714..476280 Helicobacter pylori SJM180 9787213 YP_003928398.1 CDS HPSJM_02425 NC_014560.1 476296 477240 R COG0753 Catalase; catalase-like protein complement(476296..477240) Helicobacter pylori SJM180 9787214 YP_003928399.1 CDS HPSJM_02430 NC_014560.1 477530 479116 D outer membrane protein HofC 477530..479116 Helicobacter pylori SJM180 9787215 YP_003928400.1 CDS HPSJM_02435 NC_014560.1 479186 480583 D outer membrane protein HofD 479186..480583 Helicobacter pylori SJM180 9787216 YP_003928401.1 CDS HPSJM_02440 NC_014560.1 480854 483190 D hypothetical protein 480854..483190 Helicobacter pylori SJM180 9787217 YP_003928402.1 CDS HPSJM_02445 NC_014560.1 483233 483472 D hypothetical protein 483233..483472 Helicobacter pylori SJM180 9787218 YP_003928403.1 CDS HPSJM_02450 NC_014560.1 483562 484683 D hypothetical protein 483562..484683 Helicobacter pylori SJM180 9787219 YP_003928404.1 CDS HPSJM_02455 NC_014560.1 484898 486034 R COG1226 Kef-type K+ transport systems, predicted NAD-binding component; putative potassium channel protein complement(484898..486034) Helicobacter pylori SJM180 9787220 YP_003928405.1 CDS rpmB NC_014560.1 486221 486409 R COG0227 Ribosomal protein L28; 50S ribosomal protein L28 complement(486221..486409) Helicobacter pylori SJM180 9787221 YP_003928406.1 CDS HPSJM_02465 NC_014560.1 486509 487360 R hypothetical protein complement(486509..487360) Helicobacter pylori SJM180 9787222 YP_003928407.1 CDS mraY NC_014560.1 487493 488554 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 487493..488554 Helicobacter pylori SJM180 9787223 YP_003928408.1 CDS murD NC_014560.1 488556 489824 D COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 488556..489824 Helicobacter pylori SJM180 9787224 YP_003928409.1 CDS HPSJM_02480 NC_014560.1 489833 490093 R hypothetical protein complement(489833..490093) Helicobacter pylori SJM180 9787225 YP_003928410.1 CDS HPSJM_02485 NC_014560.1 490083 490484 R COG0824 Predicted thioesterase; thioesterase family protein complement(490083..490484) Helicobacter pylori SJM180 9787226 YP_003928411.1 CDS HPSJM_02490 NC_014560.1 490717 492045 D COG0733 Na+-dependent transporters of the SNF family; sodium- and chloride-dependent transporter 490717..492045 Helicobacter pylori SJM180 9787227 YP_003928412.1 CDS HPSJM_02495 NC_014560.1 492056 493384 D COG0733 Na+-dependent transporters of the SNF family; sodium-and chloride-dependent transporter 492056..493384 Helicobacter pylori SJM180 9787228 YP_003928413.1 CDS HPSJM_02500 NC_014560.1 493399 494466 D COG2829 Outer membrane phospholipase A; phospholipase A1 493399..494466 Helicobacter pylori SJM180 9787229 YP_003928414.1 CDS HPSJM_02505 NC_014560.1 494523 495647 D COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 494523..495647 Helicobacter pylori SJM180 9787230 YP_003928415.1 CDS gyrB NC_014560.1 495660 497981 D COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 495660..497981 Helicobacter pylori SJM180 9787231 YP_003928416.1 CDS HPSJM_02515 NC_014560.1 498027 499019 D hypothetical protein 498027..499019 Helicobacter pylori SJM180 9787232 YP_003928417.1 CDS HPSJM_02520 NC_014560.1 499006 499761 D hypothetical protein 499006..499761 Helicobacter pylori SJM180 9787233 YP_003928418.1 CDS HPSJM_02525 NC_014560.1 499971 501191 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 499971..501191 Helicobacter pylori SJM180 9787234 YP_003928419.1 CDS HPSJM_02530 NC_014560.1 501191 501838 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; UDP-sugar diphosphatase 501191..501838 Helicobacter pylori SJM180 9787235 YP_003928420.1 CDS HPSJM_02535 NC_014560.1 501879 503198 D hypothetical protein 501879..503198 Helicobacter pylori SJM180 9787236 YP_003928421.1 CDS HPSJM_02540 NC_014560.1 503203 504582 D COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase, subunit GlcD 503203..504582 Helicobacter pylori SJM180 9787237 YP_003928422.1 CDS HPSJM_02545 NC_014560.1 504605 505369 D COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 504605..505369 Helicobacter pylori SJM180 9787238 YP_003928423.1 CDS HPSJM_02550 NC_014560.1 505656 505775 D hypothetical protein 505656..505775 Helicobacter pylori SJM180 9787239 YP_003928424.1 CDS HPSJM_02555 NC_014560.1 505825 506052 D cag pathogenicity island protein B 505825..506052 Helicobacter pylori SJM180 9787240 YP_003928425.1 CDS HPSJM_02560 NC_014560.1 506195 506542 D cag pathogenicity island protein C 506195..506542 Helicobacter pylori SJM180 9787241 YP_003928426.1 CDS HPSJM_02565 NC_014560.1 506517 507167 D cag pathogenicity island protein D 506517..507167 Helicobacter pylori SJM180 9787242 YP_003928427.1 CDS HPSJM_02570 NC_014560.1 507176 510127 D COG3451 Type IV secretory pathway, VirB4 components; cag pathogenicity island protein E 507176..510127 Helicobacter pylori SJM180 9787243 YP_003928428.1 CDS HPSJM_02575 NC_014560.1 510129 510935 D cag island protein 510129..510935 Helicobacter pylori SJM180 9787244 YP_003928429.1 CDS HPSJM_02580 NC_014560.1 510990 511418 D cag pathogenicity island protein (cag21) 510990..511418 Helicobacter pylori SJM180 9787245 YP_003928430.1 CDS HPSJM_02585 NC_014560.1 511419 511616 R hypothetical protein complement(511419..511616) Helicobacter pylori SJM180 9787246 YP_003928431.1 CDS HPSJM_02590 NC_014560.1 511615 512547 D COG0249 Mismatch repair ATPase (MutS family); cag pathogenicity island protein H 511615..512547 Helicobacter pylori SJM180 9787247 YP_003928432.1 CDS HPSJM_02595 NC_014560.1 512558 513703 D cag pathogenicity island protein I 512558..513703 Helicobacter pylori SJM180 9787248 YP_003928433.1 CDS HPSJM_02600 NC_014560.1 513700 514413 D cag pathogenicity island protein L 513700..514413 Helicobacter pylori SJM180 9787249 YP_003928434.1 CDS HPSJM_02605 NC_014560.1 514495 515415 R cag island protein complement(514495..515415) Helicobacter pylori SJM180 9787250 YP_003928435.1 CDS HPSJM_02610 NC_014560.1 515430 516560 R cag island protein complement(515430..516560) Helicobacter pylori SJM180 9787251 YP_003928436.1 CDS HPSJM_02615 NC_014560.1 517762 518142 D cag pathogenicity island protein Q 517762..518142 Helicobacter pylori SJM180 9787252 YP_003928437.1 CDS HPSJM_02620 NC_014560.1 518582 519181 D CAG pathogenicity island protein 13 518582..519181 Helicobacter pylori SJM180 9787253 YP_003928438.1 CDS HPSJM_02625 NC_014560.1 519383 520225 R CAG pathogenicity island protein 12 complement(519383..520225) Helicobacter pylori SJM180 9787254 YP_003928439.1 CDS HPSJM_02630 NC_014560.1 520261 520917 R cag island protein complement(520261..520917) Helicobacter pylori SJM180 9787255 YP_003928440.1 CDS HPSJM_02635 NC_014560.1 521298 522056 D COG3736 Type IV secretory pathway, component VirB8; cag pathogenicity island protein V 521298..522056 Helicobacter pylori SJM180 9787256 YP_003928441.1 CDS HPSJM_02640 NC_014560.1 522061 523668 D cag pathogenicity island protein W 522061..523668 Helicobacter pylori SJM180 9787257 YP_003928442.1 CDS HPSJM_02645 NC_014560.1 523721 525286 D COG3504 Type IV secretory pathway, VirB9 components; cag pathogenicity island protein X 523721..525286 Helicobacter pylori SJM180 9787258 YP_003928443.1 CDS HPSJM_02650 NC_014560.1 525301 530781 D COG2948 Type IV secretory pathway, VirB10 components; cag island protein 525301..530781 Helicobacter pylori SJM180 9787259 YP_003928444.1 CDS HPSJM_02655 NC_014560.1 530916 531515 D cag pathogenicity island protein (cag6) 530916..531515 Helicobacter pylori SJM180 9787260 YP_003928445.1 CDS HPSJM_02660 NC_014560.1 531520 532512 D COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; cag island protein, DNA transfer protein 531520..532512 Helicobacter pylori SJM180 9787261 YP_003928446.1 CDS HPSJM_02665 NC_014560.1 532521 534767 D COG3505 Type IV secretory pathway, VirD4 components; cag island protein, DNA transfer protein 532521..534767 Helicobacter pylori SJM180 9787262 YP_003928447.1 CDS HPSJM_02670 NC_014560.1 534886 535395 R cag pathogenicity island protein Gamma complement(534886..535395) Helicobacter pylori SJM180 9787263 YP_003928448.1 CDS HPSJM_02675 NC_014560.1 535405 536850 R cag pathogenicity island protein 3 complement(535405..536850) Helicobacter pylori SJM180 9787264 YP_003928449.1 CDS HPSJM_02680 NC_014560.1 536850 537200 R COG0551 Zn-finger domain associated with topoisomerase type I; cag pathogenicity island protein Epsilon complement(536850..537200) Helicobacter pylori SJM180 9787265 YP_003928450.1 CDS HPSJM_02685 NC_014560.1 537308 537655 R cag pathogenicity island protein (cag1) complement(537308..537655) Helicobacter pylori SJM180 9787266 YP_003928451.1 CDS HPSJM_02690 NC_014560.1 537827 538681 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 537827..538681 Helicobacter pylori SJM180 9787267 YP_003928452.1 CDS HPSJM_02695 NC_014560.1 538912 540357 R COG0174 Glutamine synthetase; glutamine synthetase complement(538912..540357) Helicobacter pylori SJM180 9787268 YP_003928453.1 CDS HPSJM_02700 NC_014560.1 540581 540883 D hypothetical protein 540581..540883 Helicobacter pylori SJM180 9787269 YP_003928454.1 CDS rplI NC_014560.1 541275 541724 D COG0359 Ribosomal protein L9; 50S ribosomal protein L9 541275..541724 Helicobacter pylori SJM180 9787270 YP_003928455.1 CDS HPSJM_02710 NC_014560.1 541728 542270 D COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease peptidase subunit 541728..542270 Helicobacter pylori SJM180 9787271 YP_003928456.1 CDS hslU NC_014560.1 542270 543601 D COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU 542270..543601 Helicobacter pylori SJM180 9787272 YP_003928457.1 CDS era NC_014560.1 543601 544506 D COG1159 GTPase; GTP-binding protein Era 543601..544506 Helicobacter pylori SJM180 9787273 YP_003928458.1 CDS HPSJM_02725 NC_014560.1 544503 545495 D COG3034 Uncharacterized protein conserved in bacteria; conserved hypothetical secreted protein 544503..545495 Helicobacter pylori SJM180 9787274 YP_003928459.1 CDS HPSJM_02730 NC_014560.1 545680 546354 D hypothetical protein 545680..546354 Helicobacter pylori SJM180 9787275 YP_003928460.1 CDS HPSJM_02735 NC_014560.1 546351 546527 D hypothetical protein 546351..546527 Helicobacter pylori SJM180 9787276 YP_003928461.1 CDS HPSJM_02740 NC_014560.1 546603 547385 D hypothetical protein 546603..547385 Helicobacter pylori SJM180 9787277 YP_003928462.1 CDS HPSJM_02755 NC_014560.1 548560 548775 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; hypothetical protein 548560..548775 Helicobacter pylori SJM180 9787278 YP_003928463.1 CDS HPSJM_02760 NC_014560.1 549053 549214 R urease-enhancing factor complement(549053..549214) Helicobacter pylori SJM180 9787279 YP_003928464.1 CDS HPSJM_02765 NC_014560.1 549621 553166 D cag pathogenicity island protein (cag26) 549621..553166 Helicobacter pylori SJM180 9787280 YP_003928465.1 CDS HPSJM_02770 NC_014560.1 553814 554077 D COG1112 Superfamily I DNA and RNA helicases and helicase subunits; hypothetical protein 553814..554077 Helicobacter pylori SJM180 9787281 YP_003928466.1 CDS HPSJM_02775 NC_014560.1 554233 555000 R COG0796 Glutamate racemase; glutamate racemase complement(554233..555000) Helicobacter pylori SJM180 9787282 YP_003928467.1 CDS rho NC_014560.1 555037 556353 R COG1158 Transcription termination factor; transcription termination factor Rho complement(555037..556353) Helicobacter pylori SJM180 9787283 YP_003928468.1 CDS rpmE NC_014560.1 556617 556820 D COG0254 Ribosomal protein L31; 50S ribosomal protein L31 556617..556820 Helicobacter pylori SJM180 9787284 YP_003928469.1 CDS HPSJM_02790 NC_014560.1 556845 557708 D COG0313 Predicted methyltransferases; putative methylase 556845..557708 Helicobacter pylori SJM180 9787285 YP_003928470.1 CDS HPSJM_02795 NC_014560.1 557721 558404 D COG0566 rRNA methylases; RNA methyltransferase 557721..558404 Helicobacter pylori SJM180 9787286 YP_003928471.1 CDS HPSJM_02800 NC_014560.1 558417 559391 D hypothetical protein 558417..559391 Helicobacter pylori SJM180 9787287 YP_003928472.1 CDS HPSJM_02805 NC_014560.1 559388 560209 D COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 559388..560209 Helicobacter pylori SJM180 9787288 YP_003928473.1 CDS HPSJM_02820 NC_014560.1 560926 561117 D hypothetical protein 560926..561117 Helicobacter pylori SJM180 9787289 YP_003928474.1 CDS HPSJM_02825 NC_014560.1 561191 562129 R COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(561191..562129) Helicobacter pylori SJM180 9787290 YP_003928475.1 CDS HPSJM_02830 NC_014560.1 562152 563390 R COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II complement(562152..563390) Helicobacter pylori SJM180 9787291 YP_003928476.1 CDS acpP NC_014560.1 563494 563730 R COG0236 Acyl carrier protein; acyl carrier protein complement(563494..563730) Helicobacter pylori SJM180 9787292 YP_003928477.1 CDS fabG NC_014560.1 563956 564699 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-(acyl-carrier-protein) reductase complement(563956..564699) Helicobacter pylori SJM180 9787293 YP_003928478.1 CDS rpsU NC_014560.1 564738 564950 R COG0828 Ribosomal protein S21; 30S ribosomal protein S21 complement(564738..564950) Helicobacter pylori SJM180 9787294 YP_003928479.1 CDS HPSJM_02850 NC_014560.1 565051 566301 R hypothetical protein complement(565051..566301) Helicobacter pylori SJM180 9787295 YP_003928480.1 CDS HPSJM_02855 NC_014560.1 566476 566721 D hypothetical protein 566476..566721 Helicobacter pylori SJM180 9787296 YP_003928481.1 CDS HPSJM_02860 NC_014560.1 566745 567392 R COG3059 Predicted membrane protein; hypothetical protein complement(566745..567392) Helicobacter pylori SJM180 9787297 YP_003928482.1 CDS dapF NC_014560.1 567505 568326 R COG0253 Diaminopimelate epimerase; diaminopimelate epimerase complement(567505..568326) Helicobacter pylori SJM180 9787298 YP_003928483.1 CDS HPSJM_02870 NC_014560.1 568441 569487 D COG0628 Predicted permease; hypothetical protein 568441..569487 Helicobacter pylori SJM180 9787299 YP_003928484.1 CDS HPSJM_02875 NC_014560.1 569628 570395 R hypothetical protein complement(569628..570395) Helicobacter pylori SJM180 9787300 YP_003928485.1 CDS HPSJM_02880 NC_014560.1 570539 571639 R COG0012 Predicted GTPase, probable translation factor; GTP-dependent nucleic acid-binding protein EngD complement(570539..571639) Helicobacter pylori SJM180 9787301 YP_003928486.1 CDS HPSJM_02885 NC_014560.1 571641 573131 R COG0260 Leucyl aminopeptidase; leucyl aminopeptidase complement(571641..573131) Helicobacter pylori SJM180 9787302 YP_003928487.1 CDS HPSJM_02890 NC_014560.1 573179 573757 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(573179..573757) Helicobacter pylori SJM180 9787303 YP_003928488.1 CDS HPSJM_02895 NC_014560.1 573772 574311 R COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase complement(573772..574311) Helicobacter pylori SJM180 9787304 YP_003928489.1 CDS HPSJM_02900 NC_014560.1 574373 574705 R hypothetical protein complement(574373..574705) Helicobacter pylori SJM180 9787305 YP_003928490.1 CDS HPSJM_02905 NC_014560.1 574757 575212 R COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B complement(574757..575212) Helicobacter pylori SJM180 9787306 YP_003928491.1 CDS HPSJM_02910 NC_014560.1 575233 575931 R COG1994 Zn-dependent proteases; membrane protein complement(575233..575931) Helicobacter pylori SJM180 9787307 YP_003928492.1 CDS HPSJM_02915 NC_014560.1 575940 576812 R COG0681 Signal peptidase I; signal peptidase I (lepB) complement(575940..576812) Helicobacter pylori SJM180 9787308 YP_003928493.1 CDS HPSJM_02920 NC_014560.1 576813 577685 R COG0190 5, 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5, 10-methylene-tetrahydrofolate dehydrogenase/ 5, 10-methylene-tetrahydrofolate cyclohydrolase complement(576813..577685) Helicobacter pylori SJM180 9787309 YP_003928494.1 CDS HPSJM_02925 NC_014560.1 577766 579817 R COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; hypothetical protein complement(577766..579817) Helicobacter pylori SJM180 9787310 YP_003928495.1 CDS HPSJM_02930 NC_014560.1 579823 580377 R hypothetical protein complement(579823..580377) Helicobacter pylori SJM180 9787311 YP_003928496.1 CDS HPSJM_02935 NC_014560.1 580384 581406 R COG4692 Predicted neuraminidase (sialidase); hypothetical protein complement(580384..581406) Helicobacter pylori SJM180 9787312 YP_003928497.1 CDS HPSJM_02940 NC_014560.1 581480 582499 R COG0418 Dihydroorotase; dihydroorotase complement(581480..582499) Helicobacter pylori SJM180 9787313 YP_003928498.1 CDS HPSJM_02945 NC_014560.1 582503 583465 R COG0810 Periplasmic protein TonB, links inner and outer membranes; putative siderophore-mediated iron transport protein complement(582503..583465) Helicobacter pylori SJM180 9787314 YP_003928499.1 CDS HPSJM_02950 NC_014560.1 583449 584330 R hypothetical protein complement(583449..584330) Helicobacter pylori SJM180 9787315 YP_003928500.1 CDS HPSJM_02955 NC_014560.1 584327 584698 R COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein complement(584327..584698) Helicobacter pylori SJM180 9787316 YP_003928501.1 CDS HPSJM_02960 NC_014560.1 584780 585421 R COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(584780..585421) Helicobacter pylori SJM180 9787317 YP_003928502.1 CDS HPSJM_02965 NC_014560.1 585418 585654 R COG1918 Fe2+ transport system protein A; hypothetical protein complement(585418..585654) Helicobacter pylori SJM180 9787318 YP_003928503.1 CDS HPSJM_02970 NC_014560.1 585656 588589 R hypothetical protein complement(585656..588589) Helicobacter pylori SJM180 9787319 YP_003928504.1 CDS HPSJM_02975 NC_014560.1 588507 589496 D COG1559 Predicted periplasmic solute-binding protein; hypothetical protein 588507..589496 Helicobacter pylori SJM180 9787320 YP_003928505.1 CDS oorD NC_014560.1 589681 590022 D COG1146 Ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 589681..590022 Helicobacter pylori SJM180 9787321 YP_003928506.1 CDS oorA NC_014560.1 590022 591149 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 590022..591149 Helicobacter pylori SJM180 9787322 YP_003928507.1 CDS oorB NC_014560.1 591151 591972 D COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 591151..591972 Helicobacter pylori SJM180 9787323 YP_003928508.1 CDS oorC NC_014560.1 591972 592526 D COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 591972..592526 Helicobacter pylori SJM180 9787324 YP_003928509.1 CDS HPSJM_03000 NC_014560.1 592639 594417 D COG5610 Predicted hydrolase (HAD superfamily); hypothetical protein 592639..594417 Helicobacter pylori SJM180 9787325 YP_003928510.1 CDS HPSJM_03005 NC_014560.1 594561 594725 D hypothetical protein 594561..594725 Helicobacter pylori SJM180 9787326 YP_003928511.1 CDS HPSJM_03010 NC_014560.1 594735 596207 D COG1495 Disulfide bond formation protein DsbB; putative disulfide oxidoreductase B (DsbB-like protein); putative membrane protein 594735..596207 Helicobacter pylori SJM180 9787327 YP_003928512.1 CDS HPSJM_03015 NC_014560.1 596405 596524 R hypothetical protein complement(596405..596524) Helicobacter pylori SJM180 9787328 YP_003928513.1 CDS HPSJM_03020 NC_014560.1 596682 597260 D tumor necrosis factor alpha-inducing protein 596682..597260 Helicobacter pylori SJM180 9787329 YP_003928514.1 CDS HPSJM_03025 NC_014560.1 597263 599245 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1A complement(597263..599245) Helicobacter pylori SJM180 9787330 YP_003928515.1 CDS HPSJM_03030 NC_014560.1 599246 600367 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase complement(599246..600367) Helicobacter pylori SJM180 9787331 YP_003928516.1 CDS HPSJM_03035 NC_014560.1 600390 601691 R COG0840 Methyl-accepting chemotaxis protein; methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) complement(600390..601691) Helicobacter pylori SJM180 9787332 YP_003928517.1 CDS HPSJM_03040 NC_014560.1 601762 603264 R COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (spaB) complement(601762..603264) Helicobacter pylori SJM180 9787333 YP_003928518.1 CDS HPSJM_03045 NC_014560.1 603698 605230 D COG1344 Flagellin and related hook-associated proteins; flagellin A 603698..605230 Helicobacter pylori SJM180 9787334 YP_003928519.1 CDS HPSJM_03050 NC_014560.1 605359 606015 D COG2231 Uncharacterized protein related to Endonuclease III; 3-methyladenine DNA glycosylase 605359..606015 Helicobacter pylori SJM180 9787335 YP_003928520.1 CDS HPSJM_03055 NC_014560.1 606012 606629 D hypothetical protein 606012..606629 Helicobacter pylori SJM180 9787336 YP_003928521.1 CDS hemE NC_014560.1 606698 607717 D COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 606698..607717 Helicobacter pylori SJM180 9787337 YP_003928522.1 CDS HPSJM_03065 NC_014560.1 607728 609161 D COG1538 Outer membrane protein; outer-membrane protein of the hefABC efflux system HefA 607728..609161 Helicobacter pylori SJM180 9787338 YP_003928523.1 CDS HPSJM_03070 NC_014560.1 609171 609875 D COG0845 Membrane-fusion protein; membrane fusion protein of the hefABC efflux system HefB 609171..609875 Helicobacter pylori SJM180 9787339 YP_003928524.1 CDS HPSJM_03075 NC_014560.1 609888 612968 D COG0841 Cation/multidrug efflux pump; cytoplasmic pump protein of the hefABC efflux system HefC 609888..612968 Helicobacter pylori SJM180 9787340 YP_003928525.1 CDS HPSJM_03080 NC_014560.1 612965 613534 D COG0015 Adenylosuccinate lyase; hypothetical protein 612965..613534 Helicobacter pylori SJM180 9787341 YP_003928526.1 CDS HPSJM_03085 NC_014560.1 613678 623244 D putative vacuolating cytotoxin (VacA)-like protein 613678..623244 Helicobacter pylori SJM180 9787342 YP_003928527.1 CDS HPSJM_03090 NC_014560.1 623303 623656 R COG0842 ABC-type multidrug transport system, permease component; ABC-type multidrug transport system, permease component complement(623303..623656) Helicobacter pylori SJM180 9787343 YP_003928528.1 CDS HPSJM_03095 NC_014560.1 623820 624059 R COG0842 ABC-type multidrug transport system, permease component; ABC transporter, permease complement(623820..624059) Helicobacter pylori SJM180 9787344 YP_003928529.1 CDS HPSJM_03100 NC_014560.1 624059 624418 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter; ATP-binding protein complement(624059..624418) Helicobacter pylori SJM180 9787345 YP_003928530.1 CDS HPSJM_03105 NC_014560.1 624493 624759 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein complement(624493..624759) Helicobacter pylori SJM180 9787346 YP_003928531.1 CDS HPSJM_03110 NC_014560.1 625075 625407 R COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; hypothetical protein complement(625075..625407) Helicobacter pylori SJM180 9787347 YP_003928532.1 CDS ligA NC_014560.1 625531 627501 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA complement(625531..627501) Helicobacter pylori SJM180 9787348 YP_003928533.1 CDS HPSJM_03120 NC_014560.1 627579 628520 D COG0835 Chemotaxis signal transduction protein; chemotaxis protein (cheV) 627579..628520 Helicobacter pylori SJM180 9787349 YP_003928534.1 CDS aspS NC_014560.1 628555 630288 D COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 628555..630288 Helicobacter pylori SJM180 9787350 YP_003928535.1 CDS adk NC_014560.1 630305 630880 D COG0563 Adenylate kinase and related kinases; adenylate kinase 630305..630880 Helicobacter pylori SJM180 9787351 YP_003928536.1 CDS HPSJM_03135 NC_014560.1 630905 631903 D COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 630905..631903 Helicobacter pylori SJM180 9787352 YP_003928537.1 CDS HPSJM_03140 NC_014560.1 631908 632513 D COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 631908..632513 Helicobacter pylori SJM180 9787353 YP_003928538.1 CDS HPSJM_03145 NC_014560.1 632455 633261 D putative lipopolysaccharide biosynthesis protein 632455..633261 Helicobacter pylori SJM180 9787354 YP_003928539.1 CDS HPSJM_03150 NC_014560.1 633317 633838 D COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 633317..633838 Helicobacter pylori SJM180 9787355 YP_003928540.1 CDS HPSJM_03155 NC_014560.1 633979 636231 R COG1193 Mismatch repair ATPase (MutS family); recombination and DNA strand exchange inhibitor protein complement(633979..636231) Helicobacter pylori SJM180 9787356 YP_003928541.1 CDS HPSJM_03160 NC_014560.1 636224 636604 R hypothetical protein complement(636224..636604) Helicobacter pylori SJM180 9787357 YP_003928542.1 CDS murC NC_014560.1 636604 637953 R COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(636604..637953) Helicobacter pylori SJM180 9787358 YP_003928543.1 CDS HPSJM_03170 NC_014560.1 637946 639073 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; hypothetical protein complement(637946..639073) Helicobacter pylori SJM180 9787359 YP_003928544.1 CDS ispG NC_014560.1 639193 640272 D COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 639193..640272 Helicobacter pylori SJM180 9787360 YP_003928545.1 CDS HPSJM_03180 NC_014560.1 640275 641480 D COG2171 Tetrahydrodipicolinate N-succinyltransferase; tetrahydrodipicolinate N-succinyltransferase (dapD) 640275..641480 Helicobacter pylori SJM180 9787361 YP_003928546.1 CDS HPSJM_03185 NC_014560.1 641492 642550 D COG0790 FOG: TPR repeat, SEL1 subfamily; cysteine-rich protein F 641492..642550 Helicobacter pylori SJM180 9787362 YP_003928547.1 CDS HPSJM_03190 NC_014560.1 642670 644718 D COG1479 Uncharacterized conserved protein; hypothetical protein 642670..644718 Helicobacter pylori SJM180 9787363 YP_003928548.1 CDS HPSJM_03195 NC_014560.1 644766 645350 R COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); modulator of drug activity B complement(644766..645350) Helicobacter pylori SJM180 9787364 YP_003928549.1 CDS HPSJM_03200 NC_014560.1 645347 645457 R hypothetical protein complement(645347..645457) Helicobacter pylori SJM180 9787365 YP_003928550.1 CDS HPSJM_03205 NC_014560.1 645511 646665 D COG1740 Ni, Fe-hydrogenase I small subunit; Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor) 645511..646665 Helicobacter pylori SJM180 9787366 YP_003928551.1 CDS HPSJM_03210 NC_014560.1 646675 648411 D COG0374 Ni, Fe-hydrogenase I large subunit; nickel-dependent hydrogenase, large subunit 646675..648411 Helicobacter pylori SJM180 9787367 YP_003928552.1 CDS HPSJM_03215 NC_014560.1 648424 649098 D COG1969 Ni, Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 648424..649098 Helicobacter pylori SJM180 9787368 YP_003928553.1 CDS HPSJM_03220 NC_014560.1 649095 649631 D COG0680 Ni, Fe-hydrogenase maturation factor; hydrogenase expression/formation protein 649095..649631 Helicobacter pylori SJM180 9787369 YP_003928554.1 CDS HPSJM_03225 NC_014560.1 649633 651171 D hypothetical protein 649633..651171 Helicobacter pylori SJM180 9787370 YP_003928555.1 CDS HPSJM_03230 NC_014560.1 651176 651529 R hypothetical protein complement(651176..651529) Helicobacter pylori SJM180 9787371 YP_003928556.1 CDS HPSJM_03235 NC_014560.1 651726 652178 R hypothetical protein complement(651726..652178) Helicobacter pylori SJM180 9787372 YP_003928557.1 CDS HPSJM_03240 NC_014560.1 652598 653284 D outer membrane protein (omp13) 652598..653284 Helicobacter pylori SJM180 9787373 YP_003928558.1 CDS HPSJM_03245 NC_014560.1 653522 654199 R COG0603 Predicted PP-loop superfamily ATPase; hypothetical protein complement(653522..654199) Helicobacter pylori SJM180 9787374 YP_003928559.1 CDS HPSJM_03250 NC_014560.1 654199 654303 R hypothetical protein complement(654199..654303) Helicobacter pylori SJM180 9787375 YP_003928560.1 CDS HPSJM_03255 NC_014560.1 654263 655471 D COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; putative polynucleotide adenylyltransferase; putative poly(A) polymerase 654263..655471 Helicobacter pylori SJM180 9787376 YP_003928561.1 CDS HPSJM_03260 NC_014560.1 655494 655988 D hypothetical protein 655494..655988 Helicobacter pylori SJM180 9787377 YP_003928562.1 CDS HPSJM_03265 NC_014560.1 656045 656860 D COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; putative 3-hydroxy acid dehydrogenase 656045..656860 Helicobacter pylori SJM180 9787378 YP_003928563.1 CDS HPSJM_03270 NC_014560.1 656862 657515 D COG0778 Nitroreductase; NAD(P)H-flavin oxidoreductase 656862..657515 Helicobacter pylori SJM180 9787379 YP_003928564.1 CDS HPSJM_03275 NC_014560.1 657681 659000 D COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamylglutaminyl-tRNA synthetase 657681..659000 Helicobacter pylori SJM180 9787380 YP_003928565.1 CDS HPSJM_03280 NC_014560.1 658997 659290 D COG0762 Predicted integral membrane protein; hypothetical protein 658997..659290 Helicobacter pylori SJM180 9787381 YP_003928566.1 CDS HPSJM_03285 NC_014560.1 659299 660981 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); soluble lytic murein transglycosylase 659299..660981 Helicobacter pylori SJM180 9787382 YP_003928567.1 CDS HPSJM_03290 NC_014560.1 660978 661799 D COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 660978..661799 Helicobacter pylori SJM180 9787383 YP_003928568.1 CDS HPSJM_03295 NC_014560.1 661811 662218 D hypothetical protein 661811..662218 Helicobacter pylori SJM180 9787384 YP_003928569.1 CDS HPSJM_03300 NC_014560.1 662221 663489 D COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 662221..663489 Helicobacter pylori SJM180 9787385 YP_003928570.1 CDS aspA NC_014560.1 663547 664953 D COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 663547..664953 Helicobacter pylori SJM180 9787386 YP_003928571.1 CDS HPSJM_03310 NC_014560.1 665010 665588 D COG1573 Uracil-DNA glycosylase; hypothetical protein 665010..665588 Helicobacter pylori SJM180 9787387 YP_003928572.1 CDS HPSJM_03315 NC_014560.1 665597 666964 R Alpha1, 3-fucosyltransferase complement(665597..666964) Helicobacter pylori SJM180 9787388 YP_003928573.1 CDS HPSJM_03320 NC_014560.1 667004 667627 R COG0560 Phosphoserine phosphatase; phosphoserine phosphatase complement(667004..667627) Helicobacter pylori SJM180 9787389 YP_003928574.1 CDS HPSJM_03325 NC_014560.1 667642 668145 R COG1528 Ferritin-like protein; nonheme iron-containing ferritin complement(667642..668145) Helicobacter pylori SJM180 9787390 YP_003928575.1 CDS HPSJM_03330 NC_014560.1 668447 669529 D COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 668447..669529 Helicobacter pylori SJM180 9787391 YP_003928576.1 CDS HPSJM_03335 NC_014560.1 669702 672362 D COG4775 Outer membrane protein/protective antigen OMA87; protective surface antigen D15 669702..672362 Helicobacter pylori SJM180 9787392 YP_003928577.1 CDS HPSJM_03340 NC_014560.1 672364 673425 D COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 672364..673425 Helicobacter pylori SJM180 9787393 YP_003928578.1 CDS HPSJM_03345 NC_014560.1 673431 674732 D COG0612 Predicted Zn-dependent peptidases; processing zinc-metalloprotease 673431..674732 Helicobacter pylori SJM180 9787394 YP_003928579.1 CDS gatB NC_014560.1 674732 676156 D COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); aspartyl/glutamyl-tRNA amidotransferase subunit B 674732..676156 Helicobacter pylori SJM180 9787395 YP_003928580.1 CDS HPSJM_03355 NC_014560.1 676156 677358 D COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 676156..677358 Helicobacter pylori SJM180 9787396 YP_003928581.1 CDS HPSJM_03360 NC_014560.1 677369 678376 D hypothetical protein 677369..678376 Helicobacter pylori SJM180 9787397 YP_003928582.1 CDS rnhA NC_014560.1 678378 678809 D COG0328 Ribonuclease HI; ribonuclease H 678378..678809 Helicobacter pylori SJM180 9787398 YP_003928583.1 CDS rnc NC_014560.1 678821 679540 D COG0571 dsRNA-specific ribonuclease; ribonuclease III 678821..679540 Helicobacter pylori SJM180 9787399 YP_003928584.1 CDS HPSJM_03375 NC_014560.1 679537 680634 D COG0082 Chorismate synthase; chorismate synthase 679537..680634 Helicobacter pylori SJM180 9787400 YP_003928585.1 CDS HPSJM_03380 NC_014560.1 680671 681186 D hypothetical protein 680671..681186 Helicobacter pylori SJM180 9787401 YP_003928586.1 CDS HPSJM_03385 NC_014560.1 681186 682559 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 681186..682559 Helicobacter pylori SJM180 9787402 YP_003928587.1 CDS HPSJM_03390 NC_014560.1 682556 683845 D COG0247 Fe-S oxidoreductase; putative anaerobic glycerol-3-phosphate dehydrogenase (G-3-P dehydrogenase) 682556..683845 Helicobacter pylori SJM180 9787403 YP_003928588.1 CDS HPSJM_03395 NC_014560.1 683923 685956 D COG4889 Predicted helicase; type II R-M system protein 683923..685956 Helicobacter pylori SJM180 9787404 YP_003928589.1 CDS HPSJM_03400 NC_014560.1 685910 688753 D COG4889 Predicted helicase; hypothetical protein 685910..688753 Helicobacter pylori SJM180 9787405 YP_003928590.1 CDS HPSJM_03405 NC_014560.1 688746 688904 D hypothetical protein 688746..688904 Helicobacter pylori SJM180 9787406 YP_003928591.1 CDS HPSJM_03410 NC_014560.1 689000 689812 D outer membrane protein (omp14) 689000..689812 Helicobacter pylori SJM180 9787407 YP_003928592.1 CDS HPSJM_03415 NC_014560.1 689971 691143 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 689971..691143 Helicobacter pylori SJM180 9787408 YP_003928593.1 CDS HPSJM_03420 NC_014560.1 691345 692469 D hypothetical protein 691345..692469 Helicobacter pylori SJM180 9787409 YP_003928594.1 CDS HPSJM_03425 NC_014560.1 692469 692849 D hypothetical protein 692469..692849 Helicobacter pylori SJM180 9787410 YP_003928595.1 CDS HPSJM_03430 NC_014560.1 692972 693109 D hypothetical protein 692972..693109 Helicobacter pylori SJM180 9787411 YP_003928596.1 CDS HPSJM_03435 NC_014560.1 693152 694447 D hypothetical protein 693152..694447 Helicobacter pylori SJM180 9787412 YP_003928597.1 CDS HPSJM_03440 NC_014560.1 694444 695514 D COG0582 Integrase; integrase-recombinase protein 694444..695514 Helicobacter pylori SJM180 9787413 YP_003928598.1 CDS HPSJM_03445 NC_014560.1 695579 696085 R COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(695579..696085) Helicobacter pylori SJM180 9787414 YP_003928599.1 CDS HPSJM_03450 NC_014560.1 696089 696856 R COG0730 Predicted permeases; hypothetical protein complement(696089..696856) Helicobacter pylori SJM180 9787415 YP_003928600.1 CDS HPSJM_03455 NC_014560.1 696971 697918 R COG0673 Predicted dehydrogenases and related proteins; putative lipopolysaccharide biosynthesis protein complement(696971..697918) Helicobacter pylori SJM180 9787416 YP_003928601.1 CDS HPSJM_03460 NC_014560.1 697979 700345 R COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha complement(697979..700345) Helicobacter pylori SJM180 9787417 YP_003928602.1 CDS HPSJM_03465 NC_014560.1 700517 701023 R hypothetical protein complement(700517..701023) Helicobacter pylori SJM180 9787418 YP_003928603.1 CDS HPSJM_03470 NC_014560.1 701063 701383 R hypothetical protein complement(701063..701383) Helicobacter pylori SJM180 9787419 YP_003928604.1 CDS glmU NC_014560.1 701584 702885 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(701584..702885) Helicobacter pylori SJM180 9787420 YP_003928605.1 CDS fliP NC_014560.1 702809 703714 D COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 702809..703714 Helicobacter pylori SJM180 9787421 YP_003928606.1 CDS HPSJM_03485 NC_014560.1 703753 706056 R COG4772 Outer membrane receptor for Fe3+-dicitrate; Iron(III) dicitrate transport protein FecA; putative signal peptide complement(703753..706056) Helicobacter pylori SJM180 9787422 YP_003928607.1 CDS HPSJM_03490 NC_014560.1 706306 708234 R COG0370 Fe2+ transport system protein B; iron(II) transport protein (feoB) complement(706306..708234) Helicobacter pylori SJM180 9787423 YP_003928608.1 CDS HPSJM_03495 NC_014560.1 708372 709184 D COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; hypothetical protein 708372..709184 Helicobacter pylori SJM180 9787424 YP_003928609.1 CDS HPSJM_03500 NC_014560.1 709564 710739 D COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 709564..710739 Helicobacter pylori SJM180 9787425 YP_003928610.1 CDS HPSJM_03505 NC_014560.1 710750 711448 D COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA-transferase subunit A 710750..711448 Helicobacter pylori SJM180 9787426 YP_003928611.1 CDS HPSJM_03510 NC_014560.1 711445 712068 D COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA-transferase subunit B 711445..712068 Helicobacter pylori SJM180 9787427 YP_003928612.1 CDS HPSJM_03515 NC_014560.1 712087 713451 D COG2031 Short chain fatty acids transporter; short-chain fatty acids transporter 712087..713451 Helicobacter pylori SJM180 9787428 YP_003928613.1 CDS HPSJM_03520 NC_014560.1 713580 714590 D COG3528 Uncharacterized protein conserved in bacteria; putative Outer membrane protein 713580..714590 Helicobacter pylori SJM180 9787429 YP_003928614.1 CDS HPSJM_03525 NC_014560.1 714825 716966 D COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; hydantoin utilization protein A 714825..716966 Helicobacter pylori SJM180 9787430 YP_003928615.1 CDS HPSJM_03530 NC_014560.1 716978 719275 D COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit; N-methyl hydantoinase 716978..719275 Helicobacter pylori SJM180 9787431 YP_003928616.1 CDS HPSJM_03535 NC_014560.1 719292 719792 D COG4647 Acetone carboxylase, gamma subunit; hypothetical protein 719292..719792 Helicobacter pylori SJM180 9787432 YP_003928617.1 CDS HPSJM_03540 NC_014560.1 720127 721155 D hypothetical protein 720127..721155 Helicobacter pylori SJM180 9787433 YP_003928618.1 CDS HPSJM_03545 NC_014560.1 721148 721534 D COG0818 Diacylglycerol kinase; diacylglycerol kinase 721148..721534 Helicobacter pylori SJM180 9787434 YP_003928619.1 CDS HPSJM_03550 NC_014560.1 721550 724051 D COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 721550..724051 Helicobacter pylori SJM180 9787435 YP_003928620.1 CDS HPSJM_03555 NC_014560.1 724102 724524 D hypothetical protein 724102..724524 Helicobacter pylori SJM180 9787436 YP_003928621.1 CDS HPSJM_03560 NC_014560.1 724521 725666 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; transcriptional activator of flagella proteins 724521..725666 Helicobacter pylori SJM180 9787437 YP_003928622.1 CDS uvrA NC_014560.1 726324 729149 R COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A complement(726324..729149) Helicobacter pylori SJM180 9787438 YP_003928623.1 CDS HPSJM_03570 NC_014560.1 729314 730135 D outer membrane protein 729314..730135 Helicobacter pylori SJM180 9787439 YP_003928624.1 CDS mraW NC_014560.1 730307 731233 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 730307..731233 Helicobacter pylori SJM180 9787440 YP_003928625.1 CDS HPSJM_03580 NC_014560.1 731254 731598 D hypothetical protein 731254..731598 Helicobacter pylori SJM180 9787441 YP_003928626.1 CDS HPSJM_03585 NC_014560.1 731598 731783 D hypothetical protein 731598..731783 Helicobacter pylori SJM180 9787442 YP_003928627.1 CDS HPSJM_03590 NC_014560.1 732047 732949 D COG1912 Uncharacterized conserved protein; hypothetical protein 732047..732949 Helicobacter pylori SJM180 9787443 YP_003928628.1 CDS HPSJM_03595 NC_014560.1 733190 735175 D putative outer membrane protein HomB 733190..735175 Helicobacter pylori SJM180 9787444 YP_003928629.1 CDS HPSJM_03600 NC_014560.1 735380 736600 D COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 735380..736600 Helicobacter pylori SJM180 9787445 YP_003928630.1 CDS HPSJM_03605 NC_014560.1 736600 737304 D COG3177 Uncharacterized conserved protein; hypothetical protein 736600..737304 Helicobacter pylori SJM180 9787446 YP_003928631.1 CDS HPSJM_03610 NC_014560.1 737316 738560 R COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 complement(737316..738560) Helicobacter pylori SJM180 9787447 YP_003928632.1 CDS HPSJM_03615 NC_014560.1 738563 739285 R COG1137 ABC-type (unclassified) transport system, ATPase component; ABC-type transport system, ATP binding protein complement(738563..739285) Helicobacter pylori SJM180 9787448 YP_003928633.1 CDS HPSJM_03620 NC_014560.1 739298 739699 R COG0802 Predicted ATPase or kinase; hypothetical protein complement(739298..739699) Helicobacter pylori SJM180 9787449 YP_003928634.1 CDS HPSJM_03625 NC_014560.1 739696 741465 R COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau complement(739696..741465) Helicobacter pylori SJM180 9787450 YP_003928635.1 CDS HPSJM_03630 NC_014560.1 741534 742166 R COG1279 Lysine efflux permease; hypothetical protein complement(741534..742166) Helicobacter pylori SJM180 9787451 YP_003928636.1 CDS HPSJM_03635 NC_014560.1 742429 742851 D hypothetical protein 742429..742851 Helicobacter pylori SJM180 9787452 YP_003928637.1 CDS HPSJM_03640 NC_014560.1 742880 743341 D hypothetical protein 742880..743341 Helicobacter pylori SJM180 9787453 YP_003928638.1 CDS HPSJM_03645 NC_014560.1 743742 745586 D outer membrane protein SabB/HopO 743742..745586 Helicobacter pylori SJM180 9787454 YP_003928639.1 CDS HPSJM_03650 NC_014560.1 745725 746723 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II complement(745725..746723) Helicobacter pylori SJM180 9787455 YP_003928640.1 CDS HPSJM_03655 NC_014560.1 746853 748184 D COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 746853..748184 Helicobacter pylori SJM180 9787456 YP_003928641.1 CDS HPSJM_03660 NC_014560.1 748259 750223 R outer membrane protein SabA complement(748259..750223) Helicobacter pylori SJM180 9787457 YP_003928642.1 CDS HPSJM_03665 NC_014560.1 750440 751357 R outer membrane protein complement(750440..751357) Helicobacter pylori SJM180 9787458 YP_003928643.1 CDS HPSJM_03670 NC_014560.1 751327 752313 R COG0042 tRNA-dihydrouridine synthase; putative transcriptional regulator complement(751327..752313) Helicobacter pylori SJM180 9787459 YP_003928644.1 CDS HPSJM_03675 NC_014560.1 752405 753421 R COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase complement(752405..753421) Helicobacter pylori SJM180 9787460 YP_003928645.1 CDS HPSJM_03680 NC_014560.1 753457 754524 R hypothetical protein complement(753457..754524) Helicobacter pylori SJM180 9787461 YP_003928646.1 CDS HPSJM_03685 NC_014560.1 754533 754838 R hypothetical protein complement(754533..754838) Helicobacter pylori SJM180 9787462 YP_003928647.1 CDS HPSJM_03690 NC_014560.1 754771 754890 D hypothetical protein 754771..754890 Helicobacter pylori SJM180 9787463 YP_003928648.1 CDS HPSJM_03695 NC_014560.1 754938 756650 R COG0699 Predicted GTPases (dynamin-related); hypothetical protein complement(754938..756650) Helicobacter pylori SJM180 9787464 YP_003928649.1 CDS HPSJM_03700 NC_014560.1 756647 756886 R hypothetical protein complement(756647..756886) Helicobacter pylori SJM180 9787465 YP_003928650.1 CDS HPSJM_03715 NC_014560.1 758419 758559 R hypothetical protein complement(758419..758559) Helicobacter pylori SJM180 9787466 YP_003928651.1 CDS HPSJM_03720 NC_014560.1 758613 759932 R COG0621 2-methylthioadenine synthetase; hypothetical protein complement(758613..759932) Helicobacter pylori SJM180 9787467 YP_003928652.1 CDS HPSJM_03725 NC_014560.1 759934 760395 R COG2236 Predicted phosphoribosyltransferases; putative nucleotide phosphoribosyltransferase complement(759934..760395) Helicobacter pylori SJM180 9787468 YP_003928653.1 CDS HPSJM_03730 NC_014560.1 760404 761513 R COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; putative aminotransferase complement(760404..761513) Helicobacter pylori SJM180 9787469 YP_003928654.1 CDS HPSJM_03735 NC_014560.1 761660 762136 D COG1267 Phosphatidylglycerophosphatase A and related proteins; hypothetical protein 761660..762136 Helicobacter pylori SJM180 9787470 YP_003928655.1 CDS ddl NC_014560.1 762214 763257 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 762214..763257 Helicobacter pylori SJM180 9787471 YP_003928656.1 CDS HPSJM_03745 NC_014560.1 763257 763982 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-oxohepta-2, 4-dienoate hydrolase 763257..763982 Helicobacter pylori SJM180 9787472 YP_003928657.1 CDS HPSJM_03750 NC_014560.1 763969 765450 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; D-alanyl-D-alanine-adding enzyme 763969..765450 Helicobacter pylori SJM180 9787473 YP_003928658.1 CDS HPSJM_03755 NC_014560.1 765460 765945 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) family protein 765460..765945 Helicobacter pylori SJM180 9787474 YP_003928659.1 CDS HPSJM_03760 NC_014560.1 766010 766966 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 766010..766966 Helicobacter pylori SJM180 9787475 YP_003928660.1 CDS HPSJM_03765 NC_014560.1 767027 768172 R COG0772 Bacterial cell division membrane protein; Rod shape-determining protein RodA; putative membrane protein complement(767027..768172) Helicobacter pylori SJM180 9787477 YP_003928661.1 CDS HPSJM_03770 NC_014560.1 768195 768749 R COG3597 Uncharacterized protein/domain associated with GTPases; hypothetical protein complement(768195..768749) Helicobacter pylori SJM180 9787478 YP_003928662.1 CDS HPSJM_03775 NC_014560.1 768953 769408 R COG3596 Predicted GTPase; hypothetical protein complement(768953..769408) Helicobacter pylori SJM180 9787479 YP_003928663.1 CDS HPSJM_03780 NC_014560.1 769544 770527 D COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 769544..770527 Helicobacter pylori SJM180 9787480 YP_003928664.1 CDS HPSJM_03785 NC_014560.1 770490 771737 D hypothetical protein 770490..771737 Helicobacter pylori SJM180 9787481 YP_003928665.1 CDS HPSJM_03790 NC_014560.1 771748 772929 D COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 771748..772929 Helicobacter pylori SJM180 9787482 YP_003928666.1 CDS HPSJM_03795 NC_014560.1 772926 773597 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; cell division protein 772926..773597 Helicobacter pylori SJM180 9787483 YP_003928667.1 CDS HPSJM_03800 NC_014560.1 773584 774390 D COG2177 Cell division protein; cell division membrane protein (ftsX) 773584..774390 Helicobacter pylori SJM180 9787484 YP_003928668.1 CDS HPSJM_03805 NC_014560.1 774383 775585 D COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein 774383..775585 Helicobacter pylori SJM180 9787485 YP_003928669.1 CDS HPSJM_03810 NC_014560.1 775679 776038 D COG1334 Uncharacterized flagellar protein FlaG; flagellar protein FlaG 775679..776038 Helicobacter pylori SJM180 9787486 YP_003928670.1 CDS fliD NC_014560.1 776078 778135 D COG1345 Flagellar capping protein; flagellar capping protein 776078..778135 Helicobacter pylori SJM180 9787487 YP_003928671.1 CDS fliS NC_014560.1 778177 778557 D COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 778177..778557 Helicobacter pylori SJM180 9787488 YP_003928672.1 CDS HPSJM_03825 NC_014560.1 778544 778783 D hypothetical protein 778544..778783 Helicobacter pylori SJM180 9787489 YP_003928673.1 CDS HPSJM_03830 NC_014560.1 778836 779543 D COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; hypothetical protein 778836..779543 Helicobacter pylori SJM180 9787490 YP_003928674.1 CDS HPSJM_03835 NC_014560.1 779509 779655 D hypothetical protein 779509..779655 Helicobacter pylori SJM180 9787491 YP_003928675.1 CDS HPSJM_03840 NC_014560.1 779659 780537 D COG0388 Predicted amidohydrolase; putative carbon-nitrogen hydrolase 779659..780537 Helicobacter pylori SJM180 9787492 YP_003928676.1 CDS HPSJM_03845 NC_014560.1 780662 781975 D COG2056 Predicted permease; permease/na-h antiporter 780662..781975 Helicobacter pylori SJM180 9787493 YP_003928677.1 CDS HPSJM_03850 NC_014560.1 782038 783291 D COG0534 Na+-driven multidrug efflux pump; Multidrug efflux protein MatE; putative membrane protein 782038..783291 Helicobacter pylori SJM180 9787494 YP_003928678.1 CDS HPSJM_03855 NC_014560.1 783292 784815 R COG1418 Predicted HD superfamily hydrolase; phosphodiesterase complement(783292..784815) Helicobacter pylori SJM180 9787495 YP_003928679.1 CDS HPSJM_03860 NC_014560.1 784781 785428 R COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein complement(784781..785428) Helicobacter pylori SJM180 9787496 YP_003928680.1 CDS HPSJM_03865 NC_014560.1 785553 786110 D COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain; hypothetical protein 785553..786110 Helicobacter pylori SJM180 9787497 YP_003928681.1 CDS HPSJM_03870 NC_014560.1 786116 786997 D COG0552 Signal recognition particle GTPase; cell division protein (ftsY) 786116..786997 Helicobacter pylori SJM180 9787498 YP_003928682.1 CDS HPSJM_03875 NC_014560.1 787253 787567 R COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein complement(787253..787567) Helicobacter pylori SJM180 9787499 YP_003928683.1 CDS HPSJM_03880 NC_014560.1 787626 788693 R hypothetical protein complement(787626..788693) Helicobacter pylori SJM180 9787500 YP_003928684.1 CDS HPSJM_03885 NC_014560.1 788704 790197 R hypothetical protein complement(788704..790197) Helicobacter pylori SJM180 9787501 YP_003928685.1 CDS HPSJM_03890 NC_014560.1 790214 790333 D hypothetical protein 790214..790333 Helicobacter pylori SJM180 9787502 YP_003928686.1 CDS moaA NC_014560.1 790501 791466 R COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A complement(790501..791466) Helicobacter pylori SJM180 9787503 YP_003928687.1 CDS HPSJM_03900 NC_014560.1 791554 792159 D COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 791554..792159 Helicobacter pylori SJM180 9787504 YP_003928688.1 CDS flhB NC_014560.1 792152 793228 D COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 792152..793228 Helicobacter pylori SJM180 9787505 YP_003928689.1 CDS HPSJM_03910 NC_014560.1 793327 794064 R hypothetical protein complement(793327..794064) Helicobacter pylori SJM180 9787506 YP_003928690.1 CDS HPSJM_03915 NC_014560.1 794083 795399 R COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(794083..795399) Helicobacter pylori SJM180 9787507 YP_003928691.1 CDS HPSJM_03920 NC_014560.1 795406 796497 R COG2070 Dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(795406..796497) Helicobacter pylori SJM180 9787508 YP_003928692.1 CDS HPSJM_03925 NC_014560.1 796514 797722 R COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(796514..797722) Helicobacter pylori SJM180 9787509 YP_003928693.1 CDS HPSJM_03930 NC_014560.1 797746 800073 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; penta-phosphate guanosine-3'-pyrophosphohydrolase complement(797746..800073) Helicobacter pylori SJM180 9787510 YP_003928694.1 CDS HPSJM_03935 NC_014560.1 800060 800284 R COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega complement(800060..800284) Helicobacter pylori SJM180 9787511 YP_003928695.1 CDS pyrH NC_014560.1 800326 801048 R COG0528 Uridylate kinase; uridylate kinase complement(800326..801048) Helicobacter pylori SJM180 9787512 YP_003928696.1 CDS HPSJM_03945 NC_014560.1 801158 801841 R COG1427 Predicted periplasmic solute-binding protein; hypothetical protein complement(801158..801841) Helicobacter pylori SJM180 9787513 YP_003928697.1 CDS HPSJM_03950 NC_014560.1 801972 804530 D COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 801972..804530 Helicobacter pylori SJM180 9787514 YP_003928698.1 CDS HPSJM_03955 NC_014560.1 804606 804872 D hypothetical protein 804606..804872 Helicobacter pylori SJM180 9787515 YP_003928699.1 CDS HPSJM_03960 NC_014560.1 805139 806428 D hypothetical protein 805139..806428 Helicobacter pylori SJM180 9787516 YP_003928700.1 CDS HPSJM_03965 NC_014560.1 806522 807889 D outer membrane protein 806522..807889 Helicobacter pylori SJM180 9787517 YP_003928701.1 CDS HPSJM_03970 NC_014560.1 807896 808423 R hypothetical protein complement(807896..808423) Helicobacter pylori SJM180 9787518 YP_003928702.1 CDS lolA NC_014560.1 808916 809470 R COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein complement(808916..809470) Helicobacter pylori SJM180 9787519 YP_003928703.1 CDS HPSJM_03980 NC_014560.1 809616 812213 D COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 809616..812213 Helicobacter pylori SJM180 9787520 YP_003928704.1 CDS HPSJM_03985 NC_014560.1 812203 813435 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; lipoprotein release system transmembrane protein 812203..813435 Helicobacter pylori SJM180 9787521 YP_003928705.1 CDS HPSJM_03990 NC_014560.1 813717 815216 D outer membrane protein 813717..815216 Helicobacter pylori SJM180 9787522 YP_003928706.1 CDS HPSJM_03995 NC_014560.1 815483 816232 R hypothetical protein complement(815483..816232) Helicobacter pylori SJM180 9787523 YP_003928707.1 CDS HPSJM_04000 NC_014560.1 816219 817436 R COG0270 Site-specific DNA methylase; site-specific DNA methylase complement(816219..817436) Helicobacter pylori SJM180 9787524 YP_003928708.1 CDS HPSJM_04005 NC_014560.1 817471 819531 R COG2217 Cation transport ATPase; cadmium-transporting ATPase complement(817471..819531) Helicobacter pylori SJM180 9787525 YP_003928709.1 CDS HPSJM_04010 NC_014560.1 819556 821076 R COG0606 Predicted ATPase with chaperone activity; Mg chelatase-related protein; putative ComM protein complement(819556..821076) Helicobacter pylori SJM180 9787526 YP_003928710.1 CDS def NC_014560.1 821082 821606 R COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase complement(821082..821606) Helicobacter pylori SJM180 9787527 YP_003928711.1 CDS clpP NC_014560.1 821611 822198 R COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit complement(821611..822198) Helicobacter pylori SJM180 9787528 YP_003928712.1 CDS tig NC_014560.1 822219 823574 R COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor complement(822219..823574) Helicobacter pylori SJM180 9787529 YP_003928713.1 CDS HPSJM_04030 NC_014560.1 823687 824523 R outer membrane protein HorG complement(823687..824523) Helicobacter pylori SJM180 9787530 YP_003928714.1 CDS HPSJM_04035 NC_014560.1 824545 825327 R flagellar sheath adhesin complement(824545..825327) Helicobacter pylori SJM180 9787531 YP_003928715.1 CDS moaC NC_014560.1 825446 825922 R COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC complement(825446..825922) Helicobacter pylori SJM180 9787532 YP_003928716.1 CDS mogA NC_014560.1 825932 826462 R COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA complement(825932..826462) Helicobacter pylori SJM180 9787533 YP_003928717.1 CDS HPSJM_04050 NC_014560.1 826475 826912 R COG0314 Molybdopterin converting factor, large subunit; molybdopterin converting factor, subunit 2 complement(826475..826912) Helicobacter pylori SJM180 9787534 YP_003928718.1 CDS HPSJM_04055 NC_014560.1 826913 827134 R COG1977 Molybdopterin converting factor, small subunit; putative molybdopterin converting factor, subunit 1 complement(826913..827134) Helicobacter pylori SJM180 9787535 YP_003928719.1 CDS ribA NC_014560.1 827209 827787 R COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II complement(827209..827787) Helicobacter pylori SJM180 9787536 YP_003928720.1 CDS HPSJM_04065 NC_014560.1 827877 828716 R hypothetical protein complement(827877..828716) Helicobacter pylori SJM180 9787537 YP_003928721.1 CDS HPSJM_04070 NC_014560.1 828803 829837 R COG0108 3, 4-dihydroxy-2-butanone 4-phosphate synthase; bifunctional 3, 4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(828803..829837) Helicobacter pylori SJM180 9787538 YP_003928722.1 CDS HPSJM_04075 NC_014560.1 829895 830011 D hypothetical protein 829895..830011 Helicobacter pylori SJM180 9787539 YP_003928723.1 CDS HPSJM_04080 NC_014560.1 830008 830862 R COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein complement(830008..830862) Helicobacter pylori SJM180 9787540 YP_003928724.1 CDS HPSJM_04085 NC_014560.1 830944 831564 D COG1451 Predicted metal-dependent hydrolase; putative hydrolase 830944..831564 Helicobacter pylori SJM180 9787541 YP_003928725.1 CDS HPSJM_04090 NC_014560.1 831575 833953 R COG4771 Outer membrane receptor for ferrienterochelin and colicins; iron (III) dicitrate transport protein complement(831575..833953) Helicobacter pylori SJM180 9787542 YP_003928726.1 CDS acpS NC_014560.1 834162 834521 R COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase complement(834162..834521) Helicobacter pylori SJM180 9787543 YP_003928727.1 CDS fliL NC_014560.1 834528 835079 R COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL complement(834528..835079) Helicobacter pylori SJM180 9787544 YP_003928728.1 CDS HPSJM_04105 NC_014560.1 835088 835690 R COG0742 N6-adenine-specific methylase; hypothetical protein complement(835088..835690) Helicobacter pylori SJM180 9787545 YP_003928729.1 CDS HPSJM_04110 NC_014560.1 835669 835995 R hypothetical protein complement(835669..835995) Helicobacter pylori SJM180 9787546 YP_003928730.1 CDS HPSJM_04115 NC_014560.1 836430 837437 R COG1565 Uncharacterized conserved protein; hypothetical protein complement(836430..837437) Helicobacter pylori SJM180 9787547 YP_003928731.1 CDS HPSJM_04120 NC_014560.1 837569 838186 D COG0491 Zn-dependent hydrolases, including glyoxylases; hypothetical protein 837569..838186 Helicobacter pylori SJM180 9787548 YP_003928732.1 CDS HPSJM_04125 NC_014560.1 838187 838954 D COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamin biosynthesis protein (thiF) 838187..838954 Helicobacter pylori SJM180 9787549 YP_003928733.1 CDS HPSJM_04130 NC_014560.1 838970 839743 D COG1291 Flagellar motor component; flagellar motor protein MotA 838970..839743 Helicobacter pylori SJM180 9787550 YP_003928734.1 CDS motB NC_014560.1 839746 840519 D COG1360 Flagellar motor protein; flagellar motor protein MotB 839746..840519 Helicobacter pylori SJM180 9787551 YP_003928735.1 CDS HPSJM_04140 NC_014560.1 840525 840962 D hypothetical protein 840525..840962 Helicobacter pylori SJM180 9787552 YP_003928736.1 CDS HPSJM_04145 NC_014560.1 841076 842737 D COG1174 ABC-type proline/glycine betaine transport systems, permease component; osmoprotection protein (proWX) 841076..842737 Helicobacter pylori SJM180 9787553 YP_003928737.1 CDS HPSJM_04150 NC_014560.1 842741 843391 D COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; osmoprotection ATP-binding protein 842741..843391 Helicobacter pylori SJM180 9787554 YP_003928738.1 CDS HPSJM_04155 NC_014560.1 843565 844026 D COG0018 Arginyl-tRNA synthetase; hypothetical protein 843565..844026 Helicobacter pylori SJM180 9787555 YP_003928739.1 CDS uvrC NC_014560.1 844027 845811 D COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 844027..845811 Helicobacter pylori SJM180 9787556 YP_003928740.1 CDS HPSJM_04165 NC_014560.1 845822 847087 D COG0460 Homoserine dehydrogenase; homoserine dehydrogenase 845822..847087 Helicobacter pylori SJM180 9787557 YP_003928741.1 CDS HPSJM_04170 NC_014560.1 847087 847431 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 847087..847431 Helicobacter pylori SJM180 9787558 YP_003928742.1 CDS HPSJM_04175 NC_014560.1 847520 847840 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 847520..847840 Helicobacter pylori SJM180 9787559 YP_003928743.1 CDS HPSJM_04180 NC_014560.1 847846 848781 D COG0492 Thioredoxin reductase; thioredoxin reductase 847846..848781 Helicobacter pylori SJM180 9787560 YP_003928744.1 CDS HPSJM_04185 NC_014560.1 848825 848965 R hypothetical protein complement(848825..848965) Helicobacter pylori SJM180 9787561 YP_003928745.1 CDS HPSJM_04190 NC_014560.1 848980 849099 D hypothetical protein 848980..849099 Helicobacter pylori SJM180 9787562 YP_003928746.1 CDS HPSJM_04195 NC_014560.1 849139 849960 D COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B) 849139..849960 Helicobacter pylori SJM180 9787563 YP_003928747.1 CDS HPSJM_04200 NC_014560.1 850176 850424 R COG0724 RNA-binding proteins (RRM domain); Nucleotide binding protein complement(850176..850424) Helicobacter pylori SJM180 9787564 YP_003928748.1 CDS HPSJM_04205 NC_014560.1 850750 851430 R COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A complement(850750..851430) Helicobacter pylori SJM180 9787565 YP_003928749.1 CDS HPSJM_04210 NC_014560.1 851552 852997 R COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase complement(851552..852997) Helicobacter pylori SJM180 9787566 YP_003928750.1 CDS gatA NC_014560.1 853007 854368 R COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(853007..854368) Helicobacter pylori SJM180 9787567 YP_003928751.1 CDS coaE NC_014560.1 854427 855017 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(854427..855017) Helicobacter pylori SJM180 9787568 YP_003928752.1 CDS speE NC_014560.1 855019 855807 R COG0421 Spermidine synthase; spermidine synthase complement(855019..855807) Helicobacter pylori SJM180 9787569 YP_003928753.1 CDS HPSJM_04230 NC_014560.1 855892 856779 R hypothetical protein complement(855892..856779) Helicobacter pylori SJM180 9787570 YP_003928754.1 CDS engA NC_014560.1 856856 858244 D COG1160 Predicted GTPases; GTP-binding protein EngA 856856..858244 Helicobacter pylori SJM180 9787571 YP_003928755.1 CDS HPSJM_04240 NC_014560.1 858384 858668 D COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 858384..858668 Helicobacter pylori SJM180 9787572 YP_003928756.1 CDS HPSJM_04250 NC_014560.1 858908 859027 R hypothetical protein complement(858908..859027) Helicobacter pylori SJM180 9787574 YP_003928757.1 CDS HPSJM_04255 NC_014560.1 859167 859259 R hypothetical protein complement(859167..859259) Helicobacter pylori SJM180 9787575 YP_003928758.1 CDS HPSJM_04260 NC_014560.1 859381 859986 D COG3018 Uncharacterized protein conserved in bacteria; hypothetical protein 859381..859986 Helicobacter pylori SJM180 9787576 YP_003928759.1 CDS HPSJM_04265 NC_014560.1 860005 860622 D hypothetical protein 860005..860622 Helicobacter pylori SJM180 9787577 YP_003928760.1 CDS HPSJM_04270 NC_014560.1 860619 862382 D COG2067 Long-chain fatty acid transport protein; putative Outer membrane protein 860619..862382 Helicobacter pylori SJM180 9787578 YP_003928761.1 CDS HPSJM_04275 NC_014560.1 862386 863387 D COG1086 Predicted nucleoside-diphosphate sugar epimerases; UDP-GlcNAc C6 dehydratase/C5 epimerase 862386..863387 Helicobacter pylori SJM180 9787579 YP_003928762.1 CDS HPSJM_04280 NC_014560.1 863384 864661 D COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 863384..864661 Helicobacter pylori SJM180 9787580 YP_003928763.1 CDS HPSJM_04285 NC_014560.1 864661 865398 D hypothetical protein 864661..865398 Helicobacter pylori SJM180 9787581 YP_003928764.1 CDS thiE NC_014560.1 865423 866082 R COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(865423..866082) Helicobacter pylori SJM180 9787582 YP_003928765.1 CDS HPSJM_04295 NC_014560.1 866075 866884 R COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; thiamine biosynthesis protein (thi) complement(866075..866884) Helicobacter pylori SJM180 9787583 YP_003928766.1 CDS HPSJM_04300 NC_014560.1 866881 867660 R COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase complement(866881..867660) Helicobacter pylori SJM180 9787584 YP_003928767.1 CDS HPSJM_04305 NC_014560.1 867752 870751 R COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein complement(867752..870751) Helicobacter pylori SJM180 9787585 YP_003928768.1 CDS HPSJM_04310 NC_014560.1 870923 871534 R COG0732 Restriction endonuclease S subunits; anti-codon nuclease masking agent (prrB) complement(870923..871534) Helicobacter pylori SJM180 9787586 YP_003928769.1 CDS HPSJM_04325 NC_014560.1 873297 873983 D COG0671 Membrane-associated phospholipid phosphatase; integral membrane protein 873297..873983 Helicobacter pylori SJM180 9787587 YP_003928770.1 CDS HPSJM_04330 NC_014560.1 874006 874962 R COG2958 Uncharacterized protein conserved in bacteria; Excinuclease ATPase subunit complement(874006..874962) Helicobacter pylori SJM180 9787588 YP_003928771.1 CDS HPSJM_04335 NC_014560.1 874959 876560 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein complement(874959..876560) Helicobacter pylori SJM180 9787589 YP_003928772.1 CDS HPSJM_04340 NC_014560.1 876763 877740 D COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 876763..877740 Helicobacter pylori SJM180 9787590 YP_003928773.1 CDS HPSJM_04345 NC_014560.1 877795 877932 R hypothetical protein complement(877795..877932) Helicobacter pylori SJM180 9787591 YP_003928774.1 CDS HPSJM_04350 NC_014560.1 877904 878482 R COG0279 Phosphoheptose isomerase; phosphoheptose isomerase complement(877904..878482) Helicobacter pylori SJM180 9787592 YP_003928775.1 CDS HPSJM_04355 NC_014560.1 878475 879866 R COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; ADP-heptose synthase complement(878475..879866) Helicobacter pylori SJM180 9787593 YP_003928776.1 CDS HPSJM_04360 NC_014560.1 879863 880855 R COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-glyceromanno-heptose 6-epimerase complement(879863..880855) Helicobacter pylori SJM180 9787594 YP_003928777.1 CDS HPSJM_04365 NC_014560.1 880864 881388 R COG0241 Histidinol phosphatase and related phosphatases; hypothetical protein complement(880864..881388) Helicobacter pylori SJM180 9787595 YP_003928778.1 CDS HPSJM_04370 NC_014560.1 881375 882133 R COG2836 Uncharacterized conserved protein; hypothetical protein complement(881375..882133) Helicobacter pylori SJM180 9787596 YP_003928779.1 CDS HPSJM_04375 NC_014560.1 882124 882795 R COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor; pantothenate kinase complement(882124..882795) Helicobacter pylori SJM180 9787597 YP_003928780.1 CDS HPSJM_04380 NC_014560.1 882800 884425 R hypothetical protein complement(882800..884425) Helicobacter pylori SJM180 9787598 YP_003928781.1 CDS HPSJM_04385 NC_014560.1 884430 885086 R hypothetical protein complement(884430..885086) Helicobacter pylori SJM180 9787599 YP_003928782.1 CDS dut NC_014560.1 885083 885520 R COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(885083..885520) Helicobacter pylori SJM180 9787600 YP_003928783.1 CDS greA NC_014560.1 885510 886004 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(885510..886004) Helicobacter pylori SJM180 9787601 YP_003928784.1 CDS HPSJM_04400 NC_014560.1 886045 887127 R COG0763 Lipid A disaccharide synthetase; ipid-A-disaccharide synthase complement(886045..887127) Helicobacter pylori SJM180 9787602 YP_003928785.1 CDS HPSJM_04405 NC_014560.1 887127 887588 R hypothetical protein complement(887127..887588) Helicobacter pylori SJM180 9787603 YP_003928786.1 CDS hypA NC_014560.1 887595 887948 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein complement(887595..887948) Helicobacter pylori SJM180 9787604 YP_003928787.1 CDS flgE NC_014560.1 888007 890163 R COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE complement(888007..890163) Helicobacter pylori SJM180 9787605 YP_003928788.1 CDS HPSJM_04420 NC_014560.1 890376 891110 R COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase complement(890376..891110) Helicobacter pylori SJM180 9787606 YP_003928789.1 CDS HPSJM_04425 NC_014560.1 891462 891791 D COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; alkylphosphonate uptake protein 891462..891791 Helicobacter pylori SJM180 9787607 YP_003928790.1 CDS HPSJM_04430 NC_014560.1 891843 892058 R hypothetical protein complement(891843..892058) Helicobacter pylori SJM180 9787608 YP_003928791.1 CDS HPSJM_04435 NC_014560.1 892143 893018 R hypothetical protein complement(892143..893018) Helicobacter pylori SJM180 9787609 YP_003928792.1 CDS HPSJM_04440 NC_014560.1 893163 894680 R COG0753 Catalase; catalase complement(893163..894680) Helicobacter pylori SJM180 9787610 YP_003928793.1 CDS HPSJM_04445 NC_014560.1 895001 897376 D COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 895001..897376 Helicobacter pylori SJM180 9787611 YP_003928794.1 CDS ruvC NC_014560.1 897377 897850 R COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase complement(897377..897850) Helicobacter pylori SJM180 9787612 YP_003928795.1 CDS HPSJM_04455 NC_014560.1 897980 898711 D COG1432 Uncharacterized conserved protein; hypothetical protein 897980..898711 Helicobacter pylori SJM180 9787613 YP_003928796.1 CDS HPSJM_04460 NC_014560.1 899765 900331 R hypothetical protein complement(899765..900331) Helicobacter pylori SJM180 9787614 YP_003928797.1 CDS ruvA NC_014560.1 900566 901117 R COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA complement(900566..901117) Helicobacter pylori SJM180 9787615 YP_003928798.1 CDS HPSJM_04470 NC_014560.1 901143 902981 R hypothetical protein complement(901143..902981) Helicobacter pylori SJM180 9787616 YP_003928799.1 CDS HPSJM_04475 NC_014560.1 903074 904534 D COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor MviN 903074..904534 Helicobacter pylori SJM180 9787617 YP_003928800.1 CDS cysS NC_014560.1 904535 905932 D COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 904535..905932 Helicobacter pylori SJM180 9787618 YP_003928801.1 CDS HPSJM_04485 NC_014560.1 906219 910103 D vacuolating cytotoxin A 906219..910103 Helicobacter pylori SJM180 9787619 YP_003928802.1 CDS HPSJM_04490 NC_014560.1 910221 911231 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein complement(910221..911231) Helicobacter pylori SJM180 9787620 YP_003928803.1 CDS HPSJM_04495 NC_014560.1 911404 912171 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; IRON(III) dicitrate transport system ATP-binding protein complement(911404..912171) Helicobacter pylori SJM180 9787621 YP_003928804.1 CDS HPSJM_04500 NC_014560.1 912171 913151 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; ABC-type transport system, permease; Iron(III) dicitrate transport system permease protein FecD; putative membrane protein complement(912171..913151) Helicobacter pylori SJM180 9787622 YP_003928805.1 CDS HPSJM_04505 NC_014560.1 913144 913998 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short-chain oxidoreductase complement(913144..913998) Helicobacter pylori SJM180 9787623 YP_003928806.1 CDS HPSJM_04510 NC_014560.1 914138 914662 D COG1607 Acyl-CoA hydrolase; acyl coenzyme A thioesterase 914138..914662 Helicobacter pylori SJM180 9787624 YP_003928807.1 CDS HPSJM_04515 NC_014560.1 915158 915400 R hypothetical protein complement(915158..915400) Helicobacter pylori SJM180 9787625 YP_003928808.1 CDS HPSJM_04520 NC_014560.1 915479 915745 R COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein complement(915479..915745) Helicobacter pylori SJM180 9787626 YP_003928809.1 CDS HPSJM_04525 NC_014560.1 915726 916103 R hypothetical protein complement(915726..916103) Helicobacter pylori SJM180 9787627 YP_003928810.1 CDS HPSJM_04530 NC_014560.1 916182 916448 R COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein complement(916182..916448) Helicobacter pylori SJM180 9787628 YP_003928811.1 CDS HPSJM_04535 NC_014560.1 916435 916803 R COG0840 Methyl-accepting chemotaxis protein; hypothetical protein complement(916435..916803) Helicobacter pylori SJM180 9787629 YP_003928812.1 CDS HPSJM_04540 NC_014560.1 916948 917085 R hypothetical protein complement(916948..917085) Helicobacter pylori SJM180 9787630 YP_003928813.1 CDS HPSJM_04545 NC_014560.1 917107 919227 R outer membrane protein (omp19) complement(917107..919227) Helicobacter pylori SJM180 9787631 YP_003928814.1 CDS HPSJM_04550 NC_014560.1 919226 919453 D hypothetical protein 919226..919453 Helicobacter pylori SJM180 9787632 YP_003928815.1 CDS HPSJM_04555 NC_014560.1 919862 920473 D hypothetical protein 919862..920473 Helicobacter pylori SJM180 9787635 YP_003928816.1 CDS HPSJM_04560 NC_014560.1 920424 921536 R COG0409 Hydrogenase maturation factor; hydrogenase expression/formation protein HypD complement(920424..921536) Helicobacter pylori SJM180 9787636 YP_003928817.1 CDS HPSJM_04565 NC_014560.1 921542 921775 R COG0298 Hydrogenase maturation factor; hydrogenase expression/formation protein complement(921542..921775) Helicobacter pylori SJM180 9787637 YP_003928818.1 CDS HPSJM_04570 NC_014560.1 921775 922503 R COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase/urease nickel incorporation protein hypB complement(921775..922503) Helicobacter pylori SJM180 9787638 YP_003928819.1 CDS HPSJM_04575 NC_014560.1 922615 922743 R hypothetical protein complement(922615..922743) Helicobacter pylori SJM180 9787639 YP_003928820.1 CDS HPSJM_04580 NC_014560.1 922754 923053 R COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein complement(922754..923053) Helicobacter pylori SJM180 9787640 YP_003928821.1 CDS HPSJM_04585 NC_014560.1 923151 923507 R COG0282 Acetate kinase; acetate kinase complement(923151..923507) Helicobacter pylori SJM180 9787641 YP_003928822.1 CDS HPSJM_04590 NC_014560.1 923537 924358 R COG0282 Acetate kinase; acetate kinase complement(923537..924358) Helicobacter pylori SJM180 9787642 YP_003928823.1 CDS HPSJM_04615 NC_014560.1 926151 926300 R hypothetical protein complement(926151..926300) Helicobacter pylori SJM180 9787643 YP_003928824.1 CDS HPSJM_04620 NC_014560.1 926294 927847 D hypothetical protein 926294..927847 Helicobacter pylori SJM180 9787644 YP_003928825.1 CDS flgD NC_014560.1 927898 928938 D COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 927898..928938 Helicobacter pylori SJM180 9787645 YP_003928826.1 CDS flgE NC_014560.1 928935 930752 D COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 928935..930752 Helicobacter pylori SJM180 9787646 YP_003928827.1 CDS HPSJM_04635 NC_014560.1 930804 931439 D putative restriction endonuclease 930804..931439 Helicobacter pylori SJM180 9787647 YP_003928828.1 CDS HPSJM_04640 NC_014560.1 931408 932553 D COG0827 Adenine-specific DNA methylase; type II DNA modification (methyltransferase) 931408..932553 Helicobacter pylori SJM180 9787648 YP_003928829.1 CDS HPSJM_04645 NC_014560.1 932562 934589 D COG0210 Superfamily I DNA and RNA helicases; rep helicase, single-stranded DNA-dependent ATPase (rep) 932562..934589 Helicobacter pylori SJM180 9787649 YP_003928830.1 CDS HPSJM_04650 NC_014560.1 935188 935289 D hypothetical protein 935188..935289 Helicobacter pylori SJM180 9787650 YP_003928831.1 CDS HPSJM_04655 NC_014560.1 935414 936961 D outer membrane protein HopC 935414..936961 Helicobacter pylori SJM180 9787651 YP_003928832.1 CDS HPSJM_04660 NC_014560.1 936983 938584 D outer membrane protein HopB 936983..938584 Helicobacter pylori SJM180 9787652 YP_003928833.1 CDS HPSJM_04665 NC_014560.1 939486 941030 R COG1190 Lysyl-tRNA synthetase (class II); outer membrane protein HopG complement(939486..941030) Helicobacter pylori SJM180 9787653 YP_003928834.1 CDS HPSJM_04670 NC_014560.1 941277 943724 R COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein complement(941277..943724) Helicobacter pylori SJM180 9787654 YP_003928835.1 CDS HPSJM_04675 NC_014560.1 943908 944339 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(943908..944339) Helicobacter pylori SJM180 9787655 YP_003928836.1 CDS carB NC_014560.1 944344 947601 R COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit complement(944344..947601) Helicobacter pylori SJM180 9787656 YP_003928837.1 CDS HPSJM_04685 NC_014560.1 947700 948392 R COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein complement(947700..948392) Helicobacter pylori SJM180 9787657 YP_003928838.1 CDS HPSJM_04690 NC_014560.1 948538 949536 D COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 948538..949536 Helicobacter pylori SJM180 9787658 YP_003928839.1 CDS HPSJM_04695 NC_014560.1 949616 956836 D vacuolating cytotoxin VacA-like protein 949616..956836 Helicobacter pylori SJM180 9787659 YP_003928840.1 CDS HPSJM_04700 NC_014560.1 956889 957998 D outer membrane protein HopK 956889..957998 Helicobacter pylori SJM180 9787660 YP_003928841.1 CDS HPSJM_04705 NC_014560.1 958065 958271 R COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase complement(958065..958271) Helicobacter pylori SJM180 9787661 YP_003928842.1 CDS recR NC_014560.1 958419 959000 D COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 958419..959000 Helicobacter pylori SJM180 9787662 YP_003928843.1 CDS truD NC_014560.1 958997 960142 D COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 958997..960142 Helicobacter pylori SJM180 9787663 YP_003928844.1 CDS HPSJM_04720 NC_014560.1 960129 961061 D COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 960129..961061 Helicobacter pylori SJM180 9787664 YP_003928845.1 CDS folE NC_014560.1 961062 961604 D COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 961062..961604 Helicobacter pylori SJM180 9787665 YP_003928846.1 CDS HPSJM_04730 NC_014560.1 961620 962531 D COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 961620..962531 Helicobacter pylori SJM180 9787666 YP_003928847.1 CDS surE NC_014560.1 962528 963331 D COG0496 Predicted acid phosphatase; stationary phase survival protein SurE 962528..963331 Helicobacter pylori SJM180 9787667 YP_003928848.1 CDS HPSJM_04740 NC_014560.1 963328 963987 D hypothetical protein 963328..963987 Helicobacter pylori SJM180 9787668 YP_003928849.1 CDS HPSJM_04745 NC_014560.1 963989 964591 D COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 963989..964591 Helicobacter pylori SJM180 9787669 YP_003928850.1 CDS HPSJM_04750 NC_014560.1 964588 965343 D COG0602 Organic radical activating enzymes; hypothetical protein 964588..965343 Helicobacter pylori SJM180 9787670 YP_003928851.1 CDS HPSJM_04755 NC_014560.1 965428 965913 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 965428..965913 Helicobacter pylori SJM180 9787671 YP_003928852.1 CDS HPSJM_04760 NC_014560.1 966131 968116 D putative outer membrane protein HomB 966131..968116 Helicobacter pylori SJM180 9787672 YP_003928853.1 CDS HPSJM_04765 NC_014560.1 968540 969673 R COG0477 Permeases of the major facilitator superfamily; proline and betaine transporter complement(968540..969673) Helicobacter pylori SJM180 9787673 YP_003928854.1 CDS HPSJM_04770 NC_014560.1 970175 971512 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(970175..971512) Helicobacter pylori SJM180 9787674 YP_003928855.1 CDS HPSJM_04785 NC_014560.1 971941 972663 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter, permease protein complement(971941..972663) Helicobacter pylori SJM180 9787675 YP_003928856.1 CDS HPSJM_04790 NC_014560.1 972638 973414 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter complement(972638..973414) Helicobacter pylori SJM180 9787676 YP_003928857.1 CDS HPSJM_04795 NC_014560.1 973485 974618 R COG0787 Alanine racemase; alanine racemase complement(973485..974618) Helicobacter pylori SJM180 9787677 YP_003928858.1 CDS HPSJM_04800 NC_014560.1 974625 975977 R COG1115 Na+/alanine symporter; D-alanine glycine permease complement(974625..975977) Helicobacter pylori SJM180 9787678 YP_003928859.1 CDS HPSJM_04805 NC_014560.1 976018 977250 R COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase complement(976018..977250) Helicobacter pylori SJM180 9787679 YP_003928860.1 CDS HPSJM_04810 NC_014560.1 977273 977650 R COG0251 Putative translation initiation inhibitor, yjgF family; translation initiation inhibitor complement(977273..977650) Helicobacter pylori SJM180 9787680 YP_003928861.1 CDS HPSJM_04820 NC_014560.1 978581 980062 D COG1757 Na+/H+ antiporter; putative cation antiporter; putative membrane protein 978581..980062 Helicobacter pylori SJM180 9787685 YP_003928862.1 CDS HPSJM_04825 NC_014560.1 980384 980746 D hypothetical protein 980384..980746 Helicobacter pylori SJM180 9787686 YP_003928863.1 CDS HPSJM_04830 NC_014560.1 980954 981151 D hypothetical protein 980954..981151 Helicobacter pylori SJM180 9787687 YP_003928864.1 CDS HPSJM_04835 NC_014560.1 981327 982340 R hypothetical protein complement(981327..982340) Helicobacter pylori SJM180 9787688 YP_003928865.1 CDS HPSJM_04840 NC_014560.1 982350 982802 R COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase complement(982350..982802) Helicobacter pylori SJM180 9787689 YP_003928866.1 CDS HPSJM_04845 NC_014560.1 982816 983685 R COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta complement(982816..983685) Helicobacter pylori SJM180 9787690 YP_003928867.1 CDS HPSJM_04850 NC_014560.1 983766 984380 D COG0540 Aspartate carbamoyltransferase, catalytic chain; putative recombination protein RecO 983766..984380 Helicobacter pylori SJM180 9787691 YP_003928868.1 CDS HPSJM_04855 NC_014560.1 984391 985047 D COG1546 Uncharacterized protein (competence- and mitomycin-induced); putative competence/damage-inducible protein CinA 984391..985047 Helicobacter pylori SJM180 9787692 YP_003928869.1 CDS HPSJM_04860 NC_014560.1 985050 985616 R hypothetical protein complement(985050..985616) Helicobacter pylori SJM180 9787693 YP_003928870.1 CDS HPSJM_04865 NC_014560.1 985681 986313 R COG0778 Nitroreductase; oxygen-insensitive NADPH nitroreductase complement(985681..986313) Helicobacter pylori SJM180 9787694 YP_003928871.1 CDS HPSJM_04870 NC_014560.1 986324 987163 R COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(986324..987163) Helicobacter pylori SJM180 9787695 YP_003928872.1 CDS HPSJM_04875 NC_014560.1 987173 987901 R COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein complement(987173..987901) Helicobacter pylori SJM180 9787696 YP_003928873.1 CDS HPSJM_04880 NC_014560.1 987919 989100 R COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(987919..989100) Helicobacter pylori SJM180 9787697 YP_003928874.1 CDS HPSJM_04885 NC_014560.1 989101 989865 R COG1579 Zn-ribbon protein, possibly nucleic acid-binding; hypothetical protein complement(989101..989865) Helicobacter pylori SJM180 9787698 YP_003928875.1 CDS HPSJM_04890 NC_014560.1 989875 990606 R COG0327 Uncharacterized conserved protein; hypothetical protein complement(989875..990606) Helicobacter pylori SJM180 9787699 YP_003928876.1 CDS glyQ NC_014560.1 990608 991504 R COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha complement(990608..991504) Helicobacter pylori SJM180 9787700 YP_003928877.1 CDS gpsA NC_014560.1 991518 992456 R COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(991518..992456) Helicobacter pylori SJM180 9787701 YP_003928878.1 CDS HPSJM_04940 NC_014560.1 998718 998843 R hypothetical protein complement(998718..998843) Helicobacter pylori SJM180 9787702 YP_003928879.1 CDS HPSJM_04945 NC_014560.1 998866 999147 R hypothetical protein complement(998866..999147) Helicobacter pylori SJM180 9787703 YP_003928880.1 CDS HPSJM_04950 NC_014560.1 999158 1002217 R COG3696 Putative silver efflux pump; cobalt-zinc-cadmium resistance protein complement(999158..1002217) Helicobacter pylori SJM180 9787704 YP_003928881.1 CDS HPSJM_04955 NC_014560.1 1002217 1003296 R COG0845 Membrane-fusion protein; cobalt-zinc-cadmium resistance protein complement(1002217..1003296) Helicobacter pylori SJM180 9787705 YP_003928882.1 CDS HPSJM_04960 NC_014560.1 1003293 1004600 R hypothetical protein complement(1003293..1004600) Helicobacter pylori SJM180 9787706 YP_003928883.1 CDS glyS NC_014560.1 1004590 1006692 R COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(1004590..1006692) Helicobacter pylori SJM180 9787707 YP_003928884.1 CDS HPSJM_04970 NC_014560.1 1006827 1006970 R hypothetical protein complement(1006827..1006970) Helicobacter pylori SJM180 9787708 YP_003928885.1 CDS HPSJM_04975 NC_014560.1 1007874 1009349 D COG0696 Phosphoglyceromutase; phosphoglyceromutase 1007874..1009349 Helicobacter pylori SJM180 9787709 YP_003928886.1 CDS gatC NC_014560.1 1009364 1009645 D COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA amidotransferase subunit C 1009364..1009645 Helicobacter pylori SJM180 9787710 YP_003928887.1 CDS HPSJM_04985 NC_014560.1 1009779 1011089 R COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine--8-amino-7-oxononanoate transaminase complement(1009779..1011089) Helicobacter pylori SJM180 9787711 YP_003928888.1 CDS HPSJM_04990 NC_014560.1 1011219 1012682 D COG0760 Parvulin-like peptidyl-prolyl isomerase; putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D) 1011219..1012682 Helicobacter pylori SJM180 9787712 YP_003928889.1 CDS HPSJM_04995 NC_014560.1 1012698 1014179 D COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 1012698..1014179 Helicobacter pylori SJM180 9787713 YP_003928890.1 CDS HPSJM_05000 NC_014560.1 1014310 1015467 D COG0206 Cell division GTPase; cell division protein FtsZ 1014310..1015467 Helicobacter pylori SJM180 9787714 YP_003928891.1 CDS HPSJM_05005 NC_014560.1 1015840 1016298 R hypothetical protein complement(1015840..1016298) Helicobacter pylori SJM180 9787715 YP_003928892.1 CDS HPSJM_05010 NC_014560.1 1016388 1016627 R hypothetical protein complement(1016388..1016627) Helicobacter pylori SJM180 9787716 YP_003928893.1 CDS HPSJM_05015 NC_014560.1 1016609 1017142 R hypothetical protein complement(1016609..1017142) Helicobacter pylori SJM180 9787717 YP_003928894.1 CDS HPSJM_05020 NC_014560.1 1017129 1017260 R hypothetical protein complement(1017129..1017260) Helicobacter pylori SJM180 9787718 YP_003928895.1 CDS HPSJM_05025 NC_014560.1 1017313 1018137 R COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS complement(1017313..1018137) Helicobacter pylori SJM180 9787719 YP_003928896.1 CDS HPSJM_05030 NC_014560.1 1018530 1018676 R hypothetical protein complement(1018530..1018676) Helicobacter pylori SJM180 9787720 YP_003928897.1 CDS HPSJM_05035 NC_014560.1 1018739 1018873 R hypothetical protein complement(1018739..1018873) Helicobacter pylori SJM180 9787721 YP_003928898.1 CDS HPSJM_05040 NC_014560.1 1022284 1022550 R hypothetical protein complement(1022284..1022550) Helicobacter pylori SJM180 9787724 YP_003928899.1 CDS HPSJM_05045 NC_014560.1 1023448 1025193 D COG1479 Uncharacterized conserved protein; hypothetical protein 1023448..1025193 Helicobacter pylori SJM180 9787725 YP_003928900.1 CDS HPSJM_05050 NC_014560.1 1025235 1026488 D COG0608 Single-stranded DNA-specific exonuclease; hypothetical protein 1025235..1026488 Helicobacter pylori SJM180 9787726 YP_003928901.1 CDS HPSJM_05065 NC_014560.1 1028376 1028471 D hypothetical protein 1028376..1028471 Helicobacter pylori SJM180 9787727 YP_003928902.1 CDS HPSJM_05070 NC_014560.1 1028507 1029433 D hypothetical protein 1028507..1029433 Helicobacter pylori SJM180 9787728 YP_003928903.1 CDS HPSJM_05075 NC_014560.1 1029586 1029807 D COG1598 Uncharacterized conserved protein; hypothetical protein 1029586..1029807 Helicobacter pylori SJM180 9787729 YP_003928904.1 CDS HPSJM_05080 NC_014560.1 1029899 1029994 D hypothetical protein 1029899..1029994 Helicobacter pylori SJM180 9787730 YP_003928905.1 CDS HPSJM_05085 NC_014560.1 1030069 1031916 R COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase complement(1030069..1031916) Helicobacter pylori SJM180 9787731 YP_003928906.1 CDS HPSJM_05090 NC_014560.1 1031931 1033100 R COG0438 Glycosyltransferase; putative polysaccharide biosynthesis protein complement(1031931..1033100) Helicobacter pylori SJM180 9787732 YP_003928907.1 CDS HPSJM_05095 NC_014560.1 1033105 1033533 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein complement(1033105..1033533) Helicobacter pylori SJM180 9787733 YP_003928908.1 CDS HPSJM_05100 NC_014560.1 1033548 1034333 R COG0500 SAM-dependent methyltransferases; hypothetical protein complement(1033548..1034333) Helicobacter pylori SJM180 9787734 YP_003928909.1 CDS HPSJM_05105 NC_014560.1 1034337 1035344 R hypothetical protein complement(1034337..1035344) Helicobacter pylori SJM180 9787735 YP_003928910.1 CDS HPSJM_05110 NC_014560.1 1035345 1037297 R COG0143 Methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(1035345..1037297) Helicobacter pylori SJM180 9787736 YP_003928911.1 CDS HPSJM_05115 NC_014560.1 1037466 1038635 D COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acid synthase 1037466..1038635 Helicobacter pylori SJM180 9787737 YP_003928912.1 CDS HPSJM_05120 NC_014560.1 1038638 1040509 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(1038638..1040509) Helicobacter pylori SJM180 9787738 YP_003928913.1 CDS HPSJM_05125 NC_014560.1 1040563 1040754 D hypothetical protein 1040563..1040754 Helicobacter pylori SJM180 9787739 YP_003928914.1 CDS HPSJM_05130 NC_014560.1 1041629 1042411 R hypothetical protein complement(1041629..1042411) Helicobacter pylori SJM180 9787744 YP_003928915.1 CDS guaA NC_014560.1 1042464 1043990 R COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase complement(1042464..1043990) Helicobacter pylori SJM180 9787745 YP_003928916.1 CDS HPSJM_05140 NC_014560.1 1044001 1044489 R hypothetical protein complement(1044001..1044489) Helicobacter pylori SJM180 9787746 YP_003928917.1 CDS HPSJM_05145 NC_014560.1 1044500 1044670 R hypothetical protein complement(1044500..1044670) Helicobacter pylori SJM180 9787747 YP_003928918.1 CDS HPSJM_05150 NC_014560.1 1044660 1047050 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Biotin sulfoxide reductase; putative signal peptide complement(1044660..1047050) Helicobacter pylori SJM180 9787748 YP_003928919.1 CDS HPSJM_05155 NC_014560.1 1047154 1047744 R hypothetical protein complement(1047154..1047744) Helicobacter pylori SJM180 9787749 YP_003928920.1 CDS HPSJM_05160 NC_014560.1 1047770 1049092 R COG0520 Selenocysteine lyase; nifs-like protein complement(1047770..1049092) Helicobacter pylori SJM180 9787750 YP_003928921.1 CDS HPSJM_05165 NC_014560.1 1049111 1049425 R COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; ADP hydrolase complement(1049111..1049425) Helicobacter pylori SJM180 9787751 YP_003928922.1 CDS pheS NC_014560.1 1049507 1050493 D COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1049507..1050493 Helicobacter pylori SJM180 9787752 YP_003928923.1 CDS pheT NC_014560.1 1050493 1052787 D COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta 1050493..1052787 Helicobacter pylori SJM180 9787753 YP_003928924.1 CDS HPSJM_05180 NC_014560.1 1052802 1054091 D COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1052802..1054091 Helicobacter pylori SJM180 9787754 YP_003928925.1 CDS ispH NC_014560.1 1054081 1054905 D COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1054081..1054905 Helicobacter pylori SJM180 9787755 YP_003928926.1 CDS rpsA NC_014560.1 1055026 1056696 D COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1055026..1056696 Helicobacter pylori SJM180 9787756 YP_003928927.1 CDS HPSJM_05195 NC_014560.1 1056725 1057255 D hypothetical protein 1056725..1057255 Helicobacter pylori SJM180 9787757 YP_003928928.1 CDS HPSJM_05200 NC_014560.1 1057271 1058845 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 1057271..1058845 Helicobacter pylori SJM180 9787758 YP_003928929.1 CDS HPSJM_05205 NC_014560.1 1058855 1060705 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 1058855..1060705 Helicobacter pylori SJM180 9787759 YP_003928930.1 CDS HPSJM_05210 NC_014560.1 1060729 1061397 D COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 1060729..1061397 Helicobacter pylori SJM180 9787760 YP_003928931.1 CDS HPSJM_05215 NC_014560.1 1061399 1062157 D COG2908 Uncharacterized protein conserved in bacteria; UDP-2, 3-diacylglucosamine hydrolase 1061399..1062157 Helicobacter pylori SJM180 9787761 YP_003928932.1 CDS HPSJM_05220 NC_014560.1 1062161 1063096 D COG0835 Chemotaxis signal transduction protein; CheA-MCP interaction modulator 1062161..1063096 Helicobacter pylori SJM180 9787762 YP_003928933.1 CDS HPSJM_05225 NC_014560.1 1063153 1065573 D COG0643 Chemotaxis protein histidine kinase and related kinases; auto phosphorylating histidine kinase 1063153..1065573 Helicobacter pylori SJM180 9787763 YP_003928934.1 CDS HPSJM_05230 NC_014560.1 1065570 1066067 D COG0835 Chemotaxis signal transduction protein; purine-binding chemotaxis protein (cheW) 1065570..1066067 Helicobacter pylori SJM180 9787764 YP_003928935.1 CDS HPSJM_05235 NC_014560.1 1066329 1066829 R COG2077 Peroxiredoxin; thiol peroxidase complement(1066329..1066829) Helicobacter pylori SJM180 9787765 YP_003928936.1 CDS HPSJM_05240 NC_014560.1 1067052 1067693 D COG0605 Superoxide dismutase; superoxide dismutase 1067052..1067693 Helicobacter pylori SJM180 9787766 YP_003928937.1 CDS HPSJM_05245 NC_014560.1 1067745 1068464 D COG0500 SAM-dependent methyltransferases; hypothetical protein 1067745..1068464 Helicobacter pylori SJM180 9787767 YP_003928938.1 CDS HPSJM_05250 NC_014560.1 1068526 1070385 R COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA complement(1068526..1070385) Helicobacter pylori SJM180 9787768 YP_003928939.1 CDS HPSJM_05255 NC_014560.1 1070370 1070606 R hypothetical protein complement(1070370..1070606) Helicobacter pylori SJM180 9787769 YP_003928940.1 CDS HPSJM_05260 NC_014560.1 1070621 1070848 R COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein complement(1070621..1070848) Helicobacter pylori SJM180 9787770 YP_003928941.1 CDS HPSJM_05265 NC_014560.1 1071030 1071776 D hypothetical protein 1071030..1071776 Helicobacter pylori SJM180 9787771 YP_003928942.1 CDS HPSJM_05270 NC_014560.1 1071784 1072311 R hypothetical protein complement(1071784..1072311) Helicobacter pylori SJM180 9787772 YP_003928943.1 CDS HPSJM_05275 NC_014560.1 1072310 1072411 D hypothetical protein 1072310..1072411 Helicobacter pylori SJM180 9787773 YP_003928944.1 CDS HPSJM_05280 NC_014560.1 1072491 1073714 D COG0501 Zn-dependent protease with chaperone function; putative metalloprotease; putative membrane protein 1072491..1073714 Helicobacter pylori SJM180 9787774 YP_003928945.1 CDS HPSJM_05285 NC_014560.1 1073711 1074541 D COG2890 Methylase of polypeptide chain release factors; S-adenosylmethionine-dependent methyltransferase 1073711..1074541 Helicobacter pylori SJM180 9787775 YP_003928946.1 CDS HPSJM_05290 NC_014560.1 1074605 1075951 D COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1074605..1075951 Helicobacter pylori SJM180 9787776 YP_003928947.1 CDS HPSJM_05295 NC_014560.1 1075964 1077181 R Alpha-(1, 3)-fucosyltransferase complement(1075964..1077181) Helicobacter pylori SJM180 9787777 YP_003928948.1 CDS HPSJM_05300 NC_014560.1 1077283 1080093 R COG1333 ResB protein required for cytochrome c biosynthesis; cytochrome c-type biogenesis protein complement(1077283..1080093) Helicobacter pylori SJM180 9787778 YP_003928949.1 CDS HPSJM_05305 NC_014560.1 1080103 1080774 R COG2143 Thioredoxin-related protein; hypothetical protein complement(1080103..1080774) Helicobacter pylori SJM180 9787779 YP_003928950.1 CDS hemH NC_014560.1 1080847 1081854 R COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase complement(1080847..1081854) Helicobacter pylori SJM180 9787780 YP_003928951.1 CDS HPSJM_05315 NC_014560.1 1081910 1082341 D hypothetical protein 1081910..1082341 Helicobacter pylori SJM180 9787781 YP_003928952.1 CDS HPSJM_05320 NC_014560.1 1082342 1083022 D COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 1082342..1083022 Helicobacter pylori SJM180 9787782 YP_003928953.1 CDS HPSJM_05325 NC_014560.1 1083115 1085223 R outer membrane protein HomC complement(1083115..1085223) Helicobacter pylori SJM180 9787783 YP_003928954.1 CDS dcd NC_014560.1 1085391 1085957 R COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase complement(1085391..1085957) Helicobacter pylori SJM180 9787784 YP_003928955.1 CDS HPSJM_05335 NC_014560.1 1086087 1086572 D COG0511 Biotin carboxyl carrier protein; biotin carboxyl carrier protein 1086087..1086572 Helicobacter pylori SJM180 9787785 YP_003928956.1 CDS HPSJM_05340 NC_014560.1 1086578 1087945 D COG0439 Biotin carboxylase; biotin carboxylase 1086578..1087945 Helicobacter pylori SJM180 9787786 YP_003928957.1 CDS HPSJM_05345 NC_014560.1 1088038 1089000 D putative adenine methyltransferase 1088038..1089000 Helicobacter pylori SJM180 9787787 YP_003928958.1 CDS HPSJM_05360 NC_014560.1 1089642 1090241 D hypothetical protein 1089642..1090241 Helicobacter pylori SJM180 9787788 YP_003928959.1 CDS HPSJM_05365 NC_014560.1 1090238 1091365 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; spore coat polysaccharide biosynthesis protein C 1090238..1091365 Helicobacter pylori SJM180 9787789 YP_003928960.1 CDS nrdF NC_014560.1 1091686 1092711 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1091686..1092711 Helicobacter pylori SJM180 9787791 YP_003928961.1 CDS pcm NC_014560.1 1092721 1093350 D COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 1092721..1093350 Helicobacter pylori SJM180 9787792 YP_003928962.1 CDS HPSJM_05385 NC_014560.1 1093361 1094398 D COG0795 Predicted permeases; hypothetical protein 1093361..1094398 Helicobacter pylori SJM180 9787793 YP_003928963.1 CDS truA NC_014560.1 1094400 1095128 D COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 1094400..1095128 Helicobacter pylori SJM180 9787794 YP_003928964.1 CDS HPSJM_05395 NC_014560.1 1095122 1096156 R COG1087 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1095122..1096156) Helicobacter pylori SJM180 9787795 YP_003928965.1 CDS HPSJM_05410 NC_014560.1 1096886 1098421 D putative Outer membrane protein 1096886..1098421 Helicobacter pylori SJM180 9787798 YP_003928966.1 CDS HPSJM_05415 NC_014560.1 1098442 1099194 D COG4221 Short-chain alcohol dehydrogenase of unknown specificity; putative short chain dehydrogenase 1098442..1099194 Helicobacter pylori SJM180 9787799 YP_003928967.1 CDS HPSJM_05420 NC_014560.1 1099409 1100281 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1099409..1100281) Helicobacter pylori SJM180 9787800 YP_003928968.1 CDS HPSJM_05425 NC_014560.1 1100351 1100977 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase complement(1100351..1100977) Helicobacter pylori SJM180 9787801 YP_003928969.1 CDS HPSJM_05430 NC_014560.1 1100996 1102822 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase complement(1100996..1102822) Helicobacter pylori SJM180 9787802 YP_003928970.1 CDS HPSJM_05435 NC_014560.1 1102888 1104165 D COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1102888..1104165 Helicobacter pylori SJM180 9787803 YP_003928971.1 CDS HPSJM_05440 NC_014560.1 1104176 1104859 D COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; 6-phosphogluconolactonase 1104176..1104859 Helicobacter pylori SJM180 9787804 YP_003928972.1 CDS glk NC_014560.1 1104846 1105856 D COG0837 Glucokinase; glucokinase 1104846..1105856 Helicobacter pylori SJM180 9787805 YP_003928973.1 CDS HPSJM_05450 NC_014560.1 1106026 1107072 D COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1106026..1107072 Helicobacter pylori SJM180 9787806 YP_003928974.1 CDS HPSJM_05455 NC_014560.1 1107085 1108251 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein complement(1107085..1108251) Helicobacter pylori SJM180 9787807 YP_003928975.1 CDS HPSJM_05460 NC_014560.1 1108257 1108400 D hypothetical protein 1108257..1108400 Helicobacter pylori SJM180 9787808 YP_003928976.1 CDS HPSJM_05465 NC_014560.1 1108386 1109582 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein complement(1108386..1109582) Helicobacter pylori SJM180 9787809 YP_003928977.1 CDS HPSJM_05470 NC_014560.1 1109763 1111070 D hypothetical protein 1109763..1111070 Helicobacter pylori SJM180 9787810 YP_003928978.1 CDS HPSJM_05475 NC_014560.1 1111077 1111739 R outer membrane protein (omp23) complement(1111077..1111739) Helicobacter pylori SJM180 9787811 YP_003928979.1 CDS HPSJM_05480 NC_014560.1 1112029 1112589 D COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate flavodoxin oxidoreductase subunit gamma 1112029..1112589 Helicobacter pylori SJM180 9787812 YP_003928980.1 CDS porD NC_014560.1 1112605 1112997 D COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit; pyruvate flavodoxin oxidoreductase subunit delta 1112605..1112997 Helicobacter pylori SJM180 9787813 YP_003928981.1 CDS porA NC_014560.1 1113007 1114230 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin oxidoreductase subunit alpha 1113007..1114230 Helicobacter pylori SJM180 9787814 YP_003928982.1 CDS HPSJM_05495 NC_014560.1 1114243 1115187 D COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; pyruvate ferredoxin oxidoreductase, beta subunit 1114243..1115187 Helicobacter pylori SJM180 9787815 YP_003928983.1 CDS HPSJM_05500 NC_014560.1 1115295 1116617 D COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 1115295..1116617 Helicobacter pylori SJM180 9787816 YP_003928984.1 CDS HPSJM_05505 NC_014560.1 1116915 1117748 D putative outer membrane protein; putative signal peptide 1116915..1117748 Helicobacter pylori SJM180 9787817 YP_003928985.1 CDS HPSJM_05510 NC_014560.1 1117759 1119735 R COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B complement(1117759..1119735) Helicobacter pylori SJM180 9787818 YP_003928986.1 CDS HPSJM_05515 NC_014560.1 1119776 1120522 R hypothetical protein complement(1119776..1120522) Helicobacter pylori SJM180 9787819 YP_003928987.1 CDS HPSJM_05520 NC_014560.1 1120612 1120851 R hypothetical protein complement(1120612..1120851) Helicobacter pylori SJM180 9787820 YP_003928988.1 CDS HPSJM_05525 NC_014560.1 1120894 1123227 R hypothetical protein complement(1120894..1123227) Helicobacter pylori SJM180 9787821 YP_003928989.1 CDS HPSJM_05530 NC_014560.1 1123508 1124278 R COG0790 FOG: TPR repeat, SEL1 subfamily; cysteine-rich protein X complement(1123508..1124278) Helicobacter pylori SJM180 9787822 YP_003928990.1 CDS HPSJM_05535 NC_014560.1 1124303 1124506 R hypothetical protein complement(1124303..1124506) Helicobacter pylori SJM180 9787823 YP_003928991.1 CDS HPSJM_05540 NC_014560.1 1124522 1126225 R COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase (ggt) complement(1124522..1126225) Helicobacter pylori SJM180 9787824 YP_003928992.1 CDS flgK NC_014560.1 1126413 1128233 R COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(1126413..1128233) Helicobacter pylori SJM180 9787825 YP_003928993.1 CDS HPSJM_05550 NC_014560.1 1128235 1128669 R hypothetical protein complement(1128235..1128669) Helicobacter pylori SJM180 9787826 YP_003928994.1 CDS HPSJM_05555 NC_014560.1 1128801 1129757 R COG0270 Site-specific DNA methylase; type II DNA modification enzyme complement(1128801..1129757) Helicobacter pylori SJM180 9787827 YP_003928995.1 CDS HPSJM_05560 NC_014560.1 1129899 1130102 R hypothetical protein complement(1129899..1130102) Helicobacter pylori SJM180 9787828 YP_003928996.1 CDS HPSJM_05565 NC_014560.1 1130166 1130372 R hypothetical protein complement(1130166..1130372) Helicobacter pylori SJM180 9787829 YP_003928997.1 CDS HPSJM_05570 NC_014560.1 1130407 1130964 R COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase slyD complement(1130407..1130964) Helicobacter pylori SJM180 9787830 YP_003928998.1 CDS HPSJM_05575 NC_014560.1 1130951 1131946 R hypothetical protein complement(1130951..1131946) Helicobacter pylori SJM180 9787831 YP_003928999.1 CDS HPSJM_05580 NC_014560.1 1131954 1132493 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein precursor complement(1131954..1132493) Helicobacter pylori SJM180 9787832 YP_003929000.1 CDS tolB NC_014560.1 1132560 1133813 R COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB complement(1132560..1133813) Helicobacter pylori SJM180 9787833 YP_003929001.1 CDS HPSJM_05590 NC_014560.1 1133810 1134604 R hypothetical protein complement(1133810..1134604) Helicobacter pylori SJM180 9787834 YP_003929002.1 CDS HPSJM_05595 NC_014560.1 1134623 1135024 R COG0848 Biopolymer transport protein; Biopolymer transport protein ExbD/TolR complement(1134623..1135024) Helicobacter pylori SJM180 9787835 YP_003929003.1 CDS HPSJM_05600 NC_014560.1 1135077 1135646 R COG0811 Biopolymer transport proteins; biopolymer transport protein complement(1135077..1135646) Helicobacter pylori SJM180 9787836 YP_003929004.1 CDS atpC NC_014560.1 1135657 1136028 R COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon complement(1135657..1136028) Helicobacter pylori SJM180 9787837 YP_003929005.1 CDS HPSJM_05610 NC_014560.1 1136039 1137448 R COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta complement(1136039..1137448) Helicobacter pylori SJM180 9787838 YP_003929006.1 CDS HPSJM_05615 NC_014560.1 1137472 1138377 R COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma complement(1137472..1138377) Helicobacter pylori SJM180 9787839 YP_003929007.1 CDS HPSJM_05620 NC_014560.1 1138392 1139903 R COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha complement(1138392..1139903) Helicobacter pylori SJM180 9787840 YP_003929008.1 CDS HPSJM_05625 NC_014560.1 1139926 1140468 R COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); F0F1 ATP synthase subunit delta complement(1139926..1140468) Helicobacter pylori SJM180 9787841 YP_003929009.1 CDS HPSJM_05630 NC_014560.1 1140469 1140984 R F0F1 ATP synthase subunit B complement(1140469..1140984) Helicobacter pylori SJM180 9787842 YP_003929010.1 CDS HPSJM_05635 NC_014560.1 1140988 1141422 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B' complement(1140988..1141422) Helicobacter pylori SJM180 9787843 YP_003929011.1 CDS HPSJM_05640 NC_014560.1 1141527 1142399 R COG1475 Predicted transcriptional regulators; plasmid replication-partition related protein complement(1141527..1142399) Helicobacter pylori SJM180 9787844 YP_003929012.1 CDS HPSJM_05645 NC_014560.1 1142403 1143197 R COG1192 ATPases involved in chromosome partitioning; chromosome partitioning protein complement(1142403..1143197) Helicobacter pylori SJM180 9787845 YP_003929013.1 CDS HPSJM_05650 NC_014560.1 1143200 1143838 R COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase complement(1143200..1143838) Helicobacter pylori SJM180 9787846 YP_003929014.1 CDS fmt NC_014560.1 1143835 1144746 R COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1143835..1144746) Helicobacter pylori SJM180 9787847 YP_003929015.1 CDS HPSJM_05660 NC_014560.1 1144758 1147343 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ATPase complement(1144758..1147343) Helicobacter pylori SJM180 9787848 YP_003929016.1 CDS HPSJM_05665 NC_014560.1 1147382 1148683 R COG4487 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1147382..1148683) Helicobacter pylori SJM180 9787849 YP_003929017.1 CDS HPSJM_05670 NC_014560.1 1148852 1149001 D hypothetical protein 1148852..1149001 Helicobacter pylori SJM180 9787850 YP_003929018.1 CDS HPSJM_05675 NC_014560.1 1149397 1149558 D hypothetical protein 1149397..1149558 Helicobacter pylori SJM180 9787851 YP_003929019.1 CDS HPSJM_05680 NC_014560.1 1151812 1151922 R hypothetical protein complement(1151812..1151922) Helicobacter pylori SJM180 9787853 YP_003929020.1 CDS HPSJM_05695 NC_014560.1 1153142 1153285 D hypothetical protein 1153142..1153285 Helicobacter pylori SJM180 9787854 YP_003929021.1 CDS rplS NC_014560.1 1153469 1153825 R COG0335 Ribosomal protein L19; 50S ribosomal protein L19 complement(1153469..1153825) Helicobacter pylori SJM180 9787855 YP_003929022.1 CDS trmD NC_014560.1 1153847 1154536 R COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase complement(1153847..1154536) Helicobacter pylori SJM180 9787856 YP_003929023.1 CDS rimM NC_014560.1 1154537 1155091 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(1154537..1155091) Helicobacter pylori SJM180 9787857 YP_003929024.1 CDS HPSJM_05715 NC_014560.1 1155092 1155439 R COG1837 Predicted RNA-binding protein (contains KH domain); hypothetical protein complement(1155092..1155439) Helicobacter pylori SJM180 9787858 YP_003929025.1 CDS rpsP NC_014560.1 1155456 1155686 R COG0228 Ribosomal protein S16; 30S ribosomal protein S16 complement(1155456..1155686) Helicobacter pylori SJM180 9787859 YP_003929026.1 CDS HPSJM_05725 NC_014560.1 1155760 1157106 R COG0541 Signal recognition particle GTPase; signal recognition particle protein complement(1155760..1157106) Helicobacter pylori SJM180 9787860 YP_003929027.1 CDS valS NC_014560.1 1157121 1159739 R COG0525 Valyl-tRNA synthetase; valyl-tRNA synthetase complement(1157121..1159739) Helicobacter pylori SJM180 9787861 YP_003929028.1 CDS HPSJM_05735 NC_014560.1 1159877 1160284 D COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1159877..1160284 Helicobacter pylori SJM180 9787862 YP_003929029.1 CDS murG NC_014560.1 1160296 1161357 D COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1160296..1161357 Helicobacter pylori SJM180 9787863 YP_003929030.1 CDS HPSJM_05745 NC_014560.1 1161466 1163556 D outer membrane protein HopI 1161466..1163556 Helicobacter pylori SJM180 9787864 YP_003929031.1 CDS HPSJM_05750 NC_014560.1 1163579 1167292 D outer membrane protein HopL 1163579..1167292 Helicobacter pylori SJM180 9787865 YP_003929032.1 CDS HPSJM_05755 NC_014560.1 1167305 1168078 D COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1167305..1168078 Helicobacter pylori SJM180 9787866 YP_003929033.1 CDS HPSJM_05760 NC_014560.1 1168105 1168638 D COG2184 Protein involved in cell division; cell filamentation protein 1168105..1168638 Helicobacter pylori SJM180 9787867 YP_003929034.1 CDS HPSJM_05765 NC_014560.1 1168883 1169305 R COG0319 Predicted metal-dependent hydrolase; putative metalloprotease complement(1168883..1169305) Helicobacter pylori SJM180 9787868 YP_003929035.1 CDS HPSJM_05770 NC_014560.1 1169361 1169855 R COG0716 Flavodoxins; flavodoxin FldA complement(1169361..1169855) Helicobacter pylori SJM180 9787869 YP_003929036.1 CDS HPSJM_05775 NC_014560.1 1169946 1170527 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(1169946..1170527) Helicobacter pylori SJM180 9787870 YP_003929037.1 CDS HPSJM_05780 NC_014560.1 1170650 1170847 D COG3197 Uncharacterized protein, possibly involved in nitrogen fixation; cation transport subunit forcbb3-type oxidase 1170650..1170847 Helicobacter pylori SJM180 9787871 YP_003929038.1 CDS HPSJM_05785 NC_014560.1 1170875 1171849 D COG0492 Thioredoxin reductase; thioredoxin reductase 1170875..1171849 Helicobacter pylori SJM180 9787872 YP_003929039.1 CDS HPSJM_05790 NC_014560.1 1171857 1173017 R COG0477 Permeases of the major facilitator superfamily; tetracycline resistance proteintet A (P ) complement(1171857..1173017) Helicobacter pylori SJM180 9787873 YP_003929040.1 CDS pgi NC_014560.1 1173081 1174718 D COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1173081..1174718 Helicobacter pylori SJM180 9787874 YP_003929041.1 CDS HPSJM_05800 NC_014560.1 1175026 1176441 D Outer membrane protein HofH; putative signal peptide 1175026..1176441 Helicobacter pylori SJM180 9787875 YP_003929042.1 CDS HPSJM_05805 NC_014560.1 1176747 1176851 D hypothetical protein 1176747..1176851 Helicobacter pylori SJM180 9787876 YP_003929043.1 CDS HPSJM_05810 NC_014560.1 1176960 1179023 R COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein complement(1176960..1179023) Helicobacter pylori SJM180 9787877 YP_003929044.1 CDS HPSJM_05815 NC_014560.1 1179234 1179887 D COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein 1179234..1179887 Helicobacter pylori SJM180 9787878 YP_003929045.1 CDS HPSJM_05820 NC_014560.1 1179890 1180561 D COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein (glnP) 1179890..1180561 Helicobacter pylori SJM180 9787879 YP_003929046.1 CDS HPSJM_05825 NC_014560.1 1180563 1181309 D COG1126 ABC-type polar amino acid transport system, ATPase component; glutamine ABC transporter, ATP-binding protein (glnQ) 1180563..1181309 Helicobacter pylori SJM180 9787880 YP_003929047.1 CDS HPSJM_05830 NC_014560.1 1181358 1182191 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter periplasmic glutamine-binding protein 1181358..1182191 Helicobacter pylori SJM180 9787881 YP_003929048.1 CDS HPSJM_05835 NC_014560.1 1182313 1182864 D hypothetical protein 1182313..1182864 Helicobacter pylori SJM180 9787882 YP_003929049.1 CDS HPSJM_05840 NC_014560.1 1183136 1184359 R COG0738 Fucose permease; glucose/galactose transporter complement(1183136..1184359) Helicobacter pylori SJM180 9787883 YP_003929050.1 CDS HPSJM_05845 NC_014560.1 1184489 1185796 R COG2252 Permeases; hypothetical protein complement(1184489..1185796) Helicobacter pylori SJM180 9787884 YP_003929051.1 CDS HPSJM_05850 NC_014560.1 1185897 1186103 D hypothetical protein 1185897..1186103 Helicobacter pylori SJM180 9787885 YP_003929052.1 CDS HPSJM_05855 NC_014560.1 1186106 1186228 D hypothetical protein 1186106..1186228 Helicobacter pylori SJM180 9787886 YP_003929053.1 CDS HPSJM_05860 NC_014560.1 1186248 1188170 R outer membrane protein complement(1186248..1188170) Helicobacter pylori SJM180 9787887 YP_003929054.1 CDS HPSJM_05865 NC_014560.1 1188414 1188506 D hypothetical protein 1188414..1188506 Helicobacter pylori SJM180 9787888 YP_003929055.1 CDS HPSJM_05870 NC_014560.1 1188651 1188749 R hypothetical protein complement(1188651..1188749) Helicobacter pylori SJM180 9787889 YP_003929056.1 CDS HPSJM_05875 NC_014560.1 1189005 1189706 R COG0813 Purine-nucleoside phosphorylase; purine-nucleoside phosphorylase complement(1189005..1189706) Helicobacter pylori SJM180 9787890 YP_003929057.1 CDS HPSJM_05880 NC_014560.1 1189703 1190944 R COG1015 Phosphopentomutase; phosphopentomutase complement(1189703..1190944) Helicobacter pylori SJM180 9787891 YP_003929058.1 CDS HPSJM_05885 NC_014560.1 1190956 1192212 R COG1972 Nucleoside permease; pyrimidine nucleoside transport protein (nupC) complement(1190956..1192212) Helicobacter pylori SJM180 9787892 YP_003929059.1 CDS HPSJM_05890 NC_014560.1 1192500 1192604 R hypothetical protein complement(1192500..1192604) Helicobacter pylori SJM180 9787894 YP_003929060.1 CDS HPSJM_05895 NC_014560.1 1192528 1193859 D COG0477 Permeases of the major facilitator superfamily; multidrug-efflux transporter 1192528..1193859 Helicobacter pylori SJM180 9787895 YP_003929061.1 CDS HPSJM_05900 NC_014560.1 1193878 1194639 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; putative PP-loop family ATPase 1193878..1194639 Helicobacter pylori SJM180 9787896 YP_003929062.1 CDS HPSJM_05905 NC_014560.1 1194648 1195799 R COG0475 Kef-type K+ transport systems, membrane components; Na+/H+ antiporter complement(1194648..1195799) Helicobacter pylori SJM180 9787897 YP_003929063.1 CDS HPSJM_05910 NC_014560.1 1195825 1197204 R COG0534 Na+-driven multidrug efflux pump; hypothetical protein complement(1195825..1197204) Helicobacter pylori SJM180 9787898 YP_003929064.1 CDS HPSJM_05915 NC_014560.1 1197178 1197315 D hypothetical protein 1197178..1197315 Helicobacter pylori SJM180 9787899 YP_003929065.1 CDS HPSJM_05920 NC_014560.1 1197374 1198549 R COG2814 Arabinose efflux permease; sugar efflux transporter complement(1197374..1198549) Helicobacter pylori SJM180 9787900 YP_003929066.1 CDS HPSJM_05925 NC_014560.1 1198812 1199555 D COG3338 Carbonic anhydrase; Alpha-carbonic anhydrase; putative signal peptide 1198812..1199555 Helicobacter pylori SJM180 9787901 YP_003929067.1 CDS HPSJM_05930 NC_014560.1 1199786 1200874 R hypothetical protein complement(1199786..1200874) Helicobacter pylori SJM180 9787902 YP_003929068.1 CDS HPSJM_05935 NC_014560.1 1201133 1201291 R hypothetical protein complement(1201133..1201291) Helicobacter pylori SJM180 9787903 YP_003929069.1 CDS HPSJM_05940 NC_014560.1 1201334 1202293 R hypothetical protein complement(1201334..1202293) Helicobacter pylori SJM180 9787904 YP_003929070.1 CDS HPSJM_05945 NC_014560.1 1202750 1203790 R COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(1202750..1203790) Helicobacter pylori SJM180 9787905 YP_003929071.1 CDS hisS NC_014560.1 1203777 1205105 R COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(1203777..1205105) Helicobacter pylori SJM180 9787906 YP_003929072.1 CDS HPSJM_05955 NC_014560.1 1205167 1206216 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase II 1205167..1206216 Helicobacter pylori SJM180 9787907 YP_003929073.1 CDS HPSJM_05960 NC_014560.1 1206363 1206743 R hypothetical protein complement(1206363..1206743) Helicobacter pylori SJM180 9787908 YP_003929074.1 CDS HPSJM_05965 NC_014560.1 1206961 1207950 D COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases); aldo-ketoreductase, putative 1206961..1207950 Helicobacter pylori SJM180 9787909 YP_003929075.1 CDS HPSJM_05970 NC_014560.1 1208508 1210586 R COG0480 Translation elongation factors (GTPases); elongation factor G complement(1208508..1210586) Helicobacter pylori SJM180 9787910 YP_003929076.1 CDS HPSJM_05975 NC_014560.1 1210598 1211065 R COG0049 Ribosomal protein S7; 30S ribosomal protein S7 complement(1210598..1211065) Helicobacter pylori SJM180 9787911 YP_003929077.1 CDS rpsL NC_014560.1 1211081 1211488 R COG0048 Ribosomal protein S12; 30S ribosomal protein S12 complement(1211081..1211488) Helicobacter pylori SJM180 9787912 YP_003929078.1 CDS HPSJM_05985 NC_014560.1 1211577 1220249 R COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta/beta' complement(1211577..1220249) Helicobacter pylori SJM180 9787913 YP_003929079.1 CDS rplL NC_014560.1 1220471 1220848 R COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(1220471..1220848) Helicobacter pylori SJM180 9787914 YP_003929080.1 CDS rplJ NC_014560.1 1220893 1221387 R COG0244 Ribosomal protein L10; 50S ribosomal protein L10 complement(1220893..1221387) Helicobacter pylori SJM180 9787915 YP_003929081.1 CDS rplA NC_014560.1 1221498 1222202 R COG0081 Ribosomal protein L1; 50S ribosomal protein L1 complement(1221498..1222202) Helicobacter pylori SJM180 9787916 YP_003929082.1 CDS rplK NC_014560.1 1222254 1222679 R COG0080 Ribosomal protein L11; 50S ribosomal protein L11 complement(1222254..1222679) Helicobacter pylori SJM180 9787917 YP_003929083.1 CDS nusG NC_014560.1 1222697 1223224 R COG0250 Transcription antiterminator; transcription antitermination protein NusG complement(1222697..1223224) Helicobacter pylori SJM180 9787918 YP_003929084.1 CDS secE NC_014560.1 1223255 1223434 R preprotein translocase subunit SecE complement(1223255..1223434) Helicobacter pylori SJM180 9787919 YP_003929085.1 CDS rpmG NC_014560.1 1223692 1223850 R COG0267 Ribosomal protein L33; 50S ribosomal protein L33 complement(1223692..1223850) Helicobacter pylori SJM180 9787921 YP_003929086.1 CDS HPSJM_06025 NC_014560.1 1223884 1225083 R COG0050 GTPases - translation elongation factors; elongation factor Tu complement(1223884..1225083) Helicobacter pylori SJM180 9787922 YP_003929087.1 CDS HPSJM_06030 NC_014560.1 1225781 1227517 D COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC transporter ATPase 1225781..1227517 Helicobacter pylori SJM180 9787927 YP_003929088.1 CDS HPSJM_06035 NC_014560.1 1227526 1228194 R COG0546 Predicted phosphatases; hypothetical protein complement(1227526..1228194) Helicobacter pylori SJM180 9787928 YP_003929089.1 CDS HPSJM_06040 NC_014560.1 1228298 1229287 R COG3392 Adenine-specific DNA methylase; adenine-specific methyltransferase complement(1228298..1229287) Helicobacter pylori SJM180 9787929 YP_003929090.1 CDS HPSJM_06045 NC_014560.1 1229296 1229982 R ulcer-associated gene restriction endonuclease (iceA) complement(1229296..1229982) Helicobacter pylori SJM180 9787930 YP_003929091.1 CDS HPSJM_06050 NC_014560.1 1230034 1230549 R COG1045 Serine acetyltransferase; serine acetyltransferase complement(1230034..1230549) Helicobacter pylori SJM180 9787931 YP_003929092.1 CDS HPSJM_06055 NC_014560.1 1231126 1231443 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C complement(1231126..1231443) Helicobacter pylori SJM180 9787934 YP_003929093.1 CDS HPSJM_06060 NC_014560.1 1231576 1233642 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(1231576..1233642) Helicobacter pylori SJM180 9787935 YP_003929094.1 CDS HPSJM_06065 NC_014560.1 1233645 1234349 R COG1926 Predicted phosphoribosyltransferases; hypothetical protein complement(1233645..1234349) Helicobacter pylori SJM180 9787936 YP_003929095.1 CDS HPSJM_06070 NC_014560.1 1234364 1236625 R COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein complement(1234364..1236625) Helicobacter pylori SJM180 9787937 YP_003929096.1 CDS HPSJM_06075 NC_014560.1 1236628 1237107 R hypothetical protein complement(1236628..1237107) Helicobacter pylori SJM180 9787938 YP_003929097.1 CDS HPSJM_06080 NC_014560.1 1237156 1238430 R COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase complement(1237156..1238430) Helicobacter pylori SJM180 9787939 YP_003929098.1 CDS HPSJM_06085 NC_014560.1 1238743 1239429 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein complement(1238743..1239429) Helicobacter pylori SJM180 9787940 YP_003929099.1 CDS HPSJM_06090 NC_014560.1 1239423 1240127 R COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase complement(1239423..1240127) Helicobacter pylori SJM180 9787941 YP_003929100.1 CDS HPSJM_06095 NC_014560.1 1240167 1243007 R COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase complement(1240167..1243007) Helicobacter pylori SJM180 9787942 YP_003929101.1 CDS HPSJM_06100 NC_014560.1 1243079 1243417 D COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 1243079..1243417 Helicobacter pylori SJM180 9787943 YP_003929102.1 CDS hemD NC_014560.1 1243420 1244100 D COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 1243420..1244100 Helicobacter pylori SJM180 9787944 YP_003929103.1 CDS HPSJM_06110 NC_014560.1 1244147 1244539 D COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB 1244147..1244539 Helicobacter pylori SJM180 9787945 YP_003929104.1 CDS HPSJM_06115 NC_014560.1 1244585 1245622 R COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase complement(1244585..1245622) Helicobacter pylori SJM180 9787946 YP_003929105.1 CDS HPSJM_06120 NC_014560.1 1245718 1246008 D COG2863 Cytochrome c553; cytochrome c-553 1245718..1246008 Helicobacter pylori SJM180 9787947 YP_003929106.1 CDS HPSJM_06125 NC_014560.1 1246001 1246093 R hypothetical protein complement(1246001..1246093) Helicobacter pylori SJM180 9787948 YP_003929107.1 CDS HPSJM_06130 NC_014560.1 1246168 1246635 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dinucleoside polyphosphate hydrolase 1246168..1246635 Helicobacter pylori SJM180 9787949 YP_003929108.1 CDS HPSJM_06135 NC_014560.1 1246637 1247854 D COG0527 Aspartokinases; aspartate kinase 1246637..1247854 Helicobacter pylori SJM180 9787950 YP_003929109.1 CDS HPSJM_06140 NC_014560.1 1247851 1248393 D hypothetical protein 1247851..1248393 Helicobacter pylori SJM180 9787951 YP_003929110.1 CDS HPSJM_06145 NC_014560.1 1248390 1249046 D COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1248390..1249046 Helicobacter pylori SJM180 9787952 YP_003929111.1 CDS HPSJM_06150 NC_014560.1 1249043 1250185 D COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 1249043..1250185 Helicobacter pylori SJM180 9787953 YP_003929112.1 CDS HPSJM_06155 NC_014560.1 1250279 1250740 R hypothetical protein complement(1250279..1250740) Helicobacter pylori SJM180 9787954 YP_003929113.1 CDS HPSJM_06160 NC_014560.1 1251106 1252002 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 1251106..1252002 Helicobacter pylori SJM180 9787955 YP_003929114.1 CDS HPSJM_06165 NC_014560.1 1252006 1253253 D hypothetical protein 1252006..1253253 Helicobacter pylori SJM180 9787956 YP_003929115.1 CDS HPSJM_06170 NC_014560.1 1253332 1253883 D COG2952 Uncharacterized protein conserved in bacteria; hypothetical protein 1253332..1253883 Helicobacter pylori SJM180 9787957 YP_003929116.1 CDS HPSJM_06175 NC_014560.1 1253883 1255010 D COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 1253883..1255010 Helicobacter pylori SJM180 9787958 YP_003929117.1 CDS amiF NC_014560.1 1255175 1256179 D COG0388 Predicted amidohydrolase; formamidase 1255175..1256179 Helicobacter pylori SJM180 9787959 YP_003929118.1 CDS HPSJM_06185 NC_014560.1 1256680 1257141 R hypothetical protein complement(1256680..1257141) Helicobacter pylori SJM180 9787960 YP_003929119.1 CDS HPSJM_06190 NC_014560.1 1257248 1257820 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(1257248..1257820) Helicobacter pylori SJM180 9787961 YP_003929120.1 CDS alaS NC_014560.1 1257822 1260365 R COG0013 Alanyl-tRNA synthetase; alanyl-tRNA synthetase complement(1257822..1260365) Helicobacter pylori SJM180 9787962 YP_003929121.1 CDS HPSJM_06200 NC_014560.1 1260485 1260715 D COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 1260485..1260715 Helicobacter pylori SJM180 9787963 YP_003929122.1 CDS HPSJM_06205 NC_014560.1 1261039 1261194 R hypothetical protein complement(1261039..1261194) Helicobacter pylori SJM180 9787964 YP_003929123.1 CDS HPSJM_06210 NC_014560.1 1261270 1263408 R outer membrane protein HopU complement(1261270..1263408) Helicobacter pylori SJM180 9787965 YP_003929124.1 CDS rpsR NC_014560.1 1263970 1264227 R COG0238 Ribosomal protein S18; 30S ribosomal protein S18 complement(1263970..1264227) Helicobacter pylori SJM180 9787966 YP_003929125.1 CDS HPSJM_06220 NC_014560.1 1264250 1264795 R COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein complement(1264250..1264795) Helicobacter pylori SJM180 9787967 YP_003929126.1 CDS rpsF NC_014560.1 1264805 1265233 R COG0360 Ribosomal protein S6; 30S ribosomal protein S6 complement(1264805..1265233) Helicobacter pylori SJM180 9787968 YP_003929127.1 CDS HPSJM_06230 NC_014560.1 1265225 1265389 D hypothetical protein 1265225..1265389 Helicobacter pylori SJM180 9787969 YP_003929128.1 CDS HPSJM_06235 NC_014560.1 1265386 1266408 R COG1466 DNA polymerase III, delta subunit; DNA polymerase III subunit delta complement(1265386..1266408) Helicobacter pylori SJM180 9787970 YP_003929129.1 CDS HPSJM_06240 NC_014560.1 1266398 1268332 R COG0557 Exoribonuclease R; ribonuclease R complement(1266398..1268332) Helicobacter pylori SJM180 9787971 YP_003929130.1 CDS aroE NC_014560.1 1268332 1269123 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(1268332..1269123) Helicobacter pylori SJM180 9787972 YP_003929131.1 CDS HPSJM_06250 NC_014560.1 1269131 1269706 R hypothetical protein complement(1269131..1269706) Helicobacter pylori SJM180 9787973 YP_003929132.1 CDS HPSJM_06255 NC_014560.1 1269727 1270773 R COG4174 ABC-type uncharacterized transport system, permease component; oligopeptide ABC transporter, permease protein complement(1269727..1270773) Helicobacter pylori SJM180 9787974 YP_003929133.1 CDS HPSJM_06260 NC_014560.1 1270770 1272551 R COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein complement(1270770..1272551) Helicobacter pylori SJM180 9787975 YP_003929134.1 CDS HPSJM_06265 NC_014560.1 1272552 1273532 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase complement(1272552..1273532) Helicobacter pylori SJM180 9787976 YP_003929135.1 CDS HPSJM_06270 NC_014560.1 1273604 1274341 R COG0500 SAM-dependent methyltransferases; Biotin biosynthesis protein BioC complement(1273604..1274341) Helicobacter pylori SJM180 9787977 YP_003929136.1 CDS secG NC_014560.1 1274465 1275064 D COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 1274465..1275064 Helicobacter pylori SJM180 9787978 YP_003929137.1 CDS frr NC_014560.1 1275064 1275621 D COG0233 Ribosome recycling factor; ribosome recycling factor 1275064..1275621 Helicobacter pylori SJM180 9787979 YP_003929138.1 CDS pyrE NC_014560.1 1275625 1276230 D COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 1275625..1276230 Helicobacter pylori SJM180 9787980 YP_003929139.1 CDS HPSJM_06290 NC_014560.1 1276220 1276684 D COG1714 Predicted membrane protein/domain; hypothetical protein 1276220..1276684 Helicobacter pylori SJM180 9787981 YP_003929140.1 CDS HPSJM_06295 NC_014560.1 1276681 1277370 D COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1276681..1277370 Helicobacter pylori SJM180 9787982 YP_003929141.1 CDS HPSJM_06300 NC_014560.1 1277478 1277879 D COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH dehydrogenase subunit A 1277478..1277879 Helicobacter pylori SJM180 9787983 YP_003929142.1 CDS HPSJM_06305 NC_014560.1 1277879 1278358 D COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 1277879..1278358 Helicobacter pylori SJM180 9787984 YP_003929143.1 CDS HPSJM_06310 NC_014560.1 1278358 1279155 D COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH dehydrogenase subunit C 1278358..1279155 Helicobacter pylori SJM180 9787985 YP_003929144.1 CDS HPSJM_06315 NC_014560.1 1279157 1280386 D COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH dehydrogenase subunit D 1279157..1280386 Helicobacter pylori SJM180 9787986 YP_003929145.1 CDS HPSJM_06320 NC_014560.1 1280383 1280613 D putative NADH oxidoreductase I 1280383..1280613 Helicobacter pylori SJM180 9787987 YP_003929146.1 CDS HPSJM_06325 NC_014560.1 1280616 1281602 D putative NADH oxidoreductase I 1280616..1281602 Helicobacter pylori SJM180 9787988 YP_003929147.1 CDS HPSJM_06330 NC_014560.1 1281599 1284163 D COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 1281599..1284163 Helicobacter pylori SJM180 9787989 YP_003929148.1 CDS HPSJM_06335 NC_014560.1 1284160 1285149 D COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH dehydrogenase subunit H 1284160..1285149 Helicobacter pylori SJM180 9787990 YP_003929149.1 CDS HPSJM_06340 NC_014560.1 1285160 1285822 D COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 1285160..1285822 Helicobacter pylori SJM180 9787991 YP_003929150.1 CDS HPSJM_06345 NC_014560.1 1285815 1286363 D COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH dehydrogenase subunit J 1285815..1286363 Helicobacter pylori SJM180 9787992 YP_003929151.1 CDS HPSJM_06350 NC_014560.1 1286360 1286662 D COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH dehydrogenase subunit K 1286360..1286662 Helicobacter pylori SJM180 9787993 YP_003929152.1 CDS HPSJM_06355 NC_014560.1 1286665 1288503 D COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH dehydrogenase subunit L 1286665..1288503 Helicobacter pylori SJM180 9787994 YP_003929153.1 CDS HPSJM_06360 NC_014560.1 1288507 1290045 D COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M 1288507..1290045 Helicobacter pylori SJM180 9787995 YP_003929154.1 CDS HPSJM_06365 NC_014560.1 1290032 1291504 D COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH dehydrogenase subunit N 1290032..1291504 Helicobacter pylori SJM180 9787996 YP_003929155.1 CDS HPSJM_06370 NC_014560.1 1291494 1293899 D COG1729 Uncharacterized protein conserved in bacteria; paralysed flagella protein 1291494..1293899 Helicobacter pylori SJM180 9787997 YP_003929156.1 CDS HPSJM_06375 NC_014560.1 1293901 1295280 D COG1109 Phosphomannomutase; phosphomannomutase 1293901..1295280 Helicobacter pylori SJM180 9787998 YP_003929157.1 CDS HPSJM_06380 NC_014560.1 1295489 1295737 D hypothetical protein 1295489..1295737 Helicobacter pylori SJM180 9787999 YP_003929158.1 CDS HPSJM_06385 NC_014560.1 1295770 1295925 D hypothetical protein 1295770..1295925 Helicobacter pylori SJM180 9788000 YP_003929159.1 CDS HPSJM_06390 NC_014560.1 1295930 1296151 D hypothetical protein 1295930..1296151 Helicobacter pylori SJM180 9788001 YP_003929160.1 CDS HPSJM_06395 NC_014560.1 1296121 1296582 D COG4278 Uncharacterized conserved protein; hypothetical protein 1296121..1296582 Helicobacter pylori SJM180 9788002 YP_003929161.1 CDS HPSJM_06400 NC_014560.1 1296585 1296809 R thiamine pyrophosphokinase complement(1296585..1296809) Helicobacter pylori SJM180 9788003 YP_003929162.1 CDS trpA NC_014560.1 1297101 1297889 R COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(1297101..1297889) Helicobacter pylori SJM180 9788004 YP_003929163.1 CDS HPSJM_06410 NC_014560.1 1297891 1299066 R COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta complement(1297891..1299066) Helicobacter pylori SJM180 9788005 YP_003929164.1 CDS HPSJM_06415 NC_014560.1 1299068 1300426 R COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1299068..1300426) Helicobacter pylori SJM180 9788006 YP_003929165.1 CDS trpD NC_014560.1 1300419 1301426 R COG0547 Anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase complement(1300419..1301426) Helicobacter pylori SJM180 9788007 YP_003929166.1 CDS HPSJM_06425 NC_014560.1 1301423 1302007 R COG0512 Anthranilate/para-aminobenzoate synthases component II; anthranilate synthase component II complement(1301423..1302007) Helicobacter pylori SJM180 9788008 YP_003929167.1 CDS HPSJM_06430 NC_014560.1 1302004 1303506 R COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I complement(1302004..1303506) Helicobacter pylori SJM180 9788009 YP_003929168.1 CDS HPSJM_06435 NC_014560.1 1303737 1304795 R COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein complement(1303737..1304795) Helicobacter pylori SJM180 9788010 YP_003929169.1 CDS HPSJM_06440 NC_014560.1 1304863 1305555 R COG2503 Predicted secreted acid phosphatase; hypothetical protein complement(1304863..1305555) Helicobacter pylori SJM180 9788011 YP_003929170.1 CDS HPSJM_06445 NC_014560.1 1305725 1306273 D COG2353 Uncharacterized conserved protein; hypothetical protein 1305725..1306273 Helicobacter pylori SJM180 9788012 YP_003929171.1 CDS HPSJM_06450 NC_014560.1 1306337 1306990 R COG0819 Putative transcription activator; transcriptional regulator (tenA) complement(1306337..1306990) Helicobacter pylori SJM180 9788013 YP_003929172.1 CDS HPSJM_06455 NC_014560.1 1307720 1308100 D hypothetical protein 1307720..1308100 Helicobacter pylori SJM180 9788014 YP_003929173.1 CDS HPSJM_06460 NC_014560.1 1308140 1308634 D hypothetical protein 1308140..1308634 Helicobacter pylori SJM180 9788015 YP_003929174.1 CDS HPSJM_06465 NC_014560.1 1308820 1309482 D COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter 1308820..1309482 Helicobacter pylori SJM180 9788016 YP_003929175.1 CDS HPSJM_06470 NC_014560.1 1309470 1310084 D COG1564 Thiamine pyrophosphokinase; thiamine pyrophosphokinase 1309470..1310084 Helicobacter pylori SJM180 9788017 YP_003929176.1 CDS HPSJM_06475 NC_014560.1 1310618 1310749 R hypothetical protein complement(1310618..1310749) Helicobacter pylori SJM180 9788018 YP_003929177.1 CDS rplQ NC_014560.1 1310746 1311096 R COG0203 Ribosomal protein L17; 50S ribosomal protein L17 complement(1310746..1311096) Helicobacter pylori SJM180 9788019 YP_003929178.1 CDS HPSJM_06485 NC_014560.1 1311096 1312130 R COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha complement(1311096..1312130) Helicobacter pylori SJM180 9788020 YP_003929179.1 CDS rpsD NC_014560.1 1312142 1312768 R COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 complement(1312142..1312768) Helicobacter pylori SJM180 9788021 YP_003929180.1 CDS HPSJM_06495 NC_014560.1 1312778 1313173 R COG0100 Ribosomal protein S11; 30S ribosomal protein S11 complement(1312778..1313173) Helicobacter pylori SJM180 9788022 YP_003929181.1 CDS rpsM NC_014560.1 1313196 1313558 R COG0099 Ribosomal protein S13; 30S ribosomal protein S13 complement(1313196..1313558) Helicobacter pylori SJM180 9788023 YP_003929182.1 CDS HPSJM_06505 NC_014560.1 1313562 1313675 R COG0257 Ribosomal protein L36; hypothetical protein complement(1313562..1313675) Helicobacter pylori SJM180 9788024 YP_003929183.1 CDS infA NC_014560.1 1313753 1313971 R COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 complement(1313753..1313971) Helicobacter pylori SJM180 9788025 YP_003929184.1 CDS HPSJM_06515 NC_014560.1 1313971 1314732 R COG0024 Methionine aminopeptidase; methionine aminopeptidase complement(1313971..1314732) Helicobacter pylori SJM180 9788026 YP_003929185.1 CDS secY NC_014560.1 1314732 1315994 R COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(1314732..1315994) Helicobacter pylori SJM180 9788027 YP_003929186.1 CDS rplO NC_014560.1 1316037 1316438 R COG0200 Ribosomal protein L15; 50S ribosomal protein L15 complement(1316037..1316438) Helicobacter pylori SJM180 9788028 YP_003929187.1 CDS rpsE NC_014560.1 1316456 1316899 R COG0098 Ribosomal protein S5; 30S ribosomal protein S5 complement(1316456..1316899) Helicobacter pylori SJM180 9788029 YP_003929188.1 CDS rplR NC_014560.1 1316914 1317270 R COG0256 Ribosomal protein L18; 50S ribosomal protein L18 complement(1316914..1317270) Helicobacter pylori SJM180 9788030 YP_003929189.1 CDS rplF NC_014560.1 1317284 1317820 R COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 complement(1317284..1317820) Helicobacter pylori SJM180 9788031 YP_003929190.1 CDS rpsH NC_014560.1 1317831 1318226 R COG0096 Ribosomal protein S8; 30S ribosomal protein S8 complement(1317831..1318226) Helicobacter pylori SJM180 9788032 YP_003929191.1 CDS rpsN NC_014560.1 1318236 1318421 R COG0199 Ribosomal protein S14; 30S ribosomal protein S14 complement(1318236..1318421) Helicobacter pylori SJM180 9788033 YP_003929192.1 CDS rplE NC_014560.1 1318431 1318976 R COG0094 Ribosomal protein L5; 50S ribosomal protein L5 complement(1318431..1318976) Helicobacter pylori SJM180 9788034 YP_003929193.1 CDS rplX NC_014560.1 1318989 1319210 R COG0198 Ribosomal protein L24; 50S ribosomal protein L24 complement(1318989..1319210) Helicobacter pylori SJM180 9788035 YP_003929194.1 CDS rplN NC_014560.1 1319210 1319578 R COG0093 Ribosomal protein L14; 50S ribosomal protein L14 complement(1319210..1319578) Helicobacter pylori SJM180 9788036 YP_003929195.1 CDS rpsQ NC_014560.1 1319581 1319841 R COG0186 Ribosomal protein S17; 30S ribosomal protein S17 complement(1319581..1319841) Helicobacter pylori SJM180 9788037 YP_003929196.1 CDS HPSJM_06575 NC_014560.1 1319855 1320055 R COG0255 Ribosomal protein L29; 50S ribosomal protein L29 complement(1319855..1320055) Helicobacter pylori SJM180 9788038 YP_003929197.1 CDS rplP NC_014560.1 1320042 1320467 R COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 complement(1320042..1320467) Helicobacter pylori SJM180 9788039 YP_003929198.1 CDS rpsC NC_014560.1 1320470 1321174 R COG0092 Ribosomal protein S3; 30S ribosomal protein S3 complement(1320470..1321174) Helicobacter pylori SJM180 9788040 YP_003929199.1 CDS rplV NC_014560.1 1321178 1321546 R COG0091 Ribosomal protein L22; 50S ribosomal protein L22 complement(1321178..1321546) Helicobacter pylori SJM180 9788041 YP_003929200.1 CDS rpsS NC_014560.1 1321556 1321837 R COG0185 Ribosomal protein S19; 30S ribosomal protein S19 complement(1321556..1321837) Helicobacter pylori SJM180 9788042 YP_003929201.1 CDS rplB NC_014560.1 1321848 1322678 R COG0090 Ribosomal protein L2; 50S ribosomal protein L2 complement(1321848..1322678) Helicobacter pylori SJM180 9788043 YP_003929202.1 CDS rplW NC_014560.1 1322695 1322976 R COG0089 Ribosomal protein L23; 50S ribosomal protein L23 complement(1322695..1322976) Helicobacter pylori SJM180 9788044 YP_003929203.1 CDS rplD NC_014560.1 1322980 1323627 R COG0088 Ribosomal protein L4; 50S ribosomal protein L4 complement(1322980..1323627) Helicobacter pylori SJM180 9788045 YP_003929204.1 CDS rplC NC_014560.1 1323662 1324237 R COG0087 Ribosomal protein L3; 50S ribosomal protein L3 complement(1323662..1324237) Helicobacter pylori SJM180 9788046 YP_003929205.1 CDS rpsJ NC_014560.1 1324274 1324588 R COG0051 Ribosomal protein S10; 30S ribosomal protein S10 complement(1324274..1324588) Helicobacter pylori SJM180 9788047 YP_003929206.1 CDS HPSJM_06625 NC_014560.1 1324796 1325881 D COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; hypothetical protein 1324796..1325881 Helicobacter pylori SJM180 9788048 YP_003929207.1 CDS HPSJM_06630 NC_014560.1 1326113 1326697 D hypothetical protein 1326113..1326697 Helicobacter pylori SJM180 9788049 YP_003929208.1 CDS rnhB NC_014560.1 1326671 1327285 R COG0164 Ribonuclease HII; ribonuclease HII complement(1326671..1327285) Helicobacter pylori SJM180 9788050 YP_003929209.1 CDS HPSJM_06640 NC_014560.1 1327329 1327508 R hypothetical protein complement(1327329..1327508) Helicobacter pylori SJM180 9788051 YP_003929210.1 CDS fumC NC_014560.1 1327587 1328978 R COG0114 Fumarase; fumarate hydratase complement(1327587..1328978) Helicobacter pylori SJM180 9788052 YP_003929211.1 CDS HPSJM_06650 NC_014560.1 1329157 1329534 D hypothetical protein 1329157..1329534 Helicobacter pylori SJM180 9788053 YP_003929212.1 CDS HPSJM_06655 NC_014560.1 1329539 1330777 D hypothetical protein 1329539..1330777 Helicobacter pylori SJM180 9788054 YP_003929213.1 CDS HPSJM_06660 NC_014560.1 1330774 1331772 D COG0845 Membrane-fusion protein; putative cobalt-zinc-cadmium resistance protein CzcB; putative signal peptide 1330774..1331772 Helicobacter pylori SJM180 9788055 YP_003929214.1 CDS HPSJM_06665 NC_014560.1 1331773 1334880 D COG3696 Putative silver efflux pump; putative heavy metal efflux pump CzcA 1331773..1334880 Helicobacter pylori SJM180 9788056 YP_003929215.1 CDS HPSJM_06670 NC_014560.1 1334861 1335217 R COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance); hypothetical protein complement(1334861..1335217) Helicobacter pylori SJM180 9788057 YP_003929216.1 CDS HPSJM_06675 NC_014560.1 1335211 1335897 R COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); hypothetical protein complement(1335211..1335897) Helicobacter pylori SJM180 9788058 YP_003929217.1 CDS HPSJM_06680 NC_014560.1 1335908 1337017 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ complement(1335908..1337017) Helicobacter pylori SJM180 9788059 YP_003929218.1 CDS HPSJM_06685 NC_014560.1 1337142 1338272 D hypothetical protein 1337142..1338272 Helicobacter pylori SJM180 9788060 YP_003929219.1 CDS mnmA NC_014560.1 1338316 1339344 R COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA complement(1338316..1339344) Helicobacter pylori SJM180 9788061 YP_003929220.1 CDS HPSJM_06695 NC_014560.1 1339484 1340245 D COG2214 DnaJ-class molecular chaperone; hypothetical protein 1339484..1340245 Helicobacter pylori SJM180 9788062 YP_003929221.1 CDS HPSJM_06700 NC_014560.1 1340242 1340757 R COG1057 Nicotinic acid mononucleotide adenylyltransferase; hypothetical protein complement(1340242..1340757) Helicobacter pylori SJM180 9788063 YP_003929222.1 CDS HPSJM_06705 NC_014560.1 1340750 1341196 R COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator complement(1340750..1341196) Helicobacter pylori SJM180 9788064 YP_003929223.1 CDS HPSJM_06710 NC_014560.1 1341506 1341943 D COG0811 Biopolymer transport proteins; biopolymer transport protein 1341506..1341943 Helicobacter pylori SJM180 9788065 YP_003929224.1 CDS HPSJM_06715 NC_014560.1 1341940 1342329 D COG0848 Biopolymer transport protein; biopolymer transport protein exbD 1341940..1342329 Helicobacter pylori SJM180 9788066 YP_003929225.1 CDS HPSJM_06720 NC_014560.1 1342295 1343155 D COG0810 Periplasmic protein TonB, links inner and outer membranes; siderophore-mediated iron transport protein 1342295..1343155 Helicobacter pylori SJM180 9788067 YP_003929226.1 CDS HPSJM_06725 NC_014560.1 1343348 1345429 D outer membrane protein 1343348..1345429 Helicobacter pylori SJM180 9788068 YP_003929227.1 CDS HPSJM_06730 NC_014560.1 1345570 1346298 R COG0861 Membrane protein TerC, possibly involved in tellurium resistance; hypothetical protein complement(1345570..1346298) Helicobacter pylori SJM180 9788069 YP_003929228.1 CDS HPSJM_06735 NC_014560.1 1346305 1347261 R COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein complement(1346305..1347261) Helicobacter pylori SJM180 9788070 YP_003929229.1 CDS pgk NC_014560.1 1347277 1348485 R COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase complement(1347277..1348485) Helicobacter pylori SJM180 9788071 YP_003929230.1 CDS HPSJM_06745 NC_014560.1 1348501 1349493 R COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(1348501..1349493) Helicobacter pylori SJM180 9788072 YP_003929231.1 CDS HPSJM_06750 NC_014560.1 1349582 1350283 R COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase complement(1349582..1350283) Helicobacter pylori SJM180 9788073 YP_003929232.1 CDS HPSJM_06755 NC_014560.1 1350280 1350981 R COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1350280..1350981) Helicobacter pylori SJM180 9788074 YP_003929233.1 CDS HPSJM_06760 NC_014560.1 1350968 1352083 R hypothetical protein complement(1350968..1352083) Helicobacter pylori SJM180 9788075 YP_003929234.1 CDS HPSJM_06765 NC_014560.1 1352146 1353510 R COG0793 Periplasmic protease; protease complement(1352146..1353510) Helicobacter pylori SJM180 9788076 YP_003929235.1 CDS HPSJM_06790 NC_014560.1 1355815 1356777 R COG4889 Predicted helicase; hypothetical protein complement(1355815..1356777) Helicobacter pylori SJM180 9788077 YP_003929236.1 CDS HPSJM_06795 NC_014560.1 1356870 1359404 R COG0286 Type I restriction-modification system methyltransferase subunit; adenine specific DNA methyltransferase complement(1356870..1359404) Helicobacter pylori SJM180 9788078 YP_003929237.1 CDS HPSJM_06800 NC_014560.1 1359429 1360250 R COG0157 Nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase complement(1359429..1360250) Helicobacter pylori SJM180 9788079 YP_003929238.1 CDS HPSJM_06805 NC_014560.1 1360250 1361260 R COG0379 Quinolinate synthase; quinolinate synthetase complement(1360250..1361260) Helicobacter pylori SJM180 9788080 YP_003929239.1 CDS HPSJM_06810 NC_014560.1 1361250 1362053 R COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase complement(1361250..1362053) Helicobacter pylori SJM180 9788081 YP_003929240.1 CDS HPSJM_06815 NC_014560.1 1362047 1362553 R hypothetical protein complement(1362047..1362553) Helicobacter pylori SJM180 9788082 YP_003929241.1 CDS HPSJM_06820 NC_014560.1 1362566 1363060 R hypothetical protein complement(1362566..1363060) Helicobacter pylori SJM180 9788083 YP_003929242.1 CDS ubiA NC_014560.1 1363053 1363937 R COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; prenyltransferase complement(1363053..1363937) Helicobacter pylori SJM180 9788084 YP_003929243.1 CDS HPSJM_06830 NC_014560.1 1363966 1365279 R COG0658 Predicted membrane metal-binding protein; competence locus E ComE3 complement(1363966..1365279) Helicobacter pylori SJM180 9788085 YP_003929244.1 CDS HPSJM_06835 NC_014560.1 1365276 1366736 R COG0305 Replicative DNA helicase; replicative DNA helicase complement(1365276..1366736) Helicobacter pylori SJM180 9788086 YP_003929245.1 CDS HPSJM_06840 NC_014560.1 1366747 1368141 R COG0062 Uncharacterized conserved protein; hypothetical protein complement(1366747..1368141) Helicobacter pylori SJM180 9788087 YP_003929246.1 CDS HPSJM_06845 NC_014560.1 1368144 1369277 R COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein complement(1368144..1369277) Helicobacter pylori SJM180 9788088 YP_003929247.1 CDS HPSJM_06850 NC_014560.1 1369312 1369953 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator complement(1369312..1369953) Helicobacter pylori SJM180 9788089 YP_003929248.1 CDS HPSJM_06855 NC_014560.1 1370036 1371799 R COG0863 DNA modification methylase; type IIS restriction enzyme R protein (MBOIIR) complement(1370036..1371799) Helicobacter pylori SJM180 9788090 YP_003929249.1 CDS HPSJM_06860 NC_014560.1 1371894 1372103 D hypothetical protein 1371894..1372103 Helicobacter pylori SJM180 9788091 YP_003929250.1 CDS HPSJM_06865 NC_014560.1 1372341 1373312 D COG0582 Integrase; integrase/recombinase XercD family protein 1372341..1373312 Helicobacter pylori SJM180 9788092 YP_003929251.1 CDS HPSJM_06870 NC_014560.1 1373302 1373415 D integrase/recombinase XercD family protein 1373302..1373415 Helicobacter pylori SJM180 9788093 YP_003929252.1 CDS HPSJM_06875 NC_014560.1 1373498 1374181 R hypothetical protein complement(1373498..1374181) Helicobacter pylori SJM180 9788094 YP_003929253.1 CDS HPSJM_06880 NC_014560.1 1374253 1375512 R hypothetical protein complement(1374253..1375512) Helicobacter pylori SJM180 9788095 YP_003929254.1 CDS HPSJM_06885 NC_014560.1 1375514 1375792 R hypothetical protein complement(1375514..1375792) Helicobacter pylori SJM180 9788096 YP_003929255.1 CDS HPSJM_06890 NC_014560.1 1375844 1377244 R hypothetical protein complement(1375844..1377244) Helicobacter pylori SJM180 9788097 YP_003929256.1 CDS HPSJM_06895 NC_014560.1 1377248 1379458 R periplasmic competence protein-like protein complement(1377248..1379458) Helicobacter pylori SJM180 9788098 YP_003929257.1 CDS HPSJM_06900 NC_014560.1 1379519 1380829 R hypothetical protein complement(1379519..1380829) Helicobacter pylori SJM180 9788099 YP_003929258.1 CDS HPSJM_06905 NC_014560.1 1380830 1381867 R hypothetical protein complement(1380830..1381867) Helicobacter pylori SJM180 9788100 YP_003929259.1 CDS HPSJM_06910 NC_014560.1 1382017 1390521 D COG0827 Adenine-specific DNA methylase; adenine specific DNA methyltransferase 1382017..1390521 Helicobacter pylori SJM180 9788101 YP_003929260.1 CDS HPSJM_06915 NC_014560.1 1390672 1390890 D hypothetical protein 1390672..1390890 Helicobacter pylori SJM180 9788102 YP_003929261.1 CDS HPSJM_06920 NC_014560.1 1390880 1392940 D COG0550 Topoisomerase IA; topoisomerase I 1390880..1392940 Helicobacter pylori SJM180 9788103 YP_003929262.1 CDS HPSJM_06925 NC_014560.1 1392995 1393465 D hypothetical protein 1392995..1393465 Helicobacter pylori SJM180 9788104 YP_003929263.1 CDS HPSJM_06930 NC_014560.1 1393435 1394238 D hypothetical protein 1393435..1394238 Helicobacter pylori SJM180 9788105 YP_003929264.1 CDS HPSJM_06935 NC_014560.1 1394312 1394977 R COG0087 Ribosomal protein L3; hypothetical protein complement(1394312..1394977) Helicobacter pylori SJM180 9788106 YP_003929265.1 CDS HPSJM_06940 NC_014560.1 1394955 1395347 R hypothetical protein complement(1394955..1395347) Helicobacter pylori SJM180 9788107 YP_003929266.1 CDS HPSJM_06945 NC_014560.1 1395394 1396062 R COG1192 ATPases involved in chromosome partitioning; hypothetical protein complement(1395394..1396062) Helicobacter pylori SJM180 9788108 YP_003929267.1 CDS HPSJM_06950 NC_014560.1 1396700 1396864 D hypothetical protein 1396700..1396864 Helicobacter pylori SJM180 9788109 YP_003929268.1 CDS HPSJM_06955 NC_014560.1 1396865 1397845 D hypothetical protein 1396865..1397845 Helicobacter pylori SJM180 9788110 YP_003929269.1 CDS HPSJM_06960 NC_014560.1 1397845 1399821 D hypothetical protein 1397845..1399821 Helicobacter pylori SJM180 9788111 YP_003929270.1 CDS HPSJM_06965 NC_014560.1 1399831 1401264 D hypothetical protein 1399831..1401264 Helicobacter pylori SJM180 9788112 YP_003929271.1 CDS HPSJM_06970 NC_014560.1 1401261 1402529 D hypothetical protein 1401261..1402529 Helicobacter pylori SJM180 9788113 YP_003929272.1 CDS HPSJM_06975 NC_014560.1 1402526 1403803 D hypothetical protein 1402526..1403803 Helicobacter pylori SJM180 9788114 YP_003929273.1 CDS HPSJM_06980 NC_014560.1 1403840 1404820 R hypothetical protein complement(1403840..1404820) Helicobacter pylori SJM180 9788115 YP_003929274.1 CDS HPSJM_06985 NC_014560.1 1405053 1406033 D hypothetical protein 1405053..1406033 Helicobacter pylori SJM180 9788116 YP_003929275.1 CDS HPSJM_06990 NC_014560.1 1406203 1406886 D hypothetical protein 1406203..1406886 Helicobacter pylori SJM180 9788117 YP_003929276.1 CDS HPSJM_06995 NC_014560.1 1407011 1407262 D hypothetical protein 1407011..1407262 Helicobacter pylori SJM180 9788118 YP_003929277.1 CDS HPSJM_07000 NC_014560.1 1407279 1408148 D COG3177 Uncharacterized conserved protein; possible cell division protein 1407279..1408148 Helicobacter pylori SJM180 9788119 YP_003929278.1 CDS HPSJM_07005 NC_014560.1 1408465 1409532 R COG0582 Integrase; integrase/recombinase (xerD) complement(1408465..1409532) Helicobacter pylori SJM180 9788120 YP_003929279.1 CDS HPSJM_07010 NC_014560.1 1410926 1412959 R COG3843 Type IV secretory pathway, VirD2 components (relaxase); relaxase complement(1410926..1412959) Helicobacter pylori SJM180 9788121 YP_003929280.1 CDS HPSJM_07015 NC_014560.1 1414005 1415753 R COG3505 Type IV secretory pathway, VirD4 components; VirD4 coupling protein complement(1414005..1415753) Helicobacter pylori SJM180 9788122 YP_003929281.1 CDS HPSJM_07020 NC_014560.1 1415754 1416071 R hypothetical protein complement(1415754..1416071) Helicobacter pylori SJM180 9788123 YP_003929282.1 CDS HPSJM_07025 NC_014560.1 1416101 1416220 R hypothetical protein complement(1416101..1416220) Helicobacter pylori SJM180 9788124 YP_003929283.1 CDS HPSJM_07030 NC_014560.1 1416207 1417070 R COG0863 DNA modification methylase; type IIS restriction enzyme M2 protein (mod) complement(1416207..1417070) Helicobacter pylori SJM180 9788125 YP_003929284.1 CDS HPSJM_07035 NC_014560.1 1417312 1419576 D COG2189 Adenine specific DNA methylase Mod; adenine-specific DNA methylase 1417312..1419576 Helicobacter pylori SJM180 9788126 YP_003929285.1 CDS HPSJM_07040 NC_014560.1 1419586 1422501 D COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type III restriction enzyme R protein 1419586..1422501 Helicobacter pylori SJM180 9788127 YP_003929286.1 CDS HPSJM_07045 NC_014560.1 1422551 1423297 R COG1792 Cell shape-determining protein; rod shape-determining protein MreC complement(1422551..1423297) Helicobacter pylori SJM180 9788128 YP_003929287.1 CDS HPSJM_07050 NC_014560.1 1423301 1424344 R COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB complement(1423301..1424344) Helicobacter pylori SJM180 9788129 YP_003929288.1 CDS clpX NC_014560.1 1424387 1425733 R COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX complement(1424387..1425733) Helicobacter pylori SJM180 9788130 YP_003929289.1 CDS HPSJM_07060 NC_014560.1 1425735 1426547 R COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase complement(1425735..1426547) Helicobacter pylori SJM180 9788131 YP_003929290.1 CDS fabZ NC_014560.1 1426550 1427029 R COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase complement(1426550..1427029) Helicobacter pylori SJM180 9788132 YP_003929291.1 CDS HPSJM_07070 NC_014560.1 1427211 1427600 R COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW complement(1427211..1427600) Helicobacter pylori SJM180 9788133 YP_003929292.1 CDS HPSJM_07075 NC_014560.1 1427818 1427928 D hypothetical protein 1427818..1427928 Helicobacter pylori SJM180 9788134 YP_003929293.1 CDS HPSJM_07080 NC_014560.1 1428008 1428670 D COG4105 DNA uptake lipoprotein; hypothetical protein 1428008..1428670 Helicobacter pylori SJM180 9788135 YP_003929294.1 CDS HPSJM_07085 NC_014560.1 1428713 1431217 D COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La 1428713..1431217 Helicobacter pylori SJM180 9788136 YP_003929295.1 CDS HPSJM_07090 NC_014560.1 1431226 1432053 D COG0287 Prephenate dehydrogenase; prephenate dehydrogenase 1431226..1432053 Helicobacter pylori SJM180 9788137 YP_003929296.1 CDS HPSJM_07095 NC_014560.1 1432381 1433244 R COG1864 DNA/RNA endonuclease G, NUC1; putative endonuclease G complement(1432381..1433244) Helicobacter pylori SJM180 9788138 YP_003929297.1 CDS HPSJM_07100 NC_014560.1 1433369 1435207 R COG2189 Adenine specific DNA methylase Mod; putative type III restriction enzyme M protein complement(1433369..1435207) Helicobacter pylori SJM180 9788139 YP_003929298.1 CDS HPSJM_07105 NC_014560.1 1435210 1437537 R COG3421 Uncharacterized protein conserved in bacteria; putative type III restriction enzyme R protein complement(1435210..1437537) Helicobacter pylori SJM180 9788140 YP_003929299.1 CDS HPSJM_07110 NC_014560.1 1437945 1438793 D COG0502 Biotin synthase and related enzymes; biotin synthase 1437945..1438793 Helicobacter pylori SJM180 9788141 YP_003929300.1 CDS HPSJM_07115 NC_014560.1 1438793 1439671 D COG1295 Predicted membrane protein; putative ribonuclease N 1438793..1439671 Helicobacter pylori SJM180 9788142 YP_003929301.1 CDS HPSJM_07120 NC_014560.1 1440124 1440336 D COG3676 Transposase and inactivated derivatives; hypothetical protein 1440124..1440336 Helicobacter pylori SJM180 9788143 YP_003929302.1 CDS HPSJM_07125 NC_014560.1 1443822 1444088 R hypothetical protein complement(1443822..1444088) Helicobacter pylori SJM180 9788146 YP_003929303.1 CDS HPSJM_07130 NC_014560.1 1444390 1445760 R hypothetical protein complement(1444390..1445760) Helicobacter pylori SJM180 9788147 YP_003929304.1 CDS HPSJM_07135 NC_014560.1 1445776 1446138 R hypothetical protein complement(1445776..1446138) Helicobacter pylori SJM180 9788148 YP_003929305.1 CDS HPSJM_07140 NC_014560.1 1446159 1446563 R hypothetical protein complement(1446159..1446563) Helicobacter pylori SJM180 9788149 YP_003929306.1 CDS HPSJM_07145 NC_014560.1 1446554 1446850 R hypothetical protein complement(1446554..1446850) Helicobacter pylori SJM180 9788150 YP_003929307.1 CDS HPSJM_07150 NC_014560.1 1447108 1447554 R COG0780 Enzyme related to GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase complement(1447108..1447554) Helicobacter pylori SJM180 9788151 YP_003929308.1 CDS HPSJM_07155 NC_014560.1 1447613 1447954 D COG0799 Uncharacterized homolog of plant Iojap protein; iojap-related protein 1447613..1447954 Helicobacter pylori SJM180 9788152 YP_003929309.1 CDS miaA NC_014560.1 1448013 1448858 D COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1448013..1448858 Helicobacter pylori SJM180 9788153 YP_003929310.1 CDS HPSJM_07165 NC_014560.1 1448859 1449962 D COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide biosynthesis protein 1448859..1449962 Helicobacter pylori SJM180 9788154 YP_003929311.1 CDS murB NC_014560.1 1451730 1452509 R COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1451730..1452509) Helicobacter pylori SJM180 9788155 YP_003929312.1 CDS fliQ NC_014560.1 1452513 1452764 R COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ complement(1452513..1452764) Helicobacter pylori SJM180 9788156 YP_003929313.1 CDS fliI NC_014560.1 1452790 1454094 R COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase complement(1452790..1454094) Helicobacter pylori SJM180 9788157 YP_003929314.1 CDS HPSJM_07195 NC_014560.1 1454095 1455009 R COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; putative type IV secretion system ATPase complement(1454095..1455009) Helicobacter pylori SJM180 9788158 YP_003929315.1 CDS ileS NC_014560.1 1455027 1457789 R COG0060 Isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(1455027..1457789) Helicobacter pylori SJM180 9788159 YP_003929316.1 CDS HPSJM_07205 NC_014560.1 1457814 1458068 R COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); putative RNA binding protein complement(1457814..1458068) Helicobacter pylori SJM180 9788160 YP_003929317.1 CDS HPSJM_07210 NC_014560.1 1458170 1458790 D hypothetical protein 1458170..1458790 Helicobacter pylori SJM180 9788161 YP_003929318.1 CDS HPSJM_07225 NC_014560.1 1460002 1460259 R hypothetical protein complement(1460002..1460259) Helicobacter pylori SJM180 9788162 YP_003929319.1 CDS HPSJM_07230 NC_014560.1 1460413 1461486 R COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N complement(1460413..1461486) Helicobacter pylori SJM180 9788163 YP_003929320.1 CDS HPSJM_07235 NC_014560.1 1461483 1462472 R COG0794 Predicted sugar phosphate isomerase involved in capsule formation; hypothetical protein complement(1461483..1462472) Helicobacter pylori SJM180 9788164 YP_003929321.1 CDS HPSJM_07240 NC_014560.1 1462456 1464534 R COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain; ATP-binding protein complement(1462456..1464534) Helicobacter pylori SJM180 9788165 YP_003929322.1 CDS ksgA NC_014560.1 1464572 1465411 R COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase complement(1464572..1465411) Helicobacter pylori SJM180 9788166 YP_003929323.1 CDS HPSJM_07250 NC_014560.1 1465449 1465586 D hypothetical protein 1465449..1465586 Helicobacter pylori SJM180 9788167 YP_003929324.1 CDS HPSJM_07255 NC_014560.1 1465650 1465922 D hypothetical protein 1465650..1465922 Helicobacter pylori SJM180 9788168 YP_003929325.1 CDS HPSJM_07260 NC_014560.1 1466197 1466289 D hypothetical protein 1466197..1466289 Helicobacter pylori SJM180 9788169 YP_003929326.1 CDS HPSJM_07265 NC_014560.1 1466349 1466477 D hypothetical protein 1466349..1466477 Helicobacter pylori SJM180 9788170 YP_003929327.1 CDS HPSJM_07270 NC_014560.1 1466516 1466608 D hypothetical protein 1466516..1466608 Helicobacter pylori SJM180 9788171 YP_003929328.1 CDS HPSJM_07275 NC_014560.1 1466613 1466780 R hypothetical protein complement(1466613..1466780) Helicobacter pylori SJM180 9788172 YP_003929329.1 CDS HPSJM_07280 NC_014560.1 1466825 1469281 R hypothetical protein complement(1466825..1469281) Helicobacter pylori SJM180 9788173 YP_003929330.1 CDS HPSJM_07285 NC_014560.1 1469282 1470163 R COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate hydrolase complement(1469282..1470163) Helicobacter pylori SJM180 9788174 YP_003929331.1 CDS HPSJM_07290 NC_014560.1 1470166 1471044 R COG0616 Periplasmic serine proteases (ClpP class); Signal peptide protease IV (Protease IV) (Endopeptidase IV) complement(1470166..1471044) Helicobacter pylori SJM180 9788175 YP_003929332.1 CDS HPSJM_07295 NC_014560.1 1471115 1471384 D hypothetical protein 1471115..1471384 Helicobacter pylori SJM180 9788176 YP_003929333.1 CDS HPSJM_07300 NC_014560.1 1471589 1472311 D hypothetical protein 1471589..1472311 Helicobacter pylori SJM180 9788177 YP_003929334.1 CDS HPSJM_07305 NC_014560.1 1472308 1473474 D hypothetical protein 1472308..1473474 Helicobacter pylori SJM180 9788178 YP_003929335.1 CDS HPSJM_07310 NC_014560.1 1473484 1473948 D hypothetical protein 1473484..1473948 Helicobacter pylori SJM180 9788179 YP_003929336.1 CDS HPSJM_07315 NC_014560.1 1476311 1477090 R hypothetical protein complement(1476311..1477090) Helicobacter pylori SJM180 9788181 YP_003929337.1 CDS HPSJM_07320 NC_014560.1 1477221 1477709 D COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1477221..1477709 Helicobacter pylori SJM180 9788182 YP_003929338.1 CDS HPSJM_07325 NC_014560.1 1477728 1477958 D COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator 1477728..1477958 Helicobacter pylori SJM180 9788183 YP_003929339.1 CDS HPSJM_07330 NC_014560.1 1477955 1478761 D COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1477955..1478761 Helicobacter pylori SJM180 9788184 YP_003929340.1 CDS smpB NC_014560.1 1478758 1479216 D COG0691 tmRNA-binding protein; SsrA-binding protein 1478758..1479216 Helicobacter pylori SJM180 9788185 YP_003929341.1 CDS HPSJM_07340 NC_014560.1 1479219 1479671 D COG0811 Biopolymer transport proteins; biopolymer transport protein 1479219..1479671 Helicobacter pylori SJM180 9788186 YP_003929342.1 CDS HPSJM_07345 NC_014560.1 1479682 1480083 D COG0848 Biopolymer transport protein; biopolymer transport protein 1479682..1480083 Helicobacter pylori SJM180 9788187 YP_003929343.1 CDS rpmH NC_014560.1 1480155 1480289 D COG0230 Ribosomal protein L34; 50S ribosomal protein L34 1480155..1480289 Helicobacter pylori SJM180 9788188 YP_003929344.1 CDS HPSJM_07355 NC_014560.1 1480249 1480734 D COG0594 RNase P protein component; ribonuclease P protein component 1480249..1480734 Helicobacter pylori SJM180 9788189 YP_003929345.1 CDS HPSJM_07360 NC_014560.1 1480721 1481074 D COG0759 Uncharacterized conserved protein; hypothetical protein 1480721..1481074 Helicobacter pylori SJM180 9788190 YP_003929346.1 CDS HPSJM_07365 NC_014560.1 1481080 1482726 D COG0706 Preprotein translocase subunit YidC; putative inner membrane protein translocase component YidC 1481080..1482726 Helicobacter pylori SJM180 9788191 YP_003929347.1 CDS HPSJM_07370 NC_014560.1 1482726 1483523 D COG1315 Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain; hypothetical protein 1482726..1483523 Helicobacter pylori SJM180 9788192 YP_003929348.1 CDS trmE NC_014560.1 1483516 1484868 D COG0486 Predicted GTPase; tRNA modification GTPase TrmE 1483516..1484868 Helicobacter pylori SJM180 9788193 YP_003929349.1 CDS HPSJM_07380 NC_014560.1 1485070 1487328 D outer membrane protein HomD 1485070..1487328 Helicobacter pylori SJM180 9788194 YP_003929350.1 CDS HPSJM_07385 NC_014560.1 1487376 1487534 R hypothetical protein complement(1487376..1487534) Helicobacter pylori SJM180 9788195 YP_003929351.1 CDS HPSJM_07390 NC_014560.1 1487914 1488825 R hypothetical protein complement(1487914..1488825) Helicobacter pylori SJM180 9788196 YP_003929352.1 CDS HPSJM_07395 NC_014560.1 1488835 1489176 R COG0481 Membrane GTPase LepA; hypothetical protein complement(1488835..1489176) Helicobacter pylori SJM180 9788197 YP_003929353.1 CDS HPSJM_07400 NC_014560.1 1489184 1489711 R membrane-associated lipoprotein complement(1489184..1489711) Helicobacter pylori SJM180 9788198 YP_003929354.1 CDS HPSJM_07405 NC_014560.1 1489735 1490367 R hypothetical protein complement(1489735..1490367) Helicobacter pylori SJM180 9788199 YP_003929355.1 CDS HPSJM_07410 NC_014560.1 1490729 1491043 R COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin complement(1490729..1491043) Helicobacter pylori SJM180 9788200 YP_003929356.1 CDS HPSJM_07415 NC_014560.1 1491099 1491872 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B complement(1491099..1491872) Helicobacter pylori SJM180 9788201 YP_003929357.1 CDS dnaE NC_014560.1 1491869 1495504 R COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha complement(1491869..1495504) Helicobacter pylori SJM180 9788202 YP_003929358.1 CDS HPSJM_07425 NC_014560.1 1495653 1496705 D COG1858 Cytochrome c peroxidase; cytochrome c551 peroxidase 1495653..1496705 Helicobacter pylori SJM180 9788203 YP_003929359.1 CDS HPSJM_07430 NC_014560.1 1496804 1498066 R COG3440 Predicted restriction endonuclease; hypothetical protein complement(1496804..1498066) Helicobacter pylori SJM180 9788204 YP_003929360.1 CDS HPSJM_07435 NC_014560.1 1498069 1499022 R COG0270 Site-specific DNA methylase; DNA (cytosine-5-)-methyltransferase complement(1498069..1499022) Helicobacter pylori SJM180 9788205 YP_003929361.1 CDS HPSJM_07440 NC_014560.1 1499022 1500128 R COG0270 Site-specific DNA methylase; DNA-cytosine methyltransferase complement(1499022..1500128) Helicobacter pylori SJM180 9788206 YP_003929362.1 CDS HPSJM_07445 NC_014560.1 1500128 1500439 R COG3636 Predicted transcriptional regulator; addiction module antidote protein complement(1500128..1500439) Helicobacter pylori SJM180 9788207 YP_003929363.1 CDS HPSJM_07450 NC_014560.1 1500659 1501246 R COG3187 Heat shock protein; putative secreted motility protein complement(1500659..1501246) Helicobacter pylori SJM180 9788208 YP_003929364.1 CDS HPSJM_07455 NC_014560.1 1501265 1501942 R hypothetical protein complement(1501265..1501942) Helicobacter pylori SJM180 9788209 YP_003929365.1 CDS HPSJM_07460 NC_014560.1 1501945 1502760 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transport system substrate binding protein complement(1501945..1502760) Helicobacter pylori SJM180 9788210 YP_003929366.1 CDS HPSJM_07465 NC_014560.1 1502745 1503530 R COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein complement(1502745..1503530) Helicobacter pylori SJM180 9788211 YP_003929367.1 CDS HPSJM_07470 NC_014560.1 1503530 1504663 R COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; putative ABC transport system permease protein complement(1503530..1504663) Helicobacter pylori SJM180 9788212 YP_003929368.1 CDS HPSJM_07475 NC_014560.1 1504685 1504813 R hypothetical protein complement(1504685..1504813) Helicobacter pylori SJM180 9788213 YP_003929369.1 CDS HPSJM_07480 NC_014560.1 1504797 1505492 D putative outer membrane protein; putative signal peptide 1504797..1505492 Helicobacter pylori SJM180 9788214 YP_003929370.1 CDS HPSJM_07485 NC_014560.1 1505497 1506519 R COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase complement(1505497..1506519) Helicobacter pylori SJM180 9788215 YP_003929371.1 CDS HPSJM_07490 NC_014560.1 1506571 1507317 R outer membrane protein complement(1506571..1507317) Helicobacter pylori SJM180 9788216 YP_003929372.1 CDS HPSJM_07495 NC_014560.1 1507433 1510126 R COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I complement(1507433..1510126) Helicobacter pylori SJM180 9788217 YP_003929373.1 CDS HPSJM_07500 NC_014560.1 1510195 1511409 R type II restriction enzyme complement(1510195..1511409) Helicobacter pylori SJM180 9788218 YP_003929374.1 CDS HPSJM_07505 NC_014560.1 1511406 1513445 R COG0286 Type I restriction-modification system methyltransferase subunit; restriction enzyme BcgI alpha chain-like protein complement(1511406..1513445) Helicobacter pylori SJM180 9788219 YP_003929375.1 CDS HPSJM_07510 NC_014560.1 1513479 1514054 R hypothetical protein complement(1513479..1514054) Helicobacter pylori SJM180 9788220 YP_003929376.1 CDS tmk NC_014560.1 1514042 1514617 R COG0125 Thymidylate kinase; thymidylate kinase complement(1514042..1514617) Helicobacter pylori SJM180 9788221 YP_003929377.1 CDS coaD NC_014560.1 1514619 1515092 R COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase complement(1514619..1515092) Helicobacter pylori SJM180 9788222 YP_003929378.1 CDS HPSJM_07525 NC_014560.1 1515092 1515655 R COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1515092..1515655) Helicobacter pylori SJM180 9788223 YP_003929379.1 CDS HPSJM_07530 NC_014560.1 1515636 1515740 D hypothetical protein 1515636..1515740 Helicobacter pylori SJM180 9788224 YP_003929380.1 CDS flgA NC_014560.1 1515665 1516321 R COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA complement(1515665..1516321) Helicobacter pylori SJM180 9788225 YP_003929381.1 CDS HPSJM_07540 NC_014560.1 1516318 1518363 R COG0210 Superfamily I DNA and RNA helicases; putative ATP-dependent DNA helicase complement(1516318..1518363) Helicobacter pylori SJM180 9788226 YP_003929382.1 CDS HPSJM_07545 NC_014560.1 1518363 1520897 R COG0457 FOG: TPR repeat; hypothetical protein complement(1518363..1520897) Helicobacter pylori SJM180 9788227 YP_003929383.1 CDS HPSJM_07550 NC_014560.1 1520907 1522154 R COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase complement(1520907..1522154) Helicobacter pylori SJM180 9788228 YP_003929384.1 CDS HPSJM_07555 NC_014560.1 1522155 1522952 R COG0388 Predicted amidohydrolase; hypothetical protein complement(1522155..1522952) Helicobacter pylori SJM180 9788229 YP_003929385.1 CDS HPSJM_07560 NC_014560.1 1522956 1523216 R COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(1522956..1523216) Helicobacter pylori SJM180 9788230 YP_003929386.1 CDS ubiE NC_014560.1 1523226 1523966 R COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase complement(1523226..1523966) Helicobacter pylori SJM180 9788231 YP_003929387.1 CDS HPSJM_07570 NC_014560.1 1523993 1524439 R COG1981 Predicted membrane protein; hypothetical protein complement(1523993..1524439) Helicobacter pylori SJM180 9788232 YP_003929388.1 CDS HPSJM_07575 NC_014560.1 1524450 1525022 R COG1739 Uncharacterized conserved protein; X-Pro dipeptidase complement(1524450..1525022) Helicobacter pylori SJM180 9788233 YP_003929389.1 CDS HPSJM_07580 NC_014560.1 1525009 1526139 R COG0842 ABC-type multidrug transport system, permease component; antibiotic transport system permease protein complement(1525009..1526139) Helicobacter pylori SJM180 9788234 YP_003929390.1 CDS HPSJM_07585 NC_014560.1 1526136 1527233 R COG0842 ABC-type multidrug transport system, permease component; ABC-2 type transport system permease protein complement(1526136..1527233) Helicobacter pylori SJM180 9788235 YP_003929391.1 CDS HPSJM_07590 NC_014560.1 1527245 1528234 R COG0845 Membrane-fusion protein; hypothetical protein complement(1527245..1528234) Helicobacter pylori SJM180 9788236 YP_003929392.1 CDS HPSJM_07595 NC_014560.1 1528246 1529778 R COG1538 Outer membrane protein; lipase-like protein complement(1528246..1529778) Helicobacter pylori SJM180 9788237 YP_003929393.1 CDS HPSJM_07600 NC_014560.1 1529775 1531124 R COG1253 Hemolysins and related proteins containing CBS domains; hypothetical protein complement(1529775..1531124) Helicobacter pylori SJM180 9788238 YP_003929394.1 CDS HPSJM_07605 NC_014560.1 1531221 1532822 R COG0306 Phosphate/sulphate permeases; Transporter; putative phosphate transporter; putative membrane protein; putative signal peptide complement(1531221..1532822) Helicobacter pylori SJM180 9788239 YP_003929395.1 CDS HPSJM_07610 NC_014560.1 1532963 1533232 D COG0694 Thioredoxin-like proteins and domains; putative nifU-like protein 1532963..1533232 Helicobacter pylori SJM180 9788240 YP_003929396.1 CDS HPSJM_07615 NC_014560.1 1533245 1533856 D hypothetical protein 1533245..1533856 Helicobacter pylori SJM180 9788241 YP_003929397.1 CDS murE NC_014560.1 1533860 1535203 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1533860..1535203 Helicobacter pylori SJM180 9788242 YP_003929398.1 CDS HPSJM_07625 NC_014560.1 1535207 1536157 D COG0176 Transaldolase; transaldolase 1535207..1536157 Helicobacter pylori SJM180 9788243 YP_003929399.1 CDS HPSJM_07630 NC_014560.1 1536212 1536748 D COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25/general stress protein Ctc 1536212..1536748 Helicobacter pylori SJM180 9788244 YP_003929400.1 CDS HPSJM_07635 NC_014560.1 1536758 1537318 D COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1536758..1537318 Helicobacter pylori SJM180 9788245 YP_003929401.1 CDS HPSJM_07640 NC_014560.1 1537328 1538395 D COG0795 Predicted permeases; hypothetical protein 1537328..1538395 Helicobacter pylori SJM180 9788246 YP_003929402.1 CDS HPSJM_07645 NC_014560.1 1538452 1539453 D COG3392 Adenine-specific DNA methylase; type II methylase 1538452..1539453 Helicobacter pylori SJM180 9788247 YP_003929403.1 CDS HPSJM_07650 NC_014560.1 1539504 1540349 D COG0338 Site-specific DNA methylase; DNA adenine methylase 1539504..1540349 Helicobacter pylori SJM180 9788248 YP_003929404.1 CDS HPSJM_07655 NC_014560.1 1540356 1541969 D COG0051 Ribosomal protein S10; restriction endonuclease 1540356..1541969 Helicobacter pylori SJM180 9788249 YP_003929405.1 CDS HPSJM_07660 NC_014560.1 1542015 1543181 R outer membrane protein (omp32) complement(1542015..1543181) Helicobacter pylori SJM180 9788250 YP_003929406.1 CDS HPSJM_07665 NC_014560.1 1543360 1543797 D COG3399 Uncharacterized protein conserved in bacteria; hypothetical protein 1543360..1543797 Helicobacter pylori SJM180 9788251 YP_003929407.1 CDS HPSJM_07670 NC_014560.1 1543794 1546145 R COG2217 Cation transport ATPase; putative component of cation transport for cbb3-type oxidase complement(1543794..1546145) Helicobacter pylori SJM180 9788252 YP_003929408.1 CDS HPSJM_07675 NC_014560.1 1546171 1546887 R COG4123 Predicted O-methyltransferase; hypothetical protein complement(1546171..1546887) Helicobacter pylori SJM180 9788253 YP_003929409.1 CDS HPSJM_07680 NC_014560.1 1546869 1547903 R COG0117 Pyrimidine deaminase; riboflavin biosynthesis protein (ribG) complement(1546869..1547903) Helicobacter pylori SJM180 9788254 YP_003929410.1 CDS HPSJM_07685 NC_014560.1 1547900 1549126 R COG0786 Na+/glutamate symporter; Sodium/glutamate symporter complement(1547900..1549126) Helicobacter pylori SJM180 9788255 YP_003929411.1 CDS HPSJM_07690 NC_014560.1 1549212 1550411 D COG1748 Saccharopine dehydrogenase and related proteins; saccharopine dehydrogenase 1549212..1550411 Helicobacter pylori SJM180 9788256 YP_003929412.1 CDS HPSJM_07695 NC_014560.1 1550421 1551797 R COG0348 Polyferredoxin; ferrodoxin-like protein complement(1550421..1551797) Helicobacter pylori SJM180 9788257 YP_003929413.1 CDS HPSJM_07700 NC_014560.1 1551777 1552565 D COG0344 Predicted membrane protein; putative glycerol-3-phosphate acyltransferase PlsY 1551777..1552565 Helicobacter pylori SJM180 9788258 YP_003929414.1 CDS HPSJM_07705 NC_014560.1 1552562 1552915 D COG1539 Dihydroneopterin aldolase; dihydroneopterin aldolase 1552562..1552915 Helicobacter pylori SJM180 9788259 YP_003929415.1 CDS HPSJM_07710 NC_014560.1 1552899 1553201 D hypothetical protein 1552899..1553201 Helicobacter pylori SJM180 9788260 YP_003929416.1 CDS HPSJM_07715 NC_014560.1 1553378 1555969 D COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 1553378..1555969 Helicobacter pylori SJM180 9788261 YP_003929417.1 CDS HPSJM_07720 NC_014560.1 1556198 1557358 D COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 1556198..1557358 Helicobacter pylori SJM180 9788262 YP_003929418.1 CDS nusA NC_014560.1 1557453 1558640 D COG0195 Transcription elongation factor; transcription elongation factor NusA 1557453..1558640 Helicobacter pylori SJM180 9788263 YP_003929419.1 CDS HPSJM_07730 NC_014560.1 1558836 1559528 R hypothetical protein complement(1558836..1559528) Helicobacter pylori SJM180 9788264 YP_003929420.1 CDS HPSJM_07735 NC_014560.1 1559589 1560026 R COG3600 Uncharacterized phage-associated protein; phage-associated protein complement(1559589..1560026) Helicobacter pylori SJM180 9788265 YP_003929421.1 CDS HPSJM_07740 NC_014560.1 1560251 1561879 R COG3344 Retron-type reverse transcriptase; hypothetical protein complement(1560251..1561879) Helicobacter pylori SJM180 9788266 YP_003929422.1 CDS HPSJM_07745 NC_014560.1 1561879 1561971 R hypothetical protein complement(1561879..1561971) Helicobacter pylori SJM180 9788267 YP_003929423.1 CDS HPSJM_07750 NC_014560.1 1562596 1566354 R COG1002 Type II restriction enzyme, methylase subunits; type IIS restriction-modification protein complement(1562596..1566354) Helicobacter pylori SJM180 9788268 YP_003929424.1 CDS HPSJM_07765 NC_014560.1 1569372 1569965 R COG2189 Adenine specific DNA methylase Mod; type III R-M system modification enzyme complement(1569372..1569965) Helicobacter pylori SJM180 9788269 YP_003929425.1 CDS HPSJM_07770 NC_014560.1 1569962 1571341 R COG2189 Adenine specific DNA methylase Mod; type III R-M system modification enzyme complement(1569962..1571341) Helicobacter pylori SJM180 9788270 YP_003929426.1 CDS HPSJM_07775 NC_014560.1 1571383 1573254 R COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG complement(1571383..1573254) Helicobacter pylori SJM180 9788271 YP_003929427.1 CDS HPSJM_07780 NC_014560.1 1573336 1573683 D hypothetical protein 1573336..1573683 Helicobacter pylori SJM180 9788272 YP_003929428.1 CDS HPSJM_07785 NC_014560.1 1573687 1574322 D hypothetical protein 1573687..1574322 Helicobacter pylori SJM180 9788273 YP_003929429.1 CDS HPSJM_07790 NC_014560.1 1574319 1575071 R COG0708 Exonuclease III; exodeoxyribonuclease III complement(1574319..1575071) Helicobacter pylori SJM180 9788274 YP_003929430.1 CDS HPSJM_07795 NC_014560.1 1575251 1576690 R hypothetical protein complement(1575251..1576690) Helicobacter pylori SJM180 9788276 YP_003929431.1 CDS dnaA NC_014560.1 1576919 1578286 R COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein complement(1576919..1578286) Helicobacter pylori SJM180 9788277 YP_003929432.1 CDS HPSJM_07805 NC_014560.1 1578440 1578982 D COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase (punB) 1578440..1578982 Helicobacter pylori SJM180 9788278 YP_003929433.1 CDS HPSJM_07810 NC_014560.1 1579027 1579266 D hypothetical protein 1579027..1579266 Helicobacter pylori SJM180 9788279 YP_003929434.1 CDS HPSJM_07815 NC_014560.1 1579267 1581060 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 1579267..1581060 Helicobacter pylori SJM180 9788280 YP_003929435.1 CDS thyX NC_014560.1 1581084 1581710 D COG1351 Predicted alternative thymidylate synthase; FAD-dependent thymidylate synthase 1581084..1581710 Helicobacter pylori SJM180 9788281 YP_003929436.1 CDS HPSJM_07825 NC_014560.1 1581732 1581881 R hypothetical protein complement(1581732..1581881) Helicobacter pylori SJM180 9788282 YP_003929437.1 CDS HPSJM_07830 NC_014560.1 1582042 1583244 R COG0732 Restriction endonuclease S subunits; restriction modification system DNA specificity domain protein complement(1582042..1583244) Helicobacter pylori SJM180 9788283 YP_003929438.1 CDS HPSJM_07845 NC_014560.1 1585775 1588750 D COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; typeI restriction enzyme R protein 1585775..1588750 Helicobacter pylori SJM180 9788284 YP_003929439.1 CDS HPSJM_07850 NC_014560.1 1588750 1589457 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 1588750..1589457 Helicobacter pylori SJM180 9788285 YP_003929440.1 CDS HPSJM_07855 NC_014560.1 1589547 1592072 R COG4772 Outer membrane receptor for Fe3+-dicitrate; iron(III) dicitrate transport protein (fecA) complement(1589547..1592072) Helicobacter pylori SJM180 9788286 YP_003929441.1 CDS HPSJM_07860 NC_014560.1 1592614 1593582 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; arginase complement(1592614..1593582) Helicobacter pylori SJM180 9788287 YP_003929442.1 CDS HPSJM_07865 NC_014560.1 1593785 1594927 D COG0686 Alanine dehydrogenase; alanine dehydrogenase 1593785..1594927 Helicobacter pylori SJM180 9788288 YP_003929443.1 CDS HPSJM_07870 NC_014560.1 1595047 1596786 D COG1479 Uncharacterized conserved protein; hypothetical protein 1595047..1596786 Helicobacter pylori SJM180 9788289 YP_003929444.1 CDS HPSJM_07875 NC_014560.1 1596797 1597525 R outer membrane protein complement(1596797..1597525) Helicobacter pylori SJM180 9788290 YP_003929445.1 CDS HPSJM_07880 NC_014560.1 1597522 1597689 R hypothetical protein complement(1597522..1597689) Helicobacter pylori SJM180 9788291 YP_003929446.1 CDS HPSJM_07885 NC_014560.1 1597711 1598565 D COG0061 Predicted sugar kinase; probable inorganic polyphosphate/ATP-NAD kinase 1597711..1598565 Helicobacter pylori SJM180 9788292 YP_003929447.1 CDS HPSJM_07890 NC_014560.1 1598588 1600162 D COG0497 ATPase involved in DNA repair; DNA repair protein RecN 1598588..1600162 Helicobacter pylori SJM180 9788293 YP_003929448.1 CDS HPSJM_07895 NC_014560.1 1600159 1601466 D COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; putative fibronectin/fibrinogen-binding protein 1600159..1601466 Helicobacter pylori SJM180 9788294 YP_003929449.1 CDS HPSJM_07900 NC_014560.1 1601485 1601781 D hypothetical protein 1601485..1601781 Helicobacter pylori SJM180 9788295 YP_003929450.1 CDS HPSJM_07905 NC_014560.1 1602105 1602221 D hypothetical protein 1602105..1602221 Helicobacter pylori SJM180 9788296 YP_003929451.1 CDS HPSJM_07910 NC_014560.1 1602279 1602377 D hypothetical protein 1602279..1602377 Helicobacter pylori SJM180 9788297 YP_003929452.1 CDS HPSJM_07915 NC_014560.1 1602364 1603593 D COG0675 Transposase and inactivated derivatives; Transposase, OrfB, ISHp609 1602364..1603593 Helicobacter pylori SJM180 9788298 YP_003929453.1 CDS HPSJM_07920 NC_014560.1 1603796 1604659 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon complement(1603796..1604659) Helicobacter pylori SJM180 9788299 YP_003929454.1 CDS HPSJM_07925 NC_014560.1 1604637 1605290 R COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(1604637..1605290) Helicobacter pylori SJM180 9788300 YP_003929455.1 CDS HPSJM_07930 NC_014560.1 1605361 1606233 D COG0158 Fructose-1, 6-bisphosphatase; fructose-1, 6-bisphosphatase 1605361..1606233 Helicobacter pylori SJM180 9788301 YP_003929456.1 CDS HPSJM_07935 NC_014560.1 1606233 1606436 D hypothetical protein 1606233..1606436 Helicobacter pylori SJM180 9788302 YP_003929457.1 CDS HPSJM_07940 NC_014560.1 1606449 1607345 D COG0827 Adenine-specific DNA methylase; putative type II methylase protein 1606449..1607345 Helicobacter pylori SJM180 9788303 YP_003929458.1 CDS HPSJM_07955 NC_014560.1 1608189 1609046 R COG2857 Cytochrome c1; Ubiquinol cytochrome c oxidoreductase, cytochrome c subunit complement(1608189..1609046) Helicobacter pylori SJM180 9788304 YP_003929459.1 CDS HPSJM_07960 NC_014560.1 1609043 1610281 R COG1290 Cytochrome b subunit of the bc complex; Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit; putative membrane protein complement(1609043..1610281) Helicobacter pylori SJM180 9788305 YP_003929460.1 CDS HPSJM_07965 NC_014560.1 1610292 1610795 R COG0723 Rieske Fe-S protein; ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) complement(1610292..1610795) Helicobacter pylori SJM180 9788306 YP_003929461.1 CDS HPSJM_07970 NC_014560.1 1610920 1613919 R COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor complement(1610920..1613919) Helicobacter pylori SJM180 9788307 YP_003929462.1 CDS HPSJM_07975 NC_014560.1 1613923 1614333 R COG1664 Integral membrane protein CcmA involved in cell shape determination; hypothetical protein complement(1613923..1614333) Helicobacter pylori SJM180 9788308 YP_003929463.1 CDS HPSJM_07980 NC_014560.1 1614252 1615190 R COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein complement(1614252..1615190) Helicobacter pylori SJM180 9788309 YP_003929464.1 CDS HPSJM_07985 NC_014560.1 1615200 1616126 R COG0739 Membrane proteins related to metalloendopeptidases; hypothetical protein complement(1615200..1616126) Helicobacter pylori SJM180 9788310 YP_003929465.1 CDS HPSJM_07990 NC_014560.1 1616126 1617295 R COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase complement(1616126..1617295) Helicobacter pylori SJM180 9788311 YP_003929466.1 CDS HPSJM_07995 NC_014560.1 1617285 1617797 R hypothetical protein complement(1617285..1617797) Helicobacter pylori SJM180 9788312 YP_003929467.1 CDS leuS NC_014560.1 1617794 1620214 R COG0495 Leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(1617794..1620214) Helicobacter pylori SJM180 9788313 YP_003929468.1 CDS HPSJM_08005 NC_014560.1 1620224 1620562 R integral membrane protein complement(1620224..1620562) Helicobacter pylori SJM180 9788314 YP_003929469.1 CDS secF NC_014560.1 1620572 1621543 R COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF complement(1620572..1621543) Helicobacter pylori SJM180 9788315 YP_003929470.1 CDS secD NC_014560.1 1621552 1623132 R COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD complement(1621552..1623132) Helicobacter pylori SJM180 9788316 YP_003929471.1 CDS yajC NC_014560.1 1623129 1623512 R COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC complement(1623129..1623512) Helicobacter pylori SJM180 9788317 YP_003929472.1 CDS HPSJM_08025 NC_014560.1 1623560 1624876 R COG3004 Na+/H+ antiporter; Na(+)/H(+) antiporter nhaA complement(1623560..1624876) Helicobacter pylori SJM180 9788318 YP_003929473.1 CDS HPSJM_08030 NC_014560.1 1624900 1627761 R COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); putative recombination protein RecB complement(1624900..1627761) Helicobacter pylori SJM180 9788319 YP_003929474.1 CDS rpsB NC_014560.1 1628012 1628806 D COG0052 Ribosomal protein S2; 30S ribosomal protein S2 1628012..1628806 Helicobacter pylori SJM180 9788320 YP_003929475.1 CDS tsf NC_014560.1 1628806 1629873 D COG0264 Translation elongation factor Ts; elongation factor Ts 1628806..1629873 Helicobacter pylori SJM180 9788321 YP_003929476.1 CDS HPSJM_08045 NC_014560.1 1630320 1632167 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; cell division protein complement(1630320..1632167) Helicobacter pylori SJM180 9788322 YP_003929477.1 CDS fliE NC_014560.1 1632323 1632652 R COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE complement(1632323..1632652) Helicobacter pylori SJM180 9788323 YP_003929478.1 CDS flgC NC_014560.1 1632779 1633264 R COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC complement(1632779..1633264) Helicobacter pylori SJM180 9788324 YP_003929479.1 CDS flgB NC_014560.1 1633277 1633699 R COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB complement(1633277..1633699) Helicobacter pylori SJM180 9788325 YP_003929480.1 CDS HPSJM_08065 NC_014560.1 1633904 1635070 D COG0772 Bacterial cell division membrane protein; probable cell division protein ftsW 1633904..1635070 Helicobacter pylori SJM180 9788326 YP_003929481.1 CDS HPSJM_08070 NC_014560.1 1635094 1636098 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron(III) ABC transporter periplasmic iron-binding protein complement(1635094..1636098) Helicobacter pylori SJM180 9788327 YP_003929482.1 CDS HPSJM_08075 NC_014560.1 1636337 1636933 D COG0450 Peroxiredoxin; alkyl hydroperoxide reductase 1636337..1636933 Helicobacter pylori SJM180 9788328 YP_003929483.1 CDS HPSJM_08080 NC_014560.1 1637079 1637894 D COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; outer membrane protein 1637079..1637894 Helicobacter pylori SJM180 9788329 YP_003929484.1 CDS HPSJM_08085 NC_014560.1 1637965 1638141 D hypothetical protein 1637965..1638141 Helicobacter pylori SJM180 9788330 YP_003929485.1 CDS HPSJM_08090 NC_014560.1 1638386 1640152 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 complement(1638386..1640152) Helicobacter pylori SJM180 9788331 YP_003929486.1 CDS HPSJM_08095 NC_014560.1 1640133 1640576 R hypothetical protein complement(1640133..1640576) Helicobacter pylori SJM180 9788332 YP_003929487.1 CDS engB NC_014560.1 1640588 1641214 R COG0218 Predicted GTPase; ribosome biogenesis GTP-binding protein YsxC complement(1640588..1641214) Helicobacter pylori SJM180 9788333 YP_003929488.1 CDS HPSJM_08105 NC_014560.1 1641211 1641768 R COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1641211..1641768) Helicobacter pylori SJM180 9788334 YP_003929489.1 CDS HPSJM_08110 NC_014560.1 1641768 1642361 R hypothetical protein complement(1641768..1642361) Helicobacter pylori SJM180 9788335 YP_003929490.1 CDS HPSJM_08115 NC_014560.1 1642336 1642830 R COG1778 Low specificity phosphatase (HAD superfamily); 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) complement(1642336..1642830) Helicobacter pylori SJM180 9788336 YP_003929491.1 CDS HPSJM_08120 NC_014560.1 1642827 1643771 R COG0797 Lipoproteins; rare lipoprotein A complement(1642827..1643771) Helicobacter pylori SJM180 9788337 YP_003929492.1 CDS HPSJM_08125 NC_014560.1 1643771 1644883 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); putative regulatory protein complement(1643771..1644883) Helicobacter pylori SJM180 9788338 YP_003929493.1 CDS HPSJM_08130 NC_014560.1 1644979 1645743 R COG0084 Mg-dependent DNase; Deoxyribonuclease complement(1644979..1645743) Helicobacter pylori SJM180 9788339 YP_003929494.1 CDS HPSJM_08135 NC_014560.1 1645819 1646439 D COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 1645819..1646439 Helicobacter pylori SJM180 9788340 YP_003929495.1 CDS HPSJM_08140 NC_014560.1 1646440 1646712 D COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; ABC transporter, putative 1646440..1646712 Helicobacter pylori SJM180 9788341 YP_003929496.1 CDS HPSJM_08145 NC_014560.1 1646734 1647717 D COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 1646734..1647717 Helicobacter pylori SJM180 9788342 YP_003929497.1 CDS HPSJM_08150 NC_014560.1 1647719 1648366 D COG2011 ABC-type metal ion transport system, permease component; ABC-type transport system, permease; putative D-and L-methionine transport protein; putative membrane protein 1647719..1648366 Helicobacter pylori SJM180 9788343 YP_003929498.1 CDS HPSJM_08155 NC_014560.1 1648552 1648983 R hypothetical protein complement(1648552..1648983) Helicobacter pylori SJM180 9788344 YP_003929499.1 CDS HPSJM_08160 NC_014560.1 1648993 1649589 R COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein complement(1648993..1649589) Helicobacter pylori SJM180 9788345 YP_003929500.1 CDS HPSJM_08165 NC_014560.1 1649589 1650596 R COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase) complement(1649589..1650596) Helicobacter pylori SJM180 9788346 YP_003929501.1 CDS HPSJM_08170 NC_014560.1 1650732 1651520 D COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 1650732..1651520 Helicobacter pylori SJM180 9788347 YP_003929502.1 CDS pdxA NC_014560.1 1651522 1652445 D COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 1651522..1652445 Helicobacter pylori SJM180 9788348 YP_003929503.1 CDS HPSJM_08180 NC_014560.1 1652510 1653532 D COG0533 Metal-dependent proteases with possible chaperone activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1652510..1653532 Helicobacter pylori SJM180 9788349 YP_003929504.1 CDS flgG NC_014560.1 1653709 1654497 D flagellar basal body rod protein FlgG 1653709..1654497 Helicobacter pylori SJM180 9788350 YP_003929505.1 CDS HPSJM_08190 NC_014560.1 1654494 1654592 R COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG complement(1654494..1654592) Helicobacter pylori SJM180 9788351 YP_003929506.1 CDS HPSJM_08205 NC_014560.1 1655405 1655524 R hypothetical protein complement(1655405..1655524) Helicobacter pylori SJM180 9788352 YP_003929507.1 CDS HPSJM_08210 NC_014560.1 1655897 1656037 R hypothetical protein complement(1655897..1656037) Helicobacter pylori SJM180 9788353 YP_003929508.1 CDS HPSJM_08215 NC_014560.1 1656121 1656882 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1656121..1656882) Helicobacter pylori SJM180 9788354 YP_003929509.1 CDS HPSJM_08220 NC_014560.1 1657142 1657660 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1657142..1657660) Helicobacter pylori SJM180 9788355 YP_003929510.1 CDS HPSJM_08225 NC_014560.1 1657654 1657887 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1657654..1657887) Helicobacter pylori SJM180 9788356 HPSJM_t08232 tRNA HPSJM_t08232 NC_014560.1 4041 4116 R tRNA-Glu complement(4041..4116) Helicobacter pylori SJM180 9786740 HPSJM_t08234 tRNA HPSJM_t08234 NC_014560.1 4179 4255 R tRNA-Asp complement(4179..4255) Helicobacter pylori SJM180 9786741 HPSJM_t08236 tRNA HPSJM_t08236 NC_014560.1 4296 4371 R tRNA-Val complement(4296..4371) Helicobacter pylori SJM180 9786742 HPSJM_t08238 tRNA HPSJM_t08238 NC_014560.1 4413 4487 R tRNA-Glu complement(4413..4487) Helicobacter pylori SJM180 9786743 HPSJM_t08240 tRNA HPSJM_t08240 NC_014560.1 4498 4573 R tRNA-Lys complement(4498..4573) Helicobacter pylori SJM180 9786744 HPSJM_t08242 tRNA HPSJM_t08242 NC_014560.1 78790 78865 R tRNA-Val complement(78790..78865) Helicobacter pylori SJM180 9786814 HPSJM_t08244 tRNA HPSJM_t08244 NC_014560.1 97117 97208 D tRNA-Ser 97117..97208 Helicobacter pylori SJM180 9786832 HPSJM_t08246 tRNA HPSJM_t08246 NC_014560.1 240693 240767 R tRNA-Asn complement(240693..240767) Helicobacter pylori SJM180 9786978 HPSJM_t08248 tRNA HPSJM_t08248 NC_014560.1 263703 263778 R tRNA-Ala complement(263703..263778) Helicobacter pylori SJM180 9787002 HPSJM_t08250 tRNA HPSJM_t08250 NC_014560.1 345904 345980 D tRNA-Arg 345904..345980 Helicobacter pylori SJM180 9787080 HPSJM_t08252 tRNA HPSJM_t08252 NC_014560.1 395642 395729 R tRNA-Ser complement(395642..395729) Helicobacter pylori SJM180 9787131 HPSJM_t08254 tRNA HPSJM_t08254 NC_014560.1 448949 449026 R tRNA-Pro complement(448949..449026) Helicobacter pylori SJM180 9787189 HPSJM_t08256 tRNA HPSJM_t08256 NC_014560.1 766989 767065 R tRNA-Met complement(766989..767065) Helicobacter pylori SJM180 9787476 HPSJM_t08258 tRNA HPSJM_t08258 NC_014560.1 858726 858802 D tRNA-Arg 858726..858802 Helicobacter pylori SJM180 9787573 HPSJM_t08260 tRNA HPSJM_t08260 NC_014560.1 919711 919787 R tRNA-Met complement(919711..919787) Helicobacter pylori SJM180 9787633 HPSJM_t08262 tRNA HPSJM_t08262 NC_014560.1 919813 919887 R tRNA-Gln complement(919813..919887) Helicobacter pylori SJM180 9787634 HPSJM_t08264 tRNA HPSJM_t08264 NC_014560.1 977966 978040 D tRNA-Gly 977966..978040 Helicobacter pylori SJM180 9787681 HPSJM_t08266 tRNA HPSJM_t08266 NC_014560.1 978082 978168 D tRNA-Leu 978082..978168 Helicobacter pylori SJM180 9787682 HPSJM_t08268 tRNA HPSJM_t08268 NC_014560.1 978242 978316 D tRNA-Cys 978242..978316 Helicobacter pylori SJM180 9787683 HPSJM_t08270 tRNA HPSJM_t08270 NC_014560.1 978364 978451 D tRNA-Ser 978364..978451 Helicobacter pylori SJM180 9787684 HPSJM_t08272 tRNA HPSJM_t08272 NC_014560.1 1040989 1041065 R tRNA-Arg complement(1040989..1041065) Helicobacter pylori SJM180 9787740 HPSJM_t08274 tRNA HPSJM_t08274 NC_014560.1 1041087 1041163 R tRNA-Arg complement(1041087..1041163) Helicobacter pylori SJM180 9787741 HPSJM_t08276 tRNA HPSJM_t08276 NC_014560.1 1041223 1041299 R tRNA-His complement(1041223..1041299) Helicobacter pylori SJM180 9787742 HPSJM_t08278 tRNA HPSJM_t08278 NC_014560.1 1041367 1041444 R tRNA-Pro complement(1041367..1041444) Helicobacter pylori SJM180 9787743 HPSJM_t08280 tRNA HPSJM_t08280 NC_014560.1 1091402 1091486 R tRNA-Leu complement(1091402..1091486) Helicobacter pylori SJM180 9787790 HPSJM_t08282 tRNA HPSJM_t08282 NC_014560.1 1096271 1096347 D tRNA-Ile 1096271..1096347 Helicobacter pylori SJM180 9787796 HPSJM_t08284 tRNA HPSJM_t08284 NC_014560.1 1096363 1096438 D tRNA-Ala 1096363..1096438 Helicobacter pylori SJM180 9787797 HPSJM_t08286 tRNA HPSJM_t08286 NC_014560.1 1192322 1192399 R tRNA-Met complement(1192322..1192399) Helicobacter pylori SJM180 9787893 HPSJM_t08288 tRNA HPSJM_t08288 NC_014560.1 1223577 1223652 R tRNA-Trp complement(1223577..1223652) Helicobacter pylori SJM180 9787920 HPSJM_t08290 tRNA HPSJM_t08290 NC_014560.1 1225210 1225284 R tRNA-Thr complement(1225210..1225284) Helicobacter pylori SJM180 9787923 HPSJM_t08292 tRNA HPSJM_t08292 NC_014560.1 1225315 1225391 R tRNA-Gly complement(1225315..1225391) Helicobacter pylori SJM180 9787924 HPSJM_t08294 tRNA HPSJM_t08294 NC_014560.1 1225407 1225491 R tRNA-Tyr complement(1225407..1225491) Helicobacter pylori SJM180 9787925 HPSJM_t08296 tRNA HPSJM_t08296 NC_014560.1 1225519 1225594 R tRNA-Thr complement(1225519..1225594) Helicobacter pylori SJM180 9787926 HPSJM_t08298 tRNA HPSJM_t08298 NC_014560.1 1230828 1230914 R tRNA-Leu complement(1230828..1230914) Helicobacter pylori SJM180 9787932 HPSJM_t08300 tRNA HPSJM_t08300 NC_014560.1 1230967 1231053 R tRNA-Leu complement(1230967..1231053) Helicobacter pylori SJM180 9787933 HPSJM_t08302 tRNA HPSJM_t08302 NC_014560.1 1575173 1575248 D tRNA-Phe 1575173..1575248 Helicobacter pylori SJM180 9788275 HPSJM_r08304 rRNA HPSJM_r08304 NC_014560.1 1018892 1019009 R 5S ribosomal RNA complement(1018892..1019009) Helicobacter pylori SJM180 9787722 HPSJM_r08312 rRNA HPSJM_r08312 NC_014560.1 1019250 1022127 R 23S ribosomal RNA complement(1019250..1022127) Helicobacter pylori SJM180 9787723 HPSJM_r08308 rRNA HPSJM_r08308 NC_014560.1 1149791 1151298 R 16S ribosomal RNA complement(1149791..1151298) Helicobacter pylori SJM180 9787852 HPSJM_r08306 rRNA HPSJM_r08306 NC_014560.1 1440432 1440549 R 5S ribosomal RNA complement(1440432..1440549) Helicobacter pylori SJM180 9788144 HPSJM_r08314 rRNA HPSJM_r08314 NC_014560.1 1440790 1443665 R 23S ribosomal RNA complement(1440790..1443665) Helicobacter pylori SJM180 9788145 HPSJM_r08310 rRNA HPSJM_r08310 NC_014560.1 1474315 1475822 R 16S ribosomal RNA complement(1474315..1475822) Helicobacter pylori SJM180 9788180