-- dump date 20111121_012625 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_003754150.1 300021539 9389475 62..505 1 NC_014313.1 SMART: rhodanese; KEGG: pla:Plav_0002 rhodanese; rhodanese 505 9389475 Hden_0001 Hyphomicrobium denitrificans ATCC 51888 rhodanese YP_003754150.1 62 D 582899 CDS YP_003754151.1 300021540 9385876 621..2141 1 NC_014313.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: bbt:BBta_0001 chromosomal replication initiation protein; SMART: replication initiation factor DnaA; ATPase AAA; chromosomal replication initiator protein DnaA 2141 9385876 Hden_0002 Hyphomicrobium denitrificans ATCC 51888 chromosomal replication initiator protein DnaA YP_003754151.1 621 D 582899 CDS YP_003754152.1 300021541 9385877 2480..3598 1 NC_014313.1 SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III subunit beta; KEGG: nwi:Nwi_0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 3598 9385877 Hden_0003 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunit beta YP_003754152.1 2480 D 582899 CDS YP_003754153.1 300021542 9385878 3702..4091 1 NC_014313.1 KEGG: rpb:RPB_1094 hypothetical protein; manually curated; PFAM: protein of unknown function DUF559; hypothetical protein 4091 9385878 Hden_0004 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754153.1 3702 D 582899 CDS YP_003754154.1 300021543 9385879 4094..5461 1 NC_014313.1 PFAM: SMC domain protein; KEGG: mes:Meso_0003 recombination protein F; SMC domain-containing protein 5461 9385879 Hden_0005 Hyphomicrobium denitrificans ATCC 51888 SMC domain-containing protein YP_003754154.1 4094 D 582899 CDS YP_003754155.1 300021544 9385880 5608..8055 1 NC_014313.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase subunit beta; KEGG: rpe:RPE_0005 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; DNA gyrase subunit beta 8055 9385880 Hden_0006 Hyphomicrobium denitrificans ATCC 51888 DNA gyrase subunit beta YP_003754155.1 5608 D 582899 CDS YP_003754156.1 300021545 9385881 8122..9012 1 NC_014313.1 manually curated; KEGG: azc:AZC_3917 hypothetical protein; hypothetical protein 9012 9385881 Hden_0007 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754156.1 8122 D 582899 CDS YP_003754157.1 300021546 9385882 complement(9060..10850) 1 NC_014313.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: mno:Mnod_5461 sodium/hydrogen exchanger; sodium/hydrogen exchanger 10850 9385882 Hden_0008 Hyphomicrobium denitrificans ATCC 51888 sodium/hydrogen exchanger YP_003754157.1 9060 R 582899 CDS YP_003754158.1 300021547 9385883 11112..13448 1 NC_014313.1 KEGG: pla:Plav_0008 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 13448 9385883 Hden_0009 Hyphomicrobium denitrificans ATCC 51888 penicillin-binding protein, 1A family YP_003754158.1 11112 D 582899 CDS YP_003754159.1 300021548 9385884 complement(13461..14309) 1 NC_014313.1 PFAM: protein of unknown function DUF45; KEGG: azc:AZC_4690 hypothetical protein; hypothetical protein 14309 9385884 Hden_0010 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754159.1 13461 R 582899 CDS YP_003754160.1 300021549 9385885 complement(14419..15027) 1 NC_014313.1 PFAM: electron transporter SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase; electron transporter SCO1/SenC 15027 9385885 Hden_0011 Hyphomicrobium denitrificans ATCC 51888 electron transporter SCO1/SenC YP_003754160.1 14419 R 582899 CDS YP_003754161.1 300021550 9385886 15162..16565 1 NC_014313.1 KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 16565 9385886 Hden_0012 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003754161.1 15162 D 582899 CDS YP_003754162.1 300021551 9385887 16722..17288 1 NC_014313.1 KEGG: pla:Plav_0018 two component Fis family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 17288 9385887 Hden_0013 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003754162.1 16722 D 582899 CDS YP_003754163.1 300021552 9385888 complement(17323..17829) 1 NC_014313.1 PFAM: protein of unknown function DUF1052; KEGG: msl:Msil_2157 protein of unknown function DUF1052; hypothetical protein 17829 9385888 Hden_0014 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754163.1 17323 R 582899 CDS YP_003754164.1 300021553 9385889 17931..19652 1 NC_014313.1 KEGG: ade:Adeh_1447 ATP-dependent protease; ATP-dependent protease-like protein 19652 9385889 Hden_0015 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent protease-like protein YP_003754164.1 17931 D 582899 CDS YP_003754165.1 300021554 9385890 19649..20494 1 NC_014313.1 KEGG: msm:MSMEG_3091 ribose transport ATP-binding protein RbsA; hypothetical protein 20494 9385890 Hden_0016 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754165.1 19649 D 582899 CDS YP_003754166.1 300021555 9385891 complement(20499..21464) 1 NC_014313.1 PFAM: protein of unknown function DUF344; KEGG: atc:AGR_C_733 hypothetical protein; hypothetical protein 21464 9385891 Hden_0017 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754166.1 20499 R 582899 CDS YP_003754167.1 300021556 9385892 complement(21651..22205) 1 NC_014313.1 PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator; GcrA cell cycle regulator 22205 9385892 Hden_0018 Hyphomicrobium denitrificans ATCC 51888 GcrA cell cycle regulator YP_003754167.1 21651 R 582899 CDS YP_003754168.1 300021557 9385893 22867..24039 1 NC_014313.1 KEGG: azc:AZC_4028 acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 24039 9385893 Hden_0019 Hyphomicrobium denitrificans ATCC 51888 acetylornithine and succinylornithine aminotransferase YP_003754168.1 22867 D 582899 CDS YP_003754169.1 300021558 9385894 24039..24995 1 NC_014313.1 TIGRFAM: ornithine carbamoyltransferase; KEGG: pla:Plav_0403 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; ornithine carbamoyltransferase 24995 9385894 Hden_0020 Hyphomicrobium denitrificans ATCC 51888 ornithine carbamoyltransferase YP_003754169.1 24039 D 582899 CDS YP_003754170.1 300021559 9385895 25014..25949 1 NC_014313.1 PFAM: Hsp33 protein; KEGG: bbt:BBta_0761 HSP33-like chaperonin; Hsp33 protein 25949 9385895 Hden_0021 Hyphomicrobium denitrificans ATCC 51888 Hsp33 protein YP_003754170.1 25014 D 582899 CDS YP_003754171.1 300021560 9385896 complement(25956..26516) 1 NC_014313.1 KEGG: cak:Caul_3284 signal transduction protein; signal transduction protein 26516 9385896 Hden_0022 Hyphomicrobium denitrificans ATCC 51888 signal transduction protein YP_003754171.1 25956 R 582899 CDS YP_003754172.1 300021561 9385897 complement(26709..27875) 1 NC_014313.1 KEGG: bmj:BMULJ_06091 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase ArgE 27875 9385897 Hden_0023 Hyphomicrobium denitrificans ATCC 51888 acetylornithine deacetylase ArgE YP_003754172.1 26709 R 582899 CDS YP_003754173.1 300021562 9385898 complement(27890..28345) 1 NC_014313.1 PFAM: ApaG domain protein; KEGG: oan:Oant_0397 ApaG; ApaG domain-containing protein 28345 9385898 Hden_0024 Hyphomicrobium denitrificans ATCC 51888 ApaG domain-containing protein YP_003754173.1 27890 R 582899 CDS YP_003754174.1 300021563 9385899 complement(28355..29563) 1 NC_014313.1 KEGG: azc:AZC_4021 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine sulfhydrylase 29563 9385899 Hden_0025 Hyphomicrobium denitrificans ATCC 51888 O-succinylhomoserine sulfhydrylase YP_003754174.1 28355 R 582899 CDS YP_003754175.1 300021564 9385900 29816..30940 1 NC_014313.1 PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: bra:BRADO6769 2'-deoxycytidine 5'-triphosphate deaminase; 2-deoxycytidine 5-triphosphate deaminase 30940 9385900 Hden_0026 Hyphomicrobium denitrificans ATCC 51888 2-deoxycytidine 5-triphosphate deaminase YP_003754175.1 29816 D 582899 CDS YP_003754176.1 300021565 9385901 complement(31106..31459) 1 NC_014313.1 PFAM: protein of unknown function DUF1428; KEGG: mlo:mlr2642 hypothetical protein; hypothetical protein 31459 9385901 Hden_0027 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754176.1 31106 R 582899 CDS YP_003754177.1 300021566 9385903 32115..32438 1 NC_014313.1 KEGG: rpt:Rpal_3302 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 32438 9385903 Hden_0029 Hyphomicrobium denitrificans ATCC 51888 histone family protein DNA-binding protein YP_003754177.1 32115 D 582899 CDS YP_003754178.1 300021567 9385904 complement(32565..33737) 1 NC_014313.1 KEGG: sme:SMc01096 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; succinyl-diaminopimelate desuccinylase 33737 9385904 Hden_0030 Hyphomicrobium denitrificans ATCC 51888 succinyl-diaminopimelate desuccinylase YP_003754178.1 32565 R 582899 CDS YP_003754179.1 300021568 9385905 complement(33734..34489) 1 NC_014313.1 KEGG: ccs:CCNA_03724 hypothetical protein; hypothetical protein 34489 9385905 Hden_0031 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754179.1 33734 R 582899 CDS YP_003754180.1 300021569 9385906 complement(34492..35346) 1 NC_014313.1 KEGG: mch:Mchl_1853 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 35346 9385906 Hden_0032 Hyphomicrobium denitrificans ATCC 51888 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_003754180.1 34492 R 582899 CDS YP_003754181.1 300021570 9385907 35707..35961 1 NC_014313.1 KEGG: glo:Glov_1412 hypothetical protein; hypothetical protein 35961 9385907 Hden_0033 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754181.1 35707 D 582899 CDS YP_003754182.1 300021571 9385908 complement(36079..36726) 1 NC_014313.1 PFAM: redoxin; KEGG: pla:Plav_1603 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin 36726 9385908 Hden_0034 Hyphomicrobium denitrificans ATCC 51888 redoxin YP_003754182.1 36079 R 582899 CDS YP_003754183.1 300021572 9385909 36764..38173 1 NC_014313.1 KEGG: mno:Mnod_7298 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase 38173 9385909 Hden_0035 Hyphomicrobium denitrificans ATCC 51888 argininosuccinate lyase YP_003754183.1 36764 D 582899 CDS YP_003754184.1 300021573 9385910 38231..38452 1 NC_014313.1 KEGG: bja:bsr1382 hypothetical protein; hypothetical protein 38452 9385910 Hden_0036 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754184.1 38231 D 582899 CDS YP_003754185.1 300021574 9385911 38577..39848 1 NC_014313.1 KEGG: mno:Mnod_1682 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 39848 9385911 Hden_0037 Hyphomicrobium denitrificans ATCC 51888 diaminopimelate decarboxylase YP_003754185.1 38577 D 582899 CDS YP_003754186.1 300021575 9385912 complement(40102..40995) 1 NC_014313.1 KEGG: met:M446_4081 hypothetical protein; hypothetical protein 40995 9385912 Hden_0038 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754186.1 40102 R 582899 CDS YP_003754187.1 300021576 9385913 41265..43955 1 NC_014313.1 KEGG: mpo:Mpop_1706 hypothetical protein; hypothetical protein 43955 9385913 Hden_0039 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754187.1 41265 D 582899 CDS YP_003754188.1 300021577 9385914 44155..45111 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pla:Plav_1268 LysR family transcriptional regulator; LysR family transcriptional regulator 45111 9385914 Hden_0040 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754188.1 44155 D 582899 CDS YP_003754189.1 300021578 9385915 complement(45132..46076) 1 NC_014313.1 KEGG: atc:AGR_C_1196 hypothetical protein; hypothetical protein 46076 9385915 Hden_0041 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754189.1 45132 R 582899 CDS YP_003754190.1 300021579 9385916 complement(46149..47240) 1 NC_014313.1 KEGG: cvi:CV_0172 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase 47240 9385916 Hden_0042 Hyphomicrobium denitrificans ATCC 51888 poly (3-hydroxybutyrate) depolymerase YP_003754190.1 46149 R 582899 CDS YP_003754191.1 300021580 9385917 complement(47319..49424) 1 NC_014313.1 KEGG: mno:Mnod_1733 penicillin-binding protein 1C; TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; penicillin-binding protein 1C 49424 9385917 Hden_0043 Hyphomicrobium denitrificans ATCC 51888 penicillin-binding protein 1C YP_003754191.1 47319 R 582899 CDS YP_003754192.1 300021581 9385918 complement(49601..54946) 1 NC_014313.1 PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; KEGG: bja:blr4438 hypothetical protein; alpha-2-macroglobulin 54946 9385918 Hden_0044 Hyphomicrobium denitrificans ATCC 51888 alpha-2-macroglobulin YP_003754192.1 49601 R 582899 CDS YP_003754193.1 300021582 9385919 complement(55261..55830) 1 NC_014313.1 KEGG: gem:GM21_1811 response regulator receiver modulated metal dependent phosphohydrolase; hypothetical protein 55830 9385919 Hden_0045 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754193.1 55261 R 582899 CDS YP_003754194.1 300021583 9385920 complement(55988..58411) 1 NC_014313.1 KEGG: hba:Hbal_2923 hypothetical protein; hypothetical protein 58411 9385920 Hden_0046 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754194.1 55988 R 582899 CDS YP_003754195.1 300021584 9385921 complement(58558..61077) 1 NC_014313.1 PFAM: glycosyl transferase family 51; KEGG: hth:HTH_0112 penicillin-binding protein; glycosyl transferase family 51 61077 9385921 Hden_0047 Hyphomicrobium denitrificans ATCC 51888 glycosyl transferase family 51 YP_003754195.1 58558 R 582899 CDS YP_003754196.1 300021585 9385922 complement(61850..65215) 1 NC_014313.1 SMART: ATPase AAA; KEGG: scl:sce7121 hypothetical protein; Sigma 54 interacting domain-containing protein 65215 9385922 Hden_0048 Hyphomicrobium denitrificans ATCC 51888 Sigma 54 interacting domain-containing protein YP_003754196.1 61850 R 582899 CDS YP_003754197.1 300021586 9385923 complement(65234..66397) 1 NC_014313.1 KEGG: mxa:MXAN_1592 hypothetical protein; hypothetical protein 66397 9385923 Hden_0049 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754197.1 65234 R 582899 CDS YP_003754198.1 300021587 9385924 66751..67404 1 NC_014313.1 PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_4591 allergen V5/TPX-1 family protein; SCP-like extracellular 67404 9385924 Hden_0050 Hyphomicrobium denitrificans ATCC 51888 SCP-like extracellular YP_003754198.1 66751 D 582899 CDS YP_003754199.1 300021588 9385925 complement(67502..68941) 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein; KEGG: rpd:RPD_1391 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 68941 9385925 Hden_0051 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein YP_003754199.1 67502 R 582899 CDS YP_003754200.1 300021589 9385926 complement(68962..69195) 1 NC_014313.1 KEGG: scb:SCAB_38741 pyridoxal-5'-phosphate dependent aminotransferase; hypothetical protein 69195 9385926 Hden_0052 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754200.1 68962 R 582899 CDS YP_003754201.1 300021590 9385927 69346..69657 1 NC_014313.1 KEGG: mva:Mvan_1255 hypothetical protein; hypothetical protein 69657 9385927 Hden_0053 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754201.1 69346 D 582899 CDS YP_003754202.1 300021591 9385928 complement(69673..70755) 1 NC_014313.1 KEGG: rpb:RPB_1345 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase 70755 9385928 Hden_0054 Hyphomicrobium denitrificans ATCC 51888 serine-type D-Ala-D-Ala carboxypeptidase YP_003754202.1 69673 R 582899 CDS YP_003754203.1 300021592 9385929 71092..73083 1 NC_014313.1 KEGG: cwo:Cwoe_3291 drug resistance transporter EmrB/QacA subfamily; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 73083 9385929 Hden_0055 Hyphomicrobium denitrificans ATCC 51888 EmrB/QacA subfamily drug resistance transporter YP_003754203.1 71092 D 582899 CDS YP_003754204.1 300021593 9385930 complement(73180..74049) 1 NC_014313.1 PFAM: aldo/keto reductase; KEGG: ddr:Deide_07880 oxidoreductase; aldo/keto reductase 74049 9385930 Hden_0056 Hyphomicrobium denitrificans ATCC 51888 aldo/keto reductase YP_003754204.1 73180 R 582899 CDS YP_003754205.1 300021594 9385931 74381..76045 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpe:RPE_1496 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 76045 9385931 Hden_0057 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003754205.1 74381 D 582899 CDS YP_003754206.1 300021595 9385932 complement(76079..76837) 1 NC_014313.1 KEGG: mth:MTH1780 stomatin-like protein; PFAM: band 7 protein; SMART: band 7 protein; band 7 protein 76837 9385932 Hden_0058 Hyphomicrobium denitrificans ATCC 51888 band 7 protein YP_003754206.1 76079 R 582899 CDS YP_003754207.1 300021596 9385933 complement(76902..77660) 1 NC_014313.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_01734 MarC family integral membrane protein; multiple antibiotic resistance (MarC)-like protein 77660 9385933 Hden_0059 Hyphomicrobium denitrificans ATCC 51888 multiple antibiotic resistance (MarC)-like protein YP_003754207.1 76902 R 582899 CDS YP_003754208.1 300021597 9385934 complement(77654..78100) 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: pla:Plav_2217 NUDIX hydrolase; NUDIX hydrolase 78100 9385934 Hden_0060 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003754208.1 77654 R 582899 CDS YP_003754209.1 300021598 9385935 complement(78103..79281) 1 NC_014313.1 PFAM: monooxygenase FAD-binding; KEGG: nha:Nham_2584 monooxygenase, FAD-binding; FAD-binding monooxygenase protein 79281 9385935 Hden_0061 Hyphomicrobium denitrificans ATCC 51888 FAD-binding monooxygenase protein YP_003754209.1 78103 R 582899 CDS YP_003754210.1 300021599 9385936 complement(79324..79566) 1 NC_014313.1 PFAM: protein of unknown function DUF2327; KEGG: rpd:RPD_3291 hypothetical protein; hypothetical protein 79566 9385936 Hden_0062 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754210.1 79324 R 582899 CDS YP_003754211.1 300021600 9385937 79673..80485 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: met:M446_6949 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 80485 9385937 Hden_0063 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003754211.1 79673 D 582899 CDS YP_003754212.1 300021601 9385938 80975..81661 1 NC_014313.1 PFAM: Extensin family protein; KEGG: xau:Xaut_1728 extensin family protein; Extensin family protein 81661 9385938 Hden_0064 Hyphomicrobium denitrificans ATCC 51888 Extensin family protein YP_003754212.1 80975 D 582899 CDS YP_003754213.1 300021602 9385939 81820..82464 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO1168 TetR family transcriptional regulator; TetR family transcriptional regulator 82464 9385939 Hden_0065 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754213.1 81820 D 582899 CDS YP_003754214.1 300021603 9385940 82617..83042 1 NC_014313.1 KEGG: xau:Xaut_3071 hypothetical protein; hypothetical protein 83042 9385940 Hden_0066 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754214.1 82617 D 582899 CDS YP_003754215.1 300021604 9385941 83119..83520 1 NC_014313.1 KEGG: xau:Xaut_3071 hypothetical protein; hypothetical protein 83520 9385941 Hden_0067 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754215.1 83119 D 582899 CDS YP_003754216.1 300021605 9385942 83686..84417 1 NC_014313.1 KEGG: mno:Mnod_4909 protein of unknown function DUF1332; PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; hypothetical protein 84417 9385942 Hden_0068 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754216.1 83686 D 582899 CDS YP_003754217.1 300021606 9385943 84414..85184 1 NC_014313.1 KEGG: azc:AZC_4549 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidoglycan-binding protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 85184 9385943 Hden_0069 Hyphomicrobium denitrificans ATCC 51888 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_003754217.1 84414 D 582899 CDS YP_003754218.1 300021607 9385944 85278..86906 1 NC_014313.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: lhk:LHK_01973 sulfatase; sulfatase 86906 9385944 Hden_0070 Hyphomicrobium denitrificans ATCC 51888 sulfatase YP_003754218.1 85278 D 582899 CDS YP_003754219.1 300021608 9385945 86995..87834 1 NC_014313.1 PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein 87834 9385945 Hden_0071 Hyphomicrobium denitrificans ATCC 51888 pentapeptide repeat protein YP_003754219.1 86995 D 582899 CDS YP_003754220.1 300021609 9385946 87986..88270 1 NC_014313.1 KEGG: mpo:Mpop_3271 conserved hypothetical protein; exported protein; hypothetical protein 88270 9385946 Hden_0072 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754220.1 87986 D 582899 CDS YP_003754221.1 300021610 9385947 complement(88318..88716) 1 NC_014313.1 KEGG: pvx:PVX_079910 hypothetical protein; hypothetical protein 88716 9385947 Hden_0073 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754221.1 88318 R 582899 CDS YP_003754222.1 300021611 9385948 88913..89170 1 NC_014313.1 KEGG: ppp:PHYPADRAFT_85626 hypothetical protein; hypothetical protein 89170 9385948 Hden_0074 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754222.1 88913 D 582899 CDS YP_003754223.1 300021612 9385949 complement(89198..89728) 1 NC_014313.1 PFAM: protein of unknown function DUF2478; KEGG: oca:OCAR_6130 hypothetical protein; hypothetical protein 89728 9385949 Hden_0075 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754223.1 89198 R 582899 CDS YP_003754224.1 300021613 9385950 90021..90365 1 NC_014313.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bmr:BMI_I1785 ferredoxin A; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 90365 9385950 Hden_0076 Hyphomicrobium denitrificans ATCC 51888 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003754224.1 90021 D 582899 CDS YP_003754225.1 300021614 9385951 complement(90444..90722) 1 NC_014313.1 KEGG: cvi:CV_1829 sulfate transporter permease protein CysW; hypothetical protein 90722 9385951 Hden_0077 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754225.1 90444 R 582899 CDS YP_003754226.1 300021615 9385952 91151..92437 1 NC_014313.1 KEGG: azc:AZC_1368 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic protein 92437 9385952 Hden_0078 Hyphomicrobium denitrificans ATCC 51888 ABC transporter periplasmic protein YP_003754226.1 91151 D 582899 CDS YP_003754227.1 300021616 9385953 complement(92451..93230) 1 NC_014313.1 KEGG: azc:AZC_1369 transcriptional regulatory protein; PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator; GntR family transcriptional regulator 93230 9385953 Hden_0079 Hyphomicrobium denitrificans ATCC 51888 GntR family transcriptional regulator YP_003754227.1 92451 R 582899 CDS YP_003754228.1 300021617 9385954 complement(93266..93958) 1 NC_014313.1 KEGG: pau:PA14_26165 hypothetical protein; hypothetical protein 93958 9385954 Hden_0080 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754228.1 93266 R 582899 CDS YP_003754229.1 300021618 9385955 94325..96106 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: azc:AZC_1370 amino acid transporter permease; amino acid permease-associated protein 96106 9385955 Hden_0081 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003754229.1 94325 D 582899 CDS YP_003754230.1 300021619 9385956 96211..96816 1 NC_014313.1 KEGG: azc:AZC_1371 hypothetical protein; hypothetical protein 96816 9385956 Hden_0082 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754230.1 96211 D 582899 CDS YP_003754231.1 300021620 9385957 96813..97772 1 NC_014313.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: ara:Arad_8374 ferredoxin protein; ferredoxin 97772 9385957 Hden_0083 Hyphomicrobium denitrificans ATCC 51888 ferredoxin YP_003754231.1 96813 D 582899 CDS YP_003754232.1 300021621 9385958 97801..98841 1 NC_014313.1 KEGG: ret:RHE_PE00412 hypothetical protein; hypothetical protein 98841 9385958 Hden_0084 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754232.1 97801 D 582899 CDS YP_003754233.1 300021622 9385959 98901..100019 1 NC_014313.1 PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: xau:Xaut_3187 glycine cleavage T protein (aminomethyl transferase); glycine cleavage system protein T 100019 9385959 Hden_0085 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein T YP_003754233.1 98901 D 582899 CDS YP_003754234.1 300021623 9385960 100274..100705 1 NC_014313.1 PFAM: globin; KEGG: rde:RD1_4240 globin-like protein; globin 100705 9385960 Hden_0086 Hyphomicrobium denitrificans ATCC 51888 globin YP_003754234.1 100274 D 582899 CDS YP_003754235.1 300021624 9385961 complement(100821..101360) 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmr:BMI_II478 glyoxalase; glyoxalase/bleomycin resistance protein/dioxygenase 101360 9385961 Hden_0087 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003754235.1 100821 R 582899 CDS YP_003754236.1 300021625 9385962 complement(101443..102228) 1 NC_014313.1 PFAM: peptidase M23; KEGG: vpa:VP0548 ToxR-activated protein TagE; peptidase M23 102228 9385962 Hden_0088 Hyphomicrobium denitrificans ATCC 51888 peptidase M23 YP_003754236.1 101443 R 582899 CDS YP_003754237.1 300021626 9385963 102472..103350 1 NC_014313.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: vei:Veis_2444 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 103350 9385963 Hden_0089 Hyphomicrobium denitrificans ATCC 51888 4'-phosphopantetheinyl transferase YP_003754237.1 102472 D 582899 CDS YP_003754238.1 300021627 9385964 103310..107395 1 NC_014313.1 KEGG: dma:DMR_01570 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein; amino acid adenylation protein 107395 9385964 Hden_0090 Hyphomicrobium denitrificans ATCC 51888 amino acid adenylation protein YP_003754238.1 103310 D 582899 CDS YP_003754239.1 300021628 9385965 107583..109085 1 NC_014313.1 KEGG: oca:OCAR_7002 hypothetical protein; hypothetical protein 109085 9385965 Hden_0091 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754239.1 107583 D 582899 CDS YP_003754240.1 300021629 9385966 109211..110206 1 NC_014313.1 KEGG: mes:Meso_0777 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 110206 9385966 Hden_0092 Hyphomicrobium denitrificans ATCC 51888 UDP-glucose 4-epimerase YP_003754240.1 109211 D 582899 CDS YP_003754241.1 300021630 9385967 complement(110261..112264) 1 NC_014313.1 PFAM: protein of unknown function DUF839; KEGG: oan:Oant_4449 hypothetical protein; hypothetical protein 112264 9385967 Hden_0093 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754241.1 110261 R 582899 CDS YP_003754242.1 300021631 9385968 112550..114094 1 NC_014313.1 PFAM: aminoglycoside phosphotransferase; KEGG: mlo:mll6593 hypothetical protein; aminoglycoside phosphotransferase 114094 9385968 Hden_0094 Hyphomicrobium denitrificans ATCC 51888 aminoglycoside phosphotransferase YP_003754242.1 112550 D 582899 CDS YP_003754243.1 300021632 9385969 114214..114579 1 NC_014313.1 KEGG: pzu:PHZ_c0640 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 114579 9385969 Hden_0095 Hyphomicrobium denitrificans ATCC 51888 cold-shock DNA-binding domain-containing protein YP_003754243.1 114214 D 582899 CDS YP_003754244.1 300021633 9385970 114830..115867 1 NC_014313.1 PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_1827 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein 115867 9385970 Hden_0096 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase GroES domain-containing protein YP_003754244.1 114830 D 582899 CDS YP_003754245.1 300021634 9385971 115934..116476 1 NC_014313.1 KEGG: tgr:Tgr7_1944 flavin reductase domain protein FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 116476 9385971 Hden_0097 Hyphomicrobium denitrificans ATCC 51888 flavin reductase YP_003754245.1 115934 D 582899 CDS YP_003754246.1 300021635 9385972 116721..116948 1 NC_014313.1 KEGG: stp:Strop_0115 chaperone protein DnaJ; hypothetical protein 116948 9385972 Hden_0098 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754246.1 116721 D 582899 CDS YP_003754247.1 300021636 9385973 complement(116995..118245) 1 NC_014313.1 KEGG: rpe:RPE_3798 PAS/PAC sensor protein; PAS/PAC sensor protein 118245 9385973 Hden_0099 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor protein YP_003754247.1 116995 R 582899 CDS YP_003754248.1 300021637 9385974 complement(118517..119500) 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpo:Mpop_5160 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 119500 9385974 Hden_0100 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003754248.1 118517 R 582899 CDS YP_003754249.1 300021638 9385975 complement(119497..120600) 1 NC_014313.1 KEGG: pla:Plav_1923 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase 120600 9385975 Hden_0101 Hyphomicrobium denitrificans ATCC 51888 GDP-mannose 4,6-dehydratase YP_003754249.1 119497 R 582899 CDS YP_003754250.1 300021639 9385976 complement(120800..122503) 1 NC_014313.1 KEGG: tgr:Tgr7_2287 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 122503 9385976 Hden_0102 Hyphomicrobium denitrificans ATCC 51888 methyl-accepting chemotaxis sensory transducer YP_003754250.1 120800 R 582899 CDS YP_003754251.1 300021640 9385977 complement(122735..123637) 1 NC_014313.1 KEGG: bph:Bphy_5922 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methenyltetrahydrofolate cyclohydrolase 123637 9385977 Hden_0103 Hyphomicrobium denitrificans ATCC 51888 methenyltetrahydrofolate cyclohydrolase YP_003754251.1 122735 R 582899 CDS YP_003754252.1 300021641 9385978 complement(123720..125396) 1 NC_014313.1 KEGG: rhi:NGR_c23560 formate-tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; formate--tetrahydrofolate ligase 125396 9385978 Hden_0104 Hyphomicrobium denitrificans ATCC 51888 formate--tetrahydrofolate ligase YP_003754252.1 123720 R 582899 CDS YP_003754253.1 300021642 9385979 126339..128273 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein CapD; KEGG: rma:Rmag_0886 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 128273 9385979 Hden_0105 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein CapD YP_003754253.1 126339 D 582899 CDS YP_003754254.1 300021643 9385980 complement(128326..130476) 1 NC_014313.1 PFAM: integrase family protein; O-antigen polymerase; KEGG: mch:Mchl_4758 integrase family protein; integrase family protein 130476 9385980 Hden_0106 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003754254.1 128326 R 582899 CDS YP_003754255.1 300021644 9385981 complement(130473..130742) 1 NC_014313.1 KEGG: dsh:Dshi_0989 hypothetical protein; hypothetical protein 130742 9385981 Hden_0107 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754255.1 130473 R 582899 CDS YP_003754256.1 300021645 9385982 complement(130749..130940) 1 NC_014313.1 KEGG: vex:VEA_001988 fatty oxidation complex alpha subunit FadB; hypothetical protein 130940 9385982 Hden_0108 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754256.1 130749 R 582899 CDS YP_003754257.1 300021646 9385983 complement(130990..131499) 1 NC_014313.1 KEGG: bgl:bglu_1g21240 P42.1; manually curated; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; Pathogenesis-related transcriptional factor and ERF protein 131499 9385983 Hden_0109 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003754257.1 130990 R 582899 CDS YP_003754258.1 300021647 9385984 complement(131504..131851) 1 NC_014313.1 KEGG: aco:Amico_0795 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; hypothetical protein 131851 9385984 Hden_0110 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754258.1 131504 R 582899 CDS YP_003754259.1 300021648 9385985 complement(131864..132118) 1 NC_014313.1 KEGG: cyb:CYB_1946 hypothetical protein; hypothetical protein 132118 9385985 Hden_0111 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754259.1 131864 R 582899 CDS YP_003754260.1 300021649 9385986 complement(132122..132373) 1 NC_014313.1 hypothetical protein 132373 9385986 Hden_0112 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754260.1 132122 R 582899 CDS YP_003754261.1 300021650 9385987 complement(132370..132606) 1 NC_014313.1 KEGG: bfo:BRAFLDRAFT_67299 hypothetical protein; hypothetical protein 132606 9385987 Hden_0113 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754261.1 132370 R 582899 CDS YP_003754262.1 300021651 9385988 complement(132596..133324) 1 NC_014313.1 manually curated; KEGG: pkn:PKH_123140 splicing factor; hypothetical protein 133324 9385988 Hden_0114 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754262.1 132596 R 582899 CDS YP_003754263.1 300021652 9385989 complement(133321..133581) 1 NC_014313.1 KEGG: mdo:100019691 similar to FRAP-related protein; hypothetical protein 133581 9385989 Hden_0115 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754263.1 133321 R 582899 CDS YP_003754264.1 300021653 9385990 complement(133578..133724) 1 NC_014313.1 hypothetical protein 133724 9385990 Hden_0116 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754264.1 133578 R 582899 CDS YP_003754265.1 300021654 9385991 complement(133724..134074) 1 NC_014313.1 KEGG: dmo:Dmoj_GI23121 GI23121 gene product from transcript GI23121-RA; hypothetical protein 134074 9385991 Hden_0117 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754265.1 133724 R 582899 CDS YP_003754266.1 300021655 9385992 complement(134075..134392) 1 NC_014313.1 KEGG: olu:OSTLU_24147 predicted protein; hypothetical protein 134392 9385992 Hden_0118 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754266.1 134075 R 582899 CDS YP_003754267.1 300021656 9385993 complement(134389..134634) 1 NC_014313.1 hypothetical protein 134634 9385993 Hden_0119 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754267.1 134389 R 582899 CDS YP_003754268.1 300021657 9385994 complement(134628..135062) 1 NC_014313.1 KEGG: cre:CHLREDRAFT_167801 hypothetical protein; hypothetical protein 135062 9385994 Hden_0120 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754268.1 134628 R 582899 CDS YP_003754269.1 300021658 9385995 complement(135459..136214) 1 NC_014313.1 KEGG: mth:MTH1028 hypothetical protein; hypothetical protein 136214 9385995 Hden_0121 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754269.1 135459 R 582899 CDS YP_003754270.1 300021659 9385996 complement(136211..136585) 1 NC_014313.1 PFAM: HNH endonuclease; KEGG: sye:Syncc9902_1436 HNH nuclease; HNH endonuclease 136585 9385996 Hden_0122 Hyphomicrobium denitrificans ATCC 51888 HNH endonuclease YP_003754270.1 136211 R 582899 CDS YP_003754271.1 300021660 9385997 complement(136582..136740) 1 NC_014313.1 KEGG: tva:TVAG_348550 Sec23/Sec24 zinc finger family protein; hypothetical protein 136740 9385997 Hden_0123 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754271.1 136582 R 582899 CDS YP_003754272.1 300021661 9385998 complement(136737..137381) 1 NC_014313.1 KEGG: lhk:LHK_01497 exonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease 137381 9385998 Hden_0124 Hyphomicrobium denitrificans ATCC 51888 phage-type endonuclease YP_003754272.1 136737 R 582899 CDS YP_003754273.1 300021662 9385999 complement(137378..138094) 1 NC_014313.1 PFAM: ERF family protein; KEGG: rpi:Rpic_2344 ERF family protein; ERF family protein 138094 9385999 Hden_0125 Hyphomicrobium denitrificans ATCC 51888 ERF family protein YP_003754273.1 137378 R 582899 CDS YP_003754274.1 300021663 9386000 complement(138091..138261) 1 NC_014313.1 hypothetical protein 138261 9386000 Hden_0126 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754274.1 138091 R 582899 CDS YP_003754275.1 300021664 9386001 complement(138248..138658) 1 NC_014313.1 KEGG: sma:SAV_2858 M protein; hypothetical protein 138658 9386001 Hden_0127 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754275.1 138248 R 582899 CDS YP_003754276.1 300021665 9386002 complement(138868..138984) 1 NC_014313.1 hypothetical protein 138984 9386002 Hden_0128 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754276.1 138868 R 582899 CDS YP_003754277.1 300021666 9386003 complement(138984..139190) 1 NC_014313.1 hypothetical protein 139190 9386003 Hden_0129 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754277.1 138984 R 582899 CDS YP_003754278.1 300021667 9386004 complement(139190..139558) 1 NC_014313.1 KEGG: lga:LGAS_1167 trigger factor; hypothetical protein 139558 9386004 Hden_0130 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754278.1 139190 R 582899 CDS YP_003754279.1 300021668 9386005 139923..140546 1 NC_014313.1 KEGG: bpt:Bpet2666 chloride channel protein-related protein; hypothetical protein 140546 9386005 Hden_0131 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754279.1 139923 D 582899 CDS YP_003754280.1 300021669 9386006 complement(140627..140977) 1 NC_014313.1 KEGG: ere:EUBREC_0387 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 140977 9386006 Hden_0132 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754280.1 140627 R 582899 CDS YP_003754281.1 300021670 9386007 complement(141202..141480) 1 NC_014313.1 KEGG: mdo:100018023 similar to ATPase, class I, type 8B, member 3; hypothetical protein 141480 9386007 Hden_0133 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754281.1 141202 R 582899 CDS YP_003754282.1 300021671 9386008 141835..142182 1 NC_014313.1 KEGG: pmu:PM0674 hypothetical protein; hypothetical protein 142182 9386008 Hden_0134 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754282.1 141835 D 582899 CDS YP_003754283.1 300021672 9386009 142251..143213 1 NC_014313.1 KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein; hypothetical protein 143213 9386009 Hden_0135 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754283.1 142251 D 582899 CDS YP_003754284.1 300021673 9386010 143200..143649 1 NC_014313.1 KEGG: sro:Sros_7095 hypothetical protein; hypothetical protein 143649 9386010 Hden_0136 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754284.1 143200 D 582899 CDS YP_003754285.1 300021674 9386011 143646..143873 1 NC_014313.1 KEGG: mlo:mlr7272 hypothetical protein; hypothetical protein 143873 9386011 Hden_0137 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754285.1 143646 D 582899 CDS YP_003754286.1 300021675 9386012 144210..144416 1 NC_014313.1 KEGG: dfe:Dfer_3702 protein of unknown function DUF1549; hypothetical protein 144416 9386012 Hden_0138 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754286.1 144210 D 582899 CDS YP_003754287.1 300021676 9386013 144517..144657 1 NC_014313.1 hypothetical protein 144657 9386013 Hden_0139 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754287.1 144517 D 582899 CDS YP_003754288.1 300021677 9386014 144654..145004 1 NC_014313.1 KEGG: tmz:Tmz1t_0342 ATPase AAA; hypothetical protein 145004 9386014 Hden_0140 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754288.1 144654 D 582899 CDS YP_003754289.1 300021678 9386015 145001..145555 1 NC_014313.1 KEGG: dol:Dole_0697 NusG antitermination factor; hypothetical protein 145555 9386015 Hden_0141 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754289.1 145001 D 582899 CDS YP_003754290.1 300021679 9386016 145552..145704 1 NC_014313.1 hypothetical protein 145704 9386016 Hden_0142 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754290.1 145552 D 582899 CDS YP_003754291.1 300021680 9386017 145694..145999 1 NC_014313.1 KEGG: bph:Bphy_1887 lambda family phage portal protein; hypothetical protein 145999 9386017 Hden_0143 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754291.1 145694 D 582899 CDS YP_003754292.1 300021681 9386018 complement(146027..147064) 1 NC_014313.1 KEGG: pat:Patl_2643 KDPG and KHG aldolase; hypothetical protein 147064 9386018 Hden_0144 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754292.1 146027 R 582899 CDS YP_003754293.1 300021682 9386019 complement(147061..147180) 1 NC_014313.1 hypothetical protein 147180 9386019 Hden_0145 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754293.1 147061 R 582899 CDS YP_003754294.1 300021683 9386020 147382..147591 1 NC_014313.1 KEGG: rru:Rru_A0712 XRE family transcriptional regulator; hypothetical protein 147591 9386020 Hden_0146 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754294.1 147382 D 582899 CDS YP_003754295.1 300021684 9386021 147588..148199 1 NC_014313.1 KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein 148199 9386021 Hden_0147 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003754295.1 147588 D 582899 CDS YP_003754296.1 300021685 9386022 148617..149417 1 NC_014313.1 KEGG: ade:Adeh_3620 hypothetical protein; hypothetical protein 149417 9386022 Hden_0148 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754296.1 148617 D 582899 CDS YP_003754297.1 300021686 9386023 149453..150613 1 NC_014313.1 KEGG: slt:Slit_1566 plectin; hypothetical protein 150613 9386023 Hden_0149 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754297.1 149453 D 582899 CDS YP_003754298.1 300021687 9386024 150610..150777 1 NC_014313.1 KEGG: api:100159509 similar to excision repair cross-complementing rodent repair deficiency, complementation group 4; excision repair cross-complementing rodent repair deficiency, complementation group 4-like protein 150777 9386024 Hden_0150 Hyphomicrobium denitrificans ATCC 51888 excision repair cross-complementing rodent repair deficiency, complementation group 4-like protein YP_003754298.1 150610 D 582899 CDS YP_003754299.1 300021688 9386025 150777..152507 1 NC_014313.1 KEGG: mma:MM_2295 surface layer protein B; hypothetical protein 152507 9386025 Hden_0151 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754299.1 150777 D 582899 CDS YP_003754300.1 300021689 9386026 152511..152702 1 NC_014313.1 hypothetical protein 152702 9386026 Hden_0152 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754300.1 152511 D 582899 CDS YP_003754301.1 300021690 9386027 152703..153041 1 NC_014313.1 KEGG: ppa:PAS_chr2-2_0118 hypothetical protein; hypothetical protein 153041 9386027 Hden_0153 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754301.1 152703 D 582899 CDS YP_003754302.1 300021691 9386028 153038..153445 1 NC_014313.1 manually curated; KEGG: hap:HAPS_1583 phage small subunit terminase; phage small subunit terminase 153445 9386028 Hden_0154 Hyphomicrobium denitrificans ATCC 51888 phage small subunit terminase YP_003754302.1 153038 D 582899 CDS YP_003754303.1 300021692 9386029 153417..154919 1 NC_014313.1 PFAM: protein of unknown function DUF264; KEGG: mlo:mll0463 bacteriophage terminase large subunit-like protein; hypothetical protein 154919 9386029 Hden_0155 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754303.1 153417 D 582899 CDS YP_003754304.1 300021693 9386030 154904..156955 1 NC_014313.1 KEGG: ctt:CtCNB1_2648 hypothetical protein; hypothetical protein 156955 9386030 Hden_0156 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754304.1 154904 D 582899 CDS YP_003754305.1 300021694 9386031 156952..157212 1 NC_014313.1 KEGG: art:Arth_2332 hypothetical protein; hypothetical protein 157212 9386031 Hden_0157 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754305.1 156952 D 582899 CDS YP_003754306.1 300021695 9386032 157209..157379 1 NC_014313.1 hypothetical protein 157379 9386032 Hden_0158 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754306.1 157209 D 582899 CDS YP_003754307.1 300021696 9386033 157496..158368 1 NC_014313.1 KEGG: mrd:Mrad2831_5694 hypothetical protein; hypothetical protein 158368 9386033 Hden_0159 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754307.1 157496 D 582899 CDS YP_003754308.1 300021697 9386034 158425..159537 1 NC_014313.1 KEGG: rlt:Rleg2_1147 hypothetical protein; hypothetical protein 159537 9386034 Hden_0160 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754308.1 158425 D 582899 CDS YP_003754309.1 300021698 9386035 159552..160007 1 NC_014313.1 KEGG: yen:YE0694 adhesin; hypothetical protein 160007 9386035 Hden_0161 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754309.1 159552 D 582899 CDS YP_003754310.1 300021699 9386036 160058..160273 1 NC_014313.1 KEGG: osa:4336532 hypothetical protein; hypothetical protein 160273 9386036 Hden_0162 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754310.1 160058 D 582899 CDS YP_003754311.1 300021700 9386037 160254..160625 1 NC_014313.1 KEGG: mrb:Mrub_0518 type IV secretory pathway VirB4 protein; hypothetical protein 160625 9386037 Hden_0163 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754311.1 160254 D 582899 CDS YP_003754312.1 300021701 9386038 160625..162046 1 NC_014313.1 KEGG: rpi:Rpic_2295 hypothetical protein; hypothetical protein 162046 9386038 Hden_0164 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754312.1 160625 D 582899 CDS YP_003754313.1 300021702 9386039 162043..162495 1 NC_014313.1 KEGG: ypb:YPTS_3441 outer membrane autotransporter; outer membrane autotransporter 162495 9386039 Hden_0165 Hyphomicrobium denitrificans ATCC 51888 outer membrane autotransporter YP_003754313.1 162043 D 582899 CDS YP_003754314.1 300021703 9386040 162492..163184 1 NC_014313.1 KEGG: pan:PODANSg4525 hypothetical protein; hypothetical protein 163184 9386040 Hden_0166 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754314.1 162492 D 582899 CDS YP_003754315.1 300021704 9386041 163216..163821 1 NC_014313.1 KEGG: rcu:RCOM_1968810 DNA transfer protein gp7; hypothetical protein 163821 9386041 Hden_0167 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754315.1 163216 D 582899 CDS YP_003754316.1 300021705 9386042 163821..164309 1 NC_014313.1 PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bgl:bglu_1g21240 P42.1; Pathogenesis-related transcriptional factor and ERF protein 164309 9386042 Hden_0168 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003754316.1 163821 D 582899 CDS YP_003754317.1 300021706 9386043 164309..165490 1 NC_014313.1 KEGG: azc:AZC_0850 hypothetical protein; hypothetical protein 165490 9386043 Hden_0169 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754317.1 164309 D 582899 CDS YP_003754318.1 300021707 9386044 165490..167589 1 NC_014313.1 KEGG: mes:Meso_0239 hypothetical protein; hypothetical protein 167589 9386044 Hden_0170 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754318.1 165490 D 582899 CDS YP_003754319.1 300021708 9386046 167812..169161 1 NC_014313.1 KEGG: mea:Mex_1p1304 hypothetical protein; hypothetical protein 169161 9386046 Hden_0172 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754319.1 167812 D 582899 CDS YP_003754320.1 300021709 9386047 169158..169601 1 NC_014313.1 KEGG: ang:An10g00420 hypothetical protein; hypothetical protein 169601 9386047 Hden_0173 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754320.1 169158 D 582899 CDS YP_003754321.1 300021710 9386048 169588..169935 1 NC_014313.1 KEGG: syw:SYNW2350 hypothetical protein; hypothetical protein 169935 9386048 Hden_0174 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754321.1 169588 D 582899 CDS YP_003754322.1 300021711 9386049 169932..170729 1 NC_014313.1 KEGG: abc:ACICU_02150 hypothetical protein; hypothetical protein 170729 9386049 Hden_0175 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754322.1 169932 D 582899 CDS YP_003754323.1 300021712 9386050 170729..170977 1 NC_014313.1 KEGG: gym:GYMC10_3997 hypothetical protein; hypothetical protein 170977 9386050 Hden_0176 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754323.1 170729 D 582899 CDS YP_003754324.1 300021713 9386051 complement(171132..171617) 1 NC_014313.1 KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein 171617 9386051 Hden_0177 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003754324.1 171132 R 582899 CDS YP_003754325.1 300021714 9386052 171653..172429 1 NC_014313.1 KEGG: nfa:nfa8110 hypothetical protein; hypothetical protein 172429 9386052 Hden_0178 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754325.1 171653 D 582899 CDS YP_003754326.1 300021715 9386053 172469..172729 1 NC_014313.1 KEGG: bmj:BMULJ_02960 type IV pilus assembly protein; hypothetical protein 172729 9386053 Hden_0179 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754326.1 172469 D 582899 CDS YP_003754327.1 300021716 9386054 complement(172872..173249) 1 NC_014313.1 KEGG: xau:Xaut_0830 citrate transporter; hypothetical protein 173249 9386054 Hden_0180 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754327.1 172872 R 582899 CDS YP_003754328.1 300021717 9386055 173274..174008 1 NC_014313.1 PFAM: glycosyl transferase family 25; KEGG: swd:Swoo_0075 glycosyl transferase; glycosyl transferase family protein 174008 9386055 Hden_0181 Hyphomicrobium denitrificans ATCC 51888 glycosyl transferase family protein YP_003754328.1 173274 D 582899 CDS YP_003754329.1 300021718 9386056 174227..175534 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein; KEGG: dda:Dd703_0209 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 175534 9386056 Hden_0182 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein YP_003754329.1 174227 D 582899 CDS YP_003754330.1 300021719 9386057 175531..176742 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1499 glycosyltransferase; group 1 glycosyl transferase 176742 9386057 Hden_0183 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754330.1 175531 D 582899 CDS YP_003754331.1 300021720 9386058 176733..178253 1 NC_014313.1 KEGG: eba:ebA5880 hypothetical protein; hypothetical protein 178253 9386058 Hden_0184 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754331.1 176733 D 582899 CDS YP_003754332.1 300021721 9386059 178240..179274 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis domain protein; KEGG: pap:PSPA7_1980 polysaccharide biosynthesis protein; O-antigen biosynthesis protein; polysaccharide biosynthesis protein CapD 179274 9386059 Hden_0185 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein CapD YP_003754332.1 178240 D 582899 CDS YP_003754333.1 300021722 9386060 179276..180361 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pen:PSEEN1501 nucleoside-diphosphate-sugar epimerase WbjC; NAD-dependent epimerase/dehydratase 180361 9386060 Hden_0186 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003754333.1 179276 D 582899 CDS YP_003754334.1 300021723 9386061 180345..181484 1 NC_014313.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tmz:Tmz1t_3803 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 181484 9386061 Hden_0187 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylglucosamine 2-epimerase YP_003754334.1 180345 D 582899 CDS YP_003754335.1 300021724 9386062 181502..182731 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: pph:Ppha_0573 glycosyl transferase group 1; group 1 glycosyl transferase 182731 9386062 Hden_0188 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754335.1 181502 D 582899 CDS YP_003754336.1 300021725 9386063 182997..183656 1 NC_014313.1 PFAM: sugar transferase; KEGG: tmz:Tmz1t_1126 undecaprenyl-phosphate galactose phosphotransferase; sugar transferase 183656 9386063 Hden_0189 Hyphomicrobium denitrificans ATCC 51888 sugar transferase YP_003754336.1 182997 D 582899 CDS YP_003754337.1 300021726 9386064 183653..184276 1 NC_014313.1 TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: avn:Avin_30060 trimeric LpxA-like family protein; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 184276 9386064 Hden_0190 Hyphomicrobium denitrificans ATCC 51888 sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family YP_003754337.1 183653 D 582899 CDS YP_003754338.1 300021727 9386065 184284..185459 1 NC_014313.1 KEGG: pph:Ppha_0579 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 185459 9386065 Hden_0191 Hyphomicrobium denitrificans ATCC 51888 glutamine--scyllo-inositol transaminase YP_003754338.1 184284 D 582899 CDS YP_003754339.1 300021728 9386067 complement(185798..186685) 1 NC_014313.1 PFAM: glycosyl transferase family 2; KEGG: mch:Mchl_0392 glycosyl transferase family 2; family 2 glycosyl transferase 186685 9386067 Hden_0193 Hyphomicrobium denitrificans ATCC 51888 family 2 glycosyl transferase YP_003754339.1 185798 R 582899 CDS YP_003754340.1 300021729 9386068 187268..189478 1 NC_014313.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bph:Bphy_5960 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 189478 9386068 Hden_0194 Hyphomicrobium denitrificans ATCC 51888 NADH:flavin oxidoreductase/NADH oxidase YP_003754340.1 187268 D 582899 CDS YP_003754341.1 300021730 9386069 189534..189893 1 NC_014313.1 PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll3593 hypothetical protein; hypothetical protein 189893 9386069 Hden_0195 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754341.1 189534 D 582899 CDS YP_003754342.1 300021731 9386070 190127..193324 1 NC_014313.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bph:Bphy_5959 hypothetical protein; electron transfer flavoprotein alpha/beta-subunit 193324 9386070 Hden_0196 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein alpha/beta-subunit YP_003754342.1 190127 D 582899 CDS YP_003754343.1 300021732 9386071 193327..194292 1 NC_014313.1 KEGG: bph:Bphy_5956 electron transfer flavoprotein alpha subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 194292 9386071 Hden_0197 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein alpha/beta-subunit YP_003754343.1 193327 D 582899 CDS YP_003754344.1 300021733 9386072 complement(194909..196360) 1 NC_014313.1 KEGG: prw:PsycPRwf_0546 hypothetical protein; hypothetical protein 196360 9386072 Hden_0198 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754344.1 194909 R 582899 CDS YP_003754345.1 300021734 9386074 complement(197203..197760) 1 NC_014313.1 PFAM: protein of unknown function DUF204; KEGG: bbt:BBta_7389 hypothetical protein; hypothetical protein 197760 9386074 Hden_0199 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754345.1 197203 R 582899 CDS YP_003754346.1 300021735 9386075 complement(198168..199211) 1 NC_014313.1 KEGG: nve:NEMVE_v1g246414 hypothetical protein; hypothetical protein 199211 9386075 Hden_0200 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754346.1 198168 R 582899 CDS YP_003754347.1 300021736 9386076 199530..199844 1 NC_014313.1 KEGG: rlt:Rleg2_3869 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 199844 9386076 Hden_0201 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L21 YP_003754347.1 199530 D 582899 CDS YP_003754348.1 300021737 9386077 199875..200147 1 NC_014313.1 KEGG: avi:Avi_4287 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 200147 9386077 Hden_0202 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L27 YP_003754348.1 199875 D 582899 CDS YP_003754349.1 300021738 9386078 200260..200781 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_1481 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 200781 9386078 Hden_0203 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003754349.1 200260 D 582899 CDS YP_003754350.1 300021739 9386079 200778..201818 1 NC_014313.1 KEGG: bid:Bind_0415 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP-binding protein Obg/CgtA 201818 9386079 Hden_0204 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein Obg/CgtA YP_003754350.1 200778 D 582899 CDS YP_003754351.1 300021740 9386080 201903..203000 1 NC_014313.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rpe:RPE_4095 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 203000 9386080 Hden_0205 Hyphomicrobium denitrificans ATCC 51888 sodium/calcium exchanger membrane region YP_003754351.1 201903 D 582899 CDS YP_003754352.1 300021741 9386081 203152..204312 1 NC_014313.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: azc:AZC_4139 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 204312 9386081 Hden_0206 Hyphomicrobium denitrificans ATCC 51888 glutamate 5-kinase YP_003754352.1 203152 D 582899 CDS YP_003754353.1 300021742 9386082 204315..205601 1 NC_014313.1 KEGG: atc:AGR_C_5042 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 205601 9386082 Hden_0207 Hyphomicrobium denitrificans ATCC 51888 gamma-glutamyl phosphate reductase YP_003754353.1 204315 D 582899 CDS YP_003754354.1 300021743 9386083 205680..206279 1 NC_014313.1 PFAM: cytidylyltransferase; manually curated; KEGG: smd:Smed_3012 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 206279 9386083 Hden_0208 Hyphomicrobium denitrificans ATCC 51888 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003754354.1 205680 D 582899 CDS YP_003754355.1 300021744 9386084 206424..206852 1 NC_014313.1 KEGG: pla:Plav_1476 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap-like protein 206852 9386084 Hden_0209 Hyphomicrobium denitrificans ATCC 51888 iojap-like protein YP_003754355.1 206424 D 582899 CDS YP_003754356.1 300021745 9386085 207016..207498 1 NC_014313.1 PFAM: protein of unknown function DUF163; KEGG: mlo:mll4004 rRNA large subunit methyltransferase; hypothetical protein 207498 9386085 Hden_0210 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754356.1 207016 D 582899 CDS YP_003754357.1 300021746 9386086 207505..208041 1 NC_014313.1 KEGG: fjo:Fjoh_4322 G:T/U mismatch-specific DNA glycosylase-like protein; G:T/U mismatch-specific DNA glycosylase-like protein 208041 9386086 Hden_0211 Hyphomicrobium denitrificans ATCC 51888 G:T/U mismatch-specific DNA glycosylase-like protein YP_003754357.1 207505 D 582899 CDS YP_003754358.1 300021747 9386087 complement(208020..208844) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: alv:Alvin_0717 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 208844 9386087 Hden_0212 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003754358.1 208020 R 582899 CDS YP_003754359.1 300021748 9386088 complement(208962..209351) 1 NC_014313.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: msl:Msil_0590 protein of unknown function DUF306 MetA and HslJ; hypothetical protein 209351 9386088 Hden_0213 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754359.1 208962 R 582899 CDS YP_003754360.1 300021749 9386089 complement(209390..211069) 1 NC_014313.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_1613 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein 211069 9386089 Hden_0214 Hyphomicrobium denitrificans ATCC 51888 acyl-CoA dehydrogenase domain-containing protein YP_003754360.1 209390 R 582899 CDS YP_003754361.1 300021750 9386090 211393..212277 1 NC_014313.1 PFAM: ribonuclease BN; KEGG: azc:AZC_4650 ribonuclease BN; ribonuclease BN 212277 9386090 Hden_0215 Hyphomicrobium denitrificans ATCC 51888 ribonuclease BN YP_003754361.1 211393 D 582899 CDS YP_003754362.1 300021751 9386091 complement(212363..213682) 1 NC_014313.1 KEGG: rsq:Rsph17025_3009 crotonyl-CoA reductase; TIGRFAM: crotonyl-CoA reductase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; crotonyl-CoA reductase 213682 9386091 Hden_0216 Hyphomicrobium denitrificans ATCC 51888 crotonyl-CoA reductase YP_003754362.1 212363 R 582899 CDS YP_003754363.1 300021752 9386092 213939..214313 1 NC_014313.1 KEGG: bur:Bcep18194_C7709 hypothetical protein; hypothetical protein 214313 9386092 Hden_0217 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754363.1 213939 D 582899 CDS YP_003754364.1 300021753 9386093 214450..216465 1 NC_014313.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: xau:Xaut_1197 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase, large subunit 216465 9386093 Hden_0218 Hyphomicrobium denitrificans ATCC 51888 methylmalonyl-CoA mutase, large subunit YP_003754364.1 214450 D 582899 CDS YP_003754365.1 300021754 9386094 216663..217013 1 NC_014313.1 KEGG: rop:ROP_59940 GTP-binding protein TypA; hypothetical protein 217013 9386094 Hden_0219 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754365.1 216663 D 582899 CDS YP_003754366.1 300021755 9386096 complement(217247..218632) 1 NC_014313.1 PFAM: O-antigen polymerase; KEGG: azl:AZL_d00270 hypothetical protein; O-antigen polymerase 218632 9386096 Hden_0220 Hyphomicrobium denitrificans ATCC 51888 O-antigen polymerase YP_003754366.1 217247 R 582899 CDS YP_003754367.1 300021756 9386097 complement(218793..219944) 1 NC_014313.1 PFAM: glycoside hydrolase; KEGG: mag:amb1842 beta-glucosidase-related glycosidase; glycoside hydrolase 219944 9386097 Hden_0221 Hyphomicrobium denitrificans ATCC 51888 glycoside hydrolase YP_003754367.1 218793 R 582899 CDS YP_003754368.1 300021757 9386098 complement(219994..221070) 1 NC_014313.1 PFAM: regulatory protein LysR; KEGG: bja:bll3775 formate dehydrogenase; LysR family transcriptional regulator 221070 9386098 Hden_0222 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754368.1 219994 R 582899 CDS YP_003754369.1 300021758 9386099 221380..222543 1 NC_014313.1 KEGG: msl:Msil_0927 hypothetical protein; hypothetical protein 222543 9386099 Hden_0223 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754369.1 221380 D 582899 CDS YP_003754370.1 300021759 9386100 complement(222616..223863) 1 NC_014313.1 KEGG: mrd:Mrad2831_2947 hypothetical protein; hypothetical protein 223863 9386100 Hden_0224 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754370.1 222616 R 582899 CDS YP_003754371.1 300021760 9386101 complement(224117..225310) 1 NC_014313.1 PFAM: Di-haem cytochrome C peroxidase; KEGG: atc:AGR_C_5068 hypothetical protein; Di-heme cytochrome C peroxidase 225310 9386101 Hden_0225 Hyphomicrobium denitrificans ATCC 51888 Di-heme cytochrome C peroxidase YP_003754371.1 224117 R 582899 CDS YP_003754372.1 300021761 9386102 complement(225307..225852) 1 NC_014313.1 KEGG: rpt:Rpal_1625 hypothetical protein; hypothetical protein 225852 9386102 Hden_0226 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754372.1 225307 R 582899 CDS YP_003754373.1 300021762 9386103 complement(225872..228130) 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_2970 TonB-dependent receptor; TonB-dependent receptor 228130 9386103 Hden_0227 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003754373.1 225872 R 582899 CDS YP_003754374.1 300021763 9386104 228634..229065 1 NC_014313.1 KEGG: mrd:Mrad2831_4479 CrcB protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 229065 9386104 Hden_0228 Hyphomicrobium denitrificans ATCC 51888 CrcB protein YP_003754374.1 228634 D 582899 CDS YP_003754375.1 300021764 9386105 complement(229068..230060) 1 NC_014313.1 KEGG: msl:Msil_3037 methyltransferase; TIGRFAM: methyltransferase; PFAM: protein of unknown function DUF2260; methyltransferase 230060 9386105 Hden_0229 Hyphomicrobium denitrificans ATCC 51888 methyltransferase YP_003754375.1 229068 R 582899 CDS YP_003754376.1 300021765 9386106 complement(230060..231361) 1 NC_014313.1 PFAM: protein of unknown function DUF323; KEGG: msl:Msil_3038 protein of unknown function DUF323; hypothetical protein 231361 9386106 Hden_0230 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754376.1 230060 R 582899 CDS YP_003754377.1 300021766 9386107 complement(231671..232033) 1 NC_014313.1 PFAM: protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein; hypothetical protein 232033 9386107 Hden_0231 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754377.1 231671 R 582899 CDS YP_003754378.1 300021767 9386109 232709..233656 1 NC_014313.1 KEGG: pla:Plav_1262 alpha/beta hydrolase fold; manually curated; PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 233656 9386109 Hden_0232 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003754378.1 232709 D 582899 CDS YP_003754379.1 300021768 9386110 complement(233634..234509) 1 NC_014313.1 PFAM: protein of unknown function DUF2189, transmembrane; KEGG: rhi:NGR_c15150 hypothetical protein; hypothetical protein 234509 9386110 Hden_0233 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754379.1 233634 R 582899 CDS YP_003754380.1 300021769 9386111 235038..235529 1 NC_014313.1 PFAM: MraZ domain; KEGG: bid:Bind_0683 hypothetical protein; MraZ domain-containing protein 235529 9386111 Hden_0234 Hyphomicrobium denitrificans ATCC 51888 MraZ domain-containing protein YP_003754380.1 235038 D 582899 CDS YP_003754381.1 300021770 9386112 235526..236563 1 NC_014313.1 KEGG: azc:AZC_4546 methyltransferase; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 236563 9386112 Hden_0235 Hyphomicrobium denitrificans ATCC 51888 S-adenosyl-methyltransferase MraW YP_003754381.1 235526 D 582899 CDS YP_003754382.1 300021771 9386113 236604..236900 1 NC_014313.1 KEGG: mch:Mchl_5103 hypothetical protein; hypothetical protein 236900 9386113 Hden_0236 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754382.1 236604 D 582899 CDS YP_003754383.1 300021772 9386114 236890..238566 1 NC_014313.1 KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; peptidoglycan glycosyltransferase 238566 9386114 Hden_0237 Hyphomicrobium denitrificans ATCC 51888 peptidoglycan glycosyltransferase YP_003754383.1 236890 D 582899 CDS YP_003754384.1 300021773 9386115 238684..240129 1 NC_014313.1 KEGG: mrd:Mrad2831_2362 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; UDP-N-acetylmuramyl-tripeptide synthetase 240129 9386115 Hden_0238 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylmuramyl-tripeptide synthetase YP_003754384.1 238684 D 582899 CDS YP_003754385.1 300021774 9386116 240134..241537 1 NC_014313.1 KEGG: met:M446_0259 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 241537 9386116 Hden_0239 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_003754385.1 240134 D 582899 CDS YP_003754386.1 300021775 9386117 241582..242664 1 NC_014313.1 KEGG: azc:AZC_4541 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 242664 9386117 Hden_0240 Hyphomicrobium denitrificans ATCC 51888 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_003754386.1 241582 D 582899 CDS YP_003754387.1 300021776 9386118 242806..244221 1 NC_014313.1 KEGG: mch:Mchl_5098 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanine/D-glutamate ligase 244221 9386118 Hden_0241 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylmuramoylalanine/D-glutamate ligase YP_003754387.1 242806 D 582899 CDS YP_003754388.1 300021777 9386119 244218..245399 1 NC_014313.1 PFAM: cell cycle protein; KEGG: xau:Xaut_1190 cell division protein FtsW; cell cycle protein 245399 9386119 Hden_0242 Hyphomicrobium denitrificans ATCC 51888 cell cycle protein YP_003754388.1 244218 D 582899 CDS YP_003754389.1 300021778 9386120 245410..246537 1 NC_014313.1 KEGG: azc:AZC_4555 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 246537 9386120 Hden_0243 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_003754389.1 245410 D 582899 CDS YP_003754390.1 300021779 9386121 246597..248033 1 NC_014313.1 KEGG: mno:Mnod_7442 UDP-N-acetylmuramate/alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate/alanine ligase 248033 9386121 Hden_0244 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylmuramate/alanine ligase YP_003754390.1 246597 D 582899 CDS YP_003754391.1 300021780 9386122 248033..249013 1 NC_014313.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: azc:AZC_4560 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase 249013 9386122 Hden_0245 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylenolpyruvoylglucosamine reductase YP_003754391.1 248033 D 582899 CDS YP_003754392.1 300021781 9386123 249041..249994 1 NC_014313.1 TIGRFAM: D-alanine/D-alanine ligase; KEGG: mno:Mnod_7439 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine/D-alanine ligase 249994 9386123 Hden_0246 Hyphomicrobium denitrificans ATCC 51888 D-alanine/D-alanine ligase YP_003754392.1 249041 D 582899 CDS YP_003754393.1 300021782 9386124 249982..250986 1 NC_014313.1 PFAM: polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: mlo:mll1550 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein FtsQ-type 250986 9386124 Hden_0247 Hyphomicrobium denitrificans ATCC 51888 polypeptide-transport-associated domain-containing protein FtsQ-type YP_003754393.1 249982 D 582899 CDS YP_003754394.1 300021783 9386125 250997..252253 1 NC_014313.1 TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: xau:Xaut_0327 cell division protein FtsA; SMART: cell division protein FtsA; cell division protein FtsA 252253 9386125 Hden_0248 Hyphomicrobium denitrificans ATCC 51888 cell division protein FtsA YP_003754394.1 250997 D 582899 CDS YP_003754395.1 300021784 9386126 252323..253942 1 NC_014313.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: rlt:Rleg2_2586 cell division protein FtsZ; SMART: Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 253942 9386126 Hden_0249 Hyphomicrobium denitrificans ATCC 51888 cell division protein FtsZ YP_003754395.1 252323 D 582899 CDS YP_003754396.1 300021785 9386127 254211..255155 1 NC_014313.1 KEGG: met:M446_6696 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 255155 9386127 Hden_0250 Hyphomicrobium denitrificans ATCC 51888 UDP-3-0-acyl N-acetylglucosamine deacetylase YP_003754396.1 254211 D 582899 CDS YP_003754397.1 300021786 9386128 255288..256217 1 NC_014313.1 TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: mlo:mll1543 hypothetical protein; outer membrane assembly lipoprotein YfiO 256217 9386128 Hden_0251 Hyphomicrobium denitrificans ATCC 51888 outer membrane assembly lipoprotein YfiO YP_003754397.1 255288 D 582899 CDS YP_003754398.1 300021787 9386129 256309..258447 1 NC_014313.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; NAD-dependent DNA ligase OB-fold; KEGG: xau:Xaut_1762 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; DNA ligase, NAD-dependent 258447 9386129 Hden_0252 Hyphomicrobium denitrificans ATCC 51888 DNA ligase, NAD-dependent YP_003754398.1 256309 D 582899 CDS YP_003754399.1 300021788 9386130 complement(258474..260285) 1 NC_014313.1 PFAM: peptidase M24; creatinase; KEGG: pla:Plav_2434 peptidase M24; peptidase M24 260285 9386130 Hden_0253 Hyphomicrobium denitrificans ATCC 51888 peptidase M24 YP_003754399.1 258474 R 582899 CDS YP_003754400.1 300021789 9386131 complement(260329..261204) 1 NC_014313.1 PFAM: ribosomal L11 methyltransferase; KEGG: pde:Pden_0622 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase 261204 9386131 Hden_0254 Hyphomicrobium denitrificans ATCC 51888 ribosomal L11 methyltransferase YP_003754400.1 260329 R 582899 CDS YP_003754401.1 300021790 9386132 complement(261210..262673) 1 NC_014313.1 KEGG: psl:Psta_4598 hypothetical protein; hypothetical protein 262673 9386132 Hden_0255 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754401.1 261210 R 582899 CDS YP_003754402.1 300021791 9386133 262984..264252 1 NC_014313.1 KEGG: ava:Ava_2736 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 264252 9386133 Hden_0256 Hyphomicrobium denitrificans ATCC 51888 heat shock protein DnaJ domain-containing protein YP_003754402.1 262984 D 582899 CDS YP_003754403.1 300021792 9386134 complement(264384..264581) 1 NC_014313.1 hypothetical protein 264581 9386134 Hden_0257 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754403.1 264384 R 582899 CDS YP_003754404.1 300021793 9386135 complement(264847..267303) 1 NC_014313.1 PFAM: UvrD/REP helicase; KEGG: azc:AZC_4475 DNA helicase II; UvrD/REP helicase 267303 9386135 Hden_0258 Hyphomicrobium denitrificans ATCC 51888 UvrD/REP helicase YP_003754404.1 264847 R 582899 CDS YP_003754405.1 300021794 9386136 267541..271548 1 NC_014313.1 PFAM: AsmA family protein; KEGG: mlo:mll1482 hypothetical protein; AsmA family protein 271548 9386136 Hden_0259 Hyphomicrobium denitrificans ATCC 51888 AsmA family protein YP_003754405.1 267541 D 582899 CDS YP_003754406.1 300021795 9386137 complement(271563..271793) 1 NC_014313.1 KEGG: nha:Nham_2735 arylsulfate sulfotransferase-related protein; arylsulfate sulfotransferase-like protein 271793 9386137 Hden_0260 Hyphomicrobium denitrificans ATCC 51888 arylsulfate sulfotransferase-like protein YP_003754406.1 271563 R 582899 CDS YP_003754407.1 300021796 9386138 complement(271793..272008) 1 NC_014313.1 KEGG: sjp:SJA_C1-31150 hypothetical protein; hypothetical protein 272008 9386138 Hden_0261 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754407.1 271793 R 582899 CDS YP_003754408.1 300021797 9386139 complement(272120..273511) 1 NC_014313.1 KEGG: pla:Plav_2445 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; fumarate hydratase, class II 273511 9386139 Hden_0262 Hyphomicrobium denitrificans ATCC 51888 fumarate hydratase, class II YP_003754408.1 272120 R 582899 CDS YP_003754409.1 300021798 9386140 complement(273646..273972) 1 NC_014313.1 KEGG: afw:Anae109_0406 DEAD/DEAH box helicase domain-containing protein; hypothetical protein 273972 9386140 Hden_0263 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754409.1 273646 R 582899 CDS YP_003754410.1 300021799 9386141 274446..275912 1 NC_014313.1 PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: rec:RHECIAT_CH0002049 hypothetical protein; hypothetical protein 275912 9386141 Hden_0264 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754410.1 274446 D 582899 CDS YP_003754411.1 300021800 9386142 276112..276813 1 NC_014313.1 PFAM: methyltransferase type 12; KEGG: swi:Swit_2164 methyltransferase type 12; type 12 methyltransferase 276813 9386142 Hden_0265 Hyphomicrobium denitrificans ATCC 51888 type 12 methyltransferase YP_003754411.1 276112 D 582899 CDS YP_003754412.1 300021801 9386143 complement(276876..277535) 1 NC_014313.1 PFAM: protein of unknown function DUF1321; KEGG: xau:Xaut_1418 hypothetical protein; hypothetical protein 277535 9386143 Hden_0266 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754412.1 276876 R 582899 CDS YP_003754413.1 300021802 9386144 278114..278899 1 NC_014313.1 PFAM: hypothetical protein; KEGG: amr:AM1_2826 CAAX amino terminal protease family protein; hypothetical protein 278899 9386144 Hden_0267 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754413.1 278114 D 582899 CDS YP_003754414.1 300021803 9386145 278950..279744 1 NC_014313.1 TIGRFAM: thymidylate synthase; KEGG: pla:Plav_2448 thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 279744 9386145 Hden_0268 Hyphomicrobium denitrificans ATCC 51888 thymidylate synthase YP_003754414.1 278950 D 582899 CDS YP_003754415.1 300021804 9386146 complement(279794..280162) 1 NC_014313.1 manually curated; KEGG: mes:Meso_1247 hypothetical protein; hypothetical protein 280162 9386146 Hden_0269 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754415.1 279794 R 582899 CDS YP_003754416.1 300021805 9386147 280403..280915 1 NC_014313.1 KEGG: oan:Oant_1793 dihydrofolate reductase; PFAM: dihydrofolate reductase region; dihydrofolate reductase 280915 9386147 Hden_0270 Hyphomicrobium denitrificans ATCC 51888 dihydrofolate reductase YP_003754416.1 280403 D 582899 CDS YP_003754417.1 300021806 9386148 281172..282344 1 NC_014313.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: bja:bll6509 membrane bound protease protein; SMART: band 7 protein; HflK protein 282344 9386148 Hden_0271 Hyphomicrobium denitrificans ATCC 51888 HflK protein YP_003754417.1 281172 D 582899 CDS YP_003754418.1 300021807 9386149 282346..283257 1 NC_014313.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: azc:AZC_2570 HflC protein precursor; SMART: band 7 protein; HflC protein 283257 9386149 Hden_0272 Hyphomicrobium denitrificans ATCC 51888 HflC protein YP_003754418.1 282346 D 582899 CDS YP_003754419.1 300021808 9386150 283254..283439 1 NC_014313.1 PFAM: protein of unknown function DUF2065; KEGG: pla:Plav_2460 hypothetical protein; hypothetical protein 283439 9386150 Hden_0273 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754419.1 283254 D 582899 CDS YP_003754420.1 300021809 9386151 283571..285034 1 NC_014313.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: azc:AZC_2572 serine protease DO-like protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 285034 9386151 Hden_0274 Hyphomicrobium denitrificans ATCC 51888 protease Do YP_003754420.1 283571 D 582899 CDS YP_003754421.1 300021810 9386152 285078..285791 1 NC_014313.1 TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: rpe:RPE_2008 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase-like protein 285791 9386152 Hden_0275 Hyphomicrobium denitrificans ATCC 51888 phosphatidylserine decarboxylase-like protein YP_003754421.1 285078 D 582899 CDS YP_003754422.1 300021811 9386153 285888..286835 1 NC_014313.1 KEGG: rpe:RPE_2009 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 286835 9386153 Hden_0276 Hyphomicrobium denitrificans ATCC 51888 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_003754422.1 285888 D 582899 CDS YP_003754423.1 300021812 9386154 complement(286842..288287) 1 NC_014313.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 288287 9386154 Hden_0277 Hyphomicrobium denitrificans ATCC 51888 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003754423.1 286842 R 582899 CDS YP_003754424.1 300021813 9386155 complement(288425..290434) 1 NC_014313.1 PFAM: protein of unknown function DUF87; KEGG: pla:Plav_1359 hypothetical protein; hypothetical protein 290434 9386155 Hden_0278 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754424.1 288425 R 582899 CDS YP_003754425.1 300021814 9386156 complement(290457..291341) 1 NC_014313.1 KEGG: pla:Plav_1358 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase 291341 9386156 Hden_0279 Hyphomicrobium denitrificans ATCC 51888 histidine kinase YP_003754425.1 290457 R 582899 CDS YP_003754426.1 300021815 9386157 complement(291538..292260) 1 NC_014313.1 TIGRFAM: TonB family protein; KEGG: nhl:Nhal_1797 TonB family protein; TonB family protein 292260 9386157 Hden_0280 Hyphomicrobium denitrificans ATCC 51888 TonB family protein YP_003754426.1 291538 R 582899 CDS YP_003754427.1 300021816 9386158 complement(292280..292732) 1 NC_014313.1 PFAM: biopolymertransporter ExbD/TolR; KEGG: rru:Rru_A2154 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR 292732 9386158 Hden_0281 Hyphomicrobium denitrificans ATCC 51888 biopolymertransporter ExbD/TolR YP_003754427.1 292280 R 582899 CDS YP_003754428.1 300021817 9386159 complement(292732..293415) 1 NC_014313.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mno:Mnod_1395 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 293415 9386159 Hden_0282 Hyphomicrobium denitrificans ATCC 51888 MotA/TolQ/ExbB proton channel YP_003754428.1 292732 R 582899 CDS YP_003754429.1 300021818 9386160 complement(293419..293958) 1 NC_014313.1 KEGG: mex:Mext_1619 hypothetical protein; hypothetical protein 293958 9386160 Hden_0283 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754429.1 293419 R 582899 CDS YP_003754430.1 300021819 9386161 complement(294188..295879) 1 NC_014313.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pla:Plav_1906 non-specific protein-tyrosine kinase; lipopolysaccharide biosynthesis protein 295879 9386161 Hden_0284 Hyphomicrobium denitrificans ATCC 51888 lipopolysaccharide biosynthesis protein YP_003754430.1 294188 R 582899 CDS YP_003754431.1 300021820 9386162 complement(296005..296379) 1 NC_014313.1 KEGG: dre:796666 hypothetical protein LOC796666; hypothetical protein 296379 9386162 Hden_0285 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754431.1 296005 R 582899 CDS YP_003754432.1 300021821 9386163 296575..297543 1 NC_014313.1 KEGG: pla:Plav_2807 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; glycerate dehydrogenase 297543 9386163 Hden_0286 Hyphomicrobium denitrificans ATCC 51888 glycerate dehydrogenase YP_003754432.1 296575 D 582899 CDS YP_003754433.1 300021822 9386164 297568..297675 1 NC_014313.1 hypothetical protein 297675 9386164 Hden_0287 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754433.1 297568 D 582899 CDS YP_003754434.1 300021823 9386165 complement(297910..298200) 1 NC_014313.1 KEGG: rpa:RPA3811 excinuclease ABC subunit C; PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain-containing protein 298200 9386165 Hden_0288 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC C subunit domain-containing protein YP_003754434.1 297910 R 582899 CDS YP_003754435.1 300021824 9386166 complement(298245..299585) 1 NC_014313.1 PFAM: amidase; KEGG: mes:Meso_0343 amidase; amidase 299585 9386166 Hden_0289 Hyphomicrobium denitrificans ATCC 51888 amidase YP_003754435.1 298245 R 582899 CDS YP_003754436.1 300021825 9386167 299831..301033 1 NC_014313.1 PFAM: aminotransferase class V; KEGG: bpt:Bpet4350 serine-glyoxylate aminotransferase-related; class V aminotransferase 301033 9386167 Hden_0290 Hyphomicrobium denitrificans ATCC 51888 class V aminotransferase YP_003754436.1 299831 D 582899 CDS YP_003754437.1 300021826 9386168 complement(301074..301400) 1 NC_014313.1 KEGG: mes:Meso_1752 hypothetical protein; hypothetical protein 301400 9386168 Hden_0291 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754437.1 301074 R 582899 CDS YP_003754438.1 300021827 9386169 complement(301517..301906) 1 NC_014313.1 KEGG: xau:Xaut_1526 hypothetical protein; hypothetical protein 301906 9386169 Hden_0292 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754438.1 301517 R 582899 CDS YP_003754439.1 300021828 9386170 complement(302079..302738) 1 NC_014313.1 PFAM: protein of unknown function DUF1007; KEGG: rpe:RPE_4805 hypothetical protein; hypothetical protein 302738 9386170 Hden_0293 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754439.1 302079 R 582899 CDS YP_003754440.1 300021829 9386171 302845..303909 1 NC_014313.1 PFAM: periplasmic solute binding protein; KEGG: rec:RHECIAT_CH0002848 zinc uptake ABC transporter substrate-binding protein; periplasmic solute binding protein 303909 9386171 Hden_0294 Hyphomicrobium denitrificans ATCC 51888 periplasmic solute binding protein YP_003754440.1 302845 D 582899 CDS YP_003754441.1 300021830 9386172 complement(303975..304679) 1 NC_014313.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_0202 two component transcriptional regulator; SMART: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator PhoB, winged helix family 304679 9386172 Hden_0295 Hyphomicrobium denitrificans ATCC 51888 two component transcriptional regulator PhoB, winged helix family YP_003754441.1 303975 R 582899 CDS YP_003754442.1 300021831 9386173 complement(304704..305417) 1 NC_014313.1 KEGG: mno:Mnod_7424 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 305417 9386173 Hden_0296 Hyphomicrobium denitrificans ATCC 51888 phosphate uptake regulator PhoU YP_003754442.1 304704 R 582899 CDS YP_003754443.1 300021832 9386174 complement(305459..306247) 1 NC_014313.1 TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; KEGG: bid:Bind_3411 phosphate ABC transporter ATPase subunit; SMART: ATPase AAA; phosphate ABC transporter ATPase 306247 9386174 Hden_0297 Hyphomicrobium denitrificans ATCC 51888 phosphate ABC transporter ATPase YP_003754443.1 305459 R 582899 CDS YP_003754444.1 300021833 9386175 complement(306244..307095) 1 NC_014313.1 KEGG: mlo:mll3720 phosphate transporter permease protein PstA; TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; phosphate ABC transporter inner membrane subunit PstA 307095 9386175 Hden_0298 Hyphomicrobium denitrificans ATCC 51888 phosphate ABC transporter inner membrane subunit PstA YP_003754444.1 306244 R 582899 CDS YP_003754445.1 300021834 9386176 complement(307097..308089) 1 NC_014313.1 KEGG: msl:Msil_0838 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; phosphate ABC transporter inner membrane subunit PstC 308089 9386176 Hden_0299 Hyphomicrobium denitrificans ATCC 51888 phosphate ABC transporter inner membrane subunit PstC YP_003754445.1 307097 R 582899 CDS YP_003754446.1 300021835 9386177 complement(308169..309212) 1 NC_014313.1 KEGG: azl:AZL_e02450 phosphate transporter substrate-binding protein; TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; phosphate ABC transporter periplasmic phosphate-binding protein 309212 9386177 Hden_0300 Hyphomicrobium denitrificans ATCC 51888 phosphate ABC transporter periplasmic phosphate-binding protein YP_003754446.1 308169 R 582899 CDS YP_003754447.1 300021836 9386178 complement(309559..310845) 1 NC_014313.1 KEGG: met:M446_1659 histidine kinase; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 310845 9386178 Hden_0301 Hyphomicrobium denitrificans ATCC 51888 multi-sensor signal transduction histidine kinase YP_003754447.1 309559 R 582899 CDS YP_003754448.1 300021837 9386179 complement(310863..311360) 1 NC_014313.1 KEGG: bcm:Bcenmc03_1872 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 311360 9386179 Hden_0302 Hyphomicrobium denitrificans ATCC 51888 BadM/Rrf2 family transcriptional regulator YP_003754448.1 310863 R 582899 CDS YP_003754449.1 300021838 9386180 311602..312885 1 NC_014313.1 PFAM: peptidase M75, Imelysin; KEGG: azc:AZC_2744 uncharacterized iron-regulated protein; peptidase M75, Imelysin 312885 9386180 Hden_0303 Hyphomicrobium denitrificans ATCC 51888 peptidase M75, Imelysin YP_003754449.1 311602 D 582899 CDS YP_003754450.1 300021839 9386181 312968..314395 1 NC_014313.1 PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: azl:AZL_c02540 multicopper oxidase type 3; multicopper oxidase type 3 314395 9386181 Hden_0304 Hyphomicrobium denitrificans ATCC 51888 multicopper oxidase type 3 YP_003754450.1 312968 D 582899 CDS YP_003754451.1 300021840 9386182 314392..315573 1 NC_014313.1 PFAM: protein of unknown function DUF1111; KEGG: azc:AZC_2746 thiol oxidoreductase; hypothetical protein 315573 9386182 Hden_0305 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754451.1 314392 D 582899 CDS YP_003754452.1 300021841 9386183 315570..316637 1 NC_014313.1 PFAM: peptidase M75, Imelysin; KEGG: bpt:Bpet3463 hypothetical protein; peptidase M75, Imelysin 316637 9386183 Hden_0306 Hyphomicrobium denitrificans ATCC 51888 peptidase M75, Imelysin YP_003754452.1 315570 D 582899 CDS YP_003754453.1 300021842 9386184 316618..317730 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: bpe:BP1558 hypothetical protein; hypothetical protein 317730 9386184 Hden_0307 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754453.1 316618 D 582899 CDS YP_003754454.1 300021843 9386185 317824..319209 1 NC_014313.1 TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM protein; KEGG: rce:RC1_0705 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 319209 9386185 Hden_0308 Hyphomicrobium denitrificans ATCC 51888 MiaB-like tRNA modifying protein YliG YP_003754454.1 317824 D 582899 CDS YP_003754455.1 300021844 9386186 complement(319206..320228) 1 NC_014313.1 KEGG: mno:Mnod_2658 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 320228 9386186 Hden_0309 Hyphomicrobium denitrificans ATCC 51888 cation diffusion facilitator family transporter YP_003754455.1 319206 R 582899 CDS YP_003754456.1 300021845 9386187 320337..321287 1 NC_014313.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: alv:Alvin_0692 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 321287 9386187 Hden_0310 Hyphomicrobium denitrificans ATCC 51888 membrane-bound metal-dependent hydrolase YP_003754456.1 320337 D 582899 CDS YP_003754457.1 300021846 9386188 complement(321256..321864) 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: vex:VEA_004024 transcriptional regulator; TetR family transcriptional regulator 321864 9386188 Hden_0311 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754457.1 321256 R 582899 CDS YP_003754458.1 300021847 9386189 complement(322106..322738) 1 NC_014313.1 KEGG: pla:Plav_0225 TadE family protein; hypothetical protein 322738 9386189 Hden_0312 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754458.1 322106 R 582899 CDS YP_003754459.1 300021848 9386190 complement(322743..323363) 1 NC_014313.1 PFAM: TadE family protein; KEGG: bja:blr3942 hypothetical protein; TadE family protein 323363 9386190 Hden_0313 Hyphomicrobium denitrificans ATCC 51888 TadE family protein YP_003754459.1 322743 R 582899 CDS YP_003754460.1 300021849 9386191 complement(323534..324046) 1 NC_014313.1 KEGG: bja:blr1444 hypothetical protein; hypothetical protein 324046 9386191 Hden_0314 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754460.1 323534 R 582899 CDS YP_003754461.1 300021850 9386192 324599..324778 1 NC_014313.1 PFAM: Flp/Fap pilin component; KEGG: nwi:Nwi_0304 Flp/Fap pilin component; Flp/Fap pilin component 324778 9386192 Hden_0315 Hyphomicrobium denitrificans ATCC 51888 Flp/Fap pilin component YP_003754461.1 324599 D 582899 CDS YP_003754462.1 300021851 9386193 324871..325047 1 NC_014313.1 PFAM: Flp/Fap pilin component; KEGG: las:CLIBASIA_03100 hypothetical protein; Flp/Fap pilin component 325047 9386193 Hden_0316 Hyphomicrobium denitrificans ATCC 51888 Flp/Fap pilin component YP_003754462.1 324871 D 582899 CDS YP_003754463.1 300021852 9386194 325142..325651 1 NC_014313.1 PFAM: peptidase A24A prepilin type IV; KEGG: oca:OCAR_7418 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 325651 9386194 Hden_0317 Hyphomicrobium denitrificans ATCC 51888 peptidase A24A prepilin type IV YP_003754463.1 325142 D 582899 CDS YP_003754464.1 300021853 9386195 325812..326615 1 NC_014313.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB; SMART: SAF domain protein; Flp pilus assembly protein CpaB 326615 9386195 Hden_0318 Hyphomicrobium denitrificans ATCC 51888 Flp pilus assembly protein CpaB YP_003754464.1 325812 D 582899 CDS YP_003754465.1 300021854 9386196 326654..328306 1 NC_014313.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: pla:Plav_0233 type II and III secretion system protein; type II and III secretion system protein 328306 9386196 Hden_0319 Hyphomicrobium denitrificans ATCC 51888 type II and III secretion system protein YP_003754465.1 326654 D 582899 CDS YP_003754466.1 300021855 9386197 328326..329063 1 NC_014313.1 KEGG: pla:Plav_0234 pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: pilus biogenesis CpaD-related; pilus (Caulobacter type) biogenesis lipoprotein CpaD 329063 9386197 Hden_0320 Hyphomicrobium denitrificans ATCC 51888 pilus (Caulobacter type) biogenesis lipoprotein CpaD YP_003754466.1 328326 D 582899 CDS YP_003754467.1 300021856 9386198 329076..330380 1 NC_014313.1 KEGG: pla:Plav_0235 response regulator receiver protein; response regulator receiver protein 330380 9386198 Hden_0321 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003754467.1 329076 D 582899 CDS YP_003754468.1 300021857 9386199 330390..331874 1 NC_014313.1 PFAM: type II secretion system protein E; KEGG: mno:Mnod_2830 type II secretion system protein E; type II secretion system protein E 331874 9386199 Hden_0322 Hyphomicrobium denitrificans ATCC 51888 type II secretion system protein E YP_003754468.1 330390 D 582899 CDS YP_003754469.1 300021858 9386200 331858..332856 1 NC_014313.1 PFAM: type II secretion system F domain; KEGG: pla:Plav_0237 type II secretion system protein; type II secretion system protein F 332856 9386200 Hden_0323 Hyphomicrobium denitrificans ATCC 51888 type II secretion system protein F YP_003754469.1 331858 D 582899 CDS YP_003754470.1 300021859 9386201 332896..333876 1 NC_014313.1 PFAM: type II secretion system F domain; KEGG: pla:Plav_0238 type II secretion system protein; type II secretion system protein F 333876 9386201 Hden_0324 Hyphomicrobium denitrificans ATCC 51888 type II secretion system protein F YP_003754470.1 332896 D 582899 CDS YP_003754471.1 300021860 9386202 complement(334006..334989) 1 NC_014313.1 PFAM: hypothetical protein; KEGG: rpe:RPE_3757 hypothetical protein; hypothetical protein 334989 9386202 Hden_0325 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754471.1 334006 R 582899 CDS YP_003754472.1 300021861 9386203 335189..336610 1 NC_014313.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: mex:Mext_2976 leucyl aminopeptidase; peptidase M17 leucyl aminopeptidase domain-containing protein 336610 9386203 Hden_0326 Hyphomicrobium denitrificans ATCC 51888 peptidase M17 leucyl aminopeptidase domain-containing protein YP_003754472.1 335189 D 582899 CDS YP_003754473.1 300021862 9386204 336607..337500 1 NC_014313.1 PFAM: NLP/P60 protein; KEGG: mno:Mnod_1116 NLP/P60 protein; NLP/P60 protein 337500 9386204 Hden_0327 Hyphomicrobium denitrificans ATCC 51888 NLP/P60 protein YP_003754473.1 336607 D 582899 CDS YP_003754474.1 300021863 9386205 complement(337497..337961) 1 NC_014313.1 KEGG: mag:amb1098 hypothetical protein; hypothetical protein 337961 9386205 Hden_0328 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754474.1 337497 R 582899 CDS YP_003754475.1 300021864 9386206 338143..339195 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: gau:GAU_3415 hypothetical protein; alpha/beta hydrolase fold protein 339195 9386206 Hden_0329 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003754475.1 338143 D 582899 CDS YP_003754476.1 300021865 9386207 339316..340185 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: azo:azo3542 glutathione transferase; glutathione S-transferase 340185 9386207 Hden_0330 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003754476.1 339316 D 582899 CDS YP_003754477.1 300021866 9386208 complement(340215..341321) 1 NC_014313.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; KEGG: sus:acid_4009 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 341321 9386208 Hden_0331 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003754477.1 340215 R 582899 CDS YP_003754478.1 300021867 9386209 341776..342219 1 NC_014313.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2084 YeeE/YedE family protein; hypothetical protein 342219 9386209 Hden_0332 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754478.1 341776 D 582899 CDS YP_003754479.1 300021868 9386210 342216..342635 1 NC_014313.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein; hypothetical protein 342635 9386210 Hden_0333 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754479.1 342216 D 582899 CDS YP_003754480.1 300021869 9386211 complement(342686..343264) 1 NC_014313.1 KEGG: dsh:Dshi_4226 hypothetical protein; hypothetical protein 343264 9386211 Hden_0334 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754480.1 342686 R 582899 CDS YP_003754481.1 300021870 9386212 complement(343281..344306) 1 NC_014313.1 KEGG: YVTN beta-propeller repeat family protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; SMART: WD-40 repeat protein; 40-residue YVTN family beta-propeller repeat protein 344306 9386212 Hden_0335 Hyphomicrobium denitrificans ATCC 51888 40-residue YVTN family beta-propeller repeat protein YP_003754481.1 343281 R 582899 CDS YP_003754482.1 300021871 9386213 344572..345003 1 NC_014313.1 KEGG: mrd:Mrad2831_2411 cytochrome C550; cytochrome C550 345003 9386213 Hden_0336 Hyphomicrobium denitrificans ATCC 51888 cytochrome C550 YP_003754482.1 344572 D 582899 CDS YP_003754483.1 300021872 9386214 345013..345903 1 NC_014313.1 PFAM: extracellular solute-binding protein family 3; KEGG: azl:AZL_a05230 extracellular solute-binding protein; family 3 extracellular solute-binding protein 345903 9386214 Hden_0337 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003754483.1 345013 D 582899 CDS YP_003754484.1 300021873 9386215 345962..346750 1 NC_014313.1 KEGG: tmz:Tmz1t_2818 hypothetical protein; hypothetical protein 346750 9386215 Hden_0338 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754484.1 345962 D 582899 CDS YP_003754485.1 300021874 9386216 346747..347715 1 NC_014313.1 SMART: beta-lactamase; KEGG: swi:Swit_0686 beta-lactamase domain-containing protein; beta-lactamase 347715 9386216 Hden_0339 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003754485.1 346747 D 582899 CDS YP_003754486.1 300021875 9386217 347886..349649 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mch:Mchl_1540 PQQ-dependent dehydrogenase, methanol/ethanol family; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 349649 9386217 Hden_0340 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003754486.1 347886 D 582899 CDS YP_003754487.1 300021876 9386218 349772..350653 1 NC_014313.1 PFAM: protein of unknown function DUF1194; KEGG: mrd:Mrad2831_3936 hypothetical protein; hypothetical protein 350653 9386218 Hden_0341 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754487.1 349772 D 582899 CDS YP_003754488.1 300021877 9386219 350770..351270 1 NC_014313.1 KEGG: xop:PXO_00366 general stress protein; general stress protein 351270 9386219 Hden_0342 Hyphomicrobium denitrificans ATCC 51888 general stress protein YP_003754488.1 350770 D 582899 CDS YP_003754489.1 300021878 9386220 351267..351458 1 NC_014313.1 KEGG: xcv:XCV1419 hypothetical protein; hypothetical protein 351458 9386220 Hden_0343 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754489.1 351267 D 582899 CDS YP_003754490.1 300021879 9386221 complement(351460..352869) 1 NC_014313.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: mrd:Mrad2831_3539 uracil-DNA glycosylase superfamily protein; uracil-DNA glycosylase superfamily protein 352869 9386221 Hden_0344 Hyphomicrobium denitrificans ATCC 51888 uracil-DNA glycosylase superfamily protein YP_003754490.1 351460 R 582899 CDS YP_003754491.1 300021880 9386222 complement(352871..354073) 1 NC_014313.1 SMART: Elongator protein 3/MiaB/NifB; KEGG: mch:Mchl_2580 radical SAM domain-containing protein; Elongator protein 3/MiaB/NifB 354073 9386222 Hden_0345 Hyphomicrobium denitrificans ATCC 51888 Elongator protein 3/MiaB/NifB YP_003754491.1 352871 R 582899 CDS YP_003754492.1 300021881 9386223 complement(354241..355008) 1 NC_014313.1 PFAM: protein of unknown function DUF347; KEGG: npu:Npun_R6200 hypothetical protein; hypothetical protein 355008 9386223 Hden_0346 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754492.1 354241 R 582899 CDS YP_003754493.1 300021882 9386224 355102..355533 1 NC_014313.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_L_3039 hypothetical protein; hypothetical protein 355533 9386224 Hden_0347 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754493.1 355102 D 582899 CDS YP_003754494.1 300021883 9386225 complement(355948..356403) 1 NC_014313.1 KEGG: tcr:504839.70 hypothetical protein; hypothetical protein 356403 9386225 Hden_0348 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754494.1 355948 R 582899 CDS YP_003754495.1 300021884 9386226 356715..357392 1 NC_014313.1 KEGG: rle:RL1157 two-component response regulator transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 357392 9386226 Hden_0349 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003754495.1 356715 D 582899 CDS YP_003754496.1 300021885 9386227 357379..358776 1 NC_014313.1 KEGG: rlt:Rleg2_0703 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 358776 9386227 Hden_0350 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003754496.1 357379 D 582899 CDS YP_003754497.1 300021886 9386228 359014..360027 1 NC_014313.1 KEGG: sus:acid_5802 hypothetical protein; hypothetical protein 360027 9386228 Hden_0351 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754497.1 359014 D 582899 CDS YP_003754498.1 300021887 9386229 complement(360178..362136) 1 NC_014313.1 KEGG: ccs:CCNA_01546 DEAD-box RNA helicase-like protein; PFAM: DEAD/DEAH box helicase; helicase; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 362136 9386229 Hden_0352 Hyphomicrobium denitrificans ATCC 51888 DEAD/DEAH box helicase YP_003754498.1 360178 R 582899 CDS YP_003754499.1 300021888 9386232 complement(363939..364706) 1 NC_014313.1 KEGG: rsq:Rsph17025_4362 hypothetical protein; hypothetical protein 364706 9386232 Hden_0355 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754499.1 363939 R 582899 CDS YP_003754500.1 300021889 9386233 complement(364710..367583) 1 NC_014313.1 KEGG: rsq:Rsph17025_4361 N-6 DNA methylase; N-6 DNA methylase 367583 9386233 Hden_0356 Hyphomicrobium denitrificans ATCC 51888 N-6 DNA methylase YP_003754500.1 364710 R 582899 CDS YP_003754501.1 300021890 9386234 complement(367647..367838) 1 NC_014313.1 KEGG: mag:amb3266 hypothetical protein; hypothetical protein 367838 9386234 Hden_0357 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754501.1 367647 R 582899 CDS YP_003754502.1 300021891 9386237 complement(369153..369464) 1 NC_014313.1 KEGG: rle:pRL90162 cobalamin synthesis protein; hypothetical protein 369464 9386237 Hden_0359 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754502.1 369153 R 582899 CDS YP_003754503.1 300021892 9386238 369708..372695 1 NC_014313.1 SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; DNA-binding protein; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; TIGRFAM: DNA polymerase I; KEGG: pla:Plav_0105 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; DNA polymerase I 372695 9386238 Hden_0360 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase I YP_003754503.1 369708 D 582899 CDS YP_003754504.1 300021893 9386239 complement(372766..374148) 1 NC_014313.1 KEGG: oca:OCAR_4132 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase, intracellular 374148 9386239 Hden_0361 Hyphomicrobium denitrificans ATCC 51888 polyhydroxyalkanoate depolymerase, intracellular YP_003754504.1 372766 R 582899 CDS YP_003754505.1 300021894 9386240 374462..375754 1 NC_014313.1 KEGG: afw:Anae109_0029 major facilitator transporter; major facilitator transporter 375754 9386240 Hden_0362 Hyphomicrobium denitrificans ATCC 51888 major facilitator transporter YP_003754505.1 374462 D 582899 CDS YP_003754506.1 300021895 9386241 complement(375781..376077) 1 NC_014313.1 KEGG: bja:bsl1446 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 376077 9386241 Hden_0363 Hyphomicrobium denitrificans ATCC 51888 translation initiation factor IF-1 YP_003754506.1 375781 R 582899 CDS YP_003754507.1 300021896 9386242 complement(376191..376397) 1 NC_014313.1 KEGG: rru:Rru_A1521 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 376397 9386242 Hden_0364 Hyphomicrobium denitrificans ATCC 51888 cold-shock DNA-binding domain-containing protein YP_003754507.1 376191 R 582899 CDS YP_003754508.1 300021897 9386243 complement(376692..377135) 1 NC_014313.1 PFAM: peptidase M15A; KEGG: apa:APP7_0124 hypothetical protein; peptidase M15A 377135 9386243 Hden_0365 Hyphomicrobium denitrificans ATCC 51888 peptidase M15A YP_003754508.1 376692 R 582899 CDS YP_003754509.1 300021898 9386244 377538..377993 1 NC_014313.1 KEGG: abo:ABO_1669 hypothetical protein; hypothetical protein 377993 9386244 Hden_0366 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754509.1 377538 D 582899 CDS YP_003754510.1 300021899 9386245 378126..378383 1 NC_014313.1 KEGG: ctp:CTRG_04016 similar to potential protein kinase; hypothetical protein 378383 9386245 Hden_0367 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754510.1 378126 D 582899 CDS YP_003754511.1 300021900 9386246 378476..378748 1 NC_014313.1 KEGG: mpo:Mpop_1814 hypothetical protein; hypothetical protein 378748 9386246 Hden_0368 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754511.1 378476 D 582899 CDS YP_003754512.1 300021901 9386247 complement(378809..379153) 1 NC_014313.1 KEGG: dmo:Dmoj_GI13885 GI13885 gene product from transcript GI13885-RA; hypothetical protein 379153 9386247 Hden_0369 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754512.1 378809 R 582899 CDS YP_003754513.1 300021902 9386248 379469..379636 1 NC_014313.1 KEGG: pap:PSPA7_5558 Sel1; hypothetical protein 379636 9386248 Hden_0370 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754513.1 379469 D 582899 CDS YP_003754514.1 300021903 9386249 complement(379679..381481) 1 NC_014313.1 TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: pla:Plav_0223 GTP-binding protein LepA; SMART: elongation factor G domain protein; GTP-binding protein LepA 381481 9386249 Hden_0371 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein LepA YP_003754514.1 379679 R 582899 CDS YP_003754515.1 300021904 9386250 381658..382209 1 NC_014313.1 KEGG: syx:SynWH7803_1731 signal recognition particle protein; hypothetical protein 382209 9386250 Hden_0372 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754515.1 381658 D 582899 CDS YP_003754516.1 300021905 9386251 382406..383362 1 NC_014313.1 PFAM: protein of unknown function DUF125 transmembrane; rubrerythrin; KEGG: azl:AZL_013670 hypothetical protein; hypothetical protein 383362 9386251 Hden_0373 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754516.1 382406 D 582899 CDS YP_003754517.1 300021906 9386252 383487..384725 1 NC_014313.1 KEGG: bbt:BBta_2243 hypothetical protein; TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; lytic murein transglycosylase 384725 9386252 Hden_0374 Hyphomicrobium denitrificans ATCC 51888 lytic murein transglycosylase YP_003754517.1 383487 D 582899 CDS YP_003754518.1 300021907 9386253 complement(384792..386138) 1 NC_014313.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: met:M446_4539 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 386138 9386253 Hden_0375 Hyphomicrobium denitrificans ATCC 51888 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003754518.1 384792 R 582899 CDS YP_003754519.1 300021908 9386254 complement(386172..388604) 1 NC_014313.1 TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; KEGG: pla:Plav_0221 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta 388604 9386254 Hden_0376 Hyphomicrobium denitrificans ATCC 51888 phenylalanyl-tRNA synthetase subunit beta YP_003754519.1 386172 R 582899 CDS YP_003754520.1 300021909 9386255 complement(388777..389844) 1 NC_014313.1 KEGG: oca:OCAR_4439 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha 389844 9386255 Hden_0377 Hyphomicrobium denitrificans ATCC 51888 phenylalanyl-tRNA synthetase subunit alpha YP_003754520.1 388777 R 582899 CDS YP_003754521.1 300021910 9386256 complement(390004..390405) 1 NC_014313.1 KEGG: mno:Mnod_5553 ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 390405 9386256 Hden_0378 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L20 YP_003754521.1 390004 R 582899 CDS YP_003754522.1 300021911 9386257 complement(390507..390707) 1 NC_014313.1 KEGG: dsh:Dshi_0230 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; 50S ribosomal protein L35 390707 9386257 Hden_0379 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L35 YP_003754522.1 390507 R 582899 CDS YP_003754523.1 300021912 9386258 391198..391545 1 NC_014313.1 KEGG: gwc:GWCH70_2402 ABC transporter; hypothetical protein 391545 9386258 Hden_0380 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754523.1 391198 D 582899 CDS YP_003754524.1 300021913 9386259 complement(391574..391984) 1 NC_014313.1 PFAM: GtrA family protein; KEGG: sal:Sala_2862 GtrA-like protein; GtrA family protein 391984 9386259 Hden_0381 Hyphomicrobium denitrificans ATCC 51888 GtrA family protein YP_003754524.1 391574 R 582899 CDS YP_003754525.1 300021914 9386260 392241..392441 1 NC_014313.1 KEGG: clu:CLUG_04191 hypothetical protein; hypothetical protein 392441 9386260 Hden_0382 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754525.1 392241 D 582899 CDS YP_003754526.1 300021915 9386261 392550..392807 1 NC_014313.1 KEGG: ami:Amir_3335 cellulase; cellulase 392807 9386261 Hden_0383 Hyphomicrobium denitrificans ATCC 51888 cellulase YP_003754526.1 392550 D 582899 CDS YP_003754527.1 300021916 9386262 complement(392968..393342) 1 NC_014313.1 KEGG: amr:AM1_2994 cyclic nucleotide-binding protein, PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 393342 9386262 Hden_0384 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003754527.1 392968 R 582899 CDS YP_003754528.1 300021917 9386263 complement(393474..394004) 1 NC_014313.1 KEGG: xau:Xaut_1937 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: translation initiation factor 3-like; translation initiation factor IF-3 394004 9386263 Hden_0385 Hyphomicrobium denitrificans ATCC 51888 translation initiation factor IF-3 YP_003754528.1 393474 R 582899 CDS YP_003754529.1 300021918 9386264 394227..395306 1 NC_014313.1 PFAM: protein of unknown function DUF1022; KEGG: tmz:Tmz1t_3771 protein of unknown function DUF1022; hypothetical protein 395306 9386264 Hden_0386 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754529.1 394227 D 582899 CDS YP_003754530.1 300021919 9386265 complement(395348..396160) 1 NC_014313.1 KEGG: rpt:Rpal_3214 hypothetical protein; hypothetical protein 396160 9386265 Hden_0387 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754530.1 395348 R 582899 CDS YP_003754531.1 300021920 9386266 complement(396357..397568) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: mrd:Mrad2831_3159 glycosyl transferase group 1; group 1 glycosyl transferase 397568 9386266 Hden_0388 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754531.1 396357 R 582899 CDS YP_003754532.1 300021921 9386267 397604..398389 1 NC_014313.1 KEGG: nha:Nham_0078 hypothetical protein; hypothetical protein 398389 9386267 Hden_0389 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754532.1 397604 D 582899 CDS YP_003754533.1 300021922 9386268 complement(398401..399435) 1 NC_014313.1 KEGG: twh:TWT151 hypothetical protein; hypothetical protein 399435 9386268 Hden_0390 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754533.1 398401 R 582899 CDS YP_003754534.1 300021923 9386269 complement(399483..400346) 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: alv:Alvin_1682 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 400346 9386269 Hden_0391 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003754534.1 399483 R 582899 CDS YP_003754535.1 300021924 9386270 complement(400343..401494) 1 NC_014313.1 PFAM: hypothetical protein; KEGG: pla:Plav_0200 hypothetical protein; hypothetical protein 401494 9386270 Hden_0392 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754535.1 400343 R 582899 CDS YP_003754536.1 300021925 9386271 complement(401522..402226) 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: mrd:Mrad2831_3133 glutathione S-transferase domain-containing protein; glutathione S-transferase 402226 9386271 Hden_0393 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003754536.1 401522 R 582899 CDS YP_003754537.1 300021926 9386272 402367..403164 1 NC_014313.1 KEGG: oan:Oant_1339 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA; undecaprenol kinase 403164 9386272 Hden_0394 Hyphomicrobium denitrificans ATCC 51888 undecaprenol kinase YP_003754537.1 402367 D 582899 CDS YP_003754538.1 300021927 9386273 complement(403228..403692) 1 NC_014313.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: xau:Xaut_2034 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN 403692 9386273 Hden_0395 Hyphomicrobium denitrificans ATCC 51888 PTS IIA-like nitrogen-regulatory protein PtsN YP_003754538.1 403228 R 582899 CDS YP_003754539.1 300021928 9386274 complement(403788..404384) 1 NC_014313.1 KEGG: pla:Plav_0191 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA 404384 9386274 Hden_0396 Hyphomicrobium denitrificans ATCC 51888 sigma 54 modulation protein/30S ribosomal protein S30EA YP_003754539.1 403788 R 582899 CDS YP_003754540.1 300021929 9386275 complement(404604..406136) 1 NC_014313.1 KEGG: oca:OCAR_4459 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor; sigma-54 factor core-binding region; RNA polymerase, sigma-54 subunit RpoN 406136 9386275 Hden_0397 Hyphomicrobium denitrificans ATCC 51888 RNA polymerase, sigma-54 subunit RpoN YP_003754540.1 404604 R 582899 CDS YP_003754541.1 300021930 9386276 complement(406183..407049) 1 NC_014313.1 KEGG: bbt:BBta_0122 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 407049 9386276 Hden_0398 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754541.1 406183 R 582899 CDS YP_003754542.1 300021931 9386277 complement(407108..409030) 1 NC_014313.1 PFAM: OstA family protein; protein of unknown function DUF1239; KEGG: pla:Plav_0194 cell envelope biogenesis YhbN; OstA family protein 409030 9386277 Hden_0399 Hyphomicrobium denitrificans ATCC 51888 OstA family protein YP_003754542.1 407108 R 582899 CDS YP_003754543.1 300021932 9386278 complement(409170..409787) 1 NC_014313.1 KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; 3'-5' exonuclease 409787 9386278 Hden_0400 Hyphomicrobium denitrificans ATCC 51888 3'-5' exonuclease YP_003754543.1 409170 R 582899 CDS YP_003754544.1 300021933 9386279 complement(409927..411294) 1 NC_014313.1 KEGG: cli:Clim_1656 hypothetical protein; hypothetical protein 411294 9386279 Hden_0401 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754544.1 409927 R 582899 CDS YP_003754545.1 300021934 9386280 411722..412069 1 NC_014313.1 KEGG: msl:Msil_0262 hypothetical protein; hypothetical protein 412069 9386280 Hden_0402 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754545.1 411722 D 582899 CDS YP_003754546.1 300021935 9386281 complement(412164..412571) 1 NC_014313.1 PFAM: DoxX family protein; KEGG: mpo:Mpop_0499 DoxX family protein; DoxX family protein 412571 9386281 Hden_0403 Hyphomicrobium denitrificans ATCC 51888 DoxX family protein YP_003754546.1 412164 R 582899 CDS YP_003754547.1 300021936 9386282 complement(412712..413647) 1 NC_014313.1 KEGG: atc:AGR_C_3412 thermolabile glutaminase (glutaminase A); PFAM: glutaminase, core; glutaminase 413647 9386282 Hden_0404 Hyphomicrobium denitrificans ATCC 51888 glutaminase YP_003754547.1 412712 R 582899 CDS YP_003754548.1 300021937 9386283 complement(413977..416898) 1 NC_014313.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: mei:Msip34_1977 outer membrane autotransporter barrel domain protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 416898 9386283 Hden_0405 Hyphomicrobium denitrificans ATCC 51888 outer membrane autotransporter barrel domain-containing protein YP_003754548.1 413977 R 582899 CDS YP_003754549.1 300021938 9386285 417574..417855 1 NC_014313.1 KEGG: pop:POPTR_562495 hypothetical protein; hypothetical protein 417855 9386285 Hden_0406 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754549.1 417574 D 582899 CDS YP_003754550.1 300021939 9386286 complement(417923..418309) 1 NC_014313.1 KEGG: gem:GM21_3035 large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 418309 9386286 Hden_0407 Hyphomicrobium denitrificans ATCC 51888 large conductance mechanosensitive channel protein YP_003754550.1 417923 R 582899 CDS YP_003754551.1 300021940 9386287 418486..418845 1 NC_014313.1 TIGRFAM: solute symporter protein; KEGG: eba:ebA828 hypothetical protein; solute symporter protein 418845 9386287 Hden_0408 Hyphomicrobium denitrificans ATCC 51888 solute symporter protein YP_003754551.1 418486 D 582899 CDS YP_003754552.1 300021941 9386288 418855..420690 1 NC_014313.1 PFAM: Na+/solute symporter; KEGG: tro:trd_1113 sodium/solute symporter; Na+/solute symporter 420690 9386288 Hden_0409 Hyphomicrobium denitrificans ATCC 51888 Na+/solute symporter YP_003754552.1 418855 D 582899 CDS YP_003754553.1 300021942 9386289 420852..421817 1 NC_014313.1 KEGG: pla:Plav_0503 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 421817 9386289 Hden_0410 Hyphomicrobium denitrificans ATCC 51888 proline iminopeptidase YP_003754553.1 420852 D 582899 CDS YP_003754554.1 300021943 9386290 complement(421829..422347) 1 NC_014313.1 KEGG: oan:Oant_0406 hypothetical protein; hypothetical protein 422347 9386290 Hden_0411 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754554.1 421829 R 582899 CDS YP_003754555.1 300021944 9386291 422700..425318 1 NC_014313.1 KEGG: pla:Plav_0458 peptidoglycan binding domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 425318 9386291 Hden_0412 Hyphomicrobium denitrificans ATCC 51888 Sel1 domain-containing protein repeat-containing protein YP_003754555.1 422700 D 582899 CDS YP_003754556.1 300021945 9386292 425501..426424 1 NC_014313.1 PFAM: protein of unknown function DUF81; KEGG: mes:Meso_0026 hypothetical protein; hypothetical protein 426424 9386292 Hden_0413 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754556.1 425501 D 582899 CDS YP_003754557.1 300021946 9386293 426424..427218 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: pla:Plav_0456 hypothetical protein; hypothetical protein 427218 9386293 Hden_0414 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754557.1 426424 D 582899 CDS YP_003754558.1 300021947 9386294 complement(427223..427945) 1 NC_014313.1 PFAM: metallophosphoesterase; KEGG: rpt:Rpal_0876 metallophosphoesterase; metallophosphoesterase 427945 9386294 Hden_0415 Hyphomicrobium denitrificans ATCC 51888 metallophosphoesterase YP_003754558.1 427223 R 582899 CDS YP_003754559.1 300021948 9386295 complement(427911..430493) 1 NC_014313.1 KEGG: bmr:BMI_II819 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase; SMART: DEAD-like helicase ; helicase domain protein; DEAD/H associated domain-containing protein 430493 9386295 Hden_0416 Hyphomicrobium denitrificans ATCC 51888 DEAD/H associated domain-containing protein YP_003754559.1 427911 R 582899 CDS YP_003754560.1 300021949 9386296 complement(430525..431613) 1 NC_014313.1 TIGRFAM: dihydroorotate dehydrogenase; KEGG: mes:Meso_0094 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase 431613 9386296 Hden_0417 Hyphomicrobium denitrificans ATCC 51888 dihydroorotate dehydrogenase YP_003754560.1 430525 R 582899 CDS YP_003754561.1 300021950 9386297 complement(431607..431960) 1 NC_014313.1 PFAM: protein of unknown function DUF952; KEGG: rpd:RPD_0787 hypothetical protein; hypothetical protein 431960 9386297 Hden_0418 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754561.1 431607 R 582899 CDS YP_003754562.1 300021951 9386298 432122..433927 1 NC_014313.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: mea:Mex_p20010 hypothetical protein; hypothetical protein 433927 9386298 Hden_0419 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754562.1 432122 D 582899 CDS YP_003754563.1 300021952 9386299 complement(433943..435595) 1 NC_014313.1 TIGRFAM: lysyl-tRNA synthetase; KEGG: bmr:BMI_II784 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; lysyl-tRNA synthetase 435595 9386299 Hden_0420 Hyphomicrobium denitrificans ATCC 51888 lysyl-tRNA synthetase YP_003754563.1 433943 R 582899 CDS YP_003754564.1 300021953 9386300 complement(435721..436371) 1 NC_014313.1 manually curated; KEGG: smd:Smed_4300 hypothetical protein; hypothetical protein 436371 9386300 Hden_0421 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754564.1 435721 R 582899 CDS YP_003754565.1 300021954 9386301 436597..438072 1 NC_014313.1 PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rpe:RPE_0091 penicillin-insensitive murein endopeptidase; peptidase U6 penicillin-insensitive murein endopeptidase 438072 9386301 Hden_0422 Hyphomicrobium denitrificans ATCC 51888 peptidase U6 penicillin-insensitive murein endopeptidase YP_003754565.1 436597 D 582899 CDS YP_003754566.1 300021955 9386302 complement(438114..438761) 1 NC_014313.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: mno:Mnod_1140 peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 438761 9386302 Hden_0423 Hyphomicrobium denitrificans ATCC 51888 peptide methionine sulfoxide reductase YP_003754566.1 438114 R 582899 CDS YP_003754567.1 300021956 9386303 complement(438877..439374) 1 NC_014313.1 KEGG: mes:Meso_3980 hypothetical protein; hypothetical protein 439374 9386303 Hden_0424 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754567.1 438877 R 582899 CDS YP_003754568.1 300021957 9386305 complement(439795..440799) 1 NC_014313.1 KEGG: gau:GAU_2472 hypothetical protein; hypothetical protein 440799 9386305 Hden_0425 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754568.1 439795 R 582899 CDS YP_003754569.1 300021958 9386306 complement(440796..443510) 1 NC_014313.1 KEGG: nar:Saro_0764 hypothetical protein; hypothetical protein 443510 9386306 Hden_0426 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754569.1 440796 R 582899 CDS YP_003754570.1 300021959 9386307 complement(443531..444268) 1 NC_014313.1 KEGG: nar:Saro_0765 hypothetical protein; hypothetical protein 444268 9386307 Hden_0427 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754570.1 443531 R 582899 CDS YP_003754571.1 300021960 9386308 complement(444321..444854) 1 NC_014313.1 KEGG: nar:Saro_0770 hypothetical protein; hypothetical protein 444854 9386308 Hden_0428 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754571.1 444321 R 582899 CDS YP_003754572.1 300021961 9386309 complement(445252..446439) 1 NC_014313.1 PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: msl:Msil_3423 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 446439 9386309 Hden_0429 Hyphomicrobium denitrificans ATCC 51888 succinylglutamate desuccinylase/aspartoacylase YP_003754572.1 445252 R 582899 CDS YP_003754573.1 300021962 9386310 complement(446852..447199) 1 NC_014313.1 KEGG: mpo:Mpop_0997 hypothetical protein; hypothetical protein 447199 9386310 Hden_0430 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754573.1 446852 R 582899 CDS YP_003754574.1 300021963 9386311 complement(447526..448791) 1 NC_014313.1 PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type 448791 9386311 Hden_0431 Hyphomicrobium denitrificans ATCC 51888 transposase mutator type YP_003754574.1 447526 R 582899 CDS YP_003754575.1 300021964 9386312 complement(448870..449052) 1 NC_014313.1 hypothetical protein 449052 9386312 Hden_0432 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754575.1 448870 R 582899 CDS YP_003754576.1 300021965 9386313 complement(449189..449659) 1 NC_014313.1 KEGG: dgr:Dgri_GH14159 GH14159 gene product from transcript GH14159-RA; hypothetical protein 449659 9386313 Hden_0433 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754576.1 449189 R 582899 CDS YP_003754577.1 300021966 9386314 complement(449656..452904) 1 NC_014313.1 KEGG: mea:Mex_1p2655 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump 452904 9386314 Hden_0434 Hyphomicrobium denitrificans ATCC 51888 CzcA family heavy metal efflux pump YP_003754577.1 449656 R 582899 CDS YP_003754578.1 300021967 9386315 complement(452915..454216) 1 NC_014313.1 KEGG: mno:Mnod_2139 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; RND family efflux transporter MFP subunit 454216 9386315 Hden_0435 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003754578.1 452915 R 582899 CDS YP_003754579.1 300021968 9386316 455286..456917 1 NC_014313.1 KEGG: dac:Daci_5149 ankyrin; PFAM: ankyrin; SMART: ankyrin; ankyrin 456917 9386316 Hden_0436 Hyphomicrobium denitrificans ATCC 51888 ankyrin YP_003754579.1 455286 D 582899 CDS YP_003754580.1 300021969 9386317 457087..457614 1 NC_014313.1 PFAM: NGN domain protein; KEGG: aeh:Mlg_0093 transcription antitermination protein NusG; NusG antitermination factor 457614 9386317 Hden_0437 Hyphomicrobium denitrificans ATCC 51888 NusG antitermination factor YP_003754580.1 457087 D 582899 CDS YP_003754581.1 300021970 9386318 complement(457659..458969) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase; group 1 glycosyl transferase 458969 9386318 Hden_0438 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754581.1 457659 R 582899 CDS YP_003754582.1 300021971 9386319 complement(459025..459819) 1 NC_014313.1 PFAM: protein of unknown function DUF218; KEGG: rpe:RPE_3419 hypothetical protein; hypothetical protein 459819 9386319 Hden_0439 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754582.1 459025 R 582899 CDS YP_003754583.1 300021972 9386320 complement(459868..460443) 1 NC_014313.1 KEGG: rsp:RSP_7375 colanic acid biosynthesis acetyltransferase WcaF; colanic acid biosynthesis acetyltransferase WcaF 460443 9386320 Hden_0440 Hyphomicrobium denitrificans ATCC 51888 colanic acid biosynthesis acetyltransferase WcaF YP_003754583.1 459868 R 582899 CDS YP_003754584.1 300021973 9386321 complement(460440..461600) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: rba:RB2471 poly(glycerol-phosphate) alpha-glucosyltransferase; group 1 glycosyl transferase 461600 9386321 Hden_0441 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754584.1 460440 R 582899 CDS YP_003754585.1 300021974 9386322 complement(461597..462835) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: cyc:PCC7424_5790 glycosyl transferase group 1; group 1 glycosyl transferase 462835 9386322 Hden_0442 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754585.1 461597 R 582899 CDS YP_003754586.1 300021975 9386323 complement(462838..464175) 1 NC_014313.1 KEGG: sus:acid_4652 transmembrane prediction; transmembrane prediction 464175 9386323 Hden_0443 Hyphomicrobium denitrificans ATCC 51888 transmembrane prediction YP_003754586.1 462838 R 582899 CDS YP_003754587.1 300021976 9386324 complement(464214..465458) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: bmi:BMEA_B0399 glycosyl transferase group 1; group 1 glycosyl transferase 465458 9386324 Hden_0444 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754587.1 464214 R 582899 CDS YP_003754588.1 300021977 9386325 complement(465451..466599) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_14181 hypothetical protein; group 1 glycosyl transferase 466599 9386325 Hden_0445 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754588.1 465451 R 582899 CDS YP_003754589.1 300021978 9386326 complement(466587..467726) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_13801 hypothetical protein; group 1 glycosyl transferase 467726 9386326 Hden_0446 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754589.1 466587 R 582899 CDS YP_003754590.1 300021979 9386327 complement(467723..468886) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_13811 hypothetical protein; group 1 glycosyl transferase 468886 9386327 Hden_0447 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754590.1 467723 R 582899 CDS YP_003754591.1 300021980 9386328 complement(468895..469803) 1 NC_014313.1 TIGRFAM: methyltransferase FkbM family; KEGG: tmz:Tmz1t_2883 methyltransferase FkbM family; FkbM family methyltransferase 469803 9386328 Hden_0448 Hyphomicrobium denitrificans ATCC 51888 FkbM family methyltransferase YP_003754591.1 468895 R 582899 CDS YP_003754592.1 300021981 9386329 complement(469821..470690) 1 NC_014313.1 TIGRFAM: methyltransferase FkbM family; KEGG: sli:Slin_5205 methyltransferase FkbM family; FkbM family methyltransferase 470690 9386329 Hden_0449 Hyphomicrobium denitrificans ATCC 51888 FkbM family methyltransferase YP_003754592.1 469821 R 582899 CDS YP_003754593.1 300021982 9386330 complement(470707..471828) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: ote:Oter_2759 glycosyl transferase group 1; group 1 glycosyl transferase 471828 9386330 Hden_0450 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003754593.1 470707 R 582899 CDS YP_003754594.1 300021983 9386331 complement(471834..473108) 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein; KEGG: pjd:Pjdr2_1229 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 473108 9386331 Hden_0451 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein YP_003754594.1 471834 R 582899 CDS YP_003754595.1 300021984 9386332 complement(473331..474578) 1 NC_014313.1 KEGG: nhl:Nhal_1316 hypothetical protein; hypothetical protein 474578 9386332 Hden_0452 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754595.1 473331 R 582899 CDS YP_003754596.1 300021985 9386333 complement(474617..475201) 1 NC_014313.1 KEGG: eba:ebA6795 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 475201 9386333 Hden_0453 Hyphomicrobium denitrificans ATCC 51888 heat shock protein DnaJ domain-containing protein YP_003754596.1 474617 R 582899 CDS YP_003754597.1 300021986 9386334 complement(475198..477528) 1 NC_014313.1 TIGRFAM: capsular exopolysaccharide family; KEGG: eba:ebA6797 exopolysaccharide biosynthesis protein; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family 477528 9386334 Hden_0454 Hyphomicrobium denitrificans ATCC 51888 capsular exopolysaccharide family YP_003754597.1 475198 R 582899 CDS YP_003754598.1 300021987 9386336 complement(478368..479138) 1 NC_014313.1 KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein; PFAM: PHP domain protein; protein-tyrosine-phosphatase 479138 9386336 Hden_0456 Hyphomicrobium denitrificans ATCC 51888 protein-tyrosine-phosphatase YP_003754598.1 478368 R 582899 CDS YP_003754599.1 300021988 9386337 479467..479973 1 NC_014313.1 KEGG: eba:ebA6791 hypothetical protein; hypothetical protein 479973 9386337 Hden_0457 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754599.1 479467 D 582899 CDS YP_003754600.1 300021989 9386338 479999..481561 1 NC_014313.1 PFAM: O-antigen polymerase; KEGG: eba:ebA5975 binding-protein-dependent transporter protein; O-antigen polymerase 481561 9386338 Hden_0458 Hyphomicrobium denitrificans ATCC 51888 O-antigen polymerase YP_003754600.1 479999 D 582899 CDS YP_003754601.1 300021990 9386339 complement(481665..483242) 1 NC_014313.1 PFAM: sugar transferase; KEGG: rso:RS02342 glycosyl transferase transmembrane protein; sugar transferase 483242 9386339 Hden_0459 Hyphomicrobium denitrificans ATCC 51888 sugar transferase YP_003754601.1 481665 R 582899 CDS YP_003754602.1 300021991 9386340 complement(483402..483794) 1 NC_014313.1 PFAM: protein of unknown function DUF983; KEGG: bid:Bind_1611 hypothetical protein; hypothetical protein 483794 9386340 Hden_0460 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754602.1 483402 R 582899 CDS YP_003754603.1 300021992 9386341 484039..485400 1 NC_014313.1 KEGG: rsk:RSKD131_3171 hypothetical protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 485400 9386341 Hden_0461 Hyphomicrobium denitrificans ATCC 51888 GntR family transcriptional regulator YP_003754603.1 484039 D 582899 CDS YP_003754604.1 300021993 9386342 485479..486480 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: scl:sce4293 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 486480 9386342 Hden_0462 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003754604.1 485479 D 582899 CDS YP_003754605.1 300021994 9386343 486586..487398 1 NC_014313.1 KEGG: atc:AGR_C_4642 molybdate-binding periplasmic protein; TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 487398 9386343 Hden_0463 Hyphomicrobium denitrificans ATCC 51888 molybdenum ABC transporter periplasmic molybdate-binding protein YP_003754605.1 486586 D 582899 CDS YP_003754606.1 300021995 9386344 487432..488130 1 NC_014313.1 KEGG: msl:Msil_0059 molybdate ABC transporter inner membrane subunit; TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; molybdate ABC transporter inner membrane subunit 488130 9386344 Hden_0464 Hyphomicrobium denitrificans ATCC 51888 molybdate ABC transporter inner membrane subunit YP_003754606.1 487432 D 582899 CDS YP_003754607.1 300021996 9386345 488127..488849 1 NC_014313.1 KEGG: mno:Mnod_3727 molybdate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 488849 9386345 Hden_0465 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754607.1 488127 D 582899 CDS YP_003754608.1 300021997 9386346 complement(488909..489274) 1 NC_014313.1 PFAM: regulatory protein LysR; KEGG: bbt:BBta_1642 LysR family transcriptional regulator; ModE family transcriptional regulator 489274 9386346 Hden_0466 Hyphomicrobium denitrificans ATCC 51888 ModE family transcriptional regulator YP_003754608.1 488909 R 582899 CDS YP_003754609.1 300021998 9386347 complement(489519..490280) 1 NC_014313.1 PFAM: ABC transporter; KEGG: rpt:Rpal_4025 ABC-2 type transporter; ABC transporter 490280 9386347 Hden_0467 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754609.1 489519 R 582899 CDS YP_003754610.1 300021999 9386348 complement(490277..491203) 1 NC_014313.1 KEGG: nwi:Nwi_2361 ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 491203 9386348 Hden_0468 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754610.1 490277 R 582899 CDS YP_003754611.1 300022000 9386349 complement(491394..491597) 1 NC_014313.1 KEGG: rsp:RSP_0920 biopolymer transporter, ExbB; hypothetical protein 491597 9386349 Hden_0469 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754611.1 491394 R 582899 CDS YP_003754612.1 300022001 9386350 491736..492332 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: rpt:Rpal_3430 TetR family transcriptional regulator; TetR family transcriptional regulator 492332 9386350 Hden_0470 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754612.1 491736 D 582899 CDS YP_003754613.1 300022002 9386351 492412..493716 1 NC_014313.1 PFAM: NHL repeat containing protein; KEGG: mno:Mnod_3274 glucose/sorbosone dehydrogenase; NHL repeat containing protein 493716 9386351 Hden_0471 Hyphomicrobium denitrificans ATCC 51888 NHL repeat containing protein YP_003754613.1 492412 D 582899 CDS YP_003754614.1 300022003 9386352 493864..494874 1 NC_014313.1 KEGG: reu:Reut_B4897 NAD-dependent epimerase/dehydratase; TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 494874 9386352 Hden_0472 Hyphomicrobium denitrificans ATCC 51888 hopanoid-associated sugar epimerase YP_003754614.1 493864 D 582899 CDS YP_003754615.1 300022004 9386353 494871..496037 1 NC_014313.1 KEGG: bur:Bcep18194_B0107 glycosyl transferase family protein; TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; hopene-associated glycosyltransferase HpnB 496037 9386353 Hden_0473 Hyphomicrobium denitrificans ATCC 51888 hopene-associated glycosyltransferase HpnB YP_003754615.1 494871 D 582899 CDS YP_003754616.1 300022005 9386354 496034..496918 1 NC_014313.1 KEGG: oca:OCAR_6674 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase HpnC 496918 9386354 Hden_0474 Hyphomicrobium denitrificans ATCC 51888 squalene synthase HpnC YP_003754616.1 496034 D 582899 CDS YP_003754617.1 300022006 9386355 496915..497757 1 NC_014313.1 TIGRFAM: squalene synthase HpnD; KEGG: mno:Mnod_7144 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD 497757 9386355 Hden_0475 Hyphomicrobium denitrificans ATCC 51888 squalene synthase HpnD YP_003754617.1 496915 D 582899 CDS YP_003754618.1 300022007 9386356 497757..499010 1 NC_014313.1 KEGG: met:M446_6348 squalene-associated FAD-dependent desaturase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; squalene-associated FAD-dependent desaturase 499010 9386356 Hden_0476 Hyphomicrobium denitrificans ATCC 51888 squalene-associated FAD-dependent desaturase YP_003754618.1 497757 D 582899 CDS YP_003754619.1 300022008 9386357 499040..501037 1 NC_014313.1 TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; KEGG: mno:Mnod_7146 squalene-hopene cyclase; PFAM: prenyltransferase/squalene oxidase; squalene/oxidosqualene cyclase 501037 9386357 Hden_0477 Hyphomicrobium denitrificans ATCC 51888 squalene/oxidosqualene cyclase YP_003754619.1 499040 D 582899 CDS YP_003754620.1 300022009 9386358 501041..501724 1 NC_014313.1 KEGG: bid:Bind_3157 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; hopanoid-associated phosphorylase 501724 9386358 Hden_0478 Hyphomicrobium denitrificans ATCC 51888 hopanoid-associated phosphorylase YP_003754620.1 501041 D 582899 CDS YP_003754621.1 300022010 9386359 complement(501668..502816) 1 NC_014313.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: msl:Msil_3245 hopanoid biosynthesis associated radical SAM protein HpnH; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnH 502816 9386359 Hden_0479 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated radical SAM protein HpnH YP_003754621.1 501668 R 582899 CDS YP_003754622.1 300022011 9386360 complement(502858..503787) 1 NC_014313.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: zmn:Za10_0417 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 503787 9386360 Hden_0480 Hyphomicrobium denitrificans ATCC 51888 hydroxymethylbutenyl pyrophosphate reductase YP_003754622.1 502858 R 582899 CDS YP_003754623.1 300022012 9386361 504118..506745 1 NC_014313.1 TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: msl:Msil_3246 hopanoid biosynthesis associated RND transporter like protein HpnN; hopanoid biosynthesis associated RND transporter like protein HpnN 506745 9386361 Hden_0481 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated RND transporter like protein HpnN YP_003754623.1 504118 D 582899 CDS YP_003754624.1 300022013 9386362 complement(506762..508180) 1 NC_014313.1 TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: radical SAM protein; KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ 508180 9386362 Hden_0482 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated radical SAM protein HpnJ YP_003754624.1 506762 R 582899 CDS YP_003754625.1 300022014 9386363 complement(508192..509325) 1 NC_014313.1 TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; KEGG: hopanoid biosynthesis associated glycosyl transferase protein HpnI; hopanoid biosynthesis associated glycosyl transferase protein HpnI 509325 9386363 Hden_0483 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated glycosyl transferase protein HpnI YP_003754625.1 508192 R 582899 CDS YP_003754626.1 300022015 9386364 509460..510425 1 NC_014313.1 PFAM: VacJ family lipoprotein; KEGG: hne:HNE_2105 lipoprotein VacJ; VacJ family lipoprotein 510425 9386364 Hden_0484 Hyphomicrobium denitrificans ATCC 51888 VacJ family lipoprotein YP_003754626.1 509460 D 582899 CDS YP_003754627.1 300022016 9386365 complement(510634..511263) 1 NC_014313.1 KEGG: rru:Rru_A0056 toluene tolerance; TIGRFAM: hopanoid biosynthesis associated membrane protein HpnM; PFAM: toluene tolerance family protein; hopanoid biosynthesis associated membrane protein HpnM 511263 9386365 Hden_0485 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated membrane protein HpnM YP_003754627.1 510634 R 582899 CDS YP_003754628.1 300022017 9386366 511502..513448 1 NC_014313.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase; KEGG: bra:BRADO2161 1-deoxy-D-xylulose-5-phosphate synthase; SMART: transketolase central region; deoxyxylulose-5-phosphate synthase 513448 9386366 Hden_0486 Hyphomicrobium denitrificans ATCC 51888 deoxyxylulose-5-phosphate synthase YP_003754628.1 511502 D 582899 CDS YP_003754629.1 300022018 9386367 complement(513445..514479) 1 NC_014313.1 KEGG: mag:amb3101 hypothetical protein; hypothetical protein 514479 9386367 Hden_0487 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754629.1 513445 R 582899 CDS YP_003754630.1 300022019 9386368 complement(514472..515677) 1 NC_014313.1 KEGG: reh:H16_B2171 cell wall biosynthesis glycosyltransferase; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI 515677 9386368 Hden_0488 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated glycosyl transferase protein HpnI YP_003754630.1 514472 R 582899 CDS YP_003754631.1 300022020 9386369 complement(515778..516641) 1 NC_014313.1 KEGG: mag:amb3100 hypothetical protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; hopanoid biosynthesis associated protein HpnK 516641 9386369 Hden_0489 Hyphomicrobium denitrificans ATCC 51888 hopanoid biosynthesis associated protein HpnK YP_003754631.1 515778 R 582899 CDS YP_003754632.1 300022021 9386370 complement(516722..516982) 1 NC_014313.1 KEGG: bja:bsr4462 hypothetical protein; hypothetical protein 516982 9386370 Hden_0490 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754632.1 516722 R 582899 CDS YP_003754633.1 300022022 9386371 complement(517147..517518) 1 NC_014313.1 KEGG: cre:CHLREDRAFT_190948 hypothetical protein; hypothetical protein 517518 9386371 Hden_0491 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754633.1 517147 R 582899 CDS YP_003754634.1 300022023 9386372 complement(517655..518545) 1 NC_014313.1 KEGG: rru:Rru_A1617 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1289; hypothetical protein 518545 9386372 Hden_0492 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754634.1 517655 R 582899 CDS YP_003754635.1 300022024 9386373 complement(518604..519347) 1 NC_014313.1 KEGG: bch:Bcen2424_5288 hypothetical protein; hypothetical protein 519347 9386373 Hden_0493 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754635.1 518604 R 582899 CDS YP_003754636.1 300022025 9386374 complement(519367..519576) 1 NC_014313.1 KEGG: rpc:RPC_2504 hypothetical protein; hypothetical protein 519576 9386374 Hden_0494 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754636.1 519367 R 582899 CDS YP_003754637.1 300022026 9386375 519773..520333 1 NC_014313.1 KEGG: rpc:RPC_2505 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SMART: phosphoglycerate mutase; phosphoglycerate mutase 520333 9386375 Hden_0495 Hyphomicrobium denitrificans ATCC 51888 phosphoglycerate mutase YP_003754637.1 519773 D 582899 CDS YP_003754638.1 300022027 9386376 complement(520349..522319) 1 NC_014313.1 PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; KEGG: bja:bll2448 cellulose synthase catalytic subunit; family 2 glycosyl transferase 522319 9386376 Hden_0496 Hyphomicrobium denitrificans ATCC 51888 family 2 glycosyl transferase YP_003754638.1 520349 R 582899 CDS YP_003754639.1 300022028 9386377 complement(522334..523779) 1 NC_014313.1 KEGG: bja:bll2449 hypothetical protein; hypothetical protein 523779 9386377 Hden_0497 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754639.1 522334 R 582899 CDS YP_003754640.1 300022029 9386378 complement(524015..524257) 1 NC_014313.1 KEGG: pol:Bpro_5177 hypothetical protein; hypothetical protein 524257 9386378 Hden_0498 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754640.1 524015 R 582899 CDS YP_003754641.1 300022030 9386379 524455..525657 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: rpb:RPB_2415 major facilitator transporter; major facilitator superfamily protein 525657 9386379 Hden_0499 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003754641.1 524455 D 582899 CDS YP_003754642.1 300022031 9386380 complement(525654..527444) 1 NC_014313.1 manually curated; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: nwi:Nwi_1064 ABC transporter transmembrane region; SMART: ATPase AAA; ABC transporter 527444 9386380 Hden_0500 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754642.1 525654 R 582899 CDS YP_003754643.1 300022032 9386381 complement(527736..528638) 1 NC_014313.1 KEGG: slt:Slit_2909 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 528638 9386381 Hden_0501 Hyphomicrobium denitrificans ATCC 51888 glucose-1-phosphate thymidylyltransferase YP_003754643.1 527736 R 582899 CDS YP_003754644.1 300022033 9386382 complement(528635..529726) 1 NC_014313.1 KEGG: mno:Mnod_4335 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase 529726 9386382 Hden_0502 Hyphomicrobium denitrificans ATCC 51888 dTDP-glucose 4,6-dehydratase YP_003754644.1 528635 R 582899 CDS YP_003754645.1 300022034 9386383 complement(529760..530311) 1 NC_014313.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 530311 9386383 Hden_0503 Hyphomicrobium denitrificans ATCC 51888 dTDP-4-dehydrorhamnose 3,5-epimerase YP_003754645.1 529760 R 582899 CDS YP_003754646.1 300022035 9386384 530477..532291 1 NC_014313.1 PFAM: protein of unknown function UPF0118; KEGG: xau:Xaut_1431 hypothetical protein; hypothetical protein 532291 9386384 Hden_0504 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754646.1 530477 D 582899 CDS YP_003754647.1 300022036 9386385 532375..532656 1 NC_014313.1 KEGG: bra:BRADO1053 hypothetical protein; hypothetical protein 532656 9386385 Hden_0505 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754647.1 532375 D 582899 CDS YP_003754648.1 300022037 9386386 532672..533190 1 NC_014313.1 KEGG: hne:HNE_2267 hypothetical protein; hypothetical protein 533190 9386386 Hden_0506 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754648.1 532672 D 582899 CDS YP_003754649.1 300022038 9386387 533203..533592 1 NC_014313.1 KEGG: pti:PHATR_46635 hypothetical protein; hypothetical protein 533592 9386387 Hden_0507 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754649.1 533203 D 582899 CDS YP_003754650.1 300022039 9386388 complement(533630..533959) 1 NC_014313.1 PFAM: cupin; KEGG: nha:Nham_1257 hypothetical protein; cupin 533959 9386388 Hden_0508 Hyphomicrobium denitrificans ATCC 51888 cupin YP_003754650.1 533630 R 582899 CDS YP_003754651.1 300022040 9386389 complement(533983..534342) 1 NC_014313.1 KEGG: bja:bll4718 hypothetical protein; hypothetical protein 534342 9386389 Hden_0509 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754651.1 533983 R 582899 CDS YP_003754652.1 300022041 9386390 complement(534511..535284) 1 NC_014313.1 PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mrd:Mrad2831_6157 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD-binding domain-containing protein 535284 9386390 Hden_0510 Hyphomicrobium denitrificans ATCC 51888 oxidoreductase FAD-binding domain-containing protein YP_003754652.1 534511 R 582899 CDS YP_003754653.1 300022042 9386391 complement(535435..536664) 1 NC_014313.1 KEGG: oca:OCAR_7340 hypothetical protein; hypothetical protein 536664 9386391 Hden_0511 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754653.1 535435 R 582899 CDS YP_003754654.1 300022043 9386392 537170..538063 1 NC_014313.1 PFAM: glutamine amidotransferase class-II; KEGG: atc:AGR_L_1268 hypothetical protein; glutamine amidotransferase class-II 538063 9386392 Hden_0512 Hyphomicrobium denitrificans ATCC 51888 glutamine amidotransferase class-II YP_003754654.1 537170 D 582899 CDS YP_003754655.1 300022044 9386393 538086..538772 1 NC_014313.1 PFAM: glutamate synthase subunit alpha domain protein; KEGG: ret:RHE_PE00420 formyl-methanofuran dehydrogenase domain-containing protein; glutamate synthase subunit alpha domain-containing protein 538772 9386393 Hden_0513 Hyphomicrobium denitrificans ATCC 51888 glutamate synthase subunit alpha domain-containing protein YP_003754655.1 538086 D 582899 CDS YP_003754656.1 300022045 9386394 538772..540112 1 NC_014313.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: rlg:Rleg_6577 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 540112 9386394 Hden_0514 Hyphomicrobium denitrificans ATCC 51888 ferredoxin-dependent glutamate synthase YP_003754656.1 538772 D 582899 CDS YP_003754657.1 300022046 9386395 540165..541499 1 NC_014313.1 KEGG: mlo:mll7307 glutamine synthetase III; TIGRFAM: glutamine synthetaseII; PFAM: glutamine synthetase; glutamine synthetaseII 541499 9386395 Hden_0515 Hyphomicrobium denitrificans ATCC 51888 glutamine synthetaseII YP_003754657.1 540165 D 582899 CDS YP_003754658.1 300022047 9386396 541637..542356 1 NC_014313.1 PFAM: glutamine amidotransferase class-I; KEGG: rpc:RPC_0879 glutamine amidotransferase class-I; glutamine amidotransferase class-I 542356 9386396 Hden_0516 Hyphomicrobium denitrificans ATCC 51888 glutamine amidotransferase class-I YP_003754658.1 541637 D 582899 CDS YP_003754659.1 300022048 9386397 542777..545470 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bja:bll6183 hypothetical protein; TonB-dependent receptor 545470 9386397 Hden_0517 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003754659.1 542777 D 582899 CDS YP_003754660.1 300022049 9386398 545663..546760 1 NC_014313.1 PFAM: glycoside hydrolase; KEGG: bid:Bind_0865 glycoside hydrolase family 3 protein; glycoside hydrolase 546760 9386398 Hden_0518 Hyphomicrobium denitrificans ATCC 51888 glycoside hydrolase YP_003754660.1 545663 D 582899 CDS YP_003754661.1 300022050 9386399 546935..547678 1 NC_014313.1 PFAM: protein of unknown function DUF2470; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mes:Meso_2207 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; hypothetical protein 547678 9386399 Hden_0519 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754661.1 546935 D 582899 CDS YP_003754662.1 300022051 9386400 complement(547578..548393) 1 NC_014313.1 KEGG: rpc:RPC_4886 HhH-GPD; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; HhH-GPD family protein 548393 9386400 Hden_0520 Hyphomicrobium denitrificans ATCC 51888 HhH-GPD family protein YP_003754662.1 547578 R 582899 CDS YP_003754663.1 300022052 9386401 complement(548453..548899) 1 NC_014313.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: ara:Arad_1327 methionine sulfoxide reductase B; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 548899 9386401 Hden_0521 Hyphomicrobium denitrificans ATCC 51888 methionine-R-sulfoxide reductase YP_003754663.1 548453 R 582899 CDS YP_003754664.1 300022053 9386402 complement(549044..550177) 1 NC_014313.1 KEGG: yli:YALI0B22110g YALI0B22110p; hypothetical protein 550177 9386402 Hden_0522 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754664.1 549044 R 582899 CDS YP_003754665.1 300022054 9386403 complement(550320..550529) 1 NC_014313.1 KEGG: rfr:Rfer_1604 hypothetical protein; hypothetical protein 550529 9386403 Hden_0523 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754665.1 550320 R 582899 CDS YP_003754666.1 300022055 9386404 complement(550532..551122) 1 NC_014313.1 KEGG: mms:mma_3236 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 551122 9386404 Hden_0524 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003754666.1 550532 R 582899 CDS YP_003754667.1 300022056 9386405 551292..552272 1 NC_014313.1 PFAM: catalase related subgroup; KEGG: bur:Bcep18194_C7513 catalase-like; catalase related subgroup 552272 9386405 Hden_0525 Hyphomicrobium denitrificans ATCC 51888 catalase related subgroup YP_003754667.1 551292 D 582899 CDS YP_003754668.1 300022057 9386406 552588..553895 1 NC_014313.1 PFAM: general substrate transporter; KEGG: har:HEAR3004 MFS family transporter; general substrate transporter 553895 9386406 Hden_0526 Hyphomicrobium denitrificans ATCC 51888 general substrate transporter YP_003754668.1 552588 D 582899 CDS YP_003754669.1 300022058 9386407 554656..555816 1 NC_014313.1 PFAM: Soluble ligand binding domain; KEGG: nhl:Nhal_2430 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain-containing protein 555816 9386407 Hden_0527 Hyphomicrobium denitrificans ATCC 51888 Soluble ligand binding domain-containing protein YP_003754669.1 554656 D 582899 CDS YP_003754670.1 300022059 9386408 555863..556021 1 NC_014313.1 KEGG: dmo:Dmoj_GI13511 GI13511 gene product from transcript GI13511-RA; hypothetical protein 556021 9386408 Hden_0528 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754670.1 555863 D 582899 CDS YP_003754671.1 300022060 9386409 complement(556033..556965) 1 NC_014313.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_4699 LysR family transcriptional regulator; LysR family transcriptional regulator 556965 9386409 Hden_0529 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754671.1 556033 R 582899 CDS YP_003754672.1 300022061 9386410 557636..558850 1 NC_014313.1 PFAM: protein of unknown function DUF2302; KEGG: cli:Clim_2385 OmpA/MotB domain protein; hypothetical protein 558850 9386410 Hden_0530 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754672.1 557636 D 582899 CDS YP_003754673.1 300022062 9386411 complement(558918..560270) 1 NC_014313.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sme:SMa0228 glutamate dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 560270 9386411 Hden_0531 Hyphomicrobium denitrificans ATCC 51888 Glu/Leu/Phe/Val dehydrogenase YP_003754673.1 558918 R 582899 CDS YP_003754674.1 300022063 9386412 560844..562118 1 NC_014313.1 KEGG: azc:AZC_1368 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic substrate-binding protein 562118 9386412 Hden_0532 Hyphomicrobium denitrificans ATCC 51888 ABC transporter periplasmic substrate-binding protein YP_003754674.1 560844 D 582899 CDS YP_003754675.1 300022064 9386413 complement(562175..562951) 1 NC_014313.1 KEGG: azc:AZC_1369 transcriptional regulatory protein; PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator; GntR family transcriptional regulator 562951 9386413 Hden_0533 Hyphomicrobium denitrificans ATCC 51888 GntR family transcriptional regulator YP_003754675.1 562175 R 582899 CDS YP_003754676.1 300022065 9386414 complement(563180..563323) 1 NC_014313.1 hypothetical protein 563323 9386414 Hden_0534 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754676.1 563180 R 582899 CDS YP_003754677.1 300022066 9386415 563451..565640 1 NC_014313.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: bph:Bphy_5960 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 565640 9386415 Hden_0535 Hyphomicrobium denitrificans ATCC 51888 NADH:flavin oxidoreductase/NADH oxidase YP_003754677.1 563451 D 582899 CDS YP_003754678.1 300022067 9386416 565773..568970 1 NC_014313.1 PFAM: electron transfer flavoprotein alpha/beta-subunit ; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bph:Bphy_5959 hypothetical protein; electron transfer flavoprotein alpha/beta-subunit 568970 9386416 Hden_0536 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein alpha/beta-subunit YP_003754678.1 565773 D 582899 CDS YP_003754679.1 300022068 9386417 568973..569938 1 NC_014313.1 KEGG: bph:Bphy_5956 electron transfer flavoprotein alpha subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 569938 9386417 Hden_0537 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein alpha/beta-subunit YP_003754679.1 568973 D 582899 CDS YP_003754680.1 300022069 9386418 569998..571773 1 NC_014313.1 KEGG: azc:AZC_1370 amino acid transporter permease protein; amino acid transporter permease 571773 9386418 Hden_0538 Hyphomicrobium denitrificans ATCC 51888 amino acid transporter permease YP_003754680.1 569998 D 582899 CDS YP_003754681.1 300022070 9386419 571951..573072 1 NC_014313.1 PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: msl:Msil_3605 glycine cleavage T protein (aminomethyl transferase); glycine cleavage system protein T 573072 9386419 Hden_0539 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein T YP_003754681.1 571951 D 582899 CDS YP_003754682.1 300022071 9386420 573515..575794 1 NC_014313.1 KEGG: rhi:NGR_c23520 hemin receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent heme/hemoglobin receptor family protein 575794 9386420 Hden_0540 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent heme/hemoglobin receptor family protein YP_003754682.1 573515 D 582899 CDS YP_003754683.1 300022072 9386421 575921..576265 1 NC_014313.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bph:Bphy_6540 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 576265 9386421 Hden_0541 Hyphomicrobium denitrificans ATCC 51888 antibiotic biosynthesis monooxygenase YP_003754683.1 575921 D 582899 CDS YP_003754684.1 300022073 9386422 576304..577428 1 NC_014313.1 TIGRFAM: TonB family protein; KEGG: sme:SMc01515 hypothetical protein; TonB family protein 577428 9386422 Hden_0542 Hyphomicrobium denitrificans ATCC 51888 TonB family protein YP_003754684.1 576304 D 582899 CDS YP_003754685.1 300022074 9386423 complement(577403..577546) 1 NC_014313.1 hypothetical protein 577546 9386423 Hden_0543 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754685.1 577403 R 582899 CDS YP_003754686.1 300022075 9386424 complement(577740..579428) 1 NC_014313.1 KEGG: app:CAP2UW1_2797 hypothetical protein; hypothetical protein 579428 9386424 Hden_0544 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754686.1 577740 R 582899 CDS YP_003754687.1 300022076 9386425 complement(579692..580000) 1 NC_014313.1 KEGG: ssl:SS1G_12938 hypothetical protein; hypothetical protein 580000 9386425 Hden_0545 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754687.1 579692 R 582899 CDS YP_003754688.1 300022077 9386426 complement(580140..581330) 1 NC_014313.1 PFAM: NnrS family protein; KEGG: oca:OCAR_5023 NnrS family protein; NnrS family protein 581330 9386426 Hden_0546 Hyphomicrobium denitrificans ATCC 51888 NnrS family protein YP_003754688.1 580140 R 582899 CDS YP_003754689.1 300022078 9386427 complement(581405..582028) 1 NC_014313.1 KEGG: oca:OCAR_5528 hypothetical protein; hypothetical protein 582028 9386427 Hden_0547 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754689.1 581405 R 582899 CDS YP_003754690.1 300022079 9386428 complement(582138..582869) 1 NC_014313.1 KEGG: sro:Sros_9004 dihydroorotate oxidase; manually curated; PFAM: dihydroorotate oxidase; dihydroorotate oxidase 582869 9386428 Hden_0548 Hyphomicrobium denitrificans ATCC 51888 dihydroorotate oxidase YP_003754690.1 582138 R 582899 CDS YP_003754691.1 300022080 9386429 complement(582866..583933) 1 NC_014313.1 KEGG: hha:Hhal_0570 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine transaminase 583933 9386429 Hden_0549 Hyphomicrobium denitrificans ATCC 51888 phosphoserine transaminase YP_003754691.1 582866 R 582899 CDS YP_003754692.1 300022081 9386430 complement(583945..584451) 1 NC_014313.1 KEGG: psa:PST_2067 hypothetical protein; hypothetical protein 584451 9386430 Hden_0550 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754692.1 583945 R 582899 CDS YP_003754693.1 300022082 9386431 complement(584503..585654) 1 NC_014313.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM protein; KEGG: tmz:Tmz1t_2836 coenzyme PQQ biosynthesis protein E; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E 585654 9386431 Hden_0551 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein E YP_003754693.1 584503 R 582899 CDS YP_003754694.1 300022083 9386432 complement(585623..585910) 1 NC_014313.1 PFAM: coenzyme PQQ synthesis D; KEGG: psa:PST_2069 pyrroloquinoline quinone biosynthesis protein D; coenzyme PQQ synthesis D 585910 9386432 Hden_0552 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ synthesis D YP_003754694.1 585623 R 582899 CDS YP_003754695.1 300022084 9386433 complement(585973..586080) 1 NC_014313.1 KEGG: psa:PST_2070 hypothetical protein; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A 586080 9386433 Hden_0553 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein A YP_003754695.1 585973 R 582899 CDS YP_003754696.1 300022085 9386434 complement(586320..587594) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: nha:Nham_1503 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase 587594 9386434 Hden_0554 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003754696.1 586320 R 582899 CDS YP_003754697.1 300022086 9386435 complement(587602..588798) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: rpc:RPC_2109 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase 588798 9386435 Hden_0555 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003754697.1 587602 R 582899 CDS YP_003754698.1 300022087 9386436 complement(588810..589874) 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002576 probable alcohol dehydrogenase protein; alcohol dehydrogenase zinc-binding domain-containing protein 589874 9386436 Hden_0556 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003754698.1 588810 R 582899 CDS YP_003754699.1 300022088 9386437 complement(589918..591201) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: rpe:RPE_2020 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase 591201 9386437 Hden_0557 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003754699.1 589918 R 582899 CDS YP_003754700.1 300022089 9386438 complement(591213..592436) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: rpb:RPB_3355 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase 592436 9386438 Hden_0558 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003754700.1 591213 R 582899 CDS YP_003754701.1 300022090 9386439 complement(592438..592908) 1 NC_014313.1 PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ 592908 9386439 Hden_0559 Hyphomicrobium denitrificans ATCC 51888 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ YP_003754701.1 592438 R 582899 CDS YP_003754702.1 300022091 9386440 complement(592921..593202) 1 NC_014313.1 PFAM: phosphopantetheine-binding; KEGG: xau:Xaut_1263 acyl carrier protein; phosphopantetheine-binding protein 593202 9386440 Hden_0560 Hyphomicrobium denitrificans ATCC 51888 phosphopantetheine-binding protein YP_003754702.1 592921 R 582899 CDS YP_003754703.1 300022092 9386441 593411..594619 1 NC_014313.1 KEGG: hoh:Hoch_5030 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: MaoC domain protein dehydratase; short-chain dehydrogenase/reductase SDR; MaoC domain-containing protein dehydratase 594619 9386441 Hden_0561 Hyphomicrobium denitrificans ATCC 51888 MaoC domain-containing protein dehydratase YP_003754703.1 593411 D 582899 CDS YP_003754704.1 300022093 9386442 594633..596831 1 NC_014313.1 TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: sus:acid_7156 FkbH like protein; FkbH like protein 596831 9386442 Hden_0562 Hyphomicrobium denitrificans ATCC 51888 FkbH like protein YP_003754704.1 594633 D 582899 CDS YP_003754705.1 300022094 9386443 596833..597084 1 NC_014313.1 KEGG: gme:Gmet_2339 acyl carrier protein; hypothetical protein 597084 9386443 Hden_0563 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754705.1 596833 D 582899 CDS YP_003754706.1 300022095 9386444 complement(597101..597673) 1 NC_014313.1 manually curated; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: mes:Meso_4292 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 597673 9386444 Hden_0564 Hyphomicrobium denitrificans ATCC 51888 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_003754706.1 597101 R 582899 CDS YP_003754707.1 300022096 9386445 complement(597670..599169) 1 NC_014313.1 KEGG: mes:Meso_4293 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; UbiD family decarboxylase 599169 9386445 Hden_0565 Hyphomicrobium denitrificans ATCC 51888 UbiD family decarboxylase YP_003754707.1 597670 R 582899 CDS YP_003754708.1 300022097 9386446 599302..599850 1 NC_014313.1 KEGG: mes:Meso_4295 lipid carrier protein-like; lipid carrier protein-like protein 599850 9386446 Hden_0566 Hyphomicrobium denitrificans ATCC 51888 lipid carrier protein-like protein YP_003754708.1 599302 D 582899 CDS YP_003754709.1 300022098 9386447 599847..600848 1 NC_014313.1 PFAM: peptidase U32; KEGG: mes:Meso_4296 peptidase U32; peptidase U32 600848 9386447 Hden_0567 Hyphomicrobium denitrificans ATCC 51888 peptidase U32 YP_003754709.1 599847 D 582899 CDS YP_003754710.1 300022099 9386448 600854..601753 1 NC_014313.1 PFAM: peptidase U32; KEGG: mes:Meso_4297 peptidase U32; peptidase U32 601753 9386448 Hden_0568 Hyphomicrobium denitrificans ATCC 51888 peptidase U32 YP_003754710.1 600854 D 582899 CDS YP_003754711.1 300022100 9386449 601750..603012 1 NC_014313.1 PFAM: cytochrome P450; KEGG: bmr:BMI_II385 heme-thiolate monooxygenase; cytochrome P450 603012 9386449 Hden_0569 Hyphomicrobium denitrificans ATCC 51888 cytochrome P450 YP_003754711.1 601750 D 582899 CDS YP_003754712.1 300022101 9386450 603157..603855 1 NC_014313.1 KEGG: azl:AZL_023730 transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 603855 9386450 Hden_0570 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003754712.1 603157 D 582899 CDS YP_003754713.1 300022102 9386451 603881..604426 1 NC_014313.1 PFAM: protein of unknown function DUF2478; KEGG: rsp:RSP_6153 hypothetical protein; hypothetical protein 604426 9386451 Hden_0571 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754713.1 603881 D 582899 CDS YP_003754714.1 300022103 9386452 complement(604460..604834) 1 NC_014313.1 KEGG: oca:OCAR_5039 hypothetical protein; hypothetical protein 604834 9386452 Hden_0572 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754714.1 604460 R 582899 CDS YP_003754715.1 300022104 9386453 complement(604991..606415) 1 NC_014313.1 KEGG: mes:Meso_4288 hypothetical protein; hypothetical protein 606415 9386453 Hden_0573 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754715.1 604991 R 582899 CDS YP_003754716.1 300022105 9386454 complement(606517..606870) 1 NC_014313.1 KEGG: mes:Meso_4286 hypothetical protein; hypothetical protein 606870 9386454 Hden_0574 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754716.1 606517 R 582899 CDS YP_003754717.1 300022106 9386455 complement(606963..607508) 1 NC_014313.1 PFAM: Ferrous iron transporter; KEGG: mes:Meso_4285 membrane antigen; Ferrous iron transporter 607508 9386455 Hden_0575 Hyphomicrobium denitrificans ATCC 51888 Ferrous iron transporter YP_003754717.1 606963 R 582899 CDS YP_003754718.1 300022107 9386456 complement(607660..609012) 1 NC_014313.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; KEGG: rhi:NGR_c09890 HemN coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 609012 9386456 Hden_0576 Hyphomicrobium denitrificans ATCC 51888 oxygen-independent coproporphyrinogen III oxidase YP_003754718.1 607660 R 582899 CDS YP_003754719.1 300022108 9386457 complement(609192..609329) 1 NC_014313.1 hypothetical protein 609329 9386457 Hden_0577 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754719.1 609192 R 582899 CDS YP_003754720.1 300022109 9386458 complement(609384..609542) 1 NC_014313.1 KEGG: atc:AGR_L_947 hypothetical protein; hypothetical protein 609542 9386458 Hden_0578 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754720.1 609384 R 582899 CDS YP_003754721.1 300022110 9386459 complement(609539..609841) 1 NC_014313.1 KEGG: mag:amb2940 hypothetical protein; hypothetical protein 609841 9386459 Hden_0579 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754721.1 609539 R 582899 CDS YP_003754722.1 300022111 9386460 complement(609844..610440) 1 NC_014313.1 PFAM: cytochrome C oxidase subunit III; KEGG: mag:amb2941 heme/copper-type cytochrome/quinol oxidase subunit 3; cytochrome C oxidase subunit III 610440 9386460 Hden_0580 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase subunit III YP_003754722.1 609844 R 582899 CDS YP_003754723.1 300022112 9386461 610609..611061 1 NC_014313.1 KEGG: oan:Oant_4386 cytochrome C class I; cytochrome C class I 611061 9386461 Hden_0581 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003754723.1 610609 D 582899 CDS YP_003754724.1 300022113 9386462 611075..612424 1 NC_014313.1 KEGG: azl:AZL_c02070 nitric-oxide reductase, cytochrome b-containing subunit I; PFAM: cytochrome C oxidase subunit I; nitric-oxide reductase 612424 9386462 Hden_0582 Hyphomicrobium denitrificans ATCC 51888 nitric-oxide reductase YP_003754724.1 611075 D 582899 CDS YP_003754725.1 300022114 9386463 612449..613258 1 NC_014313.1 PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: azl:AZL_c02060 nitric-oxide reductase NorQ protein; ATPase AAA 613258 9386463 Hden_0583 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003754725.1 612449 D 582899 CDS YP_003754726.1 300022115 9386464 613265..615172 1 NC_014313.1 KEGG: azl:AZL_c02050 nitric-oxide reductase NorD protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A 615172 9386464 Hden_0584 Hyphomicrobium denitrificans ATCC 51888 von Willebrand factor A YP_003754726.1 613265 D 582899 CDS YP_003754727.1 300022116 9386465 615302..615754 1 NC_014313.1 KEGG: nha:Nham_1934 hypothetical protein; hypothetical protein 615754 9386465 Hden_0585 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754727.1 615302 D 582899 CDS YP_003754728.1 300022117 9386466 complement(615813..618176) 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azl:AZL_a08620 iron complex outermembrane recepter protein; TonB-dependent receptor 618176 9386466 Hden_0586 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003754728.1 615813 R 582899 CDS YP_003754729.1 300022118 9386467 complement(618277..618690) 1 NC_014313.1 KEGG: rba:RB13053 signal peptide; hypothetical protein 618690 9386467 Hden_0587 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754729.1 618277 R 582899 CDS YP_003754730.1 300022119 9386468 complement(618929..620002) 1 NC_014313.1 KEGG: atc:AGR_C_1196 hypothetical protein; hypothetical protein 620002 9386468 Hden_0588 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754730.1 618929 R 582899 CDS YP_003754731.1 300022120 9386469 620294..620476 1 NC_014313.1 KEGG: plu:plu3942 cystathionine beta-lyase; hypothetical protein 620476 9386469 Hden_0589 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754731.1 620294 D 582899 CDS YP_003754732.1 300022121 9386470 620505..621692 1 NC_014313.1 PFAM: NnrS family protein; KEGG: mes:Meso_4289 NnrS; NnrS family protein 621692 9386470 Hden_0590 Hyphomicrobium denitrificans ATCC 51888 NnrS family protein YP_003754732.1 620505 D 582899 CDS YP_003754733.1 300022122 9386471 complement(621751..623211) 1 NC_014313.1 TIGRFAM: nitrite reductase, copper-containing; KEGG: oca:OCAR_7249 copper-containing nitrite reductase; PFAM: multicopper oxidase type 3; nitrite reductase, copper-containing protein 623211 9386471 Hden_0591 Hyphomicrobium denitrificans ATCC 51888 nitrite reductase, copper-containing protein YP_003754733.1 621751 R 582899 CDS YP_003754734.1 300022123 9386472 complement(623555..624010) 1 NC_014313.1 PFAM: Host attachment protein; KEGG: rlt:Rleg2_0970 hypothetical protein; Host attachment protein 624010 9386472 Hden_0592 Hyphomicrobium denitrificans ATCC 51888 Host attachment protein YP_003754734.1 623555 R 582899 CDS YP_003754735.1 300022124 9386473 624206..626098 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rpd:RPD_3277 ATP-binding region, ATPase-like; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase 626098 9386473 Hden_0593 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor hybrid histidine kinase YP_003754735.1 624206 D 582899 CDS YP_003754736.1 300022125 9386474 complement(626150..626878) 1 NC_014313.1 KEGG: acr:Acry_0577 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 626878 9386474 Hden_0594 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003754736.1 626150 R 582899 CDS YP_003754737.1 300022126 9386475 627023..627715 1 NC_014313.1 KEGG: met:M446_0946 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 627715 9386475 Hden_0595 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003754737.1 627023 D 582899 CDS YP_003754738.1 300022127 9386476 complement(627791..628597) 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: mei:Msip34_2466 PAS/PAC sensor protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor protein 628597 9386476 Hden_0596 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor protein YP_003754738.1 627791 R 582899 CDS YP_003754739.1 300022128 9386477 628857..630716 1 NC_014313.1 KEGG: mei:Msip34_2465 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase, nitrate/nitrite-specific, NarQ 630716 9386477 Hden_0597 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ YP_003754739.1 628857 D 582899 CDS YP_003754740.1 300022129 9386478 630733..631404 1 NC_014313.1 KEGG: mei:Msip34_2464 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 631404 9386478 Hden_0598 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003754740.1 630733 D 582899 CDS YP_003754741.1 300022130 9386479 631719..633116 1 NC_014313.1 KEGG: cko:CKO_02656 coproporphyrinogen III oxidase; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 633116 9386479 Hden_0599 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003754741.1 631719 D 582899 CDS YP_003754742.1 300022131 9386480 633113..633640 1 NC_014313.1 PFAM: protein of unknown function DUF1008; KEGG: hha:Hhal_0383 hypothetical protein; hypothetical protein 633640 9386480 Hden_0600 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754742.1 633113 D 582899 CDS YP_003754743.1 300022132 9386481 633640..634329 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: hha:Hhal_0382 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 634329 9386481 Hden_0601 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003754743.1 633640 D 582899 CDS YP_003754744.1 300022133 9386482 634631..636223 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: cak:Caul_1141 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 636223 9386482 Hden_0602 Hyphomicrobium denitrificans ATCC 51888 methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor YP_003754744.1 634631 D 582899 CDS YP_003754745.1 300022134 9386483 636290..636757 1 NC_014313.1 KEGG: smd:Smed_0236 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 636757 9386483 Hden_0603 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheW YP_003754745.1 636290 D 582899 CDS YP_003754746.1 300022135 9386484 complement(636837..637070) 1 NC_014313.1 KEGG: nwi:Nwi_2070 hypothetical protein; hypothetical protein 637070 9386484 Hden_0604 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754746.1 636837 R 582899 CDS YP_003754747.1 300022136 9386485 complement(637137..637382) 1 NC_014313.1 KEGG: nwi:Nwi_2070 hypothetical protein; hypothetical protein 637382 9386485 Hden_0605 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754747.1 637137 R 582899 CDS YP_003754748.1 300022137 9386486 complement(637653..638135) 1 NC_014313.1 TIGRFAM: cyanate lyase; KEGG: msl:Msil_0112 cyanate hydratase; PFAM: Cyanate lyase domain protein; cyanate lyase 638135 9386486 Hden_0606 Hyphomicrobium denitrificans ATCC 51888 cyanate lyase YP_003754748.1 637653 R 582899 CDS YP_003754749.1 300022138 9386487 complement(638207..639406) 1 NC_014313.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vei:Veis_4915 formate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 639406 9386487 Hden_0607 Hyphomicrobium denitrificans ATCC 51888 D-isomer specific 2-hydroxyacid dehydrogenase YP_003754749.1 638207 R 582899 CDS YP_003754750.1 300022139 9386488 complement(639669..640577) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: msl:Msil_2452 LysR family transcriptional regulator; LysR family transcriptional regulator 640577 9386488 Hden_0608 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754750.1 639669 R 582899 CDS YP_003754751.1 300022140 9386489 complement(640743..642218) 1 NC_014313.1 manually curated; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; globin; KEGG: mrd:Mrad2831_4540 fis family transcriptional regulator; SMART: ATPase AAA; Fis family transcriptional regulator 642218 9386489 Hden_0609 Hyphomicrobium denitrificans ATCC 51888 Fis family transcriptional regulator YP_003754751.1 640743 R 582899 CDS YP_003754752.1 300022141 9386490 642267..642752 1 NC_014313.1 KEGG: tgr:Tgr7_1816 cupin 2, conserved barrel; hypothetical protein 642752 9386490 Hden_0610 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754752.1 642267 D 582899 CDS YP_003754753.1 300022142 9386491 642778..643245 1 NC_014313.1 KEGG: met:M446_1940 hypothetical protein; hypothetical protein 643245 9386491 Hden_0611 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754753.1 642778 D 582899 CDS YP_003754754.1 300022143 9386492 643256..643426 1 NC_014313.1 hypothetical protein 643426 9386492 Hden_0612 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754754.1 643256 D 582899 CDS YP_003754755.1 300022144 9386493 643456..645285 1 NC_014313.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; manually curated; KEGG: bmr:BMI_I102 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 645285 9386493 Hden_0613 Hyphomicrobium denitrificans ATCC 51888 dihydroxy-acid dehydratase YP_003754755.1 643456 D 582899 CDS YP_003754756.1 300022145 9386494 complement(645317..647068) 1 NC_014313.1 KEGG: oca:OCAR_5762 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; sporulation domain protein; serine-type D-Ala-D-Ala carboxypeptidase 647068 9386494 Hden_0614 Hyphomicrobium denitrificans ATCC 51888 serine-type D-Ala-D-Ala carboxypeptidase YP_003754756.1 645317 R 582899 CDS YP_003754757.1 300022146 9386495 647402..647653 1 NC_014313.1 KEGG: mgr:MGG_03391 hypothetical protein; hypothetical protein 647653 9386495 Hden_0615 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754757.1 647402 D 582899 CDS YP_003754758.1 300022147 9386496 647697..648086 1 NC_014313.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pla:Plav_2797 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 648086 9386496 Hden_0616 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent Clp protease adaptor protein ClpS YP_003754758.1 647697 D 582899 CDS YP_003754759.1 300022148 9386497 648094..650544 1 NC_014313.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: azc:AZC_1595 ATPase AAA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit clpA 650544 9386497 Hden_0617 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent Clp protease ATP-binding subunit clpA YP_003754759.1 648094 D 582899 CDS YP_003754760.1 300022149 9386498 complement(650632..651273) 1 NC_014313.1 KEGG: dsh:Dshi_0026 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 651273 9386498 Hden_0618 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003754760.1 650632 R 582899 CDS YP_003754761.1 300022150 9386499 complement(651349..651813) 1 NC_014313.1 PFAM: histidine triad (HIT) protein; KEGG: rlg:Rleg_1771 histidine triad (HIT) protein; histidine triad (HIT) protein 651813 9386499 Hden_0619 Hyphomicrobium denitrificans ATCC 51888 histidine triad (HIT) protein YP_003754761.1 651349 R 582899 CDS YP_003754762.1 300022151 9386500 complement(651926..653098) 1 NC_014313.1 PFAM: protein of unknown function DUF482; KEGG: pla:Plav_2802 hypothetical protein; hypothetical protein 653098 9386500 Hden_0620 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754762.1 651926 R 582899 CDS YP_003754763.1 300022152 9386501 complement(653223..653972) 1 NC_014313.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: xau:Xaut_3792 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 653972 9386501 Hden_0621 Hyphomicrobium denitrificans ATCC 51888 glycerophosphoryl diester phosphodiesterase YP_003754763.1 653223 R 582899 CDS YP_003754764.1 300022153 9386502 complement(653976..654437) 1 NC_014313.1 PFAM: endoribonuclease L-PSP; KEGG: bmr:BMI_I1176 endoribonuclease L-PSP; endoribonuclease L-PSP 654437 9386502 Hden_0622 Hyphomicrobium denitrificans ATCC 51888 endoribonuclease L-PSP YP_003754764.1 653976 R 582899 CDS YP_003754765.1 300022154 9386503 654569..655441 1 NC_014313.1 PFAM: Domain of unknown function DUF1849; KEGG: bid:Bind_1791 hypothetical protein; hypothetical protein 655441 9386503 Hden_0623 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754765.1 654569 D 582899 CDS YP_003754766.1 300022155 9386504 complement(655506..655793) 1 NC_014313.1 KEGG: azc:AZC_1853 hypothetical protein; hypothetical protein 655793 9386504 Hden_0624 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754766.1 655506 R 582899 CDS YP_003754767.1 300022156 9386505 655901..656335 1 NC_014313.1 KEGG: mmr:Mmar10_1276 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 656335 9386505 Hden_0625 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003754767.1 655901 D 582899 CDS YP_003754768.1 300022157 9386506 656342..657712 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpb:RPB_2413 response regulator PleD; SMART: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 657712 9386506 Hden_0626 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver modulated diguanylate cyclase YP_003754768.1 656342 D 582899 CDS YP_003754769.1 300022158 9386507 complement(658279..658446) 1 NC_014313.1 KEGG: sjp:SJA_C1-01020 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 658446 9386507 Hden_0627 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L33 YP_003754769.1 658279 R 582899 CDS YP_003754770.1 300022159 9386508 complement(658523..659230) 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: cak:Caul_1500 NUDIX hydrolase; NUDIX hydrolase 659230 9386508 Hden_0628 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003754770.1 658523 R 582899 CDS YP_003754771.1 300022160 9386509 complement(659249..659719) 1 NC_014313.1 PFAM: protein of unknown function DUF983; KEGG: msl:Msil_3844 protein of unknown function DUF983; hypothetical protein 659719 9386509 Hden_0629 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754771.1 659249 R 582899 CDS YP_003754772.1 300022161 9386510 complement(659772..662075) 1 NC_014313.1 PFAM: ribonuclease II; RNA binding S1 domain protein; manually curated; KEGG: mno:Mnod_7411 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R 662075 9386510 Hden_0630 Hyphomicrobium denitrificans ATCC 51888 ribonuclease R YP_003754772.1 659772 R 582899 CDS YP_003754773.1 300022162 9386511 complement(662072..664834) 1 NC_014313.1 SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; KEGG: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I 664834 9386511 Hden_0631 Hyphomicrobium denitrificans ATCC 51888 DNA topoisomerase I YP_003754773.1 662072 R 582899 CDS YP_003754774.1 300022163 9386512 665058..665237 1 NC_014313.1 KEGG: rcu:RCOM_1781100 Nodulation protein W; nodulation protein W 665237 9386512 Hden_0632 Hyphomicrobium denitrificans ATCC 51888 nodulation protein W YP_003754774.1 665058 D 582899 CDS YP_003754775.1 300022164 9386513 complement(665271..666470) 1 NC_014313.1 KEGG: nha:Nham_2285 DNA processing protein DprA, TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 666470 9386513 Hden_0633 Hyphomicrobium denitrificans ATCC 51888 DNA protecting protein DprA YP_003754775.1 665271 R 582899 CDS YP_003754776.1 300022165 9386514 complement(666457..667059) 1 NC_014313.1 PFAM: protein of unknown function DUF205; KEGG: ara:Arad_1894 glycerol-3-phosphate acyltransferase PlsY; hypothetical protein 667059 9386514 Hden_0634 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754776.1 666457 R 582899 CDS YP_003754777.1 300022166 9386515 complement(667094..668440) 1 NC_014313.1 KEGG: mno:Mnod_3311 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase; PFAM: amidohydrolase; dihydroorotase 668440 9386515 Hden_0635 Hyphomicrobium denitrificans ATCC 51888 dihydroorotase YP_003754777.1 667094 R 582899 CDS YP_003754778.1 300022167 9386516 complement(668440..669411) 1 NC_014313.1 TIGRFAM: aspartate carbamoyltransferase; KEGG: pla:Plav_2836 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase 669411 9386516 Hden_0636 Hyphomicrobium denitrificans ATCC 51888 aspartate carbamoyltransferase YP_003754778.1 668440 R 582899 CDS YP_003754779.1 300022168 9386517 complement(669527..670027) 1 NC_014313.1 KEGG: rsq:Rsph17025_1879 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; Holliday junction resolvase YqgF 670027 9386517 Hden_0637 Hyphomicrobium denitrificans ATCC 51888 Holliday junction resolvase YqgF YP_003754779.1 669527 R 582899 CDS YP_003754780.1 300022169 9386518 670238..670525 1 NC_014313.1 KEGG: oca:OCAR_5794 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 670525 9386518 Hden_0638 Hyphomicrobium denitrificans ATCC 51888 glutamyl-tRNA(Gln) amidotransferase subunit C YP_003754780.1 670238 D 582899 CDS YP_003754781.1 300022170 9386519 670529..670942 1 NC_014313.1 KEGG: mno:Mnod_0669 hypothetical protein; hypothetical protein 670942 9386519 Hden_0639 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754781.1 670529 D 582899 CDS YP_003754782.1 300022171 9386520 670939..672438 1 NC_014313.1 KEGG: rpt:Rpal_3517 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 672438 9386520 Hden_0640 Hyphomicrobium denitrificans ATCC 51888 glutamyl-tRNA(Gln) amidotransferase subunit A YP_003754782.1 670939 D 582899 CDS YP_003754783.1 300022172 9386521 672442..672792 1 NC_014313.1 KEGG: oca:OCAR_5798 T-protein; PFAM: chorismate mutase, type II; SMART: chorismate mutase; chorismate mutase, type II 672792 9386521 Hden_0641 Hyphomicrobium denitrificans ATCC 51888 chorismate mutase, type II YP_003754783.1 672442 D 582899 CDS YP_003754784.1 300022173 9386522 672785..673084 1 NC_014313.1 KEGG: mno:Mnod_3319 hypothetical protein; hypothetical protein 673084 9386522 Hden_0642 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754784.1 672785 D 582899 CDS YP_003754785.1 300022174 9386523 673139..674620 1 NC_014313.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; KEGG: mpo:Mpop_3262 glutamyl-tRNA(Gln) amidotransferase, B subunit; SMART: Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 674620 9386523 Hden_0643 Hyphomicrobium denitrificans ATCC 51888 glutamyl-tRNA(Gln) amidotransferase subunit B YP_003754785.1 673139 D 582899 CDS YP_003754786.1 300022175 9386524 complement(674644..674781) 1 NC_014313.1 hypothetical protein 674781 9386524 Hden_0644 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754786.1 674644 R 582899 CDS YP_003754787.1 300022176 9386525 complement(674949..676346) 1 NC_014313.1 PFAM: cytochrome P450; KEGG: mno:Mnod_6754 cytochrome P450; cytochrome P450 676346 9386525 Hden_0645 Hyphomicrobium denitrificans ATCC 51888 cytochrome P450 YP_003754787.1 674949 R 582899 CDS YP_003754788.1 300022177 9386526 complement(676428..676589) 1 NC_014313.1 hypothetical protein 676589 9386526 Hden_0646 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754788.1 676428 R 582899 CDS YP_003754789.1 300022178 9386527 complement(676701..677231) 1 NC_014313.1 KEGG: pmr:PMI3534 hypothetical protein; hypothetical protein 677231 9386527 Hden_0647 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754789.1 676701 R 582899 CDS YP_003754790.1 300022179 9386528 complement(677350..677763) 1 NC_014313.1 KEGG: mxa:MXAN_6419 hypothetical protein; hypothetical protein 677763 9386528 Hden_0648 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754790.1 677350 R 582899 CDS YP_003754791.1 300022180 9386529 677963..678931 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mms:mma_0551 NADPH2:quinone reductase; alcohol dehydrogenase zinc-binding domain-containing protein 678931 9386529 Hden_0649 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003754791.1 677963 D 582899 CDS YP_003754792.1 300022181 9386530 678940..679593 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: xau:Xaut_3798 glutathione S-transferase domain-containing protein; glutathione S-transferase 679593 9386530 Hden_0650 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003754792.1 678940 D 582899 CDS YP_003754793.1 300022182 9386531 complement(679627..679905) 1 NC_014313.1 KEGG: cai:Caci_7322 hypothetical protein; hypothetical protein 679905 9386531 Hden_0651 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754793.1 679627 R 582899 CDS YP_003754794.1 300022183 9386532 680240..680587 1 NC_014313.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pla:Plav_2849 Sel1 domain-containing protein; Sel1 domain-containing protein repeat-containing protein 680587 9386532 Hden_0652 Hyphomicrobium denitrificans ATCC 51888 Sel1 domain-containing protein repeat-containing protein YP_003754794.1 680240 D 582899 CDS YP_003754795.1 300022184 9386533 complement(680631..681218) 1 NC_014313.1 KEGG: sma:SAV_5152 hypothetical protein; hypothetical protein 681218 9386533 Hden_0653 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754795.1 680631 R 582899 CDS YP_003754796.1 300022185 9386535 complement(681647..681781) 1 NC_014313.1 hypothetical protein 681781 9386535 Hden_0654 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754796.1 681647 R 582899 CDS YP_003754797.1 300022186 9386536 complement(681932..682396) 1 NC_014313.1 KEGG: cag:Cagg_2731 secretion protein HlyD family protein; hypothetical protein 682396 9386536 Hden_0655 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754797.1 681932 R 582899 CDS YP_003754798.1 300022187 9386537 complement(682393..682629) 1 NC_014313.1 KEGG: ago:AGOS_AEL256C AEL256Cp; hypothetical protein 682629 9386537 Hden_0656 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754798.1 682393 R 582899 CDS YP_003754799.1 300022188 9386538 complement(682626..683045) 1 NC_014313.1 KEGG: rpb:RPB_3312 hypothetical protein; hypothetical protein 683045 9386538 Hden_0657 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754799.1 682626 R 582899 CDS YP_003754800.1 300022189 9386539 complement(683274..684263) 1 NC_014313.1 KEGG: pwa:Pecwa_0674 hypothetical protein; hypothetical protein 684263 9386539 Hden_0658 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754800.1 683274 R 582899 CDS YP_003754801.1 300022190 9386540 complement(684260..685042) 1 NC_014313.1 KEGG: ava:Ava_0764 hypothetical protein; hypothetical protein 685042 9386540 Hden_0659 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754801.1 684260 R 582899 CDS YP_003754802.1 300022191 9386541 complement(685039..686163) 1 NC_014313.1 KEGG: nph:NP3638A transducer protein htr8; hypothetical protein 686163 9386541 Hden_0660 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754802.1 685039 R 582899 CDS YP_003754803.1 300022192 9386542 complement(686655..688853) 1 NC_014313.1 KEGG: smd:Smed_1346 hypothetical protein; hypothetical protein 688853 9386542 Hden_0661 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754803.1 686655 R 582899 CDS YP_003754804.1 300022193 9386543 complement(688925..689173) 1 NC_014313.1 KEGG: bfs:BF1720 hypothetical protein; hypothetical protein 689173 9386543 Hden_0662 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754804.1 688925 R 582899 CDS YP_003754805.1 300022194 9386544 complement(689170..689853) 1 NC_014313.1 KEGG: ank:AnaeK_0467 exonuclease SbcC; hypothetical protein 689853 9386544 Hden_0663 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754805.1 689170 R 582899 CDS YP_003754806.1 300022195 9386546 complement(690306..691160) 1 NC_014313.1 KEGG: xca:xccb100_1050 hypothetical protein; hypothetical protein 691160 9386546 Hden_0665 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754806.1 690306 R 582899 CDS YP_003754807.1 300022196 9386547 complement(691204..691926) 1 NC_014313.1 KEGG: dma:DMR_14610 hypothetical protein; hypothetical protein 691926 9386547 Hden_0666 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754807.1 691204 R 582899 CDS YP_003754808.1 300022197 9386548 complement(691923..692675) 1 NC_014313.1 KEGG: dma:DMR_14620 hypothetical protein; hypothetical protein 692675 9386548 Hden_0667 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754808.1 691923 R 582899 CDS YP_003754809.1 300022198 9386549 complement(692851..694098) 1 NC_014313.1 KEGG: met:M446_3983 integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein 694098 9386549 Hden_0668 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003754809.1 692851 R 582899 CDS YP_003754810.1 300022199 9386550 694546..695640 1 NC_014313.1 PFAM: protein of unknown function DUF344; KEGG: xau:Xaut_4684 hypothetical protein; hypothetical protein 695640 9386550 Hden_0669 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754810.1 694546 D 582899 CDS YP_003754811.1 300022200 9386551 complement(695727..696143) 1 NC_014313.1 KEGG: mpo:Mpop_2607 large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 696143 9386551 Hden_0670 Hyphomicrobium denitrificans ATCC 51888 large conductance mechanosensitive channel protein YP_003754811.1 695727 R 582899 CDS YP_003754812.1 300022201 9386552 696452..697498 1 NC_014313.1 KEGG: bra:BRADO4915 threonine-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; L-threonine-O-3-phosphate decarboxylase 697498 9386552 Hden_0671 Hyphomicrobium denitrificans ATCC 51888 L-threonine-O-3-phosphate decarboxylase YP_003754812.1 696452 D 582899 CDS YP_003754813.1 300022202 9386553 697773..700151 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA0765 outer membrane receptor for iron transport; TonB-dependent receptor 700151 9386553 Hden_0672 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003754813.1 697773 D 582899 CDS YP_003754814.1 300022203 9386554 700151..701185 1 NC_014313.1 KEGG: pde:Pden_4169 sulfonate/nitrate transport system substrate-binding protein; sulfonate/nitrate transporter substrate-binding protein 701185 9386554 Hden_0673 Hyphomicrobium denitrificans ATCC 51888 sulfonate/nitrate transporter substrate-binding protein YP_003754814.1 700151 D 582899 CDS YP_003754815.1 300022204 9386555 701192..702004 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pde:Pden_4168 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 702004 9386555 Hden_0674 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003754815.1 701192 D 582899 CDS YP_003754816.1 300022205 9386556 702001..702750 1 NC_014313.1 KEGG: pde:Pden_4167 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 702750 9386556 Hden_0675 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003754816.1 702001 D 582899 CDS YP_003754817.1 300022206 9386557 702747..703988 1 NC_014313.1 PFAM: NnrS family protein; KEGG: pde:Pden_4166 NnrS family protein; NnrS family protein 703988 9386557 Hden_0676 Hyphomicrobium denitrificans ATCC 51888 NnrS family protein YP_003754817.1 702747 D 582899 CDS YP_003754818.1 300022207 9386558 703985..704956 1 NC_014313.1 PFAM: NnrS family protein; KEGG: msl:Msil_1524 NnrS family protein; NnrS family protein 704956 9386558 Hden_0677 Hyphomicrobium denitrificans ATCC 51888 NnrS family protein YP_003754818.1 703985 D 582899 CDS YP_003754819.1 300022208 9386559 complement(704953..705123) 1 NC_014313.1 hypothetical protein 705123 9386559 Hden_0678 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754819.1 704953 R 582899 CDS YP_003754820.1 300022209 9386560 complement(705344..706024) 1 NC_014313.1 PFAM: DSBA oxidoreductase; KEGG: dsh:Dshi_4063 DsbA oxidoreductase; DSBA oxidoreductase 706024 9386560 Hden_0679 Hyphomicrobium denitrificans ATCC 51888 DSBA oxidoreductase YP_003754820.1 705344 R 582899 CDS YP_003754821.1 300022210 9386561 complement(706107..706583) 1 NC_014313.1 PFAM: protein of unknown function DUF442; KEGG: abo:ABO_1944 hypothetical protein; hypothetical protein 706583 9386561 Hden_0680 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754821.1 706107 R 582899 CDS YP_003754822.1 300022211 9386562 complement(706603..707691) 1 NC_014313.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mag:amb0857 transporter component; hypothetical protein 707691 9386562 Hden_0681 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754822.1 706603 R 582899 CDS YP_003754823.1 300022212 9386563 708054..708431 1 NC_014313.1 KEGG: rpd:RPD_4201 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 708431 9386563 Hden_0682 Hyphomicrobium denitrificans ATCC 51888 ArsR family transcriptional regulator YP_003754823.1 708054 D 582899 CDS YP_003754824.1 300022213 9386564 708609..709643 1 NC_014313.1 KEGG: tgr:Tgr7_2207 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 709643 9386564 Hden_0683 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003754824.1 708609 D 582899 CDS YP_003754825.1 300022214 9386565 709648..710733 1 NC_014313.1 KEGG: tgr:Tgr7_2205 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; geranylgeranyl reductase 710733 9386565 Hden_0684 Hyphomicrobium denitrificans ATCC 51888 geranylgeranyl reductase YP_003754825.1 709648 D 582899 CDS YP_003754826.1 300022215 9386566 710755..712056 1 NC_014313.1 KEGG: tkm:TK90_0644 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 712056 9386566 Hden_0685 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003754826.1 710755 D 582899 CDS YP_003754827.1 300022216 9386567 712053..713141 1 NC_014313.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: tgr:Tgr7_2206 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 713141 9386567 Hden_0686 Hyphomicrobium denitrificans ATCC 51888 biotin/lipoate A/B protein ligase YP_003754827.1 712053 D 582899 CDS YP_003754828.1 300022217 9386568 713138..713833 1 NC_014313.1 KEGG: tgr:Tgr7_0821 GMP synthase - glutamine amidotransferase domain-like protein; GMP synthase - glutamine amidotransferase domain-like protein 713833 9386568 Hden_0687 Hyphomicrobium denitrificans ATCC 51888 GMP synthase - glutamine amidotransferase domain-like protein YP_003754828.1 713138 D 582899 CDS YP_003754829.1 300022218 9386569 714007..714384 1 NC_014313.1 KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein 714384 9386569 Hden_0688 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754829.1 714007 D 582899 CDS YP_003754830.1 300022219 9386570 714410..715153 1 NC_014313.1 KEGG: tkm:TK90_0632 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 715153 9386570 Hden_0689 Hyphomicrobium denitrificans ATCC 51888 iron-sulfur cluster-binding protein YP_003754830.1 714410 D 582899 CDS YP_003754831.1 300022220 9386571 715200..716600 1 NC_014313.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: afr:AFE_2586 heterodisulfide reductase subunit B, homolog; hypothetical protein 716600 9386571 Hden_0690 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754831.1 715200 D 582899 CDS YP_003754832.1 300022221 9386572 716665..717714 1 NC_014313.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: tgr:Tgr7_2214 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 717714 9386572 Hden_0691 Hyphomicrobium denitrificans ATCC 51888 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_003754832.1 716665 D 582899 CDS YP_003754833.1 300022222 9386573 717719..718567 1 NC_014313.1 KEGG: afr:AFE_2552 hypothetical protein; hypothetical protein 718567 9386573 Hden_0692 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754833.1 717719 D 582899 CDS YP_003754834.1 300022223 9386574 718580..719362 1 NC_014313.1 KEGG: tgr:Tgr7_2212 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C 719362 9386574 Hden_0693 Hyphomicrobium denitrificans ATCC 51888 heterodisulfide reductase subunit C YP_003754834.1 718580 D 582899 CDS YP_003754835.1 300022224 9386575 719411..720355 1 NC_014313.1 KEGG: tgr:Tgr7_2211 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; CoB--CoM heterodisulfide reductase 720355 9386575 Hden_0694 Hyphomicrobium denitrificans ATCC 51888 CoB--CoM heterodisulfide reductase YP_003754835.1 719411 D 582899 CDS YP_003754836.1 300022225 9386576 720361..720831 1 NC_014313.1 KEGG: hypothetical protein; hypothetical protein 720831 9386576 Hden_0695 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754836.1 720361 D 582899 CDS YP_003754837.1 300022226 9386577 720866..721306 1 NC_014313.1 PFAM: glycine cleavage system protein H; KEGG: tgr:Tgr7_2208 glycine cleavage system protein H; glycine cleavage system protein H 721306 9386577 Hden_0696 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein H YP_003754837.1 720866 D 582899 CDS YP_003754838.1 300022227 9386578 complement(721328..722740) 1 NC_014313.1 PFAM: cytochrome P450; KEGG: met:M446_1094 cytochrome P450; cytochrome P450 722740 9386578 Hden_0697 Hyphomicrobium denitrificans ATCC 51888 cytochrome P450 YP_003754838.1 721328 R 582899 CDS YP_003754839.1 300022228 9386579 complement(722917..723147) 1 NC_014313.1 PFAM: SirA family protein; KEGG: mag:amb0858 redox protein; SirA family protein 723147 9386579 Hden_0698 Hyphomicrobium denitrificans ATCC 51888 SirA family protein YP_003754839.1 722917 R 582899 CDS YP_003754840.1 300022229 9386580 complement(723296..724351) 1 NC_014313.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE; hypothetical protein 724351 9386580 Hden_0699 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754840.1 723296 R 582899 CDS YP_003754841.1 300022230 9386581 complement(724364..724738) 1 NC_014313.1 KEGG: xau:Xaut_1527 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 724738 9386581 Hden_0700 Hyphomicrobium denitrificans ATCC 51888 ArsR family transcriptional regulator YP_003754841.1 724364 R 582899 CDS YP_003754842.1 300022231 9386582 complement(724796..725131) 1 NC_014313.1 KEGG: mdi:METDI0763 regulatory protein SoxS precursor; regulatory protein SoxS 725131 9386582 Hden_0701 Hyphomicrobium denitrificans ATCC 51888 regulatory protein SoxS YP_003754842.1 724796 R 582899 CDS YP_003754843.1 300022232 9386583 complement(725184..725852) 1 NC_014313.1 KEGG: rpt:Rpal_4962 hypothetical protein; hypothetical protein 725852 9386583 Hden_0702 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754843.1 725184 R 582899 CDS YP_003754844.1 300022233 9386584 complement(725830..726663) 1 NC_014313.1 KEGG: xau:Xaut_1522 hypothetical protein; hypothetical protein 726663 9386584 Hden_0703 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754844.1 725830 R 582899 CDS YP_003754845.1 300022234 9386585 726815..727276 1 NC_014313.1 KEGG: rpd:RPD_4255 sulfur oxidation protein SoxY; sulfur oxidation protein SoxY 727276 9386585 Hden_0704 Hyphomicrobium denitrificans ATCC 51888 sulfur oxidation protein SoxY YP_003754845.1 726815 D 582899 CDS YP_003754846.1 300022235 9386586 727314..727643 1 NC_014313.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: rpt:Rpal_4959 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ 727643 9386586 Hden_0705 Hyphomicrobium denitrificans ATCC 51888 sulfur oxidation protein SoxZ YP_003754846.1 727314 D 582899 CDS YP_003754847.1 300022236 9386587 727686..729374 1 NC_014313.1 PFAM: 5'-nucleotidase domain protein; KEGG: bja:blr3515 Mn-dependent hydrolase; 5'-nucleotidase domain-containing protein 729374 9386587 Hden_0706 Hyphomicrobium denitrificans ATCC 51888 5'-nucleotidase domain-containing protein YP_003754847.1 727686 D 582899 CDS YP_003754848.1 300022237 9386588 complement(729604..730869) 1 NC_014313.1 PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type 730869 9386588 Hden_0707 Hyphomicrobium denitrificans ATCC 51888 transposase mutator type YP_003754848.1 729604 R 582899 CDS YP_003754849.1 300022238 9386589 join(731031..731420,731420..731869) 1 NC_014313.1 manually curated; KEGG: nha:Nham_3887 transposase and inactivated derivatives-like; transposase 731869 9386589 Hden_0708 Hyphomicrobium denitrificans ATCC 51888 transposase YP_003754849.1 731031 D 582899 CDS YP_003754850.1 300022239 9386590 731935..733170 1 NC_014313.1 PFAM: transposase IS4 family protein; KEGG: mdi:METDI2654 transposase of IS1357, IS701 family; transposase IS4 family protein 733170 9386590 Hden_0709 Hyphomicrobium denitrificans ATCC 51888 transposase IS4 family protein YP_003754850.1 731935 D 582899 CDS YP_003754851.1 300022240 9386591 complement(733428..734225) 1 NC_014313.1 KEGG: mdi:METDI2655 transcriptional repressor of DCM dehalogenase; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; excisionase family DNA binding domain-containing protein 734225 9386591 Hden_0710 Hyphomicrobium denitrificans ATCC 51888 excisionase family DNA binding domain-containing protein YP_003754851.1 733428 R 582899 CDS YP_003754852.1 300022241 9386592 734916..735782 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: mdi:METDI2656 dichloromethane dehalogenase (DCM dehalogenase); glutathione S-transferase 735782 9386592 Hden_0711 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003754852.1 734916 D 582899 CDS YP_003754853.1 300022242 9386593 735960..736946 1 NC_014313.1 KEGG: mdi:METDI2657 hypothetical protein; hypothetical protein 736946 9386593 Hden_0712 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754853.1 735960 D 582899 CDS YP_003754854.1 300022243 9386594 736981..737559 1 NC_014313.1 KEGG: mdi:METDI2658 hypothetical protein; hypothetical protein 737559 9386594 Hden_0713 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754854.1 736981 D 582899 CDS YP_003754855.1 300022244 9386595 complement(737670..738935) 1 NC_014313.1 PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type 738935 9386595 Hden_0714 Hyphomicrobium denitrificans ATCC 51888 transposase mutator type YP_003754855.1 737670 R 582899 CDS YP_003754856.1 300022245 9386596 739381..740853 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 740853 9386596 Hden_0715 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754856.1 739381 D 582899 CDS YP_003754857.1 300022246 9386597 741108..741686 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: mmb:Mmol_0057 TetR family transcriptional regulator; TetR family transcriptional regulator 741686 9386597 Hden_0716 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754857.1 741108 D 582899 CDS YP_003754858.1 300022247 9386598 complement(742421..743374) 1 NC_014313.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pca:Pcar_2639 LysR family transcriptional regulator; LysR family transcriptional regulator 743374 9386598 Hden_0717 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754858.1 742421 R 582899 CDS YP_003754859.1 300022248 9386599 744049..745296 1 NC_014313.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_B3588 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 745296 9386599 Hden_0718 Hyphomicrobium denitrificans ATCC 51888 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003754859.1 744049 D 582899 CDS YP_003754860.1 300022249 9386600 745472..745921 1 NC_014313.1 PFAM: protein of unknown function DUF442; KEGG: reu:Reut_B3588 hypothetical protein; hypothetical protein 745921 9386600 Hden_0719 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754860.1 745472 D 582899 CDS YP_003754861.1 300022250 9386601 745925..746719 1 NC_014313.1 PFAM: protein of unknown function DUF81; KEGG: azc:AZC_2081 hypothetical protein; hypothetical protein 746719 9386601 Hden_0720 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754861.1 745925 D 582899 CDS YP_003754862.1 300022251 9386602 746753..747814 1 NC_014313.1 SMART: beta-lactamase; KEGG: bja:bll2990 hypothetical protein; beta-lactamase 747814 9386602 Hden_0721 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003754862.1 746753 D 582899 CDS YP_003754863.1 300022252 9386603 complement(747902..748555) 1 NC_014313.1 KEGG: bja:blr6185 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 748555 9386603 Hden_0722 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003754863.1 747902 R 582899 CDS YP_003754864.1 300022253 9386604 complement(748816..749370) 1 NC_014313.1 KEGG: bid:Bind_0534 hypothetical protein; hypothetical protein 749370 9386604 Hden_0723 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754864.1 748816 R 582899 CDS YP_003754865.1 300022254 9386606 complement(750844..751467) 1 NC_014313.1 KEGG: alv:Alvin_0640 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 751467 9386606 Hden_0725 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003754865.1 750844 R 582899 CDS YP_003754866.1 300022255 9386607 complement(751448..753949) 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; GAF domain protein; KEGG: mag:amb0896 C4-dicarboxylate transport sensor protein DctS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; multi-sensor signal transduction histidine kinase 753949 9386607 Hden_0726 Hyphomicrobium denitrificans ATCC 51888 multi-sensor signal transduction histidine kinase YP_003754866.1 751448 R 582899 CDS YP_003754867.1 300022256 9386608 complement(754021..755187) 1 NC_014313.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: psa:PST_0144 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 755187 9386608 Hden_0727 Hyphomicrobium denitrificans ATCC 51888 acyl-CoA dehydrogenase domain-containing protein YP_003754867.1 754021 R 582899 CDS YP_003754868.1 300022257 9386609 complement(755272..755574) 1 NC_014313.1 KEGG: mba:Mbar_A3281 hypothetical protein; hypothetical protein 755574 9386609 Hden_0728 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754868.1 755272 R 582899 CDS YP_003754869.1 300022258 9386610 complement(755589..755867) 1 NC_014313.1 KEGG: aba:acid345_2739 aspartyl/asparaginyl beta-hydroxylase; hypothetical protein 755867 9386610 Hden_0729 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754869.1 755589 R 582899 CDS YP_003754870.1 300022259 9386611 complement(756058..756681) 1 NC_014313.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) 756681 9386611 Hden_0730 Hyphomicrobium denitrificans ATCC 51888 NAD(P)H dehydrogenase (quinone) YP_003754870.1 756058 R 582899 CDS YP_003754871.1 300022260 9386612 756943..757578 1 NC_014313.1 KEGG: gbe:GbCGDNIH1_0908 peroxidase; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; peroxiredoxin-like; Peroxidase 757578 9386612 Hden_0731 Hyphomicrobium denitrificans ATCC 51888 Peroxidase YP_003754871.1 756943 D 582899 CDS YP_003754872.1 300022261 9386613 757802..759076 1 NC_014313.1 PFAM: fatty acid desaturase; KEGG: lbf:LBF_2715 flavodoxin reductase; fatty acid desaturase 759076 9386613 Hden_0732 Hyphomicrobium denitrificans ATCC 51888 fatty acid desaturase YP_003754872.1 757802 D 582899 CDS YP_003754873.1 300022262 9386614 759144..759545 1 NC_014313.1 PFAM: globin; KEGG: tkm:TK90_2328 globin; globin 759545 9386614 Hden_0733 Hyphomicrobium denitrificans ATCC 51888 globin YP_003754873.1 759144 D 582899 CDS YP_003754874.1 300022263 9386615 759581..760663 1 NC_014313.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; oxidoreductase FAD-binding domain protein; KEGG: pmy:Pmen_2542 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 760663 9386615 Hden_0734 Hyphomicrobium denitrificans ATCC 51888 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_003754874.1 759581 D 582899 CDS YP_003754875.1 300022264 9386616 760703..761209 1 NC_014313.1 PFAM: ferric-uptake regulator; KEGG: mch:Mchl_0456 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 761209 9386616 Hden_0735 Hyphomicrobium denitrificans ATCC 51888 Fur family ferric uptake regulator YP_003754875.1 760703 D 582899 CDS YP_003754876.1 300022265 9386617 complement(761299..761619) 1 NC_014313.1 PFAM: protein of unknown function DUF1488; KEGG: bja:bsl0168 hypothetical protein; hypothetical protein 761619 9386617 Hden_0736 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754876.1 761299 R 582899 CDS YP_003754877.1 300022266 9386618 complement(761641..762687) 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: msl:Msil_2478 hypothetical protein; alpha/beta hydrolase fold protein 762687 9386618 Hden_0737 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003754877.1 761641 R 582899 CDS YP_003754878.1 300022267 9386619 762982..763206 1 NC_014313.1 hypothetical protein 763206 9386619 Hden_0738 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754878.1 762982 D 582899 CDS YP_003754879.1 300022268 9386620 763263..763907 1 NC_014313.1 KEGG: mms:mma_2479 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 763907 9386620 Hden_0739 Hyphomicrobium denitrificans ATCC 51888 flavin reductase YP_003754879.1 763263 D 582899 CDS YP_003754880.1 300022269 9386621 764123..765016 1 NC_014313.1 SMART: beta-lactamase; KEGG: azc:AZC_2082 beta-lactamase-like protein; beta-lactamase 765016 9386621 Hden_0740 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003754880.1 764123 D 582899 CDS YP_003754881.1 300022270 9386622 complement(765132..766274) 1 NC_014313.1 KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG, PFAM: Di-haem cytochrome C peroxidase; cytochrome-c peroxidase 766274 9386622 Hden_0741 Hyphomicrobium denitrificans ATCC 51888 cytochrome-c peroxidase YP_003754881.1 765132 R 582899 CDS YP_003754882.1 300022271 9386623 complement(766293..766982) 1 NC_014313.1 PFAM: electron transporter SCO1/SenC; KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG; electron transporter SCO1/SenC 766982 9386623 Hden_0742 Hyphomicrobium denitrificans ATCC 51888 electron transporter SCO1/SenC YP_003754882.1 766293 R 582899 CDS YP_003754883.1 300022272 9386624 complement(766986..768272) 1 NC_014313.1 KEGG: mca:MCA0317 selenium-binding protein; selenium-binding protein 768272 9386624 Hden_0743 Hyphomicrobium denitrificans ATCC 51888 selenium-binding protein YP_003754883.1 766986 R 582899 CDS YP_003754884.1 300022273 9386626 complement(768894..769241) 1 NC_014313.1 KEGG: ppu:PP_2422 alkylhydroperoxidase-like protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein 769241 9386626 Hden_0745 Hyphomicrobium denitrificans ATCC 51888 alkylhydroperoxidase like protein YP_003754884.1 768894 R 582899 CDS YP_003754885.1 300022274 9386627 770017..771906 1 NC_014313.1 PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mes:Meso_2063 TonB-dependent receptor; TonB-dependent receptor plug 771906 9386627 Hden_0746 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor plug YP_003754885.1 770017 D 582899 CDS YP_003754886.1 300022275 9386628 771983..772612 1 NC_014313.1 KEGG: azl:AZL_007810 hypothetical protein; hypothetical protein 772612 9386628 Hden_0747 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754886.1 771983 D 582899 CDS YP_003754887.1 300022276 9386629 772575..773540 1 NC_014313.1 TIGRFAM: TonB family protein; KEGG: rlg:Rleg_3266 TonB family protein; TonB family protein 773540 9386629 Hden_0748 Hyphomicrobium denitrificans ATCC 51888 TonB family protein YP_003754887.1 772575 D 582899 CDS YP_003754888.1 300022277 9386630 773617..774174 1 NC_014313.1 KEGG: rlt:Rleg2_2272 hypothetical protein; hypothetical protein 774174 9386630 Hden_0749 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754888.1 773617 D 582899 CDS YP_003754889.1 300022278 9386631 complement(774209..774874) 1 NC_014313.1 PFAM: protein of unknown function DUF105; KEGG: oan:Oant_4452 hypothetical protein; hypothetical protein 774874 9386631 Hden_0750 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754889.1 774209 R 582899 CDS YP_003754890.1 300022279 9386632 complement(774955..776037) 1 NC_014313.1 KEGG: cak:Caul_0473 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase 776037 9386632 Hden_0751 Hyphomicrobium denitrificans ATCC 51888 DNA-directed DNA polymerase YP_003754890.1 774955 R 582899 CDS YP_003754891.1 300022280 9386633 776230..776820 1 NC_014313.1 KEGG: asa:ASA_2896 hypothetical protein; hypothetical protein 776820 9386633 Hden_0752 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754891.1 776230 D 582899 CDS YP_003754892.1 300022281 9386634 776917..777561 1 NC_014313.1 KEGG: sjp:SJA_C1-11420 hypothetical protein; hypothetical protein 777561 9386634 Hden_0753 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754892.1 776917 D 582899 CDS YP_003754893.1 300022282 9386635 777527..779020 1 NC_014313.1 KEGG: sal:Sala_2779 hypothetical protein; hypothetical protein 779020 9386635 Hden_0754 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754893.1 777527 D 582899 CDS YP_003754894.1 300022283 9386636 779017..782364 1 NC_014313.1 TIGRFAM: DNA polymerase III subunit alpha; KEGG: xau:Xaut_3468 DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein; DNA polymerase III subunit alpha 782364 9386636 Hden_0755 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunit alpha YP_003754894.1 779017 D 582899 CDS YP_003754895.1 300022284 9386637 782537..783550 1 NC_014313.1 KEGG: azo:azo1336 sulfate transporter substrate-binding protein; TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 783550 9386637 Hden_0756 Hyphomicrobium denitrificans ATCC 51888 sulfate ABC transporter periplasmic sulfate-binding protein YP_003754895.1 782537 D 582899 CDS YP_003754896.1 300022285 9386638 783609..784592 1 NC_014313.1 KEGG: msl:Msil_2419 serine O-acetyltransferase; serine O-acetyltransferase 784592 9386638 Hden_0757 Hyphomicrobium denitrificans ATCC 51888 serine O-acetyltransferase YP_003754896.1 783609 D 582899 CDS YP_003754897.1 300022286 9386639 784685..785596 1 NC_014313.1 KEGG: bid:Bind_1233 hypothetical protein; hypothetical protein 785596 9386639 Hden_0758 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754897.1 784685 D 582899 CDS YP_003754898.1 300022287 9386640 785583..787832 1 NC_014313.1 KEGG: bxe:Bxe_B1552 cysteine desulphurases, SufS; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase 787832 9386640 Hden_0759 Hyphomicrobium denitrificans ATCC 51888 SufS subfamily cysteine desulfurase YP_003754898.1 785583 D 582899 CDS YP_003754899.1 300022288 9386641 788039..788326 1 NC_014313.1 KEGG: isc:IscW_ISCW004815 histidyl-tRNA synthetase; hypothetical protein 788326 9386641 Hden_0760 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754899.1 788039 D 582899 CDS YP_003754900.1 300022289 9386642 complement(788438..789817) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 789817 9386642 Hden_0761 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754900.1 788438 R 582899 CDS YP_003754901.1 300022290 9386643 complement(790295..791005) 1 NC_014313.1 KEGG: eba:ebA2148 chemotaxis response regulator; PFAM: CheB methylesterase; chemotaxis protein CheB 791005 9386643 Hden_0762 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheB YP_003754901.1 790295 R 582899 CDS YP_003754902.1 300022291 9386644 complement(791082..794180) 1 NC_014313.1 KEGG: bid:Bind_3835 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: HWE histidine kinase; MCP methyltransferase CheR-type; hypothetical protein; CheB methylesterase; SMART: MCP methyltransferase CheR-type; PAC repeat-containing protein; PAS domain containing protein; MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor 794180 9386644 Hden_0763 Hyphomicrobium denitrificans ATCC 51888 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor YP_003754902.1 791082 R 582899 CDS YP_003754903.1 300022292 9386645 complement(794245..794976) 1 NC_014313.1 SMART: cyclic nucleotide-binding; KEGG: met:M446_1834 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator 794976 9386645 Hden_0764 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003754903.1 794245 R 582899 CDS YP_003754904.1 300022293 9386646 795125..795529 1 NC_014313.1 KEGG: swi:Swit_5289 hypothetical protein; hypothetical protein 795529 9386646 Hden_0765 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754904.1 795125 D 582899 CDS YP_003754905.1 300022294 9386647 796698..797594 1 NC_014313.1 KEGG: pfl:PFL_2576 hypothetical protein; hypothetical protein 797594 9386647 Hden_0766 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754905.1 796698 D 582899 CDS YP_003754906.1 300022295 9386648 797605..797766 1 NC_014313.1 KEGG: rsk:RSKD131_1931 hypothetical protein; hypothetical protein 797766 9386648 Hden_0767 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754906.1 797605 D 582899 CDS YP_003754907.1 300022296 9386649 complement(797843..798103) 1 NC_014313.1 KEGG: spe:Spro_1278 cell envelope integrity inner membrane protein TolA; hypothetical protein 798103 9386649 Hden_0768 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754907.1 797843 R 582899 CDS YP_003754908.1 300022297 9386650 complement(798431..798739) 1 NC_014313.1 KEGG: swi:Swit_5230 hypothetical protein; hypothetical protein 798739 9386650 Hden_0769 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754908.1 798431 R 582899 CDS YP_003754909.1 300022298 9386651 799118..801673 1 NC_014313.1 KEGG: rle:RL3714 phytochrome/sensor histidine kinase; PFAM: HWE histidine kinase; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; response regulator receiver; SMART: response regulator receiver; GAF domain protein; PAS/PAC sensor protein 801673 9386651 Hden_0770 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor protein YP_003754909.1 799118 D 582899 CDS YP_003754910.1 300022299 9386652 complement(801714..802076) 1 NC_014313.1 PFAM: nuclear transport factor 2; KEGG: mrd:Mrad2831_5935 signal peptide protein; nuclear transport factor 2 802076 9386652 Hden_0771 Hyphomicrobium denitrificans ATCC 51888 nuclear transport factor 2 YP_003754910.1 801714 R 582899 CDS YP_003754911.1 300022300 9386653 802171..802848 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: mch:Mchl_1454 TetR family transcriptional regulator; TetR family transcriptional regulator 802848 9386653 Hden_0772 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754911.1 802171 D 582899 CDS YP_003754912.1 300022301 9386654 complement(802885..803277) 1 NC_014313.1 PFAM: endoribonuclease L-PSP; KEGG: rer:RER_29590 hypothetical protein; endoribonuclease L-PSP 803277 9386654 Hden_0773 Hyphomicrobium denitrificans ATCC 51888 endoribonuclease L-PSP YP_003754912.1 802885 R 582899 CDS YP_003754913.1 300022302 9386655 complement(803295..804656) 1 NC_014313.1 PFAM: FAD dependent oxidoreductase; KEGG: sil:SPOA0380 hypothetical protein; FAD dependent oxidoreductase 804656 9386655 Hden_0774 Hyphomicrobium denitrificans ATCC 51888 FAD dependent oxidoreductase YP_003754913.1 803295 R 582899 CDS YP_003754914.1 300022303 9386656 804784..806181 1 NC_014313.1 TIGRFAM: glutamine synthetaseII; KEGG: mlo:mlr6210 glutamine synthetase III; PFAM: glutamine synthetase; glutamine synthetaseII 806181 9386656 Hden_0775 Hyphomicrobium denitrificans ATCC 51888 glutamine synthetaseII YP_003754914.1 804784 D 582899 CDS YP_003754915.1 300022304 9386657 806211..807110 1 NC_014313.1 PFAM: glutamine amidotransferase class-II; KEGG: mch:Mchl_1938 glutamine amidotransferase class-II; glutamine amidotransferase class-II 807110 9386657 Hden_0776 Hyphomicrobium denitrificans ATCC 51888 glutamine amidotransferase class-II YP_003754915.1 806211 D 582899 CDS YP_003754916.1 300022305 9386658 807110..807799 1 NC_014313.1 PFAM: glutamate synthase subunit alpha domain protein; KEGG: mch:Mchl_1939 glutamate synthase subunit alpha domain protein; glutamate synthase subunit alpha domain-containing protein 807799 9386658 Hden_0777 Hyphomicrobium denitrificans ATCC 51888 glutamate synthase subunit alpha domain-containing protein YP_003754916.1 807110 D 582899 CDS YP_003754917.1 300022306 9386659 807799..809130 1 NC_014313.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: mei:Msip34_2421 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 809130 9386659 Hden_0778 Hyphomicrobium denitrificans ATCC 51888 ferredoxin-dependent glutamate synthase YP_003754917.1 807799 D 582899 CDS YP_003754918.1 300022307 9386660 complement(809197..809853) 1 NC_014313.1 KEGG: tgr:Tgr7_1702 transcriptional regulator, XRE family; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator 809853 9386660 Hden_0779 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003754918.1 809197 R 582899 CDS YP_003754919.1 300022308 9386661 810090..811844 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: smd:Smed_3317 amino acid permease-associated region; amino acid permease-associated protein 811844 9386661 Hden_0780 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003754919.1 810090 D 582899 CDS YP_003754920.1 300022309 9386662 complement(812201..812941) 1 NC_014313.1 PFAM: extracellular solute-binding protein family 3; KEGG: msl:Msil_3735 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 812941 9386662 Hden_0781 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003754920.1 812201 R 582899 CDS YP_003754921.1 300022310 9386663 complement(812991..813407) 1 NC_014313.1 KEGG: msl:Msil_3734 hypothetical protein; hypothetical protein 813407 9386663 Hden_0782 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754921.1 812991 R 582899 CDS YP_003754922.1 300022311 9386664 complement(813483..815162) 1 NC_014313.1 KEGG: azo:azo3865 quinoprotein ethanol dehydrogenase; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; PQQ-dependent enzyme-like protein 815162 9386664 Hden_0783 Hyphomicrobium denitrificans ATCC 51888 PQQ-dependent enzyme-like protein YP_003754922.1 813483 R 582899 CDS YP_003754923.1 300022312 9386665 815527..816492 1 NC_014313.1 KEGG: bid:Bind_0121 pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; pyruvate dehydrogenase 816492 9386665 Hden_0784 Hyphomicrobium denitrificans ATCC 51888 pyruvate dehydrogenase YP_003754923.1 815527 D 582899 CDS YP_003754924.1 300022313 9386666 816505..817521 1 NC_014313.1 KEGG: bid:Bind_0120 transketolase; PFAM: transketolase; transketolase; SMART: transketolase; transketolase 817521 9386666 Hden_0785 Hyphomicrobium denitrificans ATCC 51888 transketolase YP_003754924.1 816505 D 582899 CDS YP_003754925.1 300022314 9386667 817518..818645 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: gdj:Gdia_3501 branched-chain alpha-keto acid dehydrogenase subunit E2; alpha/beta hydrolase 818645 9386667 Hden_0786 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase YP_003754925.1 817518 D 582899 CDS YP_003754926.1 300022315 9386668 complement(818724..820661) 1 NC_014313.1 KEGG: xau:Xaut_4046 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; Fis family GAF modulated sigma-54 specific transcriptional regulator 820661 9386668 Hden_0787 Hyphomicrobium denitrificans ATCC 51888 Fis family GAF modulated sigma-54 specific transcriptional regulator YP_003754926.1 818724 R 582899 CDS YP_003754927.1 300022316 9386669 complement(820835..821608) 1 NC_014313.1 PFAM: thiazole biosynthesis protein; KEGG: gdj:Gdia_0011 thiazole synthase; thiazole biosynthesis protein 821608 9386669 Hden_0788 Hyphomicrobium denitrificans ATCC 51888 thiazole biosynthesis protein YP_003754927.1 820835 R 582899 CDS YP_003754928.1 300022317 9386670 complement(821612..821809) 1 NC_014313.1 KEGG: rde:RD1_0748 thiamine biosynthesis protein ThiS, TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 821809 9386670 Hden_0789 Hyphomicrobium denitrificans ATCC 51888 thiamine biosynthesis protein ThiS YP_003754928.1 821612 R 582899 CDS YP_003754929.1 300022318 9386671 complement(821834..822037) 1 NC_014313.1 KEGG: cbr:CBG21404 Hypothetical protein CBG21404; hypothetical protein 822037 9386671 Hden_0790 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754929.1 821834 R 582899 CDS YP_003754930.1 300022319 9386672 complement(822055..823533) 1 NC_014313.1 manually curated; TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: mpo:Mpop_2913 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 823533 9386672 Hden_0791 Hyphomicrobium denitrificans ATCC 51888 dihydrolipoamide dehydrogenase YP_003754930.1 822055 R 582899 CDS YP_003754931.1 300022320 9386673 complement(823883..825259) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 825259 9386673 Hden_0792 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754931.1 823883 R 582899 CDS YP_003754932.1 300022321 9386674 825429..825623 1 NC_014313.1 KEGG: dol:Dole_1776 histidine kinase; hypothetical protein 825623 9386674 Hden_0793 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754932.1 825429 D 582899 CDS YP_003754933.1 300022322 9386675 826053..827984 1 NC_014313.1 KEGG: oca:OCAR_7033 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 827984 9386675 Hden_0794 Hyphomicrobium denitrificans ATCC 51888 thiamine biosynthesis protein ThiC YP_003754933.1 826053 D 582899 CDS YP_003754934.1 300022323 9386676 complement(828043..828483) 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: mpt:Mpe_A1589 hypothetical protein; cytochrome C class I 828483 9386676 Hden_0795 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003754934.1 828043 R 582899 CDS YP_003754935.1 300022324 9386677 complement(828569..830302) 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1591 quinoprotein ethanol dehydrogenase precursor; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 830302 9386677 Hden_0796 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003754935.1 828569 R 582899 CDS YP_003754936.1 300022325 9386678 830636..831349 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sal:Sala_0085 oxidoreductase; short-chain dehydrogenase/reductase SDR 831349 9386678 Hden_0797 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003754936.1 830636 D 582899 CDS YP_003754937.1 300022326 9386679 complement(831475..834660) 1 NC_014313.1 KEGG: rlg:Rleg_2200 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 834660 9386679 Hden_0798 Hyphomicrobium denitrificans ATCC 51888 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003754937.1 831475 R 582899 CDS YP_003754938.1 300022327 9386680 complement(834669..835880) 1 NC_014313.1 KEGG: rlt:Rleg2_1990 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 835880 9386680 Hden_0799 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003754938.1 834669 R 582899 CDS YP_003754939.1 300022328 9386681 836164..836766 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: ara:Arad_3404 transcriptional regulator protein; TetR family transcriptional regulator 836766 9386681 Hden_0800 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754939.1 836164 D 582899 CDS YP_003754940.1 300022329 9386683 complement(837510..838757) 1 NC_014313.1 PFAM: patatin; KEGG: mlo:mlr3635 hypothetical protein; patatin 838757 9386683 Hden_0802 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003754940.1 837510 R 582899 CDS YP_003754941.1 300022330 9386684 838890..839756 1 NC_014313.1 KEGG: msl:Msil_0811 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase 839756 9386684 Hden_0803 Hyphomicrobium denitrificans ATCC 51888 3-hydroxybutyrate dehydrogenase YP_003754941.1 838890 D 582899 CDS YP_003754942.1 300022331 9386685 839857..840573 1 NC_014313.1 KEGG: mno:Mnod_4592 acetoacetate decarboxylase; PFAM: acetoacetate decarboxylase; acetoacetate decarboxylase 840573 9386685 Hden_0804 Hyphomicrobium denitrificans ATCC 51888 acetoacetate decarboxylase YP_003754942.1 839857 D 582899 CDS YP_003754943.1 300022332 9386686 complement(840643..841074) 1 NC_014313.1 manually curated; KEGG: met:M446_1940 hypothetical protein; hypothetical protein 841074 9386686 Hden_0805 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754943.1 840643 R 582899 CDS YP_003754944.1 300022333 9386687 complement(841346..841888) 1 NC_014313.1 KEGG: aav:Aave_2157 TetR family transcriptional regulator; manually curated; PFAM: regulatory protein TetR; TetR family transcriptional regulator 841888 9386687 Hden_0806 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003754944.1 841346 R 582899 CDS YP_003754945.1 300022334 9386688 841972..843492 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2158 major facilitator superfamily transporter; major facilitator superfamily protein 843492 9386688 Hden_0807 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003754945.1 841972 D 582899 CDS YP_003754946.1 300022335 9386689 complement(843658..844782) 1 NC_014313.1 KEGG: oca:OCAR_6755 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase 844782 9386689 Hden_0808 Hyphomicrobium denitrificans ATCC 51888 ribonucleoside-diphosphate reductase YP_003754946.1 843658 R 582899 CDS YP_003754947.1 300022336 9386690 complement(844811..847681) 1 NC_014313.1 KEGG: nwi:Nwi_2888 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; ribonucleoside-diphosphate reductase subunit alpha 847681 9386690 Hden_0809 Hyphomicrobium denitrificans ATCC 51888 ribonucleoside-diphosphate reductase subunit alpha YP_003754947.1 844811 R 582899 CDS YP_003754948.1 300022337 9386691 complement(848093..849280) 1 NC_014313.1 TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: pde:Pden_1347 methylcitrate synthase; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II 849280 9386691 Hden_0810 Hyphomicrobium denitrificans ATCC 51888 2-methylcitrate synthase/citrate synthase II YP_003754948.1 848093 R 582899 CDS YP_003754949.1 300022338 9386692 complement(849633..850616) 1 NC_014313.1 SMART: beta-lactamase; KEGG: bja:bll4367 hypothetical protein; beta-lactamase 850616 9386692 Hden_0811 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003754949.1 849633 R 582899 CDS YP_003754950.1 300022339 9386693 850735..851622 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_B2817 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 851622 9386693 Hden_0812 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754950.1 850735 D 582899 CDS YP_003754951.1 300022340 9386694 complement(851926..852411) 1 NC_014313.1 KEGG: mfa:Mfla_0310 signal peptide protein; signal peptide protein 852411 9386694 Hden_0813 Hyphomicrobium denitrificans ATCC 51888 signal peptide protein YP_003754951.1 851926 R 582899 CDS YP_003754952.1 300022341 9386695 complement(852550..853197) 1 NC_014313.1 KEGG: mpo:Mpop_3828 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 853197 9386695 Hden_0814 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003754952.1 852550 R 582899 CDS YP_003754953.1 300022342 9386696 complement(853200..854564) 1 NC_014313.1 KEGG: mpo:Mpop_3827 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 854564 9386696 Hden_0815 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003754953.1 853200 R 582899 CDS YP_003754954.1 300022343 9386697 854827..855321 1 NC_014313.1 KEGG: mch:Mchl_0100 hypothetical protein; hypothetical protein 855321 9386697 Hden_0816 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754954.1 854827 D 582899 CDS YP_003754955.1 300022344 9386698 855577..856632 1 NC_014313.1 PFAM: choloylglycine hydrolase; KEGG: gdj:Gdia_2282 choloylglycine hydrolase; choloylglycine hydrolase 856632 9386698 Hden_0817 Hyphomicrobium denitrificans ATCC 51888 choloylglycine hydrolase YP_003754955.1 855577 D 582899 CDS YP_003754956.1 300022345 9386699 complement(856870..858330) 1 NC_014313.1 KEGG: azl:AZL_009970 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 858330 9386699 Hden_0818 Hyphomicrobium denitrificans ATCC 51888 methyl-accepting chemotaxis sensory transducer YP_003754956.1 856870 R 582899 CDS YP_003754957.1 300022346 9386700 complement(858801..859778) 1 NC_014313.1 PFAM: phosphate transporter; KEGG: gme:Gmet_3131 phosphate transporter; phosphate transporter 859778 9386700 Hden_0819 Hyphomicrobium denitrificans ATCC 51888 phosphate transporter YP_003754957.1 858801 R 582899 CDS YP_003754958.1 300022347 9386701 complement(859781..860425) 1 NC_014313.1 KEGG: mpt:Mpe_A3016 hypothetical protein; phosphate transport regulator-like protein 860425 9386701 Hden_0820 Hyphomicrobium denitrificans ATCC 51888 phosphate transport regulator-like protein YP_003754958.1 859781 R 582899 CDS YP_003754959.1 300022348 9386702 860826..860978 1 NC_014313.1 hypothetical protein 860978 9386702 Hden_0821 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754959.1 860826 D 582899 CDS YP_003754960.1 300022349 9386704 861493..862752 1 NC_014313.1 PFAM: Ppx/GppA phosphatase; KEGG: bcs:BCAN_B0683 Ppx/GppA phosphatase; Ppx/GppA phosphatase 862752 9386704 Hden_0822 Hyphomicrobium denitrificans ATCC 51888 Ppx/GppA phosphatase YP_003754960.1 861493 D 582899 CDS YP_003754961.1 300022350 9386705 862749..863477 1 NC_014313.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pla:Plav_1167 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 863477 9386705 Hden_0823 Hyphomicrobium denitrificans ATCC 51888 ribosomal RNA methyltransferase RrmJ/FtsJ YP_003754961.1 862749 D 582899 CDS YP_003754962.1 300022351 9386706 complement(863465..863836) 1 NC_014313.1 KEGG: cai:Caci_3101 peptidase M1 membrane alanine aminopeptidase; hypothetical protein 863836 9386706 Hden_0824 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754962.1 863465 R 582899 CDS YP_003754963.1 300022352 9386707 864059..865570 1 NC_014313.1 SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: azc:AZC_4333 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 865570 9386707 Hden_0825 Hyphomicrobium denitrificans ATCC 51888 inosine-5'-monophosphate dehydrogenase YP_003754963.1 864059 D 582899 CDS YP_003754964.1 300022353 9386708 865607..866029 1 NC_014313.1 PFAM: protein of unknown function DUF1123; KEGG: rpd:RPD_2267 hypothetical protein; hypothetical protein 866029 9386708 Hden_0826 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754964.1 865607 D 582899 CDS YP_003754965.1 300022354 9386709 866041..867336 1 NC_014313.1 PFAM: Fmu (Sun) domain protein; KEGG: mlo:mlr6944 SUN-family protein; Fmu (Sun) domain-containing protein 867336 9386709 Hden_0827 Hyphomicrobium denitrificans ATCC 51888 Fmu (Sun) domain-containing protein YP_003754965.1 866041 D 582899 CDS YP_003754966.1 300022355 9386710 867641..868228 1 NC_014313.1 KEGG: mbn:Mboo_2041 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET 868228 9386710 Hden_0828 Hyphomicrobium denitrificans ATCC 51888 nuclear protein SET YP_003754966.1 867641 D 582899 CDS YP_003754967.1 300022356 9386711 complement(868240..868638) 1 NC_014313.1 KEGG: hau:Haur_1893 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET 868638 9386711 Hden_0829 Hyphomicrobium denitrificans ATCC 51888 nuclear protein SET YP_003754967.1 868240 R 582899 CDS YP_003754968.1 300022357 9386712 868709..869158 1 NC_014313.1 PFAM: TspO/MBR family protein; KEGG: bpy:Bphyt_6800 TspO and MBR like protein; TspO and MBR like protein 869158 9386712 Hden_0830 Hyphomicrobium denitrificans ATCC 51888 TspO and MBR like protein YP_003754968.1 868709 D 582899 CDS YP_003754969.1 300022358 9386713 869286..870833 1 NC_014313.1 KEGG: azc:AZC_3705 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; GMP synthase, large subunit 870833 9386713 Hden_0831 Hyphomicrobium denitrificans ATCC 51888 GMP synthase, large subunit YP_003754969.1 869286 D 582899 CDS YP_003754970.1 300022359 9386714 870987..871406 1 NC_014313.1 KEGG: gau:GAU_1342 hypothetical protein; hypothetical protein 871406 9386714 Hden_0832 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754970.1 870987 D 582899 CDS YP_003754971.1 300022360 9386715 complement(871533..872099) 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rce:RC1_3973 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase 872099 9386715 Hden_0833 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003754971.1 871533 R 582899 CDS YP_003754972.1 300022361 9386716 872223..873293 1 NC_014313.1 PFAM: Uncharacterised protein family UPF0324; KEGG: xau:Xaut_2660 hypothetical protein; hypothetical protein 873293 9386716 Hden_0834 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754972.1 872223 D 582899 CDS YP_003754973.1 300022362 9386717 873313..874227 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oca:OCAR_7550 transcriptional regulator of LysR family; LysR family transcriptional regulator 874227 9386717 Hden_0835 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003754973.1 873313 D 582899 CDS YP_003754974.1 300022363 9386718 complement(874235..874963) 1 NC_014313.1 TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: oca:OCAR_5974 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 874963 9386718 Hden_0836 Hyphomicrobium denitrificans ATCC 51888 leucyl/phenylalanyl-tRNA/protein transferase YP_003754974.1 874235 R 582899 CDS YP_003754975.1 300022364 9386719 complement(874967..876307) 1 NC_014313.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: mno:Mnod_6042 acetyl-CoA carboxylase, biotin carboxylase; SMART: biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase 876307 9386719 Hden_0837 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA carboxylase, biotin carboxylase YP_003754975.1 874967 R 582899 CDS YP_003754976.1 300022365 9386720 complement(876351..876836) 1 NC_014313.1 KEGG: bbt:BBta_4215 biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 876836 9386720 Hden_0838 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003754976.1 876351 R 582899 CDS YP_003754977.1 300022366 9386721 complement(876902..877351) 1 NC_014313.1 TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: rce:RC1_0930 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase, type II 877351 9386721 Hden_0839 Hyphomicrobium denitrificans ATCC 51888 3-dehydroquinate dehydratase, type II YP_003754977.1 876902 R 582899 CDS YP_003754978.1 300022367 9386722 complement(877518..878420) 1 NC_014313.1 PFAM: DSBA oxidoreductase; KEGG: bra:BRADO3507 outer membrane protein; DSBA oxidoreductase 878420 9386722 Hden_0840 Hyphomicrobium denitrificans ATCC 51888 DSBA oxidoreductase YP_003754978.1 877518 R 582899 CDS YP_003754979.1 300022368 9386723 complement(878417..879823) 1 NC_014313.1 PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: bja:bll4295 hypothetical protein; peptidase M48 Ste24p 879823 9386723 Hden_0841 Hyphomicrobium denitrificans ATCC 51888 peptidase M48 Ste24p YP_003754979.1 878417 R 582899 CDS YP_003754980.1 300022369 9386724 complement(880044..883121) 1 NC_014313.1 KEGG: azc:AZC_3627 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribonuclease, Rne/Rng family 883121 9386724 Hden_0842 Hyphomicrobium denitrificans ATCC 51888 ribonuclease, Rne/Rng family YP_003754980.1 880044 R 582899 CDS YP_003754981.1 300022370 9386725 883899..885161 1 NC_014313.1 KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 885161 9386725 Hden_0843 Hyphomicrobium denitrificans ATCC 51888 cell wall hydrolase/autolysin YP_003754981.1 883899 D 582899 CDS YP_003754982.1 300022371 9386726 885309..887894 1 NC_014313.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: azc:AZC_3625 penicillin-binding protein 1A precursor; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 887894 9386726 Hden_0844 Hyphomicrobium denitrificans ATCC 51888 penicillin-binding protein, 1A family YP_003754982.1 885309 D 582899 CDS YP_003754983.1 300022372 9386727 join(888016..888084,888086..889150) 1 NC_014313.1 manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein 889150 9386727 Hden_0845 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754983.1 888016 D 582899 CDS YP_003754984.1 300022373 9386728 complement(889258..889647) 1 NC_014313.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: apt:APA01_21570 malonate semialdehyde decarboxylase; 4-oxalocrotonate tautomerase 889647 9386728 Hden_0846 Hyphomicrobium denitrificans ATCC 51888 4-oxalocrotonate tautomerase YP_003754984.1 889258 R 582899 CDS YP_003754985.1 300022374 9386729 complement(889795..890103) 1 NC_014313.1 KEGG: gyc:GYMC61_3110 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; hypothetical protein 890103 9386729 Hden_0847 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754985.1 889795 R 582899 CDS YP_003754986.1 300022375 9386730 890311..891207 1 NC_014313.1 KEGG: avi:Avi_0413 SAM dependent methyltransferase; SAM dependent methyltransferase 891207 9386730 Hden_0848 Hyphomicrobium denitrificans ATCC 51888 SAM dependent methyltransferase YP_003754986.1 890311 D 582899 CDS YP_003754987.1 300022376 9386731 891204..892013 1 NC_014313.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tRNA/rRNA methyltransferase SpoU; tRNA/rRNA methyltransferase SpoU 892013 9386731 Hden_0849 Hyphomicrobium denitrificans ATCC 51888 tRNA/rRNA methyltransferase SpoU YP_003754987.1 891204 D 582899 CDS YP_003754988.1 300022377 9386732 892018..892956 1 NC_014313.1 PFAM: ribosomal L11 methyltransferase; KEGG: hoh:Hoch_0805 histone-arginine N-methyltransferase; ribosomal L11 methyltransferase 892956 9386732 Hden_0850 Hyphomicrobium denitrificans ATCC 51888 ribosomal L11 methyltransferase YP_003754988.1 892018 D 582899 CDS YP_003754989.1 300022378 9386733 893024..893617 1 NC_014313.1 PFAM: NnrUfamily protein; KEGG: alv:Alvin_3109 NnrUfamily protein; NnrU family protein 893617 9386733 Hden_0851 Hyphomicrobium denitrificans ATCC 51888 NnrU family protein YP_003754989.1 893024 D 582899 CDS YP_003754990.1 300022379 9386734 complement(893627..894253) 1 NC_014313.1 KEGG: psb:Psyr_3507 hypothetical protein; hypothetical protein 894253 9386734 Hden_0852 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754990.1 893627 R 582899 CDS YP_003754991.1 300022380 9386735 complement(894250..895434) 1 NC_014313.1 KEGG: azo:azo0747 hypothetical protein; hypothetical protein 895434 9386735 Hden_0853 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754991.1 894250 R 582899 CDS YP_003754992.1 300022381 9386736 complement(895557..897224) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bbt:BBta_3881 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 897224 9386736 Hden_0854 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003754992.1 895557 R 582899 CDS YP_003754993.1 300022382 9386737 897571..898452 1 NC_014313.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: bbt:BBta_3771 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 898452 9386737 Hden_0855 Hyphomicrobium denitrificans ATCC 51888 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003754993.1 897571 D 582899 CDS YP_003754994.1 300022383 9386738 898615..899409 1 NC_014313.1 PFAM: protein of unknown function DUF2133; KEGG: rpe:RPE_3347 hypothetical protein; hypothetical protein 899409 9386738 Hden_0856 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754994.1 898615 D 582899 CDS YP_003754995.1 300022384 9386739 899440..900789 1 NC_014313.1 PFAM: pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone; pyrrolo-quinoline quinone 900789 9386739 Hden_0857 Hyphomicrobium denitrificans ATCC 51888 pyrrolo-quinoline quinone YP_003754995.1 899440 D 582899 CDS YP_003754996.1 300022385 9386740 900900..902282 1 NC_014313.1 KEGG: rpt:Rpal_3505 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated GTPase EngA 902282 9386740 Hden_0858 Hyphomicrobium denitrificans ATCC 51888 ribosome-associated GTPase EngA YP_003754996.1 900900 D 582899 CDS YP_003754997.1 300022386 9386741 902406..902666 1 NC_014313.1 KEGG: mpo:Mpop_3271 conserved hypothetical protein; exported protein; hypothetical protein 902666 9386741 Hden_0859 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754997.1 902406 D 582899 CDS YP_003754998.1 300022387 9386742 902849..903295 1 NC_014313.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: mch:Mchl_5119 DNA polymerase III chi subunit HolC; DNA polymerase III chi subunit HolC 903295 9386742 Hden_0860 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III chi subunit HolC YP_003754998.1 902849 D 582899 CDS YP_003754999.1 300022388 9386743 903345..904190 1 NC_014313.1 PFAM: protein of unknown function DUF519; KEGG: bja:blr7467 hypothetical protein; hypothetical protein 904190 9386743 Hden_0861 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003754999.1 903345 D 582899 CDS YP_003755000.1 300022389 9386744 904434..904649 1 NC_014313.1 KEGG: bid:Bind_0662 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 904649 9386744 Hden_0862 Hyphomicrobium denitrificans ATCC 51888 cold-shock DNA-binding domain-containing protein YP_003755000.1 904434 D 582899 CDS YP_003755001.1 300022390 9386745 905010..905270 1 NC_014313.1 KEGG: rcu:RCOM_1781100 Nodulation protein W; hypothetical protein 905270 9386745 Hden_0863 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755001.1 905010 D 582899 CDS YP_003755002.1 300022391 9386746 complement(905353..905640) 1 NC_014313.1 KEGG: oan:Oant_1647 hypothetical protein; hypothetical protein 905640 9386746 Hden_0864 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755002.1 905353 R 582899 CDS YP_003755003.1 300022392 9386747 905923..906234 1 NC_014313.1 KEGG: tps:THAPS_10992 hypothetical protein; hypothetical protein 906234 9386747 Hden_0865 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755003.1 905923 D 582899 CDS YP_003755004.1 300022393 9386748 906412..907197 1 NC_014313.1 KEGG: dan:Dana_GF13208 GF13208 gene product from transcript GF13208-RA; hypothetical protein 907197 9386748 Hden_0866 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755004.1 906412 D 582899 CDS YP_003755005.1 300022394 9386749 complement(907318..907686) 1 NC_014313.1 KEGG: mno:Mnod_1693 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 907686 9386749 Hden_0867 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003755005.1 907318 R 582899 CDS YP_003755006.1 300022395 9386750 complement(907800..908450) 1 NC_014313.1 PFAM: protein of unknown function DUF2328; KEGG: mno:Mnod_1690 hypothetical protein; hypothetical protein 908450 9386750 Hden_0868 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755006.1 907800 R 582899 CDS YP_003755007.1 300022396 9386751 908682..909581 1 NC_014313.1 PFAM: inositol monophosphatase; KEGG: oan:Oant_0202 3'(2'),5'-bisphosphate nucleotidase; inositol monophosphatase 909581 9386751 Hden_0869 Hyphomicrobium denitrificans ATCC 51888 inositol monophosphatase YP_003755007.1 908682 D 582899 CDS YP_003755008.1 300022397 9386752 909719..910654 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_0516 hypothetical protein; hypothetical protein 910654 9386752 Hden_0870 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755008.1 909719 D 582899 CDS YP_003755009.1 300022398 9386753 910776..912215 1 NC_014313.1 KEGG: rpd:RPD_3683 hypothetical protein; hypothetical protein 912215 9386753 Hden_0871 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755009.1 910776 D 582899 CDS YP_003755010.1 300022399 9386754 912337..913347 1 NC_014313.1 KEGG: oca:OCAR_4913 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 913347 9386754 Hden_0872 Hyphomicrobium denitrificans ATCC 51888 cation diffusion facilitator family transporter YP_003755010.1 912337 D 582899 CDS YP_003755011.1 300022400 9386755 913583..914314 1 NC_014313.1 KEGG: bme:BMEI1294 nitrogen fixation regulation protein FixK; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 914314 9386755 Hden_0873 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003755011.1 913583 D 582899 CDS YP_003755012.1 300022401 9386756 complement(914396..914641) 1 NC_014313.1 PFAM: hemic uptake protein hemP; KEGG: mmb:Mmol_2109 hemin transporter, hemin uptake protein; hemic uptake protein hemP 914641 9386756 Hden_0874 Hyphomicrobium denitrificans ATCC 51888 hemic uptake protein hemP YP_003755012.1 914396 R 582899 CDS YP_003755013.1 300022402 9386757 914905..915240 1 NC_014313.1 PFAM: antibiotic biosynthesis monooxygenase; KEGG: bja:bll7423 hypothetical protein; antibiotic biosynthesis monooxygenase 915240 9386757 Hden_0875 Hyphomicrobium denitrificans ATCC 51888 antibiotic biosynthesis monooxygenase YP_003755013.1 914905 D 582899 CDS YP_003755014.1 300022403 9386758 915259..915804 1 NC_014313.1 PFAM: protein of unknown function DUF1008; KEGG: atc:AGR_C_4470 hypothetical protein X; hypothetical protein 915804 9386758 Hden_0876 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755014.1 915259 D 582899 CDS YP_003755015.1 300022404 9386759 915811..916734 1 NC_014313.1 PFAM: periplasmic binding protein; KEGG: msl:Msil_1931 periplasmic binding protein; periplasmic binding protein 916734 9386759 Hden_0877 Hyphomicrobium denitrificans ATCC 51888 periplasmic binding protein YP_003755015.1 915811 D 582899 CDS YP_003755016.1 300022405 9386760 916734..917792 1 NC_014313.1 PFAM: transporter permease; KEGG: mrd:Mrad2831_4589 transporter permease; transporter permease 917792 9386760 Hden_0878 Hyphomicrobium denitrificans ATCC 51888 transporter permease YP_003755016.1 916734 D 582899 CDS YP_003755017.1 300022406 9386761 917789..918631 1 NC_014313.1 KEGG: mrd:Mrad2831_4590 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 918631 9386761 Hden_0879 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755017.1 917789 D 582899 CDS YP_003755018.1 300022407 9386762 complement(918757..919158) 1 NC_014313.1 KEGG: sti:Sthe_0732 rhodanese domain protein; PFAM: rhodanese; SMART: rhodanese; rhodanese 919158 9386762 Hden_0880 Hyphomicrobium denitrificans ATCC 51888 rhodanese YP_003755018.1 918757 R 582899 CDS YP_003755019.1 300022408 9386763 919387..920337 1 NC_014313.1 PFAM: Rare lipoprotein A; KEGG: ccs:CCNA_01901 lipoprotein; Rare lipoprotein A 920337 9386763 Hden_0881 Hyphomicrobium denitrificans ATCC 51888 Rare lipoprotein A YP_003755019.1 919387 D 582899 CDS YP_003755020.1 300022409 9386764 complement(920389..921120) 1 NC_014313.1 KEGG: avi:Avi_0082 hypothetical protein; hypothetical protein 921120 9386764 Hden_0882 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755020.1 920389 R 582899 CDS YP_003755021.1 300022410 9386765 921432..922772 1 NC_014313.1 KEGG: pol:Bpro_5069 hypothetical protein; hypothetical protein 922772 9386765 Hden_0883 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755021.1 921432 D 582899 CDS YP_003755022.1 300022411 9386766 922876..923736 1 NC_014313.1 KEGG: rso:RS03125 hypothetical protein; hypothetical protein 923736 9386766 Hden_0884 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755022.1 922876 D 582899 CDS YP_003755023.1 300022412 9386767 complement(923784..924107) 1 NC_014313.1 KEGG: saq:Sare_0311 chaperonin GroEL; hypothetical protein 924107 9386767 Hden_0885 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755023.1 923784 R 582899 CDS YP_003755024.1 300022413 9386768 complement(924184..924402) 1 NC_014313.1 KEGG: reh:H16_B0392 extra-cytoplasmic solute receptor; hypothetical protein 924402 9386768 Hden_0886 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755024.1 924184 R 582899 CDS YP_003755025.1 300022414 9386769 924873..925415 1 NC_014313.1 KEGG: msl:Msil_1305 hypothetical protein; hypothetical protein 925415 9386769 Hden_0887 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755025.1 924873 D 582899 CDS YP_003755026.1 300022415 9386770 925662..926804 1 NC_014313.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: emi:Emin_0863 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 926804 9386770 Hden_0888 Hyphomicrobium denitrificans ATCC 51888 DegT/DnrJ/EryC1/StrS aminotransferase YP_003755026.1 925662 D 582899 CDS YP_003755027.1 300022416 9386771 926814..927371 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sus:acid_6945 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 927371 9386771 Hden_0889 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003755027.1 926814 D 582899 CDS YP_003755028.1 300022417 9386772 927556..928167 1 NC_014313.1 KEGG: rlg:Rleg_0769 cytochrome C; cytochrome C 928167 9386772 Hden_0890 Hyphomicrobium denitrificans ATCC 51888 cytochrome C YP_003755028.1 927556 D 582899 CDS YP_003755029.1 300022418 9386773 928352..929161 1 NC_014313.1 KEGG: cmi:CMM_0820 secreted protein; hypothetical protein 929161 9386773 Hden_0891 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755029.1 928352 D 582899 CDS YP_003755030.1 300022419 9386774 complement(929204..929500) 1 NC_014313.1 KEGG: mrd:Mrad2831_5487 hypothetical protein; hypothetical protein 929500 9386774 Hden_0892 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755030.1 929204 R 582899 CDS YP_003755031.1 300022420 9386775 complement(929657..930046) 1 NC_014313.1 KEGG: ncr:NCU02184 hypothetical protein; hypothetical protein 930046 9386775 Hden_0893 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755031.1 929657 R 582899 CDS YP_003755032.1 300022421 9386776 930387..933062 1 NC_014313.1 KEGG: mno:Mnod_7191 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: transketolase; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 933062 9386776 Hden_0894 Hyphomicrobium denitrificans ATCC 51888 2-oxo-acid dehydrogenase E1 subunit, homodimeric type YP_003755032.1 930387 D 582899 CDS YP_003755033.1 300022422 9386777 933079..934371 1 NC_014313.1 PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: met:M446_6300 dehydrogenase catalytic domain-containing protein; hypothetical protein 934371 9386777 Hden_0895 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755033.1 933079 D 582899 CDS YP_003755034.1 300022423 9386778 934386..935831 1 NC_014313.1 KEGG: bmj:BMULJ_02119 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 935831 9386778 Hden_0896 Hyphomicrobium denitrificans ATCC 51888 dihydrolipoamide dehydrogenase YP_003755034.1 934386 D 582899 CDS YP_003755035.1 300022424 9386779 complement(935914..936561) 1 NC_014313.1 KEGG: chl:Chy400_0215 autotransporter-associated beta strand repeat protein; autotransporter-associated beta strand repeat protein 936561 9386779 Hden_0897 Hyphomicrobium denitrificans ATCC 51888 autotransporter-associated beta strand repeat protein YP_003755035.1 935914 R 582899 CDS YP_003755036.1 300022425 9386780 936953..937153 1 NC_014313.1 KEGG: tgu:100218673 zinc finger CCCH-type containing 13; hypothetical protein 937153 9386780 Hden_0898 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755036.1 936953 D 582899 CDS YP_003755037.1 300022426 9386781 937377..938333 1 NC_014313.1 PFAM: patatin; KEGG: msl:Msil_0353 patatin; patatin 938333 9386781 Hden_0899 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003755037.1 937377 D 582899 CDS YP_003755038.1 300022427 9386782 complement(938977..940242) 1 NC_014313.1 KEGG: xau:Xaut_4187 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 940242 9386782 Hden_0900 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003755038.1 938977 R 582899 CDS YP_003755039.1 300022428 9386783 complement(940246..940635) 1 NC_014313.1 PFAM: YCII-related; KEGG: msl:Msil_1747 YCII-related; YCII-like protein 940635 9386783 Hden_0901 Hyphomicrobium denitrificans ATCC 51888 YCII-like protein YP_003755039.1 940246 R 582899 CDS YP_003755040.1 300022429 9386784 940862..941335 1 NC_014313.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002764 hypothetical protein; activator of Hsp90 ATPase 1 family protein 941335 9386784 Hden_0902 Hyphomicrobium denitrificans ATCC 51888 activator of Hsp90 ATPase 1 family protein YP_003755040.1 940862 D 582899 CDS YP_003755041.1 300022430 9386786 941874..942215 1 NC_014313.1 KEGG: nha:Nham_2144 hypothetical protein; hypothetical protein 942215 9386786 Hden_0903 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755041.1 941874 D 582899 CDS YP_003755042.1 300022431 9386787 942392..942706 1 NC_014313.1 KEGG: hypothetical protein; hypothetical protein 942706 9386787 Hden_0904 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755042.1 942392 D 582899 CDS YP_003755043.1 300022432 9386788 complement(942762..943619) 1 NC_014313.1 manually curated; TIGRFAM: RNA methyltransferase, TrmH family, group 3; KEGG: rpe:RPE_3682 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; TrmH family RNA methyltransferase 943619 9386788 Hden_0905 Hyphomicrobium denitrificans ATCC 51888 TrmH family RNA methyltransferase YP_003755043.1 942762 R 582899 CDS YP_003755044.1 300022433 9386790 944079..945335 1 NC_014313.1 PFAM: integrase family protein; KEGG: met:M446_2924 integrase family protein; integrase family protein 945335 9386790 Hden_0906 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003755044.1 944079 D 582899 CDS YP_003755045.1 300022434 9386791 complement(945499..948879) 1 NC_014313.1 KEGG: hla:Hlac_3437 helicase; PFAM: helicase; SNF2-related protein; SMART: DEAD-like helicase ; helicase; helicase 948879 9386791 Hden_0907 Hyphomicrobium denitrificans ATCC 51888 helicase YP_003755045.1 945499 R 582899 CDS YP_003755046.1 300022435 9386792 complement(948888..950483) 1 NC_014313.1 SMART: HNH nuclease; KEGG: dps:DP2015 hypothetical protein; HNH nuclease 950483 9386792 Hden_0908 Hyphomicrobium denitrificans ATCC 51888 HNH nuclease YP_003755046.1 948888 R 582899 CDS YP_003755047.1 300022436 9386793 complement(950505..954524) 1 NC_014313.1 KEGG: hla:Hlac_3438 hypothetical protein; hypothetical protein 954524 9386793 Hden_0909 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755047.1 950505 R 582899 CDS YP_003755048.1 300022437 9386794 complement(955068..955535) 1 NC_014313.1 KEGG: plt:Plut_0854 invertase/recombinase like protein; PFAM: Resolvase domain; SMART: Resolvase domain; resolvase 955535 9386794 Hden_0910 Hyphomicrobium denitrificans ATCC 51888 resolvase YP_003755048.1 955068 R 582899 CDS YP_003755049.1 300022438 9386797 957064..958590 1 NC_014313.1 KEGG: cak:Caul_1386 hypothetical protein; hypothetical protein 958590 9386797 Hden_0913 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755049.1 957064 D 582899 CDS YP_003755050.1 300022439 9386798 958979..959263 1 NC_014313.1 KEGG: sil:SPO2655 replicative DNA helicase; hypothetical protein 959263 9386798 Hden_0914 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755050.1 958979 D 582899 CDS YP_003755051.1 300022440 9386799 complement(959572..960228) 1 NC_014313.1 KEGG: bja:bll2759 response regulator FixJ; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 960228 9386799 Hden_0915 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003755051.1 959572 R 582899 CDS YP_003755052.1 300022441 9386800 complement(960225..961865) 1 NC_014313.1 KEGG: azl:AZL_c01170 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; MASE1 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 961865 9386800 Hden_0916 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755052.1 960225 R 582899 CDS YP_003755053.1 300022442 9386801 962202..965396 1 NC_014313.1 KEGG: gvi:gll0876 AcrB/AcrD/AcrF family multidrug efflux protein; manually curated; PFAM: acriflavin resistance protein; acriflavin resistance protein 965396 9386801 Hden_0917 Hyphomicrobium denitrificans ATCC 51888 acriflavin resistance protein YP_003755053.1 962202 D 582899 CDS YP_003755054.1 300022443 9386802 965383..966705 1 NC_014313.1 KEGG: bcj:BCAS0583 efflux system transport protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 966705 9386802 Hden_0918 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003755054.1 965383 D 582899 CDS YP_003755055.1 300022444 9386803 966705..968237 1 NC_014313.1 KEGG: esa:ESA_02519 hypothetical protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 968237 9386803 Hden_0919 Hyphomicrobium denitrificans ATCC 51888 NodT family RND efflux system outer membrane lipoprotein YP_003755055.1 966705 D 582899 CDS YP_003755056.1 300022445 9386804 complement(968280..969059) 1 NC_014313.1 KEGG: ana:alr1677 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein 969059 9386804 Hden_0920 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755056.1 968280 R 582899 CDS YP_003755057.1 300022446 9386805 969280..969384 1 NC_014313.1 hypothetical protein 969384 9386805 Hden_0921 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755057.1 969280 D 582899 CDS YP_003755058.1 300022447 9386806 complement(969822..970181) 1 NC_014313.1 KEGG: ret:RHE_PE00140 hypothetical protein; hypothetical protein 970181 9386806 Hden_0922 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755058.1 969822 R 582899 CDS YP_003755059.1 300022448 9386808 complement(970718..972037) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 972037 9386808 Hden_0924 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755059.1 970718 R 582899 CDS YP_003755060.1 300022449 9386809 972589..975330 1 NC_014313.1 KEGG: azc:AZC_1424 nitrite extrusion protein; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 975330 9386809 Hden_0925 Hyphomicrobium denitrificans ATCC 51888 nitrite transporter YP_003755060.1 972589 D 582899 CDS YP_003755061.1 300022450 9386810 975346..979089 1 NC_014313.1 KEGG: azc:AZC_1425 nitrate reductase subunit alpha protein; TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 979089 9386810 Hden_0926 Hyphomicrobium denitrificans ATCC 51888 nitrate reductase subunit alpha YP_003755061.1 975346 D 582899 CDS YP_003755062.1 300022451 9386811 979086..980612 1 NC_014313.1 TIGRFAM: nitrate reductase subunit beta; KEGG: azc:AZC_1426 nitrate reductase subunit beta protein; nitrate reductase subunit beta 980612 9386811 Hden_0927 Hyphomicrobium denitrificans ATCC 51888 nitrate reductase subunit beta YP_003755062.1 979086 D 582899 CDS YP_003755063.1 300022452 9386812 980612..981310 1 NC_014313.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: azc:AZC_1427 nitrate reductase subunit delta protein; PFAM: nitrate reductase subunit delta; nitrate reductase molybdenum cofactor assembly chaperone 981310 9386812 Hden_0928 Hyphomicrobium denitrificans ATCC 51888 nitrate reductase molybdenum cofactor assembly chaperone YP_003755063.1 980612 D 582899 CDS YP_003755064.1 300022453 9386813 981327..982076 1 NC_014313.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: azc:AZC_1428 nitrate reductase subunit gamma protein; PFAM: nitrate reductase subunit gamma; respiratory nitrate reductase subunit gamma 982076 9386813 Hden_0929 Hyphomicrobium denitrificans ATCC 51888 respiratory nitrate reductase subunit gamma YP_003755064.1 981327 D 582899 CDS YP_003755065.1 300022454 9386814 982080..982958 1 NC_014313.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azc:AZC_1429 peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 982958 9386814 Hden_0930 Hyphomicrobium denitrificans ATCC 51888 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003755065.1 982080 D 582899 CDS YP_003755066.1 300022455 9386815 982966..983247 1 NC_014313.1 KEGG: mrd:Mrad2831_2587 hypothetical protein; hypothetical protein 983247 9386815 Hden_0931 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755066.1 982966 D 582899 CDS YP_003755067.1 300022456 9386816 983381..983632 1 NC_014313.1 KEGG: sjp:SJA_C1-00680 hypothetical protein; hypothetical protein 983632 9386816 Hden_0932 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755067.1 983381 D 582899 CDS YP_003755068.1 300022457 9386817 983746..984000 1 NC_014313.1 KEGG: scb:SCAB_59641 hypothetical protein; hypothetical protein 984000 9386817 Hden_0933 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755068.1 983746 D 582899 CDS YP_003755069.1 300022458 9386818 complement(984045..984545) 1 NC_014313.1 PFAM: protein of unknown function DUF2165, transmembrane; KEGG: pfl:PFL_0497 hypothetical protein; hypothetical protein 984545 9386818 Hden_0934 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755069.1 984045 R 582899 CDS YP_003755070.1 300022459 9386819 984710..984961 1 NC_014313.1 KEGG: ddi:DDB_0191207 glycoprotein gp100; glycoprotein gp100 984961 9386819 Hden_0935 Hyphomicrobium denitrificans ATCC 51888 glycoprotein gp100 YP_003755070.1 984710 D 582899 CDS YP_003755071.1 300022460 9386820 complement(985001..988117) 1 NC_014313.1 PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_1521 acriflavin resistance protein; acriflavin resistance protein 988117 9386820 Hden_0936 Hyphomicrobium denitrificans ATCC 51888 acriflavin resistance protein YP_003755071.1 985001 R 582899 CDS YP_003755072.1 300022461 9386821 complement(988122..991289) 1 NC_014313.1 PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein; acriflavin resistance protein 991289 9386821 Hden_0937 Hyphomicrobium denitrificans ATCC 51888 acriflavin resistance protein YP_003755072.1 988122 R 582899 CDS YP_003755073.1 300022462 9386822 complement(991286..992677) 1 NC_014313.1 KEGG: ara:Arad_4549 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 992677 9386822 Hden_0938 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003755073.1 991286 R 582899 CDS YP_003755074.1 300022463 9386823 993132..995114 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bra:BRADO2968 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 995114 9386823 Hden_0939 Hyphomicrobium denitrificans ATCC 51888 diguanylate cyclase/phosphodiesterase YP_003755074.1 993132 D 582899 CDS YP_003755075.1 300022464 9386824 complement(995135..995647) 1 NC_014313.1 TIGRFAM: methionine-R-sulfoxide reductase; KEGG: dac:Daci_3070 methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 995647 9386824 Hden_0940 Hyphomicrobium denitrificans ATCC 51888 methionine-R-sulfoxide reductase YP_003755075.1 995135 R 582899 CDS YP_003755076.1 300022465 9386825 complement(995758..996480) 1 NC_014313.1 KEGG: pzu:PHZ_c1072 sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; sugar fermentation stimulation protein 996480 9386825 Hden_0941 Hyphomicrobium denitrificans ATCC 51888 sugar fermentation stimulation protein YP_003755076.1 995758 R 582899 CDS YP_003755077.1 300022466 9386826 996582..997313 1 NC_014313.1 PFAM: molybdopterin binding domain; KEGG: azc:AZC_1819 competence-damage associated protein; molybdopterin binding domain-containing protein 997313 9386826 Hden_0942 Hyphomicrobium denitrificans ATCC 51888 molybdopterin binding domain-containing protein YP_003755077.1 996582 D 582899 CDS YP_003755078.1 300022467 9386827 complement(997354..997974) 1 NC_014313.1 KEGG: ara:Arad_8639 sugar ABC transporter; hypothetical protein 997974 9386827 Hden_0943 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755078.1 997354 R 582899 CDS YP_003755079.1 300022468 9386828 998362..999015 1 NC_014313.1 KEGG: rci:RRC32 hypothetical protein; hypothetical protein 999015 9386828 Hden_0944 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755079.1 998362 D 582899 CDS YP_003755080.1 300022469 9386829 complement(999278..1000882) 1 NC_014313.1 PFAM: phosphate transporter; KEGG: bra:BRADO6359 inorganic phosphate transporter; phosphate transporter 1000882 9386829 Hden_0945 Hyphomicrobium denitrificans ATCC 51888 phosphate transporter YP_003755080.1 999278 R 582899 CDS YP_003755081.1 300022470 9386830 1001323..1001478 1 NC_014313.1 hypothetical protein 1001478 9386830 Hden_0946 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755081.1 1001323 D 582899 CDS YP_003755082.1 300022471 9386831 1001527..1001754 1 NC_014313.1 KEGG: rso:RSc2279 signal peptide protein; signal peptide protein 1001754 9386831 Hden_0947 Hyphomicrobium denitrificans ATCC 51888 signal peptide protein YP_003755082.1 1001527 D 582899 CDS YP_003755083.1 300022472 9386832 complement(1002028..1002333) 1 NC_014313.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: cpc:Cpar_1954 excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain-containing protein 1002333 9386832 Hden_0948 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC C subunit domain-containing protein YP_003755083.1 1002028 R 582899 CDS YP_003755084.1 300022473 9386833 complement(1002543..1003115) 1 NC_014313.1 manually curated; KEGG: hba:Hbal_2279 hypothetical protein; hypothetical protein 1003115 9386833 Hden_0949 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755084.1 1002543 R 582899 CDS YP_003755085.1 300022474 9386834 complement(1003180..1006941) 1 NC_014313.1 KEGG: mno:Mnod_6038 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase class II vitamin B12-dependent; ribonucleotide reductase large subunit; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 1006941 9386834 Hden_0950 Hyphomicrobium denitrificans ATCC 51888 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_003755085.1 1003180 R 582899 CDS YP_003755086.1 300022475 9386835 1007590..1007988 1 NC_014313.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: pla:Plav_3297 NADH:ubiquinone oxidoreductase 17.2 kD subunit; NADH:ubiquinone oxidoreductase 17.2 kD subunit 1007988 9386835 Hden_0951 Hyphomicrobium denitrificans ATCC 51888 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_003755086.1 1007590 D 582899 CDS YP_003755087.1 300022476 9386836 1007993..1008640 1 NC_014313.1 PFAM: protein of unknown function DUF2155; KEGG: mno:Mnod_6040 hypothetical protein; hypothetical protein 1008640 9386836 Hden_0952 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755087.1 1007993 D 582899 CDS YP_003755088.1 300022477 9386837 complement(1008656..1009702) 1 NC_014313.1 KEGG: pla:Plav_2897 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase 1009702 9386837 Hden_0953 Hyphomicrobium denitrificans ATCC 51888 porphobilinogen synthase YP_003755088.1 1008656 R 582899 CDS YP_003755089.1 300022478 9386838 complement(1009836..1011107) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: bid:Bind_0884 peptidoglycan binding domain-containing protein; ErfK/YbiS/YcfS/YnhG family protein 1011107 9386838 Hden_0954 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003755089.1 1009836 R 582899 CDS YP_003755090.1 300022479 9386839 complement(1011476..1011985) 1 NC_014313.1 KEGG: sme:SMc01768 transcription regulator protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 1011985 9386839 Hden_0955 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003755090.1 1011476 R 582899 CDS YP_003755091.1 300022480 9386840 complement(1012205..1013323) 1 NC_014313.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: met:M446_6833 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1013323 9386840 Hden_0956 Hyphomicrobium denitrificans ATCC 51888 enoyl-CoA hydratase/isomerase YP_003755091.1 1012205 R 582899 CDS YP_003755092.1 300022481 9386841 1013541..1014740 1 NC_014313.1 PFAM: Extensin family protein; KEGG: xau:Xaut_2474 extensin family protein; Extensin family protein 1014740 9386841 Hden_0957 Hyphomicrobium denitrificans ATCC 51888 Extensin family protein YP_003755092.1 1013541 D 582899 CDS YP_003755093.1 300022482 9386842 1014823..1014939 1 NC_014313.1 hypothetical protein 1014939 9386842 Hden_0958 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755093.1 1014823 D 582899 CDS YP_003755094.1 300022483 9386843 1015047..1016276 1 NC_014313.1 TIGRFAM: 5-aminolevulinic acid synthase; KEGG: msl:Msil_2030 5-aminolevulinate synthase; PFAM: aminotransferase class I and II; 5-aminolevulinic acid synthase 1016276 9386843 Hden_0959 Hyphomicrobium denitrificans ATCC 51888 5-aminolevulinic acid synthase YP_003755094.1 1015047 D 582899 CDS YP_003755095.1 300022484 9386844 1016604..1017908 1 NC_014313.1 KEGG: mch:Mchl_3495 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 1017908 9386844 Hden_0960 Hyphomicrobium denitrificans ATCC 51888 glycine hydroxymethyltransferase YP_003755095.1 1016604 D 582899 CDS YP_003755096.1 300022485 9386845 1018171..1018695 1 NC_014313.1 PFAM: ATP-cone domain protein; KEGG: mlo:mlr8403 transcriptional regulator NrdR; ATP-cone domain-containing protein 1018695 9386845 Hden_0961 Hyphomicrobium denitrificans ATCC 51888 ATP-cone domain-containing protein YP_003755096.1 1018171 D 582899 CDS YP_003755097.1 300022486 9386846 1018700..1019806 1 NC_014313.1 KEGG: xau:Xaut_4278 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1019806 9386846 Hden_0962 Hyphomicrobium denitrificans ATCC 51888 riboflavin biosynthesis protein RibD YP_003755097.1 1018700 D 582899 CDS YP_003755098.1 300022487 9386847 1019830..1020423 1 NC_014313.1 TIGRFAM: riboflavin synthase, subunit alpha; KEGG: azl:AZL_010170 riboflavin synthase alpha chain; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 1020423 9386847 Hden_0963 Hyphomicrobium denitrificans ATCC 51888 riboflavin synthase subunit alpha YP_003755098.1 1019830 D 582899 CDS YP_003755099.1 300022488 9386848 1020423..1021571 1 NC_014313.1 KEGG: pla:Plav_2912 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1021571 9386848 Hden_0964 Hyphomicrobium denitrificans ATCC 51888 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003755099.1 1020423 D 582899 CDS YP_003755100.1 300022489 9386849 1021579..1022082 1 NC_014313.1 KEGG: rce:RC1_1337 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 1022082 9386849 Hden_0965 Hyphomicrobium denitrificans ATCC 51888 6,7-dimethyl-8-ribityllumazine synthase YP_003755100.1 1021579 D 582899 CDS YP_003755101.1 300022490 9386850 1022079..1022591 1 NC_014313.1 KEGG: bja:bll5028 transcription antitermination protein NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 1022591 9386850 Hden_0966 Hyphomicrobium denitrificans ATCC 51888 NusB antitermination factor YP_003755101.1 1022079 D 582899 CDS YP_003755102.1 300022491 9386851 1022608..1023633 1 NC_014313.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: mea:Mex_1p3373 thiamin-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 1023633 9386851 Hden_0967 Hyphomicrobium denitrificans ATCC 51888 thiamine-monophosphate kinase YP_003755102.1 1022608 D 582899 CDS YP_003755103.1 300022492 9386852 1023870..1025228 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: msl:Msil_2112 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1025228 9386852 Hden_0968 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003755103.1 1023870 D 582899 CDS YP_003755104.1 300022493 9386853 complement(1025241..1025720) 1 NC_014313.1 KEGG: bja:bll3178 transcriptional regulatory protein; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator 1025720 9386853 Hden_0969 Hyphomicrobium denitrificans ATCC 51888 AsnC family transcriptional regulator YP_003755104.1 1025241 R 582899 CDS YP_003755105.1 300022494 9386854 1025862..1026986 1 NC_014313.1 TIGRFAM: alanine dehydrogenase; KEGG: sme:SMc01169 alanine dehydrogenase oxidoreductase protein; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 1026986 9386854 Hden_0970 Hyphomicrobium denitrificans ATCC 51888 alanine dehydrogenase YP_003755105.1 1025862 D 582899 CDS YP_003755106.1 300022495 9386855 complement(1027136..1028458) 1 NC_014313.1 KEGG: sme:SMc01534 omega amino acid--pyruvate transaminase; PFAM: aminotransferase class-III; beta-alanine--pyruvate transaminase 1028458 9386855 Hden_0971 Hyphomicrobium denitrificans ATCC 51888 beta-alanine--pyruvate transaminase YP_003755106.1 1027136 R 582899 CDS YP_003755107.1 300022496 9386856 complement(1028536..1029831) 1 NC_014313.1 KEGG: azl:AZL_c00280 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase 1029831 9386856 Hden_0972 Hyphomicrobium denitrificans ATCC 51888 4-aminobutyrate aminotransferase YP_003755107.1 1028536 R 582899 CDS YP_003755108.1 300022497 9386857 complement(1029868..1031322) 1 NC_014313.1 KEGG: cak:Caul_3954 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinic semialdehyde dehydrogenase 1031322 9386857 Hden_0973 Hyphomicrobium denitrificans ATCC 51888 succinic semialdehyde dehydrogenase YP_003755108.1 1029868 R 582899 CDS YP_003755109.1 300022498 9386858 complement(1031341..1032828) 1 NC_014313.1 PFAM: aldehyde dehydrogenase; KEGG: cak:Caul_3955 aldehyde dehydrogenase; aldehyde dehydrogenase 1032828 9386858 Hden_0974 Hyphomicrobium denitrificans ATCC 51888 aldehyde dehydrogenase YP_003755109.1 1031341 R 582899 CDS YP_003755110.1 300022499 9386859 complement(1032840..1034189) 1 NC_014313.1 PFAM: glutamine synthetase; KEGG: cak:Caul_3952 glutamine synthetase; glutamine synthetase 1034189 9386859 Hden_0975 Hyphomicrobium denitrificans ATCC 51888 glutamine synthetase YP_003755110.1 1032840 R 582899 CDS YP_003755111.1 300022500 9386860 complement(1034186..1034938) 1 NC_014313.1 KEGG: hna:Hneap_2381 gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: peptidase C26; gamma-glutamyl-gamma-aminobutyrate hydrolase 1034938 9386860 Hden_0976 Hyphomicrobium denitrificans ATCC 51888 gamma-glutamyl-gamma-aminobutyrate hydrolase YP_003755111.1 1034186 R 582899 CDS YP_003755112.1 300022501 9386861 complement(1034935..1036320) 1 NC_014313.1 PFAM: aminotransferase class-III; KEGG: mlo:mll1207 aminotransferase; class III aminotransferase 1036320 9386861 Hden_0977 Hyphomicrobium denitrificans ATCC 51888 class III aminotransferase YP_003755112.1 1034935 R 582899 CDS YP_003755113.1 300022502 9386862 1036658..1037311 1 NC_014313.1 PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bac:BamMC406_0585 TetR family transcriptional regulator; TetR family transcriptional regulator 1037311 9386862 Hden_0978 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003755113.1 1036658 D 582899 CDS YP_003755114.1 300022503 9386863 complement(1037401..1038642) 1 NC_014313.1 PFAM: glucose sorbosone dehydrogenase; KEGG: dba:Dbac_1142 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 1038642 9386863 Hden_0979 Hyphomicrobium denitrificans ATCC 51888 glucose sorbosone dehydrogenase YP_003755114.1 1037401 R 582899 CDS YP_003755115.1 300022504 9386864 complement(1038963..1039199) 1 NC_014313.1 KEGG: nmc:NMC0998 hypothetical protein; hypothetical protein 1039199 9386864 Hden_0980 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755115.1 1038963 R 582899 CDS YP_003755116.1 300022505 9386865 complement(1039397..1039741) 1 NC_014313.1 KEGG: msl:Msil_3909 hypothetical protein; hypothetical protein 1039741 9386865 Hden_0981 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755116.1 1039397 R 582899 CDS YP_003755117.1 300022506 9386866 complement(1039743..1040651) 1 NC_014313.1 KEGG: bbt:BBta_7804 heat shock protein-DnaJ-like protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 1040651 9386866 Hden_0982 Hyphomicrobium denitrificans ATCC 51888 chaperone DnaJ domain-containing protein YP_003755117.1 1039743 R 582899 CDS YP_003755118.1 300022507 9386867 1040841..1041263 1 NC_014313.1 KEGG: dre:405822 phosphoglucomutase 2; hypothetical protein 1041263 9386867 Hden_0983 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755118.1 1040841 D 582899 CDS YP_003755119.1 300022508 9386868 complement(1041302..1041610) 1 NC_014313.1 KEGG: rpc:RPC_3683 hypothetical protein; hypothetical protein 1041610 9386868 Hden_0984 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755119.1 1041302 R 582899 CDS YP_003755120.1 300022509 9386869 1041985..1042440 1 NC_014313.1 KEGG: bxe:Bxe_B0776 membrane glycoprotein; hypothetical protein 1042440 9386869 Hden_0985 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755120.1 1041985 D 582899 CDS YP_003755121.1 300022510 9386870 complement(1042778..1043077) 1 NC_014313.1 KEGG: aga:AgaP_AGAP011790 CLIP-domain serine protease subfamily A (AGAP011790-PB); hypothetical protein 1043077 9386870 Hden_0986 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755121.1 1042778 R 582899 CDS YP_003755122.1 300022511 9386871 1043262..1043525 1 NC_014313.1 hypothetical protein 1043525 9386871 Hden_0987 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755122.1 1043262 D 582899 CDS YP_003755123.1 300022512 9386872 complement(1043576..1044652) 1 NC_014313.1 KEGG: bja:bll0419 hypothetical protein; hypothetical protein 1044652 9386872 Hden_0988 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755123.1 1043576 R 582899 CDS YP_003755124.1 300022513 9386873 complement(1044805..1045335) 1 NC_014313.1 TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; KEGG: bmj:BMULJ_05584 isopentenyl-diphosphate delta-isomerase; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase, type 1 1045335 9386873 Hden_0989 Hyphomicrobium denitrificans ATCC 51888 isopentenyl-diphosphate delta-isomerase, type 1 YP_003755124.1 1044805 R 582899 CDS YP_003755125.1 300022514 9386874 complement(1045485..1046021) 1 NC_014313.1 KEGG: pla:Plav_0784 hypothetical protein; hypothetical protein 1046021 9386874 Hden_0990 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755125.1 1045485 R 582899 CDS YP_003755126.1 300022515 9386875 1046271..1046639 1 NC_014313.1 KEGG: sit:TM1040_0672 hypothetical protein; hypothetical protein 1046639 9386875 Hden_0991 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755126.1 1046271 D 582899 CDS YP_003755127.1 300022516 9386876 1046729..1049209 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_1025 TonB-dependent receptor; TonB-dependent receptor 1049209 9386876 Hden_0992 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003755127.1 1046729 D 582899 CDS YP_003755128.1 300022517 9386877 1049213..1050439 1 NC_014313.1 KEGG: nha:Nham_1024 BNR repeat-containing glycosyl hydrolase; BNR repeat-containing glycosyl hydrolase 1050439 9386877 Hden_0993 Hyphomicrobium denitrificans ATCC 51888 BNR repeat-containing glycosyl hydrolase YP_003755128.1 1049213 D 582899 CDS YP_003755129.1 300022518 9386878 1050436..1050933 1 NC_014313.1 KEGG: nha:Nham_1023 signal peptide protein; signal peptide protein 1050933 9386878 Hden_0994 Hyphomicrobium denitrificans ATCC 51888 signal peptide protein YP_003755129.1 1050436 D 582899 CDS YP_003755130.1 300022519 9386879 1051068..1051331 1 NC_014313.1 PFAM: transglycosylase; KEGG: oan:Oant_1065 transglycosylase; transglycosylase 1051331 9386879 Hden_0995 Hyphomicrobium denitrificans ATCC 51888 transglycosylase YP_003755130.1 1051068 D 582899 CDS YP_003755131.1 300022520 9386880 complement(1051449..1052429) 1 NC_014313.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: mno:Mnod_8517 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD 1052429 9386880 Hden_0996 Hyphomicrobium denitrificans ATCC 51888 2-nitropropane dioxygenase NPD YP_003755131.1 1051449 R 582899 CDS YP_003755132.1 300022521 9386881 complement(1052456..1052893) 1 NC_014313.1 KEGG: hha:Hhal_2401 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 1052893 9386881 Hden_0997 Hyphomicrobium denitrificans ATCC 51888 BadM/Rrf2 family transcriptional regulator YP_003755132.1 1052456 R 582899 CDS YP_003755133.1 300022522 9386882 1052989..1053399 1 NC_014313.1 KEGG: pzu:PHZ_c2662 truncated hemoglobin-like protein; truncated hemoglobin-like protein 1053399 9386882 Hden_0998 Hyphomicrobium denitrificans ATCC 51888 truncated hemoglobin-like protein YP_003755133.1 1052989 D 582899 CDS YP_003755134.1 300022523 9386883 complement(1053430..1054287) 1 NC_014313.1 KEGG: sro:Sros_3921 multidrug efflux protein NorA; hypothetical protein 1054287 9386883 Hden_0999 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755134.1 1053430 R 582899 CDS YP_003755135.1 300022524 9386885 complement(1054621..1055433) 1 NC_014313.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1777 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ 1055433 9386885 Hden_1000 Hyphomicrobium denitrificans ATCC 51888 sulfur oxidation protein SoxZ YP_003755135.1 1054621 R 582899 CDS YP_003755136.1 300022525 9386886 complement(1055675..1056007) 1 NC_014313.1 PFAM: protein of unknown function DUF583; KEGG: rru:Rru_A1867 hypothetical protein; hypothetical protein 1056007 9386886 Hden_1001 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755136.1 1055675 R 582899 CDS YP_003755137.1 300022526 9386887 complement(1056155..1057762) 1 NC_014313.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: mno:Mnod_1830 periplasmic glucan biosynthesis protein MdoG; periplasmic glucan biosynthesis protein MdoG 1057762 9386887 Hden_1002 Hyphomicrobium denitrificans ATCC 51888 periplasmic glucan biosynthesis protein MdoG YP_003755137.1 1056155 R 582899 CDS YP_003755138.1 300022527 9386888 1058043..1058426 1 NC_014313.1 PFAM: protein of unknown function DUF74; KEGG: cak:Caul_3365 hypothetical protein; hypothetical protein 1058426 9386888 Hden_1003 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755138.1 1058043 D 582899 CDS YP_003755139.1 300022528 9386890 1058711..1058941 1 NC_014313.1 KEGG: pla:Plav_2723 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE 1058941 9386890 Hden_1004 Hyphomicrobium denitrificans ATCC 51888 preprotein translocase subunit SecE YP_003755139.1 1058711 D 582899 CDS YP_003755140.1 300022529 9386891 1058992..1059567 1 NC_014313.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; KEGG: rpd:RPD_3202 transcription antitermination protein NusG; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor 1059567 9386891 Hden_1005 Hyphomicrobium denitrificans ATCC 51888 NusG antitermination factor YP_003755140.1 1058992 D 582899 CDS YP_003755141.1 300022530 9386892 1059779..1060225 1 NC_014313.1 TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11-like; KEGG: pla:Plav_2725 ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 1060225 9386892 Hden_1006 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L11 YP_003755141.1 1059779 D 582899 CDS YP_003755142.1 300022531 9386893 1060230..1060979 1 NC_014313.1 KEGG: rhi:NGR_c11790 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 1060979 9386893 Hden_1007 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L1 YP_003755142.1 1060230 D 582899 CDS YP_003755143.1 300022532 9386894 1061308..1061826 1 NC_014313.1 PFAM: ribosomal protein L10; KEGG: bbt:BBta_5083 50S ribosomal protein L10; 50S ribosomal protein L10 1061826 9386894 Hden_1008 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L10 YP_003755143.1 1061308 D 582899 CDS YP_003755144.1 300022533 9386895 1061939..1062316 1 NC_014313.1 KEGG: gdj:Gdia_2959 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; 50S ribosomal protein L7/L12 1062316 9386895 Hden_1009 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L7/L12 YP_003755144.1 1061939 D 582899 CDS YP_003755145.1 300022534 9386896 1062575..1066726 1 NC_014313.1 KEGG: bra:BRADO3054 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 7; RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta, external 1 domain; DNA-directed RNA polymerase subunit beta 1066726 9386896 Hden_1010 Hyphomicrobium denitrificans ATCC 51888 DNA-directed RNA polymerase subunit beta YP_003755145.1 1062575 D 582899 CDS YP_003755146.1 300022535 9386897 1066894..1071114 1 NC_014313.1 TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; KEGG: pla:Plav_2730 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1071114 9386897 Hden_1011 Hyphomicrobium denitrificans ATCC 51888 DNA-directed RNA polymerase subunit beta' YP_003755146.1 1066894 D 582899 CDS YP_003755147.1 300022536 9386898 1071598..1071969 1 NC_014313.1 KEGG: bid:Bind_1349 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 1071969 9386898 Hden_1012 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S12 YP_003755147.1 1071598 D 582899 CDS YP_003755148.1 300022537 9386899 1072038..1072508 1 NC_014313.1 KEGG: avi:Avi_1834 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 1072508 9386899 Hden_1013 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S7 YP_003755148.1 1072038 D 582899 CDS YP_003755149.1 300022538 9386900 1072540..1074630 1 NC_014313.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: azc:AZC_2557 elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain protein; translation elongation factor G 1074630 9386900 Hden_1014 Hyphomicrobium denitrificans ATCC 51888 translation elongation factor G YP_003755149.1 1072540 D 582899 CDS YP_003755150.1 300022539 9386901 1074696..1075904 1 NC_014313.1 KEGG: gau:GAU_0871 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; translation elongation factor Tu 1075904 9386901 Hden_1015 Hyphomicrobium denitrificans ATCC 51888 translation elongation factor Tu YP_003755150.1 1074696 D 582899 CDS YP_003755151.1 300022540 9386902 1075962..1076270 1 NC_014313.1 KEGG: rpc:RPC_3449 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 1076270 9386902 Hden_1016 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S10 YP_003755151.1 1075962 D 582899 CDS YP_003755152.1 300022541 9386903 1076335..1077036 1 NC_014313.1 KEGG: nha:Nham_1545 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 1077036 9386903 Hden_1017 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L3 YP_003755152.1 1076335 D 582899 CDS YP_003755153.1 300022542 9386904 1077036..1077653 1 NC_014313.1 PFAM: ribosomal protein L4/L1e; KEGG: pla:Plav_2737 ribosomal protein L4/L1e; 50S ribosomal protein L4/L1e 1077653 9386904 Hden_1018 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L4/L1e YP_003755153.1 1077036 D 582899 CDS YP_003755154.1 300022543 9386905 1077650..1077946 1 NC_014313.1 PFAM: ribosomal protein L25/L23; KEGG: pla:Plav_2738 ribosomal protein L25/L23; 50S ribosomal protein L25/L23 1077946 9386905 Hden_1019 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L25/L23 YP_003755154.1 1077650 D 582899 CDS YP_003755155.1 300022544 9386906 1077959..1078783 1 NC_014313.1 KEGG: mmr:Mmar10_1792 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 1078783 9386906 Hden_1020 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L2 YP_003755155.1 1077959 D 582899 CDS YP_003755156.1 300022545 9386907 1078808..1079086 1 NC_014313.1 KEGG: bqu:BQ08190 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 1079086 9386907 Hden_1021 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S19 YP_003755156.1 1078808 D 582899 CDS YP_003755157.1 300022546 9386908 1079086..1079532 1 NC_014313.1 KEGG: mpo:Mpop_2128 ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 1079532 9386908 Hden_1022 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L22 YP_003755157.1 1079086 D 582899 CDS YP_003755158.1 300022547 9386909 1079534..1080361 1 NC_014313.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; ribosomal protein S3 domain; KH type 2 domain protein; KEGG: pla:Plav_2742 ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 1080361 9386909 Hden_1023 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S3 YP_003755158.1 1079534 D 582899 CDS YP_003755159.1 300022548 9386910 1080384..1080794 1 NC_014313.1 KEGG: rpt:Rpal_3660 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L10e/L16; 50S ribosomal protein L16 1080794 9386910 Hden_1024 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L16 YP_003755159.1 1080384 D 582899 CDS YP_003755160.1 300022549 9386911 1080811..1081017 1 NC_014313.1 KEGG: bid:Bind_1362 ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 1081017 9386911 Hden_1025 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L29 YP_003755160.1 1080811 D 582899 CDS YP_003755161.1 300022550 9386912 1081032..1081262 1 NC_014313.1 KEGG: bbk:BARBAKC583_0707 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 1081262 9386912 Hden_1026 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S17 YP_003755161.1 1081032 D 582899 CDS YP_003755162.1 300022551 9386913 1081406..1081774 1 NC_014313.1 KEGG: pla:Plav_2746 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 1081774 9386913 Hden_1027 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L14 YP_003755162.1 1081406 D 582899 CDS YP_003755163.1 300022552 9386914 1081774..1082100 1 NC_014313.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: azc:AZC_2543 ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 1082100 9386914 Hden_1028 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L24 YP_003755163.1 1081774 D 582899 CDS YP_003755164.1 300022553 9386915 1082104..1082784 1 NC_014313.1 PFAM: ribosomal protein L5; KEGG: msl:Msil_0568 ribosomal protein L5; 50S ribosomal protein L5 1082784 9386915 Hden_1029 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L5 YP_003755164.1 1082104 D 582899 CDS YP_003755165.1 300022554 9386916 1082829..1083134 1 NC_014313.1 PFAM: ribosomal protein S14; KEGG: rce:RC1_0724 ribosomal protein S14; 30S ribosomal protein S14 1083134 9386916 Hden_1030 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S14 YP_003755165.1 1082829 D 582899 CDS YP_003755166.1 300022555 9386917 1083147..1083545 1 NC_014313.1 PFAM: ribosomal protein S8; KEGG: cak:Caul_1628 ribosomal protein S8; 30S ribosomal protein S8 1083545 9386917 Hden_1031 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S8 YP_003755166.1 1083147 D 582899 CDS YP_003755167.1 300022556 9386918 1083593..1084135 1 NC_014313.1 KEGG: mpo:Mpop_2149 ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 1084135 9386918 Hden_1032 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L6 YP_003755167.1 1083593 D 582899 CDS YP_003755168.1 300022557 9386919 1084147..1084509 1 NC_014313.1 KEGG: oan:Oant_1972 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 1084509 9386919 Hden_1033 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L18 YP_003755168.1 1084147 D 582899 CDS YP_003755169.1 300022558 9386920 1084531..1085106 1 NC_014313.1 KEGG: nwi:Nwi_1381 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; 30S ribosomal protein S5 1085106 9386920 Hden_1034 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S5 YP_003755169.1 1084531 D 582899 CDS YP_003755170.1 300022559 9386921 1085162..1085353 1 NC_014313.1 KEGG: atu:Atu8065 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 1085353 9386921 Hden_1035 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L30 YP_003755170.1 1085162 D 582899 CDS YP_003755171.1 300022560 9386922 1085359..1085910 1 NC_014313.1 KEGG: rpt:Rpal_3648 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; 50S ribosomal protein L15 1085910 9386922 Hden_1036 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L15 YP_003755171.1 1085359 D 582899 CDS YP_003755172.1 300022561 9386923 1086051..1087394 1 NC_014313.1 KEGG: xau:Xaut_4778 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; preprotein translocase subunit SecY 1087394 9386923 Hden_1037 Hyphomicrobium denitrificans ATCC 51888 preprotein translocase subunit SecY YP_003755172.1 1086051 D 582899 CDS YP_003755173.1 300022562 9386924 1087391..1087984 1 NC_014313.1 KEGG: azc:AZC_2533 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase 1087984 9386924 Hden_1038 Hyphomicrobium denitrificans ATCC 51888 adenylate kinase YP_003755173.1 1087391 D 582899 CDS YP_003755174.1 300022563 9386925 1088224..1088601 1 NC_014313.1 KEGG: mpo:Mpop_2142 ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 1088601 9386925 Hden_1039 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S13 YP_003755174.1 1088224 D 582899 CDS YP_003755175.1 300022564 9386926 1088691..1089092 1 NC_014313.1 KEGG: azl:AZL_018770 small subunit ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 1089092 9386926 Hden_1040 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S11 YP_003755175.1 1088691 D 582899 CDS YP_003755176.1 300022565 9386927 1089197..1090219 1 NC_014313.1 TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: pla:Plav_2760 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1090219 9386927 Hden_1041 Hyphomicrobium denitrificans ATCC 51888 DNA-directed RNA polymerase subunit alpha YP_003755176.1 1089197 D 582899 CDS YP_003755177.1 300022566 9386928 1090338..1090766 1 NC_014313.1 KEGG: hne:HNE_2826 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 1090766 9386928 Hden_1042 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L17 YP_003755177.1 1090338 D 582899 CDS YP_003755178.1 300022567 9386929 1090925..1091953 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: hne:HNE_3360 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1091953 9386929 Hden_1043 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003755178.1 1090925 D 582899 CDS YP_003755179.1 300022568 9386930 1092051..1093481 1 NC_014313.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: pla:Plav_2762 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1093481 9386930 Hden_1044 Hyphomicrobium denitrificans ATCC 51888 protease Do YP_003755179.1 1092051 D 582899 CDS YP_003755180.1 300022569 9386931 complement(1093503..1094303) 1 NC_014313.1 PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein 1094303 9386931 Hden_1045 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755180.1 1093503 R 582899 CDS YP_003755181.1 300022570 9386932 complement(1094436..1095968) 1 NC_014313.1 TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: gbe:GbCGDNIH1_2160 adenylylsulfate kinase; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 1095968 9386932 Hden_1046 Hyphomicrobium denitrificans ATCC 51888 sulfate adenylyltransferase, large subunit YP_003755181.1 1094436 R 582899 CDS YP_003755182.1 300022571 9386933 complement(1095968..1096873) 1 NC_014313.1 KEGG: mlo:mlr7575 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; sulfate adenylyltransferase, small subunit 1096873 9386933 Hden_1047 Hyphomicrobium denitrificans ATCC 51888 sulfate adenylyltransferase, small subunit YP_003755182.1 1095968 R 582899 CDS YP_003755183.1 300022572 9386934 complement(1096870..1097679) 1 NC_014313.1 TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; KEGG: mch:Mchl_2510 adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase, thioredoxin dependent 1097679 9386934 Hden_1048 Hyphomicrobium denitrificans ATCC 51888 adenylylsulfate reductase, thioredoxin dependent YP_003755183.1 1096870 R 582899 CDS YP_003755184.1 300022573 9386935 complement(1097844..1099070) 1 NC_014313.1 PFAM: HI0933 family protein; KEGG: rpc:RPC_3087 HI0933-like protein; hypothetical protein 1099070 9386935 Hden_1049 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755184.1 1097844 R 582899 CDS YP_003755185.1 300022574 9386936 complement(1099104..1099364) 1 NC_014313.1 hypothetical protein 1099364 9386936 Hden_1050 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755185.1 1099104 R 582899 CDS YP_003755186.1 300022575 9386937 1099810..1100409 1 NC_014313.1 manually curated; PFAM: Cold-shock protein DNA-binding; KEGG: rpc:RPC_2791 cold-shock DNA-binding domain-containing protein; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1100409 9386937 Hden_1051 Hyphomicrobium denitrificans ATCC 51888 cold-shock DNA-binding domain-containing protein YP_003755186.1 1099810 D 582899 CDS YP_003755187.1 300022576 9386938 1100421..1100948 1 NC_014313.1 PFAM: protein of unknown function DUF192; KEGG: rpt:Rpal_2802 protein of unknown function DUF192; hypothetical protein 1100948 9386938 Hden_1052 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755187.1 1100421 D 582899 CDS YP_003755188.1 300022577 9386939 complement(1100984..1102045) 1 NC_014313.1 KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA; hypothetical protein 1102045 9386939 Hden_1053 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755188.1 1100984 R 582899 CDS YP_003755189.1 300022578 9386941 complement(1102481..1102837) 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: rpb:RPB_1376 cytochrome c, class I; cytochrome C class I 1102837 9386941 Hden_1054 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003755189.1 1102481 R 582899 CDS YP_003755190.1 300022579 9386942 1102933..1103337 1 NC_014313.1 KEGG: bra:BRADO5328 cytochrome C-552 precursor (cytochrome C552); hypothetical protein 1103337 9386942 Hden_1055 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755190.1 1102933 D 582899 CDS YP_003755191.1 300022580 9386943 1103584..1104597 1 NC_014313.1 KEGG: rsk:RSKD131_1070 hypothetical protein; hypothetical protein 1104597 9386943 Hden_1056 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755191.1 1103584 D 582899 CDS YP_003755192.1 300022581 9386944 1104833..1105912 1 NC_014313.1 KEGG: rsk:RSKD131_1067 hypothetical protein; hypothetical protein 1105912 9386944 Hden_1057 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755192.1 1104833 D 582899 CDS YP_003755193.1 300022582 9386946 1106254..1107894 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: msl:Msil_0111 major facilitator superfamily MFS_1; major facilitator superfamily protein 1107894 9386946 Hden_1058 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003755193.1 1106254 D 582899 CDS YP_003755194.1 300022583 9386947 complement(1107992..1108297) 1 NC_014313.1 PFAM: ETC complex I subunit conserved region; KEGG: pla:Plav_2976 ETC complex I subunit region; ETC complex I subunit conserved region 1108297 9386947 Hden_1059 Hyphomicrobium denitrificans ATCC 51888 ETC complex I subunit conserved region YP_003755194.1 1107992 R 582899 CDS YP_003755195.1 300022584 9386948 1108592..1109188 1 NC_014313.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: reh:H16_B1845 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 1109188 9386948 Hden_1060 Hyphomicrobium denitrificans ATCC 51888 uracil-DNA glycosylase superfamily protein YP_003755195.1 1108592 D 582899 CDS YP_003755196.1 300022585 9386949 1109217..1109588 1 NC_014313.1 PFAM: protein of unknown function DUF488; KEGG: bmr:BMI_II475 hypothetical protein; hypothetical protein 1109588 9386949 Hden_1061 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755196.1 1109217 D 582899 CDS YP_003755197.1 300022586 9386950 complement(1109574..1110416) 1 NC_014313.1 KEGG: pna:Pnap_2627 ethanolamine ammonia-lyase small subunit; PFAM: ethanolamine ammonia-lyase light chain; ethanolamine ammonia-lyase 1110416 9386950 Hden_1062 Hyphomicrobium denitrificans ATCC 51888 ethanolamine ammonia-lyase YP_003755197.1 1109574 R 582899 CDS YP_003755198.1 300022587 9386951 complement(1110431..1111819) 1 NC_014313.1 KEGG: pst:PSPTO_0727 ethanolamine ammonia-lyase, heavy subunit; PFAM: ethanolamine ammonia lyase large subunit; ethanolamine ammonia-lyase 1111819 9386951 Hden_1063 Hyphomicrobium denitrificans ATCC 51888 ethanolamine ammonia-lyase YP_003755198.1 1110431 R 582899 CDS YP_003755199.1 300022588 9386952 complement(1111852..1113261) 1 NC_014313.1 KEGG: pen:PSEEN0633 transporter; TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; ethanolamine transporter 1113261 9386952 Hden_1064 Hyphomicrobium denitrificans ATCC 51888 ethanolamine transporter YP_003755199.1 1111852 R 582899 CDS YP_003755200.1 300022589 9386953 1113532..1114545 1 NC_014313.1 KEGG: mei:Msip34_0961 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 1114545 9386953 Hden_1065 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003755200.1 1113532 D 582899 CDS YP_003755201.1 300022590 9386954 1114742..1117003 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; hypothetical protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: rfr:Rfer_4387 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1117003 9386954 Hden_1066 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_003755201.1 1114742 D 582899 CDS YP_003755202.1 300022591 9386955 1117168..1117362 1 NC_014313.1 hypothetical protein 1117362 9386955 Hden_1067 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755202.1 1117168 D 582899 CDS YP_003755203.1 300022592 9386956 1117486..1118385 1 NC_014313.1 KEGG: sjp:SJA_C1-12890 Ku protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; Ku protein 1118385 9386956 Hden_1068 Hyphomicrobium denitrificans ATCC 51888 Ku protein YP_003755203.1 1117486 D 582899 CDS YP_003755204.1 300022593 9386957 complement(1118404..1119474) 1 NC_014313.1 manually curated; TIGRFAM: DNA polymerase LigD, ligase domain protein; KEGG: azc:AZC_1006 ATP-dependent DNA ligase; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA polymerase LigD, ligase domain-containing protein 1119474 9386957 Hden_1069 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase LigD, ligase domain-containing protein YP_003755204.1 1118404 R 582899 CDS YP_003755205.1 300022594 9386958 complement(1119483..1121171) 1 NC_014313.1 KEGG: pzu:PHZ_p0051 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; PFAM: DNA primase small subunit; DNA polymerase LigD, polymerase domain-containing protein 1121171 9386958 Hden_1070 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase LigD, polymerase domain-containing protein YP_003755205.1 1119483 R 582899 CDS YP_003755206.1 300022595 9386959 complement(1121377..1121712) 1 NC_014313.1 KEGG: ngk:NGK_0409 FolC protein; hypothetical protein 1121712 9386959 Hden_1071 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755206.1 1121377 R 582899 CDS YP_003755207.1 300022596 9386960 1121785..1122015 1 NC_014313.1 KEGG: mlo:msl1799 hypothetical protein; hypothetical protein 1122015 9386960 Hden_1072 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755207.1 1121785 D 582899 CDS YP_003755208.1 300022597 9386961 complement(1122031..1123323) 1 NC_014313.1 PFAM: natural resistance-associated macrophage protein; KEGG: bbt:BBta_7276 manganese transporter; natural resistance-associated macrophage protein 1123323 9386961 Hden_1073 Hyphomicrobium denitrificans ATCC 51888 natural resistance-associated macrophage protein YP_003755208.1 1122031 R 582899 CDS YP_003755209.1 300022598 9386962 1123488..1124036 1 NC_014313.1 KEGG: rpe:RPE_2634 hypothetical protein; hypothetical protein 1124036 9386962 Hden_1074 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755209.1 1123488 D 582899 CDS YP_003755210.1 300022599 9386963 complement(1124120..1124446) 1 NC_014313.1 KEGG: lrl:LC705_01953 predicted ORF; hypothetical protein 1124446 9386963 Hden_1075 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755210.1 1124120 R 582899 CDS YP_003755211.1 300022600 9386964 1124626..1124922 1 NC_014313.1 KEGG: mno:Mnod_2210 ETC complex I subunit conserved region; hypothetical protein 1124922 9386964 Hden_1076 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755211.1 1124626 D 582899 CDS YP_003755212.1 300022601 9386965 complement(1125008..1125373) 1 NC_014313.1 PFAM: PRC-barrel domain protein; KEGG: bja:blr2603 hypothetical protein; PRC-barrel domain-containing protein 1125373 9386965 Hden_1077 Hyphomicrobium denitrificans ATCC 51888 PRC-barrel domain-containing protein YP_003755212.1 1125008 R 582899 CDS YP_003755213.1 300022602 9386966 complement(1125457..1125909) 1 NC_014313.1 PFAM: PRC-barrel domain protein; KEGG: xau:Xaut_2027 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein 1125909 9386966 Hden_1078 Hyphomicrobium denitrificans ATCC 51888 PRC-barrel domain-containing protein YP_003755213.1 1125457 R 582899 CDS YP_003755214.1 300022603 9386967 1126131..1127117 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5297 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1127117 9386967 Hden_1079 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003755214.1 1126131 D 582899 CDS YP_003755215.1 300022604 9386968 1127497..1127628 1 NC_014313.1 hypothetical protein 1127628 9386968 Hden_1080 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755215.1 1127497 D 582899 CDS YP_003755216.1 300022605 9386970 1128054..1129847 1 NC_014313.1 KEGG: azc:AZC_0439 hypothetical protein; manually curated; PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein 1129847 9386970 Hden_1081 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003755216.1 1128054 D 582899 CDS YP_003755217.1 300022606 9386971 complement(1129860..1131044) 1 NC_014313.1 KEGG: mrd:Mrad2831_2165 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase 1131044 9386971 Hden_1082 Hyphomicrobium denitrificans ATCC 51888 cystathionine beta-lyase YP_003755217.1 1129860 R 582899 CDS YP_003755218.1 300022607 9386972 1131245..1132279 1 NC_014313.1 KEGG: msl:Msil_1705 cationic amino acid ABC transporter periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1132279 9386972 Hden_1083 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003755218.1 1131245 D 582899 CDS YP_003755219.1 300022608 9386973 1132333..1132866 1 NC_014313.1 KEGG: amr:AM1_6086 TPR repeat-containing transcriptional regulator LuxR; hypothetical protein 1132866 9386973 Hden_1084 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755219.1 1132333 D 582899 CDS YP_003755220.1 300022609 9386974 complement(1132853..1133914) 1 NC_014313.1 KEGG: rhi:NGR_c12630 hypothetical protein; hypothetical protein 1133914 9386974 Hden_1085 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755220.1 1132853 R 582899 CDS YP_003755221.1 300022610 9386975 complement(1133986..1135902) 1 NC_014313.1 KEGG: mlo:mlr6511 hypothetical protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A 1135902 9386975 Hden_1086 Hyphomicrobium denitrificans ATCC 51888 von Willebrand factor A YP_003755221.1 1133986 R 582899 CDS YP_003755222.1 300022611 9386976 1135995..1136570 1 NC_014313.1 PFAM: nitroreductase; KEGG: rpd:RPD_3262 nitroreductase; nitroreductase 1136570 9386976 Hden_1087 Hyphomicrobium denitrificans ATCC 51888 nitroreductase YP_003755222.1 1135995 D 582899 CDS YP_003755223.1 300022612 9386977 complement(1136978..1137760) 1 NC_014313.1 PFAM: ATP-NAD/AcoX kinase; KEGG: pla:Plav_2701 NAD(+) kinase; ATP-NAD/AcoX kinase 1137760 9386977 Hden_1088 Hyphomicrobium denitrificans ATCC 51888 ATP-NAD/AcoX kinase YP_003755223.1 1136978 R 582899 CDS YP_003755224.1 300022613 9386978 1137884..1138189 1 NC_014313.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: mdi:METDI0519 copper binding protein, copper sensitivity; CutA1 divalent ion tolerance protein 1138189 9386978 Hden_1089 Hyphomicrobium denitrificans ATCC 51888 CutA1 divalent ion tolerance protein YP_003755224.1 1137884 D 582899 CDS YP_003755225.1 300022614 9386979 complement(1138215..1139330) 1 NC_014313.1 KEGG: bra:BRADO2751 hypothetical protein; hypothetical protein 1139330 9386979 Hden_1090 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755225.1 1138215 R 582899 CDS YP_003755226.1 300022615 9386980 1140144..1141472 1 NC_014313.1 KEGG: bbt:BBta_0489 hypothetical protein; hypothetical protein 1141472 9386980 Hden_1091 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755226.1 1140144 D 582899 CDS YP_003755227.1 300022616 9386981 complement(1141621..1143789) 1 NC_014313.1 KEGG: pla:Plav_0844 oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; oligopeptidase B 1143789 9386981 Hden_1092 Hyphomicrobium denitrificans ATCC 51888 oligopeptidase B YP_003755227.1 1141621 R 582899 CDS YP_003755228.1 300022617 9386982 1144130..1144531 1 NC_014313.1 PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 transcriptional regulator; MucR family transcriptional regulator 1144531 9386982 Hden_1093 Hyphomicrobium denitrificans ATCC 51888 MucR family transcriptional regulator YP_003755228.1 1144130 D 582899 CDS YP_003755229.1 300022618 9386983 1145120..1145521 1 NC_014313.1 KEGG: hba:Hbal_1230 chromosomal replication initiator DnaA domain; PFAM: replication initiation factor DnaA; SMART: replication initiation factor DnaA; replication initiation factor DnaA protein 1145521 9386983 Hden_1094 Hyphomicrobium denitrificans ATCC 51888 replication initiation factor DnaA protein YP_003755229.1 1145120 D 582899 CDS YP_003755230.1 300022619 9386984 1145563..1146135 1 NC_014313.1 KEGG: nwi:Nwi_2226 DNA replication initiation ATPase; DNA replication initiation ATPase 1146135 9386984 Hden_1095 Hyphomicrobium denitrificans ATCC 51888 DNA replication initiation ATPase YP_003755230.1 1145563 D 582899 CDS YP_003755231.1 300022620 9386985 complement(1146136..1146564) 1 NC_014313.1 PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 SufE-like protein; Fe-S metabolism associated SufE 1146564 9386985 Hden_1096 Hyphomicrobium denitrificans ATCC 51888 Fe-S metabolism associated SufE YP_003755231.1 1146136 R 582899 CDS YP_003755232.1 300022621 9386986 complement(1146647..1147024) 1 NC_014313.1 KEGG: bra:BRADO2707 hypothetical protein; hypothetical protein 1147024 9386986 Hden_1097 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755232.1 1146647 R 582899 CDS YP_003755233.1 300022622 9386987 1147271..1147999 1 NC_014313.1 PFAM: peptidoglycan-binding protein; KEGG: azc:AZC_1094 hypothetical protein; peptidoglycan-binding protein 1147999 9386987 Hden_1098 Hyphomicrobium denitrificans ATCC 51888 peptidoglycan-binding protein YP_003755233.1 1147271 D 582899 CDS YP_003755234.1 300022623 9386988 1148033..1148377 1 NC_014313.1 PFAM: protein of unknown function DUF1491; KEGG: xau:Xaut_1408 hypothetical protein; hypothetical protein 1148377 9386988 Hden_1099 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755234.1 1148033 D 582899 CDS YP_003755235.1 300022624 9386989 1148585..1148779 1 NC_014313.1 KEGG: hmg:100207741 hypothetical protein LOC100207741; hypothetical protein 1148779 9386989 Hden_1100 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755235.1 1148585 D 582899 CDS YP_003755236.1 300022625 9386990 complement(1148798..1149355) 1 NC_014313.1 KEGG: nwi:Nwi_1148 hypothetical protein; hypothetical protein 1149355 9386990 Hden_1101 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755236.1 1148798 R 582899 CDS YP_003755237.1 300022626 9386991 complement(1149352..1150008) 1 NC_014313.1 PFAM: protein of unknown function DUF1214; KEGG: oca:OCAR_6618 hypothetical protein; hypothetical protein 1150008 9386991 Hden_1102 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755237.1 1149352 R 582899 CDS YP_003755238.1 300022627 9386992 complement(1150021..1152300) 1 NC_014313.1 TIGRFAM: penicillin-binding protein, 1A family; KEGG: bid:Bind_1627 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 1152300 9386992 Hden_1103 Hyphomicrobium denitrificans ATCC 51888 penicillin-binding protein, 1A family YP_003755238.1 1150021 R 582899 CDS YP_003755239.1 300022628 9386993 1152504..1153046 1 NC_014313.1 PFAM: protein of unknown function UPF0153; KEGG: rhi:NGR_c07710 hypothetical protein; hypothetical protein 1153046 9386993 Hden_1104 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755239.1 1152504 D 582899 CDS YP_003755240.1 300022629 9386994 1153615..1155117 1 NC_014313.1 PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein; hypothetical protein 1155117 9386994 Hden_1105 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755240.1 1153615 D 582899 CDS YP_003755241.1 300022630 9386995 1155302..1157329 1 NC_014313.1 KEGG: pla:Plav_0903 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family 1157329 9386995 Hden_1106 Hyphomicrobium denitrificans ATCC 51888 phage portal protein, HK97 family YP_003755241.1 1155302 D 582899 CDS YP_003755242.1 300022631 9386996 1157351..1157740 1 NC_014313.1 KEGG: syd:Syncc9605_0583 signal peptide peptidase A; hypothetical protein 1157740 9386996 Hden_1107 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755242.1 1157351 D 582899 CDS YP_003755243.1 300022632 9386997 1157992..1158312 1 NC_014313.1 KEGG: swd:Swoo_3382 hypothetical protein; hypothetical protein 1158312 9386997 Hden_1108 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755243.1 1157992 D 582899 CDS YP_003755244.1 300022633 9386998 1158560..1158979 1 NC_014313.1 KEGG: acr:Acry_1960 HAD family hydrolase; hypothetical protein 1158979 9386998 Hden_1109 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755244.1 1158560 D 582899 CDS YP_003755245.1 300022634 9386999 1159144..1159848 1 NC_014313.1 KEGG: pla:Plav_0905 HK97 family phage prohead protease; TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease HK97 family 1159848 9386999 Hden_1110 Hyphomicrobium denitrificans ATCC 51888 phage prohead protease HK97 family YP_003755245.1 1159144 D 582899 CDS YP_003755246.1 300022635 9387000 1160022..1161263 1 NC_014313.1 KEGG: pla:Plav_0906 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; phage major capsid protein, HK97 family 1161263 9387000 Hden_1111 Hyphomicrobium denitrificans ATCC 51888 phage major capsid protein, HK97 family YP_003755246.1 1160022 D 582899 CDS YP_003755247.1 300022636 9387001 1161520..1162095 1 NC_014313.1 KEGG: pla:Plav_0908 phiE125 gp8 hypothetical protein; phiE125 gp8 hypothetical protein 1162095 9387001 Hden_1112 Hyphomicrobium denitrificans ATCC 51888 phiE125 gp8 hypothetical protein YP_003755247.1 1161520 D 582899 CDS YP_003755248.1 300022637 9387002 1162092..1162424 1 NC_014313.1 KEGG: aap:NT05HA_0498 phage head-tail adaptor, TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; phage head-tail adaptor 1162424 9387002 Hden_1113 Hyphomicrobium denitrificans ATCC 51888 phage head-tail adaptor YP_003755248.1 1162092 D 582899 CDS YP_003755249.1 300022638 9387003 1162421..1162591 1 NC_014313.1 KEGG: scl:sce6510 ExbD/TolR-like translocation protein; ExbD/TolR-like translocation protein 1162591 9387003 Hden_1114 Hyphomicrobium denitrificans ATCC 51888 ExbD/TolR-like translocation protein YP_003755249.1 1162421 D 582899 CDS YP_003755250.1 300022639 9387004 1162591..1163004 1 NC_014313.1 KEGG: xau:Xaut_3160 hypothetical protein; hypothetical protein 1163004 9387004 Hden_1115 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755250.1 1162591 D 582899 CDS YP_003755251.1 300022640 9387005 1163163..1163576 1 NC_014313.1 KEGG: pla:Plav_0911 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1; phage major tail protein, TP901-1 family 1163576 9387005 Hden_1116 Hyphomicrobium denitrificans ATCC 51888 phage major tail protein, TP901-1 family YP_003755251.1 1163163 D 582899 CDS YP_003755252.1 300022641 9387006 1163738..1164118 1 NC_014313.1 KEGG: pla:Plav_0913 hypothetical protein; hypothetical protein 1164118 9387006 Hden_1117 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755252.1 1163738 D 582899 CDS YP_003755253.1 300022642 9387007 1164118..1164291 1 NC_014313.1 PFAM: protein of unknown function DUF2376, phage; KEGG: rpe:RPE_1919 hypothetical protein; hypothetical protein 1164291 9387007 Hden_1118 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755253.1 1164118 D 582899 CDS YP_003755254.1 300022643 9387008 1164296..1164889 1 NC_014313.1 KEGG: xau:Xaut_3164 gene transfer agent (GTA) orfg11; gene transfer agent (GTA) orfg11 1164889 9387008 Hden_1119 Hyphomicrobium denitrificans ATCC 51888 gene transfer agent (GTA) orfg11 YP_003755254.1 1164296 D 582899 CDS YP_003755255.1 300022644 9387009 1164902..1165540 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: rpa:RPA1903 hypothetical protein; hypothetical protein 1165540 9387009 Hden_1120 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755255.1 1164902 D 582899 CDS YP_003755256.1 300022645 9387010 1165537..1166397 1 NC_014313.1 PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: pla:Plav_0917 hypothetical protein; Phage conserved hypothetical protein, gene transfer agent-like protein 1166397 9387010 Hden_1121 Hyphomicrobium denitrificans ATCC 51888 Phage conserved hypothetical protein, gene transfer agent-like protein YP_003755256.1 1165537 D 582899 CDS YP_003755257.1 300022646 9387011 1166401..1166850 1 NC_014313.1 KEGG: nha:Nham_1425 phage cell wall peptidase, NlpC/P60; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; phage cell wall peptidase, NlpC/P60 family 1166850 9387011 Hden_1122 Hyphomicrobium denitrificans ATCC 51888 phage cell wall peptidase, NlpC/P60 family YP_003755257.1 1166401 D 582899 CDS YP_003755258.1 300022647 9387012 1166854..1170801 1 NC_014313.1 KEGG: pla:Plav_0919 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 1170801 9387012 Hden_1123 Hyphomicrobium denitrificans ATCC 51888 gene transfer agent (GTA) like protein YP_003755258.1 1166854 D 582899 CDS YP_003755259.1 300022648 9387013 1171172..1172485 1 NC_014313.1 PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: mch:Mchl_1579 peptidoglycan-binding protein; hypothetical protein 1172485 9387013 Hden_1124 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755259.1 1171172 D 582899 CDS YP_003755260.1 300022649 9387014 1172580..1172870 1 NC_014313.1 KEGG: hut:Huta_1380 hypothetical protein; hypothetical protein 1172870 9387014 Hden_1125 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755260.1 1172580 D 582899 CDS YP_003755261.1 300022650 9387015 1172952..1173623 1 NC_014313.1 KEGG: mes:Meso_0894 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 1173623 9387015 Hden_1126 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003755261.1 1172952 D 582899 CDS YP_003755262.1 300022651 9387016 1173613..1174995 1 NC_014313.1 KEGG: oca:OCAR_6578 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1174995 9387016 Hden_1127 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755262.1 1173613 D 582899 CDS YP_003755263.1 300022652 9387017 1175196..1175672 1 NC_014313.1 PFAM: 17 kDa surface antigen; KEGG: pla:Plav_0789 17 kDa surface antigen; 17 kDa surface antigen 1175672 9387017 Hden_1128 Hyphomicrobium denitrificans ATCC 51888 17 kDa surface antigen YP_003755263.1 1175196 D 582899 CDS YP_003755264.1 300022653 9387018 1175819..1177006 1 NC_014313.1 KEGG: sme:SMc02361 cytochrome C biogenesis transmembrane protein; TIGRFAM: cytochrome C biogenesis protein CcmI; SMART: Tetratricopeptide repeat; cytochrome C biogenesis protein CcmI 1177006 9387018 Hden_1129 Hyphomicrobium denitrificans ATCC 51888 cytochrome C biogenesis protein CcmI YP_003755264.1 1175819 D 582899 CDS YP_003755265.1 300022654 9387019 1177030..1177497 1 NC_014313.1 PFAM: CcmE/CycJ protein; KEGG: azc:AZC_1133 cytochrome c-type biogenesis protein; CcmE/CycJ protein 1177497 9387019 Hden_1130 Hyphomicrobium denitrificans ATCC 51888 CcmE/CycJ protein YP_003755265.1 1177030 D 582899 CDS YP_003755266.1 300022655 9387020 1177510..1179492 1 NC_014313.1 KEGG: sme:SMc02363 cytochrome C biogenesis transmembrane protein; TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; cytochrome C biogenesis protein CcmF 1179492 9387020 Hden_1131 Hyphomicrobium denitrificans ATCC 51888 cytochrome C biogenesis protein CcmF YP_003755266.1 1177510 D 582899 CDS YP_003755267.1 300022656 9387021 1179499..1179969 1 NC_014313.1 PFAM: cytochrome C biogenesis protein; KEGG: mrd:Mrad2831_4994 cytochrome C biogenesis protein; cytochrome C biogenesis protein 1179969 9387021 Hden_1132 Hyphomicrobium denitrificans ATCC 51888 cytochrome C biogenesis protein YP_003755267.1 1179499 D 582899 CDS YP_003755268.1 300022657 9387022 1180132..1181724 1 NC_014313.1 SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: bja:blr3130 serine protease DO-like precursor; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1181724 9387022 Hden_1133 Hyphomicrobium denitrificans ATCC 51888 protease Do YP_003755268.1 1180132 D 582899 CDS YP_003755269.1 300022658 9387023 1181735..1182523 1 NC_014313.1 KEGG: rpd:RPD_2012 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 1182523 9387023 Hden_1134 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003755269.1 1181735 D 582899 CDS YP_003755270.1 300022659 9387024 1182507..1183970 1 NC_014313.1 KEGG: mch:Mchl_0375 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1183970 9387024 Hden_1135 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755270.1 1182507 D 582899 CDS YP_003755271.1 300022660 9387025 1183957..1186929 1 NC_014313.1 KEGG: pla:Plav_0946 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 1186929 9387025 Hden_1136 Hyphomicrobium denitrificans ATCC 51888 (glutamate--ammonia-ligase) adenylyltransferase YP_003755271.1 1183957 D 582899 CDS YP_003755272.1 300022661 9387026 1187068..1187685 1 NC_014313.1 KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 1187685 9387026 Hden_1137 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003755272.1 1187068 D 582899 CDS YP_003755273.1 300022662 9387027 1187707..1188183 1 NC_014313.1 KEGG: pla:Plav_0952 hypothetical protein; hypothetical protein 1188183 9387027 Hden_1138 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755273.1 1187707 D 582899 CDS YP_003755274.1 300022663 9387028 1188180..1188698 1 NC_014313.1 KEGG: bxe:Bxe_B1627 membrane-associated protein; membrane-associated protein 1188698 9387028 Hden_1139 Hyphomicrobium denitrificans ATCC 51888 membrane-associated protein YP_003755274.1 1188180 D 582899 CDS YP_003755275.1 300022664 9387029 complement(1188742..1189764) 1 NC_014313.1 KEGG: rec:RHECIAT_CH0001392 probable two-component sensor histidine kinase protein; PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; histidine kinase A domain-containing protein 1189764 9387029 Hden_1140 Hyphomicrobium denitrificans ATCC 51888 histidine kinase A domain-containing protein YP_003755275.1 1188742 R 582899 CDS YP_003755276.1 300022665 9387030 complement(1189953..1192610) 1 NC_014313.1 KEGG: xau:Xaut_4749 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; aminopeptidase N 1192610 9387030 Hden_1141 Hyphomicrobium denitrificans ATCC 51888 aminopeptidase N YP_003755276.1 1189953 R 582899 CDS YP_003755277.1 300022666 9387031 complement(1192705..1193850) 1 NC_014313.1 KEGG: hne:HNE_0585 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 1193850 9387031 Hden_1142 Hyphomicrobium denitrificans ATCC 51888 carboxynorspermidine decarboxylase YP_003755277.1 1192705 R 582899 CDS YP_003755278.1 300022667 9387032 complement(1193905..1194342) 1 NC_014313.1 KEGG: rlg:Rleg_6611 drug resistance transporter EmrB/QacA subfamily; hypothetical protein 1194342 9387032 Hden_1143 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755278.1 1193905 R 582899 CDS YP_003755279.1 300022668 9387033 complement(1194342..1195556) 1 NC_014313.1 PFAM: saccharopine dehydrogenase; KEGG: hne:HNE_0588 saccharopine dehydrogenase (NAD+, L-lysine forming); saccharopine dehydrogenase 1195556 9387033 Hden_1144 Hyphomicrobium denitrificans ATCC 51888 saccharopine dehydrogenase YP_003755279.1 1194342 R 582899 CDS YP_003755280.1 300022669 9387034 complement(1195731..1196273) 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: mpt:Mpe_A2087 sulfite oxidase cytochrome subunit; cytochrome C class I 1196273 9387034 Hden_1145 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003755280.1 1195731 R 582899 CDS YP_003755281.1 300022670 9387035 complement(1196260..1197558) 1 NC_014313.1 PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: mpt:Mpe_A2086 sulfite oxidase SoxC; oxidoreductase molybdopterin binding protein 1197558 9387035 Hden_1146 Hyphomicrobium denitrificans ATCC 51888 oxidoreductase molybdopterin binding protein YP_003755281.1 1196260 R 582899 CDS YP_003755282.1 300022671 9387036 complement(1197577..1198392) 1 NC_014313.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: mno:Mnod_5984 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ 1198392 9387036 Hden_1147 Hyphomicrobium denitrificans ATCC 51888 sulfur oxidation protein SoxZ YP_003755282.1 1197577 R 582899 CDS YP_003755283.1 300022672 9387037 complement(1198582..1199229) 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: mlo:mlr7359 transcriptional regulator; TetR family transcriptional regulator 1199229 9387037 Hden_1148 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003755283.1 1198582 R 582899 CDS YP_003755284.1 300022673 9387038 1199245..1200648 1 NC_014313.1 KEGG: azc:AZC_3911 secretion protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1200648 9387038 Hden_1149 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003755284.1 1199245 D 582899 CDS YP_003755285.1 300022674 9387039 1200662..1203826 1 NC_014313.1 KEGG: azc:AZC_3910 hydrophobe/amphiphile efflux-1; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1203826 9387039 Hden_1150 Hyphomicrobium denitrificans ATCC 51888 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003755285.1 1200662 D 582899 CDS YP_003755286.1 300022675 9387040 1203952..1206408 1 NC_014313.1 KEGG: bid:Bind_0441 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein 1206408 9387040 Hden_1151 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755286.1 1203952 D 582899 CDS YP_003755287.1 300022676 9387041 complement(1206412..1207530) 1 NC_014313.1 PFAM: Extensin family protein; KEGG: eli:ELI_05395 hypothetical protein; Extensin family protein 1207530 9387041 Hden_1152 Hyphomicrobium denitrificans ATCC 51888 Extensin family protein YP_003755287.1 1206412 R 582899 CDS YP_003755288.1 300022677 9387042 complement(1207731..1208711) 1 NC_014313.1 manually curated; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mch:Mchl_0534 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 1208711 9387042 Hden_1153 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003755288.1 1207731 R 582899 CDS YP_003755289.1 300022678 9387043 complement(1208875..1209315) 1 NC_014313.1 KEGG: pla:Plav_1409 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 1209315 9387043 Hden_1154 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003755289.1 1208875 R 582899 CDS YP_003755290.1 300022679 9387044 1209768..1211699 1 NC_014313.1 KEGG: bph:Bphy_6874 hypothetical protein; hypothetical protein 1211699 9387044 Hden_1155 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755290.1 1209768 D 582899 CDS YP_003755291.1 300022680 9387045 complement(1211731..1212033) 1 NC_014313.1 KEGG: nfi:NFIA_054910 SNF2 family helicase/ATPase; hypothetical protein 1212033 9387045 Hden_1156 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755291.1 1211731 R 582899 CDS YP_003755292.1 300022681 9387046 1212317..1212481 1 NC_014313.1 hypothetical protein 1212481 9387046 Hden_1157 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755292.1 1212317 D 582899 CDS YP_003755293.1 300022682 9387047 1212478..1212597 1 NC_014313.1 hypothetical protein 1212597 9387047 Hden_1158 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755293.1 1212478 D 582899 CDS YP_003755294.1 300022683 9387048 complement(1212681..1213817) 1 NC_014313.1 PFAM: FAD dependent oxidoreductase; KEGG: bpt:Bpet0858 hypothetical protein; FAD dependent oxidoreductase 1213817 9387048 Hden_1159 Hyphomicrobium denitrificans ATCC 51888 FAD dependent oxidoreductase YP_003755294.1 1212681 R 582899 CDS YP_003755295.1 300022684 9387049 1214079..1215383 1 NC_014313.1 KEGG: rsp:RSP_3313 phage integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein 1215383 9387049 Hden_1160 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003755295.1 1214079 D 582899 CDS YP_003755296.1 300022685 9387050 complement(1215439..1215771) 1 NC_014313.1 KEGG: cyn:Cyan7425_1808 XRE family plasmid maintenance system antidote protein; hypothetical protein 1215771 9387050 Hden_1161 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755296.1 1215439 R 582899 CDS YP_003755297.1 300022686 9387051 complement(1215791..1216147) 1 NC_014313.1 KEGG: vpa:VPA0763 sensor kinase CitA; hypothetical protein 1216147 9387051 Hden_1162 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755297.1 1215791 R 582899 CDS YP_003755298.1 300022687 9387052 complement(1216151..1216372) 1 NC_014313.1 KEGG: ath:AT3G46850 subtilase family protein; hypothetical protein 1216372 9387052 Hden_1163 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755298.1 1216151 R 582899 CDS YP_003755299.1 300022688 9387053 complement(1216369..1216620) 1 NC_014313.1 TIGRFAM: restriction alleviation protein, Lar family; KEGG: rsq:Rsph17025_1730 hypothetical protein; restriction alleviation protein, Lar family 1216620 9387053 Hden_1164 Hyphomicrobium denitrificans ATCC 51888 restriction alleviation protein, Lar family YP_003755299.1 1216369 R 582899 CDS YP_003755300.1 300022689 9387055 complement(1216832..1217590) 1 NC_014313.1 KEGG: pag:PLES_15711 hypothetical protein; hypothetical protein 1217590 9387055 Hden_1166 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755300.1 1216832 R 582899 CDS YP_003755301.1 300022690 9387056 complement(1217593..1218057) 1 NC_014313.1 KEGG: nve:NEMVE_v1g92522 hypothetical protein; hypothetical protein 1218057 9387056 Hden_1167 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755301.1 1217593 R 582899 CDS YP_003755302.1 300022691 9387057 complement(1218054..1218236) 1 NC_014313.1 hypothetical protein 1218236 9387057 Hden_1168 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755302.1 1218054 R 582899 CDS YP_003755303.1 300022692 9387058 complement(1218233..1218451) 1 NC_014313.1 KEGG: ttr:Tter_2322 transcriptional regulator, TrmB; hypothetical protein 1218451 9387058 Hden_1169 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755303.1 1218233 R 582899 CDS YP_003755304.1 300022693 9387059 complement(1218451..1218651) 1 NC_014313.1 KEGG: hypothetical protein; hypothetical protein 1218651 9387059 Hden_1170 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755304.1 1218451 R 582899 CDS YP_003755305.1 300022694 9387060 complement(1218809..1219285) 1 NC_014313.1 KEGG: vha:VIBHAR_01963 hypothetical protein; hypothetical protein 1219285 9387060 Hden_1171 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755305.1 1218809 R 582899 CDS YP_003755306.1 300022695 9387061 complement(1219288..1219764) 1 NC_014313.1 KEGG: oca:OCAR_5559 hypothetical protein; hypothetical protein 1219764 9387061 Hden_1172 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755306.1 1219288 R 582899 CDS YP_003755307.1 300022696 9387062 complement(1220036..1220656) 1 NC_014313.1 KEGG: swi:Swit_4824 phage repressor; hypothetical protein 1220656 9387062 Hden_1173 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755307.1 1220036 R 582899 CDS YP_003755308.1 300022697 9387063 1220754..1221005 1 NC_014313.1 KEGG: nwi:Nwi_2379 hypothetical protein; hypothetical protein 1221005 9387063 Hden_1174 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755308.1 1220754 D 582899 CDS YP_003755309.1 300022698 9387064 1221020..1221913 1 NC_014313.1 KEGG: ssl:SS1G_10932 hypothetical protein; hypothetical protein 1221913 9387064 Hden_1175 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755309.1 1221020 D 582899 CDS YP_003755310.1 300022699 9387065 1222153..1222977 1 NC_014313.1 KEGG: mch:Mchl_0002 chromosomal replication initiation protein; hypothetical protein 1222977 9387065 Hden_1176 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755310.1 1222153 D 582899 CDS YP_003755311.1 300022700 9387066 1222974..1223381 1 NC_014313.1 KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases; chemotaxis protein CheA 1223381 9387066 Hden_1177 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheA YP_003755311.1 1222974 D 582899 CDS YP_003755312.1 300022701 9387067 1223382..1223534 1 NC_014313.1 hypothetical protein 1223534 9387067 Hden_1178 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755312.1 1223382 D 582899 CDS YP_003755313.1 300022702 9387068 1223531..1224298 1 NC_014313.1 KEGG: mno:Mnod_6985 hypothetical protein; hypothetical protein 1224298 9387068 Hden_1179 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755313.1 1223531 D 582899 CDS YP_003755314.1 300022703 9387069 1224295..1224648 1 NC_014313.1 KEGG: pfs:pQBR0370 hypothetical protein; hypothetical protein 1224648 9387069 Hden_1180 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755314.1 1224295 D 582899 CDS YP_003755315.1 300022704 9387070 1224645..1226399 1 NC_014313.1 SMART: DEAD-like helicase; KEGG: pfs:pQBR0371 helicase; DEAD-like helicase 1226399 9387070 Hden_1181 Hyphomicrobium denitrificans ATCC 51888 DEAD-like helicase YP_003755315.1 1224645 D 582899 CDS YP_003755316.1 300022705 9387071 1226410..1226637 1 NC_014313.1 hypothetical protein 1226637 9387071 Hden_1182 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755316.1 1226410 D 582899 CDS YP_003755317.1 300022706 9387072 1226634..1227158 1 NC_014313.1 KEGG: dac:Daci_3368 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hypothetical protein 1227158 9387072 Hden_1183 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755317.1 1226634 D 582899 CDS YP_003755318.1 300022707 9387073 1227151..1227537 1 NC_014313.1 KEGG: hne:HNE_3354 hypothetical protein; hypothetical protein 1227537 9387073 Hden_1184 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755318.1 1227151 D 582899 CDS YP_003755319.1 300022708 9387074 1227547..1227882 1 NC_014313.1 KEGG: cpi:Cpin_4904 asparagine synthase (glutamine-hydrolyzing); hypothetical protein 1227882 9387074 Hden_1185 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755319.1 1227547 D 582899 CDS YP_003755320.1 300022709 9387075 1227882..1229036 1 NC_014313.1 KEGG: bcv:Bcav_0946 transposase IS3/IS911 family protein; hypothetical protein 1229036 9387075 Hden_1186 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755320.1 1227882 D 582899 CDS YP_003755321.1 300022710 9387076 1229020..1229412 1 NC_014313.1 KEGG: bbt:BBta_2039 RND family mulitdrug efflux protein; hypothetical protein 1229412 9387076 Hden_1187 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755321.1 1229020 D 582899 CDS YP_003755322.1 300022711 9387077 1229409..1229948 1 NC_014313.1 KEGG: vvi:100256322 hypothetical protein LOC100256322; hypothetical protein 1229948 9387077 Hden_1188 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755322.1 1229409 D 582899 CDS YP_003755323.1 300022712 9387078 1229945..1230826 1 NC_014313.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pap:PSPA7_4452 DNA adenine methyltransferase; D12 class N6 adenine-specific DNA methyltransferase 1230826 9387078 Hden_1189 Hyphomicrobium denitrificans ATCC 51888 D12 class N6 adenine-specific DNA methyltransferase YP_003755323.1 1229945 D 582899 CDS YP_003755324.1 300022713 9387079 1230851..1231255 1 NC_014313.1 KEGG: mea:Mex_1p3981 hypothetical protein; hypothetical protein 1231255 9387079 Hden_1190 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755324.1 1230851 D 582899 CDS YP_003755325.1 300022714 9387080 1231259..1231405 1 NC_014313.1 hypothetical protein 1231405 9387080 Hden_1191 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755325.1 1231259 D 582899 CDS YP_003755326.1 300022715 9387081 1231405..1231725 1 NC_014313.1 KEGG: atc:AGR_C_1668 hypothetical 12.4 KDA protein in MucR 5'region (ORF2); hypothetical protein 1231725 9387081 Hden_1192 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755326.1 1231405 D 582899 CDS YP_003755327.1 300022716 9387082 1231733..1231948 1 NC_014313.1 KEGG: gme:Gmet_1092 polyphosphate:AMP phosphotransferase; hypothetical protein 1231948 9387082 Hden_1193 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755327.1 1231733 D 582899 CDS YP_003755328.1 300022717 9387083 1232026..1232298 1 NC_014313.1 KEGG: ame:413092 similar to Cdep CG31536-PA, isoform A; hypothetical protein 1232298 9387083 Hden_1194 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755328.1 1232026 D 582899 CDS YP_003755329.1 300022718 9387084 complement(1232860..1234128) 1 NC_014313.1 KEGG: bln:Blon_1259 allergen V5/TPX-1 family protein; hypothetical protein 1234128 9387084 Hden_1195 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755329.1 1232860 R 582899 CDS YP_003755330.1 300022719 9387085 complement(1234264..1234521) 1 NC_014313.1 KEGG: pfo:Pfl01_4702 acyltransferase 3; hypothetical protein 1234521 9387085 Hden_1196 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755330.1 1234264 R 582899 CDS YP_003755331.1 300022720 9387086 complement(1234532..1234747) 1 NC_014313.1 KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; hypothetical protein 1234747 9387086 Hden_1197 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755331.1 1234532 R 582899 CDS YP_003755332.1 300022721 9387087 1234880..1235086 1 NC_014313.1 KEGG: nha:Nham_0595 hypothetical protein; hypothetical protein 1235086 9387087 Hden_1198 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755332.1 1234880 D 582899 CDS YP_003755333.1 300022722 9387088 1235125..1235301 1 NC_014313.1 hypothetical protein 1235301 9387088 Hden_1199 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755333.1 1235125 D 582899 CDS YP_003755334.1 300022723 9387089 1235305..1235463 1 NC_014313.1 KEGG: abi:Aboo_1457 hypothetical protein; hypothetical protein 1235463 9387089 Hden_1200 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755334.1 1235305 D 582899 CDS YP_003755335.1 300022724 9387090 1235460..1235717 1 NC_014313.1 KEGG: der:Dere_GG14392 GG14392 gene product from transcript GG14392-RA; hypothetical protein 1235717 9387090 Hden_1201 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755335.1 1235460 D 582899 CDS YP_003755336.1 300022725 9387092 1236124..1236351 1 NC_014313.1 KEGG: pntA; NAD(P)(+) transhydrogenase (AB-specific), subunit alpha; hypothetical protein 1236351 9387092 Hden_1203 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755336.1 1236124 D 582899 CDS YP_003755337.1 300022726 9387093 1236348..1236623 1 NC_014313.1 KEGG: pjd:Pjdr2_0312 hypothetical protein; hypothetical protein 1236623 9387093 Hden_1204 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755337.1 1236348 D 582899 CDS YP_003755338.1 300022727 9387094 1236727..1237008 1 NC_014313.1 SMART: hypothetical protein; KEGG: cpi:Cpin_4935 5'-3' DNA helicase; plasmid maintenance system antidote protein, XRE family 1237008 9387094 Hden_1205 Hyphomicrobium denitrificans ATCC 51888 plasmid maintenance system antidote protein, XRE family YP_003755338.1 1236727 D 582899 CDS YP_003755339.1 300022728 9387095 1237008..1237250 1 NC_014313.1 KEGG: tbr:Tb927.4.4600 hypothetical protein; hypothetical protein 1237250 9387095 Hden_1206 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755339.1 1237008 D 582899 CDS YP_003755340.1 300022729 9387096 1237916..1238056 1 NC_014313.1 hypothetical protein 1238056 9387096 Hden_1207 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755340.1 1237916 D 582899 CDS YP_003755341.1 300022730 9387097 1238146..1238298 1 NC_014313.1 KEGG: pat:Patl_2408 hypothetical protein; hypothetical protein 1238298 9387097 Hden_1208 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755341.1 1238146 D 582899 CDS YP_003755342.1 300022731 9387098 1238295..1238492 1 NC_014313.1 KEGG: nve:NEMVE_v1g240452 hypothetical protein; hypothetical protein 1238492 9387098 Hden_1209 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755342.1 1238295 D 582899 CDS YP_003755343.1 300022732 9387099 1238492..1238707 1 NC_014313.1 hypothetical protein 1238707 9387099 Hden_1210 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755343.1 1238492 D 582899 CDS YP_003755344.1 300022733 9387100 1238856..1239134 1 NC_014313.1 KEGG: pop:POPTR_416019 hypothetical protein; hypothetical protein 1239134 9387100 Hden_1211 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755344.1 1238856 D 582899 CDS YP_003755345.1 300022734 9387101 1239147..1240457 1 NC_014313.1 PFAM: peptidoglycan-binding protein; KEGG: smb:smi_0979 hypothetical protein; peptidoglycan-binding protein 1240457 9387101 Hden_1212 Hyphomicrobium denitrificans ATCC 51888 peptidoglycan-binding protein YP_003755345.1 1239147 D 582899 CDS YP_003755346.1 300022735 9387102 1240506..1240643 1 NC_014313.1 hypothetical protein 1240643 9387102 Hden_1213 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755346.1 1240506 D 582899 CDS YP_003755347.1 300022736 9387103 1240640..1240828 1 NC_014313.1 KEGG: spu:580349 similar to NM23-R7; hypothetical protein 1240828 9387103 Hden_1214 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755347.1 1240640 D 582899 CDS YP_003755348.1 300022737 9387104 1240821..1241726 1 NC_014313.1 KEGG: oca:OCAR_5574 hypothetical protein; hypothetical protein 1241726 9387104 Hden_1215 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755348.1 1240821 D 582899 CDS YP_003755349.1 300022738 9387105 1241979..1242590 1 NC_014313.1 KEGG: mgm:Mmc1_2826 hypothetical protein; hypothetical protein 1242590 9387105 Hden_1216 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755349.1 1241979 D 582899 CDS YP_003755350.1 300022739 9387106 1242590..1244461 1 NC_014313.1 PFAM: terminase GpA; KEGG: spe:Spro_4922 terminase GpA; terminase GpA 1244461 9387106 Hden_1217 Hyphomicrobium denitrificans ATCC 51888 terminase GpA YP_003755350.1 1242590 D 582899 CDS YP_003755351.1 300022740 9387107 1244465..1244710 1 NC_014313.1 KEGG: wpi:WPa_1306 phage related protein; hypothetical protein 1244710 9387107 Hden_1218 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755351.1 1244465 D 582899 CDS YP_003755352.1 300022741 9387108 1244720..1246345 1 NC_014313.1 KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 1246345 9387108 Hden_1219 Hyphomicrobium denitrificans ATCC 51888 phage portal protein, lambda family YP_003755352.1 1244720 D 582899 CDS YP_003755353.1 300022742 9387109 1246351..1247640 1 NC_014313.1 PFAM: peptidase S49; KEGG: oca:OCAR_5580 peptidase S49; peptidase S49 1247640 9387109 Hden_1220 Hyphomicrobium denitrificans ATCC 51888 peptidase S49 YP_003755353.1 1246351 D 582899 CDS YP_003755354.1 300022743 9387110 1247692..1248366 1 NC_014313.1 KEGG: mno:Mnod_2459 hypothetical protein; hypothetical protein 1248366 9387110 Hden_1221 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755354.1 1247692 D 582899 CDS YP_003755355.1 300022744 9387111 1248484..1249557 1 NC_014313.1 KEGG: mno:Mnod_0593 hypothetical protein; hypothetical protein 1249557 9387111 Hden_1222 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755355.1 1248484 D 582899 CDS YP_003755356.1 300022745 9387112 1249559..1249924 1 NC_014313.1 KEGG: pno:SNOG_00627 hypothetical protein; hypothetical protein 1249924 9387112 Hden_1223 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755356.1 1249559 D 582899 CDS YP_003755357.1 300022746 9387113 1249924..1250322 1 NC_014313.1 KEGG: tit:Thit_1607 hydrogenase expression/formation protein HypD; hypothetical protein 1250322 9387113 Hden_1224 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755357.1 1249924 D 582899 CDS YP_003755358.1 300022747 9387114 1250326..1251123 1 NC_014313.1 KEGG: mno:Mnod_2456 hypothetical protein; hypothetical protein 1251123 9387114 Hden_1225 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755358.1 1250326 D 582899 CDS YP_003755359.1 300022748 9387115 1251145..1251354 1 NC_014313.1 KEGG: bpt:Bpet4417 phage-like protein; phage-like protein 1251354 9387115 Hden_1226 Hyphomicrobium denitrificans ATCC 51888 phage-like protein YP_003755359.1 1251145 D 582899 CDS YP_003755360.1 300022749 9387116 1251389..1252924 1 NC_014313.1 PFAM: Mu tail sheath family protein; KEGG: bbt:BBta_6592 Mu-like prophage FluMu tail sheath protein; Mu tail sheath family protein 1252924 9387116 Hden_1227 Hyphomicrobium denitrificans ATCC 51888 Mu tail sheath family protein YP_003755360.1 1251389 D 582899 CDS YP_003755361.1 300022750 9387117 1252975..1253340 1 NC_014313.1 KEGG: bbt:BBta_6591 hypothetical protein; hypothetical protein 1253340 9387117 Hden_1228 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755361.1 1252975 D 582899 CDS YP_003755362.1 300022751 9387118 1253379..1253783 1 NC_014313.1 KEGG: xtr:780107 MKL/myocardin-like 2; hypothetical protein 1253783 9387118 Hden_1229 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755362.1 1253379 D 582899 CDS YP_003755363.1 300022752 9387119 1253948..1255957 1 NC_014313.1 KEGG: oan:Oant_0888 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 1255957 9387119 Hden_1230 Hyphomicrobium denitrificans ATCC 51888 phage tail tape measure protein, TP901 family YP_003755363.1 1253948 D 582899 CDS YP_003755364.1 300022753 9387120 1255957..1257216 1 NC_014313.1 PFAM: DNA circulation family protein; KEGG: bbt:BBta_6587 Mu-like prophage DNA circulation protein; DNA circulation family protein 1257216 9387120 Hden_1231 Hyphomicrobium denitrificans ATCC 51888 DNA circulation family protein YP_003755364.1 1255957 D 582899 CDS YP_003755365.1 300022754 9387121 1257225..1258271 1 NC_014313.1 PFAM: Mu P family protein; KEGG: bbt:BBta_6586 Mu-like prophage tail protein; Mu P family protein 1258271 9387121 Hden_1232 Hyphomicrobium denitrificans ATCC 51888 Mu P family protein YP_003755365.1 1257225 D 582899 CDS YP_003755366.1 300022755 9387122 1258271..1258630 1 NC_014313.1 KEGG: mno:Mnod_2446 Mu-like prophage protein GP45-like protein; Mu-like prophage protein GP45-like protein 1258630 9387122 Hden_1233 Hyphomicrobium denitrificans ATCC 51888 Mu-like prophage protein GP45-like protein YP_003755366.1 1258271 D 582899 CDS YP_003755367.1 300022756 9387123 1258637..1258894 1 NC_014313.1 manually curated; KEGG: oan:Oant_2301 PaaR repeat-containing protein; PaaR repeat-containing protein 1258894 9387123 Hden_1234 Hyphomicrobium denitrificans ATCC 51888 PaaR repeat-containing protein YP_003755367.1 1258637 D 582899 CDS YP_003755368.1 300022757 9387124 1258894..1259487 1 NC_014313.1 PFAM: GP46 family protein; KEGG: bbt:BBta_6584 bacteriophage protein, GP46-like protein; GP46 family protein 1259487 9387124 Hden_1235 Hyphomicrobium denitrificans ATCC 51888 GP46 family protein YP_003755368.1 1258894 D 582899 CDS YP_003755369.1 300022758 9387125 1259500..1260582 1 NC_014313.1 PFAM: Baseplate J family protein; KEGG: bbt:BBta_6583 bacteriophage protein; Baseplate J family protein 1260582 9387125 Hden_1236 Hyphomicrobium denitrificans ATCC 51888 Baseplate J family protein YP_003755369.1 1259500 D 582899 CDS YP_003755370.1 300022759 9387126 1260579..1261310 1 NC_014313.1 PFAM: protein of unknown function DUF2313, Mu protein gp48; KEGG: bbt:BBta_6582 hypothetical protein; hypothetical protein 1261310 9387126 Hden_1237 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755370.1 1260579 D 582899 CDS YP_003755371.1 300022760 9387127 1261303..1262220 1 NC_014313.1 KEGG: bbt:BBta_6581 hypothetical protein; hypothetical protein 1262220 9387127 Hden_1238 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755371.1 1261303 D 582899 CDS YP_003755372.1 300022761 9387128 1262225..1263535 1 NC_014313.1 KEGG: azl:AZL_025360 hypothetical protein; hypothetical protein 1263535 9387128 Hden_1239 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755372.1 1262225 D 582899 CDS YP_003755373.1 300022762 9387129 1263526..1264356 1 NC_014313.1 KEGG: tps:THAPSDRAFT_10744 hypothetical protein; hypothetical protein 1264356 9387129 Hden_1240 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755373.1 1263526 D 582899 CDS YP_003755374.1 300022763 9387130 1264399..1265277 1 NC_014313.1 PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: xau:Xaut_3175 hypothetical protein; hypothetical protein 1265277 9387130 Hden_1241 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755374.1 1264399 D 582899 CDS YP_003755375.1 300022764 9387131 1265277..1265672 1 NC_014313.1 KEGG: ecg:E2348C_2732 predicted endopeptidase; hypothetical protein 1265672 9387131 Hden_1242 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755375.1 1265277 D 582899 CDS YP_003755376.1 300022765 9387132 1265669..1265962 1 NC_014313.1 KEGG: pno:SNOG_15521 hypothetical protein; hypothetical protein 1265962 9387132 Hden_1243 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755376.1 1265669 D 582899 CDS YP_003755377.1 300022766 9387133 1265968..1266570 1 NC_014313.1 KEGG: cai:Caci_1610 pyridoxal-5'-phosphate-dependent protein subunit beta; hypothetical protein 1266570 9387133 Hden_1244 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755377.1 1265968 D 582899 CDS YP_003755378.1 300022767 9387134 1266618..1266956 1 NC_014313.1 KEGG: npu:Npun_R0782 MotA/TolQ/ExbB proton channel; hypothetical protein 1266956 9387134 Hden_1245 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755378.1 1266618 D 582899 CDS YP_003755379.1 300022768 9387137 1267924..1268580 1 NC_014313.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: pla:Plav_3003 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1268580 9387137 Hden_1246 Hyphomicrobium denitrificans ATCC 51888 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003755379.1 1267924 D 582899 CDS YP_003755380.1 300022769 9387138 1268922..1270358 1 NC_014313.1 KEGG: mpo:Mpop_5239 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1270358 9387138 Hden_1247 Hyphomicrobium denitrificans ATCC 51888 TolC family type I secretion outer membrane protein YP_003755380.1 1268922 D 582899 CDS YP_003755381.1 300022770 9387139 1270644..1272140 1 NC_014313.1 PFAM: protein of unknown function DUF2497; KEGG: psl:Psta_4372 hypothetical protein; hypothetical protein 1272140 9387139 Hden_1248 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755381.1 1270644 D 582899 CDS YP_003755382.1 300022771 9387140 1272447..1273136 1 NC_014313.1 KEGG: mrd:Mrad2831_5431 hypothetical protein; hypothetical protein 1273136 9387140 Hden_1249 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755382.1 1272447 D 582899 CDS YP_003755383.1 300022772 9387141 1273258..1276077 1 NC_014313.1 KEGG: pla:Plav_3006 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 1276077 9387141 Hden_1250 Hyphomicrobium denitrificans ATCC 51888 valyl-tRNA synthetase YP_003755383.1 1273258 D 582899 CDS YP_003755384.1 300022773 9387142 complement(1276227..1276928) 1 NC_014313.1 KEGG: abo:ABO_0848 hypothetical protein; hypothetical protein 1276928 9387142 Hden_1251 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755384.1 1276227 R 582899 CDS YP_003755385.1 300022774 9387143 complement(1276930..1278066) 1 NC_014313.1 PFAM: peptidase M48 Ste24p; KEGG: sjp:SJA_C1-07870 Zn-dependent protease; peptidase M48 Ste24p 1278066 9387143 Hden_1252 Hyphomicrobium denitrificans ATCC 51888 peptidase M48 Ste24p YP_003755385.1 1276930 R 582899 CDS YP_003755386.1 300022775 9387144 1278487..1280211 1 NC_014313.1 TIGRFAM: dihydroxy-acid dehydratase; KEGG: pla:Plav_3010 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1280211 9387144 Hden_1253 Hyphomicrobium denitrificans ATCC 51888 dihydroxy-acid dehydratase YP_003755386.1 1278487 D 582899 CDS YP_003755387.1 300022776 9387145 1280198..1281310 1 NC_014313.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mno:Mnod_5367 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1281310 9387145 Hden_1254 Hyphomicrobium denitrificans ATCC 51888 Sel1 domain-containing protein repeat-containing protein YP_003755387.1 1280198 D 582899 CDS YP_003755388.1 300022777 9387146 complement(1281319..1282101) 1 NC_014313.1 KEGG: rsp:RSP_2657 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III 1282101 9387146 Hden_1255 Hyphomicrobium denitrificans ATCC 51888 exodeoxyribonuclease III YP_003755388.1 1281319 R 582899 CDS YP_003755389.1 300022778 9387147 complement(1282151..1282474) 1 NC_014313.1 KEGG: mpo:Mpop_3583 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 1282474 9387147 Hden_1256 Hyphomicrobium denitrificans ATCC 51888 iron-sulfur cluster assembly accessory protein YP_003755389.1 1282151 R 582899 CDS YP_003755390.1 300022779 9387148 1282591..1283820 1 NC_014313.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mes:Meso_1814 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 1283820 9387148 Hden_1257 Hyphomicrobium denitrificans ATCC 51888 deoxyguanosinetriphosphate triphosphohydrolase YP_003755390.1 1282591 D 582899 CDS YP_003755391.1 300022780 9387149 1283911..1285671 1 NC_014313.1 TIGRFAM: arginyl-tRNA synthetase; KEGG: nha:Nham_1758 arginyl-tRNA synthetase; arginyl-tRNA synthetase 1285671 9387149 Hden_1258 Hyphomicrobium denitrificans ATCC 51888 arginyl-tRNA synthetase YP_003755391.1 1283911 D 582899 CDS YP_003755392.1 300022781 9387150 1285732..1287402 1 NC_014313.1 PFAM: sporulation domain protein; KEGG: bbt:BBta_4421 hypothetical protein; sporulation domain-containing protein 1287402 9387150 Hden_1259 Hyphomicrobium denitrificans ATCC 51888 sporulation domain-containing protein YP_003755392.1 1285732 D 582899 CDS YP_003755393.1 300022782 9387151 1287644..1288495 1 NC_014313.1 KEGG: mes:Meso_1809 condensin subunit ScpA; manually curated; PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1288495 9387151 Hden_1260 Hyphomicrobium denitrificans ATCC 51888 chromosome segregation and condensation protein ScpA YP_003755393.1 1287644 D 582899 CDS YP_003755394.1 300022783 9387152 1288535..1289392 1 NC_014313.1 KEGG: oca:OCAR_6269 chromosome segregation and condensation protein ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; chromosome segregation and condensation protein ScpB 1289392 9387152 Hden_1261 Hyphomicrobium denitrificans ATCC 51888 chromosome segregation and condensation protein ScpB YP_003755394.1 1288535 D 582899 CDS YP_003755395.1 300022784 9387153 1289571..1289780 1 NC_014313.1 KEGG: azc:AZC_1736 twin-arginine translocation protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 1289780 9387153 Hden_1262 Hyphomicrobium denitrificans ATCC 51888 twin-arginine translocation protein, TatA/E family subunit YP_003755395.1 1289571 D 582899 CDS YP_003755396.1 300022785 9387154 1289815..1290198 1 NC_014313.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: bbt:BBta_4416 sec-independent protein secretion pathway component TatB; twin-arginine translocation protein subunit TatB 1290198 9387154 Hden_1263 Hyphomicrobium denitrificans ATCC 51888 twin-arginine translocation protein subunit TatB YP_003755396.1 1289815 D 582899 CDS YP_003755397.1 300022786 9387155 1290202..1291032 1 NC_014313.1 KEGG: mno:Mnod_2185 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1291032 9387155 Hden_1264 Hyphomicrobium denitrificans ATCC 51888 Sec-independent protein translocase subunit TatC YP_003755397.1 1290202 D 582899 CDS YP_003755398.1 300022787 9387156 1291121..1292509 1 NC_014313.1 TIGRFAM: seryl-tRNA synthetase; KEGG: msl:Msil_0586 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1292509 9387156 Hden_1265 Hyphomicrobium denitrificans ATCC 51888 seryl-tRNA synthetase YP_003755398.1 1291121 D 582899 CDS YP_003755399.1 300022788 9387157 1292509..1292760 1 NC_014313.1 KEGG: fgr:FG09636.1 hypothetical protein; hypothetical protein 1292760 9387157 Hden_1266 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755399.1 1292509 D 582899 CDS YP_003755400.1 300022789 9387158 1292762..1293526 1 NC_014313.1 KEGG: pla:Plav_3031 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1293526 9387158 Hden_1267 Hyphomicrobium denitrificans ATCC 51888 stationary-phase survival protein SurE YP_003755400.1 1292762 D 582899 CDS YP_003755401.1 300022790 9387159 1293634..1293768 1 NC_014313.1 hypothetical protein 1293768 9387159 Hden_1268 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755401.1 1293634 D 582899 CDS YP_003755402.1 300022791 9387160 1293811..1295397 1 NC_014313.1 KEGG: rpb:RPB_2736 peptidase M23B; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; peptidase M23 1295397 9387160 Hden_1269 Hyphomicrobium denitrificans ATCC 51888 peptidase M23 YP_003755402.1 1293811 D 582899 CDS YP_003755403.1 300022792 9387161 complement(1295566..1296429) 1 NC_014313.1 PFAM: protein of unknown function DUF815; KEGG: xau:Xaut_4247 hypothetical protein; hypothetical protein 1296429 9387161 Hden_1270 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755403.1 1295566 R 582899 CDS YP_003755404.1 300022793 9387162 1296638..1296973 1 NC_014313.1 KEGG: bhe:BH05640 hypothetical protein; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 1296973 9387162 Hden_1271 Hyphomicrobium denitrificans ATCC 51888 preprotein translocase subunit YajC YP_003755404.1 1296638 D 582899 CDS YP_003755405.1 300022794 9387163 1297061..1298683 1 NC_014313.1 KEGG: rpe:RPE_2907 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 1298683 9387163 Hden_1272 Hyphomicrobium denitrificans ATCC 51888 protein-export membrane protein SecD YP_003755405.1 1297061 D 582899 CDS YP_003755406.1 300022795 9387164 1298696..1299670 1 NC_014313.1 KEGG: pla:Plav_3037 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 1299670 9387164 Hden_1273 Hyphomicrobium denitrificans ATCC 51888 protein-export membrane protein SecF YP_003755406.1 1298696 D 582899 CDS YP_003755407.1 300022796 9387165 1299699..1300073 1 NC_014313.1 PFAM: protein of unknown function DUF498; KEGG: atc:AGR_C_2875 hypothetical protein; hypothetical protein 1300073 9387165 Hden_1274 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755407.1 1299699 D 582899 CDS YP_003755408.1 300022797 9387166 1300096..1300932 1 NC_014313.1 KEGG: met:M446_2494 squalene/phytoene synthase; squalene/phytoene synthase 1300932 9387166 Hden_1275 Hyphomicrobium denitrificans ATCC 51888 squalene/phytoene synthase YP_003755408.1 1300096 D 582899 CDS YP_003755409.1 300022798 9387167 1300966..1303467 1 NC_014313.1 KEGG: nha:Nham_1323 hypothetical protein; hypothetical protein 1303467 9387167 Hden_1276 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755409.1 1300966 D 582899 CDS YP_003755410.1 300022799 9387168 complement(1303464..1304897) 1 NC_014313.1 TIGRFAM: gid protein; KEGG: rpa:RPA2827 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; gid protein 1304897 9387168 Hden_1277 Hyphomicrobium denitrificans ATCC 51888 gid protein YP_003755410.1 1303464 R 582899 CDS YP_003755411.1 300022800 9387169 1304963..1305676 1 NC_014313.1 KEGG: rpd:RPD_3706 hypothetical protein; hypothetical protein 1305676 9387169 Hden_1278 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755411.1 1304963 D 582899 CDS YP_003755412.1 300022801 9387170 complement(1305689..1307059) 1 NC_014313.1 KEGG: rpc:RPC_2648 manganese transporter MntH; TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter NRAMP family 1307059 9387170 Hden_1279 Hyphomicrobium denitrificans ATCC 51888 Mn2+/Fe2+ transporter NRAMP family YP_003755412.1 1305689 R 582899 CDS YP_003755413.1 300022802 9387171 1307408..1308505 1 NC_014313.1 PFAM: protein of unknown function DUF2157, membrane; KEGG: pla:Plav_2660 membrane protein-like protein; hypothetical protein 1308505 9387171 Hden_1280 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755413.1 1307408 D 582899 CDS YP_003755414.1 300022803 9387172 1308502..1309086 1 NC_014313.1 KEGG: bja:bll0405 hypothetical protein; hypothetical protein 1309086 9387172 Hden_1281 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755414.1 1308502 D 582899 CDS YP_003755415.1 300022804 9387173 1309150..1309497 1 NC_014313.1 PFAM: endoribonuclease L-PSP; KEGG: apt:APA01_24200 translation initiation inhibitor YjgF; endoribonuclease L-PSP 1309497 9387173 Hden_1282 Hyphomicrobium denitrificans ATCC 51888 endoribonuclease L-PSP YP_003755415.1 1309150 D 582899 CDS YP_003755416.1 300022805 9387174 1309687..1310037 1 NC_014313.1 KEGG: lel:LELG_03807 hypothetical protein; hypothetical protein 1310037 9387174 Hden_1283 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755416.1 1309687 D 582899 CDS YP_003755417.1 300022806 9387175 complement(1310107..1310988) 1 NC_014313.1 KEGG: hba:Hbal_0306 hypothetical protein; hypothetical protein 1310988 9387175 Hden_1284 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755417.1 1310107 R 582899 CDS YP_003755418.1 300022807 9387176 1311250..1311675 1 NC_014313.1 KEGG: met:M446_0624 VrrB protein; VrrB protein 1311675 9387176 Hden_1285 Hyphomicrobium denitrificans ATCC 51888 VrrB protein YP_003755418.1 1311250 D 582899 CDS YP_003755419.1 300022808 9387177 1311924..1314080 1 NC_014313.1 TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: sme:SMc01780 membrane-bound proton-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 1314080 9387177 Hden_1286 Hyphomicrobium denitrificans ATCC 51888 V-type H(+)-translocating pyrophosphatase YP_003755419.1 1311924 D 582899 CDS YP_003755420.1 300022809 9387178 complement(1314171..1314425) 1 NC_014313.1 KEGG: xcv:XCV2565 hypothetical protein; hypothetical protein 1314425 9387178 Hden_1287 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755420.1 1314171 R 582899 CDS YP_003755421.1 300022810 9387179 complement(1314550..1315038) 1 NC_014313.1 PFAM: SmpA/OmlA domain protein; KEGG: pla:Plav_2919 SmpA/OmlA domain-containing protein; SmpA/OmlA domain-containing protein 1315038 9387179 Hden_1288 Hyphomicrobium denitrificans ATCC 51888 SmpA/OmlA domain-containing protein YP_003755421.1 1314550 R 582899 CDS YP_003755422.1 300022811 9387180 1315191..1315745 1 NC_014313.1 KEGG: xau:Xaut_4382 ubiquinol-cytochrome C chaperone; ubiquinol-cytochrome C chaperone 1315745 9387180 Hden_1289 Hyphomicrobium denitrificans ATCC 51888 ubiquinol-cytochrome C chaperone YP_003755422.1 1315191 D 582899 CDS YP_003755423.1 300022812 9387181 1315742..1316263 1 NC_014313.1 PFAM: protein of unknown function DUF177; KEGG: rpb:RPB_2648 hypothetical protein; hypothetical protein 1316263 9387181 Hden_1290 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755423.1 1315742 D 582899 CDS YP_003755424.1 300022813 9387182 1316416..1317504 1 NC_014313.1 KEGG: oca:OCAR_5875 glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX 1317504 9387182 Hden_1291 Hyphomicrobium denitrificans ATCC 51888 fatty acid/phospholipid synthesis protein PlsX YP_003755424.1 1316416 D 582899 CDS YP_003755425.1 300022814 9387183 1317507..1318487 1 NC_014313.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: pla:Plav_2923 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1318487 9387183 Hden_1292 Hyphomicrobium denitrificans ATCC 51888 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003755425.1 1317507 D 582899 CDS YP_003755426.1 300022815 9387184 1318621..1318926 1 NC_014313.1 TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: mag:amb2355 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha 1318926 9387184 Hden_1293 Hyphomicrobium denitrificans ATCC 51888 integration host factor subunit alpha YP_003755426.1 1318621 D 582899 CDS YP_003755427.1 300022816 9387185 1319009..1319557 1 NC_014313.1 KEGG: oca:OCAR_5878 regulatory protein, MerR; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1319557 9387185 Hden_1294 Hyphomicrobium denitrificans ATCC 51888 MerR family transcriptional regulator YP_003755427.1 1319009 D 582899 CDS YP_003755428.1 300022817 9387186 1319595..1320305 1 NC_014313.1 KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase; phosphopantetheinyl transferase-like protein 1320305 9387186 Hden_1295 Hyphomicrobium denitrificans ATCC 51888 phosphopantetheinyl transferase-like protein YP_003755428.1 1319595 D 582899 CDS YP_003755429.1 300022818 9387187 complement(1320349..1321641) 1 NC_014313.1 KEGG: bra:BRADO2978 signal peptide; hypothetical protein 1321641 9387187 Hden_1296 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755429.1 1320349 R 582899 CDS YP_003755430.1 300022819 9387188 complement(1321654..1323006) 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: bja:bll5532 hypothetical protein; amino acid permease-associated protein 1323006 9387188 Hden_1297 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003755430.1 1321654 R 582899 CDS YP_003755431.1 300022820 9387189 1323321..1324340 1 NC_014313.1 KEGG: bra:BRADO2976 alpha/beta-hydrolase family protein; alpha/beta-hydrolase family protein 1324340 9387189 Hden_1298 Hyphomicrobium denitrificans ATCC 51888 alpha/beta-hydrolase family protein YP_003755431.1 1323321 D 582899 CDS YP_003755432.1 300022821 9387191 complement(1324878..1325279) 1 NC_014313.1 KEGG: cli:Clim_0620 glycine cleavage system H protein; TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage system protein H; glycine cleavage system protein H 1325279 9387191 Hden_1299 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein H YP_003755432.1 1324878 R 582899 CDS YP_003755433.1 300022822 9387192 complement(1325260..1326669) 1 NC_014313.1 KEGG: cdf:CD0723 carbon monoxide dehydrogenase/acetyl-CoA synthase complex, dihydrolipoyl dehydrogenase subunit; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 1326669 9387192 Hden_1300 Hyphomicrobium denitrificans ATCC 51888 dihydrolipoamide dehydrogenase YP_003755433.1 1325260 R 582899 CDS YP_003755434.1 300022823 9387193 complement(1326672..1327211) 1 NC_014313.1 PFAM: OsmC family protein; KEGG: rha:RHA1_ro08941 hypothetical protein; OsmC family protein 1327211 9387193 Hden_1301 Hyphomicrobium denitrificans ATCC 51888 OsmC family protein YP_003755434.1 1326672 R 582899 CDS YP_003755435.1 300022824 9387194 complement(1327315..1327971) 1 NC_014313.1 KEGG: vap:Vapar_2160 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1327971 9387194 Hden_1302 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003755435.1 1327315 R 582899 CDS YP_003755436.1 300022825 9387195 complement(1327961..1329229) 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; KEGG: app:CAP2UW1_2103 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase 1329229 9387195 Hden_1303 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor signal transduction histidine kinase YP_003755436.1 1327961 R 582899 CDS YP_003755437.1 300022826 9387196 1329624..1330889 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2904 major facilitator transporter; major facilitator superfamily protein 1330889 9387196 Hden_1304 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003755437.1 1329624 D 582899 CDS YP_003755438.1 300022827 9387197 complement(1331041..1332867) 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: xau:Xaut_1781 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 1332867 9387197 Hden_1305 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003755438.1 1331041 R 582899 CDS YP_003755439.1 300022828 9387198 1333204..1333524 1 NC_014313.1 KEGG: mrd:Mrad2831_4790 hypothetical protein; hypothetical protein 1333524 9387198 Hden_1306 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755439.1 1333204 D 582899 CDS YP_003755440.1 300022829 9387199 1333690..1334307 1 NC_014313.1 KEGG: bbt:BBta_5941 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1334307 9387199 Hden_1307 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003755440.1 1333690 D 582899 CDS YP_003755441.1 300022830 9387200 1334580..1334987 1 NC_014313.1 SMART: Calcium-binding EF-hand-containing protein; KEGG: mch:Mchl_2189 signal transduction protein with EFhand domain; Calcium-binding EF-hand-containing protein 1334987 9387200 Hden_1308 Hyphomicrobium denitrificans ATCC 51888 Calcium-binding EF-hand-containing protein YP_003755441.1 1334580 D 582899 CDS YP_003755442.1 300022831 9387201 1335175..1335558 1 NC_014313.1 KEGG: msl:Msil_1566 hypothetical protein; hypothetical protein 1335558 9387201 Hden_1309 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755442.1 1335175 D 582899 CDS YP_003755443.1 300022832 9387202 complement(1335578..1335913) 1 NC_014313.1 KEGG: pcs:Pc21g15650 Pc21g15650; hypothetical protein 1335913 9387202 Hden_1310 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755443.1 1335578 R 582899 CDS YP_003755444.1 300022833 9387203 complement(1335935..1336909) 1 NC_014313.1 PFAM: GumN family protein; KEGG: mes:Meso_3402 GumN; GumN family protein 1336909 9387203 Hden_1311 Hyphomicrobium denitrificans ATCC 51888 GumN family protein YP_003755444.1 1335935 R 582899 CDS YP_003755445.1 300022834 9387204 complement(1336941..1337897) 1 NC_014313.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: msl:Msil_0482 40-residue YVTN family beta-propeller repeat protein; 40-residue YVTN family beta-propeller repeat protein 1337897 9387204 Hden_1312 Hyphomicrobium denitrificans ATCC 51888 40-residue YVTN family beta-propeller repeat protein YP_003755445.1 1336941 R 582899 CDS YP_003755446.1 300022835 9387205 complement(1337894..1338436) 1 NC_014313.1 PFAM: polyketide cyclase/dehydrase; KEGG: rpe:RPE_3129 MxaD protein; polyketide cyclase/dehydrase 1338436 9387205 Hden_1313 Hyphomicrobium denitrificans ATCC 51888 polyketide cyclase/dehydrase YP_003755446.1 1337894 R 582899 CDS YP_003755447.1 300022836 9387206 complement(1338440..1339444) 1 NC_014313.1 SMART: von Willebrand factor A; KEGG: rpc:RPC_1916 von Willebrand factor, type A; von Willebrand factor A 1339444 9387206 Hden_1314 Hyphomicrobium denitrificans ATCC 51888 von Willebrand factor A YP_003755447.1 1338440 R 582899 CDS YP_003755448.1 300022837 9387207 complement(1339441..1340019) 1 NC_014313.1 KEGG: rpc:RPC_1915 hypothetical protein; hypothetical protein 1340019 9387207 Hden_1315 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755448.1 1339441 R 582899 CDS YP_003755449.1 300022838 9387208 complement(1340009..1341013) 1 NC_014313.1 KEGG: rpe:RPE_3132 von Willebrand factor, type A; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A 1341013 9387208 Hden_1316 Hyphomicrobium denitrificans ATCC 51888 von Willebrand factor A YP_003755449.1 1340009 R 582899 CDS YP_003755450.1 300022839 9387209 complement(1341010..1341990) 1 NC_014313.1 KEGG: rpc:RPC_1913 MxaA protein; MxaA protein 1341990 9387209 Hden_1317 Hyphomicrobium denitrificans ATCC 51888 MxaA protein YP_003755450.1 1341010 R 582899 CDS YP_003755451.1 300022840 9387210 complement(1341990..1342847) 1 NC_014313.1 KEGG: rpc:RPC_1912 hypothetical protein; hypothetical protein 1342847 9387210 Hden_1318 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755451.1 1341990 R 582899 CDS YP_003755452.1 300022841 9387211 complement(1342844..1343902) 1 NC_014313.1 KEGG: rpc:RPC_1911 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA; ATPase AAA 1343902 9387211 Hden_1319 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003755452.1 1342844 R 582899 CDS YP_003755453.1 300022842 9387212 complement(1344061..1344366) 1 NC_014313.1 PFAM: methanol dehydrogenase subunit beta; KEGG: mpo:Mpop_4629 methanol dehydrogenase subunit beta; methanol dehydrogenase subunit beta 1344366 9387212 Hden_1320 Hyphomicrobium denitrificans ATCC 51888 methanol dehydrogenase subunit beta YP_003755453.1 1344061 R 582899 CDS YP_003755454.1 300022843 9387213 complement(1344467..1345066) 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: mea:Mex_1p4536 cytochrome C-L precursor; cytochrome C class I 1345066 9387213 Hden_1321 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003755454.1 1344467 R 582899 CDS YP_003755455.1 300022844 9387214 complement(1345107..1346018) 1 NC_014313.1 KEGG: rpc:RPC_1908 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1346018 9387214 Hden_1322 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003755455.1 1345107 R 582899 CDS YP_003755456.1 300022845 9387215 complement(1346250..1348139) 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 1348139 9387215 Hden_1323 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003755456.1 1346250 R 582899 CDS YP_003755457.1 300022846 9387216 1348520..1349020 1 NC_014313.1 KEGG: mno:Mnod_8028 hypothetical protein; hypothetical protein 1349020 9387216 Hden_1324 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755457.1 1348520 D 582899 CDS YP_003755458.1 300022847 9387217 1349025..1350497 1 NC_014313.1 manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rpe:RPE_3141 signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 1350497 9387217 Hden_1325 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755458.1 1349025 D 582899 CDS YP_003755459.1 300022848 9387218 1350494..1351144 1 NC_014313.1 KEGG: rpc:RPC_1904 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1351144 9387218 Hden_1326 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003755459.1 1350494 D 582899 CDS YP_003755460.1 300022849 9387219 1351253..1351900 1 NC_014313.1 KEGG: sti:Sthe_2402 hypothetical protein; hypothetical protein 1351900 9387219 Hden_1327 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755460.1 1351253 D 582899 CDS YP_003755461.1 300022850 9387220 complement(1351958..1352407) 1 NC_014313.1 KEGG: app:CAP2UW1_2723 hypothetical protein; hypothetical protein 1352407 9387220 Hden_1328 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755461.1 1351958 R 582899 CDS YP_003755462.1 300022851 9387221 1352656..1352958 1 NC_014313.1 KEGG: dvl:Dvul_0821 calcium-binding EF-hand-containing protein; hypothetical protein 1352958 9387221 Hden_1329 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755462.1 1352656 D 582899 CDS YP_003755463.1 300022852 9387222 1353178..1354167 1 NC_014313.1 SMART: Helix-turn-helix, AraC domain; KEGG: rce:RC1_3211 AraC family transcriptional regulator protein; AraC family transcriptional regulator 1354167 9387222 Hden_1330 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003755463.1 1353178 D 582899 CDS YP_003755464.1 300022853 9387223 1354490..1356991 1 NC_014313.1 KEGG: oca:OCAR_6490 ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; TonB-dependent siderophore receptor 1356991 9387223 Hden_1331 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent siderophore receptor YP_003755464.1 1354490 D 582899 CDS YP_003755465.1 300022854 9387224 1357003..1358151 1 NC_014313.1 PFAM: PepSY-associated TM helix domain protein; KEGG: oca:OCAR_6489 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 1358151 9387224 Hden_1332 Hyphomicrobium denitrificans ATCC 51888 PepSY-associated TM helix domain-containing protein YP_003755465.1 1357003 D 582899 CDS YP_003755466.1 300022855 9387225 1358160..1358357 1 NC_014313.1 KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein 1358357 9387225 Hden_1333 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755466.1 1358160 D 582899 CDS YP_003755467.1 300022856 9387226 complement(1358354..1359106) 1 NC_014313.1 KEGG: mlo:mlr1181 hypothetical protein; hypothetical protein 1359106 9387226 Hden_1334 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755467.1 1358354 R 582899 CDS YP_003755468.1 300022857 9387227 complement(1359090..1360397) 1 NC_014313.1 PFAM: Lycopene beta and epsilon cyclase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bra:BRADO4820 oxidoreductase; NAD(FAD)-dependent dehydrogenases; Lycopene beta and epsilon cyclase 1360397 9387227 Hden_1335 Hyphomicrobium denitrificans ATCC 51888 Lycopene beta and epsilon cyclase YP_003755468.1 1359090 R 582899 CDS YP_003755469.1 300022858 9387228 complement(1360394..1361743) 1 NC_014313.1 KEGG: mxa:MXAN_2357 hypothetical protein; hypothetical protein 1361743 9387228 Hden_1336 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755469.1 1360394 R 582899 CDS YP_003755470.1 300022859 9387229 1362331..1363017 1 NC_014313.1 KEGG: vap:Vapar_3187 hypothetical protein; hypothetical protein 1363017 9387229 Hden_1337 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755470.1 1362331 D 582899 CDS YP_003755471.1 300022860 9387230 1363014..1363970 1 NC_014313.1 KEGG: rba:RB7277 hypothetical protein; hypothetical protein 1363970 9387230 Hden_1338 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755471.1 1363014 D 582899 CDS YP_003755472.1 300022861 9387231 complement(1363982..1364884) 1 NC_014313.1 KEGG: hypothetical protein; PFAM: transcription factor jumonji; SMART: transcription factor jumonji jmjC domain protein; transcription factor jumonji 1364884 9387231 Hden_1339 Hyphomicrobium denitrificans ATCC 51888 transcription factor jumonji YP_003755472.1 1363982 R 582899 CDS YP_003755473.1 300022862 9387232 complement(1365032..1371382) 1 NC_014313.1 KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation protein 1371382 9387232 Hden_1340 Hyphomicrobium denitrificans ATCC 51888 amino acid adenylation protein YP_003755473.1 1365032 R 582899 CDS YP_003755474.1 300022863 9387233 complement(1371387..1376270) 1 NC_014313.1 PFAM: beta-ketoacyl synthase ; phosphopantetheine-binding; acyl transferase; aminotransferase class-III; KEGG: npu:Npun_R6590 beta-ketoacyl synthase; beta-ketoacyl synthase 1376270 9387233 Hden_1341 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003755474.1 1371387 R 582899 CDS YP_003755475.1 300022864 9387234 complement(1376273..1382611) 1 NC_014313.1 KEGG: npu:Npun_R3023 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation protein 1382611 9387234 Hden_1342 Hyphomicrobium denitrificans ATCC 51888 amino acid adenylation protein YP_003755475.1 1376273 R 582899 CDS YP_003755476.1 300022865 9387235 1382778..1383716 1 NC_014313.1 KEGG: bra:BRADO4833 hypothetical protein; hypothetical protein 1383716 9387235 Hden_1343 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755476.1 1382778 D 582899 CDS YP_003755477.1 300022866 9387236 1383713..1384462 1 NC_014313.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: npu:Npun_R2089 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 1384462 9387236 Hden_1344 Hyphomicrobium denitrificans ATCC 51888 4'-phosphopantetheinyl transferase YP_003755477.1 1383713 D 582899 CDS YP_003755478.1 300022867 9387237 complement(1384490..1386085) 1 NC_014313.1 PFAM: polysaccharide biosynthesis protein; KEGG: bra:BRADO4827 polysaccharide transporter; polysaccharide biosynthesis protein 1386085 9387237 Hden_1345 Hyphomicrobium denitrificans ATCC 51888 polysaccharide biosynthesis protein YP_003755478.1 1384490 R 582899 CDS YP_003755479.1 300022868 9387238 1386513..1387523 1 NC_014313.1 PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 glycosyl transferase; family 2 glycosyl transferase 1387523 9387238 Hden_1346 Hyphomicrobium denitrificans ATCC 51888 family 2 glycosyl transferase YP_003755479.1 1386513 D 582899 CDS YP_003755480.1 300022869 9387239 1387507..1388274 1 NC_014313.1 KEGG: swi:Swit_0848 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 1388274 9387239 Hden_1347 Hyphomicrobium denitrificans ATCC 51888 WecB/TagA/CpsF family glycosyl transferase YP_003755480.1 1387507 D 582899 CDS YP_003755481.1 300022870 9387240 complement(1388304..1389209) 1 NC_014313.1 KEGG: smd:Smed_4797 hypothetical protein; hypothetical protein 1389209 9387240 Hden_1348 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755481.1 1388304 R 582899 CDS YP_003755482.1 300022871 9387241 1389337..1391283 1 NC_014313.1 KEGG: bra:BRADO4816 pectin lyase-like (virulence factor-like); pectin lyase-like (virulence factor-like) 1391283 9387241 Hden_1349 Hyphomicrobium denitrificans ATCC 51888 pectin lyase-like (virulence factor-like) YP_003755482.1 1389337 D 582899 CDS YP_003755483.1 300022872 9387242 complement(1391339..1392745) 1 NC_014313.1 PFAM: O-antigen polymerase; KEGG: bra:BRADO4815 exopolysaccharide production protein (ExoQ-like); membrane protein; O-antigen polymerase 1392745 9387242 Hden_1350 Hyphomicrobium denitrificans ATCC 51888 O-antigen polymerase YP_003755483.1 1391339 R 582899 CDS YP_003755484.1 300022873 9387243 complement(1392860..1394005) 1 NC_014313.1 PFAM: acyltransferase 3; KEGG: psl:Psta_3769 acyltransferase 3; acyltransferase 3 1394005 9387243 Hden_1351 Hyphomicrobium denitrificans ATCC 51888 acyltransferase 3 YP_003755484.1 1392860 R 582899 CDS YP_003755485.1 300022874 9387244 complement(1394037..1395281) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: bra:BRADO4826 glycosyltransferase (group 1); group 1 glycosyl transferase 1395281 9387244 Hden_1352 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003755485.1 1394037 R 582899 CDS YP_003755486.1 300022875 9387245 1395391..1395519 1 NC_014313.1 hypothetical protein 1395519 9387245 Hden_1353 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755486.1 1395391 D 582899 CDS YP_003755487.1 300022876 9387246 1395674..1397773 1 NC_014313.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: bid:Bind_2762 lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1397773 9387246 Hden_1354 Hyphomicrobium denitrificans ATCC 51888 lipopolysaccharide biosynthesis protein YP_003755487.1 1395674 D 582899 CDS YP_003755488.1 300022877 9387247 1398005..1399366 1 NC_014313.1 KEGG: ret:RHE_CH03235 exopolysaccharide export protein; manually curated; PFAM: polysaccharide export protein; polysaccharide export protein 1399366 9387247 Hden_1355 Hyphomicrobium denitrificans ATCC 51888 polysaccharide export protein YP_003755488.1 1398005 D 582899 CDS YP_003755489.1 300022878 9387248 1399655..1401595 1 NC_014313.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: bra:BRADO4822 asparagine synthetase; PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 1401595 9387248 Hden_1356 Hyphomicrobium denitrificans ATCC 51888 asparagine synthase YP_003755489.1 1399655 D 582899 CDS YP_003755490.1 300022879 9387249 complement(1401694..1403142) 1 NC_014313.1 KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 1403142 9387249 Hden_1357 Hyphomicrobium denitrificans ATCC 51888 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase YP_003755490.1 1401694 R 582899 CDS YP_003755491.1 300022880 9387250 complement(1403465..1404280) 1 NC_014313.1 KEGG: azc:AZC_0483 trehalose-6-phosphate phophatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; trehalose-phosphatase 1404280 9387250 Hden_1358 Hyphomicrobium denitrificans ATCC 51888 trehalose-phosphatase YP_003755491.1 1403465 R 582899 CDS YP_003755492.1 300022881 9387251 complement(1404292..1405392) 1 NC_014313.1 PFAM: PfkB domain protein; KEGG: fph:Fphi_1482 ribokinase; PfkB domain-containing protein 1405392 9387251 Hden_1359 Hyphomicrobium denitrificans ATCC 51888 PfkB domain-containing protein YP_003755492.1 1404292 R 582899 CDS YP_003755493.1 300022882 9387252 complement(1405389..1406195) 1 NC_014313.1 PFAM: ROK family protein; KEGG: bph:Bphy_2399 ROK family protein; ROK family protein 1406195 9387252 Hden_1360 Hyphomicrobium denitrificans ATCC 51888 ROK family protein YP_003755493.1 1405389 R 582899 CDS YP_003755494.1 300022883 9387253 complement(1406195..1407655) 1 NC_014313.1 KEGG: mes:Meso_1527 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase 1407655 9387253 Hden_1361 Hyphomicrobium denitrificans ATCC 51888 alpha,alpha-trehalose-phosphate synthase YP_003755494.1 1406195 R 582899 CDS YP_003755495.1 300022884 9387254 1407979..1409052 1 NC_014313.1 PFAM: HWE histidine kinase; KEGG: hne:HNE_0423 sensor histidine kinase; signal transduction histidine kinase 1409052 9387254 Hden_1362 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003755495.1 1407979 D 582899 CDS YP_003755496.1 300022885 9387255 complement(1409053..1410936) 1 NC_014313.1 PFAM: glycoside hydrolase 15-related; KEGG: nwi:Nwi_3025 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 1410936 9387255 Hden_1363 Hyphomicrobium denitrificans ATCC 51888 glycoside hydrolase 15-like protein YP_003755496.1 1409053 R 582899 CDS YP_003755497.1 300022886 9387256 complement(1411061..1412986) 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; response regulator receiver; PAS fold-3 domain protein; KEGG: bja:bll2598 two-component response regulator; SMART: response regulator receiver; signal transduction histidine kinase 1412986 9387256 Hden_1364 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003755497.1 1411061 R 582899 CDS YP_003755498.1 300022887 9387257 complement(1413000..1418693) 1 NC_014313.1 KEGG: bja:bll2599 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; GAF sensor hybrid histidine kinase 1418693 9387257 Hden_1365 Hyphomicrobium denitrificans ATCC 51888 GAF sensor hybrid histidine kinase YP_003755498.1 1413000 R 582899 CDS YP_003755499.1 300022888 9387258 complement(1418879..1419436) 1 NC_014313.1 KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; ECF subfamily RNA polymerase sigma-24 subunit 1419436 9387258 Hden_1366 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003755499.1 1418879 R 582899 CDS YP_003755500.1 300022889 9387259 complement(1419433..1419636) 1 NC_014313.1 KEGG: gdj:Gdia_1254 hypothetical protein; hypothetical protein 1419636 9387259 Hden_1367 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755500.1 1419433 R 582899 CDS YP_003755501.1 300022890 9387260 1419890..1420693 1 NC_014313.1 KEGG: swi:Swit_3925 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1420693 9387260 Hden_1368 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003755501.1 1419890 D 582899 CDS YP_003755502.1 300022891 9387261 complement(1420729..1422924) 1 NC_014313.1 PFAM: Amylo-alpha-16-glucosidase; KEGG: nwi:Nwi_0328 amylo-alpha-1,6-glucosidase; Amylo-alpha-16-glucosidase 1422924 9387261 Hden_1369 Hyphomicrobium denitrificans ATCC 51888 Amylo-alpha-16-glucosidase YP_003755502.1 1420729 R 582899 CDS YP_003755503.1 300022892 9387262 complement(1422994..1424088) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: bid:Bind_1230 glycosyl transferase group 1; group 1 glycosyl transferase 1424088 9387262 Hden_1370 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003755503.1 1422994 R 582899 CDS YP_003755504.1 300022893 9387263 1424439..1425455 1 NC_014313.1 KEGG: rpe:RPE_2821 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1425455 9387263 Hden_1371 Hyphomicrobium denitrificans ATCC 51888 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_003755504.1 1424439 D 582899 CDS YP_003755505.1 300022894 9387264 complement(1425476..1425793) 1 NC_014313.1 KEGG: rpb:RPB_4114 hypothetical protein; hypothetical protein 1425793 9387264 Hden_1372 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755505.1 1425476 R 582899 CDS YP_003755506.1 300022895 9387265 complement(1425800..1426336) 1 NC_014313.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: dds:Ddes_0538 superoxide dismutase copper/zinc binding; superoxide dismutase copper/zinc binding protein 1426336 9387265 Hden_1373 Hyphomicrobium denitrificans ATCC 51888 superoxide dismutase copper/zinc binding protein YP_003755506.1 1425800 R 582899 CDS YP_003755507.1 300022896 9387266 complement(1426366..1426737) 1 NC_014313.1 KEGG: sus:acid_1393 fis family transcriptional regulator; hypothetical protein 1426737 9387266 Hden_1374 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755507.1 1426366 R 582899 CDS YP_003755508.1 300022897 9387267 1427032..1427556 1 NC_014313.1 PFAM: polyketide cyclase/dehydrase; KEGG: msl:Msil_2543 hypothetical protein; polyketide cyclase/dehydrase 1427556 9387267 Hden_1375 Hyphomicrobium denitrificans ATCC 51888 polyketide cyclase/dehydrase YP_003755508.1 1427032 D 582899 CDS YP_003755509.1 300022898 9387268 complement(1427638..1428255) 1 NC_014313.1 KEGG: msl:Msil_3144 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1428255 9387268 Hden_1376 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003755509.1 1427638 R 582899 CDS YP_003755510.1 300022899 9387269 complement(1428252..1429616) 1 NC_014313.1 KEGG: msl:Msil_3151 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase 1429616 9387269 Hden_1377 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755510.1 1428252 R 582899 CDS YP_003755511.1 300022900 9387270 complement(1429803..1431239) 1 NC_014313.1 KEGG: oan:Oant_2510 hypothetical protein; hypothetical protein 1431239 9387270 Hden_1378 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755511.1 1429803 R 582899 CDS YP_003755512.1 300022901 9387271 complement(1431289..1432815) 1 NC_014313.1 KEGG: mno:Mnod_5211 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 1432815 9387271 Hden_1379 Hyphomicrobium denitrificans ATCC 51888 undecaprenyl-phosphate glucose phosphotransferase YP_003755512.1 1431289 R 582899 CDS YP_003755513.1 300022902 9387272 complement(1432889..1434043) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: mpo:Mpop_1808 glycosyl transferase group 1; group 1 glycosyl transferase 1434043 9387272 Hden_1380 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003755513.1 1432889 R 582899 CDS YP_003755514.1 300022903 9387273 complement(1434098..1434772) 1 NC_014313.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: nwi:Nwi_1414 polysaccharide export protein; polysaccharide export protein 1434772 9387273 Hden_1381 Hyphomicrobium denitrificans ATCC 51888 polysaccharide export protein YP_003755514.1 1434098 R 582899 CDS YP_003755515.1 300022904 9387274 1434870..1437182 1 NC_014313.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: rpe:RPE_2845 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 1437182 9387274 Hden_1382 Hyphomicrobium denitrificans ATCC 51888 lipopolysaccharide biosynthesis protein YP_003755515.1 1434870 D 582899 CDS YP_003755516.1 300022905 9387275 1437213..1438337 1 NC_014313.1 PFAM: polysaccharide deacetylase; KEGG: pla:Plav_2994 polysaccharide deacetylase; polysaccharide deacetylase 1438337 9387275 Hden_1383 Hyphomicrobium denitrificans ATCC 51888 polysaccharide deacetylase YP_003755516.1 1437213 D 582899 CDS YP_003755517.1 300022906 9387276 complement(1438306..1438515) 1 NC_014313.1 KEGG: oca:OCAR_5889 hypothetical protein; hypothetical protein 1438515 9387276 Hden_1384 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755517.1 1438306 R 582899 CDS YP_003755518.1 300022907 9387277 1438633..1439718 1 NC_014313.1 PFAM: cytochrome oxidase assembly; KEGG: oan:Oant_2502 cytochrome oxidase assembly; cytochrome oxidase assembly 1439718 9387277 Hden_1385 Hyphomicrobium denitrificans ATCC 51888 cytochrome oxidase assembly YP_003755518.1 1438633 D 582899 CDS YP_003755519.1 300022908 9387278 complement(1439777..1440727) 1 NC_014313.1 SMART: semialdehyde dehydrogenase NAD - binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: rpa:RPA2491 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; N-acetyl-gamma-glutamyl-phosphate reductase 1440727 9387278 Hden_1386 Hyphomicrobium denitrificans ATCC 51888 N-acetyl-gamma-glutamyl-phosphate reductase YP_003755519.1 1439777 R 582899 CDS YP_003755520.1 300022909 9387279 complement(1440729..1441484) 1 NC_014313.1 PFAM: integral membrane protein TerC; KEGG: rpe:RPE_4103 integral membrane protein TerC; integral membrane protein TerC 1441484 9387279 Hden_1387 Hyphomicrobium denitrificans ATCC 51888 integral membrane protein TerC YP_003755520.1 1440729 R 582899 CDS YP_003755521.1 300022910 9387280 complement(1441651..1442130) 1 NC_014313.1 PFAM: ribosomal protein S9; KEGG: oan:Oant_2496 30S ribosomal protein S9; 30S ribosomal protein S9 1442130 9387280 Hden_1388 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S9 YP_003755521.1 1441651 R 582899 CDS YP_003755522.1 300022911 9387281 complement(1442135..1442596) 1 NC_014313.1 KEGG: xau:Xaut_4344 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 1442596 9387281 Hden_1389 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L13 YP_003755522.1 1442135 R 582899 CDS YP_003755523.1 300022912 9387282 complement(1442819..1443364) 1 NC_014313.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xau:Xaut_3191 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 1443364 9387282 Hden_1390 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755523.1 1442819 R 582899 CDS YP_003755524.1 300022913 9387283 1443601..1444197 1 NC_014313.1 KEGG: oca:OCAR_4785 exported protein of unknown function; hypothetical protein 1444197 9387283 Hden_1391 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755524.1 1443601 D 582899 CDS YP_003755525.1 300022914 9387284 1444251..1445066 1 NC_014313.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: rpt:Rpal_3104 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1445066 9387284 Hden_1392 Hyphomicrobium denitrificans ATCC 51888 enoyl-CoA hydratase/isomerase YP_003755525.1 1444251 D 582899 CDS YP_003755526.1 300022915 9387285 1445068..1445502 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dar:Daro_3011 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1445502 9387285 Hden_1393 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003755526.1 1445068 D 582899 CDS YP_003755527.1 300022916 9387286 1445499..1445936 1 NC_014313.1 KEGG: ddc:Dd586_2991 CoA-binding protein; PFAM: CoA-binding protein; SMART: CoA-binding protein; CoA-binding protein 1445936 9387286 Hden_1394 Hyphomicrobium denitrificans ATCC 51888 CoA-binding protein YP_003755527.1 1445499 D 582899 CDS YP_003755528.1 300022917 9387287 1446139..1446780 1 NC_014313.1 KEGG: ace:Acel_1272 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; PFAM: GTP cyclohydrolase II; GTP cyclohydrolase II 1446780 9387287 Hden_1395 Hyphomicrobium denitrificans ATCC 51888 GTP cyclohydrolase II YP_003755528.1 1446139 D 582899 CDS YP_003755529.1 300022918 9387288 1446934..1447449 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO4697 acetyltransferase; GCN5-like N-acetyltransferase 1447449 9387288 Hden_1396 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003755529.1 1446934 D 582899 CDS YP_003755530.1 300022919 9387289 1447446..1449065 1 NC_014313.1 KEGG: bra:BRADO4696 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; 2-isopropylmalate synthase/homocitrate synthase family protein 1449065 9387289 Hden_1397 Hyphomicrobium denitrificans ATCC 51888 2-isopropylmalate synthase/homocitrate synthase family protein YP_003755530.1 1447446 D 582899 CDS YP_003755531.1 300022920 9387290 complement(1449088..1449327) 1 NC_014313.1 KEGG: avi:Avi_2021 hypothetical protein; hypothetical protein 1449327 9387290 Hden_1398 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755531.1 1449088 R 582899 CDS YP_003755532.1 300022921 9387291 complement(1449412..1449735) 1 NC_014313.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: bra:BRADO3181 sulfur oxidation protein (SoxZ); sulfur oxidation protein SoxZ 1449735 9387291 Hden_1399 Hyphomicrobium denitrificans ATCC 51888 sulfur oxidation protein SoxZ YP_003755532.1 1449412 R 582899 CDS YP_003755533.1 300022922 9387292 complement(1449746..1450231) 1 NC_014313.1 KEGG: tdn:Suden_0261 thiosulfate-binding protein SoxY; thiosulfate-binding protein SoxY 1450231 9387292 Hden_1400 Hyphomicrobium denitrificans ATCC 51888 thiosulfate-binding protein SoxY YP_003755533.1 1449746 R 582899 CDS YP_003755534.1 300022923 9387293 1450389..1451705 1 NC_014313.1 PFAM: Flavocytochrome C sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; Flavocytochrome C sulfide dehydrogenase flavin-binding protein 1451705 9387293 Hden_1401 Hyphomicrobium denitrificans ATCC 51888 Flavocytochrome C sulfide dehydrogenase flavin-binding protein YP_003755534.1 1450389 D 582899 CDS YP_003755535.1 300022924 9387294 1451944..1454445 1 NC_014313.1 PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: slt:Slit_1861 protein of unknown function DUF1974; hypothetical protein 1454445 9387294 Hden_1402 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755535.1 1451944 D 582899 CDS YP_003755536.1 300022925 9387295 1454454..1456469 1 NC_014313.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; enoyl-CoA hydratase/isomerase; KEGG: nha:Nham_1087 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 1456469 9387295 Hden_1403 Hyphomicrobium denitrificans ATCC 51888 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_003755536.1 1454454 D 582899 CDS YP_003755537.1 300022926 9387296 1456521..1457825 1 NC_014313.1 KEGG: pfs:PFLU0655 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 1457825 9387296 Hden_1404 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA acetyltransferase YP_003755537.1 1456521 D 582899 CDS YP_003755538.1 300022927 9387297 1457905..1459212 1 NC_014313.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: mlo:mll4091 fatty acid synthase, cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase 1459212 9387297 Hden_1405 Hyphomicrobium denitrificans ATCC 51888 Cyclopropane-fatty-acyl-phospholipid synthase YP_003755538.1 1457905 D 582899 CDS YP_003755539.1 300022928 9387298 complement(1459239..1461020) 1 NC_014313.1 TIGRFAM: glucan exporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: atc:AGR_C_4944 beta-(1-->2)glucan export ATP-binding protein ChvA (attachment protein); SMART: ATPase AAA; glucan exporter ATP-binding protein 1461020 9387298 Hden_1406 Hyphomicrobium denitrificans ATCC 51888 glucan exporter ATP-binding protein YP_003755539.1 1459239 R 582899 CDS YP_003755540.1 300022929 9387299 1461235..1461840 1 NC_014313.1 PFAM: cytochrome B561; KEGG: bxe:Bxe_B2745 cytochrome b561; cytochrome B561 1461840 9387299 Hden_1407 Hyphomicrobium denitrificans ATCC 51888 cytochrome B561 YP_003755540.1 1461235 D 582899 CDS YP_003755541.1 300022930 9387300 complement(1461858..1462694) 1 NC_014313.1 KEGG: mno:Mnod_4661 hypothetical protein; hypothetical protein 1462694 9387300 Hden_1408 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755541.1 1461858 R 582899 CDS YP_003755542.1 300022931 9387301 complement(1462691..1463737) 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_4662 glycosyl transferase group 1; group 1 glycosyl transferase 1463737 9387301 Hden_1409 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003755542.1 1462691 R 582899 CDS YP_003755543.1 300022932 9387302 complement(1463730..1464134) 1 NC_014313.1 KEGG: azc:AZC_4167 hypothetical protein; hypothetical protein 1464134 9387302 Hden_1410 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755543.1 1463730 R 582899 CDS YP_003755544.1 300022933 9387303 complement(1464159..1465184) 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: xau:Xaut_2316 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 1465184 9387303 Hden_1411 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003755544.1 1464159 R 582899 CDS YP_003755545.1 300022934 9387304 1465205..1467016 1 NC_014313.1 KEGG: xau:Xaut_2317 glucosyltransferase MdoH; glucosyltransferase MdoH 1467016 9387304 Hden_1412 Hyphomicrobium denitrificans ATCC 51888 glucosyltransferase MdoH YP_003755545.1 1465205 D 582899 CDS YP_003755546.1 300022935 9387305 1467006..1467767 1 NC_014313.1 TIGRFAM: methyltransferase FkbM family; KEGG: mno:Mnod_5570 methyltransferase FkbM family; FkbM family methyltransferase 1467767 9387305 Hden_1413 Hyphomicrobium denitrificans ATCC 51888 FkbM family methyltransferase YP_003755546.1 1467006 D 582899 CDS YP_003755547.1 300022936 9387306 1467800..1468807 1 NC_014313.1 KEGG: azc:AZC_3949 hypothetical protein; hypothetical protein 1468807 9387306 Hden_1414 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755547.1 1467800 D 582899 CDS YP_003755548.1 300022937 9387307 complement(1468836..1469789) 1 NC_014313.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; KEGG: azc:AZC_0099 HAD-superfamily hydrolase; HAD-superfamily hydrolase-like protein 1469789 9387307 Hden_1415 Hyphomicrobium denitrificans ATCC 51888 HAD-superfamily hydrolase-like protein YP_003755548.1 1468836 R 582899 CDS YP_003755549.1 300022938 9387308 1470084..1470461 1 NC_014313.1 KEGG: bay:RBAM_034190 polar chromosome segregation protein; hypothetical protein 1470461 9387308 Hden_1416 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755549.1 1470084 D 582899 CDS YP_003755550.1 300022939 9387309 complement(1470548..1470964) 1 NC_014313.1 KEGG: mch:Mchl_4298 dihydrofolate reductase; dihydrofolate reductase 1470964 9387309 Hden_1417 Hyphomicrobium denitrificans ATCC 51888 dihydrofolate reductase YP_003755550.1 1470548 R 582899 CDS YP_003755551.1 300022940 9387310 1471230..1471760 1 NC_014313.1 KEGG: msl:Msil_1586 cytochrome C protein; cytochrome C protein 1471760 9387310 Hden_1418 Hyphomicrobium denitrificans ATCC 51888 cytochrome C protein YP_003755551.1 1471230 D 582899 CDS YP_003755552.1 300022941 9387311 complement(1471783..1473207) 1 NC_014313.1 PFAM: aldehyde dehydrogenase; KEGG: bid:Bind_0016 aldehyde dehydrogenase; aldehyde dehydrogenase 1473207 9387311 Hden_1419 Hyphomicrobium denitrificans ATCC 51888 aldehyde dehydrogenase YP_003755552.1 1471783 R 582899 CDS YP_003755553.1 300022942 9387312 complement(1473515..1474753) 1 NC_014313.1 KEGG: pna:Pnap_3729 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1474753 9387312 Hden_1420 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003755553.1 1473515 R 582899 CDS YP_003755554.1 300022943 9387313 complement(1474734..1477379) 1 NC_014313.1 KEGG: mxa:MXAN_2606 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase 1477379 9387313 Hden_1421 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor hybrid histidine kinase YP_003755554.1 1474734 R 582899 CDS YP_003755555.1 300022944 9387314 complement(1477384..1478781) 1 NC_014313.1 KEGG: reh:H16_A3120 SAM-dependent methyltransferase; SAM-dependent methyltransferase 1478781 9387314 Hden_1422 Hyphomicrobium denitrificans ATCC 51888 SAM-dependent methyltransferase YP_003755555.1 1477384 R 582899 CDS YP_003755556.1 300022945 9387315 complement(1478890..1480041) 1 NC_014313.1 KEGG: rme:Rmet_2949 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1480041 9387315 Hden_1423 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003755556.1 1478890 R 582899 CDS YP_003755557.1 300022946 9387316 complement(1480249..1481649) 1 NC_014313.1 KEGG: xau:Xaut_1939 glutamate--putrescine ligase; PFAM: glutamine synthetase; glutamate--putrescine ligase 1481649 9387316 Hden_1424 Hyphomicrobium denitrificans ATCC 51888 glutamate--putrescine ligase YP_003755557.1 1480249 R 582899 CDS YP_003755558.1 300022947 9387317 1482126..1483238 1 NC_014313.1 PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr6533 ABC transporter polyamine transporter, periplasmic protein; family 1 extracellular solute-binding protein 1483238 9387317 Hden_1425 Hyphomicrobium denitrificans ATCC 51888 family 1 extracellular solute-binding protein YP_003755558.1 1482126 D 582899 CDS YP_003755559.1 300022948 9387318 1483336..1484532 1 NC_014313.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain protein; KEGG: atc:AGR_C_1086 polyamine transporter PotG; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1484532 9387318 Hden_1426 Hyphomicrobium denitrificans ATCC 51888 spermidine/putrescine ABC transporter ATPase YP_003755559.1 1483336 D 582899 CDS YP_003755560.1 300022949 9387319 1484542..1485447 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mes:Meso_0165 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 1485447 9387319 Hden_1427 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003755560.1 1484542 D 582899 CDS YP_003755561.1 300022950 9387320 1485444..1486268 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mes:Meso_0166 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 1486268 9387320 Hden_1428 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003755561.1 1485444 D 582899 CDS YP_003755562.1 300022951 9387321 1486324..1487610 1 NC_014313.1 PFAM: FAD dependent oxidoreductase; KEGG: sbl:Sbal_2421 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1487610 9387321 Hden_1429 Hyphomicrobium denitrificans ATCC 51888 FAD dependent oxidoreductase YP_003755562.1 1486324 D 582899 CDS YP_003755563.1 300022952 9387322 complement(1487893..1488534) 1 NC_014313.1 PFAM: protein of unknown function DUF1109; KEGG: ara:Arad_4851 hypothetical protein; hypothetical protein 1488534 9387322 Hden_1430 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755563.1 1487893 R 582899 CDS YP_003755564.1 300022953 9387323 complement(1488531..1489088) 1 NC_014313.1 manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: rpt:Rpal_2016 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 1489088 9387323 Hden_1431 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003755564.1 1488531 R 582899 CDS YP_003755565.1 300022954 9387324 complement(1489221..1489607) 1 NC_014313.1 KEGG: rde:RD1_2328 hypothetical protein; hypothetical protein 1489607 9387324 Hden_1432 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755565.1 1489221 R 582899 CDS YP_003755566.1 300022955 9387325 complement(1489828..1491960) 1 NC_014313.1 PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: msl:Msil_2953 formate dehydrogenase; molybdopterin dinucleotide-binding region 1491960 9387325 Hden_1433 Hyphomicrobium denitrificans ATCC 51888 molybdopterin dinucleotide-binding region YP_003755566.1 1489828 R 582899 CDS YP_003755567.1 300022956 9387326 1492189..1492563 1 NC_014313.1 KEGG: saz:Sama_2843 hypothetical protein; hypothetical protein 1492563 9387326 Hden_1434 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755567.1 1492189 D 582899 CDS YP_003755568.1 300022957 9387327 complement(1492635..1493705) 1 NC_014313.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: xau:Xaut_3908 lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; lysine 2,3-aminomutase YodO family protein 1493705 9387327 Hden_1435 Hyphomicrobium denitrificans ATCC 51888 lysine 2,3-aminomutase YodO family protein YP_003755568.1 1492635 R 582899 CDS YP_003755569.1 300022958 9387328 complement(1493702..1494187) 1 NC_014313.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mes:Meso_0968 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1494187 9387328 Hden_1436 Hyphomicrobium denitrificans ATCC 51888 glutathione-dependent formaldehyde-activating protein YP_003755569.1 1493702 R 582899 CDS YP_003755570.1 300022959 9387329 complement(1494250..1495299) 1 NC_014313.1 manually curated; KEGG: cak:Caul_0762 lysine--tRNA ligase; PFAM: tRNA synthetase class II (D K and N); lysine--tRNA ligase 1495299 9387329 Hden_1437 Hyphomicrobium denitrificans ATCC 51888 lysine--tRNA ligase YP_003755570.1 1494250 R 582899 CDS YP_003755571.1 300022960 9387330 1495454..1496023 1 NC_014313.1 KEGG: xau:Xaut_2531 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; translation elongation factor P 1496023 9387330 Hden_1438 Hyphomicrobium denitrificans ATCC 51888 translation elongation factor P YP_003755571.1 1495454 D 582899 CDS YP_003755572.1 300022961 9387331 complement(1496075..1497286) 1 NC_014313.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: mno:Mnod_5578 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain; molybdenum cofactor synthesis protein 1497286 9387331 Hden_1439 Hyphomicrobium denitrificans ATCC 51888 molybdenum cofactor synthesis protein YP_003755572.1 1496075 R 582899 CDS YP_003755573.1 300022962 9387332 complement(1497291..1497785) 1 NC_014313.1 KEGG: azc:AZC_2203 molybdopterin cofactor biosynthesis protein; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C 1497785 9387332 Hden_1440 Hyphomicrobium denitrificans ATCC 51888 molybdenum cofactor biosynthesis protein C YP_003755573.1 1497291 R 582899 CDS YP_003755574.1 300022963 9387333 complement(1497782..1498585) 1 NC_014313.1 KEGG: xau:Xaut_4375 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase 1498585 9387333 Hden_1441 Hyphomicrobium denitrificans ATCC 51888 indole-3-glycerol-phosphate synthase YP_003755574.1 1497782 R 582899 CDS YP_003755575.1 300022964 9387334 complement(1498589..1499647) 1 NC_014313.1 TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: rpt:Rpal_3235 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 1499647 9387334 Hden_1442 Hyphomicrobium denitrificans ATCC 51888 anthranilate phosphoribosyltransferase YP_003755575.1 1498589 R 582899 CDS YP_003755576.1 300022965 9387335 complement(1499650..1500246) 1 NC_014313.1 KEGG: xau:Xaut_4377 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase 1500246 9387335 Hden_1443 Hyphomicrobium denitrificans ATCC 51888 glutamine amidotransferase YP_003755576.1 1499650 R 582899 CDS YP_003755577.1 300022966 9387336 complement(1500371..1500889) 1 NC_014313.1 KEGG: sme:SMc03822 hypothetical protein; PFAM: phosphoglycerate mutase; SMART: phosphoglycerate mutase; phosphohistidine phosphatase SixA 1500889 9387336 Hden_1444 Hyphomicrobium denitrificans ATCC 51888 phosphohistidine phosphatase SixA YP_003755577.1 1500371 R 582899 CDS YP_003755578.1 300022967 9387337 1501001..1501402 1 NC_014313.1 KEGG: hms:HMU02670 serine transporter; hypothetical protein 1501402 9387337 Hden_1445 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755578.1 1501001 D 582899 CDS YP_003755579.1 300022968 9387338 complement(1501428..1503044) 1 NC_014313.1 TIGRFAM: anthranilate synthase component I; KEGG: xau:Xaut_4378 anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; anthranilate synthase component I 1503044 9387338 Hden_1446 Hyphomicrobium denitrificans ATCC 51888 anthranilate synthase component I YP_003755579.1 1501428 R 582899 CDS YP_003755580.1 300022969 9387339 complement(1503050..1504936) 1 NC_014313.1 KEGG: rpt:Rpal_3234 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1504936 9387339 Hden_1447 Hyphomicrobium denitrificans ATCC 51888 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003755580.1 1503050 R 582899 CDS YP_003755581.1 300022970 9387340 1505151..1505927 1 NC_014313.1 TIGRFAM: triosephosphate isomerase; KEGG: pla:Plav_3166 triose-phosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1505927 9387340 Hden_1448 Hyphomicrobium denitrificans ATCC 51888 triosephosphate isomerase YP_003755581.1 1505151 D 582899 CDS YP_003755582.1 300022971 9387341 1505927..1506568 1 NC_014313.1 KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; hypothetical protein 1506568 9387341 Hden_1449 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755582.1 1505927 D 582899 CDS YP_003755583.1 300022972 9387342 1506565..1506711 1 NC_014313.1 hypothetical protein 1506711 9387342 Hden_1450 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755583.1 1506565 D 582899 CDS YP_003755584.1 300022973 9387343 1506678..1507055 1 NC_014313.1 KEGG: rpe:RPE_2594 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1507055 9387343 Hden_1451 Hyphomicrobium denitrificans ATCC 51888 preprotein translocase subunit SecG YP_003755584.1 1506678 D 582899 CDS YP_003755585.1 300022974 9387344 1507168..1507758 1 NC_014313.1 KEGG: bra:BRADO1438 signal peptide; hypothetical protein 1507758 9387344 Hden_1452 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755585.1 1507168 D 582899 CDS YP_003755586.1 300022975 9387345 1507869..1509497 1 NC_014313.1 TIGRFAM: CTP synthase; KEGG: mes:Meso_1634 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 1509497 9387345 Hden_1453 Hyphomicrobium denitrificans ATCC 51888 CTP synthase YP_003755586.1 1507869 D 582899 CDS YP_003755587.1 300022976 9387346 complement(1509613..1509870) 1 NC_014313.1 KEGG: cytochrome b561; hypothetical protein 1509870 9387346 Hden_1454 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755587.1 1509613 R 582899 CDS YP_003755588.1 300022977 9387347 1510357..1511280 1 NC_014313.1 KEGG: rpt:Rpal_3223 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1511280 9387347 Hden_1455 Hyphomicrobium denitrificans ATCC 51888 2-dehydro-3-deoxyphosphooctonate aldolase YP_003755588.1 1510357 D 582899 CDS YP_003755589.1 300022978 9387348 complement(1511451..1511693) 1 NC_014313.1 KEGG: FAD linked oxidase C-terminal domain protein; hypothetical protein 1511693 9387348 Hden_1456 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755589.1 1511451 R 582899 CDS YP_003755590.1 300022979 9387349 complement(1512118..1512798) 1 NC_014313.1 KEGG: mpo:Mpop_1803 hypothetical protein; hypothetical protein 1512798 9387349 Hden_1457 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755590.1 1512118 R 582899 CDS YP_003755591.1 300022980 9387350 complement(1512810..1513820) 1 NC_014313.1 PFAM: ABC transporter; KEGG: bja:blr6191 ABC transporter permease; ABC transporter 1513820 9387350 Hden_1458 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755591.1 1512810 R 582899 CDS YP_003755592.1 300022981 9387351 complement(1513820..1514617) 1 NC_014313.1 KEGG: bbt:BBta_5947 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 1514617 9387351 Hden_1459 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755592.1 1513820 R 582899 CDS YP_003755593.1 300022982 9387352 complement(1514648..1515631) 1 NC_014313.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; aldehyde dehydrogenase; KEGG: mno:Mnod_5316 40-residue YVTN family beta-propeller repeat protein; SMART: hypothetical protein; 40-residue YVTN family beta-propeller repeat protein 1515631 9387352 Hden_1460 Hyphomicrobium denitrificans ATCC 51888 40-residue YVTN family beta-propeller repeat protein YP_003755593.1 1514648 R 582899 CDS YP_003755594.1 300022983 9387353 complement(1515700..1516956) 1 NC_014313.1 KEGG: bra:BRADO5462 hypothetical protein; hypothetical protein 1516956 9387353 Hden_1461 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755594.1 1515700 R 582899 CDS YP_003755595.1 300022984 9387354 1517319..1517825 1 NC_014313.1 KEGG: met:M446_5014 hypothetical protein; hypothetical protein 1517825 9387354 Hden_1462 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755595.1 1517319 D 582899 CDS YP_003755596.1 300022985 9387355 1517822..1518802 1 NC_014313.1 PFAM: NMT1/THI5 like domain protein; KEGG: azl:AZL_a05750 ABC transporter substrate-binding protein; NMT1/THI5 like domain-containing protein 1518802 9387355 Hden_1463 Hyphomicrobium denitrificans ATCC 51888 NMT1/THI5 like domain-containing protein YP_003755596.1 1517822 D 582899 CDS YP_003755597.1 300022986 9387356 1518765..1519574 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: psa:PST_2932 sulfonate ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1519574 9387356 Hden_1464 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003755597.1 1518765 D 582899 CDS YP_003755598.1 300022987 9387357 1519571..1520302 1 NC_014313.1 KEGG: azl:AZL_a05770 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 1520302 9387357 Hden_1465 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755598.1 1519571 D 582899 CDS YP_003755599.1 300022988 9387358 1520343..1521080 1 NC_014313.1 PFAM: protein of unknown function DUF556; KEGG: rcu:RCOM_0113510 hypothetical protein; hypothetical protein 1521080 9387358 Hden_1466 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755599.1 1520343 D 582899 CDS YP_003755600.1 300022989 9387359 1521077..1521538 1 NC_014313.1 KEGG: mag:amb2297 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SMART: dihydroneopterin aldolase; dihydroneopterin aldolase 1521538 9387359 Hden_1467 Hyphomicrobium denitrificans ATCC 51888 dihydroneopterin aldolase YP_003755600.1 1521077 D 582899 CDS YP_003755601.1 300022990 9387360 1521531..1522145 1 NC_014313.1 PFAM: aspartate/glutamate/uridylate kinase; KEGG: msl:Msil_2395 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase 1522145 9387360 Hden_1468 Hyphomicrobium denitrificans ATCC 51888 aspartate/glutamate/uridylate kinase YP_003755601.1 1521531 D 582899 CDS YP_003755602.1 300022991 9387361 1522145..1522732 1 NC_014313.1 PFAM: protein of unknown function DUF447; KEGG: gbe:GbCGDNIH1_0766 hypothetical protein; hypothetical protein 1522732 9387361 Hden_1469 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755602.1 1522145 D 582899 CDS YP_003755603.1 300022992 9387362 1522729..1523910 1 NC_014313.1 KEGG: chu:CHU_3286 SAM-dependent methyltransferase; SAM-dependent methyltransferase 1523910 9387362 Hden_1470 Hyphomicrobium denitrificans ATCC 51888 SAM-dependent methyltransferase YP_003755603.1 1522729 D 582899 CDS YP_003755604.1 300022993 9387363 1524037..1524318 1 NC_014313.1 KEGG: mch:Mchl_2198 hypothetical protein; hypothetical protein 1524318 9387363 Hden_1471 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755604.1 1524037 D 582899 CDS YP_003755605.1 300022994 9387364 complement(1524379..1525392) 1 NC_014313.1 TIGRFAM: H4MPT-linked C1 transfer pathway protein; KEGG: mrd:Mrad2831_0965 H4MPT-linked C1 transfer pathway protein; H4MPT-linked C1 transfer pathway protein 1525392 9387364 Hden_1472 Hyphomicrobium denitrificans ATCC 51888 H4MPT-linked C1 transfer pathway protein YP_003755605.1 1524379 R 582899 CDS YP_003755606.1 300022995 9387365 1525451..1526158 1 NC_014313.1 PFAM: histidine biosynthesis protein; KEGG: gbe:GbCGDNIH1_0769 phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein; histidine biosynthesis protein 1526158 9387365 Hden_1473 Hyphomicrobium denitrificans ATCC 51888 histidine biosynthesis protein YP_003755606.1 1525451 D 582899 CDS YP_003755607.1 300022996 9387366 complement(1526339..1526851) 1 NC_014313.1 KEGG: xau:Xaut_0032 formaldehyde-activating protein; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme 1526851 9387366 Hden_1474 Hyphomicrobium denitrificans ATCC 51888 formaldehyde-activating enzyme YP_003755607.1 1526339 R 582899 CDS YP_003755608.1 300022997 9387367 complement(1527082..1527942) 1 NC_014313.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: met:M446_5782 triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA protein 1527942 9387367 Hden_1475 Hyphomicrobium denitrificans ATCC 51888 triphosphoribosyl-dephospho-CoA protein YP_003755608.1 1527082 R 582899 CDS YP_003755609.1 300022998 9387368 complement(1527939..1528922) 1 NC_014313.1 KEGG: mno:Mnod_6005 alpha-L-glutamate ligase, RimK family; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; RimK family alpha-L-glutamate ligase 1528922 9387368 Hden_1476 Hyphomicrobium denitrificans ATCC 51888 RimK family alpha-L-glutamate ligase YP_003755609.1 1527939 R 582899 CDS YP_003755610.1 300022999 9387369 complement(1528906..1529871) 1 NC_014313.1 TIGRFAM: methenyltetrahydromethanopterin cyclohydrolase; KEGG: mea:Mex_1p1763 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; PFAM: Methenyltetrahydromethanopterin cyclohydrolase; methenyltetrahydromethanopterin cyclohydrolase 1529871 9387369 Hden_1477 Hyphomicrobium denitrificans ATCC 51888 methenyltetrahydromethanopterin cyclohydrolase YP_003755610.1 1528906 R 582899 CDS YP_003755611.1 300023000 9387370 complement(1529900..1531024) 1 NC_014313.1 PFAM: protein of unknown function DUF201; KEGG: msl:Msil_2386 protein of unknown function DUF201; hypothetical protein 1531024 9387370 Hden_1478 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755611.1 1529900 R 582899 CDS YP_003755612.1 300023001 9387371 complement(1531029..1531931) 1 NC_014313.1 PFAM: methylene-tetrahydromethanopterin dehydrogenase; KEGG: msl:Msil_2385 methylenetetrahydrofolate dehydrogenase (NADP(+)); methylene-tetrahydromethanopterin dehydrogenase 1531931 9387371 Hden_1479 Hyphomicrobium denitrificans ATCC 51888 methylene-tetrahydromethanopterin dehydrogenase YP_003755612.1 1531029 R 582899 CDS YP_003755613.1 300023002 9387372 complement(1531960..1532928) 1 NC_014313.1 KEGG: msl:Msil_2384 beta-ribofuranosylaminobenzene 5'-phosphate synthase family; TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; beta-ribofuranosylaminobenzene 5'-phosphate synthase family 1532928 9387372 Hden_1480 Hyphomicrobium denitrificans ATCC 51888 beta-ribofuranosylaminobenzene 5'-phosphate synthase family YP_003755613.1 1531960 R 582899 CDS YP_003755614.1 300023003 9387373 1533045..1533422 1 NC_014313.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mrd:Mrad2831_2778 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 1533422 9387373 Hden_1481 Hyphomicrobium denitrificans ATCC 51888 transcriptional coactivator/pterin dehydratase YP_003755614.1 1533045 D 582899 CDS YP_003755615.1 300023004 9387374 1533435..1533962 1 NC_014313.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: mno:Mnod_5981 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1533962 9387374 Hden_1482 Hyphomicrobium denitrificans ATCC 51888 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_003755615.1 1533435 D 582899 CDS YP_003755616.1 300023005 9387375 complement(1534075..1534431) 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: mno:Mnod_4583 cytochrome c class I; cytochrome C class I 1534431 9387375 Hden_1483 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003755616.1 1534075 R 582899 CDS YP_003755617.1 300023006 9387376 complement(1534584..1535744) 1 NC_014313.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM protein; KEGG: bbt:BBta_6304 pyrroloquinoline quinone biosynthesis protein PqqE; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E 1535744 9387376 Hden_1484 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein E YP_003755617.1 1534584 R 582899 CDS YP_003755618.1 300023007 9387377 complement(1535774..1536076) 1 NC_014313.1 PFAM: coenzyme PQQ synthesis D; KEGG: rpc:RPC_0882 coenzyme PQQ synthesis D; coenzyme PQQ synthesis D 1536076 9387377 Hden_1485 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ synthesis D YP_003755618.1 1535774 R 582899 CDS YP_003755619.1 300023008 9387378 complement(1536089..1536865) 1 NC_014313.1 TIGRFAM: coenzyme PQQ biosynthesis protein C; KEGG: msl:Msil_1739 pyrroloquinoline quinone biosynthesis protein PqqC; PFAM: TENA/THI-4 domain protein; coenzyme PQQ biosynthesis protein C 1536865 9387378 Hden_1486 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein C YP_003755619.1 1536089 R 582899 CDS YP_003755620.1 300023009 9387379 complement(1536862..1537794) 1 NC_014313.1 TIGRFAM: coenzyme PQQ biosynthesis protein B; KEGG: azl:AZL_a09970 pyrroloquinoline quinone biosynthesis protein B; coenzyme PQQ biosynthesis protein B 1537794 9387379 Hden_1487 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein B YP_003755620.1 1536862 R 582899 CDS YP_003755621.1 300023010 9387380 complement(1537937..1538059) 1 NC_014313.1 KEGG: mex:Mext_1820 coenzyme PQQ biosynthesis protein A; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A 1538059 9387380 Hden_1488 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein A YP_003755621.1 1537937 R 582899 CDS YP_003755622.1 300023011 9387381 complement(1538199..1538516) 1 NC_014313.1 KEGG: bpl:BURPS1106A_A0321 hypothetical protein; hypothetical protein 1538516 9387381 Hden_1489 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755622.1 1538199 R 582899 CDS YP_003755623.1 300023012 9387382 1538660..1540447 1 NC_014313.1 PFAM: flavodoxin/nitric oxide synthase; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: met:M446_5483 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 1540447 9387382 Hden_1490 Hyphomicrobium denitrificans ATCC 51888 flavodoxin/nitric oxide synthase YP_003755623.1 1538660 D 582899 CDS YP_003755624.1 300023013 9387383 1540508..1542220 1 NC_014313.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: mno:Mnod_1804 sulfite reductase (NADPH) hemoprotein, beta-component; nitrite and sulfite reductase 4Fe-4S region 1542220 9387383 Hden_1491 Hyphomicrobium denitrificans ATCC 51888 nitrite and sulfite reductase 4Fe-4S region YP_003755624.1 1540508 D 582899 CDS YP_003755625.1 300023014 9387384 complement(1542259..1542894) 1 NC_014313.1 PFAM: ParB-like nuclease; KEGG: bid:Bind_2187 ParB-like nuclease; ParB-like nuclease 1542894 9387384 Hden_1492 Hyphomicrobium denitrificans ATCC 51888 ParB-like nuclease YP_003755625.1 1542259 R 582899 CDS YP_003755626.1 300023015 9387385 complement(1542918..1544237) 1 NC_014313.1 KEGG: rpe:RPE_3556 recombination factor protein RarA; PFAM: ATPase AAA; SMART: ATPase AAA; ATPase AAA 1544237 9387385 Hden_1493 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003755626.1 1542918 R 582899 CDS YP_003755627.1 300023016 9387386 complement(1544336..1544986) 1 NC_014313.1 PFAM: protein of unknown function DUF583; KEGG: ecb:100061543 chondroitin sulfate proteoglycan 4; hypothetical protein 1544986 9387386 Hden_1494 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755627.1 1544336 R 582899 CDS YP_003755628.1 300023017 9387387 1545193..1546176 1 NC_014313.1 manually curated; TIGRFAM: pseudouridine synthase, RluA family; KEGG: oan:Oant_2083 RluA family pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; pseudouridine synthase 1546176 9387387 Hden_1495 Hyphomicrobium denitrificans ATCC 51888 pseudouridine synthase YP_003755628.1 1545193 D 582899 CDS YP_003755629.1 300023018 9387388 1546217..1546747 1 NC_014313.1 KEGG: mes:Meso_0938 hypothetical protein; hypothetical protein 1546747 9387388 Hden_1496 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755629.1 1546217 D 582899 CDS YP_003755630.1 300023019 9387389 1546855..1547535 1 NC_014313.1 KEGG: gph1; phosphoglycolate phosphatase-1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1547535 9387389 Hden_1497 Hyphomicrobium denitrificans ATCC 51888 HAD-superfamily hydrolase YP_003755630.1 1546855 D 582899 CDS YP_003755631.1 300023020 9387390 1547532..1548347 1 NC_014313.1 PFAM: ATP12 ATPase; KEGG: rpa:RPA3207 ATP12 ATPase; ATP12 ATPase 1548347 9387390 Hden_1498 Hyphomicrobium denitrificans ATCC 51888 ATP12 ATPase YP_003755631.1 1547532 D 582899 CDS YP_003755632.1 300023021 9387391 complement(1548344..1549642) 1 NC_014313.1 PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: met:M446_5725 hypothetical protein; hypothetical protein 1549642 9387391 Hden_1499 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755632.1 1548344 R 582899 CDS YP_003755633.1 300023022 9387392 1549861..1550553 1 NC_014313.1 KEGG: scb:SCAB_3601 hypothetical protein; hypothetical protein 1550553 9387392 Hden_1500 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755633.1 1549861 D 582899 CDS YP_003755634.1 300023023 9387393 1550695..1552227 1 NC_014313.1 PFAM: carboxyl transferase; KEGG: pla:Plav_2771 carboxyl transferase; carboxyl transferase 1552227 9387393 Hden_1501 Hyphomicrobium denitrificans ATCC 51888 carboxyl transferase YP_003755634.1 1550695 D 582899 CDS YP_003755635.1 300023024 9387394 complement(1552345..1552641) 1 NC_014313.1 KEGG: sti:Sthe_2959 hypothetical protein; hypothetical protein 1552641 9387394 Hden_1502 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755635.1 1552345 R 582899 CDS YP_003755636.1 300023025 9387395 complement(1552648..1553763) 1 NC_014313.1 PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: psl:Psta_4108 hypothetical protein; glycosyl hydrolase 1553763 9387395 Hden_1503 Hyphomicrobium denitrificans ATCC 51888 glycosyl hydrolase YP_003755636.1 1552648 R 582899 CDS YP_003755637.1 300023026 9387396 1554096..1555289 1 NC_014313.1 PFAM: monooxygenase FAD-binding; KEGG: rpe:RPE_3593 monooxygenase, FAD-binding protein; FAD-binding monooxygenase protein 1555289 9387396 Hden_1504 Hyphomicrobium denitrificans ATCC 51888 FAD-binding monooxygenase protein YP_003755637.1 1554096 D 582899 CDS YP_003755638.1 300023027 9387397 complement(1555308..1556186) 1 NC_014313.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_1857 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 1556186 9387397 Hden_1505 Hyphomicrobium denitrificans ATCC 51888 6-phosphogluconate dehydrogenase YP_003755638.1 1555308 R 582899 CDS YP_003755639.1 300023028 9387398 1556370..1557080 1 NC_014313.1 PFAM: MgtC/SapB transporter; KEGG: nha:Nham_0456 MgtC/SapB transporter; MgtC/SapB transporter 1557080 9387398 Hden_1506 Hyphomicrobium denitrificans ATCC 51888 MgtC/SapB transporter YP_003755639.1 1556370 D 582899 CDS YP_003755640.1 300023029 9387399 1557137..1558450 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: avi:Avi_0513 MFS permease; major facilitator superfamily protein 1558450 9387399 Hden_1507 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003755640.1 1557137 D 582899 CDS YP_003755641.1 300023030 9387400 complement(1558467..1561043) 1 NC_014313.1 TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; haloacid dehalogenase; KEGG: rpt:Rpal_1856 ATPase P; SMART: TRASH domain protein; copper-translocating P-type ATPase 1561043 9387400 Hden_1508 Hyphomicrobium denitrificans ATCC 51888 copper-translocating P-type ATPase YP_003755641.1 1558467 R 582899 CDS YP_003755642.1 300023031 9387401 1561125..1561400 1 NC_014313.1 PFAM: protein of unknown function DUF156; KEGG: oca:OCAR_7636 hypothetical protein; hypothetical protein 1561400 9387401 Hden_1509 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755642.1 1561125 D 582899 CDS YP_003755643.1 300023032 9387402 1561558..1562550 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ara:Arad_10009 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1562550 9387402 Hden_1510 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003755643.1 1561558 D 582899 CDS YP_003755644.1 300023033 9387403 complement(1562557..1563396) 1 NC_014313.1 KEGG: rpe:RPE_1623 hypothetical protein; hypothetical protein 1563396 9387403 Hden_1511 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755644.1 1562557 R 582899 CDS YP_003755645.1 300023034 9387404 complement(1563583..1563852) 1 NC_014313.1 KEGG: nca:Noca_2595 peptidase C60, sortase A and B; hypothetical protein 1563852 9387404 Hden_1512 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755645.1 1563583 R 582899 CDS YP_003755646.1 300023035 9387405 complement(1563943..1564650) 1 NC_014313.1 PFAM: SCP-like extracellular; KEGG: eba:ebA3441 hypothetical protein; SCP-like extracellular 1564650 9387405 Hden_1513 Hyphomicrobium denitrificans ATCC 51888 SCP-like extracellular YP_003755646.1 1563943 R 582899 CDS YP_003755647.1 300023036 9387406 1564825..1567074 1 NC_014313.1 SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, subunit alpha; KEGG: atc:AGR_C_2144 topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase IV subunit alpha 1567074 9387406 Hden_1514 Hyphomicrobium denitrificans ATCC 51888 DNA topoisomerase IV subunit alpha YP_003755647.1 1564825 D 582899 CDS YP_003755648.1 300023037 9387407 1567183..1567602 1 NC_014313.1 KEGG: zma:100281488 LOC100281488; hypothetical protein 1567602 9387407 Hden_1515 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755648.1 1567183 D 582899 CDS YP_003755649.1 300023038 9387408 complement(1567630..1568394) 1 NC_014313.1 PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: bja:blr5039 arginyl-tRNA-protein transferase; arginine-tRNA-protein transferase 1568394 9387408 Hden_1516 Hyphomicrobium denitrificans ATCC 51888 arginine-tRNA-protein transferase YP_003755649.1 1567630 R 582899 CDS YP_003755650.1 300023039 9387409 complement(1568630..1568860) 1 NC_014313.1 KEGG: bfa:Bfae_09020 hypothetical protein; hypothetical protein 1568860 9387409 Hden_1517 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755650.1 1568630 R 582899 CDS YP_003755651.1 300023040 9387410 1569258..1569464 1 NC_014313.1 KEGG: bbt:BBta_5959 hypothetical protein; hypothetical protein 1569464 9387410 Hden_1518 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755651.1 1569258 D 582899 CDS YP_003755652.1 300023041 9387411 1569550..1570839 1 NC_014313.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: mno:Mnod_4793 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 1570839 9387411 Hden_1519 Hyphomicrobium denitrificans ATCC 51888 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_003755652.1 1569550 D 582899 CDS YP_003755653.1 300023042 9387412 1570861..1571181 1 NC_014313.1 KEGG: lif:LinJ31.1690 hypothetical protein; hypothetical protein 1571181 9387412 Hden_1520 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755653.1 1570861 D 582899 CDS YP_003755654.1 300023043 9387413 complement(1571251..1573065) 1 NC_014313.1 KEGG: mno:Mnod_6027 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; poly(R)-hydroxyalkanoic acid synthase, class I 1573065 9387413 Hden_1521 Hyphomicrobium denitrificans ATCC 51888 poly(R)-hydroxyalkanoic acid synthase, class I YP_003755654.1 1571251 R 582899 CDS YP_003755655.1 300023044 9387414 1573450..1574676 1 NC_014313.1 PFAM: aminotransferase class I and II; KEGG: xau:Xaut_3522 aminotransferase; class I and II aminotransferase 1574676 9387414 Hden_1522 Hyphomicrobium denitrificans ATCC 51888 class I and II aminotransferase YP_003755655.1 1573450 D 582899 CDS YP_003755656.1 300023045 9387415 1574686..1576011 1 NC_014313.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: oan:Oant_1917 homoserine dehydrogenase; homoserine dehydrogenase 1576011 9387415 Hden_1523 Hyphomicrobium denitrificans ATCC 51888 homoserine dehydrogenase YP_003755656.1 1574686 D 582899 CDS YP_003755657.1 300023046 9387416 1576054..1577052 1 NC_014313.1 TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: bmr:BMI_I1284 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein; fructose-1,6-bisphosphatase, class II 1577052 9387416 Hden_1524 Hyphomicrobium denitrificans ATCC 51888 fructose-1,6-bisphosphatase, class II YP_003755657.1 1576054 D 582899 CDS YP_003755658.1 300023047 9387417 1577164..1579014 1 NC_014313.1 KEGG: ara:Arad_2163 single-stranded-DNA-specific exonuclease protein; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease RecJ 1579014 9387417 Hden_1525 Hyphomicrobium denitrificans ATCC 51888 single-stranded-DNA-specific exonuclease RecJ YP_003755658.1 1577164 D 582899 CDS YP_003755659.1 300023048 9387419 complement(1579187..1580422) 1 NC_014313.1 PFAM: integrase family protein; KEGG: mch:Mchl_4758 integrase family protein; integrase family protein 1580422 9387419 Hden_1526 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003755659.1 1579187 R 582899 CDS YP_003755660.1 300023049 9387420 complement(1580419..1580688) 1 NC_014313.1 KEGG: dsh:Dshi_0989 hypothetical protein; hypothetical protein 1580688 9387420 Hden_1527 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755660.1 1580419 R 582899 CDS YP_003755661.1 300023050 9387421 complement(1580695..1580886) 1 NC_014313.1 KEGG: vex:VEA_001988 fatty oxidation complex alpha subunit FadB; hypothetical protein 1580886 9387421 Hden_1528 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755661.1 1580695 R 582899 CDS YP_003755662.1 300023051 9387422 complement(1580936..1581445) 1 NC_014313.1 KEGG: bgl:bglu_1g21240 P42.1; manually curated; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; Pathogenesis-related transcriptional factor and ERF protein 1581445 9387422 Hden_1529 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003755662.1 1580936 R 582899 CDS YP_003755663.1 300023052 9387423 complement(1581450..1581797) 1 NC_014313.1 KEGG: aco:Amico_0795 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; hypothetical protein 1581797 9387423 Hden_1530 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755663.1 1581450 R 582899 CDS YP_003755664.1 300023053 9387424 complement(1581810..1582064) 1 NC_014313.1 KEGG: cyb:CYB_1946 hypothetical protein; hypothetical protein 1582064 9387424 Hden_1531 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755664.1 1581810 R 582899 CDS YP_003755665.1 300023054 9387425 complement(1582068..1582319) 1 NC_014313.1 hypothetical protein 1582319 9387425 Hden_1532 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755665.1 1582068 R 582899 CDS YP_003755666.1 300023055 9387426 complement(1582316..1582552) 1 NC_014313.1 KEGG: bfo:BRAFLDRAFT_67299 hypothetical protein; hypothetical protein 1582552 9387426 Hden_1533 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755666.1 1582316 R 582899 CDS YP_003755667.1 300023056 9387427 complement(1582542..1583006) 1 NC_014313.1 KEGG: det:DET0983 translation initiation factor IF-2; hypothetical protein 1583006 9387427 Hden_1534 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755667.1 1582542 R 582899 CDS YP_003755668.1 300023057 9387428 complement(1583267..1583527) 1 NC_014313.1 KEGG: mdo:100019691 similar to FRAP-related protein; hypothetical protein 1583527 9387428 Hden_1535 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755668.1 1583267 R 582899 CDS YP_003755669.1 300023058 9387429 complement(1583524..1583670) 1 NC_014313.1 hypothetical protein 1583670 9387429 Hden_1536 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755669.1 1583524 R 582899 CDS YP_003755670.1 300023059 9387430 complement(1583670..1584020) 1 NC_014313.1 KEGG: dmo:Dmoj_GI23121 GI23121 gene product from transcript GI23121-RA; hypothetical protein 1584020 9387430 Hden_1537 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755670.1 1583670 R 582899 CDS YP_003755671.1 300023060 9387431 complement(1584021..1584338) 1 NC_014313.1 KEGG: olu:OSTLU_24147 predicted protein; hypothetical protein 1584338 9387431 Hden_1538 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755671.1 1584021 R 582899 CDS YP_003755672.1 300023061 9387432 complement(1584335..1584580) 1 NC_014313.1 hypothetical protein 1584580 9387432 Hden_1539 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755672.1 1584335 R 582899 CDS YP_003755673.1 300023062 9387433 complement(1584574..1585008) 1 NC_014313.1 KEGG: cre:CHLREDRAFT_167801 hypothetical protein; hypothetical protein 1585008 9387433 Hden_1540 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755673.1 1584574 R 582899 CDS YP_003755674.1 300023063 9387434 complement(1585405..1586160) 1 NC_014313.1 KEGG: mth:MTH1028 hypothetical protein; hypothetical protein 1586160 9387434 Hden_1541 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755674.1 1585405 R 582899 CDS YP_003755675.1 300023064 9387435 complement(1586157..1586531) 1 NC_014313.1 PFAM: HNH endonuclease; KEGG: sye:Syncc9902_1436 HNH nuclease; HNH endonuclease 1586531 9387435 Hden_1542 Hyphomicrobium denitrificans ATCC 51888 HNH endonuclease YP_003755675.1 1586157 R 582899 CDS YP_003755676.1 300023065 9387436 complement(1586528..1586686) 1 NC_014313.1 KEGG: tva:TVAG_348550 Sec23/Sec24 zinc finger family protein; hypothetical protein 1586686 9387436 Hden_1543 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755676.1 1586528 R 582899 CDS YP_003755677.1 300023066 9387437 complement(1586683..1587327) 1 NC_014313.1 KEGG: lhk:LHK_01497 exonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease 1587327 9387437 Hden_1544 Hyphomicrobium denitrificans ATCC 51888 phage-type endonuclease YP_003755677.1 1586683 R 582899 CDS YP_003755678.1 300023067 9387438 complement(1587324..1588040) 1 NC_014313.1 PFAM: ERF family protein; KEGG: rpi:Rpic_2344 ERF family protein; ERF family protein 1588040 9387438 Hden_1545 Hyphomicrobium denitrificans ATCC 51888 ERF family protein YP_003755678.1 1587324 R 582899 CDS YP_003755679.1 300023068 9387439 complement(1588037..1588207) 1 NC_014313.1 hypothetical protein 1588207 9387439 Hden_1546 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755679.1 1588037 R 582899 CDS YP_003755680.1 300023069 9387440 complement(1588194..1588604) 1 NC_014313.1 KEGG: sma:SAV_2858 M protein; hypothetical protein 1588604 9387440 Hden_1547 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755680.1 1588194 R 582899 CDS YP_003755681.1 300023070 9387441 complement(1588814..1588930) 1 NC_014313.1 hypothetical protein 1588930 9387441 Hden_1548 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755681.1 1588814 R 582899 CDS YP_003755682.1 300023071 9387442 complement(1588930..1589136) 1 NC_014313.1 hypothetical protein 1589136 9387442 Hden_1549 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755682.1 1588930 R 582899 CDS YP_003755683.1 300023072 9387443 complement(1589136..1589504) 1 NC_014313.1 KEGG: lga:LGAS_1167 trigger factor; hypothetical protein 1589504 9387443 Hden_1550 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755683.1 1589136 R 582899 CDS YP_003755684.1 300023073 9387444 1589870..1590493 1 NC_014313.1 KEGG: bpt:Bpet2666 chloride channel protein-related protein; hypothetical protein 1590493 9387444 Hden_1551 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755684.1 1589870 D 582899 CDS YP_003755685.1 300023074 9387445 complement(1590574..1590924) 1 NC_014313.1 KEGG: ere:EUBREC_0387 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 1590924 9387445 Hden_1552 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755685.1 1590574 R 582899 CDS YP_003755686.1 300023075 9387446 complement(1591149..1591427) 1 NC_014313.1 KEGG: mdo:100018023 similar to ATPase, class I, type 8B, member 3; hypothetical protein 1591427 9387446 Hden_1553 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755686.1 1591149 R 582899 CDS YP_003755687.1 300023076 9387447 1591780..1592127 1 NC_014313.1 KEGG: pmu:PM0674 hypothetical protein; hypothetical protein 1592127 9387447 Hden_1554 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755687.1 1591780 D 582899 CDS YP_003755688.1 300023077 9387448 1592196..1593158 1 NC_014313.1 KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein; hypothetical protein 1593158 9387448 Hden_1555 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755688.1 1592196 D 582899 CDS YP_003755689.1 300023078 9387449 1593228..1593593 1 NC_014313.1 KEGG: sro:Sros_7095 hypothetical protein; hypothetical protein 1593593 9387449 Hden_1556 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755689.1 1593228 D 582899 CDS YP_003755690.1 300023079 9387450 1593590..1593817 1 NC_014313.1 KEGG: mlo:mlr7272 hypothetical protein; hypothetical protein 1593817 9387450 Hden_1557 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755690.1 1593590 D 582899 CDS YP_003755691.1 300023080 9387451 1594155..1594361 1 NC_014313.1 KEGG: dfe:Dfer_3702 protein of unknown function DUF1549; hypothetical protein 1594361 9387451 Hden_1558 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755691.1 1594155 D 582899 CDS YP_003755692.1 300023081 9387452 1594462..1594602 1 NC_014313.1 hypothetical protein 1594602 9387452 Hden_1559 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755692.1 1594462 D 582899 CDS YP_003755693.1 300023082 9387453 1594599..1594949 1 NC_014313.1 KEGG: tmz:Tmz1t_0342 ATPase AAA; hypothetical protein 1594949 9387453 Hden_1560 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755693.1 1594599 D 582899 CDS YP_003755694.1 300023083 9387454 1594946..1595500 1 NC_014313.1 KEGG: dol:Dole_0697 NusG antitermination factor; hypothetical protein 1595500 9387454 Hden_1561 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755694.1 1594946 D 582899 CDS YP_003755695.1 300023084 9387455 1595497..1595649 1 NC_014313.1 hypothetical protein 1595649 9387455 Hden_1562 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755695.1 1595497 D 582899 CDS YP_003755696.1 300023085 9387456 1595639..1595944 1 NC_014313.1 KEGG: bph:Bphy_1887 lambda family phage portal protein; hypothetical protein 1595944 9387456 Hden_1563 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755696.1 1595639 D 582899 CDS YP_003755697.1 300023086 9387457 complement(1595972..1597009) 1 NC_014313.1 KEGG: pat:Patl_2643 KDPG and KHG aldolase; hypothetical protein 1597009 9387457 Hden_1564 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755697.1 1595972 R 582899 CDS YP_003755698.1 300023087 9387458 complement(1597006..1597125) 1 NC_014313.1 hypothetical protein 1597125 9387458 Hden_1565 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755698.1 1597006 R 582899 CDS YP_003755699.1 300023088 9387459 1597328..1597537 1 NC_014313.1 KEGG: rru:Rru_A0712 XRE family transcriptional regulator; hypothetical protein 1597537 9387459 Hden_1566 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755699.1 1597328 D 582899 CDS YP_003755700.1 300023089 9387461 1598564..1599364 1 NC_014313.1 KEGG: ade:Adeh_3620 hypothetical protein; hypothetical protein 1599364 9387461 Hden_1568 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755700.1 1598564 D 582899 CDS YP_003755701.1 300023090 9387462 1599400..1600725 1 NC_014313.1 KEGG: slt:Slit_1566 plectin; hypothetical protein 1600725 9387462 Hden_1569 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755701.1 1599400 D 582899 CDS YP_003755702.1 300023091 9387463 1600725..1602455 1 NC_014313.1 KEGG: mma:MM_2295 surface layer protein B; hypothetical protein 1602455 9387463 Hden_1570 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755702.1 1600725 D 582899 CDS YP_003755703.1 300023092 9387464 1602459..1602650 1 NC_014313.1 hypothetical protein 1602650 9387464 Hden_1571 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755703.1 1602459 D 582899 CDS YP_003755704.1 300023093 9387465 1602651..1602989 1 NC_014313.1 KEGG: ppa:PAS_chr2-2_0118 hypothetical protein; hypothetical protein 1602989 9387465 Hden_1572 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755704.1 1602651 D 582899 CDS YP_003755705.1 300023094 9387466 1602989..1603393 1 NC_014313.1 manually curated; KEGG: hap:HAPS_1583 phage small subunit terminase; phage small subunit terminase 1603393 9387466 Hden_1573 Hyphomicrobium denitrificans ATCC 51888 phage small subunit terminase YP_003755705.1 1602989 D 582899 CDS YP_003755706.1 300023095 9387469 1606905..1607075 1 NC_014313.1 KEGG: ppu:PP_3045 ClpP protease; hypothetical protein 1607075 9387469 Hden_1577 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755706.1 1606905 D 582899 CDS YP_003755707.1 300023096 9387470 1607211..1608083 1 NC_014313.1 KEGG: mrd:Mrad2831_5694 hypothetical protein; hypothetical protein 1608083 9387470 Hden_1578 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755707.1 1607211 D 582899 CDS YP_003755708.1 300023097 9387471 1608140..1609252 1 NC_014313.1 KEGG: rlt:Rleg2_1147 hypothetical protein; hypothetical protein 1609252 9387471 Hden_1579 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755708.1 1608140 D 582899 CDS YP_003755709.1 300023098 9387472 1609267..1609722 1 NC_014313.1 KEGG: yen:YE0694 adhesin; hypothetical protein 1609722 9387472 Hden_1580 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755709.1 1609267 D 582899 CDS YP_003755710.1 300023099 9387473 1609773..1609988 1 NC_014313.1 KEGG: osa:4336532 hypothetical protein; hypothetical protein 1609988 9387473 Hden_1581 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755710.1 1609773 D 582899 CDS YP_003755711.1 300023100 9387474 1609969..1610340 1 NC_014313.1 KEGG: mrb:Mrub_0518 type IV secretory pathway VirB4 protein; hypothetical protein 1610340 9387474 Hden_1582 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755711.1 1609969 D 582899 CDS YP_003755712.1 300023101 9387475 1610340..1611761 1 NC_014313.1 KEGG: rpi:Rpic_2295 hypothetical protein; hypothetical protein 1611761 9387475 Hden_1583 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755712.1 1610340 D 582899 CDS YP_003755713.1 300023102 9387476 1611758..1612210 1 NC_014313.1 KEGG: ypb:YPTS_3441 outer membrane autotransporter; outer membrane autotransporter 1612210 9387476 Hden_1584 Hyphomicrobium denitrificans ATCC 51888 outer membrane autotransporter YP_003755713.1 1611758 D 582899 CDS YP_003755714.1 300023103 9387477 1612207..1612899 1 NC_014313.1 KEGG: pan:PODANSg4525 hypothetical protein; hypothetical protein 1612899 9387477 Hden_1585 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755714.1 1612207 D 582899 CDS YP_003755715.1 300023104 9387478 1612931..1613536 1 NC_014313.1 KEGG: rcu:RCOM_1968810 DNA transfer protein gp7; hypothetical protein 1613536 9387478 Hden_1586 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755715.1 1612931 D 582899 CDS YP_003755716.1 300023105 9387479 1613536..1614024 1 NC_014313.1 PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bgl:bglu_1g21240 P42.1; Pathogenesis-related transcriptional factor and ERF protein 1614024 9387479 Hden_1587 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003755716.1 1613536 D 582899 CDS YP_003755717.1 300023106 9387480 1614024..1615205 1 NC_014313.1 KEGG: azc:AZC_0850 hypothetical protein; hypothetical protein 1615205 9387480 Hden_1588 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755717.1 1614024 D 582899 CDS YP_003755718.1 300023107 9387481 1615205..1617304 1 NC_014313.1 KEGG: mes:Meso_0239 hypothetical protein; hypothetical protein 1617304 9387481 Hden_1589 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755718.1 1615205 D 582899 CDS YP_003755719.1 300023108 9387483 1617527..1618816 1 NC_014313.1 KEGG: mea:Mex_1p1304 hypothetical protein; hypothetical protein 1618816 9387483 Hden_1591 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755719.1 1617527 D 582899 CDS YP_003755720.1 300023109 9387484 1618874..1619317 1 NC_014313.1 KEGG: ang:An10g00420 hypothetical protein; hypothetical protein 1619317 9387484 Hden_1592 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755720.1 1618874 D 582899 CDS YP_003755721.1 300023110 9387485 1619304..1619651 1 NC_014313.1 KEGG: syw:SYNW2350 hypothetical protein; hypothetical protein 1619651 9387485 Hden_1593 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755721.1 1619304 D 582899 CDS YP_003755722.1 300023111 9387486 1619648..1620445 1 NC_014313.1 KEGG: abc:ACICU_02150 hypothetical protein; hypothetical protein 1620445 9387486 Hden_1594 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755722.1 1619648 D 582899 CDS YP_003755723.1 300023112 9387487 1620445..1620693 1 NC_014313.1 KEGG: gym:GYMC10_3997 hypothetical protein; hypothetical protein 1620693 9387487 Hden_1595 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755723.1 1620445 D 582899 CDS YP_003755724.1 300023113 9387488 complement(1620848..1621333) 1 NC_014313.1 KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein 1621333 9387488 Hden_1596 Hyphomicrobium denitrificans ATCC 51888 Pathogenesis-related transcriptional factor and ERF protein YP_003755724.1 1620848 R 582899 CDS YP_003755725.1 300023114 9387489 1621369..1622145 1 NC_014313.1 KEGG: nfa:nfa8110 hypothetical protein; hypothetical protein 1622145 9387489 Hden_1597 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755725.1 1621369 D 582899 CDS YP_003755726.1 300023115 9387490 1622185..1622445 1 NC_014313.1 KEGG: bmj:BMULJ_02960 type IV pilus assembly protein; hypothetical protein 1622445 9387490 Hden_1598 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755726.1 1622185 D 582899 CDS YP_003755727.1 300023116 9387491 complement(1622757..1623152) 1 NC_014313.1 KEGG: bwe:BcerKBAB4_4213 ankyrin repeat-containing protein; ankyrin repeat-containing protein 1623152 9387491 Hden_1599 Hyphomicrobium denitrificans ATCC 51888 ankyrin repeat-containing protein YP_003755727.1 1622757 R 582899 CDS YP_003755728.1 300023117 9387492 complement(1623201..1623410) 1 NC_014313.1 hypothetical protein 1623410 9387492 Hden_1600 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755728.1 1623201 R 582899 CDS YP_003755729.1 300023118 9387493 1623507..1623803 1 NC_014313.1 KEGG: Ser/Thr phosphatase family protein; hypothetical protein 1623803 9387493 Hden_1601 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755729.1 1623507 D 582899 CDS YP_003755730.1 300023119 9387494 complement(1623893..1624480) 1 NC_014313.1 KEGG: tcu:Tcur_3375 protein of unknown function DUF308 membrane; hypothetical protein 1624480 9387494 Hden_1602 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755730.1 1623893 R 582899 CDS YP_003755731.1 300023120 9387495 complement(1624688..1625383) 1 NC_014313.1 KEGG: pkn:PKH_094500 MAEBL; hypothetical protein 1625383 9387495 Hden_1603 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755731.1 1624688 R 582899 CDS YP_003755732.1 300023121 9387496 complement(1625553..1625843) 1 NC_014313.1 KEGG: rce:RC1_1176 transglycosylase associated protein; transglycosylase associated protein 1625843 9387496 Hden_1604 Hyphomicrobium denitrificans ATCC 51888 transglycosylase associated protein YP_003755732.1 1625553 R 582899 CDS YP_003755733.1 300023122 9387497 complement(1626001..1627737) 1 NC_014313.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; KEGG: bxe:Bxe_B0816 transmembrane protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1627737 9387497 Hden_1605 Hyphomicrobium denitrificans ATCC 51888 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003755733.1 1626001 R 582899 CDS YP_003755734.1 300023123 9387498 1627966..1628748 1 NC_014313.1 PFAM: protein of unknown function DUF1194; KEGG: mch:Mchl_1533 protein of unknown function DUF1194; hypothetical protein 1628748 9387498 Hden_1606 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755734.1 1627966 D 582899 CDS YP_003755735.1 300023124 9387499 complement(1628751..1629008) 1 NC_014313.1 KEGG: xau:Xaut_0033 hypothetical protein; hypothetical protein 1629008 9387499 Hden_1607 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755735.1 1628751 R 582899 CDS YP_003755736.1 300023125 9387500 complement(1629123..1629932) 1 NC_014313.1 KEGG: mea:Mex_1p1755 formyltransferase/hydrolase complex Fhc subunit C; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase subunit alpha domain protein; formylmethanofuran dehydrogenase subunit C 1629932 9387500 Hden_1608 Hyphomicrobium denitrificans ATCC 51888 formylmethanofuran dehydrogenase subunit C YP_003755736.1 1629123 R 582899 CDS YP_003755737.1 300023126 9387501 complement(1629932..1630834) 1 NC_014313.1 TIGRFAM: formylmethanofuran/tetrahydromethanopterin N-formyltransferase; KEGG: mch:Mchl_2160 formylmethanofuran--tetrahydromethanopterin formyltransferase; PFAM: formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); formylmethanofuran/tetrahydromethanopterin N-formyltransferase 1630834 9387501 Hden_1609 Hyphomicrobium denitrificans ATCC 51888 formylmethanofuran/tetrahydromethanopterin N-formyltransferase YP_003755737.1 1629932 R 582899 CDS YP_003755738.1 300023127 9387502 complement(1630831..1632495) 1 NC_014313.1 KEGG: mca:MCA2859 formylmethanofurane dehydrogenase, A subunit, TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; formylmethanofuran dehydrogenase subunit A 1632495 9387502 Hden_1610 Hyphomicrobium denitrificans ATCC 51888 formylmethanofuran dehydrogenase subunit A YP_003755738.1 1630831 R 582899 CDS YP_003755739.1 300023128 9387503 complement(1632516..1633802) 1 NC_014313.1 KEGG: nhl:Nhal_0015 formylmethanofuran dehydrogenase subunit B; formylmethanofuran dehydrogenase subunit B 1633802 9387503 Hden_1611 Hyphomicrobium denitrificans ATCC 51888 formylmethanofuran dehydrogenase subunit B YP_003755739.1 1632516 R 582899 CDS YP_003755740.1 300023129 9387504 1634025..1634579 1 NC_014313.1 PFAM: polyketide cyclase/dehydrase; KEGG: mpo:Mpop_1790 conserved hypothetical protein; signal peptide; polyketide cyclase/dehydrase 1634579 9387504 Hden_1612 Hyphomicrobium denitrificans ATCC 51888 polyketide cyclase/dehydrase YP_003755740.1 1634025 D 582899 CDS YP_003755741.1 300023130 9387505 1634579..1635529 1 NC_014313.1 KEGG: bja:bll4706 hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; 40-residue YVTN family beta-propeller repeat protein 1635529 9387505 Hden_1613 Hyphomicrobium denitrificans ATCC 51888 40-residue YVTN family beta-propeller repeat protein YP_003755741.1 1634579 D 582899 CDS YP_003755742.1 300023131 9387506 1635707..1636390 1 NC_014313.1 KEGG: mpo:Mpop_1768 hypothetical protein; hypothetical protein 1636390 9387506 Hden_1614 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755742.1 1635707 D 582899 CDS YP_003755743.1 300023132 9387507 1636387..1636749 1 NC_014313.1 KEGG: rde:RD1_0883 hypothetical protein; hypothetical protein 1636749 9387507 Hden_1615 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755743.1 1636387 D 582899 CDS YP_003755744.1 300023133 9387508 complement(1636927..1637895) 1 NC_014313.1 SMART: beta-lactamase; KEGG: xau:Xaut_1782 beta-lactamase domain-containing protein; beta-lactamase 1637895 9387508 Hden_1616 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003755744.1 1636927 R 582899 CDS YP_003755745.1 300023134 9387509 1638341..1640167 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: xau:Xaut_1781 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 1640167 9387509 Hden_1617 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003755745.1 1638341 D 582899 CDS YP_003755746.1 300023135 9387510 1640458..1641042 1 NC_014313.1 KEGG: mrd:Mrad2831_0509 hypothetical protein; hypothetical protein 1641042 9387510 Hden_1618 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755746.1 1640458 D 582899 CDS YP_003755747.1 300023136 9387511 1641218..1642180 1 NC_014313.1 KEGG: rpe:RPE_0853 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1642180 9387511 Hden_1619 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003755747.1 1641218 D 582899 CDS YP_003755748.1 300023137 9387512 1642300..1642938 1 NC_014313.1 KEGG: bra:BRADO5467 hypothetical protein; hypothetical protein 1642938 9387512 Hden_1620 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755748.1 1642300 D 582899 CDS YP_003755749.1 300023138 9387513 1643195..1645033 1 NC_014313.1 PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: scl:sce5468 glutathione-regulated potassium-efflux system protein KefC; sodium/hydrogen exchanger 1645033 9387513 Hden_1621 Hyphomicrobium denitrificans ATCC 51888 sodium/hydrogen exchanger YP_003755749.1 1643195 D 582899 CDS YP_003755750.1 300023139 9387514 1645187..1647196 1 NC_014313.1 TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: rpc:RPC_2897 transketolase; SMART: transketolase; transketolase 1647196 9387514 Hden_1622 Hyphomicrobium denitrificans ATCC 51888 transketolase YP_003755750.1 1645187 D 582899 CDS YP_003755751.1 300023140 9387515 1647244..1648440 1 NC_014313.1 KEGG: mea:Mex_1p2369 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 1648440 9387515 Hden_1623 Hyphomicrobium denitrificans ATCC 51888 phosphoglycerate kinase YP_003755751.1 1647244 D 582899 CDS YP_003755752.1 300023141 9387516 1648481..1649278 1 NC_014313.1 PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: rpb:RPB_4376 cytochrome C biogenesis protein, transmembrane region; cytochrome C biogenesis protein transmembrane region 1649278 9387516 Hden_1624 Hyphomicrobium denitrificans ATCC 51888 cytochrome C biogenesis protein transmembrane region YP_003755752.1 1648481 D 582899 CDS YP_003755753.1 300023142 9387517 1649299..1650126 1 NC_014313.1 KEGG: mno:Mnod_4968 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1650126 9387517 Hden_1625 Hyphomicrobium denitrificans ATCC 51888 phosphomethylpyrimidine kinase YP_003755753.1 1649299 D 582899 CDS YP_003755754.1 300023143 9387518 1650520..1651752 1 NC_014313.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: met:M446_5803 membrane protein involved in aromatic hydrocarbon degradation; membrane protein involved in aromatic hydrocarbon degradation 1651752 9387518 Hden_1626 Hyphomicrobium denitrificans ATCC 51888 membrane protein involved in aromatic hydrocarbon degradation YP_003755754.1 1650520 D 582899 CDS YP_003755755.1 300023144 9387519 complement(1651831..1652379) 1 NC_014313.1 KEGG: mno:Mnod_4959 hypothetical protein; hypothetical protein 1652379 9387519 Hden_1627 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755755.1 1651831 R 582899 CDS YP_003755756.1 300023145 9387520 1652550..1653758 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: pla:Plav_2503 major facilitator transporter; major facilitator superfamily protein 1653758 9387520 Hden_1628 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003755756.1 1652550 D 582899 CDS YP_003755757.1 300023146 9387521 complement(1653762..1654739) 1 NC_014313.1 PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mno:Mnod_4475 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein 1654739 9387521 Hden_1629 Hyphomicrobium denitrificans ATCC 51888 mandelate racemase/muconate lactonizing protein YP_003755757.1 1653762 R 582899 CDS YP_003755758.1 300023147 9387522 complement(1654801..1657557) 1 NC_014313.1 PFAM: Apolipoprotein A1/A4/E; KEGG: rhi:NGR_c16680 kinesin-like protein; Apolipoprotein A1/A4/E 1657557 9387522 Hden_1630 Hyphomicrobium denitrificans ATCC 51888 Apolipoprotein A1/A4/E YP_003755758.1 1654801 R 582899 CDS YP_003755759.1 300023148 9387523 1657937..1658341 1 NC_014313.1 KEGG: pla:Plav_2517 Hpt protein; PFAM: Hpt domain protein; SMART: Hpt domain protein; Hpt protein 1658341 9387523 Hden_1631 Hyphomicrobium denitrificans ATCC 51888 Hpt protein YP_003755759.1 1657937 D 582899 CDS YP_003755760.1 300023149 9387524 1658520..1658840 1 NC_014313.1 PFAM: ferredoxin; KEGG: bja:bll5885 ferrodoxin; ferredoxin 1658840 9387524 Hden_1632 Hyphomicrobium denitrificans ATCC 51888 ferredoxin YP_003755760.1 1658520 D 582899 CDS YP_003755761.1 300023150 9387525 1658866..1659927 1 NC_014313.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bra:BRADO5079 thioredoxin reductase, FAD/NAD(P)-binding; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1659927 9387525 Hden_1633 Hyphomicrobium denitrificans ATCC 51888 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003755761.1 1658866 D 582899 CDS YP_003755762.1 300023151 9387526 complement(1659952..1661202) 1 NC_014313.1 KEGG: pla:Plav_2433 protein involved in cellulose biosynthesis (CelD)-like protein; protein involved in cellulose biosynthesis (CelD)-like protein 1661202 9387526 Hden_1634 Hyphomicrobium denitrificans ATCC 51888 protein involved in cellulose biosynthesis (CelD)-like protein YP_003755762.1 1659952 R 582899 CDS YP_003755763.1 300023152 9387527 complement(1661317..1661682) 1 NC_014313.1 KEGG: gwc:GWCH70_1179 inner-membrane translocator; inner-membrane translocator 1661682 9387527 Hden_1635 Hyphomicrobium denitrificans ATCC 51888 inner-membrane translocator YP_003755763.1 1661317 R 582899 CDS YP_003755764.1 300023153 9387528 complement(1661745..1662260) 1 NC_014313.1 KEGG: bfu:BC1G_12951 hypothetical protein; hypothetical protein 1662260 9387528 Hden_1636 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755764.1 1661745 R 582899 CDS YP_003755765.1 300023154 9387529 complement(1662399..1663610) 1 NC_014313.1 KEGG: rpd:RPD_3459 hypothetical protein; hypothetical protein 1663610 9387529 Hden_1637 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755765.1 1662399 R 582899 CDS YP_003755766.1 300023155 9387530 complement(1663778..1665112) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 1665112 9387530 Hden_1638 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755766.1 1663778 R 582899 CDS YP_003755767.1 300023156 9387531 complement(1665517..1666827) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 1666827 9387531 Hden_1639 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755767.1 1665517 R 582899 CDS YP_003755768.1 300023157 9387532 1667612..1669123 1 NC_014313.1 PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: rpe:RPE_0902 glucan biosynthesis protein G; periplasmic glucan biosynthesis protein MdoG 1669123 9387532 Hden_1640 Hyphomicrobium denitrificans ATCC 51888 periplasmic glucan biosynthesis protein MdoG YP_003755768.1 1667612 D 582899 CDS YP_003755769.1 300023158 9387533 1669108..1671081 1 NC_014313.1 KEGG: mpo:Mpop_3962 glucosyltransferase MdoH; glucosyltransferase MdoH 1671081 9387533 Hden_1641 Hyphomicrobium denitrificans ATCC 51888 glucosyltransferase MdoH YP_003755769.1 1669108 D 582899 CDS YP_003755770.1 300023159 9387534 complement(1671091..1672131) 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: bja:blr7254 hypothetical protein; hypothetical protein 1672131 9387534 Hden_1642 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755770.1 1671091 R 582899 CDS YP_003755771.1 300023160 9387535 complement(1672128..1673576) 1 NC_014313.1 PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rlg:Rleg_2178 protein of unknown function DUF463 YcjX family protein; hypothetical protein 1673576 9387535 Hden_1643 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755771.1 1672128 R 582899 CDS YP_003755772.1 300023161 9387536 complement(1673907..1674404) 1 NC_014313.1 KEGG: spu:593722 hypothetical LOC593722; hypothetical protein 1674404 9387536 Hden_1644 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755772.1 1673907 R 582899 CDS YP_003755773.1 300023162 9387537 1674486..1675925 1 NC_014313.1 KEGG: xau:Xaut_0519 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; Malonyl-CoA decarboxylase 1675925 9387537 Hden_1645 Hyphomicrobium denitrificans ATCC 51888 Malonyl-CoA decarboxylase YP_003755773.1 1674486 D 582899 CDS YP_003755774.1 300023163 9387538 1676072..1677034 1 NC_014313.1 PFAM: protein of unknown function zinc metallopeptidase KEGG: xau:Xaut_1265 protein of unknown function zinc metallopeptidase; hypothetical protein 1677034 9387538 Hden_1646 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755774.1 1676072 D 582899 CDS YP_003755775.1 300023164 9387539 complement(1677134..1678012) 1 NC_014313.1 PFAM: sporulation domain protein; KEGG: nha:Nham_1783 hypothetical protein; sporulation domain-containing protein 1678012 9387539 Hden_1647 Hyphomicrobium denitrificans ATCC 51888 sporulation domain-containing protein YP_003755775.1 1677134 R 582899 CDS YP_003755776.1 300023165 9387540 1678389..1679741 1 NC_014313.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: azc:AZC_1718 glucosamine-1-phosphate N-acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 1679741 9387540 Hden_1648 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylglucosamine pyrophosphorylase YP_003755776.1 1678389 D 582899 CDS YP_003755777.1 300023166 9387541 1679886..1681706 1 NC_014313.1 KEGG: bmr:BMI_II576 D-fructose-6-phosphate amidotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); glucosamine/fructose-6-phosphate aminotransferase 1681706 9387541 Hden_1649 Hyphomicrobium denitrificans ATCC 51888 glucosamine/fructose-6-phosphate aminotransferase YP_003755777.1 1679886 D 582899 CDS YP_003755778.1 300023167 9387542 1681780..1683102 1 NC_014313.1 PFAM: sporulation domain protein; KEGG: spw:SPCG_1750 cell wall surface anchor family protein; sporulation domain-containing protein 1683102 9387542 Hden_1650 Hyphomicrobium denitrificans ATCC 51888 sporulation domain-containing protein YP_003755778.1 1681780 D 582899 CDS YP_003755779.1 300023168 9387543 1683147..1683968 1 NC_014313.1 PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein; hypothetical protein 1683968 9387543 Hden_1651 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755779.1 1683147 D 582899 CDS YP_003755780.1 300023169 9387544 complement(1683965..1686079) 1 NC_014313.1 KEGG: mlo:mlr0830 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; nucleic acid binding OB-fold tRNA/helicase-type; helicase; SMART: DEAD-like helicase ; helicase; DEAD/DEAH box helicase 1686079 9387544 Hden_1652 Hyphomicrobium denitrificans ATCC 51888 DEAD/DEAH box helicase YP_003755780.1 1683965 R 582899 CDS YP_003755781.1 300023170 9387545 1686312..1686584 1 NC_014313.1 PFAM: protein of unknown function DUF339; KEGG: mch:Mchl_4531 protein of unknown function DUF339; hypothetical protein 1686584 9387545 Hden_1653 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755781.1 1686312 D 582899 CDS YP_003755782.1 300023171 9387546 1686594..1690079 1 NC_014313.1 TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase; helicase domain protein; TRCF domain protein; KEGG: azc:AZC_1221 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase; transcription-repair coupling factor 1690079 9387546 Hden_1654 Hyphomicrobium denitrificans ATCC 51888 transcription-repair coupling factor YP_003755782.1 1686594 D 582899 CDS YP_003755783.1 300023172 9387547 complement(1690076..1691614) 1 NC_014313.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_3087 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1691614 9387547 Hden_1655 Hyphomicrobium denitrificans ATCC 51888 AMP-dependent synthetase and ligase YP_003755783.1 1690076 R 582899 CDS YP_003755784.1 300023173 9387548 complement(1691614..1693410) 1 NC_014313.1 PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_3093 extracellular solute-binding protein; family 5 extracellular solute-binding protein 1693410 9387548 Hden_1656 Hyphomicrobium denitrificans ATCC 51888 family 5 extracellular solute-binding protein YP_003755784.1 1691614 R 582899 CDS YP_003755785.1 300023174 9387549 1693739..1694632 1 NC_014313.1 PFAM: invasion associated locus B family protein; KEGG: bja:bll4589 hypothetical protein; invasion associated locus B family protein 1694632 9387549 Hden_1657 Hyphomicrobium denitrificans ATCC 51888 invasion associated locus B family protein YP_003755785.1 1693739 D 582899 CDS YP_003755786.1 300023175 9387550 complement(1694756..1695088) 1 NC_014313.1 KEGG: mrd:Mrad2831_1655 hemimethylated DNA binding protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; hemimethylated DNA binding protein 1695088 9387550 Hden_1658 Hyphomicrobium denitrificans ATCC 51888 hemimethylated DNA binding protein YP_003755786.1 1694756 R 582899 CDS YP_003755787.1 300023176 9387551 complement(1695144..1696202) 1 NC_014313.1 PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_3870 HpcH/HpaI aldolase; HpcH/HpaI aldolase 1696202 9387551 Hden_1659 Hyphomicrobium denitrificans ATCC 51888 HpcH/HpaI aldolase YP_003755787.1 1695144 R 582899 CDS YP_003755788.1 300023177 9387552 1696423..1698048 1 NC_014313.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pzu:PHZ_p0173 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1698048 9387552 Hden_1660 Hyphomicrobium denitrificans ATCC 51888 acyl-CoA dehydrogenase domain-containing protein YP_003755788.1 1696423 D 582899 CDS YP_003755789.1 300023178 9387553 1698168..1699145 1 NC_014313.1 KEGG: sep:SE2249 streptococcal hemagglutinin protein; hypothetical protein 1699145 9387553 Hden_1661 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755789.1 1698168 D 582899 CDS YP_003755790.1 300023179 9387554 complement(1699150..1699497) 1 NC_014313.1 PFAM: protein of unknown function DUF486; KEGG: mes:Meso_1652 hypothetical protein; hypothetical protein 1699497 9387554 Hden_1662 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755790.1 1699150 R 582899 CDS YP_003755791.1 300023180 9387555 1699699..1699941 1 NC_014313.1 KEGG: kra:Krad_1453 protein of unknown function DUF477; hypothetical protein 1699941 9387555 Hden_1663 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755791.1 1699699 D 582899 CDS YP_003755792.1 300023181 9387556 complement(1700108..1700398) 1 NC_014313.1 KEGG: sce:YER093C Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain; hypothetical protein 1700398 9387556 Hden_1664 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755792.1 1700108 R 582899 CDS YP_003755793.1 300023182 9387557 1700586..1700891 1 NC_014313.1 KEGG: mrd:Mrad2831_1341 hypothetical protein; hypothetical protein 1700891 9387557 Hden_1665 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755793.1 1700586 D 582899 CDS YP_003755794.1 300023183 9387558 1701032..1701268 1 NC_014313.1 PFAM: protein of unknown function DUF883 ElaB; KEGG: protein of unknown function DUF883 ElaB; hypothetical protein 1701268 9387558 Hden_1666 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755794.1 1701032 D 582899 CDS YP_003755795.1 300023184 9387559 complement(1701290..1702114) 1 NC_014313.1 KEGG: tkm:TK90_0656 GTP-binding protein HSR1-related protein; GTP-binding protein HSR1-like protein 1702114 9387559 Hden_1667 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein HSR1-like protein YP_003755795.1 1701290 R 582899 CDS YP_003755796.1 300023185 9387560 complement(1702227..1703141) 1 NC_014313.1 KEGG: met:M446_4861 lipid A biosynthesis lauroyl acyltransferase; manually curated; PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 1703141 9387560 Hden_1668 Hyphomicrobium denitrificans ATCC 51888 lipid A biosynthesis acyltransferase YP_003755796.1 1702227 R 582899 CDS YP_003755797.1 300023186 9387561 complement(1703218..1704450) 1 NC_014313.1 KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 1704450 9387561 Hden_1669 Hyphomicrobium denitrificans ATCC 51888 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_003755797.1 1703218 R 582899 CDS YP_003755798.1 300023187 9387562 1704695..1706035 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 1706035 9387562 Hden_1670 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755798.1 1704695 D 582899 CDS YP_003755799.1 300023188 9387563 1706095..1706637 1 NC_014313.1 KEGG: bch:Bcen2424_6260 Sel1 domain-containing protein; hypothetical protein 1706637 9387563 Hden_1671 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755799.1 1706095 D 582899 CDS YP_003755800.1 300023189 9387564 1706899..1707228 1 NC_014313.1 KEGG: pla:Plav_3142 septum formation initiator; hypothetical protein 1707228 9387564 Hden_1672 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755800.1 1706899 D 582899 CDS YP_003755801.1 300023190 9387565 1707352..1707678 1 NC_014313.1 KEGG: mpo:Mpop_2911 hypothetical protein; hypothetical protein 1707678 9387565 Hden_1673 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755801.1 1707352 D 582899 CDS YP_003755802.1 300023191 9387566 1707918..1708334 1 NC_014313.1 KEGG: cai:Caci_4566 membrane protein of uknown function UCP014873; hypothetical protein 1708334 9387566 Hden_1674 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755802.1 1707918 D 582899 CDS YP_003755803.1 300023192 9387567 1708573..1708860 1 NC_014313.1 KEGG: sti:Sthe_0729 RNA polymerase, sigma 70 subunit, RpoD subfamily; hypothetical protein 1708860 9387567 Hden_1675 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755803.1 1708573 D 582899 CDS YP_003755804.1 300023193 9387568 1708953..1709207 1 NC_014313.1 KEGG: rlg:Rleg_1802 hypothetical protein; hypothetical protein 1709207 9387568 Hden_1676 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755804.1 1708953 D 582899 CDS YP_003755805.1 300023194 9387569 1709345..1709809 1 NC_014313.1 PFAM: cyclase/dehydrase; KEGG: mlo:mlr0393 hypothetical protein; cyclase/dehydrase 1709809 9387569 Hden_1677 Hyphomicrobium denitrificans ATCC 51888 cyclase/dehydrase YP_003755805.1 1709345 D 582899 CDS YP_003755806.1 300023195 9387570 complement(1710038..1710886) 1 NC_014313.1 PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein 1710886 9387570 Hden_1678 Hyphomicrobium denitrificans ATCC 51888 pentapeptide repeat protein YP_003755806.1 1710038 R 582899 CDS YP_003755807.1 300023196 9387571 complement(1710883..1711374) 1 NC_014313.1 PFAM: damage inducible protein CinA; KEGG: msl:Msil_0525 CinA domain protein; damage inducible protein CinA 1711374 9387571 Hden_1679 Hyphomicrobium denitrificans ATCC 51888 damage inducible protein CinA YP_003755807.1 1710883 R 582899 CDS YP_003755808.1 300023197 9387572 complement(1711503..1711988) 1 NC_014313.1 KEGG: bph:Bphy_5178 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 1711988 9387572 Hden_1680 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003755808.1 1711503 R 582899 CDS YP_003755809.1 300023198 9387573 complement(1712151..1712768) 1 NC_014313.1 PFAM: cation efflux protein; KEGG: mes:Meso_4140 transporter; cation efflux protein 1712768 9387573 Hden_1681 Hyphomicrobium denitrificans ATCC 51888 cation efflux protein YP_003755809.1 1712151 R 582899 CDS YP_003755810.1 300023199 9387574 complement(1712773..1713960) 1 NC_014313.1 KEGG: mlo:mll0395 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1713960 9387574 Hden_1682 Hyphomicrobium denitrificans ATCC 51888 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_003755810.1 1712773 R 582899 CDS YP_003755811.1 300023200 9387575 1714184..1715170 1 NC_014313.1 KEGG: pla:Plav_3131 nifR3 family TIM-barrel protein; TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase DuS; hypothetical protein 1715170 9387575 Hden_1683 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755811.1 1714184 D 582899 CDS YP_003755812.1 300023201 9387576 1715167..1716330 1 NC_014313.1 KEGG: xau:Xaut_4400 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; nitrogen specific signal transduction histidine kinase NtrB 1716330 9387576 Hden_1684 Hyphomicrobium denitrificans ATCC 51888 nitrogen specific signal transduction histidine kinase NtrB YP_003755812.1 1715167 D 582899 CDS YP_003755813.1 300023202 9387577 1716330..1717775 1 NC_014313.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: azc:AZC_3086 nitrogen assimilation regulatory protein NtrC; SMART: response regulator receiver; ATPase AAA; Fis family nitrogen metabolism transcriptional regulator NtrC 1717775 9387577 Hden_1685 Hyphomicrobium denitrificans ATCC 51888 Fis family nitrogen metabolism transcriptional regulator NtrC YP_003755813.1 1716330 D 582899 CDS YP_003755814.1 300023203 9387578 1718013..1720373 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: azc:AZC_3084 nitrogen regulation protein NtrY; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 1720373 9387578 Hden_1686 Hyphomicrobium denitrificans ATCC 51888 multi-sensor signal transduction histidine kinase YP_003755814.1 1718013 D 582899 CDS YP_003755815.1 300023204 9387579 1720405..1721805 1 NC_014313.1 KEGG: mno:Mnod_6543 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; Fis family two component sigma-54 specific transcriptional regulator 1721805 9387579 Hden_1687 Hyphomicrobium denitrificans ATCC 51888 Fis family two component sigma-54 specific transcriptional regulator YP_003755815.1 1720405 D 582899 CDS YP_003755816.1 300023205 9387580 1721821..1722684 1 NC_014313.1 PFAM: aminotransferase class IV; KEGG: xau:Xaut_4394 aminotransferase class IV; class IV aminotransferase 1722684 9387580 Hden_1688 Hyphomicrobium denitrificans ATCC 51888 class IV aminotransferase YP_003755816.1 1721821 D 582899 CDS YP_003755817.1 300023206 9387581 1722854..1723102 1 NC_014313.1 KEGG: xau:Xaut_4393 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; RNA chaperone Hfq 1723102 9387581 Hden_1689 Hyphomicrobium denitrificans ATCC 51888 RNA chaperone Hfq YP_003755817.1 1722854 D 582899 CDS YP_003755818.1 300023207 9387582 1723099..1724502 1 NC_014313.1 KEGG: rle:RL2285 GTP-binding protein; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; GTP-binding proten HflX 1724502 9387582 Hden_1690 Hyphomicrobium denitrificans ATCC 51888 GTP-binding proten HflX YP_003755818.1 1723099 D 582899 CDS YP_003755819.1 300023208 9387583 1724525..1725751 1 NC_014313.1 KEGG: pla:Plav_3170 hypothetical protein; manually curated; PFAM: monooxygenase FAD-binding; FAD-binding monooxygenase protein 1725751 9387583 Hden_1691 Hyphomicrobium denitrificans ATCC 51888 FAD-binding monooxygenase protein YP_003755819.1 1724525 D 582899 CDS YP_003755820.1 300023209 9387584 complement(1725748..1726755) 1 NC_014313.1 KEGG: bra:BRADO3851 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; MazG family protein 1726755 9387584 Hden_1692 Hyphomicrobium denitrificans ATCC 51888 MazG family protein YP_003755820.1 1725748 R 582899 CDS YP_003755821.1 300023210 9387585 complement(1726825..1727517) 1 NC_014313.1 KEGG: pna:Pnap_4852 hypothetical protein; hypothetical protein 1727517 9387585 Hden_1693 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755821.1 1726825 R 582899 CDS YP_003755822.1 300023211 9387586 1727591..1728004 1 NC_014313.1 KEGG: lch:Lcho_1797 hypothetical protein; hypothetical protein 1728004 9387586 Hden_1694 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755822.1 1727591 D 582899 CDS YP_003755823.1 300023212 9387587 1728001..1728516 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_3268 acetyltransferase; GCN5-like N-acetyltransferase 1728516 9387587 Hden_1695 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003755823.1 1728001 D 582899 CDS YP_003755824.1 300023213 9387588 1728584..1729309 1 NC_014313.1 KEGG: pap:PSPA7_0354 hypothetical protein; hypothetical protein 1729309 9387588 Hden_1696 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755824.1 1728584 D 582899 CDS YP_003755825.1 300023214 9387589 1729326..1729679 1 NC_014313.1 KEGG: ank:AnaeK_4223 hypothetical protein; hypothetical protein 1729679 9387589 Hden_1697 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755825.1 1729326 D 582899 CDS YP_003755826.1 300023215 9387590 1729748..1730389 1 NC_014313.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rlt:Rleg2_2224 bifunctional deaminase-reductase domain protein; bifunctional deaminase-reductase domain-containing protein 1730389 9387590 Hden_1698 Hyphomicrobium denitrificans ATCC 51888 bifunctional deaminase-reductase domain-containing protein YP_003755826.1 1729748 D 582899 CDS YP_003755827.1 300023216 9387591 complement(1730547..1732076) 1 NC_014313.1 KEGG: mes:Meso_1756 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; leucyl aminopeptidase 1732076 9387591 Hden_1699 Hyphomicrobium denitrificans ATCC 51888 leucyl aminopeptidase YP_003755827.1 1730547 R 582899 CDS YP_003755828.1 300023217 9387592 1732430..1733626 1 NC_014313.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mno:Mnod_5836 permease YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1733626 9387592 Hden_1700 Hyphomicrobium denitrificans ATCC 51888 permease YjgP/YjgQ family protein YP_003755828.1 1732430 D 582899 CDS YP_003755829.1 300023218 9387593 1733623..1734717 1 NC_014313.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mrd:Mrad2831_0555 permease YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1734717 9387593 Hden_1701 Hyphomicrobium denitrificans ATCC 51888 permease YjgP/YjgQ family protein YP_003755829.1 1733623 D 582899 CDS YP_003755830.1 300023219 9387594 1734721..1737198 1 NC_014313.1 PFAM: organic solvent tolerance protein; OstA family protein; KEGG: azc:AZC_4323 organic solvent tolerance protein-like precursor; organic solvent tolerance protein 1737198 9387594 Hden_1702 Hyphomicrobium denitrificans ATCC 51888 organic solvent tolerance protein YP_003755830.1 1734721 D 582899 CDS YP_003755831.1 300023220 9387595 1737325..1738653 1 NC_014313.1 PFAM: SurA domain; KEGG: rpt:Rpal_3474 SurA domain; SurA domain-containing protein 1738653 9387595 Hden_1703 Hyphomicrobium denitrificans ATCC 51888 SurA domain-containing protein YP_003755831.1 1737325 D 582899 CDS YP_003755832.1 300023221 9387596 1738656..1739717 1 NC_014313.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: rpt:Rpal_3475 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1739717 9387596 Hden_1704 Hyphomicrobium denitrificans ATCC 51888 4-hydroxythreonine-4-phosphate dehydrogenase YP_003755832.1 1738656 D 582899 CDS YP_003755833.1 300023222 9387597 1739714..1740586 1 NC_014313.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: mes:Meso_1762 dimethyladenosine transferase; SMART: ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 1740586 9387597 Hden_1705 Hyphomicrobium denitrificans ATCC 51888 dimethyladenosine transferase YP_003755833.1 1739714 D 582899 CDS YP_003755834.1 300023223 9387598 complement(1740583..1741233) 1 NC_014313.1 SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: bra:BRADO3317 guanylate kinase; PFAM: guanylate kinase; guanylate kinase 1741233 9387598 Hden_1706 Hyphomicrobium denitrificans ATCC 51888 guanylate kinase YP_003755834.1 1740583 R 582899 CDS YP_003755835.1 300023224 9387599 complement(1741261..1742151) 1 NC_014313.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: mag:amb0747 hypothetical protein; YicC domain-containing protein 1742151 9387599 Hden_1707 Hyphomicrobium denitrificans ATCC 51888 YicC domain-containing protein YP_003755835.1 1741261 R 582899 CDS YP_003755836.1 300023225 9387600 complement(1742248..1743654) 1 NC_014313.1 PFAM: aminodeoxychorismate lyase; KEGG: rpt:Rpal_3481 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1743654 9387600 Hden_1708 Hyphomicrobium denitrificans ATCC 51888 aminodeoxychorismate lyase YP_003755836.1 1742248 R 582899 CDS YP_003755837.1 300023226 9387601 complement(1743791..1745053) 1 NC_014313.1 KEGG: rpt:Rpal_3482 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 1745053 9387601 Hden_1709 Hyphomicrobium denitrificans ATCC 51888 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_003755837.1 1743791 R 582899 CDS YP_003755838.1 300023227 9387602 complement(1745194..1745436) 1 NC_014313.1 KEGG: nha:Nham_2352 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein 1745436 9387602 Hden_1710 Hyphomicrobium denitrificans ATCC 51888 acyl carrier protein YP_003755838.1 1745194 R 582899 CDS YP_003755839.1 300023228 9387603 complement(1745836..1746582) 1 NC_014313.1 KEGG: xau:Xaut_3115 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase 1746582 9387603 Hden_1711 Hyphomicrobium denitrificans ATCC 51888 3-oxoacyl-(acyl-carrier-protein) reductase YP_003755839.1 1745836 R 582899 CDS YP_003755840.1 300023229 9387604 complement(1746593..1747540) 1 NC_014313.1 KEGG: rpd:RPD_2983 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; malonyl CoA-acyl carrier protein transacylase 1747540 9387604 Hden_1712 Hyphomicrobium denitrificans ATCC 51888 malonyl CoA-acyl carrier protein transacylase YP_003755840.1 1746593 R 582899 CDS YP_003755841.1 300023230 9387605 complement(1747682..1748206) 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_3678 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1748206 9387605 Hden_1713 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003755841.1 1747682 R 582899 CDS YP_003755842.1 300023231 9387606 1748540..1749352 1 NC_014313.1 KEGG: hau:Haur_0515 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; band 7 protein 1749352 9387606 Hden_1714 Hyphomicrobium denitrificans ATCC 51888 band 7 protein YP_003755842.1 1748540 D 582899 CDS YP_003755843.1 300023232 9387607 complement(1749385..1749630) 1 NC_014313.1 KEGG: mgi:Mflv_3597 prolipoprotein diacylglyceryl transferase; hypothetical protein 1749630 9387607 Hden_1715 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755843.1 1749385 R 582899 CDS YP_003755844.1 300023233 9387608 1750025..1750564 1 NC_014313.1 KEGG: pla:Plav_3361 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 1750564 9387608 Hden_1716 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S6 YP_003755844.1 1750025 D 582899 CDS YP_003755845.1 300023234 9387609 1750568..1750822 1 NC_014313.1 KEGG: mag:amb2101 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 1750822 9387609 Hden_1717 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S18 YP_003755845.1 1750568 D 582899 CDS YP_003755846.1 300023235 9387610 1750931..1751881 1 NC_014313.1 KEGG: rpd:RPD_2987 hypothetical protein; hypothetical protein 1751881 9387610 Hden_1718 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755846.1 1750931 D 582899 CDS YP_003755847.1 300023236 9387611 1751929..1752513 1 NC_014313.1 KEGG: oan:Oant_0566 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9-like; 50S ribosomal protein L9 1752513 9387611 Hden_1719 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L9 YP_003755847.1 1751929 D 582899 CDS YP_003755848.1 300023237 9387612 1752677..1754188 1 NC_014313.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: msl:Msil_0416 replicative DNA helicase; SMART: ATPase AAA; replicative DNA helicase 1754188 9387612 Hden_1720 Hyphomicrobium denitrificans ATCC 51888 replicative DNA helicase YP_003755848.1 1752677 D 582899 CDS YP_003755849.1 300023238 9387613 1754210..1755352 1 NC_014313.1 TIGRFAM: alanine racemase; KEGG: rpe:RPE_3334 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1755352 9387613 Hden_1721 Hyphomicrobium denitrificans ATCC 51888 alanine racemase YP_003755849.1 1754210 D 582899 CDS YP_003755850.1 300023239 9387614 1755352..1756728 1 NC_014313.1 TIGRFAM: DNA repair protein RadA; PFAM: DnaB domain protein helicase; KEGG: nwi:Nwi_2015 DNA repair protein RadA; SMART: ATPase AAA; DNA repair protein RadA 1756728 9387614 Hden_1722 Hyphomicrobium denitrificans ATCC 51888 DNA repair protein RadA YP_003755850.1 1755352 D 582899 CDS YP_003755851.1 300023240 9387615 1756784..1757416 1 NC_014313.1 PFAM: colicin V production protein; KEGG: azc:AZC_0534 uncharacterized membrane protein; colicin V production protein 1757416 9387615 Hden_1723 Hyphomicrobium denitrificans ATCC 51888 colicin V production protein YP_003755851.1 1756784 D 582899 CDS YP_003755852.1 300023241 9387616 1757506..1758987 1 NC_014313.1 KEGG: bid:Bind_2311 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 1758987 9387616 Hden_1724 Hyphomicrobium denitrificans ATCC 51888 amidophosphoribosyltransferase YP_003755852.1 1757506 D 582899 CDS YP_003755853.1 300023242 9387617 1759027..1759812 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_4628 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1759812 9387617 Hden_1725 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003755853.1 1759027 D 582899 CDS YP_003755854.1 300023243 9387618 1760003..1760407 1 NC_014313.1 PFAM: protein of unknown function DUF930; KEGG: nha:Nham_0170 hypothetical protein; hypothetical protein 1760407 9387618 Hden_1726 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755854.1 1760003 D 582899 CDS YP_003755855.1 300023244 9387619 complement(1760447..1761244) 1 NC_014313.1 KEGG: bid:Bind_1532 metal-dependent hydrolase; metal-dependent hydrolase 1761244 9387619 Hden_1727 Hyphomicrobium denitrificans ATCC 51888 metal-dependent hydrolase YP_003755855.1 1760447 R 582899 CDS YP_003755856.1 300023245 9387620 complement(1761241..1762050) 1 NC_014313.1 KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; hydrolase, TatD family 1762050 9387620 Hden_1728 Hyphomicrobium denitrificans ATCC 51888 hydrolase, TatD family YP_003755856.1 1761241 R 582899 CDS YP_003755857.1 300023246 9387621 complement(1762050..1763612) 1 NC_014313.1 KEGG: rhi:NGR_c16040 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); methionyl-tRNA synthetase 1763612 9387621 Hden_1729 Hyphomicrobium denitrificans ATCC 51888 methionyl-tRNA synthetase YP_003755857.1 1762050 R 582899 CDS YP_003755858.1 300023247 9387622 complement(1763662..1764783) 1 NC_014313.1 SMART: ATPase AAA; KEGG: pla:Plav_3112 DNA replication ATPase; ATPase AAA 1764783 9387622 Hden_1730 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003755858.1 1763662 R 582899 CDS YP_003755859.1 300023248 9387623 complement(1764783..1765412) 1 NC_014313.1 TIGRFAM: thymidylate kinase; KEGG: pzu:PHZ_c1605 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase 1765412 9387623 Hden_1731 Hyphomicrobium denitrificans ATCC 51888 thymidylate kinase YP_003755859.1 1764783 R 582899 CDS YP_003755860.1 300023249 9387624 complement(1765442..1766635) 1 NC_014313.1 KEGG: mea:Mex_1p3122 penicillin binding protein, beta-lactamase/transpeptidase-like superfamily; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase 1766635 9387624 Hden_1732 Hyphomicrobium denitrificans ATCC 51888 serine-type D-Ala-D-Ala carboxypeptidase YP_003755860.1 1765442 R 582899 CDS YP_003755861.1 300023250 9387625 complement(1766744..1767877) 1 NC_014313.1 KEGG: bmr:BMI_I991 lipoprotein A family protein; TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; lipoprotein A 1767877 9387625 Hden_1733 Hyphomicrobium denitrificans ATCC 51888 lipoprotein A YP_003755861.1 1766744 R 582899 CDS YP_003755862.1 300023251 9387627 1768349..1769605 1 NC_014313.1 PFAM: integrase family protein; KEGG: nmu:Nmul_A0922 phage integrase; integrase family protein 1769605 9387627 Hden_1734 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003755862.1 1768349 D 582899 CDS YP_003755863.1 300023252 9387628 1769592..1770392 1 NC_014313.1 KEGG: lma:LmjF34.0690 hypothetical protein; hypothetical protein 1770392 9387628 Hden_1735 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755863.1 1769592 D 582899 CDS YP_003755864.1 300023253 9387629 1770469..1770774 1 NC_014313.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: bmr:BMI_II1049 phage excisionase; excisionase family DNA binding domain-containing protein 1770774 9387629 Hden_1736 Hyphomicrobium denitrificans ATCC 51888 excisionase family DNA binding domain-containing protein YP_003755864.1 1770469 D 582899 CDS YP_003755865.1 300023254 9387630 1770924..1771796 1 NC_014313.1 KEGG: oca:OCAR_6148 virulence-associated protein E; hypothetical protein 1771796 9387630 Hden_1737 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755865.1 1770924 D 582899 CDS YP_003755866.1 300023255 9387631 1771793..1772998 1 NC_014313.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: dia:Dtpsy_3221 phage/plasmid primase, P4 family; SMART: primase P4; phage/plasmid primase, P4 family 1772998 9387631 Hden_1738 Hyphomicrobium denitrificans ATCC 51888 phage/plasmid primase, P4 family YP_003755866.1 1771793 D 582899 CDS YP_003755867.1 300023256 9387635 complement(1773550..1776708) 1 NC_014313.1 KEGG: xau:Xaut_4833 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump 1776708 9387635 Hden_1742 Hyphomicrobium denitrificans ATCC 51888 CzcA family heavy metal efflux pump YP_003755867.1 1773550 R 582899 CDS YP_003755868.1 300023257 9387636 complement(1776705..1778177) 1 NC_014313.1 KEGG: nwi:Nwi_3130 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1778177 9387636 Hden_1743 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003755868.1 1776705 R 582899 CDS YP_003755869.1 300023258 9387637 complement(1778174..1778569) 1 NC_014313.1 KEGG: xau:Xaut_3974 hypothetical protein; hypothetical protein 1778569 9387637 Hden_1744 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755869.1 1778174 R 582899 CDS YP_003755870.1 300023259 9387638 1778747..1779127 1 NC_014313.1 KEGG: sye:Syncc9902_0017 hypothetical protein; hypothetical protein 1779127 9387638 Hden_1745 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755870.1 1778747 D 582899 CDS YP_003755871.1 300023260 9387639 complement(1779124..1779777) 1 NC_014313.1 PFAM: cation efflux protein; KEGG: oca:OCAR_6177 cation efflux permease; cation efflux protein 1779777 9387639 Hden_1746 Hyphomicrobium denitrificans ATCC 51888 cation efflux protein YP_003755871.1 1779124 R 582899 CDS YP_003755872.1 300023261 9387640 1779843..1780268 1 NC_014313.1 KEGG: rru:Rru_A1026 MerR family transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1780268 9387640 Hden_1747 Hyphomicrobium denitrificans ATCC 51888 MerR family transcriptional regulator YP_003755872.1 1779843 D 582899 CDS YP_003755873.1 300023262 9387642 complement(1781383..1782105) 1 NC_014313.1 KEGG: bmi:BMEA_A1674 outer membrane protein Omp31; hypothetical protein 1782105 9387642 Hden_1749 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755873.1 1781383 R 582899 CDS YP_003755874.1 300023263 9387643 complement(1782415..1783110) 1 NC_014313.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: oca:OCAR_4872 H3U; hypothetical protein 1783110 9387643 Hden_1750 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755874.1 1782415 R 582899 CDS YP_003755875.1 300023264 9387644 1783956..1786376 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0957 TonB-dependent receptor; TonB-dependent receptor 1786376 9387644 Hden_1751 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003755875.1 1783956 D 582899 CDS YP_003755876.1 300023265 9387645 1786463..1787506 1 NC_014313.1 PFAM: periplasmic binding protein; KEGG: nha:Nham_0956 periplasmic binding protein; periplasmic binding protein 1787506 9387645 Hden_1752 Hyphomicrobium denitrificans ATCC 51888 periplasmic binding protein YP_003755876.1 1786463 D 582899 CDS YP_003755877.1 300023266 9387646 1787556..1788599 1 NC_014313.1 PFAM: luciferase; KEGG: nha:Nham_0958 luciferase-like; luciferase 1788599 9387646 Hden_1753 Hyphomicrobium denitrificans ATCC 51888 luciferase YP_003755877.1 1787556 D 582899 CDS YP_003755878.1 300023267 9387647 1788596..1789615 1 NC_014313.1 PFAM: transporter permease; KEGG: nha:Nham_0954 transporter permease; transporter permease 1789615 9387647 Hden_1754 Hyphomicrobium denitrificans ATCC 51888 transporter permease YP_003755878.1 1788596 D 582899 CDS YP_003755879.1 300023268 9387648 1789642..1790451 1 NC_014313.1 KEGG: nha:Nham_0955 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 1790451 9387648 Hden_1755 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755879.1 1789642 D 582899 CDS YP_003755880.1 300023269 9387649 complement(1790574..1791446) 1 NC_014313.1 KEGG: eli:ELI_04750 hypothetical protein; hypothetical protein 1791446 9387649 Hden_1756 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755880.1 1790574 R 582899 CDS YP_003755881.1 300023270 9387650 complement(1791515..1792174) 1 NC_014313.1 KEGG: cai:Caci_8233 hypothetical protein; hypothetical protein 1792174 9387650 Hden_1757 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755881.1 1791515 R 582899 CDS YP_003755882.1 300023271 9387651 complement(1792167..1792508) 1 NC_014313.1 PFAM: transcriptional regulator PadR family protein; KEGG: sli:Slin_6512 PadR family transcriptional regulator; PadR family transcriptional regulator 1792508 9387651 Hden_1758 Hyphomicrobium denitrificans ATCC 51888 PadR family transcriptional regulator YP_003755882.1 1792167 R 582899 CDS YP_003755883.1 300023272 9387652 1792825..1793166 1 NC_014313.1 KEGG: nmu:Nmul_A1285 cupin region; manually curated; PFAM: cupin; cupin 1793166 9387652 Hden_1759 Hyphomicrobium denitrificans ATCC 51888 cupin YP_003755883.1 1792825 D 582899 CDS YP_003755884.1 300023273 9387653 complement(1793189..1793371) 1 NC_014313.1 KEGG: ddi:DDBDRAFT_0217139 hypothetical protein; hypothetical protein 1793371 9387653 Hden_1760 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755884.1 1793189 R 582899 CDS YP_003755885.1 300023274 9387654 complement(1793530..1793649) 1 NC_014313.1 hypothetical protein 1793649 9387654 Hden_1761 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755885.1 1793530 R 582899 CDS YP_003755886.1 300023275 9387655 complement(1793953..1794438) 1 NC_014313.1 KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein 1794438 9387655 Hden_1762 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755886.1 1793953 R 582899 CDS YP_003755887.1 300023276 9387656 complement(1794498..1794866) 1 NC_014313.1 KEGG: hut:Huta_2122 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; hypothetical protein 1794866 9387656 Hden_1763 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755887.1 1794498 R 582899 CDS YP_003755888.1 300023277 9387657 complement(1794874..1795749) 1 NC_014313.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: hba:Hbal_2118 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 1795749 9387657 Hden_1764 Hyphomicrobium denitrificans ATCC 51888 cobyrinic acid ac-diamide synthase YP_003755888.1 1794874 R 582899 CDS YP_003755889.1 300023278 9387658 complement(1795746..1796294) 1 NC_014313.1 KEGG: rpc:RPC_4740 hypothetical protein; hypothetical protein 1796294 9387658 Hden_1765 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755889.1 1795746 R 582899 CDS YP_003755890.1 300023279 9387659 complement(1796465..1798309) 1 NC_014313.1 KEGG: mno:Mnod_4585 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase 1798309 9387659 Hden_1766 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor hybrid histidine kinase YP_003755890.1 1796465 R 582899 CDS YP_003755891.1 300023280 9387660 complement(1798251..1798568) 1 NC_014313.1 KEGG: bpd:BURPS668_A1670 AMP-binding domain-containing protein; AMP-binding domain-containing protein 1798568 9387660 Hden_1767 Hyphomicrobium denitrificans ATCC 51888 AMP-binding domain-containing protein YP_003755891.1 1798251 R 582899 CDS YP_003755892.1 300023281 9387661 complement(1799382..1800668) 1 NC_014313.1 TIGRFAM: enolase; KEGG: rru:Rru_A1885 phosphopyruvate hydratase; PFAM: Enolase-like; enolase 1800668 9387661 Hden_1768 Hyphomicrobium denitrificans ATCC 51888 enolase YP_003755892.1 1799382 R 582899 CDS YP_003755893.1 300023282 9387662 1800814..1801173 1 NC_014313.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ank:AnaeK_3374 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 1801173 9387662 Hden_1769 Hyphomicrobium denitrificans ATCC 51888 glutathione-dependent formaldehyde-activating protein YP_003755893.1 1800814 D 582899 CDS YP_003755894.1 300023283 9387663 1801177..1801875 1 NC_014313.1 KEGG: hne:HNE_0531 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exsB protein 1801875 9387663 Hden_1770 Hyphomicrobium denitrificans ATCC 51888 exsB protein YP_003755894.1 1801177 D 582899 CDS YP_003755895.1 300023284 9387664 1801854..1802099 1 NC_014313.1 KEGG: mfa:Mfla_2600 hypothetical protein; hypothetical protein 1802099 9387664 Hden_1771 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755895.1 1801854 D 582899 CDS YP_003755896.1 300023285 9387665 complement(1802106..1802591) 1 NC_014313.1 PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_4125 hypothetical protein; thioesterase superfamily protein 1802591 9387665 Hden_1772 Hyphomicrobium denitrificans ATCC 51888 thioesterase superfamily protein YP_003755896.1 1802106 R 582899 CDS YP_003755897.1 300023286 9387666 1802923..1803951 1 NC_014313.1 KEGG: dhd:Dhaf_1545 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 1803951 9387666 Hden_1773 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003755897.1 1802923 D 582899 CDS YP_003755898.1 300023287 9387667 1804114..1804740 1 NC_014313.1 PFAM: radical SAM protein; KEGG: bph:Bphy_0044 radical SAM domain-containing protein; radical SAM protein 1804740 9387667 Hden_1774 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003755898.1 1804114 D 582899 CDS YP_003755899.1 300023288 9387668 1804791..1805213 1 NC_014313.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pla:Plav_3150 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 1805213 9387668 Hden_1775 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755899.1 1804791 D 582899 CDS YP_003755900.1 300023289 9387669 1805219..1805677 1 NC_014313.1 TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: rpt:Rpal_3217 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 1805677 9387669 Hden_1776 Hyphomicrobium denitrificans ATCC 51888 7-cyano-7-deazaguanine reductase YP_003755900.1 1805219 D 582899 CDS YP_003755901.1 300023290 9387670 complement(1805721..1806014) 1 NC_014313.1 KEGG: mno:Mnod_1552 VrrB protein; hypothetical protein 1806014 9387670 Hden_1777 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755901.1 1805721 R 582899 CDS YP_003755902.1 300023291 9387671 complement(1806317..1807252) 1 NC_014313.1 PFAM: pirin; KEGG: mdi:METDI0066 pirin-like protein; pirin 1807252 9387671 Hden_1778 Hyphomicrobium denitrificans ATCC 51888 pirin YP_003755902.1 1806317 R 582899 CDS YP_003755903.1 300023292 9387672 1807409..1807813 1 NC_014313.1 PFAM: protein of unknown function DUF1311; KEGG: rhi:NGR_c25020 urease-associated protein; hypothetical protein 1807813 9387672 Hden_1779 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755903.1 1807409 D 582899 CDS YP_003755904.1 300023293 9387673 1808005..1808502 1 NC_014313.1 PFAM: protein of unknown function DUF992; KEGG: oca:OCAR_7171 hypothetical protein; hypothetical protein 1808502 9387673 Hden_1780 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755904.1 1808005 D 582899 CDS YP_003755905.1 300023294 9387674 complement(1808499..1810451) 1 NC_014313.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); threonyl/alanyl tRNA synthetase SAD; TGS domain protein; anticodon-binding domain protein; KEGG: msl:Msil_3538 threonyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase SAD; threonyl-tRNA synthetase 1810451 9387674 Hden_1781 Hyphomicrobium denitrificans ATCC 51888 threonyl-tRNA synthetase YP_003755905.1 1808499 R 582899 CDS YP_003755906.1 300023295 9387675 1810683..1811165 1 NC_014313.1 KEGG: tkm:TK90_0176 glycogen/starch/alpha-glucan phosphorylase; hypothetical protein 1811165 9387675 Hden_1782 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755906.1 1810683 D 582899 CDS YP_003755907.1 300023296 9387676 complement(1811141..1811446) 1 NC_014313.1 PFAM: protein of unknown function DUF37; KEGG: pla:Plav_2667 hypothetical protein; hypothetical protein 1811446 9387676 Hden_1783 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755907.1 1811141 R 582899 CDS YP_003755908.1 300023297 9387677 complement(1811564..1812226) 1 NC_014313.1 KEGG: prw:PsycPRwf_1942 hypothetical protein; hypothetical protein 1812226 9387677 Hden_1784 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755908.1 1811564 R 582899 CDS YP_003755909.1 300023298 9387678 complement(1812475..1812933) 1 NC_014313.1 KEGG: mrd:Mrad2831_4640 NifU domain-containing protein; NifU domain-containing protein 1812933 9387678 Hden_1785 Hyphomicrobium denitrificans ATCC 51888 NifU domain-containing protein YP_003755909.1 1812475 R 582899 CDS YP_003755910.1 300023299 9387679 1813069..1813680 1 NC_014313.1 TIGRFAM: GTP cyclohydrolase I; KEGG: pzu:PHZ_c0417 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; GTP cyclohydrolase I 1813680 9387679 Hden_1786 Hyphomicrobium denitrificans ATCC 51888 GTP cyclohydrolase I YP_003755910.1 1813069 D 582899 CDS YP_003755911.1 300023300 9387680 1813705..1814154 1 NC_014313.1 KEGG: oan:Oant_2159 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 1814154 9387680 Hden_1787 Hyphomicrobium denitrificans ATCC 51888 phosphoribosyl-AMP cyclohydrolase YP_003755911.1 1813705 D 582899 CDS YP_003755912.1 300023301 9387681 1814333..1815352 1 NC_014313.1 PFAM: patatin; KEGG: xau:Xaut_1647 patatin; patatin 1815352 9387681 Hden_1788 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003755912.1 1814333 D 582899 CDS YP_003755913.1 300023302 9387682 complement(1815334..1815765) 1 NC_014313.1 KEGG: pla:Plav_2661 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; signal transduction protein 1815765 9387682 Hden_1789 Hyphomicrobium denitrificans ATCC 51888 signal transduction protein YP_003755913.1 1815334 R 582899 CDS YP_003755914.1 300023303 9387683 complement(1815944..1816672) 1 NC_014313.1 PFAM: rhomboid family protein; KEGG: pla:Plav_2653 rhomboid family protein; rhomboid family protein 1816672 9387683 Hden_1790 Hyphomicrobium denitrificans ATCC 51888 rhomboid family protein YP_003755914.1 1815944 R 582899 CDS YP_003755915.1 300023304 9387684 1816884..1817516 1 NC_014313.1 PFAM: protein of unknown function DUF1457; KEGG: mes:Meso_1724 hypothetical protein; hypothetical protein 1817516 9387684 Hden_1791 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755915.1 1816884 D 582899 CDS YP_003755916.1 300023305 9387685 1817700..1818326 1 NC_014313.1 PFAM: type IV pilus assembly PilZ; KEGG: mrd:Mrad2831_4632 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1818326 9387685 Hden_1792 Hyphomicrobium denitrificans ATCC 51888 type IV pilus assembly PilZ YP_003755916.1 1817700 D 582899 CDS YP_003755917.1 300023306 9387686 1818486..1819172 1 NC_014313.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: azc:AZC_3670 transglutaminase-like cysteine peptidase; transglutaminase 1819172 9387686 Hden_1793 Hyphomicrobium denitrificans ATCC 51888 transglutaminase YP_003755917.1 1818486 D 582899 CDS YP_003755918.1 300023307 9387687 complement(1819279..1819812) 1 NC_014313.1 KEGG: pla:Plav_2634 hexapaptide repeat-containing transferase; transferase 1819812 9387687 Hden_1794 Hyphomicrobium denitrificans ATCC 51888 transferase YP_003755918.1 1819279 R 582899 CDS YP_003755919.1 300023308 9387688 complement(1819831..1820046) 1 NC_014313.1 KEGG: oan:Oant_1927 hypothetical protein; hypothetical protein 1820046 9387688 Hden_1795 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755919.1 1819831 R 582899 CDS YP_003755920.1 300023309 9387689 complement(1820068..1820895) 1 NC_014313.1 KEGG: rhi:NGR_c13220 serine acetyltransferase, CysE; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; serine O-acetyltransferase 1820895 9387689 Hden_1796 Hyphomicrobium denitrificans ATCC 51888 serine O-acetyltransferase YP_003755920.1 1820068 R 582899 CDS YP_003755921.1 300023310 9387690 1821125..1821925 1 NC_014313.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_2620 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1821925 9387690 Hden_1797 Hyphomicrobium denitrificans ATCC 51888 enoyl-CoA hydratase/isomerase YP_003755921.1 1821125 D 582899 CDS YP_003755922.1 300023311 9387691 1821922..1823061 1 NC_014313.1 PFAM: polysaccharide deacetylase; KEGG: azc:AZC_1060 polysaccharide deacetylase; polysaccharide deacetylase 1823061 9387691 Hden_1798 Hyphomicrobium denitrificans ATCC 51888 polysaccharide deacetylase YP_003755922.1 1821922 D 582899 CDS YP_003755923.1 300023312 9387692 1823078..1823560 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mag:amb3944 hypothetical protein; GCN5-like N-acetyltransferase 1823560 9387692 Hden_1799 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003755923.1 1823078 D 582899 CDS YP_003755924.1 300023313 9387693 complement(1824202..1826895) 1 NC_014313.1 PFAM: dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; manually curated; KEGG: azc:AZC_4341 B12-dependent methionine synthase; TIGRFAM: methionine synthase; methionine synthase 1826895 9387693 Hden_1800 Hyphomicrobium denitrificans ATCC 51888 methionine synthase YP_003755924.1 1824202 R 582899 CDS YP_003755925.1 300023314 9387694 complement(1826906..1827967) 1 NC_014313.1 PFAM: homocysteine S-methyltransferase; KEGG: pmy:Pmen_2159 B12-dependent methionine synthase; homocysteine S-methyltransferase 1827967 9387694 Hden_1801 Hyphomicrobium denitrificans ATCC 51888 homocysteine S-methyltransferase YP_003755925.1 1826906 R 582899 CDS YP_003755926.1 300023315 9387695 complement(1827996..1828913) 1 NC_014313.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: met:M446_4365 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1828913 9387695 Hden_1802 Hyphomicrobium denitrificans ATCC 51888 5,10-methylenetetrahydrofolate reductase YP_003755926.1 1827996 R 582899 CDS YP_003755927.1 300023316 9387696 complement(1828913..1829941) 1 NC_014313.1 KEGG: bmt:BSUIS_A1504 methyltransferase type 11; PFAM: methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 1829941 9387696 Hden_1803 Hyphomicrobium denitrificans ATCC 51888 ArsR family transcriptional regulator YP_003755927.1 1828913 R 582899 CDS YP_003755928.1 300023317 9387697 1830083..1830718 1 NC_014313.1 KEGG: fal:FRAAL4892 methyltransferase; hypothetical protein 1830718 9387697 Hden_1804 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755928.1 1830083 D 582899 CDS YP_003755929.1 300023318 9387698 1830843..1831445 1 NC_014313.1 PFAM: toluene tolerance family protein; KEGG: pla:Plav_2398 toluene tolerance family protein; toluene tolerance family protein 1831445 9387698 Hden_1805 Hyphomicrobium denitrificans ATCC 51888 toluene tolerance family protein YP_003755929.1 1830843 D 582899 CDS YP_003755930.1 300023319 9387699 1831716..1832432 1 NC_014313.1 KEGG: bfo:BRAFLDRAFT_90440 hypothetical protein; hypothetical protein 1832432 9387699 Hden_1806 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755930.1 1831716 D 582899 CDS YP_003755931.1 300023320 9387700 1832595..1834463 1 NC_014313.1 KEGG: bbt:BBta_0007 hypothetical protein; hypothetical protein 1834463 9387700 Hden_1807 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755931.1 1832595 D 582899 CDS YP_003755932.1 300023321 9387701 complement(1834671..1836329) 1 NC_014313.1 KEGG: pla:Plav_2392 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 1836329 9387701 Hden_1808 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003755932.1 1834671 R 582899 CDS YP_003755933.1 300023322 9387702 complement(1836454..1837485) 1 NC_014313.1 PFAM: protein of unknown function DUF1022; KEGG: pla:Plav_2310 hypothetical protein; hypothetical protein 1837485 9387702 Hden_1809 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755933.1 1836454 R 582899 CDS YP_003755934.1 300023323 9387703 1837617..1838105 1 NC_014313.1 KEGG: rsk:RSKD131_2975 transcriptional regulator, AsnC family; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator 1838105 9387703 Hden_1810 Hyphomicrobium denitrificans ATCC 51888 AsnC family transcriptional regulator YP_003755934.1 1837617 D 582899 CDS YP_003755935.1 300023324 9387704 1838129..1838698 1 NC_014313.1 KEGG: sru:SRU_0793 hypothetical protein; hypothetical protein 1838698 9387704 Hden_1811 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755935.1 1838129 D 582899 CDS YP_003755936.1 300023325 9387705 complement(1838730..1839203) 1 NC_014313.1 KEGG: pla:Plav_2312 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; transcription elongation factor GreA 1839203 9387705 Hden_1812 Hyphomicrobium denitrificans ATCC 51888 transcription elongation factor GreA YP_003755936.1 1838730 R 582899 CDS YP_003755937.1 300023326 9387706 complement(1839345..1842620) 1 NC_014313.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: azc:AZC_1145 carbamoyl-phosphate synthase large subunit; SMART: MGS domain protein; carbamoyl-phosphate synthase, large subunit 1842620 9387706 Hden_1813 Hyphomicrobium denitrificans ATCC 51888 carbamoyl-phosphate synthase, large subunit YP_003755937.1 1839345 R 582899 CDS YP_003755938.1 300023327 9387707 complement(1842785..1843999) 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2687 fosmidomycin resistance protein; major facilitator superfamily protein 1843999 9387707 Hden_1814 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003755938.1 1842785 R 582899 CDS YP_003755939.1 300023328 9387708 complement(1844126..1844887) 1 NC_014313.1 KEGG: mmi:MMAR_5455 hypothetical protein; hypothetical protein 1844887 9387708 Hden_1815 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755939.1 1844126 R 582899 CDS YP_003755940.1 300023329 9387709 complement(1844925..1845548) 1 NC_014313.1 KEGG: bid:Bind_1052 peptidase M22 glycoprotease; hypothetical protein 1845548 9387709 Hden_1816 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755940.1 1844925 R 582899 CDS YP_003755941.1 300023330 9387710 complement(1845662..1846861) 1 NC_014313.1 KEGG: pla:Plav_2314 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase, small subunit 1846861 9387710 Hden_1817 Hyphomicrobium denitrificans ATCC 51888 carbamoyl-phosphate synthase, small subunit YP_003755941.1 1845662 R 582899 CDS YP_003755942.1 300023331 9387711 1847031..1847468 1 NC_014313.1 PFAM: protein of unknown function; KEGG: bte:BTH_II0619 GatB/YqeY family protein; hypothetical protein 1847468 9387711 Hden_1818 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755942.1 1847031 D 582899 CDS YP_003755943.1 300023332 9387712 1847612..1849597 1 NC_014313.1 TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; DNA primase, DnaB-helicase binding domain; TOPRIM domain protein; KEGG: bra:BRADO1353 DNA primase; SMART: Toprim sub domain protein; DNA primase 1849597 9387712 Hden_1819 Hyphomicrobium denitrificans ATCC 51888 DNA primase YP_003755943.1 1847612 D 582899 CDS YP_003755944.1 300023333 9387713 1849710..1851710 1 NC_014313.1 KEGG: pla:Plav_2317 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 1.1 domain protein; sigma-70 non-essential domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; RNA polymerase, sigma 70 subunit, RpoD 1851710 9387713 Hden_1820 Hyphomicrobium denitrificans ATCC 51888 RNA polymerase, sigma 70 subunit, RpoD YP_003755944.1 1849710 D 582899 CDS YP_003755945.1 300023334 9387714 complement(1851767..1852081) 1 NC_014313.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: vap:Vapar_4718 ethyl tert-butyl ether degradation EthD; Ethyl tert-butyl ether degradation EthD 1852081 9387714 Hden_1821 Hyphomicrobium denitrificans ATCC 51888 Ethyl tert-butyl ether degradation EthD YP_003755945.1 1851767 R 582899 CDS YP_003755946.1 300023335 9387715 complement(1852189..1852647) 1 NC_014313.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rpc:RPC_1206 GreA/GreB family elongation factor; GreA/GreB family elongation factor 1852647 9387715 Hden_1822 Hyphomicrobium denitrificans ATCC 51888 GreA/GreB family elongation factor YP_003755946.1 1852189 R 582899 CDS YP_003755947.1 300023336 9387716 1852685..1853104 1 NC_014313.1 PFAM: protein of unknown function UPF0047; KEGG: msl:Msil_2118 protein of unknown function UPF0047; hypothetical protein 1853104 9387716 Hden_1823 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755947.1 1852685 D 582899 CDS YP_003755948.1 300023337 9387717 1853260..1853694 1 NC_014313.1 PFAM: protein of unknown function DUF1486; KEGG: har:HEAR2043 hypothetical protein; hypothetical protein 1853694 9387717 Hden_1824 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755948.1 1853260 D 582899 CDS YP_003755949.1 300023338 9387718 1853709..1854317 1 NC_014313.1 KEGG: pde:Pden_2129 hypothetical protein; hypothetical protein 1854317 9387718 Hden_1825 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755949.1 1853709 D 582899 CDS YP_003755950.1 300023339 9387719 1854314..1855225 1 NC_014313.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nar:Saro_1044 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1855225 9387719 Hden_1826 Hyphomicrobium denitrificans ATCC 51888 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003755950.1 1854314 D 582899 CDS YP_003755951.1 300023340 9387720 complement(1855234..1855971) 1 NC_014313.1 PFAM: protein of unknown function DUF541; KEGG: pde:Pden_1932 hypothetical protein; hypothetical protein 1855971 9387720 Hden_1827 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755951.1 1855234 R 582899 CDS YP_003755952.1 300023341 9387722 1856666..1858057 1 NC_014313.1 PFAM: citrate transporter; KEGG: divalent ion symporter; citrate transporter 1858057 9387722 Hden_1828 Hyphomicrobium denitrificans ATCC 51888 citrate transporter YP_003755952.1 1856666 D 582899 CDS YP_003755953.1 300023342 9387723 1858246..1858545 1 NC_014313.1 KEGG: tcr:504081.50 mucin-associated surface protein (MASP); mucin-associated surface protein (MASP) 1858545 9387723 Hden_1829 Hyphomicrobium denitrificans ATCC 51888 mucin-associated surface protein (MASP) YP_003755953.1 1858246 D 582899 CDS YP_003755954.1 300023343 9387724 complement(1858648..1859001) 1 NC_014313.1 KEGG: oca:OCAR_6547 membrane protein; manually curated; PFAM: protein of unknown function DUF454; hypothetical protein 1859001 9387724 Hden_1830 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755954.1 1858648 R 582899 CDS YP_003755955.1 300023344 9387725 1859188..1859592 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_d04650 hypothetical protein; GCN5-like N-acetyltransferase 1859592 9387725 Hden_1831 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003755955.1 1859188 D 582899 CDS YP_003755956.1 300023345 9387726 complement(1859602..1860750) 1 NC_014313.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: oca:OCAR_7167 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 1860750 9387726 Hden_1832 Hyphomicrobium denitrificans ATCC 51888 FMN-dependent alpha-hydroxy acid dehydrogenase YP_003755956.1 1859602 R 582899 CDS YP_003755957.1 300023346 9387727 complement(1860793..1861170) 1 NC_014313.1 PFAM: protein of unknown function DUF369; KEGG: sfu:Sfum_3204 hypothetical protein; hypothetical protein 1861170 9387727 Hden_1833 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755957.1 1860793 R 582899 CDS YP_003755958.1 300023347 9387728 complement(1861442..1862686) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: rru:Rru_A0045 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase 1862686 9387728 Hden_1834 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003755958.1 1861442 R 582899 CDS YP_003755959.1 300023348 9387729 complement(1862780..1863049) 1 NC_014313.1 PFAM: phosphopantetheine-binding; KEGG: mlo:mlr4951 NodF; phosphopantetheine-binding protein 1863049 9387729 Hden_1835 Hyphomicrobium denitrificans ATCC 51888 phosphopantetheine-binding protein YP_003755959.1 1862780 R 582899 CDS YP_003755960.1 300023349 9387730 1863366..1865078 1 NC_014313.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rru:Rru_A1312 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1865078 9387730 Hden_1836 Hyphomicrobium denitrificans ATCC 51888 AMP-dependent synthetase and ligase YP_003755960.1 1863366 D 582899 CDS YP_003755961.1 300023350 9387731 complement(1865763..1867172) 1 NC_014313.1 TIGRFAM: cysteinyl-tRNA synthetase; KEGG: bbt:BBta_3498 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase 1867172 9387731 Hden_1837 Hyphomicrobium denitrificans ATCC 51888 cysteinyl-tRNA synthetase YP_003755961.1 1865763 R 582899 CDS YP_003755962.1 300023351 9387732 1867459..1868661 1 NC_014313.1 KEGG: rpa:RPA1995 hypothetical protein; hypothetical protein 1868661 9387732 Hden_1838 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755962.1 1867459 D 582899 CDS YP_003755963.1 300023352 9387733 complement(1868692..1870062) 1 NC_014313.1 KEGG: mch:Mchl_5220 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1870062 9387733 Hden_1839 Hyphomicrobium denitrificans ATCC 51888 glutamyl-tRNA synthetase YP_003755963.1 1868692 R 582899 CDS YP_003755964.1 300023353 9387734 complement(1870130..1871857) 1 NC_014313.1 KEGG: pla:Plav_1103 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 1871857 9387734 Hden_1840 Hyphomicrobium denitrificans ATCC 51888 NAD+ synthetase YP_003755964.1 1870130 R 582899 CDS YP_003755965.1 300023354 9387735 complement(1871954..1872367) 1 NC_014313.1 PFAM: UspA domain protein; KEGG: rxy:Rxyl_2521 hypothetical protein; UspA domain-containing protein 1872367 9387735 Hden_1841 Hyphomicrobium denitrificans ATCC 51888 UspA domain-containing protein YP_003755965.1 1871954 R 582899 CDS YP_003755966.1 300023355 9387736 complement(1872542..1872700) 1 NC_014313.1 hypothetical protein 1872700 9387736 Hden_1842 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755966.1 1872542 R 582899 CDS YP_003755967.1 300023356 9387737 complement(1872789..1874192) 1 NC_014313.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: mes:Meso_1462 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 1874192 9387737 Hden_1843 Hyphomicrobium denitrificans ATCC 51888 phospho-2-dehydro-3-deoxyheptonate aldolase YP_003755967.1 1872789 R 582899 CDS YP_003755968.1 300023357 9387738 complement(1874326..1875081) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eat:EAT1b_1814 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1875081 9387738 Hden_1844 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003755968.1 1874326 R 582899 CDS YP_003755969.1 300023358 9387739 complement(1875137..1876516) 1 NC_014313.1 KEGG: msl:Msil_0122 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glutathione-disulfide reductase 1876516 9387739 Hden_1845 Hyphomicrobium denitrificans ATCC 51888 glutathione-disulfide reductase YP_003755969.1 1875137 R 582899 CDS YP_003755970.1 300023359 9387740 complement(1876533..1877051) 1 NC_014313.1 PFAM: protein of unknown function DUF2059; KEGG: xau:Xaut_3222 hypothetical protein; hypothetical protein 1877051 9387740 Hden_1846 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755970.1 1876533 R 582899 CDS YP_003755971.1 300023360 9387741 complement(1877051..1877776) 1 NC_014313.1 TIGRFAM: ribose 5-phosphate isomerase; KEGG: msl:Msil_0120 ribose 5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 1877776 9387741 Hden_1847 Hyphomicrobium denitrificans ATCC 51888 ribose 5-phosphate isomerase YP_003755971.1 1877051 R 582899 CDS YP_003755972.1 300023361 9387742 1877947..1878630 1 NC_014313.1 KEGG: mes:Meso_1458 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; phosphoglycolate phosphatase 1878630 9387742 Hden_1848 Hyphomicrobium denitrificans ATCC 51888 phosphoglycolate phosphatase YP_003755972.1 1877947 D 582899 CDS YP_003755973.1 300023362 9387743 complement(1878620..1878997) 1 NC_014313.1 KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein 1878997 9387743 Hden_1849 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755973.1 1878620 R 582899 CDS YP_003755974.1 300023363 9387744 complement(1879070..1881382) 1 NC_014313.1 KEGG: msl:Msil_0077 membrane transporter; membrane transporter 1881382 9387744 Hden_1850 Hyphomicrobium denitrificans ATCC 51888 membrane transporter YP_003755974.1 1879070 R 582899 CDS YP_003755975.1 300023364 9387746 1881857..1882405 1 NC_014313.1 KEGG: reu:Reut_A2882 lipoprotein; lipoprotein 1882405 9387746 Hden_1851 Hyphomicrobium denitrificans ATCC 51888 lipoprotein YP_003755975.1 1881857 D 582899 CDS YP_003755976.1 300023365 9387747 1882501..1883244 1 NC_014313.1 TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ara:Arad_4067 peptide methionine sulfoxide reductase protein; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1883244 9387747 Hden_1852 Hyphomicrobium denitrificans ATCC 51888 peptide methionine sulfoxide reductase YP_003755976.1 1882501 D 582899 CDS YP_003755977.1 300023366 9387748 complement(1883373..1884551) 1 NC_014313.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pzu:PHZ_c3319 ornithine decarboxylase; Orn/DAP/Arg decarboxylase 2 1884551 9387748 Hden_1853 Hyphomicrobium denitrificans ATCC 51888 Orn/DAP/Arg decarboxylase 2 YP_003755977.1 1883373 R 582899 CDS YP_003755978.1 300023367 9387749 complement(1884777..1887134) 1 NC_014313.1 KEGG: rba:RB617 WD-40 repeat-containing regulatory protein; hypothetical protein 1887134 9387749 Hden_1854 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755978.1 1884777 R 582899 CDS YP_003755979.1 300023368 9387750 1887442..1887606 1 NC_014313.1 hypothetical protein 1887606 9387750 Hden_1855 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755979.1 1887442 D 582899 CDS YP_003755980.1 300023369 9387751 complement(1887705..1888940) 1 NC_014313.1 KEGG: bja:bll4731 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; threonine dehydratase 1888940 9387751 Hden_1856 Hyphomicrobium denitrificans ATCC 51888 threonine dehydratase YP_003755980.1 1887705 R 582899 CDS YP_003755981.1 300023370 9387752 1889160..1889819 1 NC_014313.1 KEGG: ade:Adeh_4032 general secretory system II, protein E-like; hypothetical protein 1889819 9387752 Hden_1857 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755981.1 1889160 D 582899 CDS YP_003755982.1 300023371 9387753 1889918..1890811 1 NC_014313.1 KEGG: bmr:BMI_I948 oxidoreductase, PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1890811 9387753 Hden_1858 Hyphomicrobium denitrificans ATCC 51888 3-hydroxyisobutyrate dehydrogenase YP_003755982.1 1889918 D 582899 CDS YP_003755983.1 300023372 9387754 complement(1890824..1891324) 1 NC_014313.1 KEGG: bmr:BMI_I865 transcriptional regulator, AsnC family; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator 1891324 9387754 Hden_1859 Hyphomicrobium denitrificans ATCC 51888 AsnC family transcriptional regulator YP_003755983.1 1890824 R 582899 CDS YP_003755984.1 300023373 9387755 complement(1891434..1892045) 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: mlo:mll0559 glutathione S-transferase; glutathione S-transferase 1892045 9387755 Hden_1860 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003755984.1 1891434 R 582899 CDS YP_003755985.1 300023374 9387756 complement(1892051..1892617) 1 NC_014313.1 PFAM: nuclease (SNase domain protein); KEGG: mlo:mll0560 succinoglycan biotynthesis protein ExoI; nuclease 1892617 9387756 Hden_1861 Hyphomicrobium denitrificans ATCC 51888 nuclease YP_003755985.1 1892051 R 582899 CDS YP_003755986.1 300023375 9387757 1892683..1894344 1 NC_014313.1 KEGG: rpb:RPB_3395 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1894344 9387757 Hden_1862 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003755986.1 1892683 D 582899 CDS YP_003755987.1 300023376 9387758 1894351..1895055 1 NC_014313.1 KEGG: mrd:Mrad2831_1975 transmembrane signal peptide protein; aspartyl protease-like protein 1895055 9387758 Hden_1863 Hyphomicrobium denitrificans ATCC 51888 aspartyl protease-like protein YP_003755987.1 1894351 D 582899 CDS YP_003755988.1 300023377 9387759 1895099..1895668 1 NC_014313.1 KEGG: mrd:Mrad2831_0576 hypothetical protein; aspartyl protease-like protein 1895668 9387759 Hden_1864 Hyphomicrobium denitrificans ATCC 51888 aspartyl protease-like protein YP_003755988.1 1895099 D 582899 CDS YP_003755989.1 300023378 9387760 1895775..1897280 1 NC_014313.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: pla:Plav_1053 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 1897280 9387760 Hden_1865 Hyphomicrobium denitrificans ATCC 51888 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II YP_003755989.1 1895775 D 582899 CDS YP_003755990.1 300023379 9387761 complement(1897380..1898204) 1 NC_014313.1 PFAM: protein of unknown function DUF81; KEGG: atc:AGR_C_3499 hypothetical protein; hypothetical protein 1898204 9387761 Hden_1866 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755990.1 1897380 R 582899 CDS YP_003755991.1 300023380 9387762 complement(1898214..1899221) 1 NC_014313.1 manually curated; TIGRFAM: TIM-barrel protein, yjbN family; KEGG: bja:blr3734 tRNA-dihydrouridine synthase A; PFAM: dihydrouridine synthase DuS; TIM-barrel protein, yjbN family 1899221 9387762 Hden_1867 Hyphomicrobium denitrificans ATCC 51888 TIM-barrel protein, yjbN family YP_003755991.1 1898214 R 582899 CDS YP_003755992.1 300023381 9387763 complement(1899369..1900043) 1 NC_014313.1 PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: xau:Xaut_5027 MOSC domain-containing protein; MOSC domain containing protein 1900043 9387763 Hden_1868 Hyphomicrobium denitrificans ATCC 51888 MOSC domain containing protein YP_003755992.1 1899369 R 582899 CDS YP_003755993.1 300023382 9387764 complement(1900170..1901993) 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mrd:Mrad2831_0508 methanol/ethanol family PQQ-dependent dehydrogenase; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 1901993 9387764 Hden_1869 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003755993.1 1900170 R 582899 CDS YP_003755994.1 300023383 9387765 1902350..1903867 1 NC_014313.1 KEGG: nhl:Nhal_1084 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1903867 9387765 Hden_1870 Hyphomicrobium denitrificans ATCC 51888 GntR family transcriptional regulator YP_003755994.1 1902350 D 582899 CDS YP_003755995.1 300023384 9387766 complement(1903886..1904599) 1 NC_014313.1 KEGG: mlo:mll6632 Fnr-type transcriptional regulator; PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 1904599 9387766 Hden_1871 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003755995.1 1903886 R 582899 CDS YP_003755996.1 300023385 9387767 1904803..1905582 1 NC_014313.1 PFAM: periplasmic binding protein; KEGG: met:M446_4715 periplasmic binding protein; periplasmic binding protein 1905582 9387767 Hden_1872 Hyphomicrobium denitrificans ATCC 51888 periplasmic binding protein YP_003755996.1 1904803 D 582899 CDS YP_003755997.1 300023386 9387768 1905596..1906417 1 NC_014313.1 KEGG: azl:AZL_000720 hypothetical protein; hypothetical protein 1906417 9387768 Hden_1873 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755997.1 1905596 D 582899 CDS YP_003755998.1 300023387 9387769 1906522..1907817 1 NC_014313.1 PFAM: protein of unknown function DUF2130; KEGG: rpb:RPB_0215 hypothetical protein; hypothetical protein 1907817 9387769 Hden_1874 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003755998.1 1906522 D 582899 CDS YP_003755999.1 300023388 9387772 1908727..1909266 1 NC_014313.1 KEGG: mno:Mnod_4915 formaldehyde-activating enzyme; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme 1909266 9387772 Hden_1875 Hyphomicrobium denitrificans ATCC 51888 formaldehyde-activating enzyme YP_003755999.1 1908727 D 582899 CDS YP_003756000.1 300023389 9387773 1909514..1909717 1 NC_014313.1 KEGG: bmr:BMI_I1417 hypothetical protein; hypothetical protein 1909717 9387773 Hden_1876 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756000.1 1909514 D 582899 CDS YP_003756001.1 300023390 9387774 complement(1909712..1910701) 1 NC_014313.1 PFAM: ApbE family lipoprotein; KEGG: bbt:BBta_6013 nitrous oxide reductase accessory protein NosX (required for nitrous oxide reduction), ApbE-like lipoprotein; ApbE family lipoprotein 1910701 9387774 Hden_1877 Hyphomicrobium denitrificans ATCC 51888 ApbE family lipoprotein YP_003756001.1 1909712 R 582899 CDS YP_003756002.1 300023391 9387775 complement(1910711..1911262) 1 NC_014313.1 PFAM: NosL family protein; KEGG: rpt:Rpal_2355 NosL family protein; NosL family protein 1911262 9387775 Hden_1878 Hyphomicrobium denitrificans ATCC 51888 NosL family protein YP_003756002.1 1910711 R 582899 CDS YP_003756003.1 300023392 9387776 complement(1911259..1912089) 1 NC_014313.1 KEGG: bbt:BBta_6011 copper ABC transporter permease protein NosY; copper ABC transporter permease 1912089 9387776 Hden_1879 Hyphomicrobium denitrificans ATCC 51888 copper ABC transporter permease YP_003756003.1 1911259 R 582899 CDS YP_003756004.1 300023393 9387777 complement(1912086..1913009) 1 NC_014313.1 KEGG: bbt:BBta_6010 copper ABC transporter ATP-binding protein NosF; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 1913009 9387777 Hden_1880 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756004.1 1912086 R 582899 CDS YP_003756005.1 300023394 9387778 complement(1913006..1914397) 1 NC_014313.1 KEGG: bja:blr0316 periplasmic copper-binding precursor; PFAM: periplasmic copper-binding; SMART: carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; periplasmic copper-binding protein 1914397 9387778 Hden_1881 Hyphomicrobium denitrificans ATCC 51888 periplasmic copper-binding protein YP_003756005.1 1913006 R 582899 CDS YP_003756006.1 300023395 9387779 complement(1914410..1916335) 1 NC_014313.1 KEGG: oca:OCAR_5030 nitrous-oxide reductase; PFAM: cytochrome C oxidase subunit II; nitrous-oxide reductase 1916335 9387779 Hden_1882 Hyphomicrobium denitrificans ATCC 51888 nitrous-oxide reductase YP_003756006.1 1914410 R 582899 CDS YP_003756007.1 300023396 9387780 complement(1916377..1918647) 1 NC_014313.1 PFAM: FMN-binding domain protein; KEGG: met:M446_2862 FMN-binding domain-containing protein; nitrous oxide expression regulator, NosR 1918647 9387780 Hden_1883 Hyphomicrobium denitrificans ATCC 51888 nitrous oxide expression regulator, NosR YP_003756007.1 1916377 R 582899 CDS YP_003756008.1 300023397 9387781 1918761..1919621 1 NC_014313.1 KEGG: bja:bll0313 hypothetical protein; hypothetical protein 1919621 9387781 Hden_1884 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756008.1 1918761 D 582899 CDS YP_003756009.1 300023398 9387782 1919930..1920655 1 NC_014313.1 KEGG: kfl:Kfla_4282 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 1920655 9387782 Hden_1885 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003756009.1 1919930 D 582899 CDS YP_003756010.1 300023399 9387783 complement(1920686..1921369) 1 NC_014313.1 KEGG: swi:Swit_1007 short-chain dehydrogenase/reductase SDR; hypothetical protein 1921369 9387783 Hden_1886 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756010.1 1920686 R 582899 CDS YP_003756011.1 300023400 9387784 complement(1921615..1926057) 1 NC_014313.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: xau:Xaut_2793 outer membrane autotransporter; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 1926057 9387784 Hden_1887 Hyphomicrobium denitrificans ATCC 51888 outer membrane autotransporter barrel domain-containing protein YP_003756011.1 1921615 R 582899 CDS YP_003756012.1 300023401 9387785 complement(1927014..1927256) 1 NC_014313.1 KEGG: pmy:Pmen_3932 hypothetical protein; hypothetical protein 1927256 9387785 Hden_1888 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756012.1 1927014 R 582899 CDS YP_003756013.1 300023402 9387786 1927426..1927821 1 NC_014313.1 PFAM: type IV pilus assembly PilZ; KEGG: drm:Dred_1474 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1927821 9387786 Hden_1889 Hyphomicrobium denitrificans ATCC 51888 type IV pilus assembly PilZ YP_003756013.1 1927426 D 582899 CDS YP_003756014.1 300023403 9387787 1928036..1928944 1 NC_014313.1 KEGG: bcs:BCAN_A0513 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 1928944 9387787 Hden_1890 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase domain-containing protein YP_003756014.1 1928036 D 582899 CDS YP_003756015.1 300023404 9387788 complement(1928784..1929839) 1 NC_014313.1 PFAM: protein of unknown function DUF1499; KEGG: rpd:RPD_1266 hypothetical protein; hypothetical protein 1929839 9387788 Hden_1891 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756015.1 1928784 R 582899 CDS YP_003756016.1 300023405 9387789 complement(1929951..1930601) 1 NC_014313.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: azc:AZC_1197 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxine 5'-phosphate oxidase dimerisation-like; pyridoxamine 5'-phosphate oxidase 1930601 9387789 Hden_1892 Hyphomicrobium denitrificans ATCC 51888 pyridoxamine 5'-phosphate oxidase YP_003756016.1 1929951 R 582899 CDS YP_003756017.1 300023406 9387790 1930755..1931195 1 NC_014313.1 KEGG: aha:AHA_3058 17 kDa antigen; hypothetical protein 1931195 9387790 Hden_1893 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756017.1 1930755 D 582899 CDS YP_003756018.1 300023407 9387791 1931711..1931986 1 NC_014313.1 KEGG: ddc:Dd586_0395 SinR-like protein; SinR-like protein 1931986 9387791 Hden_1894 Hyphomicrobium denitrificans ATCC 51888 SinR-like protein YP_003756018.1 1931711 D 582899 CDS YP_003756019.1 300023408 9387792 1932056..1932250 1 NC_014313.1 KEGG: vei:Veis_1811 regulatory proteins, IclR; regulatory protein 1932250 9387792 Hden_1895 Hyphomicrobium denitrificans ATCC 51888 regulatory protein YP_003756019.1 1932056 D 582899 CDS YP_003756020.1 300023409 9387793 1932681..1932812 1 NC_014313.1 hypothetical protein 1932812 9387793 Hden_1896 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756020.1 1932681 D 582899 CDS YP_003756021.1 300023410 9387794 1932812..1933045 1 NC_014313.1 KEGG: pkn:PKH_142610 RNA-binding protein; RNA-binding protein 1933045 9387794 Hden_1897 Hyphomicrobium denitrificans ATCC 51888 RNA-binding protein YP_003756021.1 1932812 D 582899 CDS YP_003756022.1 300023411 9387795 complement(1933047..1933922) 1 NC_014313.1 KEGG: mca:MCA0033 DNA-damage-inducible protein D; DNA-damage-inducible protein D 1933922 9387795 Hden_1898 Hyphomicrobium denitrificans ATCC 51888 DNA-damage-inducible protein D YP_003756022.1 1933047 R 582899 CDS YP_003756023.1 300023412 9387798 1935561..1936280 1 NC_014313.1 KEGG: ara:Arad_2240 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24/S26A/S26B, conserved region; LexA DNA-binding domain protein; LexA family transcriptional repressor 1936280 9387798 Hden_1901 Hyphomicrobium denitrificans ATCC 51888 LexA family transcriptional repressor YP_003756023.1 1935561 D 582899 CDS YP_003756024.1 300023413 9387799 complement(1936274..1938613) 1 NC_014313.1 KEGG: pla:Plav_3179 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein 1938613 9387799 Hden_1902 Hyphomicrobium denitrificans ATCC 51888 ComEC/Rec2-like protein YP_003756024.1 1936274 R 582899 CDS YP_003756025.1 300023414 9387800 1938725..1940269 1 NC_014313.1 KEGG: bmr:BMI_I1158 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1940269 9387800 Hden_1903 Hyphomicrobium denitrificans ATCC 51888 glutamyl-tRNA synthetase YP_003756025.1 1938725 D 582899 CDS YP_003756026.1 300023415 9387801 1940468..1941793 1 NC_014313.1 KEGG: sme:SMc02087 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: citrate synthase; citrate synthase I 1941793 9387801 Hden_1904 Hyphomicrobium denitrificans ATCC 51888 citrate synthase I YP_003756026.1 1940468 D 582899 CDS YP_003756027.1 300023416 9387802 complement(1941751..1942983) 1 NC_014313.1 TIGRFAM: lipid-A-disaccharide synthase; KEGG: met:M446_0645 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase 1942983 9387802 Hden_1905 Hyphomicrobium denitrificans ATCC 51888 lipid-A-disaccharide synthase YP_003756027.1 1941751 R 582899 CDS YP_003756028.1 300023417 9387803 complement(1942976..1944253) 1 NC_014313.1 PFAM: protein of unknown function DUF1009; KEGG: bja:bll4848 hypothetical protein; hypothetical protein 1944253 9387803 Hden_1906 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756028.1 1942976 R 582899 CDS YP_003756029.1 300023418 9387804 complement(1944263..1945069) 1 NC_014313.1 TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: met:M446_0643 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1945069 9387804 Hden_1907 Hyphomicrobium denitrificans ATCC 51888 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_003756029.1 1944263 R 582899 CDS YP_003756030.1 300023419 9387805 complement(1945062..1945565) 1 NC_014313.1 KEGG: smd:Smed_1140 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 1945565 9387805 Hden_1908 Hyphomicrobium denitrificans ATCC 51888 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_003756030.1 1945062 R 582899 CDS YP_003756031.1 300023420 9387806 complement(1945622..1946683) 1 NC_014313.1 KEGG: met:M446_0641 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1946683 9387806 Hden_1909 Hyphomicrobium denitrificans ATCC 51888 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_003756031.1 1945622 R 582899 CDS YP_003756032.1 300023421 9387807 complement(1946857..1949244) 1 NC_014313.1 KEGG: azc:AZC_1701 outer membrane protein precursor; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; outer membrane protein assembly complex, YaeT protein 1949244 9387807 Hden_1910 Hyphomicrobium denitrificans ATCC 51888 outer membrane protein assembly complex, YaeT protein YP_003756032.1 1946857 R 582899 CDS YP_003756033.1 300023422 9387808 complement(1949544..1950689) 1 NC_014313.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: rpt:Rpal_3261 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease 1950689 9387808 Hden_1911 Hyphomicrobium denitrificans ATCC 51888 membrane-associated zinc metalloprotease YP_003756033.1 1949544 R 582899 CDS YP_003756034.1 300023423 9387809 complement(1950758..1952008) 1 NC_014313.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: swi:Swit_0466 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1952008 9387809 Hden_1912 Hyphomicrobium denitrificans ATCC 51888 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003756034.1 1950758 R 582899 CDS YP_003756035.1 300023424 9387810 complement(1952008..1952883) 1 NC_014313.1 PFAM: phosphatidate cytidylyltransferase; KEGG: xau:Xaut_4434 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1952883 9387810 Hden_1913 Hyphomicrobium denitrificans ATCC 51888 phosphatidate cytidylyltransferase YP_003756035.1 1952008 R 582899 CDS YP_003756036.1 300023425 9387811 complement(1952893..1953651) 1 NC_014313.1 TIGRFAM: undecaprenyl diphosphate synthase; KEGG: pla:Plav_3192 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1953651 9387811 Hden_1914 Hyphomicrobium denitrificans ATCC 51888 undecaprenyl diphosphate synthase YP_003756036.1 1952893 R 582899 CDS YP_003756037.1 300023426 9387812 complement(1953732..1954295) 1 NC_014313.1 KEGG: pla:Plav_3193 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor 1954295 9387812 Hden_1915 Hyphomicrobium denitrificans ATCC 51888 ribosome recycling factor YP_003756037.1 1953732 R 582899 CDS YP_003756038.1 300023427 9387813 complement(1954379..1955113) 1 NC_014313.1 KEGG: pla:Plav_3194 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase 1955113 9387813 Hden_1916 Hyphomicrobium denitrificans ATCC 51888 uridylate kinase YP_003756038.1 1954379 R 582899 CDS YP_003756039.1 300023428 9387814 complement(1955201..1956136) 1 NC_014313.1 KEGG: mno:Mnod_1697 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor Ts 1956136 9387814 Hden_1917 Hyphomicrobium denitrificans ATCC 51888 translation elongation factor Ts YP_003756039.1 1955201 R 582899 CDS YP_003756040.1 300023429 9387815 complement(1956217..1957206) 1 NC_014313.1 KEGG: rpc:RPC_2436 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 1957206 9387815 Hden_1918 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S2 YP_003756040.1 1956217 R 582899 CDS YP_003756041.1 300023430 9387816 complement(1957596..1957961) 1 NC_014313.1 KEGG: acp:A2cp1_4222 hypothetical protein; hypothetical protein 1957961 9387816 Hden_1919 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756041.1 1957596 R 582899 CDS YP_003756042.1 300023431 9387817 complement(1958069..1958320) 1 NC_014313.1 KEGG: oan:Oant_4124 hypothetical protein; hypothetical protein 1958320 9387817 Hden_1920 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756042.1 1958069 R 582899 CDS YP_003756043.1 300023432 9387818 complement(1958470..1962012) 1 NC_014313.1 SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, subunit alpha; KEGG: bbt:BBta_4522 DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein; DNA polymerase III subunit alpha 1962012 9387818 Hden_1921 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunit alpha YP_003756043.1 1958470 R 582899 CDS YP_003756044.1 300023433 9387819 complement(1962079..1962804) 1 NC_014313.1 KEGG: mch:Mchl_1194 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 1962804 9387819 Hden_1922 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756044.1 1962079 R 582899 CDS YP_003756045.1 300023434 9387820 complement(1962810..1964081) 1 NC_014313.1 KEGG: nha:Nham_2196 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system, transmembrane protein, LolC/E family 1964081 9387820 Hden_1923 Hyphomicrobium denitrificans ATCC 51888 lipoprotein releasing system, transmembrane protein, LolC/E family YP_003756045.1 1962810 R 582899 CDS YP_003756046.1 300023435 9387821 complement(1964185..1965717) 1 NC_014313.1 TIGRFAM: prolyl-tRNA synthetase; KEGG: sal:Sala_1230 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); prolyl-tRNA synthetase, class II-like; anticodon-binding domain protein; prolyl-tRNA synthetase 1965717 9387821 Hden_1924 Hyphomicrobium denitrificans ATCC 51888 prolyl-tRNA synthetase YP_003756046.1 1964185 R 582899 CDS YP_003756047.1 300023436 9387822 complement(1965890..1966165) 1 NC_014313.1 PFAM: protein of unknown function DUF1467; KEGG: bid:Bind_1782 hypothetical protein; hypothetical protein 1966165 9387822 Hden_1925 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756047.1 1965890 R 582899 CDS YP_003756048.1 300023437 9387823 complement(1966208..1966612) 1 NC_014313.1 TIGRFAM: methylmalonyl-CoA epimerase; KEGG: mno:Mnod_4142 methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; methylmalonyl-CoA epimerase 1966612 9387823 Hden_1926 Hyphomicrobium denitrificans ATCC 51888 methylmalonyl-CoA epimerase YP_003756048.1 1966208 R 582899 CDS YP_003756049.1 300023438 9387824 complement(1966662..1968377) 1 NC_014313.1 KEGG: bbt:BBta_4546 metallo-beta-lactamase family hydrolase; PFAM: RNA-metabolising metallo-beta-lactamase; SMART: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase 1968377 9387824 Hden_1927 Hyphomicrobium denitrificans ATCC 51888 RNA-metabolising metallo-beta-lactamase YP_003756049.1 1966662 R 582899 CDS YP_003756050.1 300023439 9387825 complement(1968374..1969150) 1 NC_014313.1 KEGG: pla:Plav_3212 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; biotin/acetyl-CoA-carboxylase ligase 1969150 9387825 Hden_1928 Hyphomicrobium denitrificans ATCC 51888 biotin/acetyl-CoA-carboxylase ligase YP_003756050.1 1968374 R 582899 CDS YP_003756051.1 300023440 9387826 complement(1969155..1970615) 1 NC_014313.1 KEGG: mes:Meso_1035 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1970615 9387826 Hden_1929 Hyphomicrobium denitrificans ATCC 51888 proton-translocating NADH-quinone oxidoreductase subunit N YP_003756051.1 1969155 R 582899 CDS YP_003756052.1 300023441 9387827 complement(1970627..1972114) 1 NC_014313.1 KEGG: pla:Plav_3214 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1972114 9387827 Hden_1930 Hyphomicrobium denitrificans ATCC 51888 proton-translocating NADH-quinone oxidoreductase subunit M YP_003756052.1 1970627 R 582899 CDS YP_003756053.1 300023442 9387828 complement(1972111..1974069) 1 NC_014313.1 KEGG: azc:AZC_1679 NADH-plastoquinone oxidoreductase chain 5 protein; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/ubiquinone/plastoquinone (complex I); NADH-ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 1974069 9387828 Hden_1931 Hyphomicrobium denitrificans ATCC 51888 proton-translocating NADH-quinone oxidoreductase subunit L YP_003756053.1 1972111 R 582899 CDS YP_003756054.1 300023443 9387829 complement(1974156..1974464) 1 NC_014313.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ret:RHE_CH01615 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L 1974464 9387829 Hden_1932 Hyphomicrobium denitrificans ATCC 51888 NADH-ubiquinone oxidoreductase chain 4L YP_003756054.1 1974156 R 582899 CDS YP_003756055.1 300023444 9387830 complement(1974461..1975111) 1 NC_014313.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: ret:RHE_CH01614 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1975111 9387830 Hden_1933 Hyphomicrobium denitrificans ATCC 51888 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003756055.1 1974461 R 582899 CDS YP_003756056.1 300023445 9387831 complement(1975150..1975638) 1 NC_014313.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: pla:Plav_3218 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I 1975638 9387831 Hden_1934 Hyphomicrobium denitrificans ATCC 51888 NADH-quinone oxidoreductase subunit I YP_003756056.1 1975150 R 582899 CDS YP_003756057.1 300023446 9387832 complement(1975635..1976705) 1 NC_014313.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rle:RL1708 NADH dehydrogenase subunit H; respiratory-chain NADH dehydrogenase subunit 1 1976705 9387832 Hden_1935 Hyphomicrobium denitrificans ATCC 51888 respiratory-chain NADH dehydrogenase subunit 1 YP_003756057.1 1975635 R 582899 CDS YP_003756058.1 300023447 9387833 complement(1976711..1978804) 1 NC_014313.1 KEGG: mlo:mll1362 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; NADH-quinone oxidoreductase chain G ; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; NADH-quinone oxidoreductase subunit G 1978804 9387833 Hden_1936 Hyphomicrobium denitrificans ATCC 51888 NADH-quinone oxidoreductase subunit G YP_003756058.1 1976711 R 582899 CDS YP_003756059.1 300023448 9387834 complement(1978823..1980109) 1 NC_014313.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: bbt:BBta_4556 NADH dehydrogenase I subunit F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; NADH-quinone oxidoreductase subunit F 1980109 9387834 Hden_1937 Hyphomicrobium denitrificans ATCC 51888 NADH-quinone oxidoreductase subunit F YP_003756059.1 1978823 R 582899 CDS YP_003756060.1 300023449 9387835 complement(1980115..1981281) 1 NC_014313.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; KEGG: sil:SPO2780 NADH dehydrogenase subunit E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1981281 9387835 Hden_1938 Hyphomicrobium denitrificans ATCC 51888 NADH-quinone oxidoreductase subunit E YP_003756060.1 1980115 R 582899 CDS YP_003756061.1 300023450 9387836 complement(1981533..1982015) 1 NC_014313.1 KEGG: vap:Vapar_5757 protein of unknown function DUF6 transmembrane; hypothetical protein 1982015 9387836 Hden_1939 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756061.1 1981533 R 582899 CDS YP_003756062.1 300023451 9387837 complement(1982246..1983436) 1 NC_014313.1 TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: nwi:Nwi_1885 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D 1983436 9387837 Hden_1940 Hyphomicrobium denitrificans ATCC 51888 NADH dehydrogenase I subunit D YP_003756062.1 1982246 R 582899 CDS YP_003756063.1 300023452 9387838 complement(1983439..1983888) 1 NC_014313.1 PFAM: thioesterase superfamily protein; KEGG: oca:OCAR_5925 hypothetical protein; thioesterase superfamily protein 1983888 9387838 Hden_1941 Hyphomicrobium denitrificans ATCC 51888 thioesterase superfamily protein YP_003756063.1 1983439 R 582899 CDS YP_003756064.1 300023453 9387839 complement(1983900..1984199) 1 NC_014313.1 KEGG: fal:FRAAL6779 hypothetical protein; hypothetical protein 1984199 9387839 Hden_1942 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756064.1 1983900 R 582899 CDS YP_003756065.1 300023454 9387840 complement(1984256..1984855) 1 NC_014313.1 KEGG: mno:Mnod_4128 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1984855 9387840 Hden_1943 Hyphomicrobium denitrificans ATCC 51888 NADH (or F420H2) dehydrogenase subunit C YP_003756065.1 1984256 R 582899 CDS YP_003756066.1 300023455 9387841 complement(1984871..1985290) 1 NC_014313.1 KEGG: lpf:lpl1942 hypothetical protein; hypothetical protein 1985290 9387841 Hden_1944 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756066.1 1984871 R 582899 CDS YP_003756067.1 300023456 9387842 complement(1985312..1985908) 1 NC_014313.1 TIGRFAM: NADH-quinone oxidoreductase subunit beta; KEGG: azc:AZC_1668 NADH ubiqionone oxidoreductase chain B protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta 1985908 9387842 Hden_1945 Hyphomicrobium denitrificans ATCC 51888 NADH-quinone oxidoreductase subunit beta YP_003756067.1 1985312 R 582899 CDS YP_003756068.1 300023457 9387843 complement(1985899..1986264) 1 NC_014313.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mes:Meso_1022 NADH dehydrogenase subunit A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1986264 9387843 Hden_1946 Hyphomicrobium denitrificans ATCC 51888 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_003756068.1 1985899 R 582899 CDS YP_003756069.1 300023458 9387844 complement(1986720..1986983) 1 NC_014313.1 KEGG: ang:An06g01080 hypothetical protein; hypothetical protein 1986983 9387844 Hden_1947 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756069.1 1986720 R 582899 CDS YP_003756070.1 300023459 9387845 complement(1987316..1987576) 1 NC_014313.1 KEGG: gdj:Gdia_2028 hypothetical protein; hypothetical protein 1987576 9387845 Hden_1948 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756070.1 1987316 R 582899 CDS YP_003756071.1 300023460 9387846 complement(1987750..1988115) 1 NC_014313.1 KEGG: nhl:Nhal_1707 hypothetical protein; hypothetical protein 1988115 9387846 Hden_1949 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756071.1 1987750 R 582899 CDS YP_003756072.1 300023461 9387847 1988414..1990588 1 NC_014313.1 KEGG: xau:Xaut_1894 CHASE2 sensor protein; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase with Chase sensor 1990588 9387847 Hden_1950 Hyphomicrobium denitrificans ATCC 51888 adenylate/guanylate cyclase with Chase sensor YP_003756072.1 1988414 D 582899 CDS YP_003756073.1 300023462 9387848 complement(1990628..1991641) 1 NC_014313.1 PFAM: FecR protein; KEGG: mpo:Mpop_1557 hypothetical protein; FecR protein 1991641 9387848 Hden_1951 Hyphomicrobium denitrificans ATCC 51888 FecR protein YP_003756073.1 1990628 R 582899 CDS YP_003756074.1 300023463 9387849 1992126..1994003 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bbt:BBta_4485 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1994003 9387849 Hden_1952 Hyphomicrobium denitrificans ATCC 51888 diguanylate cyclase/phosphodiesterase YP_003756074.1 1992126 D 582899 CDS YP_003756075.1 300023464 9387851 complement(1994319..1994822) 1 NC_014313.1 PFAM: Domain of unknown function DUF1993; KEGG: pap:PSPA7_0055 hypothetical protein; hypothetical protein 1994822 9387851 Hden_1953 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756075.1 1994319 R 582899 CDS YP_003756076.1 300023465 9387853 1995228..1995626 1 NC_014313.1 KEGG: bbt:BBta_5411 hypothetical protein; hypothetical protein 1995626 9387853 Hden_1954 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756076.1 1995228 D 582899 CDS YP_003756077.1 300023466 9387854 complement(1995725..1995997) 1 NC_014313.1 KEGG: ftm:FTM_0702 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1995997 9387854 Hden_1955 Hyphomicrobium denitrificans ATCC 51888 histone family protein DNA-binding protein YP_003756077.1 1995725 R 582899 CDS YP_003756078.1 300023467 9387855 complement(1996242..1998668) 1 NC_014313.1 SMART: peptidase S16; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: bid:Bind_2182 ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATP-dependent protease La 1998668 9387855 Hden_1956 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent protease La YP_003756078.1 1996242 R 582899 CDS YP_003756079.1 300023468 9387856 complement(1998941..2000188) 1 NC_014313.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; Clp ATPase-like; zinc finger C4 domain protein; KEGG: pla:Plav_3231 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit ClpX 2000188 9387856 Hden_1957 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent Clp protease ATP-binding subunit ClpX YP_003756079.1 1998941 R 582899 CDS YP_003756080.1 300023469 9387857 complement(2000523..2001176) 1 NC_014313.1 KEGG: mes:Meso_1169 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; endopeptidase Clp 2001176 9387857 Hden_1958 Hyphomicrobium denitrificans ATCC 51888 endopeptidase Clp YP_003756080.1 2000523 R 582899 CDS YP_003756081.1 300023470 9387858 complement(2001305..2002669) 1 NC_014313.1 KEGG: pla:Plav_3235 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; trigger factor 2002669 9387858 Hden_1959 Hyphomicrobium denitrificans ATCC 51888 trigger factor YP_003756081.1 2001305 R 582899 CDS YP_003756082.1 300023471 9387860 2003552..2004415 1 NC_014313.1 KEGG: rhodanese; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese 2004415 9387860 Hden_1960 Hyphomicrobium denitrificans ATCC 51888 rhodanese YP_003756082.1 2003552 D 582899 CDS YP_003756083.1 300023472 9387861 complement(2004444..2005037) 1 NC_014313.1 PFAM: glutathione peroxidase; KEGG: azl:AZL_027970 glutathione peroxidase; glutathione peroxidase 2005037 9387861 Hden_1961 Hyphomicrobium denitrificans ATCC 51888 glutathione peroxidase YP_003756083.1 2004444 R 582899 CDS YP_003756084.1 300023473 9387862 2005254..2005517 1 NC_014313.1 KEGG: ptm:GSPATT00026891001 hypothetical protein; hypothetical protein 2005517 9387862 Hden_1962 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756084.1 2005254 D 582899 CDS YP_003756085.1 300023474 9387863 2005702..2006784 1 NC_014313.1 PFAM: secretion protein HlyD; KEGG: bbt:BBta_7064 hypothetical protein; secretion protein HlyD 2006784 9387863 Hden_1963 Hyphomicrobium denitrificans ATCC 51888 secretion protein HlyD YP_003756085.1 2005702 D 582899 CDS YP_003756086.1 300023475 9387864 2007071..2007289 1 NC_014313.1 KEGG: rsq:Rsph17025_0175 hypothetical protein; hypothetical protein 2007289 9387864 Hden_1964 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756086.1 2007071 D 582899 CDS YP_003756087.1 300023476 9387865 2007312..2007734 1 NC_014313.1 KEGG: pen:PSEEN2415 error-prone DNA polymerase; hypothetical protein 2007734 9387865 Hden_1965 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756087.1 2007312 D 582899 CDS YP_003756088.1 300023477 9387866 2007820..2008674 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_1648 esterase; alpha/beta hydrolase fold protein 2008674 9387866 Hden_1966 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003756088.1 2007820 D 582899 CDS YP_003756089.1 300023478 9387867 2008839..2009408 1 NC_014313.1 KEGG: cin:100181106 hypothetical protein LOC100181106; hypothetical protein 2009408 9387867 Hden_1967 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756089.1 2008839 D 582899 CDS YP_003756090.1 300023479 9387868 2009524..2010720 1 NC_014313.1 KEGG: bra:BRADO0993 ABC transporter permease protein; manually curated; PFAM: protein of unknown function DUF214; hypothetical protein 2010720 9387868 Hden_1968 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756090.1 2009524 D 582899 CDS YP_003756091.1 300023480 9387869 2010736..2011476 1 NC_014313.1 KEGG: met:M446_1554 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 2011476 9387869 Hden_1969 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756091.1 2010736 D 582899 CDS YP_003756092.1 300023481 9387870 2011650..2012501 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pla:Plav_0786 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2012501 9387870 Hden_1970 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756092.1 2011650 D 582899 CDS YP_003756093.1 300023482 9387871 2012498..2013112 1 NC_014313.1 PFAM: phosphoglycerate mutase; KEGG: rhi:NGR_c05180 phosphoglycerate mutase; phosphoglycerate mutase 2013112 9387871 Hden_1971 Hyphomicrobium denitrificans ATCC 51888 phosphoglycerate mutase YP_003756093.1 2012498 D 582899 CDS YP_003756094.1 300023483 9387872 2013588..2014676 1 NC_014313.1 TIGRFAM: chorismate synthase; KEGG: rpd:RPD_1314 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 2014676 9387872 Hden_1972 Hyphomicrobium denitrificans ATCC 51888 chorismate synthase YP_003756094.1 2013588 D 582899 CDS YP_003756095.1 300023484 9387873 2014868..2015179 1 NC_014313.1 KEGG: lbz:LbrM17_V2.0710 hypothetical protein; hypothetical protein 2015179 9387873 Hden_1973 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756095.1 2014868 D 582899 CDS YP_003756096.1 300023485 9387874 complement(2015045..2016274) 1 NC_014313.1 PFAM: (uracil-5)-methyltransferase; KEGG: hne:HNE_2781 23S rRNA (uracil-5-)-methyltransferase RumA; (uracil-5)-methyltransferase 2016274 9387874 Hden_1974 Hyphomicrobium denitrificans ATCC 51888 (uracil-5)-methyltransferase YP_003756096.1 2015045 R 582899 CDS YP_003756097.1 300023486 9387875 complement(2016267..2017046) 1 NC_014313.1 SMART: RNA-binding S4 domain protein; manually curated; TIGRFAM: hemolysin A; KEGG: rru:Rru_A2620 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A 2017046 9387875 Hden_1975 Hyphomicrobium denitrificans ATCC 51888 hemolysin A YP_003756097.1 2016267 R 582899 CDS YP_003756098.1 300023487 9387876 2017077..2017499 1 NC_014313.1 KEGG: bra:BRADO0884 signal peptide; hypothetical protein 2017499 9387876 Hden_1976 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756098.1 2017077 D 582899 CDS YP_003756099.1 300023488 9387877 complement(2017566..2019473) 1 NC_014313.1 KEGG: pla:Plav_0781 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase central region; transketolase; deoxyxylulose-5-phosphate synthase 2019473 9387877 Hden_1977 Hyphomicrobium denitrificans ATCC 51888 deoxyxylulose-5-phosphate synthase YP_003756099.1 2017566 R 582899 CDS YP_003756100.1 300023489 9387878 complement(2019667..2019948) 1 NC_014313.1 KEGG: bqu:BQ03530 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 2019948 9387878 Hden_1978 Hyphomicrobium denitrificans ATCC 51888 exodeoxyribonuclease VII small subunit YP_003756100.1 2019667 R 582899 CDS YP_003756101.1 300023490 9387879 complement(2019995..2020939) 1 NC_014313.1 PFAM: histone deacetylase superfamily; KEGG: msl:Msil_1308 histone deacetylase superfamily; histone deacetylase superfamily protein 2020939 9387879 Hden_1979 Hyphomicrobium denitrificans ATCC 51888 histone deacetylase superfamily protein YP_003756101.1 2019995 R 582899 CDS YP_003756102.1 300023491 9387880 complement(2020978..2021859) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oca:OCAR_4340 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2021859 9387880 Hden_1980 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756102.1 2020978 R 582899 CDS YP_003756103.1 300023492 9387881 complement(2021931..2022704) 1 NC_014313.1 PFAM: enoyl-CoA hydratase/isomerase; KEGG: bja:bll7955 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2022704 9387881 Hden_1981 Hyphomicrobium denitrificans ATCC 51888 enoyl-CoA hydratase/isomerase YP_003756103.1 2021931 R 582899 CDS YP_003756104.1 300023493 9387882 complement(2022701..2024470) 1 NC_014313.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: oca:OCAR_6891 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2024470 9387882 Hden_1982 Hyphomicrobium denitrificans ATCC 51888 acyl-CoA dehydrogenase domain-containing protein YP_003756104.1 2022701 R 582899 CDS YP_003756105.1 300023494 9387883 2024564..2025511 1 NC_014313.1 KEGG: mrd:Mrad2831_3830 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; Sua5/YciO/YrdC/YwlC family protein 2025511 9387883 Hden_1983 Hyphomicrobium denitrificans ATCC 51888 Sua5/YciO/YrdC/YwlC family protein YP_003756105.1 2024564 D 582899 CDS YP_003756106.1 300023495 9387884 complement(2025525..2025704) 1 NC_014313.1 KEGG: afv:AFLA_139530 hypothetical protein; hypothetical protein 2025704 9387884 Hden_1984 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756106.1 2025525 R 582899 CDS YP_003756107.1 300023496 9387885 complement(2025822..2026937) 1 NC_014313.1 PFAM: acyltransferase 3; KEGG: mrd:Mrad2831_0502 acyltransferase 3; acyltransferase 3 2026937 9387885 Hden_1985 Hyphomicrobium denitrificans ATCC 51888 acyltransferase 3 YP_003756107.1 2025822 R 582899 CDS YP_003756108.1 300023497 9387886 complement(2027068..2028780) 1 NC_014313.1 PFAM: Clp domain protein; KEGG: hsl:OE3611R transducer protein BasT; Clp domain-containing protein 2028780 9387886 Hden_1986 Hyphomicrobium denitrificans ATCC 51888 Clp domain-containing protein YP_003756108.1 2027068 R 582899 CDS YP_003756109.1 300023498 9387887 complement(2028995..2029675) 1 NC_014313.1 PFAM: protein of unknown function DUF159; KEGG: rhi:NGR_c08610 hypothetical protein; hypothetical protein 2029675 9387887 Hden_1987 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756109.1 2028995 R 582899 CDS YP_003756110.1 300023499 9387888 2029715..2030179 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: rpb:RPB_1127 hypothetical protein; hypothetical protein 2030179 9387888 Hden_1988 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756110.1 2029715 D 582899 CDS YP_003756111.1 300023500 9387889 2030331..2030576 1 NC_014313.1 KEGG: pla:Plav_0756 hypothetical protein; hypothetical protein 2030576 9387889 Hden_1989 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756111.1 2030331 D 582899 CDS YP_003756112.1 300023501 9387890 complement(2030604..2031266) 1 NC_014313.1 PFAM: lysine exporter (LYSE/YGGA); KEGG: pla:Plav_0754 lysine exporter protein LysE/YggA; lysine exporter LysE/YggA 2031266 9387890 Hden_1990 Hyphomicrobium denitrificans ATCC 51888 lysine exporter LysE/YggA YP_003756112.1 2030604 R 582899 CDS YP_003756113.1 300023502 9387891 2031343..2031984 1 NC_014313.1 KEGG: smd:Smed_0707 hypothetical protein; hypothetical protein 2031984 9387891 Hden_1991 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756113.1 2031343 D 582899 CDS YP_003756114.1 300023503 9387892 2032110..2032877 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr7232 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2032877 9387892 Hden_1992 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003756114.1 2032110 D 582899 CDS YP_003756115.1 300023504 9387893 complement(2032901..2034235) 1 NC_014313.1 TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: rpb:RPB_1118 dihydroorotase; PFAM: amidohydrolase; dihydroorotase 2034235 9387893 Hden_1993 Hyphomicrobium denitrificans ATCC 51888 dihydroorotase YP_003756115.1 2032901 R 582899 CDS YP_003756116.1 300023505 9387894 2034320..2035216 1 NC_014313.1 KEGG: mrd:Mrad2831_3987 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; folate-binding protein YgfZ 2035216 9387894 Hden_1994 Hyphomicrobium denitrificans ATCC 51888 folate-binding protein YgfZ YP_003756116.1 2034320 D 582899 CDS YP_003756117.1 300023506 9387895 2035213..2035824 1 NC_014313.1 TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: rpc:RPC_4332 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 2035824 9387895 Hden_1995 Hyphomicrobium denitrificans ATCC 51888 DNA-3-methyladenine glycosylase I YP_003756117.1 2035213 D 582899 CDS YP_003756118.1 300023507 9387896 2035821..2036429 1 NC_014313.1 KEGG: rpd:RPD_1235 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2036429 9387896 Hden_1996 Hyphomicrobium denitrificans ATCC 51888 metal dependent phosphohydrolase YP_003756118.1 2035821 D 582899 CDS YP_003756119.1 300023508 9387897 2036538..2037593 1 NC_014313.1 KEGG: rpb:RPB_1112 hypothetical protein; hypothetical protein 2037593 9387897 Hden_1997 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756119.1 2036538 D 582899 CDS YP_003756120.1 300023509 9387898 2037797..2038858 1 NC_014313.1 TIGRFAM: quinolinate synthetase complex, subunit alpha; KEGG: rpb:RPB_1107 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit alpha 2038858 9387898 Hden_1998 Hyphomicrobium denitrificans ATCC 51888 quinolinate synthetase complex subunit alpha YP_003756120.1 2037797 D 582899 CDS YP_003756121.1 300023510 9387899 2038892..2040544 1 NC_014313.1 KEGG: rpb:RPB_1106 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase 2040544 9387899 Hden_1999 Hyphomicrobium denitrificans ATCC 51888 L-aspartate oxidase YP_003756121.1 2038892 D 582899 CDS YP_003756122.1 300023511 9387900 2040541..2041434 1 NC_014313.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: oan:Oant_0431 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2041434 9387900 Hden_2000 Hyphomicrobium denitrificans ATCC 51888 nicotinate-nucleotide pyrophosphorylase YP_003756122.1 2040541 D 582899 CDS YP_003756123.1 300023512 9387901 2041522..2041749 1 NC_014313.1 KEGG: afv:AFLA_054150 cycloheximide resistance protein; hypothetical protein 2041749 9387901 Hden_2001 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756123.1 2041522 D 582899 CDS YP_003756124.1 300023513 9387902 complement(2041772..2044498) 1 NC_014313.1 TIGRFAM: pyruvate, phosphate dikinase; KEGG: xau:Xaut_0494 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilizing protein; PEP-utilising protein mobile region; pyruvate, phosphate dikinase 2044498 9387902 Hden_2002 Hyphomicrobium denitrificans ATCC 51888 pyruvate, phosphate dikinase YP_003756124.1 2041772 R 582899 CDS YP_003756125.1 300023514 9387903 2044624..2046027 1 NC_014313.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: atc:AGR_C_165 hypothetical protein; peptidase M20 2046027 9387903 Hden_2003 Hyphomicrobium denitrificans ATCC 51888 peptidase M20 YP_003756125.1 2044624 D 582899 CDS YP_003756126.1 300023515 9387904 2046080..2047036 1 NC_014313.1 PFAM: ribonuclease T2; KEGG: xau:Xaut_2731 ribonuclease T2; ribonuclease T2 2047036 9387904 Hden_2004 Hyphomicrobium denitrificans ATCC 51888 ribonuclease T2 YP_003756126.1 2046080 D 582899 CDS YP_003756127.1 300023516 9387905 complement(2047096..2047851) 1 NC_014313.1 KEGG: scb:SCAB_4621 hypothetical protein; hypothetical protein 2047851 9387905 Hden_2005 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756127.1 2047096 R 582899 CDS YP_003756128.1 300023517 9387906 complement(2048001..2048741) 1 NC_014313.1 KEGG: cak:Caul_3758 hypothetical protein; hypothetical protein 2048741 9387906 Hden_2006 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756128.1 2048001 R 582899 CDS YP_003756129.1 300023518 9387907 2049103..2049843 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_1974 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2049843 9387907 Hden_2007 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756129.1 2049103 D 582899 CDS YP_003756130.1 300023519 9387908 2050120..2051418 1 NC_014313.1 manually curated; KEGG: amt:Amet_1486 cell wall hydrolase/autolysin; hypothetical protein 2051418 9387908 Hden_2008 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756130.1 2050120 D 582899 CDS YP_003756131.1 300023520 9387909 2051449..2052225 1 NC_014313.1 KEGG: tde:TDE0488 lipoprotein; hypothetical protein 2052225 9387909 Hden_2009 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756131.1 2051449 D 582899 CDS YP_003756132.1 300023521 9387910 complement(2052395..2053366) 1 NC_014313.1 KEGG: bra:BRADO5334 hypothetical protein; hypothetical protein 2053366 9387910 Hden_2010 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756132.1 2052395 R 582899 CDS YP_003756133.1 300023522 9387911 2053513..2055525 1 NC_014313.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; UvrB/UvrC protein; KEGG: mes:Meso_1975 excinuclease ABC subunit C; SMART: excinuclease ABC C subunit domain protein; DNA-binding protein; excinuclease ABC subunit C 2055525 9387911 Hden_2011 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC subunit C YP_003756133.1 2053513 D 582899 CDS YP_003756134.1 300023523 9387912 2055647..2058319 1 NC_014313.1 PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_1800 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2058319 9387912 Hden_2012 Hyphomicrobium denitrificans ATCC 51888 mechanosensitive ion channel MscS YP_003756134.1 2055647 D 582899 CDS YP_003756135.1 300023524 9387913 2058387..2058974 1 NC_014313.1 KEGG: mno:Mnod_3714 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 2058974 9387913 Hden_2013 Hyphomicrobium denitrificans ATCC 51888 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_003756135.1 2058387 D 582899 CDS YP_003756136.1 300023525 9387914 2058981..2059256 1 NC_014313.1 KEGG: mrd:Mrad2831_5403 molybdopterin converting factor, subunit 1; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 2059256 9387914 Hden_2014 Hyphomicrobium denitrificans ATCC 51888 molybdopterin converting factor subunit 1 YP_003756136.1 2058981 D 582899 CDS YP_003756137.1 300023526 9387915 2059262..2059726 1 NC_014313.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: dar:Daro_2729 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein 2059726 9387915 Hden_2015 Hyphomicrobium denitrificans ATCC 51888 molybdopterin biosynthesis MoaE protein YP_003756137.1 2059262 D 582899 CDS YP_003756138.1 300023527 9387916 2059933..2061204 1 NC_014313.1 KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 2061204 9387916 Hden_2016 Hyphomicrobium denitrificans ATCC 51888 cell wall hydrolase/autolysin YP_003756138.1 2059933 D 582899 CDS YP_003756139.1 300023528 9387917 complement(2061891..2062868) 1 NC_014313.1 PFAM: diacylglycerol kinase; KEGG: pla:Plav_1994 diacylglycerol kinase; diacylglycerol kinase 2062868 9387917 Hden_2017 Hyphomicrobium denitrificans ATCC 51888 diacylglycerol kinase YP_003756139.1 2061891 R 582899 CDS YP_003756140.1 300023529 9387918 complement(2062944..2063834) 1 NC_014313.1 KEGG: xau:Xaut_1986 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase, sigma 32 subunit, RpoH 2063834 9387918 Hden_2018 Hyphomicrobium denitrificans ATCC 51888 RNA polymerase, sigma 32 subunit, RpoH YP_003756140.1 2062944 R 582899 CDS YP_003756141.1 300023530 9387919 complement(2064023..2065057) 1 NC_014313.1 KEGG: oca:OCAR_7148 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; pseudouridine synthase 2065057 9387919 Hden_2019 Hyphomicrobium denitrificans ATCC 51888 pseudouridine synthase YP_003756141.1 2064023 R 582899 CDS YP_003756142.1 300023531 9387920 2065094..2065468 1 NC_014313.1 KEGG: gbe:GbCGDNIH1_0850 hypothetical protein; hypothetical protein 2065468 9387920 Hden_2020 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756142.1 2065094 D 582899 CDS YP_003756143.1 300023532 9387922 complement(2066153..2066557) 1 NC_014313.1 KEGG: sun:SUN_2376 hypothetical protein; hypothetical protein 2066557 9387922 Hden_2021 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756143.1 2066153 R 582899 CDS YP_003756144.1 300023533 9387923 2066961..2067746 1 NC_014313.1 KEGG: pfl:PFL_2850 hypothetical protein; periplasmic protein-like protein 2067746 9387923 Hden_2022 Hyphomicrobium denitrificans ATCC 51888 periplasmic protein-like protein YP_003756144.1 2066961 D 582899 CDS YP_003756145.1 300023534 9387924 complement(2067774..2068601) 1 NC_014313.1 PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 hypothetical protein; hypothetical protein 2068601 9387924 Hden_2023 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756145.1 2067774 R 582899 CDS YP_003756146.1 300023535 9387925 complement(2068751..2069812) 1 NC_014313.1 KEGG: sus:acid_4937 calcium/cation antiporter; TIGRFAM: calcium/proton antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; calcium/proton antiporter, CaCA family 2069812 9387925 Hden_2024 Hyphomicrobium denitrificans ATCC 51888 calcium/proton antiporter, CaCA family YP_003756146.1 2068751 R 582899 CDS YP_003756147.1 300023536 9387926 complement(2069828..2071624) 1 NC_014313.1 manually curated; TIGRFAM: sulfate transporter; KEGG: bja:blr2848 sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter 2071624 9387926 Hden_2025 Hyphomicrobium denitrificans ATCC 51888 sulfate transporter YP_003756147.1 2069828 R 582899 CDS YP_003756148.1 300023537 9387927 2072082..2074331 1 NC_014313.1 KEGG: bid:Bind_2452 hypothetical protein; hypothetical protein 2074331 9387927 Hden_2026 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756148.1 2072082 D 582899 CDS YP_003756149.1 300023538 9387928 2074373..2074801 1 NC_014313.1 KEGG: azl:AZL_b02390 hypothetical protein; hypothetical protein 2074801 9387928 Hden_2027 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756149.1 2074373 D 582899 CDS YP_003756150.1 300023539 9387929 2074823..2075782 1 NC_014313.1 KEGG: rhi:NGR_b13630 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 2075782 9387929 Hden_2028 Hyphomicrobium denitrificans ATCC 51888 phosphate acetyltransferase YP_003756150.1 2074823 D 582899 CDS YP_003756151.1 300023540 9387930 2075786..2076994 1 NC_014313.1 KEGG: bja:blr3458 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 2076994 9387930 Hden_2029 Hyphomicrobium denitrificans ATCC 51888 acetate kinase YP_003756151.1 2075786 D 582899 CDS YP_003756152.1 300023541 9387931 2076991..2077773 1 NC_014313.1 KEGG: bpa:BPP1167 enoyl-(acyl carrier protein) reductase; enoyl-(acyl carrier protein) reductase 2077773 9387931 Hden_2030 Hyphomicrobium denitrificans ATCC 51888 enoyl-(acyl carrier protein) reductase YP_003756152.1 2076991 D 582899 CDS YP_003756153.1 300023542 9387932 2077955..2078374 1 NC_014313.1 PFAM: UspA domain protein; KEGG: rxy:Rxyl_2521 hypothetical protein; UspA domain-containing protein 2078374 9387932 Hden_2031 Hyphomicrobium denitrificans ATCC 51888 UspA domain-containing protein YP_003756153.1 2077955 D 582899 CDS YP_003756154.1 300023543 9387933 complement(2078503..2081652) 1 NC_014313.1 KEGG: bja:bll5080 AcrB/AcrD/AcrF family protein; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2081652 9387933 Hden_2032 Hyphomicrobium denitrificans ATCC 51888 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003756154.1 2078503 R 582899 CDS YP_003756155.1 300023544 9387934 complement(2081657..2082769) 1 NC_014313.1 KEGG: bja:bll5081 multidrug resistance protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2082769 9387934 Hden_2033 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003756155.1 2081657 R 582899 CDS YP_003756156.1 300023545 9387935 2083405..2084469 1 NC_014313.1 PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_0862 hypothetical protein; hypothetical protein 2084469 9387935 Hden_2034 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756156.1 2083405 D 582899 CDS YP_003756157.1 300023546 9387936 2084943..2086340 1 NC_014313.1 KEGG: sco:SCO5294 secreted protein; hypothetical protein 2086340 9387936 Hden_2035 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756157.1 2084943 D 582899 CDS YP_003756158.1 300023547 9387937 2086340..2087083 1 NC_014313.1 KEGG: amt:Amet_0213 hypothetical protein; hypothetical protein 2087083 9387937 Hden_2036 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756158.1 2086340 D 582899 CDS YP_003756159.1 300023548 9387938 complement(2087152..2088201) 1 NC_014313.1 KEGG: xau:Xaut_0924 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 2088201 9387938 Hden_2037 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003756159.1 2087152 R 582899 CDS YP_003756160.1 300023549 9387939 2088392..2089474 1 NC_014313.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: mei:Msip34_2461 hypothetical protein; hypothetical protein 2089474 9387939 Hden_2038 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756160.1 2088392 D 582899 CDS YP_003756161.1 300023550 9387940 2089471..2089767 1 NC_014313.1 KEGG: mei:Msip34_2462 hypothetical protein; hypothetical protein 2089767 9387940 Hden_2039 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756161.1 2089471 D 582899 CDS YP_003756162.1 300023551 9387941 2089764..2089880 1 NC_014313.1 KEGG: mei:Msip34_2463 hypothetical protein; hypothetical protein 2089880 9387941 Hden_2040 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756162.1 2089764 D 582899 CDS YP_003756163.1 300023552 9387942 2090004..2090378 1 NC_014313.1 PFAM: PRC-barrel domain protein; KEGG: mrd:Mrad2831_4630 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein 2090378 9387942 Hden_2041 Hyphomicrobium denitrificans ATCC 51888 PRC-barrel domain-containing protein YP_003756163.1 2090004 D 582899 CDS YP_003756164.1 300023553 9387943 complement(2090474..2091166) 1 NC_014313.1 KEGG: mmr:Mmar10_1158 hypothetical protein; hypothetical protein 2091166 9387943 Hden_2042 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756164.1 2090474 R 582899 CDS YP_003756165.1 300023554 9387944 complement(2091159..2091344) 1 NC_014313.1 KEGG: rpd:RPD_0737 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cytochrome oxidase maturation protein, cbb3-type 2091344 9387944 Hden_2043 Hyphomicrobium denitrificans ATCC 51888 cytochrome oxidase maturation protein, cbb3-type YP_003756165.1 2091159 R 582899 CDS YP_003756166.1 300023555 9387945 complement(2091341..2093536) 1 NC_014313.1 KEGG: pla:Plav_1526 heavy metal translocating P-type ATPase; TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; ATPase P 2093536 9387945 Hden_2044 Hyphomicrobium denitrificans ATCC 51888 ATPase P YP_003756166.1 2091341 R 582899 CDS YP_003756167.1 300023556 9387946 complement(2093521..2094012) 1 NC_014313.1 PFAM: FixH family protein; KEGG: FixH family protein; FixH family protein 2094012 9387946 Hden_2045 Hyphomicrobium denitrificans ATCC 51888 FixH family protein YP_003756167.1 2093521 R 582899 CDS YP_003756168.1 300023557 9387947 complement(2094009..2095493) 1 NC_014313.1 KEGG: pla:Plav_1528 cytochrome C oxidase cbb3 type accessory protein FixG; TIGRFAM: cytochrome C oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; cytochrome C oxidase accessory protein CcoG 2095493 9387947 Hden_2046 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase accessory protein CcoG YP_003756168.1 2094009 R 582899 CDS YP_003756169.1 300023558 9387948 complement(2095490..2096410) 1 NC_014313.1 KEGG: rpb:RPB_0014 cytochrome C oxidase cbb3-type, subunit III; TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; PFAM: cytochrome C class I; cytochrome C oxidase cbb3-type subunit III 2096410 9387948 Hden_2047 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase cbb3-type subunit III YP_003756169.1 2095490 R 582899 CDS YP_003756170.1 300023559 9387949 complement(2096407..2096583) 1 NC_014313.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: hne:HNE_1230 cytochrome C oxidase cbb3-type, CcoQ subunit; Cbb3-type cytochrome oxidase component 2096583 9387949 Hden_2048 Hyphomicrobium denitrificans ATCC 51888 Cbb3-type cytochrome oxidase component YP_003756170.1 2096407 R 582899 CDS YP_003756171.1 300023560 9387950 complement(2096597..2097334) 1 NC_014313.1 KEGG: rpb:RPB_0016 cytochrome C oxidase cbb3-type, subunit II; TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome C oxidase cbb3-type subunit II 2097334 9387950 Hden_2049 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase cbb3-type subunit II YP_003756171.1 2096597 R 582899 CDS YP_003756172.1 300023561 9387951 complement(2097347..2099011) 1 NC_014313.1 TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; KEGG: pla:Plav_1532 cytochrome C oxidase cbb3-type, subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase cbb3-type subunit I 2099011 9387951 Hden_2050 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase cbb3-type subunit I YP_003756172.1 2097347 R 582899 CDS YP_003756173.1 300023562 9387952 complement(2099258..2100031) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0050 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 2100031 9387952 Hden_2051 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756173.1 2099258 R 582899 CDS YP_003756174.1 300023563 9387953 complement(2100031..2101218) 1 NC_014313.1 KEGG: azc:AZC_2421 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 2101218 9387953 Hden_2052 Hyphomicrobium denitrificans ATCC 51888 acetate kinase YP_003756174.1 2100031 R 582899 CDS YP_003756175.1 300023564 9387954 complement(2101215..2102621) 1 NC_014313.1 KEGG: azc:AZC_2420 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: MaoC domain protein dehydratase; phosphate acetyl/butaryl transferase; phosphate acetyltransferase 2102621 9387954 Hden_2053 Hyphomicrobium denitrificans ATCC 51888 phosphate acetyltransferase YP_003756175.1 2101215 R 582899 CDS YP_003756176.1 300023565 9387955 complement(2102618..2104390) 1 NC_014313.1 PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: bxe:Bxe_C0053 poly-beta-hydroxybutyrate polymerase; poly-beta-hydroxybutyrate polymerase domain-containing protein 2104390 9387955 Hden_2054 Hyphomicrobium denitrificans ATCC 51888 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_003756176.1 2102618 R 582899 CDS YP_003756177.1 300023566 9387956 complement(2104755..2107115) 1 NC_014313.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: nwi:Nwi_2890 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Cobalamin-independent synthase MetE domain protein; methionine synthase vitamin-B12 independent; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2107115 9387956 Hden_2055 Hyphomicrobium denitrificans ATCC 51888 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_003756177.1 2104755 R 582899 CDS YP_003756178.1 300023567 9387957 complement(2107148..2107534) 1 NC_014313.1 PFAM: thioesterase superfamily protein; KEGG: rpt:Rpal_2645 thioesterase superfamily protein; thioesterase superfamily protein 2107534 9387957 Hden_2056 Hyphomicrobium denitrificans ATCC 51888 thioesterase superfamily protein YP_003756178.1 2107148 R 582899 CDS YP_003756179.1 300023568 9387958 complement(2107538..2107759) 1 NC_014313.1 KEGG: bid:Bind_0045 hypothetical protein; hypothetical protein 2107759 9387958 Hden_2057 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756179.1 2107538 R 582899 CDS YP_003756180.1 300023569 9387959 complement(2107807..2109111) 1 NC_014313.1 KEGG: bcs:BCAN_A1651 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 2109111 9387959 Hden_2058 Hyphomicrobium denitrificans ATCC 51888 isocitrate lyase YP_003756180.1 2107807 R 582899 CDS YP_003756181.1 300023570 9387960 2109244..2110662 1 NC_014313.1 KEGG: rru:Rru_A2316 XRE family transcriptional regulator; PFAM: protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; hypothetical protein; SMART: hypothetical protein; XRE family transcriptional regulator 2110662 9387960 Hden_2059 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003756181.1 2109244 D 582899 CDS YP_003756182.1 300023571 9387961 2110680..2110796 1 NC_014313.1 hypothetical protein 2110796 9387961 Hden_2060 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756182.1 2110680 D 582899 CDS YP_003756183.1 300023572 9387962 complement(2110871..2111464) 1 NC_014313.1 PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein; hypothetical protein 2111464 9387962 Hden_2061 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756183.1 2110871 R 582899 CDS YP_003756184.1 300023573 9387963 complement(2111461..2111592) 1 NC_014313.1 hypothetical protein 2111592 9387963 Hden_2062 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756184.1 2111461 R 582899 CDS YP_003756185.1 300023574 9387964 complement(2111768..2111998) 1 NC_014313.1 KEGG: ecb:100054150 hypothetical protein LOC100054150; hypothetical protein 2111998 9387964 Hden_2063 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756185.1 2111768 R 582899 CDS YP_003756186.1 300023575 9387965 2112030..2112167 1 NC_014313.1 KEGG: mea:Mex_1p1601 hypothetical protein; hypothetical protein 2112167 9387965 Hden_2064 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756186.1 2112030 D 582899 CDS YP_003756187.1 300023576 9387967 2113398..2113514 1 NC_014313.1 hypothetical protein 2113514 9387967 Hden_2066 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756187.1 2113398 D 582899 CDS YP_003756188.1 300023577 9387968 2113540..2114241 1 NC_014313.1 KEGG: rsq:Rsph17025_4400 hypothetical protein; hypothetical protein 2114241 9387968 Hden_2067 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756188.1 2113540 D 582899 CDS YP_003756189.1 300023578 9387969 complement(2114864..2115889) 1 NC_014313.1 PFAM: patatin; KEGG: bja:bll7964 hypothetical protein; patatin 2115889 9387969 Hden_2068 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003756189.1 2114864 R 582899 CDS YP_003756190.1 300023579 9387970 2116319..2117773 1 NC_014313.1 PFAM: citrate transporter; KEGG: msl:Msil_2569 citrate transporter; citrate transporter 2117773 9387970 Hden_2069 Hyphomicrobium denitrificans ATCC 51888 citrate transporter YP_003756190.1 2116319 D 582899 CDS YP_003756191.1 300023580 9387971 2117874..2118365 1 NC_014313.1 manually curated; KEGG: msl:Msil_1032 hypothetical protein; hypothetical protein 2118365 9387971 Hden_2070 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756191.1 2117874 D 582899 CDS YP_003756192.1 300023581 9387974 complement(2120360..2121940) 1 NC_014313.1 KEGG: xau:Xaut_1329 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 2121940 9387974 Hden_2072 Hyphomicrobium denitrificans ATCC 51888 2-isopropylmalate synthase YP_003756192.1 2120360 R 582899 CDS YP_003756193.1 300023582 9387975 2122384..2122944 1 NC_014313.1 PFAM: cytochrome B561; KEGG: pfs:PFLU3913 cytochrome b561; cytochrome B561 2122944 9387975 Hden_2073 Hyphomicrobium denitrificans ATCC 51888 cytochrome B561 YP_003756193.1 2122384 D 582899 CDS YP_003756194.1 300023583 9387976 complement(2122959..2123873) 1 NC_014313.1 KEGG: smd:Smed_1932 PhzF family phenazine biosynthesis protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein PhzF family 2123873 9387976 Hden_2074 Hyphomicrobium denitrificans ATCC 51888 phenazine biosynthesis protein PhzF family YP_003756194.1 2122959 R 582899 CDS YP_003756195.1 300023584 9387977 complement(2123986..2124729) 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: mno:Mnod_0955 NUDIX hydrolase; NUDIX hydrolase 2124729 9387977 Hden_2075 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003756195.1 2123986 R 582899 CDS YP_003756196.1 300023585 9387978 complement(2125449..2126468) 1 NC_014313.1 TIGRFAM: ketol-acid reductoisomerase; KEGG: msl:Msil_3011 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase 2126468 9387978 Hden_2076 Hyphomicrobium denitrificans ATCC 51888 ketol-acid reductoisomerase YP_003756196.1 2125449 R 582899 CDS YP_003756197.1 300023586 9387979 complement(2126711..2127259) 1 NC_014313.1 KEGG: mes:Meso_1489 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase, small subunit 2127259 9387979 Hden_2077 Hyphomicrobium denitrificans ATCC 51888 acetolactate synthase, small subunit YP_003756197.1 2126711 R 582899 CDS YP_003756198.1 300023587 9387980 complement(2127277..2127951) 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_4787 glutathione S-transferase (GST); glutathione S-transferase 2127951 9387980 Hden_2078 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003756198.1 2127277 R 582899 CDS YP_003756199.1 300023588 9387981 complement(2127954..2128487) 1 NC_014313.1 KEGG: bmr:BMI_I1357 iron compound ABC transporter periplasmic iron compound-binding protein; hypothetical protein 2128487 9387981 Hden_2079 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756199.1 2127954 R 582899 CDS YP_003756200.1 300023589 9387982 complement(2128484..2130250) 1 NC_014313.1 KEGG: xau:Xaut_1488 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; acetolactate synthase, large subunit, biosynthetic type 2130250 9387982 Hden_2080 Hyphomicrobium denitrificans ATCC 51888 acetolactate synthase, large subunit, biosynthetic type YP_003756200.1 2128484 R 582899 CDS YP_003756201.1 300023590 9387983 complement(2130346..2131278) 1 NC_014313.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: pla:Plav_2463 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 2131278 9387983 Hden_2081 Hyphomicrobium denitrificans ATCC 51888 tRNA delta(2)-isopentenylpyrophosphate transferase YP_003756201.1 2130346 R 582899 CDS YP_003756202.1 300023591 9387984 complement(2131358..2132626) 1 NC_014313.1 PFAM: carbohydrate-selective porin OprB; KEGG: mea:Mex_2p0466 hypothetical protein; carbohydrate-selective porin OprB 2132626 9387984 Hden_2082 Hyphomicrobium denitrificans ATCC 51888 carbohydrate-selective porin OprB YP_003756202.1 2131358 R 582899 CDS YP_003756203.1 300023592 9387985 complement(2132916..2133521) 1 NC_014313.1 KEGG: rfr:Rfer_0625 hypothetical protein; hypothetical protein 2133521 9387985 Hden_2083 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756203.1 2132916 R 582899 CDS YP_003756204.1 300023593 9387986 2133822..2134274 1 NC_014313.1 KEGG: mes:Meso_4276 pseudoazurin; TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; pseudoazurin 2134274 9387986 Hden_2084 Hyphomicrobium denitrificans ATCC 51888 pseudoazurin YP_003756204.1 2133822 D 582899 CDS YP_003756205.1 300023594 9387987 complement(2134388..2136331) 1 NC_014313.1 KEGG: mea:Mex_1p5196 ABC transporter fused ATPase and permease domains; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; ABC transporter 2136331 9387987 Hden_2085 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756205.1 2134388 R 582899 CDS YP_003756206.1 300023595 9387988 complement(2136367..2138091) 1 NC_014313.1 KEGG: ddi:DDBDRAFT_0216653 hypothetical protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein 2138091 9387988 Hden_2086 Hyphomicrobium denitrificans ATCC 51888 peptidoglycan-binding lysin domain-containing protein YP_003756206.1 2136367 R 582899 CDS YP_003756207.1 300023596 9387989 2138315..2138968 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: mno:Mnod_1637 hypothetical protein; hypothetical protein 2138968 9387989 Hden_2087 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756207.1 2138315 D 582899 CDS YP_003756208.1 300023597 9387990 2139109..2140083 1 NC_014313.1 TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; KEGG: xau:Xaut_5042 LAO/AO transporter ATPase; SMART: ATPase AAA; LAO/AO transporter ATPase 2140083 9387990 Hden_2088 Hyphomicrobium denitrificans ATCC 51888 LAO/AO transporter ATPase YP_003756208.1 2139109 D 582899 CDS YP_003756209.1 300023598 9387991 complement(2140128..2141609) 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: cja:CJA_1051 amino acid permease; amino acid permease-associated protein 2141609 9387991 Hden_2089 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003756209.1 2140128 R 582899 CDS YP_003756210.1 300023599 9387992 2141741..2142205 1 NC_014313.1 PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: jan:Jann_3396 zinc finger, CDGSH-type; CDGSH-type iron sulfur domain-containing protein 2142205 9387992 Hden_2090 Hyphomicrobium denitrificans ATCC 51888 CDGSH-type iron sulfur domain-containing protein YP_003756210.1 2141741 D 582899 CDS YP_003756211.1 300023600 9387993 complement(2142382..2142585) 1 NC_014313.1 hypothetical protein 2142585 9387993 Hden_2091 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756211.1 2142382 R 582899 CDS YP_003756212.1 300023601 9387994 2142996..2144303 1 NC_014313.1 KEGG: rlt:Rleg2_1921 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; adenylosuccinate lyase-like; adenylosuccinate lyase 2144303 9387994 Hden_2092 Hyphomicrobium denitrificans ATCC 51888 adenylosuccinate lyase YP_003756212.1 2142996 D 582899 CDS YP_003756213.1 300023602 9387995 2144469..2145239 1 NC_014313.1 KEGG: azo:azo2163 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 2145239 9387995 Hden_2093 Hyphomicrobium denitrificans ATCC 51888 PA-phosphatase-like phosphoesterase YP_003756213.1 2144469 D 582899 CDS YP_003756214.1 300023603 9387996 2145336..2146481 1 NC_014313.1 KEGG: bbt:BBta_5297 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein; dolichyl-phosphate beta-D-mannosyltransferase 2146481 9387996 Hden_2094 Hyphomicrobium denitrificans ATCC 51888 dolichyl-phosphate beta-D-mannosyltransferase YP_003756214.1 2145336 D 582899 CDS YP_003756215.1 300023604 9387997 2146481..2147989 1 NC_014313.1 KEGG: rpt:Rpal_4304 hypothetical protein; hypothetical protein 2147989 9387997 Hden_2095 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756215.1 2146481 D 582899 CDS YP_003756216.1 300023605 9387998 complement(2147999..2148487) 1 NC_014313.1 PFAM: protein of unknown function DUF892; KEGG: oca:OCAR_5362 hypothetical protein; hypothetical protein 2148487 9387998 Hden_2096 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756216.1 2147999 R 582899 CDS YP_003756217.1 300023606 9387999 2148621..2149205 1 NC_014313.1 PFAM: protein of unknown function DUF1234; KEGG: xau:Xaut_2551 hypothetical protein; hypothetical protein 2149205 9387999 Hden_2097 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756217.1 2148621 D 582899 CDS YP_003756218.1 300023607 9388000 complement(2149493..2149816) 1 NC_014313.1 PFAM: protein of unknown function DUF1476; KEGG: azc:AZC_2227 hypothetical protein; hypothetical protein 2149816 9388000 Hden_2098 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756218.1 2149493 R 582899 CDS YP_003756219.1 300023608 9388001 2150202..2150993 1 NC_014313.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: bbt:BBta_5409 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2150993 9388001 Hden_2099 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_003756219.1 2150202 D 582899 CDS YP_003756220.1 300023609 9388002 2151061..2151303 1 NC_014313.1 KEGG: pla:Plav_2588 phosphoribosylformylglycinamidine synthase, PurS; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase, purS 2151303 9388002 Hden_2100 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylformylglycinamidine synthase, purS YP_003756220.1 2151061 D 582899 CDS YP_003756221.1 300023610 9388003 2151303..2151767 1 NC_014313.1 KEGG: lsp:Bsph_1309 hypothetical protein; hypothetical protein 2151767 9388003 Hden_2101 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756221.1 2151303 D 582899 CDS YP_003756222.1 300023611 9388004 2152490..2153194 1 NC_014313.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: sal:Sala_0591 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I 2153194 9388004 Hden_2102 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylformylglycinamidine synthase I YP_003756222.1 2152490 D 582899 CDS YP_003756223.1 300023612 9388005 2153766..2154026 1 NC_014313.1 KEGG: hne:HNE_1530 hypothetical protein; hypothetical protein 2154026 9388005 Hden_2103 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756223.1 2153766 D 582899 CDS YP_003756224.1 300023613 9388006 complement(2154095..2154472) 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlg:Rleg_2347 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2154472 9388006 Hden_2104 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003756224.1 2154095 R 582899 CDS YP_003756225.1 300023614 9388007 complement(2155042..2155431) 1 NC_014313.1 KEGG: seu:SEQ_0613 glucokinase; hypothetical protein 2155431 9388007 Hden_2105 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756225.1 2155042 R 582899 CDS YP_003756226.1 300023615 9388008 2156053..2158290 1 NC_014313.1 TIGRFAM: phosphoribosylformylglycinamidine synthase II; KEGG: bra:BRADO2785 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase II 2158290 9388008 Hden_2106 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylformylglycinamidine synthase II YP_003756226.1 2156053 D 582899 CDS YP_003756227.1 300023616 9388009 2158333..2158785 1 NC_014313.1 KEGG: rpb:RPB_2929 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase 2158785 9388009 Hden_2107 Hyphomicrobium denitrificans ATCC 51888 peptidylprolyl isomerase YP_003756227.1 2158333 D 582899 CDS YP_003756228.1 300023617 9388010 complement(2158900..2159196) 1 NC_014313.1 KEGG: cel:M199.5 COLlagen; hypothetical protein 2159196 9388010 Hden_2108 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756228.1 2158900 R 582899 CDS YP_003756229.1 300023618 9388011 2159480..2160310 1 NC_014313.1 PFAM: protein of unknown function DUF2147; KEGG: xau:Xaut_1034 hypothetical protein; hypothetical protein 2160310 9388011 Hden_2109 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756229.1 2159480 D 582899 CDS YP_003756230.1 300023619 9388012 complement(2160432..2160533) 1 NC_014313.1 KEGG: mex:Mext_1820 coenzyme PQQ biosynthesis protein A; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A 2160533 9388012 Hden_2110 Hyphomicrobium denitrificans ATCC 51888 coenzyme PQQ biosynthesis protein A YP_003756230.1 2160432 R 582899 CDS YP_003756231.1 300023620 9388013 2160717..2160953 1 NC_014313.1 PFAM: BolA family protein; KEGG: met:M446_0006 BolA family protein; BolA family protein 2160953 9388013 Hden_2111 Hyphomicrobium denitrificans ATCC 51888 BolA family protein YP_003756231.1 2160717 D 582899 CDS YP_003756232.1 300023621 9388014 2161031..2161375 1 NC_014313.1 KEGG: sjp:SJA_C1-28240 monothiol glutaredoxin; TIGRFAM: glutaredoxin; PFAM: glutaredoxin; glutaredoxin 2161375 9388014 Hden_2112 Hyphomicrobium denitrificans ATCC 51888 glutaredoxin YP_003756232.1 2161031 D 582899 CDS YP_003756233.1 300023622 9388015 complement(2161454..2164609) 1 NC_014313.1 KEGG: bja:blr6726 AcrB/AcrD/AcrF family protein; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2164609 9388015 Hden_2113 Hyphomicrobium denitrificans ATCC 51888 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003756233.1 2161454 R 582899 CDS YP_003756234.1 300023623 9388016 complement(2164606..2165832) 1 NC_014313.1 KEGG: bja:blr6725 multidrug resistance protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2165832 9388016 Hden_2114 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003756234.1 2164606 R 582899 CDS YP_003756235.1 300023624 9388017 complement(2166053..2166403) 1 NC_014313.1 KEGG: oaa:100079982 similar to betacellulin; BTC; hypothetical protein 2166403 9388017 Hden_2115 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756235.1 2166053 R 582899 CDS YP_003756236.1 300023625 9388018 2166625..2167710 1 NC_014313.1 PFAM: paraquat-inducible protein A; KEGG: ypb:YPTS_2454 PqiA family integral membrane protein; paraquat-inducible protein A 2167710 9388018 Hden_2116 Hyphomicrobium denitrificans ATCC 51888 paraquat-inducible protein A YP_003756236.1 2166625 D 582899 CDS YP_003756237.1 300023626 9388019 complement(2167785..2169500) 1 NC_014313.1 PFAM: general substrate transporter; KEGG: xau:Xaut_3353 major facilitator transporter; general substrate transporter 2169500 9388019 Hden_2117 Hyphomicrobium denitrificans ATCC 51888 general substrate transporter YP_003756237.1 2167785 R 582899 CDS YP_003756238.1 300023627 9388020 complement(2169758..2170375) 1 NC_014313.1 TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; KEGG: bmc:BAbS19_I07930 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 2170375 9388020 Hden_2118 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S4 YP_003756238.1 2169758 R 582899 CDS YP_003756239.1 300023628 9388021 complement(2170587..2171234) 1 NC_014313.1 KEGG: edi:EDI_115560 chromosome-associated kinesin KIF4A; hypothetical protein 2171234 9388021 Hden_2119 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756239.1 2170587 R 582899 CDS YP_003756240.1 300023629 9388022 complement(2171370..2172662) 1 NC_014313.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: avi:Avi_1915 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU 2172662 9388022 Hden_2120 Hyphomicrobium denitrificans ATCC 51888 tRNA/rRNA methyltransferase SpoU YP_003756240.1 2171370 R 582899 CDS YP_003756241.1 300023630 9388023 2172922..2174142 1 NC_014313.1 KEGG: rlt:Rleg2_1953 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; NADP-dependent isocitrate dehydrogenase 2174142 9388023 Hden_2121 Hyphomicrobium denitrificans ATCC 51888 NADP-dependent isocitrate dehydrogenase YP_003756241.1 2172922 D 582899 CDS YP_003756242.1 300023631 9388024 2174177..2174785 1 NC_014313.1 PFAM: methyltransferase type 12; KEGG: gau:GAU_0808 hypothetical protein; type 12 methyltransferase 2174785 9388024 Hden_2122 Hyphomicrobium denitrificans ATCC 51888 type 12 methyltransferase YP_003756242.1 2174177 D 582899 CDS YP_003756243.1 300023632 9388025 complement(2174945..2175430) 1 NC_014313.1 KEGG: sde:Sde_1827 heat shock protein DnaJ-like; hypothetical protein 2175430 9388025 Hden_2123 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756243.1 2174945 R 582899 CDS YP_003756244.1 300023633 9388026 complement(2175666..2178359) 1 NC_014313.1 TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; phosphoesterase DHHA1; threonyl/alanyl tRNA synthetase SAD; KEGG: bmr:BMI_I1212 alanyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 2178359 9388026 Hden_2124 Hyphomicrobium denitrificans ATCC 51888 alanyl-tRNA synthetase YP_003756244.1 2175666 R 582899 CDS YP_003756245.1 300023634 9388027 complement(2178814..2179947) 1 NC_014313.1 TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: hba:Hbal_0258 RecA protein; SMART: ATPase AAA; recA protein 2179947 9388027 Hden_2125 Hyphomicrobium denitrificans ATCC 51888 recA protein YP_003756245.1 2178814 R 582899 CDS YP_003756246.1 300023635 9388028 2180153..2180710 1 NC_014313.1 KEGG: mfa:Mfla_2364 formaldehyde-activating enzyme; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme 2180710 9388028 Hden_2126 Hyphomicrobium denitrificans ATCC 51888 formaldehyde-activating enzyme YP_003756246.1 2180153 D 582899 CDS YP_003756247.1 300023636 9388029 complement(2181426..2184032) 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: rpt:Rpal_4405 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase 2184032 9388029 Hden_2127 Hyphomicrobium denitrificans ATCC 51888 multi-sensor hybrid histidine kinase YP_003756247.1 2181426 R 582899 CDS YP_003756248.1 300023637 9388030 2184203..2184592 1 NC_014313.1 KEGG: ret:RHE_CH02327 hypothetical protein; hypothetical protein 2184592 9388030 Hden_2128 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756248.1 2184203 D 582899 CDS YP_003756249.1 300023638 9388031 complement(2184704..2184973) 1 NC_014313.1 KEGG: mrd:Mrad2831_4663 multi-sensor signal transduction histidine kinase; hypothetical protein 2184973 9388031 Hden_2129 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756249.1 2184704 R 582899 CDS YP_003756250.1 300023639 9388032 complement(2185252..2185974) 1 NC_014313.1 KEGG: pla:Plav_2558 TraR/DksA family transcriptional regulator; TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; TraR/DksA family transcriptional regulator 2185974 9388032 Hden_2130 Hyphomicrobium denitrificans ATCC 51888 TraR/DksA family transcriptional regulator YP_003756250.1 2185252 R 582899 CDS YP_003756251.1 300023640 9388033 2186295..2187140 1 NC_014313.1 KEGG: rpe:RPE_2031 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATPase AAA 2187140 9388033 Hden_2131 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003756251.1 2186295 D 582899 CDS YP_003756252.1 300023641 9388034 2187339..2187653 1 NC_014313.1 KEGG: gob:Gobs_0429 hypothetical protein; hypothetical protein 2187653 9388034 Hden_2132 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756252.1 2187339 D 582899 CDS YP_003756253.1 300023642 9388035 2187942..2189981 1 NC_014313.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: scl:sce2064 asparagine synthetase; PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 2189981 9388035 Hden_2133 Hyphomicrobium denitrificans ATCC 51888 asparagine synthase YP_003756253.1 2187942 D 582899 CDS YP_003756254.1 300023643 9388036 complement(2190003..2190674) 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: oan:Oant_4225 TetR family transcriptional regulator; TetR family transcriptional regulator 2190674 9388036 Hden_2134 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003756254.1 2190003 R 582899 CDS YP_003756255.1 300023644 9388037 2190838..2192142 1 NC_014313.1 PFAM: secretion protein HlyD; KEGG: rhi:NGR_c29530 multidrug resistance protein; secretion protein HlyD 2192142 9388037 Hden_2135 Hyphomicrobium denitrificans ATCC 51888 secretion protein HlyD YP_003756255.1 2190838 D 582899 CDS YP_003756256.1 300023645 9388038 2192176..2193777 1 NC_014313.1 KEGG: mlo:mlr4819 multidrug resistance protein B (drug efflux transporter); TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 2193777 9388038 Hden_2136 Hyphomicrobium denitrificans ATCC 51888 EmrB/QacA subfamily drug resistance transporter YP_003756256.1 2192176 D 582899 CDS YP_003756257.1 300023646 9388039 complement(2193844..2196135) 1 NC_014313.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_3051 TonB-dependent receptor; TonB-dependent receptor 2196135 9388039 Hden_2137 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent receptor YP_003756257.1 2193844 R 582899 CDS YP_003756258.1 300023647 9388040 2196452..2196931 1 NC_014313.1 KEGG: avi:Avi_3464 Acr family transporter; hypothetical protein 2196931 9388040 Hden_2138 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756258.1 2196452 D 582899 CDS YP_003756259.1 300023648 9388041 2196995..2197360 1 NC_014313.1 KEGG: cyn:Cyan7425_1215 hypothetical protein; hypothetical protein 2197360 9388041 Hden_2139 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756259.1 2196995 D 582899 CDS YP_003756260.1 300023649 9388042 2197738..2198403 1 NC_014313.1 PFAM: protein of unknown function DUF2076; KEGG: rle:RL3516 hypothetical protein; periplasmic ligand-binding sensor protein 2198403 9388042 Hden_2140 Hyphomicrobium denitrificans ATCC 51888 periplasmic ligand-binding sensor protein YP_003756260.1 2197738 D 582899 CDS YP_003756261.1 300023650 9388043 2198566..2198721 1 NC_014313.1 KEGG: isc:IscW_ISCW020284 classical arabinogalactan protein; arabinogalactan protein 2198721 9388043 Hden_2141 Hyphomicrobium denitrificans ATCC 51888 arabinogalactan protein YP_003756261.1 2198566 D 582899 CDS YP_003756262.1 300023651 9388044 2198871..2199662 1 NC_014313.1 PFAM: protein of unknown function DUF1236; KEGG: mrd:Mrad2831_2945 hypothetical protein; hypothetical protein 2199662 9388044 Hden_2142 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756262.1 2198871 D 582899 CDS YP_003756263.1 300023652 9388045 2200052..2200288 1 NC_014313.1 KEGG: tcr:504433.20 hypothetical protein; hypothetical protein 2200288 9388045 Hden_2143 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756263.1 2200052 D 582899 CDS YP_003756264.1 300023653 9388046 2200441..2201040 1 NC_014313.1 PFAM: glutathione S-transferase domain; KEGG: glutathione S-transferase; glutathione S-transferase 2201040 9388046 Hden_2144 Hyphomicrobium denitrificans ATCC 51888 glutathione S-transferase YP_003756264.1 2200441 D 582899 CDS YP_003756265.1 300023654 9388047 2201755..2202183 1 NC_014313.1 KEGG: pdi:BDI_3126 hypothetical protein; hypothetical protein 2202183 9388047 Hden_2145 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756265.1 2201755 D 582899 CDS YP_003756266.1 300023655 9388048 complement(2202209..2202784) 1 NC_014313.1 KEGG: bja:bll6012 hypothetical protein; hypothetical protein 2202784 9388048 Hden_2146 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756266.1 2202209 R 582899 CDS YP_003756267.1 300023656 9388049 complement(2202786..2203364) 1 NC_014313.1 PFAM: general secretion pathway protein M; KEGG: alv:Alvin_3008 general secretion pathway protein M; general secretion pathway protein M 2203364 9388049 Hden_2147 Hyphomicrobium denitrificans ATCC 51888 general secretion pathway protein M YP_003756267.1 2202786 R 582899 CDS YP_003756268.1 300023657 9388050 complement(2203364..2204458) 1 NC_014313.1 PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0758 general secretion pathway protein L; fimbrial assembly family protein 2204458 9388050 Hden_2148 Hyphomicrobium denitrificans ATCC 51888 fimbrial assembly family protein YP_003756268.1 2203364 R 582899 CDS YP_003756269.1 300023658 9388051 complement(2204458..2205375) 1 NC_014313.1 KEGG: nhl:Nhal_3652 general secretion pathway protein K; hypothetical protein 2205375 9388051 Hden_2149 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756269.1 2204458 R 582899 CDS YP_003756270.1 300023659 9388052 complement(2205380..2206114) 1 NC_014313.1 KEGG: msl:Msil_0915 general secretion pathway protein J; hypothetical protein 2206114 9388052 Hden_2150 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756270.1 2205380 R 582899 CDS YP_003756271.1 300023660 9388053 complement(2206107..2206556) 1 NC_014313.1 KEGG: eba:ebB44 general secretion pathway protein I; hypothetical protein 2206556 9388053 Hden_2151 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756271.1 2206107 R 582899 CDS YP_003756272.1 300023661 9388054 complement(2206501..2206977) 1 NC_014313.1 TIGRFAM: general secretion pathway protein H; KEGG: bbt:BBta_1281 general secretion pathway protein H, GspH; general secretion pathway protein H 2206977 9388054 Hden_2152 Hyphomicrobium denitrificans ATCC 51888 general secretion pathway protein H YP_003756272.1 2206501 R 582899 CDS YP_003756273.1 300023662 9388055 complement(2206958..2207425) 1 NC_014313.1 KEGG: nhl:Nhal_0441 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 2207425 9388055 Hden_2153 Hyphomicrobium denitrificans ATCC 51888 general secretion pathway protein G YP_003756273.1 2206958 R 582899 CDS YP_003756274.1 300023663 9388056 complement(2207439..2208650) 1 NC_014313.1 PFAM: type II secretion system F domain; KEGG: nhl:Nhal_0440 type II secretion system protein; type II secretion system F domain-containing protein 2208650 9388056 Hden_2154 Hyphomicrobium denitrificans ATCC 51888 type II secretion system F domain-containing protein YP_003756274.1 2207439 R 582899 CDS YP_003756275.1 300023664 9388057 complement(2208753..2210417) 1 NC_014313.1 KEGG: bja:bll6021 general secretion pathway protein E; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: ATPase AAA; type II secretion system protein E 2210417 9388057 Hden_2155 Hyphomicrobium denitrificans ATCC 51888 type II secretion system protein E YP_003756275.1 2208753 R 582899 CDS YP_003756276.1 300023665 9388058 2210849..2213170 1 NC_014313.1 KEGG: xau:Xaut_2106 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 2213170 9388058 Hden_2156 Hyphomicrobium denitrificans ATCC 51888 general secretion pathway protein D YP_003756276.1 2210849 D 582899 CDS YP_003756277.1 300023666 9388059 complement(2213217..2213771) 1 NC_014313.1 PFAM: peptidase A24A prepilin type IV; KEGG: bja:blr6023 prepilin peptidase; peptidase A24A prepilin type IV 2213771 9388059 Hden_2157 Hyphomicrobium denitrificans ATCC 51888 peptidase A24A prepilin type IV YP_003756277.1 2213217 R 582899 CDS YP_003756278.1 300023667 9388060 complement(2213857..2214897) 1 NC_014313.1 KEGG: bra:BRADO3285 AraC/XylS family transcription factor; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2214897 9388060 Hden_2158 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003756278.1 2213857 R 582899 CDS YP_003756279.1 300023668 9388061 2215393..2217075 1 NC_014313.1 PFAM: carboxylesterase type B; KEGG: msl:Msil_2379 carboxylesterase type B; carboxylesterase type B 2217075 9388061 Hden_2159 Hyphomicrobium denitrificans ATCC 51888 carboxylesterase type B YP_003756279.1 2215393 D 582899 CDS YP_003756280.1 300023669 9388062 2217443..2219173 1 NC_014313.1 PFAM: carboxylesterase type B; KEGG: msl:Msil_3599 carboxylesterase type B; carboxylesterase type B 2219173 9388062 Hden_2160 Hyphomicrobium denitrificans ATCC 51888 carboxylesterase type B YP_003756280.1 2217443 D 582899 CDS YP_003756281.1 300023670 9388063 complement(2219236..2219427) 1 NC_014313.1 KEGG: lbr:LVIS_2054 hypothetical protein; hypothetical protein 2219427 9388063 Hden_2161 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756281.1 2219236 R 582899 CDS YP_003756282.1 300023671 9388064 2219694..2220680 1 NC_014313.1 KEGG: bra:BRADO3285 AraC/XylS family transcription factor; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2220680 9388064 Hden_2162 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003756282.1 2219694 D 582899 CDS YP_003756283.1 300023672 9388065 2220919..2222127 1 NC_014313.1 KEGG: msl:Msil_3887 hypothetical protein; hypothetical protein 2222127 9388065 Hden_2163 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756283.1 2220919 D 582899 CDS YP_003756284.1 300023673 9388066 2222260..2222850 1 NC_014313.1 KEGG: msl:Msil_1853 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2222850 9388066 Hden_2164 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003756284.1 2222260 D 582899 CDS YP_003756285.1 300023674 9388067 2223054..2224238 1 NC_014313.1 KEGG: msl:Msil_1852 hypothetical protein; hypothetical protein 2224238 9388067 Hden_2165 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756285.1 2223054 D 582899 CDS YP_003756286.1 300023675 9388068 2224524..2225837 1 NC_014313.1 PFAM: Mur ligase middle domain protein; KEGG: ppd:Ppro_2742 Mur ligase middle domain-containing protein; Mur ligase middle domain-containing protein 2225837 9388068 Hden_2166 Hyphomicrobium denitrificans ATCC 51888 Mur ligase middle domain-containing protein YP_003756286.1 2224524 D 582899 CDS YP_003756287.1 300023676 9388070 2226402..2227307 1 NC_014313.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: xau:Xaut_1906 hypothetical protein; hypothetical protein 2227307 9388070 Hden_2167 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756287.1 2226402 D 582899 CDS YP_003756288.1 300023677 9388071 complement(2227282..2228430) 1 NC_014313.1 TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: pla:Plav_3054 queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2228430 9388071 Hden_2168 Hyphomicrobium denitrificans ATCC 51888 queuine tRNA-ribosyltransferase YP_003756288.1 2227282 R 582899 CDS YP_003756289.1 300023678 9388072 complement(2228434..2229546) 1 NC_014313.1 KEGG: rec:RHECIAT_CH0002168 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 2229546 9388072 Hden_2169 Hyphomicrobium denitrificans ATCC 51888 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_003756289.1 2228434 R 582899 CDS YP_003756290.1 300023679 9388073 complement(2229557..2229964) 1 NC_014313.1 PFAM: protein of unknown function DUF423; KEGG: bid:Bind_3362 hypothetical protein; hypothetical protein 2229964 9388073 Hden_2170 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756290.1 2229557 R 582899 CDS YP_003756291.1 300023680 9388074 complement(2229964..2230440) 1 NC_014313.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: hne:HNE_1405 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2230440 9388074 Hden_2171 Hyphomicrobium denitrificans ATCC 51888 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003756291.1 2229964 R 582899 CDS YP_003756292.1 300023681 9388075 complement(2230513..2231052) 1 NC_014313.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mno:Mnod_5192 peptidyl-prolyl cis-trans isomerase cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2231052 9388075 Hden_2172 Hyphomicrobium denitrificans ATCC 51888 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_003756292.1 2230513 R 582899 CDS YP_003756293.1 300023682 9388076 complement(2231215..2231607) 1 NC_014313.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: psl:Psta_0102 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein 2231607 9388076 Hden_2173 Hyphomicrobium denitrificans ATCC 51888 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein YP_003756293.1 2231215 R 582899 CDS YP_003756294.1 300023683 9388077 complement(2231627..2232130) 1 NC_014313.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: azc:AZC_2326 coenzyme A biosynthesis protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 2232130 9388077 Hden_2174 Hyphomicrobium denitrificans ATCC 51888 pantetheine-phosphate adenylyltransferase YP_003756294.1 2231627 R 582899 CDS YP_003756295.1 300023684 9388078 complement(2232162..2233241) 1 NC_014313.1 KEGG: bja:blr3114 hypothetical protein; hypothetical protein 2233241 9388078 Hden_2175 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756295.1 2232162 R 582899 CDS YP_003756296.1 300023685 9388080 2234381..2235112 1 NC_014313.1 KEGG: mno:Mnod_6164 transcriptional regulator, Crp/Fnr family; PFAM: regulatory protein Crp; SMART: regulatory protein Crp; Crp/Fnr family transcriptional regulator 2235112 9388080 Hden_2177 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003756296.1 2234381 D 582899 CDS YP_003756297.1 300023686 9388081 complement(2235102..2237849) 1 NC_014313.1 KEGG: oca:OCAR_6233 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; manually curated; TIGRFAM: DNA gyrase subunit alpha; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit alpha 2237849 9388081 Hden_2178 Hyphomicrobium denitrificans ATCC 51888 DNA gyrase subunit alpha YP_003756297.1 2235102 R 582899 CDS YP_003756298.1 300023687 9388082 2238173..2238775 1 NC_014313.1 PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000940 hypothetical protein; PRC-barrel domain-containing protein 2238775 9388082 Hden_2179 Hyphomicrobium denitrificans ATCC 51888 PRC-barrel domain-containing protein YP_003756298.1 2238173 D 582899 CDS YP_003756299.1 300023688 9388083 2238912..2239283 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: bja:blr6637 cytochrome C; cytochrome C class I 2239283 9388083 Hden_2180 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003756299.1 2238912 D 582899 CDS YP_003756300.1 300023689 9388084 2239582..2240535 1 NC_014313.1 KEGG: gdj:Gdia_1776 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 2240535 9388084 Hden_2181 Hyphomicrobium denitrificans ATCC 51888 cation diffusion facilitator family transporter YP_003756300.1 2239582 D 582899 CDS YP_003756301.1 300023690 9388085 complement(2240756..2241277) 1 NC_014313.1 KEGG: bja:bll4698 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 2241277 9388085 Hden_2182 Hyphomicrobium denitrificans ATCC 51888 single-strand binding protein YP_003756301.1 2240756 R 582899 CDS YP_003756302.1 300023691 9388086 2241651..2242019 1 NC_014313.1 PFAM: protein of unknown function UPF0153; KEGG: scl:sce0610 hypothetical protein; hypothetical protein 2242019 9388086 Hden_2183 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756302.1 2241651 D 582899 CDS YP_003756303.1 300023692 9388087 2242096..2242509 1 NC_014313.1 KEGG: smt:Smal_1233 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2242509 9388087 Hden_2184 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003756303.1 2242096 D 582899 CDS YP_003756304.1 300023693 9388088 2242852..2243040 1 NC_014313.1 KEGG: mea:Mex_2p0836 hypothetical protein; hypothetical protein 2243040 9388088 Hden_2185 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756304.1 2242852 D 582899 CDS YP_003756305.1 300023694 9388089 2243183..2243578 1 NC_014313.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: msl:Msil_0879 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 2243578 9388089 Hden_2186 Hyphomicrobium denitrificans ATCC 51888 glutathione-dependent formaldehyde-activating protein YP_003756305.1 2243183 D 582899 CDS YP_003756306.1 300023695 9388090 complement(2243631..2244251) 1 NC_014313.1 KEGG: pap:PSPA7_2347 two-component sensor; hypothetical protein 2244251 9388090 Hden_2187 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756306.1 2243631 R 582899 CDS YP_003756307.1 300023696 9388091 complement(2245037..2245420) 1 NC_014313.1 KEGG: mar:MAE_16700 hypothetical protein; hypothetical protein 2245420 9388091 Hden_2188 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756307.1 2245037 R 582899 CDS YP_003756308.1 300023697 9388092 2245522..2248653 1 NC_014313.1 KEGG: rpe:RPE_2890 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; excinuclease ABC subunit A 2248653 9388092 Hden_2189 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC subunit A YP_003756308.1 2245522 D 582899 CDS YP_003756309.1 300023698 9388093 2249051..2249524 1 NC_014313.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: oca:OCAR_5407 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2249524 9388093 Hden_2190 Hyphomicrobium denitrificans ATCC 51888 3-demethylubiquinone-9 3-methyltransferase YP_003756309.1 2249051 D 582899 CDS YP_003756310.1 300023699 9388094 complement(2249705..2251144) 1 NC_014313.1 KEGG: hypothetical protein; hypothetical protein 2251144 9388094 Hden_2191 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756310.1 2249705 R 582899 CDS YP_003756311.1 300023700 9388095 complement(2251131..2252477) 1 NC_014313.1 KEGG: avn:Avin_17420 hypothetical protein; hypothetical protein 2252477 9388095 Hden_2192 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756311.1 2251131 R 582899 CDS YP_003756312.1 300023701 9388096 complement(2252487..2252873) 1 NC_014313.1 manually curated; KEGG: avn:Avin_17410 hypothetical protein; hypothetical protein 2252873 9388096 Hden_2193 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756312.1 2252487 R 582899 CDS YP_003756313.1 300023702 9388097 2253735..2254079 1 NC_014313.1 KEGG: rso:RSp1381 PhnA protein alkylphosphonate uptake; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; alkylphosphonate utilization operon protein PhnA 2254079 9388097 Hden_2194 Hyphomicrobium denitrificans ATCC 51888 alkylphosphonate utilization operon protein PhnA YP_003756313.1 2253735 D 582899 CDS YP_003756314.1 300023703 9388098 complement(2254306..2254605) 1 NC_014313.1 KEGG: oca:OCAR_5920 hypothetical protein; hypothetical protein 2254605 9388098 Hden_2195 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756314.1 2254306 R 582899 CDS YP_003756315.1 300023704 9388099 complement(2254686..2254808) 1 NC_014313.1 hypothetical protein 2254808 9388099 Hden_2196 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756315.1 2254686 R 582899 CDS YP_003756316.1 300023705 9388100 2254935..2255642 1 NC_014313.1 PFAM: carbonic anhydrase; KEGG: nha:Nham_0361 carbonic anhydrase; carbonic anhydrase 2255642 9388100 Hden_2197 Hyphomicrobium denitrificans ATCC 51888 carbonic anhydrase YP_003756316.1 2254935 D 582899 CDS YP_003756317.1 300023706 9388101 complement(2255668..2255946) 1 NC_014313.1 KEGG: svi:Svir_04970 IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase; hypothetical protein 2255946 9388101 Hden_2198 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756317.1 2255668 R 582899 CDS YP_003756318.1 300023707 9388102 complement(2256075..2256362) 1 NC_014313.1 KEGG: krh:KRH_11940 TerC family integral membrane protein; hypothetical protein 2256362 9388102 Hden_2199 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756318.1 2256075 R 582899 CDS YP_003756319.1 300023708 9388103 2256570..2257415 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcg:BCG9842_B2506 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2257415 9388103 Hden_2200 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756319.1 2256570 D 582899 CDS YP_003756320.1 300023709 9388104 2257467..2257754 1 NC_014313.1 KEGG: nha:Nham_2665 hypothetical protein; hypothetical protein 2257754 9388104 Hden_2201 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756320.1 2257467 D 582899 CDS YP_003756321.1 300023710 9388105 2257851..2259071 1 NC_014313.1 PFAM: beta-lactamase; KEGG: mmr:Mmar10_2357 beta-lactamase; beta-lactamase 2259071 9388105 Hden_2202 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003756321.1 2257851 D 582899 CDS YP_003756322.1 300023711 9388106 complement(2259068..2260387) 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: phe:Phep_2211 major facilitator superfamily MFS_1; major facilitator superfamily protein 2260387 9388106 Hden_2203 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003756322.1 2259068 R 582899 CDS YP_003756323.1 300023712 9388107 complement(2260414..2260701) 1 NC_014313.1 KEGG: bgl:bglu_2g09750 PvdI; hypothetical protein 2260701 9388107 Hden_2204 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756323.1 2260414 R 582899 CDS YP_003756324.1 300023713 9388108 2260915..2261049 1 NC_014313.1 hypothetical protein 2261049 9388108 Hden_2205 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756324.1 2260915 D 582899 CDS YP_003756325.1 300023714 9388109 complement(2261116..2262093) 1 NC_014313.1 TIGRFAM: TonB family protein; KEGG: rce:RC1_1801 protein TonB; TonB family protein 2262093 9388109 Hden_2206 Hyphomicrobium denitrificans ATCC 51888 TonB family protein YP_003756325.1 2261116 R 582899 CDS YP_003756326.1 300023715 9388110 2262331..2263200 1 NC_014313.1 PFAM: protein of unknown function DUF72; KEGG: mes:Meso_1394 hypothetical protein; hypothetical protein 2263200 9388110 Hden_2207 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756326.1 2262331 D 582899 CDS YP_003756327.1 300023716 9388111 complement(2263210..2263485) 1 NC_014313.1 KEGG: swi:Swit_4654 peptidase M48, Ste24p; peptidase M48, Ste24p 2263485 9388111 Hden_2208 Hyphomicrobium denitrificans ATCC 51888 peptidase M48, Ste24p YP_003756327.1 2263210 R 582899 CDS YP_003756328.1 300023717 9388112 complement(2263580..2263981) 1 NC_014313.1 KEGG: bja:bll5579 hypothetical protein; hypothetical protein 2263981 9388112 Hden_2209 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756328.1 2263580 R 582899 CDS YP_003756329.1 300023718 9388113 2264378..2264659 1 NC_014313.1 KEGG: bba:Bd1303 hypothetical protein; hypothetical protein 2264659 9388113 Hden_2210 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756329.1 2264378 D 582899 CDS YP_003756330.1 300023719 9388114 complement(2264747..2265148) 1 NC_014313.1 KEGG: nha:Nham_3495 hypothetical protein; hypothetical protein 2265148 9388114 Hden_2211 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756330.1 2264747 R 582899 CDS YP_003756331.1 300023720 9388115 2265264..2265812 1 NC_014313.1 KEGG: fal:FRAAL2692 hypothetical protein; hypothetical protein 2265812 9388115 Hden_2212 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756331.1 2265264 D 582899 CDS YP_003756332.1 300023721 9388116 2265947..2266357 1 NC_014313.1 KEGG: vpr:Vpar_0746 thioesterase superfamily protein; thioesterase superfamily protein 2266357 9388116 Hden_2213 Hyphomicrobium denitrificans ATCC 51888 thioesterase superfamily protein YP_003756332.1 2265947 D 582899 CDS YP_003756333.1 300023722 9388117 2266440..2267603 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: bra:BRADO1469 hypothetical protein; hypothetical protein 2267603 9388117 Hden_2214 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756333.1 2266440 D 582899 CDS YP_003756334.1 300023723 9388118 complement(2267686..2268495) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mlo:mll1184 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2268495 9388118 Hden_2215 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003756334.1 2267686 R 582899 CDS YP_003756335.1 300023724 9388119 complement(2268687..2270135) 1 NC_014313.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein; DNA photolyase FAD-binding protein 2270135 9388119 Hden_2216 Hyphomicrobium denitrificans ATCC 51888 DNA photolyase FAD-binding protein YP_003756335.1 2268687 R 582899 CDS YP_003756336.1 300023725 9388120 complement(2270211..2271887) 1 NC_014313.1 KEGG: bhy:BHWA1_02529 TPR domain-containing protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein 2271887 9388120 Hden_2217 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756336.1 2270211 R 582899 CDS YP_003756337.1 300023726 9388121 2272059..2272613 1 NC_014313.1 KEGG: smt:Smal_2560 hypothetical protein; hypothetical protein 2272613 9388121 Hden_2218 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756337.1 2272059 D 582899 CDS YP_003756338.1 300023727 9388122 complement(2272610..2274172) 1 NC_014313.1 KEGG: rpt:Rpal_3313 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; carbohydrate kinase 2274172 9388122 Hden_2219 Hyphomicrobium denitrificans ATCC 51888 carbohydrate kinase YP_003756338.1 2272610 R 582899 CDS YP_003756339.1 300023728 9388123 2274431..2274769 1 NC_014313.1 PFAM: nitrogen regulatory protein P-II; KEGG: xau:Xaut_3586 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2274769 9388123 Hden_2220 Hyphomicrobium denitrificans ATCC 51888 nitrogen regulatory protein P-II YP_003756339.1 2274431 D 582899 CDS YP_003756340.1 300023729 9388124 2274860..2276269 1 NC_014313.1 KEGG: avi:Avi_2375 glutamine synthetase; TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; glutamine synthetase 2276269 9388124 Hden_2221 Hyphomicrobium denitrificans ATCC 51888 glutamine synthetase YP_003756340.1 2274860 D 582899 CDS YP_003756341.1 300023730 9388125 complement(2276346..2276651) 1 NC_014313.1 KEGG: cvi:CV_1735 ATP-binding/permease fusion ABC transporter; hypothetical protein 2276651 9388125 Hden_2222 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756341.1 2276346 R 582899 CDS YP_003756342.1 300023731 9388126 complement(2276741..2277925) 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: mea:Mex_1p4860 permease of major facilitator transporter (tat pathway signal); major facilitator superfamily protein 2277925 9388126 Hden_2223 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003756342.1 2276741 R 582899 CDS YP_003756343.1 300023732 9388127 complement(2277996..2279108) 1 NC_014313.1 PFAM: aminotransferase class I and II; KEGG: mlo:mll7737 histidinol-phosphate aminotransferase; class I and II aminotransferase 2279108 9388127 Hden_2224 Hyphomicrobium denitrificans ATCC 51888 class I and II aminotransferase YP_003756343.1 2277996 R 582899 CDS YP_003756344.1 300023733 9388128 complement(2279128..2279565) 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: ara:Arad_2494 hypothetical protein; hypothetical protein 2279565 9388128 Hden_2225 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756344.1 2279128 R 582899 CDS YP_003756345.1 300023734 9388129 complement(2279640..2280071) 1 NC_014313.1 KEGG: dol:Dole_1153 hypothetical protein; hypothetical protein 2280071 9388129 Hden_2226 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756345.1 2279640 R 582899 CDS YP_003756346.1 300023735 9388130 2280280..2280786 1 NC_014313.1 KEGG: mgr:MGG_03952 hypothetical protein; hypothetical protein 2280786 9388130 Hden_2227 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756346.1 2280280 D 582899 CDS YP_003756347.1 300023736 9388131 2280884..2281375 1 NC_014313.1 KEGG: rru:Rru_A2751 hypothetical protein; hypothetical protein 2281375 9388131 Hden_2228 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756347.1 2280884 D 582899 CDS YP_003756348.1 300023737 9388132 2281388..2282086 1 NC_014313.1 KEGG: act:ACLA_048030 hypothetical protein; hypothetical protein 2282086 9388132 Hden_2229 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756348.1 2281388 D 582899 CDS YP_003756349.1 300023738 9388133 2282191..2283522 1 NC_014313.1 KEGG: dsa:Desal_2391 hypothetical protein; hypothetical protein 2283522 9388133 Hden_2230 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756349.1 2282191 D 582899 CDS YP_003756350.1 300023739 9388134 2283630..2284589 1 NC_014313.1 KEGG: azc:AZC_0095 outer membrane lipoprotein-sorting protein; hypothetical protein 2284589 9388134 Hden_2231 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756350.1 2283630 D 582899 CDS YP_003756351.1 300023740 9388135 complement(2284586..2285047) 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pmy:Pmen_0132 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2285047 9388135 Hden_2232 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003756351.1 2284586 R 582899 CDS YP_003756352.1 300023741 9388136 2285294..2286358 1 NC_014313.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase 2286358 9388136 Hden_2233 Hyphomicrobium denitrificans ATCC 51888 polysaccharide deacetylase YP_003756352.1 2285294 D 582899 CDS YP_003756353.1 300023742 9388138 2286934..2287662 1 NC_014313.1 TIGRFAM: lipoate-protein ligase B; KEGG: xau:Xaut_4082 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 2287662 9388138 Hden_2234 Hyphomicrobium denitrificans ATCC 51888 lipoate-protein ligase B YP_003756353.1 2286934 D 582899 CDS YP_003756354.1 300023743 9388139 complement(2287748..2288122) 1 NC_014313.1 KEGG: sme:SMc04174 signal peptide protein; hypothetical protein 2288122 9388139 Hden_2235 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756354.1 2287748 R 582899 CDS YP_003756355.1 300023744 9388140 2288373..2289221 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mag:amb4341 transcriptional regulator; LysR family transcriptional regulator 2289221 9388140 Hden_2236 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003756355.1 2288373 D 582899 CDS YP_003756356.1 300023745 9388141 complement(2289356..2291374) 1 NC_014313.1 KEGG: bra:BRADO3249 acyl-CoA carboxylase biotin-carrying subunit; alpha chain; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; SMART: biotin carboxylase domain protein; carbamoyl-phosphate synthase L chain ATP-binding protein 2291374 9388141 Hden_2237 Hyphomicrobium denitrificans ATCC 51888 carbamoyl-phosphate synthase L chain ATP-binding protein YP_003756356.1 2289356 R 582899 CDS YP_003756357.1 300023746 9388142 complement(2291574..2292584) 1 NC_014313.1 KEGG: mlo:mll0880 hypothetical protein; hypothetical protein 2292584 9388142 Hden_2238 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756357.1 2291574 R 582899 CDS YP_003756358.1 300023747 9388143 complement(2293184..2293903) 1 NC_014313.1 KEGG: mdi:METDI1533 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; DNA repair protein RecO 2293903 9388143 Hden_2239 Hyphomicrobium denitrificans ATCC 51888 DNA repair protein RecO YP_003756358.1 2293184 R 582899 CDS YP_003756359.1 300023748 9388144 complement(2293953..2294891) 1 NC_014313.1 KEGG: bcs:BCAN_A0676 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era 2294891 9388144 Hden_2240 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein Era YP_003756359.1 2293953 R 582899 CDS YP_003756360.1 300023749 9388145 complement(2294878..2295585) 1 NC_014313.1 SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: mrd:Mrad2831_3455 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 2295585 9388145 Hden_2241 Hyphomicrobium denitrificans ATCC 51888 ribonuclease III YP_003756360.1 2294878 R 582899 CDS YP_003756361.1 300023750 9388146 complement(2295606..2296373) 1 NC_014313.1 TIGRFAM: signal peptidase I; KEGG: xau:Xaut_3880 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; signal peptidase I 2296373 9388146 Hden_2242 Hyphomicrobium denitrificans ATCC 51888 signal peptidase I YP_003756361.1 2295606 R 582899 CDS YP_003756362.1 300023751 9388147 complement(2296572..2296985) 1 NC_014313.1 KEGG: bid:Bind_2443 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-acyl-carrier-protein synthase 2296985 9388147 Hden_2243 Hyphomicrobium denitrificans ATCC 51888 holo-acyl-carrier-protein synthase YP_003756362.1 2296572 R 582899 CDS YP_003756363.1 300023752 9388148 complement(2296982..2297800) 1 NC_014313.1 TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: pla:Plav_2871 pyridoxine 5'-phosphate synthase; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 2297800 9388148 Hden_2244 Hyphomicrobium denitrificans ATCC 51888 pyridoxal phosphate biosynthetic protein PdxJ YP_003756363.1 2296982 R 582899 CDS YP_003756364.1 300023753 9388149 complement(2297848..2298414) 1 NC_014313.1 PFAM: protein of unknown function DUF2062; KEGG: pla:Plav_2870 hypothetical protein; hypothetical protein 2298414 9388149 Hden_2245 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756364.1 2297848 R 582899 CDS YP_003756365.1 300023754 9388150 complement(2298468..2300687) 1 NC_014313.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: xau:Xaut_3877 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; (p)ppGpp synthetase I SpoT/RelA 2300687 9388150 Hden_2246 Hyphomicrobium denitrificans ATCC 51888 (p)ppGpp synthetase I SpoT/RelA YP_003756365.1 2298468 R 582899 CDS YP_003756366.1 300023755 9388151 complement(2300791..2301249) 1 NC_014313.1 KEGG: bid:Bind_2446 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 2301249 9388151 Hden_2247 Hyphomicrobium denitrificans ATCC 51888 DNA-directed RNA polymerase subunit omega YP_003756366.1 2300791 R 582899 CDS YP_003756367.1 300023756 9388152 2301632..2302273 1 NC_014313.1 PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 hypothetical protein; hypothetical protein 2302273 9388152 Hden_2248 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756367.1 2301632 D 582899 CDS YP_003756368.1 300023757 9388153 2302305..2302964 1 NC_014313.1 PFAM: uracil-DNA glycosylase superfamily; KEGG: pla:Plav_2864 uracil-DNA glycosylase superfamily protein; uracil-DNA glycosylase superfamily protein 2302964 9388153 Hden_2249 Hyphomicrobium denitrificans ATCC 51888 uracil-DNA glycosylase superfamily protein YP_003756368.1 2302305 D 582899 CDS YP_003756369.1 300023758 9388154 complement(2302945..2303514) 1 NC_014313.1 PFAM: redoxin; KEGG: rxy:Rxyl_1080 redoxin; redoxin 2303514 9388154 Hden_2250 Hyphomicrobium denitrificans ATCC 51888 redoxin YP_003756369.1 2302945 R 582899 CDS YP_003756370.1 300023759 9388155 complement(2303518..2303991) 1 NC_014313.1 KEGG: smpB; SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; SsrA-binding protein 2303991 9388155 Hden_2251 Hyphomicrobium denitrificans ATCC 51888 SsrA-binding protein YP_003756370.1 2303518 R 582899 CDS YP_003756371.1 300023760 9388156 complement(2304016..2304906) 1 NC_014313.1 KEGG: met:M446_0697 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2304906 9388156 Hden_2252 Hyphomicrobium denitrificans ATCC 51888 dihydrodipicolinate synthase YP_003756371.1 2304016 R 582899 CDS YP_003756372.1 300023761 9388157 2305191..2307410 1 NC_014313.1 PFAM: lytic transglycosylase catalytic; KEGG: met:M446_0698 lytic transglycosylase catalytic; lytic transglycosylase 2307410 9388157 Hden_2253 Hyphomicrobium denitrificans ATCC 51888 lytic transglycosylase YP_003756372.1 2305191 D 582899 CDS YP_003756373.1 300023762 9388158 2307450..2308439 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_2860 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2308439 9388158 Hden_2254 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003756373.1 2307450 D 582899 CDS YP_003756374.1 300023763 9388159 complement(2308379..2310379) 1 NC_014313.1 KEGG: jan:Jann_1177 hypothetical protein; hypothetical protein 2310379 9388159 Hden_2255 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756374.1 2308379 R 582899 CDS YP_003756375.1 300023764 9388160 complement(2310435..2310527) 1 NC_014313.1 hypothetical protein 2310527 9388160 Hden_2256 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756375.1 2310435 R 582899 CDS YP_003756376.1 300023765 9388161 complement(2310558..2312708) 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 2312708 9388161 Hden_2257 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003756376.1 2310558 R 582899 CDS YP_003756377.1 300023766 9388162 complement(2313018..2314079) 1 NC_014313.1 TIGRFAM: siroheme synthase; KEGG: azc:AZC_0234 uroporphyrin-III C-methyltransferase; siroheme synthase 2314079 9388162 Hden_2258 Hyphomicrobium denitrificans ATCC 51888 siroheme synthase YP_003756377.1 2313018 R 582899 CDS YP_003756378.1 300023767 9388163 complement(2314223..2315980) 1 NC_014313.1 KEGG: msl:Msil_1406 glucose/sorbosone dehydrogenase-like protein; glucose/sorbosone dehydrogenase 2315980 9388163 Hden_2259 Hyphomicrobium denitrificans ATCC 51888 glucose/sorbosone dehydrogenase YP_003756378.1 2314223 R 582899 CDS YP_003756379.1 300023768 9388164 complement(2316029..2316961) 1 NC_014313.1 KEGG: mch:Mchl_5509 hypothetical protein; hypothetical protein 2316961 9388164 Hden_2260 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756379.1 2316029 R 582899 CDS YP_003756380.1 300023769 9388165 2317312..2317593 1 NC_014313.1 KEGG: mrd:Mrad2831_0982 transmembrane protein; transmembrane protein 2317593 9388165 Hden_2261 Hyphomicrobium denitrificans ATCC 51888 transmembrane protein YP_003756380.1 2317312 D 582899 CDS YP_003756381.1 300023770 9388166 complement(2317670..2317909) 1 NC_014313.1 hypothetical protein 2317909 9388166 Hden_2262 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756381.1 2317670 R 582899 CDS YP_003756382.1 300023771 9388167 2318214..2318411 1 NC_014313.1 PFAM: CsbD family protein; KEGG: rpb:RPB_1394 CsbD-like; CsbD family protein 2318411 9388167 Hden_2263 Hyphomicrobium denitrificans ATCC 51888 CsbD family protein YP_003756382.1 2318214 D 582899 CDS YP_003756383.1 300023772 9388168 2318544..2318912 1 NC_014313.1 KEGG: rci:RCIX2708 FAD-dependent oxidoreductase; hypothetical protein 2318912 9388168 Hden_2264 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756383.1 2318544 D 582899 CDS YP_003756384.1 300023773 9388169 2319403..2319603 1 NC_014313.1 KEGG: hmg:100202525 similar to predicted protein; hypothetical protein 2319603 9388169 Hden_2265 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756384.1 2319403 D 582899 CDS YP_003756385.1 300023774 9388170 2319628..2319906 1 NC_014313.1 KEGG: mgr:MGG_08642 hypothetical protein; hypothetical protein 2319906 9388170 Hden_2266 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756385.1 2319628 D 582899 CDS YP_003756386.1 300023775 9388171 complement(2319947..2320066) 1 NC_014313.1 hypothetical protein 2320066 9388171 Hden_2267 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756386.1 2319947 R 582899 CDS YP_003756387.1 300023776 9388172 2320630..2321556 1 NC_014313.1 PFAM: secretion protein HlyD; KEGG: spl:Spea_2191 secretion protein HlyD; secretion protein HlyD 2321556 9388172 Hden_2268 Hyphomicrobium denitrificans ATCC 51888 secretion protein HlyD YP_003756387.1 2320630 D 582899 CDS YP_003756388.1 300023777 9388173 2321543..2323066 1 NC_014313.1 KEGG: spl:Spea_2190 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 2323066 9388173 Hden_2269 Hyphomicrobium denitrificans ATCC 51888 EmrB/QacA subfamily drug resistance transporter YP_003756388.1 2321543 D 582899 CDS YP_003756389.1 300023778 9388174 complement(2323063..2323497) 1 NC_014313.1 KEGG: azc:AZC_0972 response regulator receiver; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2323497 9388174 Hden_2270 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003756389.1 2323063 R 582899 CDS YP_003756390.1 300023779 9388175 complement(2323505..2323924) 1 NC_014313.1 KEGG: msl:Msil_0850 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2323924 9388175 Hden_2271 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003756390.1 2323505 R 582899 CDS YP_003756391.1 300023780 9388176 complement(2324075..2324542) 1 NC_014313.1 KEGG: nha:Nham_2813 hypothetical protein; hypothetical protein 2324542 9388176 Hden_2272 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756391.1 2324075 R 582899 CDS YP_003756392.1 300023781 9388177 2324670..2325377 1 NC_014313.1 KEGG: nwi:Nwi_2417 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; Crp/Fnr family transcriptional regulator 2325377 9388177 Hden_2273 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003756392.1 2324670 D 582899 CDS YP_003756393.1 300023782 9388178 2325487..2326671 1 NC_014313.1 PFAM: NnrS family protein; KEGG: nha:Nham_0648 NnrS; NnrS family protein 2326671 9388178 Hden_2274 Hyphomicrobium denitrificans ATCC 51888 NnrS family protein YP_003756393.1 2325487 D 582899 CDS YP_003756394.1 300023783 9388179 complement(2326682..2326951) 1 NC_014313.1 KEGG: stp:Strop_1886 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 2326951 9388179 Hden_2275 Hyphomicrobium denitrificans ATCC 51888 phenylalanyl-tRNA synthetase subunit alpha YP_003756394.1 2326682 R 582899 CDS YP_003756395.1 300023784 9388180 2326999..2327478 1 NC_014313.1 KEGG: mag:amb0011 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 2327478 9388180 Hden_2276 Hyphomicrobium denitrificans ATCC 51888 ybaK/ebsC protein YP_003756395.1 2326999 D 582899 CDS YP_003756396.1 300023785 9388181 complement(2327519..2327848) 1 NC_014313.1 KEGG: ace:Acel_2081 major facilitator transporter; hypothetical protein 2327848 9388181 Hden_2277 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756396.1 2327519 R 582899 CDS YP_003756397.1 300023786 9388182 complement(2328075..2328569) 1 NC_014313.1 KEGG: bmr:BMI_II610 nucleoside diphosphate kinase regulator; GreA/GreB family elongation factor 2328569 9388182 Hden_2278 Hyphomicrobium denitrificans ATCC 51888 GreA/GreB family elongation factor YP_003756397.1 2328075 R 582899 CDS YP_003756398.1 300023787 9388183 complement(2328858..2330324) 1 NC_014313.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cce:Ccel_0875 coenzyme F390 synthetase-like protein; AMP-dependent synthetase and ligase 2330324 9388183 Hden_2279 Hyphomicrobium denitrificans ATCC 51888 AMP-dependent synthetase and ligase YP_003756398.1 2328858 R 582899 CDS YP_003756399.1 300023788 9388184 2330712..2330855 1 NC_014313.1 hypothetical protein 2330855 9388184 Hden_2280 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756399.1 2330712 D 582899 CDS YP_003756400.1 300023789 9388185 2330932..2331468 1 NC_014313.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: tkm:TK90_2611 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2331468 9388185 Hden_2281 Hyphomicrobium denitrificans ATCC 51888 metal dependent phosphohydrolase YP_003756400.1 2330932 D 582899 CDS YP_003756401.1 300023790 9388186 2331636..2332352 1 NC_014313.1 PFAM: protein of unknown function DUF374; KEGG: mes:Meso_0437 hypothetical protein; hypothetical protein 2332352 9388186 Hden_2282 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756401.1 2331636 D 582899 CDS YP_003756402.1 300023791 9388187 complement(2332378..2333631) 1 NC_014313.1 KEGG: rpa:RPA3082 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase 2333631 9388187 Hden_2283 Hyphomicrobium denitrificans ATCC 51888 Cyclopropane-fatty-acyl-phospholipid synthase YP_003756402.1 2332378 R 582899 CDS YP_003756403.1 300023792 9388189 complement(2334166..2335686) 1 NC_014313.1 PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase; family 2 glycosyl transferase 2335686 9388189 Hden_2285 Hyphomicrobium denitrificans ATCC 51888 family 2 glycosyl transferase YP_003756403.1 2334166 R 582899 CDS YP_003756404.1 300023793 9388190 2335820..2336677 1 NC_014313.1 KEGG: rpc:RPC_0729 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2336677 9388190 Hden_2286 Hyphomicrobium denitrificans ATCC 51888 family 3 extracellular solute-binding protein YP_003756404.1 2335820 D 582899 CDS YP_003756405.1 300023794 9388191 2336770..2338140 1 NC_014313.1 PFAM: glycoside hydrolase; KEGG: mag:amb1842 beta-glucosidase-related glycosidase; glycoside hydrolase 2338140 9388191 Hden_2287 Hyphomicrobium denitrificans ATCC 51888 glycoside hydrolase YP_003756405.1 2336770 D 582899 CDS YP_003756406.1 300023795 9388192 2338247..2338561 1 NC_014313.1 KEGG: nml:Namu_1492 chloride channel core; chloride channel core 2338561 9388192 Hden_2288 Hyphomicrobium denitrificans ATCC 51888 chloride channel core YP_003756406.1 2338247 D 582899 CDS YP_003756407.1 300023796 9388193 2338619..2339443 1 NC_014313.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: mes:Meso_2843 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 2339443 9388193 Hden_2289 Hyphomicrobium denitrificans ATCC 51888 intradiol ring-cleavage dioxygenase YP_003756407.1 2338619 D 582899 CDS YP_003756408.1 300023797 9388194 2339550..2339678 1 NC_014313.1 hypothetical protein 2339678 9388194 Hden_2290 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756408.1 2339550 D 582899 CDS YP_003756409.1 300023798 9388195 complement(2339931..2340305) 1 NC_014313.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: vvy:VV0371 endonuclease; excinuclease ABC C subunit domain-containing protein 2340305 9388195 Hden_2291 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC C subunit domain-containing protein YP_003756409.1 2339931 R 582899 CDS YP_003756410.1 300023799 9388196 complement(2340520..2341560) 1 NC_014313.1 KEGG: nwi:Nwi_1402 hypothetical protein; hypothetical protein 2341560 9388196 Hden_2292 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756410.1 2340520 R 582899 CDS YP_003756411.1 300023800 9388197 complement(2341637..2342539) 1 NC_014313.1 PFAM: formate/nitrite transporter; KEGG: pap:PSPA7_2455 formate/nitrate transporter; formate/nitrite transporter 2342539 9388197 Hden_2293 Hyphomicrobium denitrificans ATCC 51888 formate/nitrite transporter YP_003756411.1 2341637 R 582899 CDS YP_003756412.1 300023801 9388198 complement(2342539..2343213) 1 NC_014313.1 KEGG: sil:SPOA0173 hypothetical protein; hypothetical protein 2343213 9388198 Hden_2294 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756412.1 2342539 R 582899 CDS YP_003756413.1 300023802 9388199 complement(2343293..2345089) 1 NC_014313.1 PFAM: glycosyl transferase family 39; KEGG: met:M446_5864 glycosyl transferase; glycosyl transferase family 39 2345089 9388199 Hden_2295 Hyphomicrobium denitrificans ATCC 51888 glycosyl transferase family 39 YP_003756413.1 2343293 R 582899 CDS YP_003756414.1 300023803 9388200 2345175..2345753 1 NC_014313.1 TIGRFAM: orotate phosphoribosyltransferase; KEGG: rpd:RPD_0955 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 2345753 9388200 Hden_2296 Hyphomicrobium denitrificans ATCC 51888 orotate phosphoribosyltransferase YP_003756414.1 2345175 D 582899 CDS YP_003756415.1 300023804 9388201 complement(2345923..2346594) 1 NC_014313.1 KEGG: bbt:BBta_2303 carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 2346594 9388201 Hden_2297 Hyphomicrobium denitrificans ATCC 51888 carboxymethylenebutenolidase YP_003756415.1 2345923 R 582899 CDS YP_003756416.1 300023805 9388202 complement(2346744..2348336) 1 NC_014313.1 KEGG: azc:AZC_4063 phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase (ATP) 2348336 9388202 Hden_2298 Hyphomicrobium denitrificans ATCC 51888 phosphoenolpyruvate carboxykinase (ATP) YP_003756416.1 2346744 R 582899 CDS YP_003756417.1 300023806 9388203 2348798..2349502 1 NC_014313.1 KEGG: msl:Msil_0255 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 2349502 9388203 Hden_2299 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003756417.1 2348798 D 582899 CDS YP_003756418.1 300023807 9388204 2349531..2351369 1 NC_014313.1 KEGG: azc:AZC_4066 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2351369 9388204 Hden_2300 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003756418.1 2349531 D 582899 CDS YP_003756419.1 300023808 9388205 2351353..2351841 1 NC_014313.1 KEGG: rce:RC1_2867 HPr kinase; HPr kinase 2351841 9388205 Hden_2301 Hyphomicrobium denitrificans ATCC 51888 HPr kinase YP_003756419.1 2351353 D 582899 CDS YP_003756420.1 300023809 9388206 2351948..2352349 1 NC_014313.1 PFAM: PTS system fructose subfamily IIA component; KEGG: xau:Xaut_2848 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component 2352349 9388206 Hden_2302 Hyphomicrobium denitrificans ATCC 51888 PTS system fructose subfamily IIA component YP_003756420.1 2351948 D 582899 CDS YP_003756421.1 300023810 9388207 2352364..2352669 1 NC_014313.1 KEGG: rru:Rru_A3446 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr 2352669 9388207 Hden_2303 Hyphomicrobium denitrificans ATCC 51888 phosphotransferase system, phosphocarrier protein HPr YP_003756421.1 2352364 D 582899 CDS YP_003756422.1 300023811 9388208 complement(2352748..2354148) 1 NC_014313.1 KEGG: TadE family protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A 2354148 9388208 Hden_2304 Hyphomicrobium denitrificans ATCC 51888 von Willebrand factor A YP_003756422.1 2352748 R 582899 CDS YP_003756423.1 300023812 9388209 2354562..2355971 1 NC_014313.1 TIGRFAM: adenosylhomocysteinase; KEGG: bbt:BBta_5698 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 2355971 9388209 Hden_2305 Hyphomicrobium denitrificans ATCC 51888 adenosylhomocysteinase YP_003756423.1 2354562 D 582899 CDS YP_003756424.1 300023813 9388210 2356244..2358754 1 NC_014313.1 KEGG: oca:OCAR_4487 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 2358754 9388210 Hden_2306 Hyphomicrobium denitrificans ATCC 51888 multi-sensor signal transduction histidine kinase YP_003756424.1 2356244 D 582899 CDS YP_003756425.1 300023814 9388211 2358767..2360308 1 NC_014313.1 PFAM: protein of unknown function UPF0079; aminoglycoside phosphotransferase; KEGG: rpt:Rpal_0081 protein of unknown function UPF0079; hypothetical protein 2360308 9388211 Hden_2307 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756425.1 2358767 D 582899 CDS YP_003756426.1 300023815 9388212 2360331..2361086 1 NC_014313.1 PFAM: nucleotidyl transferase; KEGG: bbt:BBta_0088 nucleotidyl transferase family protein; nucleotidyl transferase 2361086 9388212 Hden_2308 Hyphomicrobium denitrificans ATCC 51888 nucleotidyl transferase YP_003756426.1 2360331 D 582899 CDS YP_003756427.1 300023816 9388213 2361086..2364202 1 NC_014313.1 TIGRFAM: double-strand break repair protein AddB; KEGG: azl:AZL_027200 double-strand break repair protein; double-strand break repair protein AddB 2364202 9388213 Hden_2309 Hyphomicrobium denitrificans ATCC 51888 double-strand break repair protein AddB YP_003756427.1 2361086 D 582899 CDS YP_003756428.1 300023817 9388214 2364199..2367789 1 NC_014313.1 KEGG: pla:Plav_0138 double-strand break repair helicase AddA; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; double-strand break repair helicase AddA 2367789 9388214 Hden_2310 Hyphomicrobium denitrificans ATCC 51888 double-strand break repair helicase AddA YP_003756428.1 2364199 D 582899 CDS YP_003756429.1 300023818 9388215 2367889..2368221 1 NC_014313.1 KEGG: rak:A1C_00010 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; thioredoxin 2368221 9388215 Hden_2311 Hyphomicrobium denitrificans ATCC 51888 thioredoxin YP_003756429.1 2367889 D 582899 CDS YP_003756430.1 300023819 9388216 complement(2368307..2368906) 1 NC_014313.1 PFAM: isochorismatase hydrolase; KEGG: mfa:Mfla_2540 isochorismatase hydrolase; isochorismatase hydrolase 2368906 9388216 Hden_2312 Hyphomicrobium denitrificans ATCC 51888 isochorismatase hydrolase YP_003756430.1 2368307 R 582899 CDS YP_003756431.1 300023820 9388217 complement(2368956..2369384) 1 NC_014313.1 PFAM: protein of unknown function DUF779; KEGG: hau:Haur_1158 hypothetical protein; hypothetical protein 2369384 9388217 Hden_2313 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756431.1 2368956 R 582899 CDS YP_003756432.1 300023821 9388218 complement(2369461..2369835) 1 NC_014313.1 PFAM: protein of unknown function DUF779; KEGG: azl:AZL_d02860 hypothetical protein; hypothetical protein 2369835 9388218 Hden_2314 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756432.1 2369461 R 582899 CDS YP_003756433.1 300023822 9388219 complement(2369965..2371485) 1 NC_014313.1 PFAM: aldehyde dehydrogenase; KEGG: sjp:SJA_C2-05820 aldehyde dehydrogenase; aldehyde dehydrogenase 2371485 9388219 Hden_2315 Hyphomicrobium denitrificans ATCC 51888 aldehyde dehydrogenase YP_003756433.1 2369965 R 582899 CDS YP_003756434.1 300023823 9388220 complement(2371701..2373050) 1 NC_014313.1 TIGRFAM: FolC bifunctional protein; KEGG: pla:Plav_0140 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; FolC bifunctional protein 2373050 9388220 Hden_2316 Hyphomicrobium denitrificans ATCC 51888 FolC bifunctional protein YP_003756434.1 2371701 R 582899 CDS YP_003756435.1 300023824 9388221 complement(2373090..2374172) 1 NC_014313.1 KEGG: azc:AZC_1024 acetyl-CoA carboxylase carboxyl transferase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase subunit beta; PFAM: carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta 2374172 9388221 Hden_2317 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_003756435.1 2373090 R 582899 CDS YP_003756436.1 300023825 9388222 complement(2374356..2375186) 1 NC_014313.1 TIGRFAM: tryptophan synthase, subunit alpha; KEGG: azc:AZC_1020 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2375186 9388222 Hden_2318 Hyphomicrobium denitrificans ATCC 51888 tryptophan synthase subunit alpha YP_003756436.1 2374356 R 582899 CDS YP_003756437.1 300023826 9388223 complement(2375187..2376428) 1 NC_014313.1 KEGG: atc:AGR_C_28 tryptophan synthase beta chain; TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; tryptophan synthase subunit beta 2376428 9388223 Hden_2319 Hyphomicrobium denitrificans ATCC 51888 tryptophan synthase subunit beta YP_003756437.1 2375187 R 582899 CDS YP_003756438.1 300023827 9388224 complement(2376464..2377114) 1 NC_014313.1 KEGG: bja:blr0744 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 2377114 9388224 Hden_2320 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylanthranilate isomerase YP_003756438.1 2376464 R 582899 CDS YP_003756439.1 300023828 9388225 complement(2377125..2377364) 1 NC_014313.1 KEGG: rpc:RPC_2258 hypothetical protein; hypothetical protein 2377364 9388225 Hden_2321 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756439.1 2377125 R 582899 CDS YP_003756440.1 300023829 9388226 complement(2377380..2377730) 1 NC_014313.1 KEGG: rec:RHECIAT_CH0000440 hypothetical protein; hypothetical protein 2377730 9388226 Hden_2322 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756440.1 2377380 R 582899 CDS YP_003756441.1 300023830 9388227 complement(2377760..2378059) 1 NC_014313.1 TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; KEGG: rpt:Rpal_0069 integration host factor subunit beta; SMART: histone family protein DNA-binding protein; integration host factor subunit beta 2378059 9388227 Hden_2323 Hyphomicrobium denitrificans ATCC 51888 integration host factor subunit beta YP_003756441.1 2377760 R 582899 CDS YP_003756442.1 300023831 9388228 complement(2378093..2379058) 1 NC_014313.1 KEGG: mes:Meso_3671 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 2379058 9388228 Hden_2324 Hyphomicrobium denitrificans ATCC 51888 signal peptide peptidase SppA, 36K type YP_003756442.1 2378093 R 582899 CDS YP_003756443.1 300023832 9388229 complement(2379249..2380967) 1 NC_014313.1 KEGG: bmr:BMI_I28 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 2380967 9388229 Hden_2325 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S1 YP_003756443.1 2379249 R 582899 CDS YP_003756444.1 300023833 9388230 complement(2381265..2382380) 1 NC_014313.1 KEGG: mlo:mlr4654 hypothetical protein; hypothetical protein 2382380 9388230 Hden_2326 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756444.1 2381265 R 582899 CDS YP_003756445.1 300023834 9388231 2382937..2383200 1 NC_014313.1 KEGG: bja:bll0561 hypothetical protein; hypothetical protein 2383200 9388231 Hden_2327 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756445.1 2382937 D 582899 CDS YP_003756446.1 300023835 9388232 complement(2383236..2383877) 1 NC_014313.1 TIGRFAM: cytidylate kinase; KEGG: mno:Mnod_7108 cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 2383877 9388232 Hden_2328 Hyphomicrobium denitrificans ATCC 51888 cytidylate kinase YP_003756446.1 2383236 R 582899 CDS YP_003756447.1 300023836 9388233 complement(2383874..2385214) 1 NC_014313.1 KEGG: msl:Msil_0615 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase 2385214 9388233 Hden_2329 Hyphomicrobium denitrificans ATCC 51888 3-phosphoshikimate 1-carboxyvinyltransferase YP_003756447.1 2383874 R 582899 CDS YP_003756448.1 300023837 9388234 2385434..2385811 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: met:M446_6550 hypothetical protein; hypothetical protein 2385811 9388234 Hden_2330 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756448.1 2385434 D 582899 CDS YP_003756449.1 300023838 9388236 2386125..2386364 1 NC_014313.1 PFAM: excinuclease ABC C subunit domain protein; KEGG: rle:RL0110 hypothetical protein; excinuclease ABC C subunit domain-containing protein 2386364 9388236 Hden_2331 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC C subunit domain-containing protein YP_003756449.1 2386125 D 582899 CDS YP_003756450.1 300023839 9388237 2386493..2388544 1 NC_014313.1 PFAM: carbon starvation protein CstA; KEGG: rpd:RPD_1551 carbon starvation protein CstA; carbon starvation protein CstA 2388544 9388237 Hden_2332 Hyphomicrobium denitrificans ATCC 51888 carbon starvation protein CstA YP_003756450.1 2386493 D 582899 CDS YP_003756451.1 300023840 9388238 2388548..2388763 1 NC_014313.1 PFAM: protein of unknown function DUF466; KEGG: aav:Aave_4227 hypothetical protein; hypothetical protein 2388763 9388238 Hden_2333 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756451.1 2388548 D 582899 CDS YP_003756452.1 300023841 9388239 2388836..2390659 1 NC_014313.1 KEGG: oca:OCAR_6476 holdfast attachment protein C (protein HfaC); PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2390659 9388239 Hden_2334 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756452.1 2388836 D 582899 CDS YP_003756453.1 300023842 9388240 complement(2390985..2391656) 1 NC_014313.1 KEGG: rer:RER_53650 oxidase; hypothetical protein 2391656 9388240 Hden_2335 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756453.1 2390985 R 582899 CDS YP_003756454.1 300023843 9388241 2391904..2392350 1 NC_014313.1 PFAM: heat shock protein Hsp20; KEGG: bid:Bind_0512 heat shock protein HSP20; heat shock protein Hsp20 2392350 9388241 Hden_2336 Hyphomicrobium denitrificans ATCC 51888 heat shock protein Hsp20 YP_003756454.1 2391904 D 582899 CDS YP_003756455.1 300023844 9388242 2392491..2392775 1 NC_014313.1 PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein; hypothetical protein 2392775 9388242 Hden_2337 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756455.1 2392491 D 582899 CDS YP_003756456.1 300023845 9388243 complement(2392857..2393831) 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: azc:AZC_1016 NAD dependent epimerase; NAD-dependent epimerase/dehydratase 2393831 9388243 Hden_2338 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003756456.1 2392857 R 582899 CDS YP_003756457.1 300023846 9388245 2394371..2394718 1 NC_014313.1 KEGG: har:HEAR3303 ArsR regulator operon ArsI; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 2394718 9388245 Hden_2339 Hyphomicrobium denitrificans ATCC 51888 ArsR family transcriptional regulator YP_003756457.1 2394371 D 582899 CDS YP_003756458.1 300023847 9388246 2394715..2395236 1 NC_014313.1 KEGG: mag:amb1828 protein-tyrosine-phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; protein-tyrosine phosphatase, low molecular weight 2395236 9388246 Hden_2340 Hyphomicrobium denitrificans ATCC 51888 protein-tyrosine phosphatase, low molecular weight YP_003756458.1 2394715 D 582899 CDS YP_003756459.1 300023848 9388247 2395239..2396303 1 NC_014313.1 KEGG: oca:OCAR_4230 arsenic resistance protein; TIGRFAM: arsenic resistance protein; PFAM: sodium symporter; arsenic resistance protein 2396303 9388247 Hden_2341 Hyphomicrobium denitrificans ATCC 51888 arsenic resistance protein YP_003756459.1 2395239 D 582899 CDS YP_003756460.1 300023849 9388248 2396307..2396723 1 NC_014313.1 KEGG: mlo:mll2167 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase; arsenate reductase 2396723 9388248 Hden_2342 Hyphomicrobium denitrificans ATCC 51888 arsenate reductase YP_003756460.1 2396307 D 582899 CDS YP_003756461.1 300023850 9388249 2396720..2397454 1 NC_014313.1 KEGG: oca:OCAR_4229 arsenical resistance protein ArsH; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; arsenical resistance protein ArsH 2397454 9388249 Hden_2343 Hyphomicrobium denitrificans ATCC 51888 arsenical resistance protein ArsH YP_003756461.1 2396720 D 582899 CDS YP_003756462.1 300023851 9388250 complement(2397476..2398783) 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: gdi:GDI_0334 major facilitator transporter; major facilitator superfamily protein 2398783 9388250 Hden_2344 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003756462.1 2397476 R 582899 CDS YP_003756463.1 300023852 9388251 complement(2398937..2402125) 1 NC_014313.1 KEGG: app:CAP2UW1_2548 delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2402125 9388251 Hden_2345 Hyphomicrobium denitrificans ATCC 51888 delta-1-pyrroline-5-carboxylate dehydrogenase YP_003756463.1 2398937 R 582899 CDS YP_003756464.1 300023853 9388252 2402306..2403166 1 NC_014313.1 manually curated; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; KEGG: azc:AZC_1589 pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 2403166 9388252 Hden_2346 Hyphomicrobium denitrificans ATCC 51888 pantoate/beta-alanine ligase YP_003756464.1 2402306 D 582899 CDS YP_003756465.1 300023854 9388253 2403338..2405347 1 NC_014313.1 SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV subunit beta; KEGG: mes:Meso_1015 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; DNA topoisomerase IV subunit beta 2405347 9388253 Hden_2347 Hyphomicrobium denitrificans ATCC 51888 DNA topoisomerase IV subunit beta YP_003756465.1 2403338 D 582899 CDS YP_003756466.1 300023855 9388254 complement(2405437..2406834) 1 NC_014313.1 PFAM: fatty acid desaturase; KEGG: sal:Sala_0465 fatty acid desaturase; fatty acid desaturase 2406834 9388254 Hden_2348 Hyphomicrobium denitrificans ATCC 51888 fatty acid desaturase YP_003756466.1 2405437 R 582899 CDS YP_003756467.1 300023856 9388255 2407144..2407815 1 NC_014313.1 PFAM: major intrinsic protein; KEGG: spe:Spro_1009 aquaporin Z; major intrinsic protein 2407815 9388255 Hden_2349 Hyphomicrobium denitrificans ATCC 51888 major intrinsic protein YP_003756467.1 2407144 D 582899 CDS YP_003756468.1 300023857 9388256 2408150..2409772 1 NC_014313.1 KEGG: mrd:Mrad2831_0999 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicase ; helicase; DEAD/DEAH box helicase 2409772 9388256 Hden_2350 Hyphomicrobium denitrificans ATCC 51888 DEAD/DEAH box helicase YP_003756468.1 2408150 D 582899 CDS YP_003756469.1 300023858 9388257 2409979..2410251 1 NC_014313.1 KEGG: tgu:100190018 evectin-2 pleckstrin homology domain containing family B member 2-like; hypothetical protein 2410251 9388257 Hden_2351 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756469.1 2409979 D 582899 CDS YP_003756470.1 300023859 9388258 complement(2410346..2410738) 1 NC_014313.1 KEGG: azc:AZC_3609 HesB protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 2410738 9388258 Hden_2352 Hyphomicrobium denitrificans ATCC 51888 iron-sulfur cluster assembly accessory protein YP_003756470.1 2410346 R 582899 CDS YP_003756471.1 300023860 9388259 complement(2410802..2411263) 1 NC_014313.1 KEGG: mpo:Mpop_4461 FeS assembly SUF system protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; FeS assembly SUF system protein 2411263 9388259 Hden_2353 Hyphomicrobium denitrificans ATCC 51888 FeS assembly SUF system protein YP_003756471.1 2410802 R 582899 CDS YP_003756472.1 300023861 9388260 complement(2411276..2412559) 1 NC_014313.1 KEGG: mes:Meso_1778 SufS subfamily cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase 2412559 9388260 Hden_2354 Hyphomicrobium denitrificans ATCC 51888 SufS subfamily cysteine desulfurase YP_003756472.1 2411276 R 582899 CDS YP_003756473.1 300023862 9388261 complement(2412568..2413902) 1 NC_014313.1 KEGG: nha:Nham_2326 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD 2413902 9388261 Hden_2355 Hyphomicrobium denitrificans ATCC 51888 FeS assembly protein SufD YP_003756473.1 2412568 R 582899 CDS YP_003756474.1 300023863 9388262 complement(2413904..2414659) 1 NC_014313.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: pde:Pden_3966 FeS assembly ATPase SufC; SMART: ATPase AAA; FeS assembly ATPase SufC 2414659 9388262 Hden_2356 Hyphomicrobium denitrificans ATCC 51888 FeS assembly ATPase SufC YP_003756474.1 2413904 R 582899 CDS YP_003756475.1 300023864 9388263 complement(2414715..2414975) 1 NC_014313.1 KEGG: gdj:Gdia_0591 hypothetical protein; hypothetical protein 2414975 9388263 Hden_2357 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756475.1 2414715 R 582899 CDS YP_003756476.1 300023865 9388264 complement(2414979..2416448) 1 NC_014313.1 KEGG: atc:AGR_C_3348 ABC transporter membrane protein XF1476; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; FeS assembly protein SufB 2416448 9388264 Hden_2358 Hyphomicrobium denitrificans ATCC 51888 FeS assembly protein SufB YP_003756476.1 2414979 R 582899 CDS YP_003756477.1 300023866 9388265 complement(2416504..2418075) 1 NC_014313.1 TIGRFAM: Rrf2 family transcriptional regulator; KEGG: rce:RC1_1616 cysteine desulfurase; PFAM: aminotransferase class V; protein of unknown function UPF0074; Rrf2 family transcriptional regulator 2418075 9388265 Hden_2359 Hyphomicrobium denitrificans ATCC 51888 Rrf2 family transcriptional regulator YP_003756477.1 2416504 R 582899 CDS YP_003756478.1 300023867 9388266 2418342..2419127 1 NC_014313.1 PFAM: peptidase S15; KEGG: bid:Bind_0096 hypothetical protein; peptidase S15 2419127 9388266 Hden_2360 Hyphomicrobium denitrificans ATCC 51888 peptidase S15 YP_003756478.1 2418342 D 582899 CDS YP_003756479.1 300023868 9388267 complement(2419155..2420294) 1 NC_014313.1 PFAM: protein of unknown function UPF0075; KEGG: azc:AZC_3618 anhydro-N-acetylmuramic acid kinase; hypothetical protein 2420294 9388267 Hden_2361 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756479.1 2419155 R 582899 CDS YP_003756480.1 300023869 9388268 2420352..2421608 1 NC_014313.1 SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: rpc:RPC_2845 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tyrosyl-tRNA synthetase 2421608 9388268 Hden_2362 Hyphomicrobium denitrificans ATCC 51888 tyrosyl-tRNA synthetase YP_003756480.1 2420352 D 582899 CDS YP_003756481.1 300023870 9388269 complement(2421631..2425299) 1 NC_014313.1 KEGG: pla:Plav_3269 hypothetical protein; hypothetical protein 2425299 9388269 Hden_2363 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756481.1 2421631 R 582899 CDS YP_003756482.1 300023871 9388270 2425613..2426080 1 NC_014313.1 PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: sme:SMc00524 bacterioferritin comigratory protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2426080 9388270 Hden_2364 Hyphomicrobium denitrificans ATCC 51888 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_003756482.1 2425613 D 582899 CDS YP_003756483.1 300023872 9388271 2426288..2426806 1 NC_014313.1 PFAM: protein of unknown function DUF583; KEGG: pla:Plav_3273 hypothetical protein; hypothetical protein 2426806 9388271 Hden_2365 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756483.1 2426288 D 582899 CDS YP_003756484.1 300023873 9388272 complement(2426880..2427416) 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_019520 acetyltransferase; GCN5-like N-acetyltransferase 2427416 9388272 Hden_2366 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003756484.1 2426880 R 582899 CDS YP_003756485.1 300023874 9388273 complement(2427468..2427881) 1 NC_014313.1 KEGG: lch:Lcho_0747 outer membrane adhesin like proteiin; outer membrane adhesin-like protein 2427881 9388273 Hden_2367 Hyphomicrobium denitrificans ATCC 51888 outer membrane adhesin-like protein YP_003756485.1 2427468 R 582899 CDS YP_003756486.1 300023875 9388274 complement(2428013..2428657) 1 NC_014313.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: tkm:TK90_2079 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2428657 9388274 Hden_2368 Hyphomicrobium denitrificans ATCC 51888 multiple antibiotic resistance (MarC)-like protein YP_003756486.1 2428013 R 582899 CDS YP_003756487.1 300023876 9388275 2428816..2429103 1 NC_014313.1 PFAM: Usg family protein; KEGG: pzu:PHZ_c3229 usg protein, probable subunit of phosphoribosylanthranilate isomerase; Usg family protein 2429103 9388275 Hden_2369 Hyphomicrobium denitrificans ATCC 51888 Usg family protein YP_003756487.1 2428816 D 582899 CDS YP_003756488.1 300023877 9388276 2429228..2429914 1 NC_014313.1 KEGG: met:M446_6435 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 2429914 9388276 Hden_2370 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003756488.1 2429228 D 582899 CDS YP_003756489.1 300023878 9388277 2429999..2430523 1 NC_014313.1 KEGG: bja:blr2558 hypothetical protein; hypothetical protein 2430523 9388277 Hden_2371 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756489.1 2429999 D 582899 CDS YP_003756490.1 300023879 9388278 2430534..2430863 1 NC_014313.1 PFAM: blue (type 1) copper domain protein; KEGG: sil:SPO0256 plastocyanin/azurin family copper binding protein; blue (type 1) copper domain-containing protein 2430863 9388278 Hden_2372 Hyphomicrobium denitrificans ATCC 51888 blue (type 1) copper domain-containing protein YP_003756490.1 2430534 D 582899 CDS YP_003756491.1 300023880 9388279 complement(2430886..2431899) 1 NC_014313.1 KEGG: mno:Mnod_7690 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase 2431899 9388279 Hden_2373 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003756491.1 2430886 R 582899 CDS YP_003756492.1 300023881 9388280 2432100..2432606 1 NC_014313.1 KEGG: pml:ATP_00463 probable oligopeptide ABC transporter substrate-binding protein; hypothetical protein 2432606 9388280 Hden_2374 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756492.1 2432100 D 582899 CDS YP_003756493.1 300023882 9388281 2432883..2433092 1 NC_014313.1 KEGG: bja:bsl4595 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2433092 9388281 Hden_2375 Hyphomicrobium denitrificans ATCC 51888 cold-shock DNA-binding domain-containing protein YP_003756493.1 2432883 D 582899 CDS YP_003756494.1 300023883 9388282 complement(2433160..2433762) 1 NC_014313.1 PFAM: protein of unknown function DUF1285; KEGG: oan:Oant_1610 hypothetical protein; hypothetical protein 2433762 9388282 Hden_2376 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756494.1 2433160 R 582899 CDS YP_003756495.1 300023884 9388283 2433888..2434970 1 NC_014313.1 KEGG: azc:AZC_3509 methanol dehydrogenase regulator; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA; ATPase AAA 2434970 9388283 Hden_2377 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003756495.1 2433888 D 582899 CDS YP_003756496.1 300023885 9388284 2434977..2435948 1 NC_014313.1 PFAM: protein of unknown function DUF58; KEGG: azc:AZC_3510 hypothetical protein; hypothetical protein 2435948 9388284 Hden_2378 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756496.1 2434977 D 582899 CDS YP_003756497.1 300023886 9388285 2435945..2438917 1 NC_014313.1 TIGRFAM: conserved hypothetical protein; KEGG: pla:Plav_2232 hypothetical protein; hypothetical protein 2438917 9388285 Hden_2379 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756497.1 2435945 D 582899 CDS YP_003756498.1 300023887 9388286 2438928..2441063 1 NC_014313.1 PFAM: protein of unknown function DUF1355; KEGG: rpe:RPE_0937 hypothetical protein; hypothetical protein 2441063 9388286 Hden_2380 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756498.1 2438928 D 582899 CDS YP_003756499.1 300023888 9388287 2441087..2441884 1 NC_014313.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bav:BAV1034 dehydrogenase; 6-phosphogluconate dehydrogenase 2441884 9388287 Hden_2381 Hyphomicrobium denitrificans ATCC 51888 6-phosphogluconate dehydrogenase YP_003756499.1 2441087 D 582899 CDS YP_003756500.1 300023889 9388288 2441976..2443592 1 NC_014313.1 KEGG: hne:HNE_0811 hypothetical protein; hypothetical protein 2443592 9388288 Hden_2382 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756500.1 2441976 D 582899 CDS YP_003756501.1 300023890 9388289 2443969..2445861 1 NC_014313.1 KEGG: oca:OCAR_7033 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 2445861 9388289 Hden_2383 Hyphomicrobium denitrificans ATCC 51888 thiamine biosynthesis protein ThiC YP_003756501.1 2443969 D 582899 CDS YP_003756502.1 300023891 9388290 2445913..2446197 1 NC_014313.1 KEGG: azl:AZL_a10050 osmoprotectant transporter permease; osmoprotectant transporter permease 2446197 9388290 Hden_2384 Hyphomicrobium denitrificans ATCC 51888 osmoprotectant transporter permease YP_003756502.1 2445913 D 582899 CDS YP_003756503.1 300023892 9388291 2446222..2446632 1 NC_014313.1 KEGG: isc:IscW_ISCW000396 N-terminal acetyltransferase; hypothetical protein 2446632 9388291 Hden_2385 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756503.1 2446222 D 582899 CDS YP_003756504.1 300023893 9388292 2446720..2447346 1 NC_014313.1 KEGG: bja:blr6669 hypothetical protein; hypothetical protein 2447346 9388292 Hden_2386 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756504.1 2446720 D 582899 CDS YP_003756505.1 300023894 9388293 complement(2447943..2449271) 1 NC_014313.1 PFAM: polysaccharide deacetylase; KEGG: rpe:RPE_2396 polysaccharide deacetylase; polysaccharide deacetylase 2449271 9388293 Hden_2387 Hyphomicrobium denitrificans ATCC 51888 polysaccharide deacetylase YP_003756505.1 2447943 R 582899 CDS YP_003756506.1 300023895 9388294 2449498..2449830 1 NC_014313.1 KEGG: oca:OCAR_4274 hypothetical protein; hypothetical protein 2449830 9388294 Hden_2388 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756506.1 2449498 D 582899 CDS YP_003756507.1 300023896 9388295 2450000..2450488 1 NC_014313.1 PFAM: protein of unknown function DUF583; KEGG: sil:SPO2231 hypothetical protein; hypothetical protein 2450488 9388295 Hden_2389 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756507.1 2450000 D 582899 CDS YP_003756508.1 300023897 9388296 complement(2450587..2450898) 1 NC_014313.1 KEGG: dma:DMR_34920 hypothetical protein; hypothetical protein 2450898 9388296 Hden_2390 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756508.1 2450587 R 582899 CDS YP_003756509.1 300023898 9388297 2451084..2452055 1 NC_014313.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: rru:Rru_A1883 magnesium/cobalt transporter CorA; Mg2 transporter protein CorA family protein 2452055 9388297 Hden_2391 Hyphomicrobium denitrificans ATCC 51888 Mg2 transporter protein CorA family protein YP_003756509.1 2451084 D 582899 CDS YP_003756510.1 300023899 9388298 2452592..2453179 1 NC_014313.1 KEGG: xau:Xaut_4388 lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; lipoprotein A 2453179 9388298 Hden_2392 Hyphomicrobium denitrificans ATCC 51888 lipoprotein A YP_003756510.1 2452592 D 582899 CDS YP_003756511.1 300023900 9388299 2453277..2453882 1 NC_014313.1 KEGG: bbt:BBta_3870 RlpA family protein; TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; lipoprotein A 2453882 9388299 Hden_2393 Hyphomicrobium denitrificans ATCC 51888 lipoprotein A YP_003756511.1 2453277 D 582899 CDS YP_003756512.1 300023901 9388300 complement(2453906..2454289) 1 NC_014313.1 KEGG: xau:Xaut_1900 hypothetical protein; hypothetical protein 2454289 9388300 Hden_2394 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756512.1 2453906 R 582899 CDS YP_003756513.1 300023902 9388301 2454421..2455290 1 NC_014313.1 KEGG: bbt:BBta_0665 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 2455290 9388301 Hden_2395 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756513.1 2454421 D 582899 CDS YP_003756514.1 300023903 9388302 complement(2455331..2456425) 1 NC_014313.1 PFAM: patatin; KEGG: azc:AZC_4576 hypothetical protein; patatin 2456425 9388302 Hden_2396 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003756514.1 2455331 R 582899 CDS YP_003756515.1 300023904 9388303 complement(2456739..2457644) 1 NC_014313.1 PFAM: metallophosphoesterase; KEGG: rpc:RPC_1382 metallophosphoesterase; metallophosphoesterase 2457644 9388303 Hden_2397 Hyphomicrobium denitrificans ATCC 51888 metallophosphoesterase YP_003756515.1 2456739 R 582899 CDS YP_003756516.1 300023905 9388304 2457740..2458189 1 NC_014313.1 KEGG: rpt:Rpal_4874 NUDIX hydrolase; NUDIX hydrolase 2458189 9388304 Hden_2398 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003756516.1 2457740 D 582899 CDS YP_003756517.1 300023906 9388305 2458226..2458744 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_3230 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2458744 9388305 Hden_2399 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003756517.1 2458226 D 582899 CDS YP_003756518.1 300023907 9388306 2458959..2461091 1 NC_014313.1 PFAM: protein of unknown function DUF1217; KEGG: avi:Avi_0969 hypothetical protein; hypothetical protein 2461091 9388306 Hden_2400 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756518.1 2458959 D 582899 CDS YP_003756519.1 300023908 9388307 2461145..2461372 1 NC_014313.1 KEGG: tgo:TGME49_081420 histone deacetylase; histone deacetylase 2461372 9388307 Hden_2401 Hyphomicrobium denitrificans ATCC 51888 histone deacetylase YP_003756519.1 2461145 D 582899 CDS YP_003756520.1 300023909 9388308 complement(2461417..2462304) 1 NC_014313.1 PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase 2462304 9388308 Hden_2402 Hyphomicrobium denitrificans ATCC 51888 polysaccharide deacetylase YP_003756520.1 2461417 R 582899 CDS YP_003756521.1 300023910 9388309 2462484..2462894 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: rhi:NGR_b16940 NTP pyrophosphohydrolase, MutT family; NUDIX hydrolase 2462894 9388309 Hden_2403 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003756521.1 2462484 D 582899 CDS YP_003756522.1 300023911 9388310 complement(2462921..2463556) 1 NC_014313.1 KEGG: spu:586898 similar to N-acetyltransferase ESCO1 (Establishment of cohesion 1 homolog 1); hypothetical protein 2463556 9388310 Hden_2404 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756522.1 2462921 R 582899 CDS YP_003756523.1 300023912 9388311 complement(2463676..2464965) 1 NC_014313.1 SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: mch:Mchl_0962 adenylosuccinate synthase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase 2464965 9388311 Hden_2405 Hyphomicrobium denitrificans ATCC 51888 adenylosuccinate synthetase YP_003756523.1 2463676 R 582899 CDS YP_003756524.1 300023913 9388312 complement(2465071..2466807) 1 NC_014313.1 KEGG: bbt:BBta_1827 hypothetical protein; hypothetical protein 2466807 9388312 Hden_2406 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756524.1 2465071 R 582899 CDS YP_003756525.1 300023914 9388313 complement(2466923..2468215) 1 NC_014313.1 TIGRFAM: phosphoserine aminotransferase; KEGG: bid:Bind_1270 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase 2468215 9388313 Hden_2407 Hyphomicrobium denitrificans ATCC 51888 phosphoserine aminotransferase YP_003756525.1 2466923 R 582899 CDS YP_003756526.1 300023915 9388314 complement(2468257..2469195) 1 NC_014313.1 KEGG: mch:Mchl_5304 porin opacity type; hypothetical protein 2469195 9388314 Hden_2408 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756526.1 2468257 R 582899 CDS YP_003756527.1 300023916 9388315 complement(2469441..2470244) 1 NC_014313.1 KEGG: mpo:Mpop_5382 porin opacity type; porin opacity type 2470244 9388315 Hden_2409 Hyphomicrobium denitrificans ATCC 51888 porin opacity type YP_003756527.1 2469441 R 582899 CDS YP_003756528.1 300023917 9388316 complement(2470514..2471863) 1 NC_014313.1 KEGG: rlg:Rleg_3490 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase 2471863 9388316 Hden_2410 Hyphomicrobium denitrificans ATCC 51888 phosphoglucosamine mutase YP_003756528.1 2470514 R 582899 CDS YP_003756529.1 300023918 9388317 2472189..2473097 1 NC_014313.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: hba:Hbal_1849 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2473097 9388317 Hden_2411 Hyphomicrobium denitrificans ATCC 51888 cobyrinic acid ac-diamide synthase YP_003756529.1 2472189 D 582899 CDS YP_003756530.1 300023919 9388318 2473125..2473589 1 NC_014313.1 KEGG: pst:PSPTO_B0024 resolvase; hypothetical protein 2473589 9388318 Hden_2412 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756530.1 2473125 D 582899 CDS YP_003756531.1 300023920 9388319 2473632..2474972 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_1097 amino acid permease-associated region; amino acid permease-associated protein 2474972 9388319 Hden_2413 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003756531.1 2473632 D 582899 CDS YP_003756532.1 300023921 9388320 complement(2474977..2475591) 1 NC_014313.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_7101 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2475591 9388320 Hden_2414 Hyphomicrobium denitrificans ATCC 51888 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_003756532.1 2474977 R 582899 CDS YP_003756533.1 300023922 9388321 complement(2475623..2476726) 1 NC_014313.1 TIGRFAM: dihydropteroate synthase; KEGG: rsk:RSKD131_0172 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 2476726 9388321 Hden_2415 Hyphomicrobium denitrificans ATCC 51888 dihydropteroate synthase YP_003756533.1 2475623 R 582899 CDS YP_003756534.1 300023923 9388322 complement(2477060..2479015) 1 NC_014313.1 SMART: ATPase AAA; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: mes:Meso_3167 membrane protease FtsH catalytic subunit; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATP-dependent metalloprotease FtsH 2479015 9388322 Hden_2416 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent metalloprotease FtsH YP_003756534.1 2477060 R 582899 CDS YP_003756535.1 300023924 9388323 complement(2479147..2480478) 1 NC_014313.1 KEGG: pla:Plav_2125 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 2480478 9388323 Hden_2417 Hyphomicrobium denitrificans ATCC 51888 tRNA(Ile)-lysidine synthetase YP_003756535.1 2479147 R 582899 CDS YP_003756536.1 300023925 9388324 complement(2480502..2481503) 1 NC_014313.1 TIGRFAM: tol-pal system protein YbgF; KEGG: pla:Plav_2124 Tol-Pal system YbgF; tol-pal system protein YbgF 2481503 9388324 Hden_2418 Hyphomicrobium denitrificans ATCC 51888 tol-pal system protein YbgF YP_003756536.1 2480502 R 582899 CDS YP_003756537.1 300023926 9388325 complement(2481677..2482465) 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO1176 outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein); OmpA/MotB domain-containing protein 2482465 9388325 Hden_2419 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003756537.1 2481677 R 582899 CDS YP_003756538.1 300023927 9388326 complement(2482615..2483130) 1 NC_014313.1 KEGG: rpc:RPC_4748 OmpA/MotB; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 2483130 9388326 Hden_2420 Hyphomicrobium denitrificans ATCC 51888 peptidoglycan-associated lipoprotein YP_003756538.1 2482615 R 582899 CDS YP_003756539.1 300023928 9388327 complement(2483575..2483700) 1 NC_014313.1 hypothetical protein 2483700 9388327 Hden_2421 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756539.1 2483575 R 582899 CDS YP_003756540.1 300023929 9388328 complement(2483735..2483869) 1 NC_014313.1 hypothetical protein 2483869 9388328 Hden_2422 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756540.1 2483735 R 582899 CDS YP_003756541.1 300023930 9388329 complement(2484126..2485463) 1 NC_014313.1 KEGG: oan:Oant_1218 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; hypothetical protein; Tol-Pal system beta propeller repeat protein TolB 2485463 9388329 Hden_2423 Hyphomicrobium denitrificans ATCC 51888 Tol-Pal system beta propeller repeat protein TolB YP_003756541.1 2484126 R 582899 CDS YP_003756542.1 300023931 9388330 complement(2485543..2486697) 1 NC_014313.1 TIGRFAM: protein TolA; KEGG: mpo:Mpop_5303 protein TolA; protein TolA 2486697 9388330 Hden_2424 Hyphomicrobium denitrificans ATCC 51888 protein TolA YP_003756542.1 2485543 R 582899 CDS YP_003756543.1 300023932 9388331 complement(2486700..2487158) 1 NC_014313.1 KEGG: azc:AZC_0522 biopolymer transporter; TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; protein TolR 2487158 9388331 Hden_2425 Hyphomicrobium denitrificans ATCC 51888 protein TolR YP_003756543.1 2486700 R 582899 CDS YP_003756544.1 300023933 9388332 complement(2487163..2487879) 1 NC_014313.1 KEGG: oca:OCAR_7293 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 2487879 9388332 Hden_2426 Hyphomicrobium denitrificans ATCC 51888 protein TolQ YP_003756544.1 2487163 R 582899 CDS YP_003756545.1 300023934 9388333 2488532..2488831 1 NC_014313.1 KEGG: mpo:Mpop_0219 hypothetical protein; hypothetical protein 2488831 9388333 Hden_2427 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756545.1 2488532 D 582899 CDS YP_003756546.1 300023935 9388334 2488843..2489229 1 NC_014313.1 KEGG: msl:Msil_2630 hypothetical protein; hypothetical protein 2489229 9388334 Hden_2428 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756546.1 2488843 D 582899 CDS YP_003756547.1 300023936 9388335 2489239..2489424 1 NC_014313.1 KEGG: mlo:msl7316 hypothetical protein; hypothetical protein 2489424 9388335 Hden_2429 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756547.1 2489239 D 582899 CDS YP_003756548.1 300023937 9388336 2489421..2490806 1 NC_014313.1 PFAM: amino acid permease-associated region; KEGG: smd:Smed_3297 amino acid permease-associated region; amino acid permease-associated protein 2490806 9388336 Hden_2430 Hyphomicrobium denitrificans ATCC 51888 amino acid permease-associated protein YP_003756548.1 2489421 D 582899 CDS YP_003756549.1 300023938 9388337 2490874..2491554 1 NC_014313.1 KEGG: msl:Msil_2627 hypothetical protein; hypothetical protein 2491554 9388337 Hden_2431 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756549.1 2490874 D 582899 CDS YP_003756550.1 300023939 9388338 2491551..2491838 1 NC_014313.1 KEGG: smd:Smed_3295 hypothetical protein; hypothetical protein 2491838 9388338 Hden_2432 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756550.1 2491551 D 582899 CDS YP_003756551.1 300023940 9388339 complement(2491868..2492350) 1 NC_014313.1 KEGG: rpc:RPC_1924 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; tol-pal system-associated acyl-CoA thioesterase 2492350 9388339 Hden_2433 Hyphomicrobium denitrificans ATCC 51888 tol-pal system-associated acyl-CoA thioesterase YP_003756551.1 2491868 R 582899 CDS YP_003756552.1 300023941 9388340 complement(2492347..2493288) 1 NC_014313.1 PFAM: metallophosphoesterase; KEGG: rlg:Rleg_3517 metallophosphoesterase; metallophosphoesterase 2493288 9388340 Hden_2434 Hyphomicrobium denitrificans ATCC 51888 metallophosphoesterase YP_003756552.1 2492347 R 582899 CDS YP_003756553.1 300023942 9388341 complement(2493400..2494446) 1 NC_014313.1 TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase RuvB domain; ATPase AAA central domain protein; KEGG: bbt:BBta_6906 Holliday junction DNA helicase RuvB; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 2494446 9388341 Hden_2435 Hyphomicrobium denitrificans ATCC 51888 Holliday junction DNA helicase RuvB YP_003756553.1 2493400 R 582899 CDS YP_003756554.1 300023943 9388342 complement(2494526..2494957) 1 NC_014313.1 KEGG: dac:Daci_2258 acriflavin resistance protein; hypothetical protein 2494957 9388342 Hden_2436 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756554.1 2494526 R 582899 CDS YP_003756555.1 300023944 9388343 complement(2495082..2495699) 1 NC_014313.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: bja:blr1536 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 2495699 9388343 Hden_2437 Hyphomicrobium denitrificans ATCC 51888 Holliday junction DNA helicase RuvA YP_003756555.1 2495082 R 582899 CDS YP_003756556.1 300023945 9388344 complement(2495696..2496223) 1 NC_014313.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: rpt:Rpal_1289 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 2496223 9388344 Hden_2438 Hyphomicrobium denitrificans ATCC 51888 crossover junction endodeoxyribonuclease RuvC YP_003756556.1 2495696 R 582899 CDS YP_003756557.1 300023946 9388345 complement(2496220..2498319) 1 NC_014313.1 KEGG: bcv:Bcav_2280 integral membrane protein; hypothetical protein 2498319 9388345 Hden_2439 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756557.1 2496220 R 582899 CDS YP_003756558.1 300023947 9388346 2498494..2498784 1 NC_014313.1 KEGG: alcohol dehydrogenase GroES domain protein; hypothetical protein 2498784 9388346 Hden_2440 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756558.1 2498494 D 582899 CDS YP_003756559.1 300023948 9388347 complement(2498797..2499546) 1 NC_014313.1 PFAM: protein of unknown function DUF28; KEGG: sme:SMc03969 hypothetical protein; hypothetical protein 2499546 9388347 Hden_2441 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756559.1 2498797 R 582899 CDS YP_003756560.1 300023949 9388348 complement(2499637..2500452) 1 NC_014313.1 PFAM: metallophosphoesterase; KEGG: pla:Plav_2112 metallophosphoesterase; metallophosphoesterase 2500452 9388348 Hden_2442 Hyphomicrobium denitrificans ATCC 51888 metallophosphoesterase YP_003756560.1 2499637 R 582899 CDS YP_003756561.1 300023950 9388349 complement(2500466..2501056) 1 NC_014313.1 KEGG: oca:OCAR_7307 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2501056 9388349 Hden_2443 Hyphomicrobium denitrificans ATCC 51888 5-formyltetrahydrofolate cyclo-ligase YP_003756561.1 2500466 R 582899 CDS YP_003756562.1 300023951 9388351 complement(2501295..2501582) 1 NC_014313.1 PFAM: protein of unknown function DUF710; KEGG: pla:Plav_2110 hypothetical protein; hypothetical protein 2501582 9388351 Hden_2444 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756562.1 2501295 R 582899 CDS YP_003756563.1 300023952 9388352 complement(2501628..2501843) 1 NC_014313.1 KEGG: chl:Chy400_3800 propeptide PepSY amd peptidase M4; hypothetical protein 2501843 9388352 Hden_2445 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756563.1 2501628 R 582899 CDS YP_003756564.1 300023953 9388353 2502136..2503143 1 NC_014313.1 SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: xau:Xaut_3075 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase 2503143 9388353 Hden_2446 Hyphomicrobium denitrificans ATCC 51888 glyceraldehyde-3-phosphate dehydrogenase YP_003756564.1 2502136 D 582899 CDS YP_003756565.1 300023954 9388354 2503230..2504264 1 NC_014313.1 KEGG: oan:Oant_1185 fructose-bisphosphate aldolase; PFAM: fructose-bisphosphate aldolase class-I; fructose-bisphosphate aldolase 2504264 9388354 Hden_2447 Hyphomicrobium denitrificans ATCC 51888 fructose-bisphosphate aldolase YP_003756565.1 2503230 D 582899 CDS YP_003756566.1 300023955 9388355 complement(2504364..2506595) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2506595 9388355 Hden_2448 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003756566.1 2504364 R 582899 CDS YP_003756567.1 300023956 9388356 2506884..2507528 1 NC_014313.1 PFAM: thiamine monophosphate synthase; KEGG: hne:HNE_3185 thiamine-phosphate pyrophosphorylase; thiamine monophosphate synthase 2507528 9388356 Hden_2449 Hyphomicrobium denitrificans ATCC 51888 thiamine monophosphate synthase YP_003756567.1 2506884 D 582899 CDS YP_003756568.1 300023957 9388357 2507525..2508613 1 NC_014313.1 KEGG: oca:OCAR_7315 Sel1; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 2508613 9388357 Hden_2450 Hyphomicrobium denitrificans ATCC 51888 Sel1 domain-containing protein repeat-containing protein YP_003756568.1 2507525 D 582899 CDS YP_003756569.1 300023958 9388358 2508732..2509526 1 NC_014313.1 PFAM: inositol monophosphatase; KEGG: pla:Plav_2101 inositol-phosphate phosphatase; inositol monophosphatase 2509526 9388358 Hden_2451 Hyphomicrobium denitrificans ATCC 51888 inositol monophosphatase YP_003756569.1 2508732 D 582899 CDS YP_003756570.1 300023959 9388359 2509638..2510702 1 NC_014313.1 KEGG: oca:OCAR_7317 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel family 2510702 9388359 Hden_2452 Hyphomicrobium denitrificans ATCC 51888 MotA/TolQ/ExbB proton channel family YP_003756570.1 2509638 D 582899 CDS YP_003756571.1 300023960 9388360 2510707..2511735 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: oca:OCAR_7318 hypothetical protein; OmpA/MotB domain-containing protein 2511735 9388360 Hden_2453 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003756571.1 2510707 D 582899 CDS YP_003756572.1 300023961 9388361 complement(2511954..2513771) 1 NC_014313.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: rhi:NGR_c28180 ABC transporter ATP-binding protein, ATPase; SMART: ATPase AAA; lipid A ABC exporter family, fused ATPase and inner membrane subunits 2513771 9388361 Hden_2454 Hyphomicrobium denitrificans ATCC 51888 lipid A ABC exporter family, fused ATPase and inner membrane subunits YP_003756572.1 2511954 R 582899 CDS YP_003756573.1 300023962 9388362 2514037..2514261 1 NC_014313.1 KEGG: mes:Meso_3190 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 2514261 9388362 Hden_2455 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L31 YP_003756573.1 2514037 D 582899 CDS YP_003756574.1 300023963 9388363 complement(2514348..2514896) 1 NC_014313.1 PFAM: protein of unknown function DUF1465; KEGG: avi:Avi_3663 hypothetical protein; hypothetical protein 2514896 9388363 Hden_2456 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756574.1 2514348 R 582899 CDS YP_003756575.1 300023964 9388364 complement(2515271..2515462) 1 NC_014313.1 PFAM: protein of unknown function DUF1192; KEGG: mag:amb2678 hypothetical protein; hypothetical protein 2515462 9388364 Hden_2457 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756575.1 2515271 R 582899 CDS YP_003756576.1 300023965 9388365 complement(2515444..2515584) 1 NC_014313.1 hypothetical protein 2515584 9388365 Hden_2458 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756576.1 2515444 R 582899 CDS YP_003756577.1 300023966 9388366 2515603..2516613 1 NC_014313.1 KEGG: rru:Rru_A1056 zinc-containing alcohol dehydrogenase superfamily protein; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; NAD(P)H quinone oxidoreductase, PIG3 family 2516613 9388366 Hden_2459 Hyphomicrobium denitrificans ATCC 51888 NAD(P)H quinone oxidoreductase, PIG3 family YP_003756577.1 2515603 D 582899 CDS YP_003756578.1 300023967 9388367 complement(2516896..2517750) 1 NC_014313.1 KEGG: met:M446_2225 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: haloacid dehalogenase; HAD-superfamily hydrolase 2517750 9388367 Hden_2460 Hyphomicrobium denitrificans ATCC 51888 HAD-superfamily hydrolase YP_003756578.1 2516896 R 582899 CDS YP_003756579.1 300023968 9388368 complement(2517884..2519947) 1 NC_014313.1 KEGG: rpt:Rpal_1371 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase 2519947 9388368 Hden_2461 Hyphomicrobium denitrificans ATCC 51888 diguanylate phosphodiesterase YP_003756579.1 2517884 R 582899 CDS YP_003756580.1 300023969 9388369 2520273..2521019 1 NC_014313.1 KEGG: eat:EAT1b_2885 3-oxoacyl-(acyl-carrier-protein) reductase; hypothetical protein 2521019 9388369 Hden_2462 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756580.1 2520273 D 582899 CDS YP_003756581.1 300023970 9388370 2521085..2522020 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azl:AZL_a00120 transcriptional regulator; LysR family transcriptional regulator 2522020 9388370 Hden_2463 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003756581.1 2521085 D 582899 CDS YP_003756582.1 300023971 9388371 2522198..2522728 1 NC_014313.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: reh:H16_A0640 NAD-dependent formate dehydrogenase gamma subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 2522728 9388371 Hden_2464 Hyphomicrobium denitrificans ATCC 51888 NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_003756582.1 2522198 D 582899 CDS YP_003756583.1 300023972 9388372 2522725..2524290 1 NC_014313.1 KEGG: azl:AZL_a00160 formate dehydrogenase, beta subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; NADH dehydrogenase (quinone) 2524290 9388372 Hden_2465 Hyphomicrobium denitrificans ATCC 51888 NADH dehydrogenase (quinone) YP_003756583.1 2522725 D 582899 CDS YP_003756584.1 300023973 9388373 2524347..2527244 1 NC_014313.1 manually curated; TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: azl:AZL_a00170 formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 2527244 9388373 Hden_2466 Hyphomicrobium denitrificans ATCC 51888 formate dehydrogenase subunit alpha YP_003756584.1 2524347 D 582899 CDS YP_003756585.1 300023974 9388374 2527275..2528093 1 NC_014313.1 KEGG: azl:AZL_a00180 formate dehydrogenase accessory protein; TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; formate dehydrogenase family accessory protein FdhD 2528093 9388374 Hden_2467 Hyphomicrobium denitrificans ATCC 51888 formate dehydrogenase family accessory protein FdhD YP_003756585.1 2527275 D 582899 CDS YP_003756586.1 300023975 9388375 2528135..2528416 1 NC_014313.1 KEGG: met:M446_2356 hypothetical protein; hypothetical protein 2528416 9388375 Hden_2468 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756586.1 2528135 D 582899 CDS YP_003756587.1 300023976 9388376 complement(2528488..2530572) 1 NC_014313.1 TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; elongation factor G domain protein; KEGG: rpc:RPC_4119 elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain protein; small GTP-binding protein 2530572 9388376 Hden_2469 Hyphomicrobium denitrificans ATCC 51888 small GTP-binding protein YP_003756587.1 2528488 R 582899 CDS YP_003756588.1 300023977 9388378 complement(2531287..2532489) 1 NC_014313.1 PFAM: aminotransferase class I and II; KEGG: pla:Plav_2300 aspartate aminotransferase; class I and II aminotransferase 2532489 9388378 Hden_2471 Hyphomicrobium denitrificans ATCC 51888 class I and II aminotransferase YP_003756588.1 2531287 R 582899 CDS YP_003756589.1 300023978 9388379 2532811..2533257 1 NC_014313.1 KEGG: svi:Svir_24120 ribonuclease D; hypothetical protein 2533257 9388379 Hden_2472 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756589.1 2532811 D 582899 CDS YP_003756590.1 300023979 9388380 2533355..2533840 1 NC_014313.1 KEGG: cre:CHLREDRAFT_181050 hypothetical protein; hypothetical protein 2533840 9388380 Hden_2473 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756590.1 2533355 D 582899 CDS YP_003756591.1 300023980 9388381 complement(2533880..2534620) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr0293 carbonyl reductase; short-chain dehydrogenase/reductase SDR 2534620 9388381 Hden_2474 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756591.1 2533880 R 582899 CDS YP_003756592.1 300023981 9388382 complement(2534722..2534958) 1 NC_014313.1 KEGG: nha:Nham_3496 hypothetical protein; hypothetical protein 2534958 9388382 Hden_2475 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756592.1 2534722 R 582899 CDS YP_003756593.1 300023982 9388383 2535463..2538168 1 NC_014313.1 TIGRFAM: excinuclease ABC subunit B; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; KEGG: oca:OCAR_7183 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase; excinuclease ABC subunit B 2538168 9388383 Hden_2476 Hyphomicrobium denitrificans ATCC 51888 excinuclease ABC subunit B YP_003756593.1 2535463 D 582899 CDS YP_003756594.1 300023983 9388384 2538273..2538851 1 NC_014313.1 KEGG: mno:Mnod_1815 intracellular protease PfpI family; TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; intracellular protease PfpI family 2538851 9388384 Hden_2477 Hyphomicrobium denitrificans ATCC 51888 intracellular protease PfpI family YP_003756594.1 2538273 D 582899 CDS YP_003756595.1 300023984 9388385 complement(2538863..2539171) 1 NC_014313.1 KEGG: tmz:Tmz1t_3431 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; hypothetical protein 2539171 9388385 Hden_2478 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756595.1 2538863 R 582899 CDS YP_003756596.1 300023985 9388386 2539405..2540094 1 NC_014313.1 PFAM: phosphoglycerate mutase; KEGG: rso:RSc3377 hypothetical protein; phosphoglycerate mutase 2540094 9388386 Hden_2479 Hyphomicrobium denitrificans ATCC 51888 phosphoglycerate mutase YP_003756596.1 2539405 D 582899 CDS YP_003756597.1 300023986 9388387 complement(2540116..2540619) 1 NC_014313.1 KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein 2540619 9388387 Hden_2480 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756597.1 2540116 R 582899 CDS YP_003756598.1 300023987 9388388 2541069..2541581 1 NC_014313.1 KEGG: rpt:Rpal_4266 hypothetical protein; hypothetical protein 2541581 9388388 Hden_2481 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756598.1 2541069 D 582899 CDS YP_003756599.1 300023988 9388389 2541629..2542000 1 NC_014313.1 KEGG: apr:Apre_1555 ribosomal protein L15; hypothetical protein 2542000 9388389 Hden_2482 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756599.1 2541629 D 582899 CDS YP_003756600.1 300023989 9388390 complement(2542105..2542767) 1 NC_014313.1 SMART: beta-lactamase; KEGG: mpo:Mpop_2508 beta-lactamase; beta-lactamase 2542767 9388390 Hden_2483 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003756600.1 2542105 R 582899 CDS YP_003756601.1 300023990 9388391 2542994..2544481 1 NC_014313.1 KEGG: oca:OCAR_7002 hypothetical protein; hypothetical protein 2544481 9388391 Hden_2484 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756601.1 2542994 D 582899 CDS YP_003756602.1 300023991 9388392 complement(2544433..2544537) 1 NC_014313.1 hypothetical protein 2544537 9388392 Hden_2485 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756602.1 2544433 R 582899 CDS YP_003756603.1 300023992 9388393 complement(2544589..2545287) 1 NC_014313.1 KEGG: mlo:mll2816 two-component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 2545287 9388393 Hden_2486 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003756603.1 2544589 R 582899 CDS YP_003756604.1 300023993 9388394 2545964..2546344 1 NC_014313.1 KEGG: oca:OCAR_7109 flagellar export protein FliJ; flagellar export protein FliJ 2546344 9388394 Hden_2487 Hyphomicrobium denitrificans ATCC 51888 flagellar export protein FliJ YP_003756604.1 2545964 D 582899 CDS YP_003756605.1 300023994 9388395 2546555..2547268 1 NC_014313.1 KEGG: cur:cur_1817 Fe-S oxidoreductase; hypothetical protein 2547268 9388395 Hden_2488 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756605.1 2546555 D 582899 CDS YP_003756606.1 300023995 9388396 complement(2547352..2547630) 1 NC_014313.1 PFAM: protein of unknown function DUF1153; KEGG: azc:AZC_1033 hypothetical protein; hypothetical protein 2547630 9388396 Hden_2489 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756606.1 2547352 R 582899 CDS YP_003756607.1 300023996 9388397 2548038..2549231 1 NC_014313.1 KEGG: nwi:Nwi_0603 tRNA-specific 2-thiouridylase MnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2549231 9388397 Hden_2490 Hyphomicrobium denitrificans ATCC 51888 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_003756607.1 2548038 D 582899 CDS YP_003756608.1 300023997 9388398 2549266..2550000 1 NC_014313.1 KEGG: pla:Plav_2189 phosphatidylethanolamine N-methyltransferase; PFAM: methyltransferase type 11; phosphatidylethanolamine N-methyltransferase 2550000 9388398 Hden_2491 Hyphomicrobium denitrificans ATCC 51888 phosphatidylethanolamine N-methyltransferase YP_003756608.1 2549266 D 582899 CDS YP_003756609.1 300023998 9388400 complement(2550371..2550790) 1 NC_014313.1 PFAM: class I peptide chain release factor; KEGG: rce:RC1_1710 peptidyl-tRNA hydrolase domain; class I peptide chain release factor 2550790 9388400 Hden_2492 Hyphomicrobium denitrificans ATCC 51888 class I peptide chain release factor YP_003756609.1 2550371 R 582899 CDS YP_003756610.1 300023999 9388401 complement(2550883..2552499) 1 NC_014313.1 PFAM: amine oxidase; KEGG: nar:Saro_1673 FAD dependent oxidoreductase; amine oxidase 2552499 9388401 Hden_2493 Hyphomicrobium denitrificans ATCC 51888 amine oxidase YP_003756610.1 2550883 R 582899 CDS YP_003756611.1 300024000 9388402 2552759..2553010 1 NC_014313.1 KEGG: sgr:SGR_2594 integral membrane ion antiporter; integral membrane ion antiporter 2553010 9388402 Hden_2494 Hyphomicrobium denitrificans ATCC 51888 integral membrane ion antiporter YP_003756611.1 2552759 D 582899 CDS YP_003756612.1 300024001 9388403 complement(2553036..2553314) 1 NC_014313.1 KEGG: cre:CHLREDRAFT_142105 phosphoglycolate phosphatase; hypothetical protein 2553314 9388403 Hden_2495 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756612.1 2553036 R 582899 CDS YP_003756613.1 300024002 9388404 complement(2553403..2554299) 1 NC_014313.1 KEGG: ccs:CCNA_03024 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase 2554299 9388404 Hden_2496 Hyphomicrobium denitrificans ATCC 51888 branched-chain amino acid aminotransferase YP_003756613.1 2553403 R 582899 CDS YP_003756614.1 300024003 9388405 2554503..2555084 1 NC_014313.1 KEGG: azc:AZC_3973 regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 2555084 9388405 Hden_2497 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003756614.1 2554503 D 582899 CDS YP_003756615.1 300024004 9388406 2555096..2555797 1 NC_014313.1 KEGG: mes:Meso_2142 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 2555797 9388406 Hden_2498 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003756615.1 2555096 D 582899 CDS YP_003756616.1 300024005 9388407 2555847..2557262 1 NC_014313.1 KEGG: rpe:RPE_1426 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2557262 9388407 Hden_2499 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003756616.1 2555847 D 582899 CDS YP_003756617.1 300024006 9388408 complement(2557500..2558327) 1 NC_014313.1 TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: azc:AZC_3979 delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2558327 9388408 Hden_2500 Hyphomicrobium denitrificans ATCC 51888 pyrroline-5-carboxylate reductase YP_003756617.1 2557500 R 582899 CDS YP_003756618.1 300024007 9388409 complement(2558361..2558858) 1 NC_014313.1 PFAM: protein of unknown function DUF1790; KEGG: mno:Mnod_1376 protein of unknown function DUF1790; hypothetical protein 2558858 9388409 Hden_2501 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756618.1 2558361 R 582899 CDS YP_003756619.1 300024008 9388410 complement(2559124..2559387) 1 NC_014313.1 PFAM: protein of unknown function DUF526; KEGG: ret:RHE_CH03017 hypothetical protein; hypothetical protein 2559387 9388410 Hden_2502 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756619.1 2559124 R 582899 CDS YP_003756620.1 300024009 9388411 complement(2559405..2559563) 1 NC_014313.1 hypothetical protein 2559563 9388411 Hden_2503 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756620.1 2559405 R 582899 CDS YP_003756621.1 300024010 9388412 2559566..2560405 1 NC_014313.1 KEGG: rhi:NGR_c22920 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 2560405 9388412 Hden_2504 Hyphomicrobium denitrificans ATCC 51888 prolipoprotein diacylglyceryl transferase YP_003756621.1 2559566 D 582899 CDS YP_003756622.1 300024011 9388413 2560402..2561541 1 NC_014313.1 PFAM: protein of unknown function DUF185; KEGG: msl:Msil_1134 protein of unknown function DUF185; hypothetical protein 2561541 9388413 Hden_2505 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756622.1 2560402 D 582899 CDS YP_003756623.1 300024012 9388414 2561558..2562331 1 NC_014313.1 PFAM: protein of unknown function DUF152; KEGG: pzu:PHZ_c2860 hypothetical protein; hypothetical protein 2562331 9388414 Hden_2506 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756623.1 2561558 D 582899 CDS YP_003756624.1 300024013 9388415 2562534..2563580 1 NC_014313.1 KEGG: bov:BOV_1481 lipoprotein; hypothetical protein 2563580 9388415 Hden_2507 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756624.1 2562534 D 582899 CDS YP_003756625.1 300024014 9388416 2563749..2564684 1 NC_014313.1 PFAM: phosphoribosyltransferase; manually curated; KEGG: pla:Plav_2258 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase 2564684 9388416 Hden_2508 Hyphomicrobium denitrificans ATCC 51888 ribose-phosphate pyrophosphokinase YP_003756625.1 2563749 D 582899 CDS YP_003756626.1 300024015 9388417 2564807..2565736 1 NC_014313.1 KEGG: mpt:Mpe_A3383 hypothetical protein; hypothetical protein 2565736 9388417 Hden_2509 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756626.1 2564807 D 582899 CDS YP_003756627.1 300024016 9388418 2565842..2566846 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bid:Bind_1144 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 2566846 9388418 Hden_2510 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003756627.1 2565842 D 582899 CDS YP_003756628.1 300024017 9388419 complement(2566879..2567292) 1 NC_014313.1 KEGG: bmr:BMI_II1131 Fur family transcriptional regulator; Fur family transcriptional regulator 2567292 9388419 Hden_2511 Hyphomicrobium denitrificans ATCC 51888 Fur family transcriptional regulator YP_003756628.1 2566879 R 582899 CDS YP_003756629.1 300024018 9388420 2567576..2568304 1 NC_014313.1 KEGG: rpe:RPE_1437 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25-like; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 2568304 9388420 Hden_2512 Hyphomicrobium denitrificans ATCC 51888 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_003756629.1 2567576 D 582899 CDS YP_003756630.1 300024019 9388421 2568421..2569164 1 NC_014313.1 TIGRFAM: peptidyl-tRNA hydrolase; KEGG: sil:SPO0811 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 2569164 9388421 Hden_2513 Hyphomicrobium denitrificans ATCC 51888 peptidyl-tRNA hydrolase YP_003756630.1 2568421 D 582899 CDS YP_003756631.1 300024020 9388422 2569208..2569942 1 NC_014313.1 KEGG: ter:Tery_3321 hypothetical protein; hypothetical protein 2569942 9388422 Hden_2514 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756631.1 2569208 D 582899 CDS YP_003756632.1 300024021 9388423 2570057..2571154 1 NC_014313.1 KEGG: pla:Plav_2255 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 2571154 9388423 Hden_2515 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein YchF YP_003756632.1 2570057 D 582899 CDS YP_003756633.1 300024022 9388424 2571178..2571420 1 NC_014313.1 KEGG: met:M446_4514 hypothetical protein; hypothetical protein 2571420 9388424 Hden_2516 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756633.1 2571178 D 582899 CDS YP_003756634.1 300024023 9388425 complement(2571434..2571739) 1 NC_014313.1 KEGG: oca:OCAR_7581 hypothetical protein; hypothetical protein 2571739 9388425 Hden_2517 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756634.1 2571434 R 582899 CDS YP_003756635.1 300024024 9388426 complement(2571897..2573372) 1 NC_014313.1 KEGG: rce:RC1_3548 catalase; PFAM: catalase related subgroup; catalase domain protein; catalase 2573372 9388426 Hden_2518 Hyphomicrobium denitrificans ATCC 51888 catalase YP_003756635.1 2571897 R 582899 CDS YP_003756636.1 300024025 9388427 complement(2573522..2574196) 1 NC_014313.1 PFAM: class II aldolase/adducin family protein; KEGG: pla:Plav_2248 class II aldolase/adducin family protein; class II aldolase/adducin family protein 2574196 9388427 Hden_2519 Hyphomicrobium denitrificans ATCC 51888 class II aldolase/adducin family protein YP_003756636.1 2573522 R 582899 CDS YP_003756637.1 300024026 9388428 complement(2574193..2575293) 1 NC_014313.1 TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: pla:Plav_2247 eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2575293 9388428 Hden_2520 Hyphomicrobium denitrificans ATCC 51888 translation initiation factor, aIF-2BI family YP_003756637.1 2574193 R 582899 CDS YP_003756638.1 300024027 9388429 complement(2575283..2576002) 1 NC_014313.1 KEGG: pfl:PFL_3106 BioH protein; BioH protein 2576002 9388429 Hden_2521 Hyphomicrobium denitrificans ATCC 51888 BioH protein YP_003756638.1 2575283 R 582899 CDS YP_003756639.1 300024028 9388430 complement(2575999..2576220) 1 NC_014313.1 KEGG: sen:SACE_1043 hypothetical protein; hypothetical protein 2576220 9388430 Hden_2522 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756639.1 2575999 R 582899 CDS YP_003756640.1 300024029 9388431 complement(2576229..2576759) 1 NC_014313.1 KEGG: mmr:Mmar10_0743 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase 2576759 9388431 Hden_2523 Hyphomicrobium denitrificans ATCC 51888 adenine phosphoribosyltransferase YP_003756640.1 2576229 R 582899 CDS YP_003756641.1 300024030 9388432 2576890..2577321 1 NC_014313.1 KEGG: bpd:BURPS668_A2971 FHA domain-containing protein; FHA domain-containing protein 2577321 9388432 Hden_2524 Hyphomicrobium denitrificans ATCC 51888 FHA domain-containing protein YP_003756641.1 2576890 D 582899 CDS YP_003756642.1 300024031 9388433 complement(2577419..2578312) 1 NC_014313.1 KEGG: bbt:BBta_0647 5'-methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1; methylthioadenosine phosphorylase 2578312 9388433 Hden_2525 Hyphomicrobium denitrificans ATCC 51888 methylthioadenosine phosphorylase YP_003756642.1 2577419 R 582899 CDS YP_003756643.1 300024032 9388434 complement(2578397..2579260) 1 NC_014313.1 PFAM: cytochrome C1; KEGG: azc:AZC_3499 cytochrome b/c1 precursor; cytochrome C1 2579260 9388434 Hden_2526 Hyphomicrobium denitrificans ATCC 51888 cytochrome C1 YP_003756643.1 2578397 R 582899 CDS YP_003756644.1 300024033 9388435 complement(2579275..2580588) 1 NC_014313.1 PFAM: cytochrome b/b6 domain; KEGG: bid:Bind_0155 cytochrome b/b6 domain-containing protein; cytochrome b/b6 domain-containing protein 2580588 9388435 Hden_2527 Hyphomicrobium denitrificans ATCC 51888 cytochrome b/b6 domain-containing protein YP_003756644.1 2579275 R 582899 CDS YP_003756645.1 300024034 9388436 complement(2580600..2581172) 1 NC_014313.1 TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; KEGG: rlg:Rleg_3042 ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome C reductase, iron-sulfur subunit 2581172 9388436 Hden_2528 Hyphomicrobium denitrificans ATCC 51888 ubiquinol-cytochrome C reductase, iron-sulfur subunit YP_003756645.1 2580600 R 582899 CDS YP_003756646.1 300024035 9388437 2581424..2581900 1 NC_014313.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: met:M446_6224 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2581900 9388437 Hden_2529 Hyphomicrobium denitrificans ATCC 51888 tRNA/rRNA methyltransferase SpoU YP_003756646.1 2581424 D 582899 CDS YP_003756647.1 300024036 9388438 2581949..2582641 1 NC_014313.1 KEGG: sil:SPO2852 CzcN domain-containing protein; CzcN domain-containing protein 2582641 9388438 Hden_2530 Hyphomicrobium denitrificans ATCC 51888 CzcN domain-containing protein YP_003756647.1 2581949 D 582899 CDS YP_003756648.1 300024037 9388439 complement(2582655..2584532) 1 NC_014313.1 KEGG: pap:PSPA7_1898 ATP-binding/permease fusion ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2584532 9388439 Hden_2531 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756648.1 2582655 R 582899 CDS YP_003756649.1 300024038 9388440 2584675..2585583 1 NC_014313.1 KEGG: oan:Oant_1616 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2585583 9388440 Hden_2532 Hyphomicrobium denitrificans ATCC 51888 coproporphyrinogen oxidase YP_003756649.1 2584675 D 582899 CDS YP_003756650.1 300024039 9388441 2585814..2586989 1 NC_014313.1 PFAM: protein of unknown function DUF2235; KEGG: gob:Gobs_1208 protein of unknown function DUF2235; hypothetical protein 2586989 9388441 Hden_2533 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756650.1 2585814 D 582899 CDS YP_003756651.1 300024040 9388442 2587142..2588212 1 NC_014313.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bph:Bphy_4808 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2588212 9388442 Hden_2534 Hyphomicrobium denitrificans ATCC 51888 NADH:flavin oxidoreductase/NADH oxidase YP_003756651.1 2587142 D 582899 CDS YP_003756652.1 300024041 9388443 complement(2588241..2589473) 1 NC_014313.1 KEGG: nwi:Nwi_0278 hypothetical protein; hypothetical protein 2589473 9388443 Hden_2535 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756652.1 2588241 R 582899 CDS YP_003756653.1 300024042 9388444 2589575..2590249 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: rpe:RPE_0942 NUDIX hydrolase; NUDIX hydrolase 2590249 9388444 Hden_2536 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003756653.1 2589575 D 582899 CDS YP_003756654.1 300024043 9388445 2590246..2590542 1 NC_014313.1 KEGG: rce:RC1_3418 hypothetical protein; hypothetical protein 2590542 9388445 Hden_2537 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756654.1 2590246 D 582899 CDS YP_003756655.1 300024044 9388446 2590546..2591802 1 NC_014313.1 PFAM: polynucleotide adenylyltransferase region; KEGG: rpb:RPB_1196 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase region 2591802 9388446 Hden_2538 Hyphomicrobium denitrificans ATCC 51888 polynucleotide adenylyltransferase region YP_003756655.1 2590546 D 582899 CDS YP_003756656.1 300024045 9388447 2591895..2592128 1 NC_014313.1 KEGG: cin:100179124 similar to transmembrane protein 62; hypothetical protein 2592128 9388447 Hden_2539 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756656.1 2591895 D 582899 CDS YP_003756657.1 300024046 9388448 2592257..2593069 1 NC_014313.1 PFAM: metallophosphoesterase; KEGG: met:M446_4942 metallophosphoesterase; metallophosphoesterase 2593069 9388448 Hden_2540 Hyphomicrobium denitrificans ATCC 51888 metallophosphoesterase YP_003756657.1 2592257 D 582899 CDS YP_003756658.1 300024047 9388449 2593114..2594358 1 NC_014313.1 KEGG: oan:Oant_1728 hypothetical protein; hypothetical protein 2594358 9388449 Hden_2541 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756658.1 2593114 D 582899 CDS YP_003756659.1 300024048 9388450 2594369..2595013 1 NC_014313.1 PFAM: methyltransferase type 11; KEGG: bid:Bind_3050 methyltransferase type 12; type 11 methyltransferase 2595013 9388450 Hden_2542 Hyphomicrobium denitrificans ATCC 51888 type 11 methyltransferase YP_003756659.1 2594369 D 582899 CDS YP_003756660.1 300024049 9388451 complement(2595037..2595219) 1 NC_014313.1 KEGG: bja:bsr4834 hypothetical protein; hypothetical protein 2595219 9388451 Hden_2543 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756660.1 2595037 R 582899 CDS YP_003756661.1 300024050 9388452 complement(2595399..2596250) 1 NC_014313.1 KEGG: mbr:MONBRDRAFT_29712 hypothetical protein; hypothetical protein 2596250 9388452 Hden_2544 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756661.1 2595399 R 582899 CDS YP_003756662.1 300024051 9388453 2596590..2597027 1 NC_014313.1 KEGG: noc:Noc_2920 hypothetical protein; hypothetical protein 2597027 9388453 Hden_2545 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756662.1 2596590 D 582899 CDS YP_003756663.1 300024052 9388454 complement(2597194..2598840) 1 NC_014313.1 KEGG: sme:SM_b21566 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; chaperonin GroEL 2598840 9388454 Hden_2546 Hyphomicrobium denitrificans ATCC 51888 chaperonin GroEL YP_003756663.1 2597194 R 582899 CDS YP_003756664.1 300024053 9388455 complement(2598886..2599200) 1 NC_014313.1 KEGG: bbt:BBta_5284 co-chaperonin GroES; PFAM: chaperonin Cpn10; SMART: chaperonin Cpn10; chaperonin Cpn10 2599200 9388455 Hden_2547 Hyphomicrobium denitrificans ATCC 51888 chaperonin Cpn10 YP_003756664.1 2598886 R 582899 CDS YP_003756665.1 300024054 9388456 complement(2599611..2599958) 1 NC_014313.1 KEGG: rsq:Rsph17025_4162 hypothetical protein; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS 2599958 9388456 Hden_2548 Hyphomicrobium denitrificans ATCC 51888 histone family protein nucleoid-structuring protein H-NS YP_003756665.1 2599611 R 582899 CDS YP_003756666.1 300024055 9388457 2600424..2601014 1 NC_014313.1 KEGG: bmr:BMI_I565 superoxide dismutase, Fe-Mn family; PFAM: Manganese/iron superoxide dismutase-like; superoxide dismutase 2601014 9388457 Hden_2549 Hyphomicrobium denitrificans ATCC 51888 superoxide dismutase YP_003756666.1 2600424 D 582899 CDS YP_003756667.1 300024056 9388458 2601101..2602936 1 NC_014313.1 KEGG: jan:Jann_0922 cyclic nucleotide-binding domain-containing protein; PFAM: patatin; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein 2602936 9388458 Hden_2550 Hyphomicrobium denitrificans ATCC 51888 cyclic nucleotide-binding protein YP_003756667.1 2601101 D 582899 CDS YP_003756668.1 300024057 9388459 2603074..2604423 1 NC_014313.1 PFAM: patatin; KEGG: rpc:RPC_3027 patatin; patatin 2604423 9388459 Hden_2551 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003756668.1 2603074 D 582899 CDS YP_003756669.1 300024058 9388460 complement(2604436..2604732) 1 NC_014313.1 KEGG: kpu:pK2044_01080 hypothetical protein; hypothetical protein 2604732 9388460 Hden_2552 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756669.1 2604436 R 582899 CDS YP_003756670.1 300024059 9388461 complement(2604857..2606293) 1 NC_014313.1 PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: mpo:Mpop_4924 protein of unknown function DUF853 NPT hydrolase; hypothetical protein 2606293 9388461 Hden_2553 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756670.1 2604857 R 582899 CDS YP_003756671.1 300024060 9388462 2606517..2608397 1 NC_014313.1 KEGG: rru:Rru_A2480 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 2608397 9388462 Hden_2554 Hyphomicrobium denitrificans ATCC 51888 methylmalonyl-CoA mutase YP_003756671.1 2606517 D 582899 CDS YP_003756672.1 300024061 9388463 2608450..2609850 1 NC_014313.1 PFAM: Cl- channel voltage-gated family protein; KEGG: azc:AZC_1474 chloride channel protein; Cl- channel voltage-gated family protein 2609850 9388463 Hden_2555 Hyphomicrobium denitrificans ATCC 51888 Cl- channel voltage-gated family protein YP_003756672.1 2608450 D 582899 CDS YP_003756673.1 300024062 9388464 complement(2609839..2610492) 1 NC_014313.1 KEGG: aau:AAur_2369 ribonuclease Rne/Rng family protein; hypothetical protein 2610492 9388464 Hden_2556 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756673.1 2609839 R 582899 CDS YP_003756674.1 300024063 9388465 complement(2610774..2610974) 1 NC_014313.1 KEGG: dan:Dana_GF21393 GF21393 gene product from transcript GF21393-RA; hypothetical protein 2610974 9388465 Hden_2557 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756674.1 2610774 R 582899 CDS YP_003756675.1 300024064 9388466 complement(2611221..2611496) 1 NC_014313.1 KEGG: sus:acid_7895 hypothetical protein; hypothetical protein 2611496 9388466 Hden_2558 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756675.1 2611221 R 582899 CDS YP_003756676.1 300024065 9388467 complement(2611572..2612510) 1 NC_014313.1 PFAM: protein of unknown function DUF817; KEGG: mea:Mex_1p5253 hypothetical protein; hypothetical protein 2612510 9388467 Hden_2559 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756676.1 2611572 R 582899 CDS YP_003756677.1 300024066 9388468 2612714..2614888 1 NC_014313.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: mno:Mnod_4573 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase, large subunit 2614888 9388468 Hden_2560 Hyphomicrobium denitrificans ATCC 51888 methylmalonyl-CoA mutase, large subunit YP_003756677.1 2612714 D 582899 CDS YP_003756678.1 300024067 9388469 complement(2614953..2616860) 1 NC_014313.1 manually curated; PFAM: DEAD/DEAH box helicase domain protein; helicase; KEGG: pla:Plav_2485 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase 2616860 9388469 Hden_2561 Hyphomicrobium denitrificans ATCC 51888 DEAD/DEAH box helicase YP_003756678.1 2614953 R 582899 CDS YP_003756679.1 300024068 9388470 2617152..2617610 1 NC_014313.1 KEGG: ddr:Deide_22680 hypothetical protein; hypothetical protein 2617610 9388470 Hden_2562 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756679.1 2617152 D 582899 CDS YP_003756680.1 300024069 9388471 complement(2617620..2618561) 1 NC_014313.1 KEGG: rpt:Rpal_4151 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 2618561 9388471 Hden_2563 Hyphomicrobium denitrificans ATCC 51888 proline iminopeptidase YP_003756680.1 2617620 R 582899 CDS YP_003756681.1 300024070 9388472 2618879..2619307 1 NC_014313.1 KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein 2619307 9388472 Hden_2564 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756681.1 2618879 D 582899 CDS YP_003756682.1 300024071 9388473 complement(2619425..2620090) 1 NC_014313.1 PFAM: protein of unknown function DUF1520; KEGG: nha:Nham_2714 hypothetical protein; hypothetical protein 2620090 9388473 Hden_2565 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756682.1 2619425 R 582899 CDS YP_003756683.1 300024072 9388474 complement(2620256..2620681) 1 NC_014313.1 KEGG: cre:CHLREDRAFT_174693 hypothetical protein; hypothetical protein 2620681 9388474 Hden_2566 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756683.1 2620256 R 582899 CDS YP_003756684.1 300024073 9388475 complement(2620840..2622462) 1 NC_014313.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: pph:Ppha_1468 protein of unknown function DUF900 hydrolase family protein; hypothetical protein 2622462 9388475 Hden_2567 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756684.1 2620840 R 582899 CDS YP_003756685.1 300024074 9388476 2622669..2623670 1 NC_014313.1 KEGG: bbt:BBta_3019 arginine/ornithine transporter ATPase; TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; LAO/AO transporter ATPase 2623670 9388476 Hden_2568 Hyphomicrobium denitrificans ATCC 51888 LAO/AO transporter ATPase YP_003756685.1 2622669 D 582899 CDS YP_003756686.1 300024075 9388477 2623803..2624363 1 NC_014313.1 PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: xau:Xaut_2489 peptidase C15 pyroglutamyl peptidase I; peptidase C15 pyroglutamyl peptidase I 2624363 9388477 Hden_2569 Hyphomicrobium denitrificans ATCC 51888 peptidase C15 pyroglutamyl peptidase I YP_003756686.1 2623803 D 582899 CDS YP_003756687.1 300024076 9388478 2624421..2625776 1 NC_014313.1 KEGG: nha:Nham_2646 nitrous oxidase accessory protein; nitrous oxidase accessory protein 2625776 9388478 Hden_2570 Hyphomicrobium denitrificans ATCC 51888 nitrous oxidase accessory protein YP_003756687.1 2624421 D 582899 CDS YP_003756688.1 300024077 9388479 2626107..2628293 1 NC_014313.1 TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase; HRDC domain protein; KEGG: tgr:Tgr7_1931 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein; ATP-dependent DNA helicase RecQ 2628293 9388479 Hden_2571 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent DNA helicase RecQ YP_003756688.1 2626107 D 582899 CDS YP_003756689.1 300024078 9388480 complement(2628265..2628597) 1 NC_014313.1 KEGG: met:M446_4527 type IV pilus assembly PilZ; hypothetical protein 2628597 9388480 Hden_2572 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756689.1 2628265 R 582899 CDS YP_003756690.1 300024079 9388481 complement(2628718..2629425) 1 NC_014313.1 TIGRFAM: ATP phosphoribosyltransferase; KEGG: bja:blr7525 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 2629425 9388481 Hden_2573 Hyphomicrobium denitrificans ATCC 51888 ATP phosphoribosyltransferase YP_003756690.1 2628718 R 582899 CDS YP_003756691.1 300024080 9388482 complement(2629422..2630600) 1 NC_014313.1 PFAM: tRNA synthetase class II (G H P and S); KEGG: pla:Plav_0599 ATP phosphoribosyltransferase regulatory subunit; tRNA synthetase class II (G H P and S) 2630600 9388482 Hden_2574 Hyphomicrobium denitrificans ATCC 51888 tRNA synthetase class II (G H P and S) YP_003756691.1 2629422 R 582899 CDS YP_003756692.1 300024081 9388483 complement(2630746..2632341) 1 NC_014313.1 TIGRFAM: histidyl-tRNA synthetase; KEGG: bra:BRADO6038 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; histidyl-tRNA synthetase 2632341 9388483 Hden_2575 Hyphomicrobium denitrificans ATCC 51888 histidyl-tRNA synthetase YP_003756692.1 2630746 R 582899 CDS YP_003756693.1 300024082 9388484 complement(2632458..2633651) 1 NC_014313.1 KEGG: rpb:RPB_2707 hypothetical protein; hypothetical protein 2633651 9388484 Hden_2576 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756693.1 2632458 R 582899 CDS YP_003756694.1 300024083 9388485 complement(2633814..2634581) 1 NC_014313.1 KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; cobalamin 5'-phosphate synthase 2634581 9388485 Hden_2577 Hyphomicrobium denitrificans ATCC 51888 cobalamin 5'-phosphate synthase YP_003756694.1 2633814 R 582899 CDS YP_003756695.1 300024084 9388486 complement(2634578..2635618) 1 NC_014313.1 TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: rpb:RPB_3282 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase 2635618 9388486 Hden_2578 Hyphomicrobium denitrificans ATCC 51888 nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase YP_003756695.1 2634578 R 582899 CDS YP_003756696.1 300024085 9388487 complement(2635615..2636979) 1 NC_014313.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_1761 hypothetical protein; hypothetical protein 2636979 9388487 Hden_2579 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756696.1 2635615 R 582899 CDS YP_003756697.1 300024086 9388488 complement(2637006..2638184) 1 NC_014313.1 PFAM: FAD linked oxidase; KEGG: mno:Mnod_0677 FAD linked oxidase; FAD linked oxidase 2638184 9388488 Hden_2580 Hyphomicrobium denitrificans ATCC 51888 FAD linked oxidase YP_003756697.1 2637006 R 582899 CDS YP_003756698.1 300024087 9388489 complement(2638244..2639716) 1 NC_014313.1 KEGG: mno:Mnod_4582 FAD linked oxidase domain protein; PFAM: FAD linked oxidase; D-lactate dehydrogenase (cytochrome) 2639716 9388489 Hden_2581 Hyphomicrobium denitrificans ATCC 51888 D-lactate dehydrogenase (cytochrome) YP_003756698.1 2638244 R 582899 CDS YP_003756699.1 300024088 9388490 complement(2640344..2641726) 1 NC_014313.1 TIGRFAM: glutamate/cysteine ligase; KEGG: pla:Plav_0658 glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 2641726 9388490 Hden_2582 Hyphomicrobium denitrificans ATCC 51888 glutamate/cysteine ligase YP_003756699.1 2640344 R 582899 CDS YP_003756700.1 300024089 9388491 complement(2641833..2642579) 1 NC_014313.1 PFAM: protein of unknown function DUF558; KEGG: msl:Msil_2902 protein of unknown function DUF558; hypothetical protein 2642579 9388491 Hden_2583 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756700.1 2641833 R 582899 CDS YP_003756701.1 300024090 9388492 2642694..2643656 1 NC_014313.1 KEGG: pla:Plav_0653 4-hydroxybenzoate polyprenyl transferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyl transferase 2643656 9388492 Hden_2584 Hyphomicrobium denitrificans ATCC 51888 4-hydroxybenzoate polyprenyl transferase YP_003756701.1 2642694 D 582899 CDS YP_003756702.1 300024091 9388493 2643929..2644207 1 NC_014313.1 KEGG: xau:Xaut_1484 hypothetical protein; hypothetical protein 2644207 9388493 Hden_2585 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756702.1 2643929 D 582899 CDS YP_003756703.1 300024092 9388494 complement(2644235..2644972) 1 NC_014313.1 PFAM: protein of unknown function DUF442; KEGG: met:M446_2662 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase 2644972 9388494 Hden_2586 Hyphomicrobium denitrificans ATCC 51888 protein tyrosine/serine phosphatase YP_003756703.1 2644235 R 582899 CDS YP_003756704.1 300024093 9388495 2645175..2647178 1 NC_014313.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; glycosyl transferase group 1; protein of unknown function DUF374; KEGG: bra:BRADO6096 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 2647178 9388495 Hden_2587 Hyphomicrobium denitrificans ATCC 51888 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_003756704.1 2645175 D 582899 CDS YP_003756705.1 300024094 9388496 2647182..2648210 1 NC_014313.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: mrd:Mrad2831_0888 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2648210 9388496 Hden_2588 Hyphomicrobium denitrificans ATCC 51888 tetraacyldisaccharide 4'-kinase YP_003756705.1 2647182 D 582899 CDS YP_003756706.1 300024095 9388497 complement(2648207..2648443) 1 NC_014313.1 PFAM: protein of unknown function DUF2093; KEGG: mes:Meso_0440 hypothetical protein; hypothetical protein 2648443 9388497 Hden_2589 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756706.1 2648207 R 582899 CDS YP_003756707.1 300024096 9388498 complement(2648556..2650022) 1 NC_014313.1 TIGRFAM: exodeoxyribonuclease VII large subunit; KEGG: pla:Plav_0620 exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2650022 9388498 Hden_2590 Hyphomicrobium denitrificans ATCC 51888 exodeoxyribonuclease VII large subunit YP_003756707.1 2648556 R 582899 CDS YP_003756708.1 300024097 9388499 2650091..2651365 1 NC_014313.1 TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: rpe:RPE_4612 phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine/glycine ligase 2651365 9388499 Hden_2591 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylamine/glycine ligase YP_003756708.1 2650091 D 582899 CDS YP_003756709.1 300024098 9388500 2651401..2652402 1 NC_014313.1 PFAM: patatin; KEGG: mlo:mlr8257 hypothetical protein; patatin 2652402 9388500 Hden_2592 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003756709.1 2651401 D 582899 CDS YP_003756710.1 300024099 9388501 complement(2652543..2652980) 1 NC_014313.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mrd:Mrad2831_0072 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase protein 2652980 9388501 Hden_2593 Hyphomicrobium denitrificans ATCC 51888 zinc-binding CMP/dCMP deaminase protein YP_003756710.1 2652543 R 582899 CDS YP_003756711.1 300024100 9388502 2652981..2653889 1 NC_014313.1 KEGG: rpt:Rpal_1356 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 2653889 9388502 Hden_2594 Hyphomicrobium denitrificans ATCC 51888 RNA-binding S4 domain-containing protein YP_003756711.1 2652981 D 582899 CDS YP_003756712.1 300024101 9388503 2653886..2654443 1 NC_014313.1 KEGG: bra:BRADO6080 methyltransferase; TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase; methyltransferase 2654443 9388503 Hden_2595 Hyphomicrobium denitrificans ATCC 51888 methyltransferase YP_003756712.1 2653886 D 582899 CDS YP_003756713.1 300024102 9388504 2654584..2655540 1 NC_014313.1 KEGG: oan:Oant_2228 hypothetical protein; hypothetical protein 2655540 9388504 Hden_2596 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756713.1 2654584 D 582899 CDS YP_003756714.1 300024103 9388505 complement(2655495..2656055) 1 NC_014313.1 PFAM: protein of unknown function DUF2239; KEGG: rso:RS03158 hypothetical protein; hypothetical protein 2656055 9388505 Hden_2597 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756714.1 2655495 R 582899 CDS YP_003756715.1 300024104 9388506 complement(2656130..2657527) 1 NC_014313.1 KEGG: xom:XOO_3698 glucose-galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; glucose/galactose transporter 2657527 9388506 Hden_2598 Hyphomicrobium denitrificans ATCC 51888 glucose/galactose transporter YP_003756715.1 2656130 R 582899 CDS YP_003756716.1 300024105 9388507 2657811..2658146 1 NC_014313.1 KEGG: oan:Oant_3625 hypothetical protein; hypothetical protein 2658146 9388507 Hden_2599 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756716.1 2657811 D 582899 CDS YP_003756717.1 300024106 9388508 2658287..2658778 1 NC_014313.1 KEGG: atc:AGR_C_5028 bacterioferritin (BFR); TIGRFAM: bacterioferritin; PFAM: ferritin; bacterioferritin 2658778 9388508 Hden_2600 Hyphomicrobium denitrificans ATCC 51888 bacterioferritin YP_003756717.1 2658287 D 582899 CDS YP_003756718.1 300024107 9388509 complement(2659025..2660806) 1 NC_014313.1 KEGG: pla:Plav_0293 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein MutL 2660806 9388509 Hden_2601 Hyphomicrobium denitrificans ATCC 51888 DNA mismatch repair protein MutL YP_003756718.1 2659025 R 582899 CDS YP_003756719.1 300024108 9388510 complement(2660837..2662189) 1 NC_014313.1 KEGG: pla:Plav_0292 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 2662189 9388510 Hden_2602 Hyphomicrobium denitrificans ATCC 51888 glucose-6-phosphate isomerase YP_003756719.1 2660837 R 582899 CDS YP_003756720.1 300024109 9388511 complement(2662296..2663708) 1 NC_014313.1 KEGG: azc:AZC_4243 hypothetical protein; PFAM: peptidase M16 domain protein; processing peptidase 2663708 9388511 Hden_2603 Hyphomicrobium denitrificans ATCC 51888 processing peptidase YP_003756720.1 2662296 R 582899 CDS YP_003756721.1 300024110 9388512 complement(2663713..2665128) 1 NC_014313.1 PFAM: peptidase M16 domain protein; KEGG: azc:AZC_4242 protease precursor; peptidase M16 domain-containing protein 2665128 9388512 Hden_2604 Hyphomicrobium denitrificans ATCC 51888 peptidase M16 domain-containing protein YP_003756721.1 2663713 R 582899 CDS YP_003756722.1 300024111 9388513 complement(2665383..2665856) 1 NC_014313.1 KEGG: pzu:PHZ_c3163 hypothetical protein; hypothetical protein 2665856 9388513 Hden_2605 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756722.1 2665383 R 582899 CDS YP_003756723.1 300024112 9388514 complement(2665923..2666447) 1 NC_014313.1 KEGG: pla:Plav_0288 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase 2666447 9388514 Hden_2606 Hyphomicrobium denitrificans ATCC 51888 lipoprotein signal peptidase YP_003756723.1 2665923 R 582899 CDS YP_003756724.1 300024113 9388515 complement(2666812..2669964) 1 NC_014313.1 KEGG: msl:Msil_2860 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 2669964 9388515 Hden_2607 Hyphomicrobium denitrificans ATCC 51888 isoleucyl-tRNA synthetase YP_003756724.1 2666812 R 582899 CDS YP_003756725.1 300024114 9388516 2670164..2670274 1 NC_014313.1 KEGG: dpo:Dpse_GA28430 GA28430 gene product from transcript GA28430-RA; hypothetical protein 2670274 9388516 Hden_2608 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756725.1 2670164 D 582899 CDS YP_003756726.1 300024115 9388517 complement(2670302..2671228) 1 NC_014313.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: rpe:RPE_1410 riboflavin biosynthesis protein RibF; SMART: riboflavin kinase; riboflavin biosynthesis protein RibF 2671228 9388517 Hden_2609 Hyphomicrobium denitrificans ATCC 51888 riboflavin biosynthesis protein RibF YP_003756726.1 2670302 R 582899 CDS YP_003756727.1 300024116 9388518 complement(2671287..2671724) 1 NC_014313.1 PFAM: MaoC domain protein dehydratase; KEGG: mag:amb0831 acyl dehydratase; MaoC domain-containing protein dehydratase 2671724 9388518 Hden_2610 Hyphomicrobium denitrificans ATCC 51888 MaoC domain-containing protein dehydratase YP_003756727.1 2671287 R 582899 CDS YP_003756728.1 300024117 9388519 2671977..2672768 1 NC_014313.1 PFAM: protein of unknown function DUF1013; KEGG: pla:Plav_2090 hypothetical protein; hypothetical protein 2672768 9388519 Hden_2611 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756728.1 2671977 D 582899 CDS YP_003756729.1 300024118 9388520 complement(2672778..2674496) 1 NC_014313.1 PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; KEGG: mno:Mnod_1556 sulfate transporter; sulfate transporter 2674496 9388520 Hden_2612 Hyphomicrobium denitrificans ATCC 51888 sulfate transporter YP_003756729.1 2672778 R 582899 CDS YP_003756730.1 300024119 9388521 complement(2674547..2674849) 1 NC_014313.1 PFAM: hypothetical protein; KEGG: mes:Meso_3386 XRE family transcriptional regulator; XRE family transcriptional regulator 2674849 9388521 Hden_2613 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003756730.1 2674547 R 582899 CDS YP_003756731.1 300024120 9388522 2675176..2676801 1 NC_014313.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr7293 acyl-CoA synthetase; AMP-dependent synthetase and ligase 2676801 9388522 Hden_2614 Hyphomicrobium denitrificans ATCC 51888 AMP-dependent synthetase and ligase YP_003756731.1 2675176 D 582899 CDS YP_003756732.1 300024121 9388523 complement(2676860..2677132) 1 NC_014313.1 KEGG: ppd:Ppro_1279 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; hypothetical protein 2677132 9388523 Hden_2615 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756732.1 2676860 R 582899 CDS YP_003756733.1 300024122 9388524 2677442..2678701 1 NC_014313.1 KEGG: mdi:METDI3470 regulatory protein (nitrile hydratase activator like), GTPase, cobalamin biosynthesis protein (CobW homolog); PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein; cobalamin synthesis protein P47K 2678701 9388524 Hden_2616 Hyphomicrobium denitrificans ATCC 51888 cobalamin synthesis protein P47K YP_003756733.1 2677442 D 582899 CDS YP_003756734.1 300024123 9388525 2678902..2679882 1 NC_014313.1 PFAM: catalase related subgroup; KEGG: bja:blr6251 hypothetical protein; catalase related subgroup 2679882 9388525 Hden_2617 Hyphomicrobium denitrificans ATCC 51888 catalase related subgroup YP_003756734.1 2678902 D 582899 CDS YP_003756735.1 300024124 9388526 complement(2679950..2680456) 1 NC_014313.1 PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_2192 activator of HSP90 ATPase-like protein; activator of Hsp90 ATPase 1 family protein 2680456 9388526 Hden_2618 Hyphomicrobium denitrificans ATCC 51888 activator of Hsp90 ATPase 1 family protein YP_003756735.1 2679950 R 582899 CDS YP_003756736.1 300024125 9388527 complement(2680434..2680790) 1 NC_014313.1 KEGG: oca:OCAR_5411 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 2680790 9388527 Hden_2619 Hyphomicrobium denitrificans ATCC 51888 ArsR family transcriptional regulator YP_003756736.1 2680434 R 582899 CDS YP_003756737.1 300024126 9388528 complement(2681039..2681215) 1 NC_014313.1 PFAM: protein of unknown function DUF465; KEGG: atu:Atu3752 hypothetical protein; hypothetical protein 2681215 9388528 Hden_2620 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756737.1 2681039 R 582899 CDS YP_003756738.1 300024127 9388529 2681468..2681674 1 NC_014313.1 PFAM: protein of unknown function DUF465; KEGG: pla:Plav_2080 hypothetical protein; hypothetical protein 2681674 9388529 Hden_2621 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756738.1 2681468 D 582899 CDS YP_003756739.1 300024128 9388530 2681731..2682750 1 NC_014313.1 SMART: beta-lactamase; KEGG: acr:Acry_1612 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; beta-lactamase 2682750 9388530 Hden_2622 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003756739.1 2681731 D 582899 CDS YP_003756740.1 300024129 9388531 2682753..2684732 1 NC_014313.1 PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: mea:Mex_1p3448 ATP-dependent DNA ligase; ATP dependent DNA ligase 2684732 9388531 Hden_2623 Hyphomicrobium denitrificans ATCC 51888 ATP dependent DNA ligase YP_003756740.1 2682753 D 582899 CDS YP_003756741.1 300024130 9388532 2685137..2685631 1 NC_014313.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: pla:Plav_2072 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 2685631 9388532 Hden_2624 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_003756741.1 2685137 D 582899 CDS YP_003756742.1 300024131 9388533 2685628..2686737 1 NC_014313.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: azc:AZC_2414 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase, ATPase subunit 2686737 9388533 Hden_2625 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_003756742.1 2685628 D 582899 CDS YP_003756743.1 300024132 9388534 2686939..2687331 1 NC_014313.1 KEGG: rpb:RPB_1445 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 2687331 9388534 Hden_2626 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S21 YP_003756743.1 2686939 D 582899 CDS YP_003756744.1 300024133 9388535 complement(2687416..2688234) 1 NC_014313.1 KEGG: rce:RC1_1069 hypothetical protein; hypothetical protein 2688234 9388535 Hden_2627 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756744.1 2687416 R 582899 CDS YP_003756745.1 300024134 9388536 complement(2688299..2689678) 1 NC_014313.1 KEGG: bba:Bd3070 hypothetical protein; hypothetical protein 2689678 9388536 Hden_2628 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756745.1 2688299 R 582899 CDS YP_003756746.1 300024135 9388537 complement(2689798..2691213) 1 NC_014313.1 KEGG: rpb:RPB_1437 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase subunit beta; NAD(P)(+) transhydrogenase 2691213 9388537 Hden_2629 Hyphomicrobium denitrificans ATCC 51888 NAD(P)(+) transhydrogenase YP_003756746.1 2689798 R 582899 CDS YP_003756747.1 300024136 9388538 complement(2691266..2691820) 1 NC_014313.1 KEGG: atc:AGR_L_2917 hypothetical protein; hypothetical protein 2691820 9388538 Hden_2630 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756747.1 2691266 R 582899 CDS YP_003756748.1 300024137 9388539 complement(2691817..2692245) 1 NC_014313.1 KEGG: rle:RL4135 transmembrane NAD(P) transhydrogenase subunit alpha part 2; transmembrane NAD(P) transhydrogenase subunit alpha part 2 2692245 9388539 Hden_2631 Hyphomicrobium denitrificans ATCC 51888 transmembrane NAD(P) transhydrogenase subunit alpha part 2 YP_003756748.1 2691817 R 582899 CDS YP_003756749.1 300024138 9388540 complement(2692350..2693492) 1 NC_014313.1 KEGG: azc:AZC_0430 NAD(P)(+) transhydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase 2693492 9388540 Hden_2632 Hyphomicrobium denitrificans ATCC 51888 NAD(P)(+) transhydrogenase YP_003756749.1 2692350 R 582899 CDS YP_003756750.1 300024139 9388541 complement(2693596..2693739) 1 NC_014313.1 PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: bra:BRADO1195 hypothetical protein; aa3 type cytochrome C oxidase subunit IV 2693739 9388541 Hden_2633 Hyphomicrobium denitrificans ATCC 51888 aa3 type cytochrome C oxidase subunit IV YP_003756750.1 2693596 R 582899 CDS YP_003756751.1 300024140 9388542 complement(2693911..2695821) 1 NC_014313.1 PFAM: K potassium transporter; KEGG: nwi:Nwi_1238 K+ potassium transporter; potassium transporter 2695821 9388542 Hden_2634 Hyphomicrobium denitrificans ATCC 51888 potassium transporter YP_003756751.1 2693911 R 582899 CDS YP_003756752.1 300024141 9388543 complement(2696006..2697853) 1 NC_014313.1 KEGG: mes:Meso_2730 PepF/M3 family oligoendopeptidase; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; oligoendopeptidase, pepF/M3 family 2697853 9388543 Hden_2635 Hyphomicrobium denitrificans ATCC 51888 oligoendopeptidase, pepF/M3 family YP_003756752.1 2696006 R 582899 CDS YP_003756753.1 300024142 9388544 2698203..2699711 1 NC_014313.1 KEGG: pla:Plav_2050 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; Fis family two component sigma-54 specific transcriptional regulator 2699711 9388544 Hden_2636 Hyphomicrobium denitrificans ATCC 51888 Fis family two component sigma-54 specific transcriptional regulator YP_003756753.1 2698203 D 582899 CDS YP_003756754.1 300024143 9388545 2700040..2702004 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2702004 9388545 Hden_2637 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003756754.1 2700040 D 582899 CDS YP_003756755.1 300024144 9388546 2702229..2703773 1 NC_014313.1 PFAM: protein of unknown function DUF882; KEGG: mlo:mll2999 hypothetical protein; hypothetical protein 2703773 9388546 Hden_2638 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756755.1 2702229 D 582899 CDS YP_003756756.1 300024145 9388547 complement(2703810..2704739) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oca:OCAR_4501 hydrogen peroxide-inducible genes activator; LysR family transcriptional regulator 2704739 9388547 Hden_2639 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003756756.1 2703810 R 582899 CDS YP_003756757.1 300024146 9388548 complement(2705040..2705333) 1 NC_014313.1 PFAM: protein of unknown function DUF2312; KEGG: rlt:Rleg2_3293 hypothetical protein; hypothetical protein 2705333 9388548 Hden_2640 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756757.1 2705040 R 582899 CDS YP_003756758.1 300024147 9388549 complement(2705638..2705946) 1 NC_014313.1 PFAM: protein of unknown function DUF1244; KEGG: bja:bll7136 hypothetical protein; hypothetical protein 2705946 9388549 Hden_2641 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756758.1 2705638 R 582899 CDS YP_003756759.1 300024148 9388550 2706130..2707425 1 NC_014313.1 KEGG: oca:OCAR_7443 hydroxypyruvate reductase; PFAM: MOFRL domain protein; hydroxypyruvate reductase 2707425 9388550 Hden_2642 Hyphomicrobium denitrificans ATCC 51888 hydroxypyruvate reductase YP_003756759.1 2706130 D 582899 CDS YP_003756760.1 300024149 9388551 2707495..2707941 1 NC_014313.1 PFAM: protein of unknown function DUF1036; KEGG: mno:Mnod_5963 protein of unknown function DUF1036; hypothetical protein 2707941 9388551 Hden_2643 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756760.1 2707495 D 582899 CDS YP_003756761.1 300024150 9388552 2707938..2709383 1 NC_014313.1 TIGRFAM: pyruvate kinase; KEGG: smd:Smed_2676 pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 2709383 9388552 Hden_2644 Hyphomicrobium denitrificans ATCC 51888 pyruvate kinase YP_003756761.1 2707938 D 582899 CDS YP_003756762.1 300024151 9388553 complement(2709685..2710404) 1 NC_014313.1 KEGG: nwi:Nwi_0984 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein 2710404 9388553 Hden_2645 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756762.1 2709685 R 582899 CDS YP_003756763.1 300024152 9388554 complement(2710489..2710614) 1 NC_014313.1 KEGG: nwi:Nwi_0983 50S ribosomal protein L36; manually curated; TIGRFAM: ribosomal protein L36; 50S ribosomal protein L36 2710614 9388554 Hden_2646 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L36 YP_003756763.1 2710489 R 582899 CDS YP_003756764.1 300024153 9388556 complement(2710798..2711184) 1 NC_014313.1 manually curated; PFAM: response regulator receiver; KEGG: mes:Meso_2750 response regulator receiver protein; SMART: response regulator receiver; response regulator receiver protein 2711184 9388556 Hden_2647 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003756764.1 2710798 R 582899 CDS YP_003756765.1 300024154 9388557 2711450..2712346 1 NC_014313.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mes:Meso_2749 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 2712346 9388557 Hden_2648 Hyphomicrobium denitrificans ATCC 51888 N-formylglutamate amidohydrolase YP_003756765.1 2711450 D 582899 CDS YP_003756766.1 300024155 9388558 2712929..2713702 1 NC_014313.1 KEGG: mno:Mnod_1726 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 2713702 9388558 Hden_2649 Hyphomicrobium denitrificans ATCC 51888 histidinol-phosphate phosphatase YP_003756766.1 2712929 D 582899 CDS YP_003756767.1 300024156 9388559 complement(2713699..2714667) 1 NC_014313.1 PFAM: alpha/beta hydrolase fold; KEGG: mno:Mnod_1727 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein 2714667 9388559 Hden_2650 Hyphomicrobium denitrificans ATCC 51888 alpha/beta hydrolase fold protein YP_003756767.1 2713699 R 582899 CDS YP_003756768.1 300024157 9388560 2714868..2715320 1 NC_014313.1 PFAM: heat shock protein Hsp20; KEGG: azc:AZC_4265 heat shock protein; heat shock protein Hsp20 2715320 9388560 Hden_2651 Hyphomicrobium denitrificans ATCC 51888 heat shock protein Hsp20 YP_003756768.1 2714868 D 582899 CDS YP_003756769.1 300024158 9388561 2715921..2720645 1 NC_014313.1 KEGG: bid:Bind_3031 glutamate synthase (ferredoxin); PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamine amidotransferase class-II; glutamate synthase (ferredoxin) 2720645 9388561 Hden_2652 Hyphomicrobium denitrificans ATCC 51888 glutamate synthase (ferredoxin) YP_003756769.1 2715921 D 582899 CDS YP_003756770.1 300024159 9388562 2720693..2722132 1 NC_014313.1 KEGG: bbt:BBta_1370 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, NADH/NADPH, small subunit 2722132 9388562 Hden_2653 Hyphomicrobium denitrificans ATCC 51888 glutamate synthase, NADH/NADPH, small subunit YP_003756770.1 2720693 D 582899 CDS YP_003756771.1 300024160 9388563 complement(2722149..2722982) 1 NC_014313.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cti:RALTA_B0369 transmembrane protein; hypothetical protein 2722982 9388563 Hden_2654 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756771.1 2722149 R 582899 CDS YP_003756772.1 300024161 9388564 complement(2723057..2724409) 1 NC_014313.1 PFAM: protein of unknown function DUF459; KEGG: msl:Msil_3880 protein of unknown function DUF459; hypothetical protein 2724409 9388564 Hden_2655 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756772.1 2723057 R 582899 CDS YP_003756773.1 300024162 9388565 complement(2724515..2725768) 1 NC_014313.1 KEGG: rpe:RPE_2047 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; lytic murein transglycosylase 2725768 9388565 Hden_2656 Hyphomicrobium denitrificans ATCC 51888 lytic murein transglycosylase YP_003756773.1 2724515 R 582899 CDS YP_003756774.1 300024163 9388566 2726038..2726931 1 NC_014313.1 KEGG: xau:Xaut_0389 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2726931 9388566 Hden_2657 Hyphomicrobium denitrificans ATCC 51888 UTP-glucose-1-phosphate uridylyltransferase YP_003756774.1 2726038 D 582899 CDS YP_003756775.1 300024164 9388567 complement(2726938..2728605) 1 NC_014313.1 PFAM: protein of unknown function DUF2320; KEGG: rpa:RPA0880 hypothetical protein; hypothetical protein 2728605 9388567 Hden_2658 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756775.1 2726938 R 582899 CDS YP_003756776.1 300024165 9388568 2728810..2729841 1 NC_014313.1 SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: oan:Oant_4269 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein 2729841 9388568 Hden_2659 Hyphomicrobium denitrificans ATCC 51888 KpsF/GutQ family protein YP_003756776.1 2728810 D 582899 CDS YP_003756777.1 300024166 9388569 complement(2729875..2730936) 1 NC_014313.1 TIGRFAM: ferrochelatase; KEGG: mch:Mchl_1748 ferrochelatase; PFAM: ferrochelatase; ferrochelatase 2730936 9388569 Hden_2660 Hyphomicrobium denitrificans ATCC 51888 ferrochelatase YP_003756777.1 2729875 R 582899 CDS YP_003756778.1 300024167 9388570 complement(2730976..2732025) 1 NC_014313.1 KEGG: csa:Csal_2889 hypothetical protein; PFAM: CHAD domain containing protein; SMART: CHAD domain containing protein; CHAD domain containing protein 2732025 9388570 Hden_2661 Hyphomicrobium denitrificans ATCC 51888 CHAD domain containing protein YP_003756778.1 2730976 R 582899 CDS YP_003756779.1 300024168 9388571 complement(2732123..2732737) 1 NC_014313.1 KEGG: smd:Smed_4170 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2732737 9388571 Hden_2662 Hyphomicrobium denitrificans ATCC 51888 thiamine-phosphate pyrophosphorylase YP_003756779.1 2732123 R 582899 CDS YP_003756780.1 300024169 9388572 complement(2732754..2733587) 1 NC_014313.1 PFAM: thiazole biosynthesis protein; KEGG: rpd:RPD_3430 thiazole synthase; thiazole biosynthesis protein 2733587 9388572 Hden_2663 Hyphomicrobium denitrificans ATCC 51888 thiazole biosynthesis protein YP_003756780.1 2732754 R 582899 CDS YP_003756781.1 300024170 9388573 complement(2733588..2733806) 1 NC_014313.1 KEGG: rde:RD1_0748 thiamine biosynthesis protein ThiS, TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 2733806 9388573 Hden_2664 Hyphomicrobium denitrificans ATCC 51888 thiamine biosynthesis protein ThiS YP_003756781.1 2733588 R 582899 CDS YP_003756782.1 300024171 9388574 2733978..2737424 1 NC_014313.1 KEGG: bja:bll2324 acylglycerophosphoethanolamine acyltransferase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; AMP-dependent synthetase and ligase 2737424 9388574 Hden_2665 Hyphomicrobium denitrificans ATCC 51888 AMP-dependent synthetase and ligase YP_003756782.1 2733978 D 582899 CDS YP_003756783.1 300024172 9388575 complement(2737377..2738384) 1 NC_014313.1 PFAM: FAD dependent oxidoreductase; KEGG: nwi:Nwi_2464 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2738384 9388575 Hden_2666 Hyphomicrobium denitrificans ATCC 51888 FAD dependent oxidoreductase YP_003756783.1 2737377 R 582899 CDS YP_003756784.1 300024173 9388576 complement(2738416..2740161) 1 NC_014313.1 KEGG: bpt:Bpet0836 hypothetical protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 2740161 9388576 Hden_2667 Hyphomicrobium denitrificans ATCC 51888 gamma-glutamyltransferase YP_003756784.1 2738416 R 582899 CDS YP_003756785.1 300024174 9388577 2740261..2740707 1 NC_014313.1 PFAM: cupin; KEGG: rpc:RPC_2157 cupin 2, barrel; cupin 2740707 9388577 Hden_2668 Hyphomicrobium denitrificans ATCC 51888 cupin YP_003756785.1 2740261 D 582899 CDS YP_003756786.1 300024175 9388578 2741098..2742168 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3215 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2742168 9388578 Hden_2669 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003756786.1 2741098 D 582899 CDS YP_003756787.1 300024176 9388579 2742342..2743301 1 NC_014313.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: cak:Caul_2751 lipoyl synthase; PFAM: radical SAM domain protein; lipoic acid synthetase 2743301 9388579 Hden_2670 Hyphomicrobium denitrificans ATCC 51888 lipoic acid synthetase YP_003756787.1 2742342 D 582899 CDS YP_003756788.1 300024177 9388580 2743332..2744120 1 NC_014313.1 TIGRFAM: hydroxypyruvate isomerase; KEGG: bja:blr3167 hydroxypyruvate isomerase protein; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 2744120 9388580 Hden_2671 Hyphomicrobium denitrificans ATCC 51888 hydroxypyruvate isomerase YP_003756788.1 2743332 D 582899 CDS YP_003756789.1 300024178 9388581 complement(2744134..2745066) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nmu:Nmul_A1739 transcriptional regulator CysB-like protein; LysR family transcriptional regulator 2745066 9388581 Hden_2672 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003756789.1 2744134 R 582899 CDS YP_003756790.1 300024179 9388582 complement(2745063..2746157) 1 NC_014313.1 TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; KEGG: tmz:Tmz1t_0622 sulfate ABC transporter ATPase subunit; SMART: ATPase AAA; sulfate ABC transporter ATPase 2746157 9388582 Hden_2673 Hyphomicrobium denitrificans ATCC 51888 sulfate ABC transporter ATPase YP_003756790.1 2745063 R 582899 CDS YP_003756791.1 300024180 9388583 complement(2746154..2747047) 1 NC_014313.1 KEGG: tmz:Tmz1t_0623 sulfate ABC transporter inner membrane subunit CysW; TIGRFAM: sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; sulfate ABC transporter inner membrane subunit CysW 2747047 9388583 Hden_2674 Hyphomicrobium denitrificans ATCC 51888 sulfate ABC transporter inner membrane subunit CysW YP_003756791.1 2746154 R 582899 CDS YP_003756792.1 300024181 9388584 complement(2747047..2747883) 1 NC_014313.1 KEGG: azo:azo1335 sulfate transporter permease; TIGRFAM: sulfate ABC transporter inner membrane subunit CysT; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter inner membrane subunit CysT 2747883 9388584 Hden_2675 Hyphomicrobium denitrificans ATCC 51888 sulfate ABC transporter inner membrane subunit CysT YP_003756792.1 2747047 R 582899 CDS YP_003756793.1 300024182 9388585 complement(2748023..2748664) 1 NC_014313.1 KEGG: nwi:Nwi_0662 XRE family transcriptional regulator; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator 2748664 9388585 Hden_2676 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003756793.1 2748023 R 582899 CDS YP_003756794.1 300024183 9388586 complement(2748955..2750286) 1 NC_014313.1 KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 2750286 9388586 Hden_2677 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756794.1 2748955 R 582899 CDS YP_003756795.1 300024184 9388587 complement(2750556..2751218) 1 NC_014313.1 KEGG: azo:azo2398 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1234; hypothetical protein 2751218 9388587 Hden_2678 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756795.1 2750556 R 582899 CDS YP_003756796.1 300024185 9388588 complement(2751393..2752436) 1 NC_014313.1 KEGG: azo:azo2363 periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 2752436 9388588 Hden_2679 Hyphomicrobium denitrificans ATCC 51888 sulfate ABC transporter periplasmic sulfate-binding protein YP_003756796.1 2751393 R 582899 CDS YP_003756797.1 300024186 9388589 complement(2752709..2753284) 1 NC_014313.1 KEGG: hch:HCH_00655 hypothetical protein; hypothetical protein 2753284 9388589 Hden_2680 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756797.1 2752709 R 582899 CDS YP_003756798.1 300024187 9388590 complement(2753316..2754572) 1 NC_014313.1 PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter permease; hypothetical protein 2754572 9388590 Hden_2681 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756798.1 2753316 R 582899 CDS YP_003756799.1 300024188 9388591 complement(2754569..2755330) 1 NC_014313.1 KEGG: pen:PSEEN0581 ABC transporter ATP binding component; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2755330 9388591 Hden_2682 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756799.1 2754569 R 582899 CDS YP_003756800.1 300024189 9388592 complement(2755334..2755906) 1 NC_014313.1 KEGG: rde:RD1_1739 hypothetical protein; hypothetical protein 2755906 9388592 Hden_2683 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756800.1 2755334 R 582899 CDS YP_003756801.1 300024190 9388593 complement(2756059..2756442) 1 NC_014313.1 KEGG: rpb:RPB_4191 hypothetical protein; hypothetical protein 2756442 9388593 Hden_2684 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756801.1 2756059 R 582899 CDS YP_003756802.1 300024191 9388594 2756746..2758704 1 NC_014313.1 KEGG: mpo:Mpop_0172 signal transduction histidine kinase; PFAM: HWE histidine kinase; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 2758704 9388594 Hden_2685 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003756802.1 2756746 D 582899 CDS YP_003756803.1 300024192 9388595 2758995..2759168 1 NC_014313.1 PFAM: protein of unknown function DUF1328; KEGG: msl:Msil_0245 protein of unknown function DUF1328; hypothetical protein 2759168 9388595 Hden_2686 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756803.1 2758995 D 582899 CDS YP_003756804.1 300024193 9388596 complement(2759259..2760065) 1 NC_014313.1 KEGG: rpe:RPE_1751 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver; ECF subfamily RNA polymerase sigma-24 subunit 2760065 9388596 Hden_2687 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003756804.1 2759259 R 582899 CDS YP_003756805.1 300024194 9388597 complement(2760138..2760701) 1 NC_014313.1 KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 2760701 9388597 Hden_2688 Hyphomicrobium denitrificans ATCC 51888 ECF subfamily RNA polymerase sigma-24 subunit YP_003756805.1 2760138 R 582899 CDS YP_003756806.1 300024195 9388598 complement(2760698..2760955) 1 NC_014313.1 KEGG: msl:Msil_0285 hypothetical protein; hypothetical protein 2760955 9388598 Hden_2689 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756806.1 2760698 R 582899 CDS YP_003756807.1 300024196 9388599 complement(2761086..2762408) 1 NC_014313.1 KEGG: rpe:RPE_2218 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase 2762408 9388599 Hden_2690 Hyphomicrobium denitrificans ATCC 51888 cobyrinic acid a,c-diamide synthase YP_003756807.1 2761086 R 582899 CDS YP_003756808.1 300024197 9388600 complement(2762422..2763177) 1 NC_014313.1 TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: bbt:BBta_3152 precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase 2763177 9388600 Hden_2691 Hyphomicrobium denitrificans ATCC 51888 precorrin-4 C11-methyltransferase YP_003756808.1 2762422 R 582899 CDS YP_003756809.1 300024198 9388601 complement(2763174..2763557) 1 NC_014313.1 KEGG: rsh:Rsph17029_1474 precorrin methylase; precorrin methylase 2763557 9388601 Hden_2692 Hyphomicrobium denitrificans ATCC 51888 precorrin methylase YP_003756809.1 2763174 R 582899 CDS YP_003756810.1 300024199 9388602 complement(2763554..2764777) 1 NC_014313.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: met:M446_2444 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE 2764777 9388602 Hden_2693 Hyphomicrobium denitrificans ATCC 51888 precorrin-6y C5,15-methyltransferase subunit CbiE YP_003756810.1 2763554 R 582899 CDS YP_003756811.1 300024200 9388603 2764795..2765580 1 NC_014313.1 TIGRFAM: precorrin-6x reductase; KEGG: rpc:RPC_1885 cobalt-precorrin-6x reductase; PFAM: precorrin-6x reductase CbiJ/CobK; precorrin-6x reductase 2765580 9388603 Hden_2694 Hyphomicrobium denitrificans ATCC 51888 precorrin-6x reductase YP_003756811.1 2764795 D 582899 CDS YP_003756812.1 300024201 9388604 complement(2765550..2766308) 1 NC_014313.1 KEGG: bid:Bind_3511 precorrin-3B C17-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-3B C17-methyltransferase 2766308 9388604 Hden_2695 Hyphomicrobium denitrificans ATCC 51888 precorrin-3B C17-methyltransferase YP_003756812.1 2765550 R 582899 CDS YP_003756813.1 300024202 9388605 complement(2766305..2767048) 1 NC_014313.1 KEGG: gbe:GbCGDNIH1_0661 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-2 C20-methyltransferase 2767048 9388605 Hden_2696 Hyphomicrobium denitrificans ATCC 51888 precorrin-2 C20-methyltransferase YP_003756813.1 2766305 R 582899 CDS YP_003756814.1 300024203 9388606 complement(2767045..2767686) 1 NC_014313.1 KEGG: mno:Mnod_2151 precorrin-8X methylmutase CbiC/CobH; PFAM: precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase 2767686 9388606 Hden_2697 Hyphomicrobium denitrificans ATCC 51888 precorrin-8X methylmutase YP_003756814.1 2767045 R 582899 CDS YP_003756815.1 300024204 9388607 complement(2767683..2768960) 1 NC_014313.1 KEGG: bid:Bind_3508 precorrin-3B synthase; TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; precorrin-3B synthase 2768960 9388607 Hden_2698 Hyphomicrobium denitrificans ATCC 51888 precorrin-3B synthase YP_003756815.1 2767683 R 582899 CDS YP_003756816.1 300024205 9388608 complement(2768957..2772220) 1 NC_014313.1 TIGRFAM: cobalt chelatase subunit CobN; KEGG: rpc:RPC_1889 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase; cobalt chelatase subunit CobN 2772220 9388608 Hden_2699 Hyphomicrobium denitrificans ATCC 51888 cobalt chelatase subunit CobN YP_003756816.1 2768957 R 582899 CDS YP_003756817.1 300024206 9388609 complement(2772220..2773257) 1 NC_014313.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bra:BRADO4908 cobalamin synthesis protein CobW; SMART: cobalamin synthesis CobW domain protein; cobalamin biosynthesis protein CobW 2773257 9388609 Hden_2700 Hyphomicrobium denitrificans ATCC 51888 cobalamin biosynthesis protein CobW YP_003756817.1 2772220 R 582899 CDS YP_003756818.1 300024207 9388610 2773657..2774181 1 NC_014313.1 KEGG: met:M446_2430 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 2774181 9388610 Hden_2701 Hyphomicrobium denitrificans ATCC 51888 adenosylcobinamide-phosphate guanylyltransferase YP_003756818.1 2773657 D 582899 CDS YP_003756819.1 300024208 9388611 2774184..2774804 1 NC_014313.1 TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: mno:Mnod_2143 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2774804 9388611 Hden_2702 Hyphomicrobium denitrificans ATCC 51888 cob(I)alamin adenosyltransferase YP_003756819.1 2774184 D 582899 CDS YP_003756820.1 300024209 9388612 2774974..2776446 1 NC_014313.1 KEGG: mno:Mnod_2141 cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; cobyric acid synthase CobQ 2776446 9388612 Hden_2703 Hyphomicrobium denitrificans ATCC 51888 cobyric acid synthase CobQ YP_003756820.1 2774974 D 582899 CDS YP_003756821.1 300024210 9388613 complement(2776430..2777404) 1 NC_014313.1 KEGG: mch:Mchl_5724 cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CobD 2777404 9388613 Hden_2704 Hyphomicrobium denitrificans ATCC 51888 cobalamin biosynthesis protein CobD YP_003756821.1 2776430 R 582899 CDS YP_003756822.1 300024211 9388614 complement(2777450..2778853) 1 NC_014313.1 KEGG: met:M446_3750 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; cob(II)yrinic acid a,c-diamide reductase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; nitroreductase; uroporphyrin-III C-methyltransferase 2778853 9388614 Hden_2705 Hyphomicrobium denitrificans ATCC 51888 uroporphyrin-III C-methyltransferase YP_003756822.1 2777450 R 582899 CDS YP_003756823.1 300024212 9388615 complement(2779201..2780034) 1 NC_014313.1 KEGG: ana:all0384 hypothetical protein; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese 2780034 9388615 Hden_2706 Hyphomicrobium denitrificans ATCC 51888 rhodanese YP_003756823.1 2779201 R 582899 CDS YP_003756824.1 300024213 9388616 complement(2780086..2782035) 1 NC_014313.1 PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3; acyltransferase 3 2782035 9388616 Hden_2707 Hyphomicrobium denitrificans ATCC 51888 acyltransferase 3 YP_003756824.1 2780086 R 582899 CDS YP_003756825.1 300024214 9388618 complement(2782336..2782557) 1 NC_014313.1 PFAM: protein of unknown function DUF329; KEGG: xau:Xaut_2724 hypothetical protein; hypothetical protein 2782557 9388618 Hden_2708 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756825.1 2782336 R 582899 CDS YP_003756826.1 300024215 9388619 complement(2782571..2783320) 1 NC_014313.1 KEGG: rpt:Rpal_5018 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 2783320 9388619 Hden_2709 Hyphomicrobium denitrificans ATCC 51888 maf protein YP_003756826.1 2782571 R 582899 CDS YP_003756827.1 300024216 9388620 2783464..2784183 1 NC_014313.1 KEGG: Crp/Fnr family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 2784183 9388620 Hden_2710 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003756827.1 2783464 D 582899 CDS YP_003756828.1 300024217 9388621 2784220..2785548 1 NC_014313.1 KEGG: mbt:JTY_1638 membrane-anchored adenylyl cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase 2785548 9388621 Hden_2711 Hyphomicrobium denitrificans ATCC 51888 adenylate/guanylate cyclase YP_003756828.1 2784220 D 582899 CDS YP_003756829.1 300024218 9388622 complement(2785531..2786025) 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: azc:AZC_3148 hypothetical protein; hypothetical protein 2786025 9388622 Hden_2712 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756829.1 2785531 R 582899 CDS YP_003756830.1 300024219 9388623 complement(2786032..2787330) 1 NC_014313.1 TIGRFAM: histidinol dehydrogenase; KEGG: mes:Meso_0190 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase 2787330 9388623 Hden_2713 Hyphomicrobium denitrificans ATCC 51888 histidinol dehydrogenase YP_003756830.1 2786032 R 582899 CDS YP_003756831.1 300024220 9388624 complement(2787366..2787833) 1 NC_014313.1 manually curated; KEGG: mno:Mnod_4928 hypothetical protein; hypothetical protein 2787833 9388624 Hden_2714 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756831.1 2787366 R 582899 CDS YP_003756832.1 300024221 9388625 complement(2787948..2789240) 1 NC_014313.1 KEGG: azc:AZC_3151 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2789240 9388625 Hden_2715 Hyphomicrobium denitrificans ATCC 51888 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_003756832.1 2787948 R 582899 CDS YP_003756833.1 300024222 9388627 complement(2789903..2791057) 1 NC_014313.1 PFAM: patatin; KEGG: aeh:Mlg_1761 patatin; patatin 2791057 9388627 Hden_2716 Hyphomicrobium denitrificans ATCC 51888 patatin YP_003756833.1 2789903 R 582899 CDS YP_003756834.1 300024223 9388628 2791439..2792809 1 NC_014313.1 TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; KEGG: mrd:Mrad2831_5457 magnesium transporter; SMART: CBS domain containing protein; magnesium transporter 2792809 9388628 Hden_2717 Hyphomicrobium denitrificans ATCC 51888 magnesium transporter YP_003756834.1 2791439 D 582899 CDS YP_003756835.1 300024224 9388629 2793112..2794257 1 NC_014313.1 KEGG: msl:Msil_2464 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2794257 9388629 Hden_2718 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003756835.1 2793112 D 582899 CDS YP_003756836.1 300024225 9388630 2794285..2797464 1 NC_014313.1 KEGG: msl:Msil_2463 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2797464 9388630 Hden_2719 Hyphomicrobium denitrificans ATCC 51888 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_003756836.1 2794285 D 582899 CDS YP_003756837.1 300024226 9388631 2797593..2798186 1 NC_014313.1 TIGRFAM: GTP cyclohydrolase I; KEGG: oca:OCAR_4254 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; GTP cyclohydrolase I 2798186 9388631 Hden_2720 Hyphomicrobium denitrificans ATCC 51888 GTP cyclohydrolase I YP_003756837.1 2797593 D 582899 CDS YP_003756838.1 300024227 9388632 complement(2798200..2798940) 1 NC_014313.1 KEGG: azc:AZC_0796 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 2798940 9388632 Hden_2721 Hyphomicrobium denitrificans ATCC 51888 tRNA pseudouridine synthase A YP_003756838.1 2798200 R 582899 CDS YP_003756839.1 300024228 9388633 complement(2798998..2799435) 1 NC_014313.1 KEGG: cpi:Cpin_7250 KWG Leptospira repeat protein; hypothetical protein 2799435 9388633 Hden_2722 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756839.1 2798998 R 582899 CDS YP_003756840.1 300024229 9388634 complement(2799539..2800465) 1 NC_014313.1 KEGG: avi:Avi_0541 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 2800465 9388634 Hden_2723 Hyphomicrobium denitrificans ATCC 51888 methionyl-tRNA formyltransferase YP_003756840.1 2799539 R 582899 CDS YP_003756841.1 300024230 9388635 complement(2800544..2801059) 1 NC_014313.1 KEGG: mes:Meso_0394 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2801059 9388635 Hden_2724 Hyphomicrobium denitrificans ATCC 51888 peptide deformylase YP_003756841.1 2800544 R 582899 CDS YP_003756842.1 300024231 9388636 complement(2801091..2802065) 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: met:M446_0034 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2802065 9388636 Hden_2725 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003756842.1 2801091 R 582899 CDS YP_003756843.1 300024232 9388637 complement(2802104..2803501) 1 NC_014313.1 KEGG: slo:Shew_1492 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 2803501 9388637 Hden_2726 Hyphomicrobium denitrificans ATCC 51888 MATE efflux family protein YP_003756843.1 2802104 R 582899 CDS YP_003756844.1 300024233 9388638 complement(2803556..2804161) 1 NC_014313.1 SMART: Toprim sub domain protein; manually curated; TIGRFAM: recombination protein RecR; KEGG: bhe:BH02300 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; recombination protein RecR 2804161 9388638 Hden_2727 Hyphomicrobium denitrificans ATCC 51888 recombination protein RecR YP_003756844.1 2803556 R 582899 CDS YP_003756845.1 300024234 9388639 complement(2804281..2804601) 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: azc:AZC_0144 hypothetical protein; hypothetical protein 2804601 9388639 Hden_2728 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756845.1 2804281 R 582899 CDS YP_003756846.1 300024235 9388640 complement(2804640..2806493) 1 NC_014313.1 TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA; KEGG: mno:Mnod_4752 DNA polymerase III subunits gamma and tau; SMART: ATPase AAA; DNA polymerase III subunits gamma and tau 2806493 9388640 Hden_2729 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunits gamma and tau YP_003756846.1 2804640 R 582899 CDS YP_003756847.1 300024236 9388642 complement(2807052..2807804) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr6518 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 2807804 9388642 Hden_2730 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756847.1 2807052 R 582899 CDS YP_003756848.1 300024237 9388643 complement(2807810..2808721) 1 NC_014313.1 KEGG: bja:bll1421 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; prephenate dehydratase 2808721 9388643 Hden_2731 Hyphomicrobium denitrificans ATCC 51888 prephenate dehydratase YP_003756848.1 2807810 R 582899 CDS YP_003756849.1 300024238 9388644 complement(2808776..2809528) 1 NC_014313.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: azc:AZC_0137 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2809528 9388644 Hden_2732 Hyphomicrobium denitrificans ATCC 51888 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_003756849.1 2808776 R 582899 CDS YP_003756850.1 300024239 9388645 2809698..2810267 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: azc:AZC_0136 cytochrome c; cytochrome C class I 2810267 9388645 Hden_2733 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003756850.1 2809698 D 582899 CDS YP_003756851.1 300024240 9388646 2810412..2812349 1 NC_014313.1 PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_0249 extracellular solute-binding protein; family 5 extracellular solute-binding protein 2812349 9388646 Hden_2734 Hyphomicrobium denitrificans ATCC 51888 family 5 extracellular solute-binding protein YP_003756851.1 2810412 D 582899 CDS YP_003756852.1 300024241 9388647 2812354..2814258 1 NC_014313.1 PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_0248 extracellular solute-binding protein; family 5 extracellular solute-binding protein 2814258 9388647 Hden_2735 Hyphomicrobium denitrificans ATCC 51888 family 5 extracellular solute-binding protein YP_003756852.1 2812354 D 582899 CDS YP_003756853.1 300024242 9388648 2814258..2815379 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpb:RPB_1772 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 2815379 9388648 Hden_2736 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003756853.1 2814258 D 582899 CDS YP_003756854.1 300024243 9388649 2815385..2816596 1 NC_014313.1 PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mno:Mnod_4147 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 2816596 9388649 Hden_2737 Hyphomicrobium denitrificans ATCC 51888 binding-protein-dependent transporters inner membrane component YP_003756854.1 2815385 D 582899 CDS YP_003756855.1 300024244 9388650 2816596..2818227 1 NC_014313.1 KEGG: rlg:Rleg_4449 ABC transporter; PFAM: ABC transporter related; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; ABC transporter 2818227 9388650 Hden_2738 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756855.1 2816596 D 582899 CDS YP_003756856.1 300024245 9388651 2818386..2820194 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: met:M446_0695 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 2820194 9388651 Hden_2739 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003756856.1 2818386 D 582899 CDS YP_003756857.1 300024246 9388652 2820249..2821976 1 NC_014313.1 PFAM: saccharopine dehydrogenase; KEGG: mpo:Mpop_5049 saccharopine dehydrogenase; saccharopine dehydrogenase 2821976 9388652 Hden_2740 Hyphomicrobium denitrificans ATCC 51888 saccharopine dehydrogenase YP_003756857.1 2820249 D 582899 CDS YP_003756858.1 300024247 9388653 complement(2821985..2822731) 1 NC_014313.1 KEGG: rlg:Rleg_6820 nuclease (SNase domain protein); PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); nuclease 2822731 9388653 Hden_2741 Hyphomicrobium denitrificans ATCC 51888 nuclease YP_003756858.1 2821985 R 582899 CDS YP_003756859.1 300024248 9388654 complement(2822821..2823594) 1 NC_014313.1 PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein 2823594 9388654 Hden_2742 Hyphomicrobium denitrificans ATCC 51888 pentapeptide repeat protein YP_003756859.1 2822821 R 582899 CDS YP_003756860.1 300024249 9388655 2823697..2826033 1 NC_014313.1 PFAM: AsmA family protein; KEGG: pla:Plav_0552 AsmA family protein; AsmA family protein 2826033 9388655 Hden_2743 Hyphomicrobium denitrificans ATCC 51888 AsmA family protein YP_003756860.1 2823697 D 582899 CDS YP_003756861.1 300024250 9388656 2826309..2826863 1 NC_014313.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: pla:Plav_0582 S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase-like protein 2826863 9388656 Hden_2744 Hyphomicrobium denitrificans ATCC 51888 S-adenosylmethionine decarboxylase-like protein YP_003756861.1 2826309 D 582899 CDS YP_003756862.1 300024251 9388657 complement(2827094..2827516) 1 NC_014313.1 PFAM: Domain of unknown function DUF1801; KEGG: mes:Meso_0627 hypothetical protein; hypothetical protein 2827516 9388657 Hden_2745 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756862.1 2827094 R 582899 CDS YP_003756863.1 300024252 9388658 complement(2827552..2828997) 1 NC_014313.1 KEGG: nwi:Nwi_2148 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 2828997 9388658 Hden_2746 Hyphomicrobium denitrificans ATCC 51888 EmrB/QacA subfamily drug resistance transporter YP_003756863.1 2827552 R 582899 CDS YP_003756864.1 300024253 9388659 2829270..2831216 1 NC_014313.1 KEGG: mpo:Mpop_2031 coenzyme A transferase; PFAM: coenzyme A transferase; SMART: coenzyme A transferase; coenzyme A transferase 2831216 9388659 Hden_2747 Hyphomicrobium denitrificans ATCC 51888 coenzyme A transferase YP_003756864.1 2829270 D 582899 CDS YP_003756865.1 300024254 9388660 2831377..2832378 1 NC_014313.1 PFAM: cytochrome C class I; KEGG: bmr:BMI_II348 cytochrome c family protein; cytochrome C class I 2832378 9388660 Hden_2748 Hyphomicrobium denitrificans ATCC 51888 cytochrome C class I YP_003756865.1 2831377 D 582899 CDS YP_003756866.1 300024255 9388661 complement(2832388..2833926) 1 NC_014313.1 PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF971; protein of unknown function DUF59; KEGG: mlo:mlr5402 ATP/GTP-binding-like protein; ATPase-like, ParA/MinD 2833926 9388661 Hden_2749 Hyphomicrobium denitrificans ATCC 51888 ATPase-like, ParA/MinD YP_003756866.1 2832388 R 582899 CDS YP_003756867.1 300024256 9388662 2834094..2834717 1 NC_014313.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: mlo:mlr0547 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2834717 9388662 Hden_2750 Hyphomicrobium denitrificans ATCC 51888 molybdopterin-guanine dinucleotide biosynthesis protein A YP_003756867.1 2834094 D 582899 CDS YP_003756868.1 300024257 9388663 2834741..2835295 1 NC_014313.1 KEGG: avi:Avi_2069 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2835295 9388663 Hden_2751 Hyphomicrobium denitrificans ATCC 51888 molybdopterin-guanine dinucleotide biosynthesis protein B YP_003756868.1 2834741 D 582899 CDS YP_003756869.1 300024258 9388664 2835368..2836417 1 NC_014313.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; KEGG: avi:Avi_2072 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 2836417 9388664 Hden_2752 Hyphomicrobium denitrificans ATCC 51888 molybdenum cofactor biosynthesis protein A YP_003756869.1 2835368 D 582899 CDS YP_003756870.1 300024259 9388665 complement(2836437..2836799) 1 NC_014313.1 KEGG: rpc:RPC_4869 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 2836799 9388665 Hden_2753 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003756870.1 2836437 R 582899 CDS YP_003756871.1 300024260 9388666 complement(2836837..2837379) 1 NC_014313.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: xau:Xaut_0023 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2837379 9388666 Hden_2754 Hyphomicrobium denitrificans ATCC 51888 hypoxanthine phosphoribosyltransferase YP_003756871.1 2836837 R 582899 CDS YP_003756872.1 300024261 9388667 2837547..2838203 1 NC_014313.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: azc:AZC_4611 cell division ATP-binding protein; SMART: ATPase AAA; cell division ATP-binding protein FtsE 2838203 9388667 Hden_2755 Hyphomicrobium denitrificans ATCC 51888 cell division ATP-binding protein FtsE YP_003756872.1 2837547 D 582899 CDS YP_003756873.1 300024262 9388668 2838187..2839305 1 NC_014313.1 KEGG: rpe:RPE_4831 hypothetical protein; cell division protein-like protein 2839305 9388668 Hden_2756 Hyphomicrobium denitrificans ATCC 51888 cell division protein-like protein YP_003756873.1 2838187 D 582899 CDS YP_003756874.1 300024263 9388669 2839461..2840105 1 NC_014313.1 PFAM: protein of unknown function DUF218; KEGG: azc:AZC_4613 hypothetical protein; hypothetical protein 2840105 9388669 Hden_2757 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756874.1 2839461 D 582899 CDS YP_003756875.1 300024264 9388670 2840098..2840895 1 NC_014313.1 KEGG: rpb:RPB_0837 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2840895 9388670 Hden_2758 Hyphomicrobium denitrificans ATCC 51888 phospholipid/glycerol acyltransferase YP_003756875.1 2840098 D 582899 CDS YP_003756876.1 300024265 9388671 complement(2840921..2841241) 1 NC_014313.1 PFAM: small multidrug resistance protein; KEGG: gau:GAU_0989 quaternary ammonium compound-resistance protein; small multidrug resistance protein 2841241 9388671 Hden_2759 Hyphomicrobium denitrificans ATCC 51888 small multidrug resistance protein YP_003756876.1 2840921 R 582899 CDS YP_003756877.1 300024266 9388672 2841486..2843915 1 NC_014313.1 KEGG: dsh:Dshi_2949 vitamin B12-dependent ribonucleotide reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 2843915 9388672 Hden_2760 Hyphomicrobium denitrificans ATCC 51888 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_003756877.1 2841486 D 582899 CDS YP_003756878.1 300024267 9388673 2844227..2844652 1 NC_014313.1 KEGG: met:M446_0951 hypothetical protein; hypothetical protein 2844652 9388673 Hden_2761 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756878.1 2844227 D 582899 CDS YP_003756879.1 300024268 9388674 complement(2844679..2845608) 1 NC_014313.1 KEGG: pla:Plav_1584 prephenate dehydrogenase; PFAM: prephenate dehydrogenase; prephenate dehydrogenase 2845608 9388674 Hden_2762 Hyphomicrobium denitrificans ATCC 51888 prephenate dehydrogenase YP_003756879.1 2844679 R 582899 CDS YP_003756880.1 300024269 9388675 complement(2845641..2846744) 1 NC_014313.1 KEGG: met:M446_5257 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase 2846744 9388675 Hden_2763 Hyphomicrobium denitrificans ATCC 51888 histidinol-phosphate aminotransferase YP_003756880.1 2845641 R 582899 CDS YP_003756881.1 300024270 9388676 2846891..2848093 1 NC_014313.1 TIGRFAM: homoserine O-acetyltransferase; KEGG: mlo:mlr3538 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 2848093 9388676 Hden_2764 Hyphomicrobium denitrificans ATCC 51888 homoserine O-acetyltransferase YP_003756881.1 2846891 D 582899 CDS YP_003756882.1 300024271 9388677 2848090..2848743 1 NC_014313.1 KEGG: nwi:Nwi_0586 methionine biosynthesis MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: methionine biosynthesis MetW protein; methionine biosynthesis protein MetW 2848743 9388677 Hden_2765 Hyphomicrobium denitrificans ATCC 51888 methionine biosynthesis protein MetW YP_003756882.1 2848090 D 582899 CDS YP_003756883.1 300024272 9388678 complement(2848806..2849543) 1 NC_014313.1 PFAM: methyltransferase type 11; KEGG: bid:Bind_0431 methyltransferase type 11; type 11 methyltransferase 2849543 9388678 Hden_2766 Hyphomicrobium denitrificans ATCC 51888 type 11 methyltransferase YP_003756883.1 2848806 R 582899 CDS YP_003756884.1 300024273 9388679 2849667..2850467 1 NC_014313.1 TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: rhi:NGR_c27100 glyoxalase II; SMART: beta-lactamase; hydroxyacylglutathione hydrolase 2850467 9388679 Hden_2767 Hyphomicrobium denitrificans ATCC 51888 hydroxyacylglutathione hydrolase YP_003756884.1 2849667 D 582899 CDS YP_003756885.1 300024274 9388680 2850488..2850922 1 NC_014313.1 PFAM: protein of unknown function DUF985; KEGG: mrd:Mrad2831_5124 hypothetical protein; hypothetical protein 2850922 9388680 Hden_2768 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756885.1 2850488 D 582899 CDS YP_003756886.1 300024275 9388681 2851133..2853103 1 NC_014313.1 PFAM: protein of unknown function DUF88; KEGG: dvm:DvMF_3051 protein of unknown function DUF88; hypothetical protein 2853103 9388681 Hden_2769 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756886.1 2851133 D 582899 CDS YP_003756887.1 300024276 9388682 complement(2853202..2853927) 1 NC_014313.1 KEGG: rhi:NGR_c32710 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase 2853927 9388682 Hden_2770 Hyphomicrobium denitrificans ATCC 51888 acetoacetyl-CoA reductase YP_003756887.1 2853202 R 582899 CDS YP_003756888.1 300024277 9388683 complement(2854014..2855204) 1 NC_014313.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: nwi:Nwi_3060 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 2855204 9388683 Hden_2771 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA acetyltransferase YP_003756888.1 2854014 R 582899 CDS YP_003756889.1 300024278 9388684 2855477..2856133 1 NC_014313.1 KEGG: bid:Bind_0428 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; polyhydroxyalkonate synthesis repressor PhaR 2856133 9388684 Hden_2772 Hyphomicrobium denitrificans ATCC 51888 polyhydroxyalkonate synthesis repressor PhaR YP_003756889.1 2855477 D 582899 CDS YP_003756890.1 300024279 9388685 complement(2856166..2857923) 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pla:Plav_1571 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 2857923 9388685 Hden_2773 Hyphomicrobium denitrificans ATCC 51888 diguanylate cyclase/phosphodiesterase YP_003756890.1 2856166 R 582899 CDS YP_003756891.1 300024280 9388686 complement(2858106..2858510) 1 NC_014313.1 KEGG: ret:RHE_CH04016 hypothetical protein; hypothetical protein 2858510 9388686 Hden_2774 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756891.1 2858106 R 582899 CDS YP_003756892.1 300024281 9388687 complement(2858659..2858844) 1 NC_014313.1 KEGG: mmr:Mmar10_1411 50S ribosomal protein L32P; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 2858844 9388687 Hden_2775 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L32 YP_003756892.1 2858659 R 582899 CDS YP_003756893.1 300024282 9388688 complement(2859048..2860406) 1 NC_014313.1 KEGG: met:M446_6644 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase 2860406 9388688 Hden_2776 Hyphomicrobium denitrificans ATCC 51888 monofunctional biosynthetic peptidoglycan transglycosylase YP_003756893.1 2859048 R 582899 CDS YP_003756894.1 300024283 9388689 2860461..2861366 1 NC_014313.1 PFAM: polyprenyl synthetase; KEGG: mch:Mchl_2752 polyprenyl synthetase; polyprenyl synthetase 2861366 9388689 Hden_2777 Hyphomicrobium denitrificans ATCC 51888 polyprenyl synthetase YP_003756894.1 2860461 D 582899 CDS YP_003756895.1 300024284 9388690 complement(2861393..2862049) 1 NC_014313.1 KEGG: rpb:RPB_2145 outer membrane protein; manually curated; PFAM: porin; porin 2862049 9388690 Hden_2778 Hyphomicrobium denitrificans ATCC 51888 porin YP_003756895.1 2861393 R 582899 CDS YP_003756896.1 300024285 9388691 complement(2862248..2863570) 1 NC_014313.1 PFAM: flavin-containing monooxygenase FMO; KEGG: cyt:cce_3763 flavin-binding family monooxygenase; flavin-containing monooxygenase FMO 2863570 9388691 Hden_2779 Hyphomicrobium denitrificans ATCC 51888 flavin-containing monooxygenase FMO YP_003756896.1 2862248 R 582899 CDS YP_003756897.1 300024286 9388692 complement(2863798..2865063) 1 NC_014313.1 KEGG: nha:Nham_0620 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2865063 9388692 Hden_2780 Hyphomicrobium denitrificans ATCC 51888 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003756897.1 2863798 R 582899 CDS YP_003756898.1 300024287 9388693 complement(2865097..2865900) 1 NC_014313.1 PFAM: ABC transporter; KEGG: bov:BOV_A1029 zinc ABC transporter permease; ABC transporter 2865900 9388693 Hden_2781 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756898.1 2865097 R 582899 CDS YP_003756899.1 300024288 9388694 complement(2865901..2866788) 1 NC_014313.1 KEGG: bmi:BMEA_B1117 zinc import ATP-binding protein ZnuC; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2866788 9388694 Hden_2782 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756899.1 2865901 R 582899 CDS YP_003756900.1 300024289 9388695 complement(2866803..2867294) 1 NC_014313.1 KEGG: azc:AZC_4579 Fe2+/Zn2+ uptake regulation protein; Fe2+/Zn2+ uptake regulation protein 2867294 9388695 Hden_2783 Hyphomicrobium denitrificans ATCC 51888 Fe2+/Zn2+ uptake regulation protein YP_003756900.1 2866803 R 582899 CDS YP_003756901.1 300024290 9388696 2867614..2870952 1 NC_014313.1 KEGG: bra:BRADO0812 hypothetical protein; hypothetical protein 2870952 9388696 Hden_2784 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756901.1 2867614 D 582899 CDS YP_003756902.1 300024291 9388697 complement(2870966..2871814) 1 NC_014313.1 KEGG: xau:Xaut_4106 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate hydrolase; ureidoglycolate lyase 2871814 9388697 Hden_2785 Hyphomicrobium denitrificans ATCC 51888 ureidoglycolate lyase YP_003756902.1 2870966 R 582899 CDS YP_003756903.1 300024292 9388698 2872221..2872385 1 NC_014313.1 hypothetical protein 2872385 9388698 Hden_2786 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756903.1 2872221 D 582899 CDS YP_003756904.1 300024293 9388699 2872567..2873457 1 NC_014313.1 KEGG: oca:OCAR_7059 carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 2873457 9388699 Hden_2787 Hyphomicrobium denitrificans ATCC 51888 carboxymethylenebutenolidase YP_003756904.1 2872567 D 582899 CDS YP_003756905.1 300024294 9388700 2873503..2873700 1 NC_014313.1 KEGG: azc:AZC_1459 hypothetical protein; hypothetical protein 2873700 9388700 Hden_2788 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756905.1 2873503 D 582899 CDS YP_003756906.1 300024295 9388701 2873806..2874159 1 NC_014313.1 PFAM: protein of unknown function DUF583; KEGG: rsk:RSKD131_1297 hypothetical protein; hypothetical protein 2874159 9388701 Hden_2789 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756906.1 2873806 D 582899 CDS YP_003756907.1 300024296 9388702 complement(2874192..2875193) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_2818 LysR family transcriptional regulator; LysR family transcriptional regulator 2875193 9388702 Hden_2790 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003756907.1 2874192 R 582899 CDS YP_003756908.1 300024297 9388703 2875268..2876041 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_0487 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2876041 9388703 Hden_2791 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756908.1 2875268 D 582899 CDS YP_003756909.1 300024298 9388704 complement(2876090..2878939) 1 NC_014313.1 KEGG: mpo:Mpop_0777 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: glycine cleavage system P-protein-like; glycine dehydrogenase 2878939 9388704 Hden_2792 Hyphomicrobium denitrificans ATCC 51888 glycine dehydrogenase YP_003756909.1 2876090 R 582899 CDS YP_003756910.1 300024299 9388705 complement(2878953..2879315) 1 NC_014313.1 KEGG: ara:Arad_2526 glycine cleavage system protein H; TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage system protein H; glycine cleavage system protein H 2879315 9388705 Hden_2793 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein H YP_003756910.1 2878953 R 582899 CDS YP_003756911.1 300024300 9388706 complement(2879351..2880499) 1 NC_014313.1 KEGG: azc:AZC_4245 glycine cleavage system T protein; TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; glycine cleavage system protein T 2880499 9388706 Hden_2794 Hyphomicrobium denitrificans ATCC 51888 glycine cleavage system protein T YP_003756911.1 2879351 R 582899 CDS YP_003756912.1 300024301 9388707 complement(2880834..2881235) 1 NC_014313.1 KEGG: nwi:Nwi_2161 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET 2881235 9388707 Hden_2795 Hyphomicrobium denitrificans ATCC 51888 nuclear protein SET YP_003756912.1 2880834 R 582899 CDS YP_003756913.1 300024302 9388708 2881537..2882151 1 NC_014313.1 KEGG: atc:AGR_C_4545 heme oxygenase; manually curated; PFAM: Haem oxygenase-like; Heme oxygenase-like protein 2882151 9388708 Hden_2796 Hyphomicrobium denitrificans ATCC 51888 Heme oxygenase-like protein YP_003756913.1 2881537 D 582899 CDS YP_003756914.1 300024303 9388709 complement(2882342..2884708) 1 NC_014313.1 KEGG: rlt:Rleg2_0221 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2884708 9388709 Hden_2797 Hyphomicrobium denitrificans ATCC 51888 methyl-accepting chemotaxis sensory transducer with Cache sensor YP_003756914.1 2882342 R 582899 CDS YP_003756915.1 300024304 9388710 complement(2884998..2886347) 1 NC_014313.1 KEGG: mno:Mnod_6193 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 2886347 9388710 Hden_2798 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003756915.1 2884998 R 582899 CDS YP_003756916.1 300024305 9388711 complement(2886344..2887009) 1 NC_014313.1 KEGG: mno:Mnod_6194 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 2887009 9388711 Hden_2799 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003756916.1 2886344 R 582899 CDS YP_003756917.1 300024306 9388712 complement(2887009..2887335) 1 NC_014313.1 KEGG: alv:Alvin_0024 membrane protein-like protein; hypothetical protein 2887335 9388712 Hden_2800 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756917.1 2887009 R 582899 CDS YP_003756918.1 300024307 9388713 2887471..2887749 1 NC_014313.1 KEGG: mpt:Mpe_A3147 signal peptide protein; signal peptide protein 2887749 9388713 Hden_2801 Hyphomicrobium denitrificans ATCC 51888 signal peptide protein YP_003756918.1 2887471 D 582899 CDS YP_003756919.1 300024308 9388714 complement(2887851..2888507) 1 NC_014313.1 KEGG: avn:Avin_11580 acetyltransferase (GNAT) family; hypothetical protein 2888507 9388714 Hden_2802 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756919.1 2887851 R 582899 CDS YP_003756920.1 300024309 9388715 complement(2888504..2889601) 1 NC_014313.1 KEGG: tkm:TK90_2534 hypothetical protein; hypothetical protein 2889601 9388715 Hden_2803 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756920.1 2888504 R 582899 CDS YP_003756921.1 300024310 9388716 complement(2889836..2890495) 1 NC_014313.1 PFAM: isochorismatase hydrolase; KEGG: bac:BamMC406_1819 isochorismatase hydrolase; isochorismatase hydrolase 2890495 9388716 Hden_2804 Hyphomicrobium denitrificans ATCC 51888 isochorismatase hydrolase YP_003756921.1 2889836 R 582899 CDS YP_003756922.1 300024311 9388717 complement(2890495..2891607) 1 NC_014313.1 KEGG: mei:Msip34_0694 phosphate-selective porin O and P; phosphate-selective porin O and P 2891607 9388717 Hden_2805 Hyphomicrobium denitrificans ATCC 51888 phosphate-selective porin O and P YP_003756922.1 2890495 R 582899 CDS YP_003756923.1 300024312 9388718 complement(2891653..2892252) 1 NC_014313.1 PFAM: HupE/UreJ protein; KEGG: rlg:Rleg_6126 HupE/UreJ protein; HupE/UreJ protein 2892252 9388718 Hden_2806 Hyphomicrobium denitrificans ATCC 51888 HupE/UreJ protein YP_003756923.1 2891653 R 582899 CDS YP_003756924.1 300024313 9388719 complement(2892275..2893150) 1 NC_014313.1 PFAM: urease accessory protein UreD; KEGG: mex:Mext_1199 urease accessory protein UreD; urease accessory protein UreD 2893150 9388719 Hden_2807 Hyphomicrobium denitrificans ATCC 51888 urease accessory protein UreD YP_003756924.1 2892275 R 582899 CDS YP_003756925.1 300024314 9388720 complement(2893147..2893794) 1 NC_014313.1 KEGG: bbt:BBta_4441 urease accessory protein UreG; TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; urease accessory protein UreG 2893794 9388720 Hden_2808 Hyphomicrobium denitrificans ATCC 51888 urease accessory protein UreG YP_003756925.1 2893147 R 582899 CDS YP_003756926.1 300024315 9388721 complement(2893798..2895510) 1 NC_014313.1 TIGRFAM: urease subunit alpha; KEGG: mex:Mext_1197 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein; urease subunit alpha 2895510 9388721 Hden_2809 Hyphomicrobium denitrificans ATCC 51888 urease subunit alpha YP_003756926.1 2893798 R 582899 CDS YP_003756927.1 300024316 9388722 complement(2895526..2896224) 1 NC_014313.1 TIGRFAM: urease subunit gamma; urease, beta subunit; KEGG: bbt:BBta_1961 bifunctional urease subunit gamma/beta; PFAM: Urease subunit gamma region; Urease subunit beta; urease subunit gamma 2896224 9388722 Hden_2810 Hyphomicrobium denitrificans ATCC 51888 urease subunit gamma YP_003756927.1 2895526 R 582899 CDS YP_003756928.1 300024317 9388723 complement(2896249..2896929) 1 NC_014313.1 PFAM: urease accessory protein UreF; KEGG: bbt:BBta_1960 urease accessory protein UreF; urease accessory protein UreF 2896929 9388723 Hden_2811 Hyphomicrobium denitrificans ATCC 51888 urease accessory protein UreF YP_003756928.1 2896249 R 582899 CDS YP_003756929.1 300024318 9388724 complement(2896926..2897378) 1 NC_014313.1 PFAM: urease accessory protein UreE; KEGG: bbt:BBta_1959 urease accessory protein UreE; urease accessory protein UreE 2897378 9388724 Hden_2812 Hyphomicrobium denitrificans ATCC 51888 urease accessory protein UreE YP_003756929.1 2896926 R 582899 CDS YP_003756930.1 300024319 9388725 complement(2897384..2898079) 1 NC_014313.1 TIGRFAM: urea ABC transporter ATP-binding protein; PFAM: ABC transporter; KEGG: rle:pRL120441 ABC transporter component; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 2898079 9388725 Hden_2813 Hyphomicrobium denitrificans ATCC 51888 urea ABC transporter ATP-binding protein YP_003756930.1 2897384 R 582899 CDS YP_003756931.1 300024320 9388726 complement(2898072..2898869) 1 NC_014313.1 TIGRFAM: urea ABC transporter ATP-binding protein; PFAM: ABC transporter; KEGG: atc:AGR_pAT_797 probable ATP-binding component of ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein 2898869 9388726 Hden_2814 Hyphomicrobium denitrificans ATCC 51888 urea ABC transporter ATP-binding protein YP_003756931.1 2898072 R 582899 CDS YP_003756932.1 300024321 9388727 complement(2898866..2899957) 1 NC_014313.1 KEGG: atc:AGR_pAT_795 ABC transporter (permease); TIGRFAM: urea ABC transporter permease; PFAM: inner-membrane translocator; urea ABC transporter permease 2899957 9388727 Hden_2815 Hyphomicrobium denitrificans ATCC 51888 urea ABC transporter permease YP_003756932.1 2898866 R 582899 CDS YP_003756933.1 300024322 9388728 complement(2899972..2900862) 1 NC_014313.1 PFAM: inner-membrane translocator; KEGG: rle:pRL120444 permease of ABC transporter; inner-membrane translocator 2900862 9388728 Hden_2816 Hyphomicrobium denitrificans ATCC 51888 inner-membrane translocator YP_003756933.1 2899972 R 582899 CDS YP_003756934.1 300024323 9388729 complement(2900914..2902158) 1 NC_014313.1 KEGG: atc:AGR_pAT_792 hypothetical protein; hypothetical protein 2902158 9388729 Hden_2817 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756934.1 2900914 R 582899 CDS YP_003756935.1 300024324 9388730 complement(2902352..2902957) 1 NC_014313.1 PFAM: ANTAR domain protein; KEGG: bra:BRADO5875 response regulator; ANTAR domain-containing protein with unknown sensor 2902957 9388730 Hden_2818 Hyphomicrobium denitrificans ATCC 51888 ANTAR domain-containing protein with unknown sensor YP_003756935.1 2902352 R 582899 CDS YP_003756936.1 300024325 9388731 complement(2902961..2904115) 1 NC_014313.1 PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO5876 aliphatic amidase expression-regulating protein (AmiC); extracellular ligand-binding receptor 2904115 9388731 Hden_2819 Hyphomicrobium denitrificans ATCC 51888 extracellular ligand-binding receptor YP_003756936.1 2902961 R 582899 CDS YP_003756937.1 300024326 9388732 complement(2904248..2905615) 1 NC_014313.1 KEGG: azl:AZL_a02790 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 2905615 9388732 Hden_2820 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003756937.1 2904248 R 582899 CDS YP_003756938.1 300024327 9388733 complement(2905624..2906313) 1 NC_014313.1 KEGG: sal:Sala_0801 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 2906313 9388733 Hden_2821 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003756938.1 2905624 R 582899 CDS YP_003756939.1 300024328 9388734 2906432..2907487 1 NC_014313.1 TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: swi:Swit_3713 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 2907487 9388734 Hden_2822 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003756939.1 2906432 D 582899 CDS YP_003756940.1 300024329 9388735 2907491..2910655 1 NC_014313.1 KEGG: swi:Swit_3712 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump 2910655 9388735 Hden_2823 Hyphomicrobium denitrificans ATCC 51888 CzcA family heavy metal efflux pump YP_003756940.1 2907491 D 582899 CDS YP_003756941.1 300024330 9388736 2910655..2910945 1 NC_014313.1 KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein 2910945 9388736 Hden_2824 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756941.1 2910655 D 582899 CDS YP_003756942.1 300024331 9388737 2910942..2911154 1 NC_014313.1 hypothetical protein 2911154 9388737 Hden_2825 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756942.1 2910942 D 582899 CDS YP_003756943.1 300024332 9388738 2911171..2911482 1 NC_014313.1 KEGG: tgo:TGME49_004510 hypothetical protein; hypothetical protein 2911482 9388738 Hden_2826 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756943.1 2911171 D 582899 CDS YP_003756944.1 300024333 9388739 2911764..2913116 1 NC_014313.1 PFAM: ferric reductase domain protein transmembrane component domain; oxidoreductase FAD-binding domain protein; KEGG: dia:Dtpsy_0748 ferric reductase domain protein transmembrane component; ferric reductase transmembrane domain-containing protein 2913116 9388739 Hden_2827 Hyphomicrobium denitrificans ATCC 51888 ferric reductase transmembrane domain-containing protein YP_003756944.1 2911764 D 582899 CDS YP_003756945.1 300024334 9388740 complement(2913284..2914030) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mag:amb0880 dehydrogenase; short-chain dehydrogenase/reductase SDR 2914030 9388740 Hden_2828 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003756945.1 2913284 R 582899 CDS YP_003756946.1 300024335 9388741 2914383..2914937 1 NC_014313.1 KEGG: mpt:Mpe_A2975 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 2914937 9388741 Hden_2829 Hyphomicrobium denitrificans ATCC 51888 BadM/Rrf2 family transcriptional regulator YP_003756946.1 2914383 D 582899 CDS YP_003756947.1 300024336 9388742 complement(2915054..2915584) 1 NC_014313.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: rlt:Rleg2_0711 bifunctional deaminase-reductase domain protein; bifunctional deaminase-reductase domain-containing protein 2915584 9388742 Hden_2830 Hyphomicrobium denitrificans ATCC 51888 bifunctional deaminase-reductase domain-containing protein YP_003756947.1 2915054 R 582899 CDS YP_003756948.1 300024337 9388743 2915820..2916119 1 NC_014313.1 KEGG: mtp:Mthe_0454 diaminopimelate epimerase; hypothetical protein 2916119 9388743 Hden_2831 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756948.1 2915820 D 582899 CDS YP_003756949.1 300024338 9388744 2916308..2917096 1 NC_014313.1 KEGG: vap:Vapar_3221 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 2917096 9388744 Hden_2832 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003756949.1 2916308 D 582899 CDS YP_003756950.1 300024339 9388745 2917207..2920914 1 NC_014313.1 TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bcj:BCAM2169 outer membrane autotransporter; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 2920914 9388745 Hden_2833 Hyphomicrobium denitrificans ATCC 51888 outer membrane autotransporter barrel domain-containing protein YP_003756950.1 2917207 D 582899 CDS YP_003756951.1 300024340 9388746 complement(2921055..2923442) 1 NC_014313.1 KEGG: nha:Nham_3292 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor 2923442 9388746 Hden_2834 Hyphomicrobium denitrificans ATCC 51888 TonB-dependent siderophore receptor YP_003756951.1 2921055 R 582899 CDS YP_003756952.1 300024341 9388748 complement(2924117..2924638) 1 NC_014313.1 hypothetical protein 2924638 9388748 Hden_2835 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756952.1 2924117 R 582899 CDS YP_003756953.1 300024342 9388749 complement(2924743..2925687) 1 NC_014313.1 TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: rpf:Rpic12D_0067 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 2925687 9388749 Hden_2836 Hyphomicrobium denitrificans ATCC 51888 2-dehydropantoate 2-reductase YP_003756953.1 2924743 R 582899 CDS YP_003756954.1 300024343 9388750 complement(2925779..2926363) 1 NC_014313.1 KEGG: cqu:CpipJ_CPIJ005630 hypothetical protein; hypothetical protein 2926363 9388750 Hden_2837 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756954.1 2925779 R 582899 CDS YP_003756955.1 300024344 9388751 complement(2926444..2928255) 1 NC_014313.1 KEGG: sme:SMc01756 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase 2928255 9388751 Hden_2838 Hyphomicrobium denitrificans ATCC 51888 aspartyl-tRNA synthetase YP_003756955.1 2926444 R 582899 CDS YP_003756956.1 300024345 9388752 2928501..2929655 1 NC_014313.1 SMART: 3'-5' exonuclease; TIGRFAM: ribonuclease D; KEGG: xau:Xaut_3138 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 2929655 9388752 Hden_2839 Hyphomicrobium denitrificans ATCC 51888 ribonuclease D YP_003756956.1 2928501 D 582899 CDS YP_003756957.1 300024346 9388753 complement(2929932..2930897) 1 NC_014313.1 KEGG: pzu:PHZ_p0115 heat shock protein DnaJ, N-terminal; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein 2930897 9388753 Hden_2840 Hyphomicrobium denitrificans ATCC 51888 chaperone DnaJ domain-containing protein YP_003756957.1 2929932 R 582899 CDS YP_003756958.1 300024347 9388754 complement(2930961..2932496) 1 NC_014313.1 PFAM: Ppx/GppA phosphatase; KEGG: azc:AZC_3665 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2932496 9388754 Hden_2841 Hyphomicrobium denitrificans ATCC 51888 Ppx/GppA phosphatase YP_003756958.1 2930961 R 582899 CDS YP_003756959.1 300024348 9388755 complement(2932512..2934683) 1 NC_014313.1 KEGG: bid:Bind_1568 polyphosphate kinase; PFAM: polyphosphate kinase; polyphosphate kinase 2934683 9388755 Hden_2842 Hyphomicrobium denitrificans ATCC 51888 polyphosphate kinase YP_003756959.1 2932512 R 582899 CDS YP_003756960.1 300024349 9388756 complement(2934774..2935448) 1 NC_014313.1 KEGG: rsq:Rsph17025_0399 chromosomal replication initiator, DnaA; chromosomal replication initiator, DnaA 2935448 9388756 Hden_2843 Hyphomicrobium denitrificans ATCC 51888 chromosomal replication initiator, DnaA YP_003756960.1 2934774 R 582899 CDS YP_003756961.1 300024350 9388757 complement(2935464..2936537) 1 NC_014313.1 PFAM: protein of unknown function UPF0118; KEGG: rec:RHECIAT_CH0001557 permease; hypothetical protein 2936537 9388757 Hden_2844 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756961.1 2935464 R 582899 CDS YP_003756962.1 300024351 9388758 complement(2936591..2937145) 1 NC_014313.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bra:BRADO3343 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase) (PGP synthase); CDP-alcohol phosphatidyltransferase 2937145 9388758 Hden_2845 Hyphomicrobium denitrificans ATCC 51888 CDP-alcohol phosphatidyltransferase YP_003756962.1 2936591 R 582899 CDS YP_003756963.1 300024352 9388759 complement(2937319..2938455) 1 NC_014313.1 KEGG: pla:Plav_3330 hypothetical protein; hypothetical protein 2938455 9388759 Hden_2846 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756963.1 2937319 R 582899 CDS YP_003756964.1 300024353 9388760 2938654..2939784 1 NC_014313.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: mno:Mnod_5547 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 2939784 9388760 Hden_2847 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylformylglycinamidine cyclo-ligase YP_003756964.1 2938654 D 582899 CDS YP_003756965.1 300024354 9388761 complement(2939822..2941639) 1 NC_014313.1 TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: rpe:RPE_0851 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 2941639 9388761 Hden_2848 Hyphomicrobium denitrificans ATCC 51888 methanol/ethanol family PQQ-dependent dehydrogenase YP_003756965.1 2939822 R 582899 CDS YP_003756966.1 300024355 9388762 2941867..2942127 1 NC_014313.1 KEGG: pcb:PC000826.00.0 hypothetical protein; hypothetical protein 2942127 9388762 Hden_2849 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756966.1 2941867 D 582899 CDS YP_003756967.1 300024356 9388763 2942354..2943433 1 NC_014313.1 PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0114 glycosyl transferase group 1; group 1 glycosyl transferase 2943433 9388763 Hden_2850 Hyphomicrobium denitrificans ATCC 51888 group 1 glycosyl transferase YP_003756967.1 2942354 D 582899 CDS YP_003756968.1 300024357 9388764 2943488..2944144 1 NC_014313.1 KEGG: mpo:Mpop_2023 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; phosphoribosylglycinamide formyltransferase 2944144 9388764 Hden_2851 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylglycinamide formyltransferase YP_003756968.1 2943488 D 582899 CDS YP_003756969.1 300024358 9388765 2944343..2945704 1 NC_014313.1 PFAM: cytochrome P450; KEGG: chl:Chy400_1647 cytochrome P450; cytochrome P450 2945704 9388765 Hden_2852 Hyphomicrobium denitrificans ATCC 51888 cytochrome P450 YP_003756969.1 2944343 D 582899 CDS YP_003756970.1 300024359 9388766 2946044..2946244 1 NC_014313.1 hypothetical protein 2946244 9388766 Hden_2853 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756970.1 2946044 D 582899 CDS YP_003756971.1 300024360 9388767 complement(2946420..2946935) 1 NC_014313.1 PFAM: DinB family protein; KEGG: acr:Acry_1562 DinB family protein; DinB family protein 2946935 9388767 Hden_2854 Hyphomicrobium denitrificans ATCC 51888 DinB family protein YP_003756971.1 2946420 R 582899 CDS YP_003756972.1 300024361 9388768 complement(2947005..2947427) 1 NC_014313.1 PFAM: nucleoside diphosphate kinase; KEGG: pzu:PHZ_c1820 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 2947427 9388768 Hden_2855 Hyphomicrobium denitrificans ATCC 51888 nucleoside-diphosphate kinase YP_003756972.1 2947005 R 582899 CDS YP_003756973.1 300024362 9388769 2947668..2949098 1 NC_014313.1 KEGG: bcm:Bcenmc03_3418 hypothetical protein; hypothetical protein 2949098 9388769 Hden_2856 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756973.1 2947668 D 582899 CDS YP_003756974.1 300024363 9388770 2949105..2949455 1 NC_014313.1 KEGG: tbd:Tbd_0892 hypothetical protein; hypothetical protein 2949455 9388770 Hden_2857 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756974.1 2949105 D 582899 CDS YP_003756975.1 300024364 9388771 2949496..2951400 1 NC_014313.1 KEGG: pla:Plav_3334 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 2951400 9388771 Hden_2858 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003756975.1 2949496 D 582899 CDS YP_003756976.1 300024365 9388772 2951575..2951874 1 NC_014313.1 KEGG: dwi:Dwil_GK12723 GK12723 gene product from transcript GK12723-RA; hypothetical protein 2951874 9388772 Hden_2859 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756976.1 2951575 D 582899 CDS YP_003756977.1 300024366 9388773 2951975..2953177 1 NC_014313.1 KEGG: nha:Nham_1796 chromate transporter; TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 2953177 9388773 Hden_2860 Hyphomicrobium denitrificans ATCC 51888 chromate transporter YP_003756977.1 2951975 D 582899 CDS YP_003756978.1 300024367 9388774 complement(2953188..2955269) 1 NC_014313.1 TIGRFAM: glycyl-tRNA synthetase subunit beta; KEGG: mch:Mchl_3416 glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta 2955269 9388774 Hden_2861 Hyphomicrobium denitrificans ATCC 51888 glycyl-tRNA synthetase subunit beta YP_003756978.1 2953188 R 582899 CDS YP_003756979.1 300024368 9388775 complement(2955345..2955833) 1 NC_014313.1 KEGG: mmu:100039562 predicted gene 2312; hypothetical protein 2955833 9388775 Hden_2862 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756979.1 2955345 R 582899 CDS YP_003756980.1 300024369 9388776 complement(2955830..2956774) 1 NC_014313.1 TIGRFAM: glycyl-tRNA synthetase subunit alpha; KEGG: bra:BRADO2029 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; glycyl-tRNA synthetase subunit alpha 2956774 9388776 Hden_2863 Hyphomicrobium denitrificans ATCC 51888 glycyl-tRNA synthetase subunit alpha YP_003756980.1 2955830 R 582899 CDS YP_003756981.1 300024370 9388777 complement(2956925..2957134) 1 NC_014313.1 KEGG: sbi:SORBI_07g003550 hypothetical protein; hypothetical protein 2957134 9388777 Hden_2864 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756981.1 2956925 R 582899 CDS YP_003756982.1 300024371 9388778 complement(2957155..2957988) 1 NC_014313.1 PFAM: peptidase S49; KEGG: bbt:BBta_2353 serine protease SohB; peptidase S49 2957988 9388778 Hden_2865 Hyphomicrobium denitrificans ATCC 51888 peptidase S49 YP_003756982.1 2957155 R 582899 CDS YP_003756983.1 300024372 9388779 complement(2958069..2958869) 1 NC_014313.1 PFAM: methyltransferase small; KEGG: mch:Mchl_3425 methyltransferase small; methyltransferase small 2958869 9388779 Hden_2866 Hyphomicrobium denitrificans ATCC 51888 methyltransferase small YP_003756983.1 2958069 R 582899 CDS YP_003756984.1 300024373 9388780 complement(2958856..2959089) 1 NC_014313.1 PFAM: protein of unknown function DUF2007; KEGG: rhi:NGR_c04590 hypothetical protein; hypothetical protein 2959089 9388780 Hden_2867 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756984.1 2958856 R 582899 CDS YP_003756985.1 300024374 9388781 2959178..2960206 1 NC_014313.1 PFAM: polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; polyprenyl synthetase 2960206 9388781 Hden_2868 Hyphomicrobium denitrificans ATCC 51888 polyprenyl synthetase YP_003756985.1 2959178 D 582899 CDS YP_003756986.1 300024375 9388782 complement(2960222..2961088) 1 NC_014313.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: rpe:RPE_4419 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 2961088 9388782 Hden_2869 Hyphomicrobium denitrificans ATCC 51888 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_003756986.1 2960222 R 582899 CDS YP_003756987.1 300024376 9388783 complement(2961172..2962989) 1 NC_014313.1 KEGG: nwi:Nwi_2594 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein 2962989 9388783 Hden_2870 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756987.1 2961172 R 582899 CDS YP_003756988.1 300024377 9388784 complement(2963198..2964886) 1 NC_014313.1 KEGG: pla:Plav_0719 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2964886 9388784 Hden_2871 Hyphomicrobium denitrificans ATCC 51888 electron-transferring-flavoprotein dehydrogenase YP_003756988.1 2963198 R 582899 CDS YP_003756989.1 300024378 9388785 2965049..2965876 1 NC_014313.1 KEGG: azl:AZL_e02140 DNA polymerase bacteriophage-type; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; phage SPO1 DNA polymerase-like protein 2965876 9388785 Hden_2872 Hyphomicrobium denitrificans ATCC 51888 phage SPO1 DNA polymerase-like protein YP_003756989.1 2965049 D 582899 CDS YP_003756990.1 300024379 9388786 2966075..2966599 1 NC_014313.1 KEGG: dvm:DvMF_1576 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; SMART: transcription activator effector binding; transcription activator effector binding protein 2966599 9388786 Hden_2873 Hyphomicrobium denitrificans ATCC 51888 transcription activator effector binding protein YP_003756990.1 2966075 D 582899 CDS YP_003756991.1 300024380 9388787 2966689..2967231 1 NC_014313.1 TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: mno:Mnod_6073 molybdenum cofactor biosynthesis protein B; SMART: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 2967231 9388787 Hden_2874 Hyphomicrobium denitrificans ATCC 51888 molybdenum cofactor biosynthesis protein B YP_003756991.1 2966689 D 582899 CDS YP_003756992.1 300024381 9388788 complement(2967228..2967932) 1 NC_014313.1 PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0708 glycosyl transferase; family 2 glycosyl transferase 2967932 9388788 Hden_2875 Hyphomicrobium denitrificans ATCC 51888 family 2 glycosyl transferase YP_003756992.1 2967228 R 582899 CDS YP_003756993.1 300024382 9388789 2968076..2969191 1 NC_014313.1 KEGG: bmt:BSUIS_A0415 radical SAM domain-containing protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2969191 9388789 Hden_2876 Hyphomicrobium denitrificans ATCC 51888 radical SAM protein YP_003756993.1 2968076 D 582899 CDS YP_003756994.1 300024383 9388790 2969222..2969917 1 NC_014313.1 KEGG: swi:Swit_4574 ribonuclease H; PFAM: ribonuclease HII/HIII; ribonuclease H 2969917 9388790 Hden_2877 Hyphomicrobium denitrificans ATCC 51888 ribonuclease H YP_003756994.1 2969222 D 582899 CDS YP_003756995.1 300024384 9388791 2970037..2971164 1 NC_014313.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pzu:PHZ_c0577 modification methylase; DNA methylase N-4/N-6 domain-containing protein 2971164 9388791 Hden_2878 Hyphomicrobium denitrificans ATCC 51888 DNA methylase N-4/N-6 domain-containing protein YP_003756995.1 2970037 D 582899 CDS YP_003756996.1 300024385 9388792 complement(2971171..2972283) 1 NC_014313.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; helix-hairpin-helix motif; KEGG: rce:RC1_0510 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; DNA-binding protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase 2972283 9388792 Hden_2879 Hyphomicrobium denitrificans ATCC 51888 A/G-specific adenine glycosylase YP_003756996.1 2971171 R 582899 CDS YP_003756997.1 300024386 9388793 2972382..2972933 1 NC_014313.1 PFAM: protein of unknown function DUF721; KEGG: bbt:BBta_2320 hypothetical protein; hypothetical protein 2972933 9388793 Hden_2880 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003756997.1 2972382 D 582899 CDS YP_003756998.1 300024387 9388794 2973063..2973764 1 NC_014313.1 PFAM: DSBA oxidoreductase; KEGG: msl:Msil_1603 DsbA oxidoreductase; DSBA oxidoreductase 2973764 9388794 Hden_2881 Hyphomicrobium denitrificans ATCC 51888 DSBA oxidoreductase YP_003756998.1 2973063 D 582899 CDS YP_003756999.1 300024388 9388795 2973780..2974574 1 NC_014313.1 KEGG: rhi:NGR_c05580 disulfide bond formation protein D; disulfide bond formation protein D 2974574 9388795 Hden_2882 Hyphomicrobium denitrificans ATCC 51888 disulfide bond formation protein D YP_003756999.1 2973780 D 582899 CDS YP_003757000.1 300024389 9388796 2974635..2978096 1 NC_014313.1 KEGG: bmr:BMI_I499 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; chromosome segregation protein SMC 2978096 9388796 Hden_2883 Hyphomicrobium denitrificans ATCC 51888 chromosome segregation protein SMC YP_003757000.1 2974635 D 582899 CDS YP_003757001.1 300024390 9388797 2978177..2978422 1 NC_014313.1 KEGG: rhi:NGR_c03620 hypothetical protein; hypothetical protein 2978422 9388797 Hden_2884 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757001.1 2978177 D 582899 CDS YP_003757002.1 300024391 9388798 2978663..2979064 1 NC_014313.1 KEGG: mlo:mlr7410 FoF1 ATP synthase, subunit I; FoF1 ATP synthase subunit I 2979064 9388798 Hden_2885 Hyphomicrobium denitrificans ATCC 51888 FoF1 ATP synthase subunit I YP_003757002.1 2978663 D 582899 CDS YP_003757003.1 300024392 9388799 2979083..2979841 1 NC_014313.1 KEGG: apb:SAR116_1101 H+-transporting two-sector ATPase, subunit alpha; TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; ATP synthase F0 subunit alpha 2979841 9388799 Hden_2886 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F0 subunit alpha YP_003757003.1 2979083 D 582899 CDS YP_003757004.1 300024393 9388800 2979906..2980130 1 NC_014313.1 KEGG: pub:SAR11_0117 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 C subunit 2980130 9388800 Hden_2887 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F0 C subunit YP_003757004.1 2979906 D 582899 CDS YP_003757005.1 300024394 9388801 2980166..2980729 1 NC_014313.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: azc:AZC_4262 ATP synthase subunit B precursor; H+transporting two-sector ATPase B/B' subunit 2980729 9388801 Hden_2888 Hyphomicrobium denitrificans ATCC 51888 H+transporting two-sector ATPase B/B' subunit YP_003757005.1 2980166 D 582899 CDS YP_003757006.1 300024395 9388802 2980739..2981230 1 NC_014313.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bov:BOV_0397 F0F1 ATP synthase subunit B; H+transporting two-sector ATPase B/B' subunit 2981230 9388802 Hden_2889 Hyphomicrobium denitrificans ATCC 51888 H+transporting two-sector ATPase B/B' subunit YP_003757006.1 2980739 D 582899 CDS YP_003757007.1 300024396 9388803 complement(2981320..2982021) 1 NC_014313.1 KEGG: avi:Avi_1078 hypothetical protein; hypothetical protein 2982021 9388803 Hden_2890 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757007.1 2981320 R 582899 CDS YP_003757008.1 300024397 9388804 2982172..2983149 1 NC_014313.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: oca:OCAR_7331 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2983149 9388804 Hden_2891 Hyphomicrobium denitrificans ATCC 51888 hydroxymethylbutenyl pyrophosphate reductase YP_003757008.1 2982172 D 582899 CDS YP_003757009.1 300024398 9388805 2983176..2984147 1 NC_014313.1 TIGRFAM: homoserine kinase; KEGG: rce:RC1_3648 homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase 2984147 9388805 Hden_2892 Hyphomicrobium denitrificans ATCC 51888 homoserine kinase YP_003757009.1 2983176 D 582899 CDS YP_003757010.1 300024399 9388806 2984144..2984623 1 NC_014313.1 KEGG: smd:Smed_0529 ribonuclease H; PFAM: ribonuclease H; ribonuclease H 2984623 9388806 Hden_2893 Hyphomicrobium denitrificans ATCC 51888 ribonuclease H YP_003757010.1 2984144 D 582899 CDS YP_003757011.1 300024400 9388807 complement(2984620..2985114) 1 NC_014313.1 PFAM: redoxin; KEGG: mno:Mnod_6935 redoxin domain protein; redoxin 2985114 9388807 Hden_2894 Hyphomicrobium denitrificans ATCC 51888 redoxin YP_003757011.1 2984620 R 582899 CDS YP_003757012.1 300024401 9388808 complement(2985165..2986001) 1 NC_014313.1 KEGG: mno:Mnod_6934 hypothetical protein; hypothetical protein 2986001 9388808 Hden_2895 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757012.1 2985165 R 582899 CDS YP_003757013.1 300024402 9388809 2986164..2986781 1 NC_014313.1 PFAM: protein of unknown function DUF179; KEGG: oca:OCAR_7326 hypothetical protein; hypothetical protein 2986781 9388809 Hden_2896 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757013.1 2986164 D 582899 CDS YP_003757014.1 300024403 9388810 complement(2986818..2990540) 1 NC_014313.1 TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: msl:Msil_1254 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) 2990540 9388810 Hden_2897 Hyphomicrobium denitrificans ATCC 51888 diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) YP_003757014.1 2986818 R 582899 CDS YP_003757015.1 300024404 9388811 complement(2990540..2991151) 1 NC_014313.1 KEGG: azc:AZC_2241 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine N-acetyltransferase 2991151 9388811 Hden_2898 Hyphomicrobium denitrificans ATCC 51888 ribosomal-protein-alanine N-acetyltransferase YP_003757015.1 2990540 R 582899 CDS YP_003757016.1 300024405 9388812 complement(2991159..2992460) 1 NC_014313.1 KEGG: azc:AZC_2240 mitochondrial processing peptidase-like protein; PFAM: peptidase M16 domain protein; processing peptidase 2992460 9388812 Hden_2899 Hyphomicrobium denitrificans ATCC 51888 processing peptidase YP_003757016.1 2991159 R 582899 CDS YP_003757017.1 300024406 9388813 complement(2992457..2993857) 1 NC_014313.1 TIGRFAM: threonine synthase; KEGG: xau:Xaut_3524 threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; threonine synthase 2993857 9388813 Hden_2900 Hyphomicrobium denitrificans ATCC 51888 threonine synthase YP_003757017.1 2992457 R 582899 CDS YP_003757018.1 300024407 9388814 complement(2993961..2994746) 1 NC_014313.1 PFAM: Surfeit locus 1 family protein; KEGG: met:M446_2342 surfeit locus 1 family protein; Surfeit locus 1 family protein 2994746 9388814 Hden_2901 Hyphomicrobium denitrificans ATCC 51888 Surfeit locus 1 family protein YP_003757018.1 2993961 R 582899 CDS YP_003757019.1 300024408 9388815 complement(2994749..2995132) 1 NC_014313.1 PFAM: protein of unknown function DUF983; KEGG: bra:BRADO6700 hypothetical protein; hypothetical protein 2995132 9388815 Hden_2902 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757019.1 2994749 R 582899 CDS YP_003757020.1 300024409 9388816 complement(2995281..2996216) 1 NC_014313.1 PFAM: cytochrome C oxidase subunit III; KEGG: pla:Plav_0673 cytochrome C oxidase subunit III; cytochrome C oxidase subunit III 2996216 9388816 Hden_2903 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase subunit III YP_003757020.1 2995281 R 582899 CDS YP_003757021.1 300024410 9388817 complement(2996352..2996966) 1 NC_014313.1 PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: oan:Oant_0585 cytochrome C oxidase assembly protein; cytochrome C oxidase assembly protein CtaG/Cox11 2996966 9388817 Hden_2904 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase assembly protein CtaG/Cox11 YP_003757021.1 2996352 R 582899 CDS YP_003757022.1 300024411 9388818 complement(2996966..2997127) 1 NC_014313.1 KEGG: bid:Bind_0727 protein CoxF; protein CoxF 2997127 9388818 Hden_2905 Hyphomicrobium denitrificans ATCC 51888 protein CoxF YP_003757022.1 2996966 R 582899 CDS YP_003757023.1 300024412 9388819 complement(2997139..2998062) 1 NC_014313.1 KEGG: pla:Plav_0671 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 2998062 9388819 Hden_2906 Hyphomicrobium denitrificans ATCC 51888 protoheme IX farnesyltransferase YP_003757023.1 2997139 R 582899 CDS YP_003757024.1 300024413 9388820 complement(2998163..2999788) 1 NC_014313.1 KEGG: azc:AZC_2959 cytochrome C oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I 2999788 9388820 Hden_2907 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase subunit I YP_003757024.1 2998163 R 582899 CDS YP_003757025.1 300024414 9388821 complement(2999882..3000859) 1 NC_014313.1 KEGG: rpd:RPD_0814 cytochrome-c oxidase; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C oxidase subunit II 3000859 9388821 Hden_2908 Hyphomicrobium denitrificans ATCC 51888 cytochrome C oxidase subunit II YP_003757025.1 2999882 R 582899 CDS YP_003757026.1 300024415 9388822 3001245..3001856 1 NC_014313.1 PFAM: invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein; invasion associated locus B family protein 3001856 9388822 Hden_2909 Hyphomicrobium denitrificans ATCC 51888 invasion associated locus B family protein YP_003757026.1 3001245 D 582899 CDS YP_003757027.1 300024416 9388823 complement(3001927..3002355) 1 NC_014313.1 KEGG: ppg:PputGB1_2895 catalase domain-containing protein; hypothetical protein 3002355 9388823 Hden_2910 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757027.1 3001927 R 582899 CDS YP_003757028.1 300024417 9388824 3002702..3003613 1 NC_014313.1 KEGG: nha:Nham_2600 hypothetical protein; hypothetical protein 3003613 9388824 Hden_2911 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757028.1 3002702 D 582899 CDS YP_003757029.1 300024418 9388825 3003640..3003945 1 NC_014313.1 KEGG: oaa:100075777 similar to WW domain-containing adapter protein with coiled-coil; hypothetical protein 3003945 9388825 Hden_2912 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757029.1 3003640 D 582899 CDS YP_003757030.1 300024419 9388826 3004365..3005006 1 NC_014313.1 PFAM: regulatory protein TetR; KEGG: met:M446_0429 TetR family transcriptional regulator; TetR family transcriptional regulator 3005006 9388826 Hden_2913 Hyphomicrobium denitrificans ATCC 51888 TetR family transcriptional regulator YP_003757030.1 3004365 D 582899 CDS YP_003757031.1 300024420 9388827 3005003..3006217 1 NC_014313.1 KEGG: met:M446_0428 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3006217 9388827 Hden_2914 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003757031.1 3005003 D 582899 CDS YP_003757032.1 300024421 9388828 3006217..3009351 1 NC_014313.1 PFAM: acriflavin resistance protein; KEGG: met:M446_0427 acriflavin resistance protein; acriflavin resistance protein 3009351 9388828 Hden_2915 Hyphomicrobium denitrificans ATCC 51888 acriflavin resistance protein YP_003757032.1 3006217 D 582899 CDS YP_003757033.1 300024422 9388829 3009444..3010583 1 NC_014313.1 PFAM: protein of unknown function DUF533; KEGG: msl:Msil_0620 protein of unknown function DUF533; hypothetical protein 3010583 9388829 Hden_2916 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757033.1 3009444 D 582899 CDS YP_003757034.1 300024423 9388830 complement(3010685..3011791) 1 NC_014313.1 PFAM: secretion protein HlyD; KEGG: bbt:BBta_7064 hypothetical protein; secretion protein HlyD 3011791 9388830 Hden_2917 Hyphomicrobium denitrificans ATCC 51888 secretion protein HlyD YP_003757034.1 3010685 R 582899 CDS YP_003757035.1 300024424 9388831 complement(3011784..3012536) 1 NC_014313.1 KEGG: bbt:BBta_7063 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 3012536 9388831 Hden_2918 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003757035.1 3011784 R 582899 CDS YP_003757036.1 300024425 9388832 complement(3012533..3013663) 1 NC_014313.1 PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 ABC transporter permease; hypothetical protein 3013663 9388832 Hden_2919 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757036.1 3012533 R 582899 CDS YP_003757037.1 300024426 9388833 3013924..3014589 1 NC_014313.1 PFAM: protein of unknown function DUF2147; KEGG: xau:Xaut_1034 hypothetical protein; hypothetical protein 3014589 9388833 Hden_2920 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757037.1 3013924 D 582899 CDS YP_003757038.1 300024427 9388834 complement(3014558..3015445) 1 NC_014313.1 manually curated; KEGG: azc:AZC_1648 esterase; esterase 3015445 9388834 Hden_2921 Hyphomicrobium denitrificans ATCC 51888 esterase YP_003757038.1 3014558 R 582899 CDS YP_003757039.1 300024428 9388835 3016005..3017813 1 NC_014313.1 KEGG: mvn:Mevan_1402 methyl-accepting chemotaxis sensory transducer; hypothetical protein 3017813 9388835 Hden_2922 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757039.1 3016005 D 582899 CDS YP_003757040.1 300024429 9388836 3017946..3018161 1 NC_014313.1 KEGG: mes:Meso_3941 hypothetical protein; hypothetical protein 3018161 9388836 Hden_2923 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757040.1 3017946 D 582899 CDS YP_003757041.1 300024430 9388837 3018275..3018508 1 NC_014313.1 KEGG: rer:RER_07200 hypothetical protein; hypothetical protein 3018508 9388837 Hden_2924 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757041.1 3018275 D 582899 CDS YP_003757042.1 300024431 9388838 complement(3018479..3020380) 1 NC_014313.1 KEGG: sal:Sala_0171 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; aminotransferase class IV; para-aminobenzoate synthase subunit I 3020380 9388838 Hden_2925 Hyphomicrobium denitrificans ATCC 51888 para-aminobenzoate synthase subunit I YP_003757042.1 3018479 R 582899 CDS YP_003757043.1 300024432 9388839 3020631..3021854 1 NC_014313.1 PFAM: monooxygenase FAD-binding; KEGG: nwi:Nwi_2327 hypothetical protein; FAD-binding monooxygenase protein 3021854 9388839 Hden_2926 Hyphomicrobium denitrificans ATCC 51888 FAD-binding monooxygenase protein YP_003757043.1 3020631 D 582899 CDS YP_003757044.1 300024433 9388840 3022109..3023158 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: gox:GOX0315 sensory transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; signal transduction histidine kinase 3023158 9388840 Hden_2927 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003757044.1 3022109 D 582899 CDS YP_003757045.1 300024434 9388841 complement(3023227..3024171) 1 NC_014313.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: mlo:mlr9579 magnesium and cobalt transporter; Mg2 transporter protein CorA family protein 3024171 9388841 Hden_2928 Hyphomicrobium denitrificans ATCC 51888 Mg2 transporter protein CorA family protein YP_003757045.1 3023227 R 582899 CDS YP_003757046.1 300024435 9388843 complement(3024517..3024648) 1 NC_014313.1 hypothetical protein 3024648 9388843 Hden_2930 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757046.1 3024517 R 582899 CDS YP_003757047.1 300024436 9388844 3024741..3026450 1 NC_014313.1 TIGRFAM: potassium-transporting ATPase subunit alpha; KEGG: smd:Smed_5358 potassium-transporting ATPase A; PFAM: K transporting ATPase subunit alpha; potassium-transporting ATPase subunit alpha 3026450 9388844 Hden_2931 Hyphomicrobium denitrificans ATCC 51888 potassium-transporting ATPase subunit alpha YP_003757047.1 3024741 D 582899 CDS YP_003757048.1 300024437 9388845 3026460..3028511 1 NC_014313.1 KEGG: sme:SMa2331 potassium-transporting ATPase B; TIGRFAM: K+-transporting ATPase subunit beta; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; K+-transporting ATPase subunit beta 3028511 9388845 Hden_2932 Hyphomicrobium denitrificans ATCC 51888 K+-transporting ATPase subunit beta YP_003757048.1 3026460 D 582899 CDS YP_003757049.1 300024438 9388846 3028539..3029117 1 NC_014313.1 TIGRFAM: potassium ABC transporter ATPase; KEGG: oca:OCAR_4177 K+-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium ABC transporter ATPase 3029117 9388846 Hden_2933 Hyphomicrobium denitrificans ATCC 51888 potassium ABC transporter ATPase YP_003757049.1 3028539 D 582899 CDS YP_003757050.1 300024439 9388847 3029121..3031841 1 NC_014313.1 KEGG: sme:SMa2327 sensor protein; PFAM: osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; osmosensitive K channel signal transduction histidine kinase 3031841 9388847 Hden_2934 Hyphomicrobium denitrificans ATCC 51888 osmosensitive K channel signal transduction histidine kinase YP_003757050.1 3029121 D 582899 CDS YP_003757051.1 300024440 9388848 3031838..3032530 1 NC_014313.1 KEGG: smd:Smed_5362 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 3032530 9388848 Hden_2935 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003757051.1 3031838 D 582899 CDS YP_003757052.1 300024441 9388849 3032566..3034041 1 NC_014313.1 KEGG: oan:Oant_4139 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3034041 9388849 Hden_2936 Hyphomicrobium denitrificans ATCC 51888 GntR family transcriptional regulator YP_003757052.1 3032566 D 582899 CDS YP_003757053.1 300024442 9388850 3034189..3034902 1 NC_014313.1 KEGG: rpa:RPA1393 hypothetical protein; hypothetical protein 3034902 9388850 Hden_2937 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757053.1 3034189 D 582899 CDS YP_003757054.1 300024443 9388851 3035622..3036623 1 NC_014313.1 PFAM: protein of unknown function DUF323; KEGG: mno:Mnod_8069 protein of unknown function DUF323; hypothetical protein 3036623 9388851 Hden_2938 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757054.1 3035622 D 582899 CDS YP_003757055.1 300024444 9388852 3036642..3037721 1 NC_014313.1 KEGG: gme:Gmet_1199 hypothetical protein; hypothetical protein 3037721 9388852 Hden_2939 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757055.1 3036642 D 582899 CDS YP_003757056.1 300024445 9388853 3037814..3039616 1 NC_014313.1 PFAM: sulfatase; KEGG: fjo:Fjoh_1142 sulfatase; sulfatase 3039616 9388853 Hden_2940 Hyphomicrobium denitrificans ATCC 51888 sulfatase YP_003757056.1 3037814 D 582899 CDS YP_003757057.1 300024446 9388854 3039638..3040651 1 NC_014313.1 KEGG: app:CAP2UW1_0198 nonspecific acid phosphatase precursor; nonspecific acid phosphatase 3040651 9388854 Hden_2941 Hyphomicrobium denitrificans ATCC 51888 nonspecific acid phosphatase YP_003757057.1 3039638 D 582899 CDS YP_003757058.1 300024447 9388855 3040648..3042090 1 NC_014313.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: nha:Nham_2980 hypothetical protein; hypothetical protein 3042090 9388855 Hden_2942 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757058.1 3040648 D 582899 CDS YP_003757059.1 300024448 9388856 3042115..3043224 1 NC_014313.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rme:Rmet_5225 hypothetical protein; hypothetical protein 3043224 9388856 Hden_2943 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757059.1 3042115 D 582899 CDS YP_003757060.1 300024449 9388857 3043254..3043490 1 NC_014313.1 KEGG: xau:Xaut_3415 hypothetical protein; hypothetical protein 3043490 9388857 Hden_2944 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757060.1 3043254 D 582899 CDS YP_003757061.1 300024450 9388858 3043487..3044428 1 NC_014313.1 PFAM: secretion protein HlyD; KEGG: nha:Nham_2977 secretion protein HlyD; secretion protein HlyD 3044428 9388858 Hden_2945 Hyphomicrobium denitrificans ATCC 51888 secretion protein HlyD YP_003757061.1 3043487 D 582899 CDS YP_003757062.1 300024451 9388859 3044619..3045551 1 NC_014313.1 KEGG: mea:Mex_2p1237 hypothetical protein; hypothetical protein 3045551 9388859 Hden_2946 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757062.1 3044619 D 582899 CDS YP_003757063.1 300024452 9388860 3045708..3046319 1 NC_014313.1 KEGG: mlo:mlr2855 two-component response regulator; PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver; response regulator receiver and ANTAR domain-containing protein 3046319 9388860 Hden_2947 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver and ANTAR domain-containing protein YP_003757063.1 3045708 D 582899 CDS YP_003757064.1 300024453 9388861 3046322..3047548 1 NC_014313.1 KEGG: mlo:mlr2856 nitrate transporter component, NrtA; nitrate transporter component, NrtA 3047548 9388861 Hden_2948 Hyphomicrobium denitrificans ATCC 51888 nitrate transporter component, NrtA YP_003757064.1 3046322 D 582899 CDS YP_003757065.1 300024454 9388862 3047828..3049153 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: mes:Meso_1450 major facilitator transporter; major facilitator superfamily protein 3049153 9388862 Hden_2949 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003757065.1 3047828 D 582899 CDS YP_003757066.1 300024455 9388863 3049150..3049263 1 NC_014313.1 hypothetical protein 3049263 9388863 Hden_2950 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757066.1 3049150 D 582899 CDS YP_003757067.1 300024456 9388864 3049260..3051713 1 NC_014313.1 KEGG: ret:RHE_CH01782 nitrite reductase [NAD(P)H], large subunit protein; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (NAD(P)H), large subunit 3051713 9388864 Hden_2951 Hyphomicrobium denitrificans ATCC 51888 nitrite reductase (NAD(P)H), large subunit YP_003757067.1 3049260 D 582899 CDS YP_003757068.1 300024457 9388865 3051718..3052047 1 NC_014313.1 KEGG: mlo:mlr2863 nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H), small subunit 3052047 9388865 Hden_2952 Hyphomicrobium denitrificans ATCC 51888 nitrite reductase (NAD(P)H), small subunit YP_003757068.1 3051718 D 582899 CDS YP_003757069.1 300024458 9388866 3052059..3054719 1 NC_014313.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rlg:Rleg_1627 molybdopterin oxidoreductase; molybdopterin oxidoreductase 3054719 9388866 Hden_2953 Hyphomicrobium denitrificans ATCC 51888 molybdopterin oxidoreductase YP_003757069.1 3052059 D 582899 CDS YP_003757070.1 300024459 9388867 complement(3055128..3055526) 1 NC_014313.1 KEGG: bra:BRADO6362 hypothetical protein; hypothetical protein 3055526 9388867 Hden_2954 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757070.1 3055128 R 582899 CDS YP_003757071.1 300024460 9388868 complement(3055582..3056187) 1 NC_014313.1 KEGG: cyh:Cyan8802_3578 hypothetical protein; hypothetical protein 3056187 9388868 Hden_2955 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757071.1 3055582 R 582899 CDS YP_003757072.1 300024461 9388869 complement(3056194..3056493) 1 NC_014313.1 KEGG: pcs:Pc18g03770 Pc18g03770; hypothetical protein 3056493 9388869 Hden_2956 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757072.1 3056194 R 582899 CDS YP_003757073.1 300024462 9388870 complement(3056490..3056885) 1 NC_014313.1 KEGG: met:M446_0272 methyl-accepting chemotaxis sensory transducer; hypothetical protein 3056885 9388870 Hden_2957 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757073.1 3056490 R 582899 CDS YP_003757074.1 300024463 9388871 complement(3056885..3057766) 1 NC_014313.1 PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: xau:Xaut_3175 hypothetical protein; hypothetical protein 3057766 9388871 Hden_2958 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757074.1 3056885 R 582899 CDS YP_003757075.1 300024464 9388872 complement(3057936..3060218) 1 NC_014313.1 KEGG: mag:amb4275 hypothetical protein; hypothetical protein 3060218 9388872 Hden_2959 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757075.1 3057936 R 582899 CDS YP_003757076.1 300024465 9388873 complement(3060221..3060430) 1 NC_014313.1 KEGG: pgu:PGUG_00526 hypothetical protein; hypothetical protein 3060430 9388873 Hden_2960 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757076.1 3060221 R 582899 CDS YP_003757077.1 300024466 9388874 complement(3060430..3061404) 1 NC_014313.1 KEGG: oan:Oant_2297 phage-related tail fibre protein-like protein; hypothetical protein 3061404 9388874 Hden_2961 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757077.1 3060430 R 582899 CDS YP_003757078.1 300024467 9388875 complement(3061408..3064029) 1 NC_014313.1 KEGG: dvu:DVU2153 tail fiber protein; hypothetical protein 3064029 9388875 Hden_2962 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757078.1 3061408 R 582899 CDS YP_003757079.1 300024468 9388876 3064041..3064430 1 NC_014313.1 KEGG: hvo:HVO_1134 hypothetical protein; hypothetical protein 3064430 9388876 Hden_2963 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757079.1 3064041 D 582899 CDS YP_003757080.1 300024469 9388877 complement(3064436..3064915) 1 NC_014313.1 KEGG: ppr:PBPRB1275 hypothetical protein; hypothetical protein 3064915 9388877 Hden_2964 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757080.1 3064436 R 582899 CDS YP_003757081.1 300024470 9388878 complement(3064915..3065265) 1 NC_014313.1 KEGG: sfu:Sfum_1890 hypothetical protein; hypothetical protein 3065265 9388878 Hden_2965 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757081.1 3064915 R 582899 CDS YP_003757082.1 300024471 9388879 complement(3065271..3067382) 1 NC_014313.1 PFAM: Phage tail tape measure protein, conserved region; KEGG: dvu:DVU2157 tail tape measure protein; Phage tail tape measure protein, conserved region 3067382 9388879 Hden_2966 Hyphomicrobium denitrificans ATCC 51888 Phage tail tape measure protein, conserved region YP_003757082.1 3065271 R 582899 CDS YP_003757083.1 300024472 9388880 complement(3067375..3067608) 1 NC_014313.1 hypothetical protein 3067608 9388880 Hden_2967 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757083.1 3067375 R 582899 CDS YP_003757084.1 300024473 9388881 complement(3067605..3067985) 1 NC_014313.1 KEGG: hmu:Hmuk_0465 D12 class N6 adenine-specific DNA methyltransferase; hypothetical protein 3067985 9388881 Hden_2968 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757084.1 3067605 R 582899 CDS YP_003757085.1 300024474 9388882 complement(3068004..3068474) 1 NC_014313.1 KEGG: mpo:Mpop_5468 hypothetical protein; hypothetical protein 3068474 9388882 Hden_2969 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757085.1 3068004 R 582899 CDS YP_003757086.1 300024475 9388883 complement(3068487..3068882) 1 NC_014313.1 KEGG: ppw:PputW619_3937 hypothetical protein; hypothetical protein 3068882 9388883 Hden_2970 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757086.1 3068487 R 582899 CDS YP_003757087.1 300024476 9388884 complement(3068969..3069484) 1 NC_014313.1 TIGRFAM: phage protein, HK97 gp10 family; KEGG: ppw:PputW619_3938 HK97 family phage protein; phage protein, HK97 gp10 family 3069484 9388884 Hden_2971 Hyphomicrobium denitrificans ATCC 51888 phage protein, HK97 gp10 family YP_003757087.1 3068969 R 582899 CDS YP_003757088.1 300024477 9388885 complement(3069481..3069816) 1 NC_014313.1 KEGG: vap:Vapar_2478 head-tail adaptor protein; TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; phage head-tail adaptor 3069816 9388885 Hden_2972 Hyphomicrobium denitrificans ATCC 51888 phage head-tail adaptor YP_003757088.1 3069481 R 582899 CDS YP_003757089.1 300024478 9388886 complement(3069816..3070391) 1 NC_014313.1 KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein; phiE125 gp8 hypothetical protein 3070391 9388886 Hden_2973 Hyphomicrobium denitrificans ATCC 51888 phiE125 gp8 hypothetical protein YP_003757089.1 3069816 R 582899 CDS YP_003757090.1 300024479 9388887 complement(3070395..3070772) 1 NC_014313.1 KEGG: zro:ZYRO0G05214g hypothetical protein; hypothetical protein 3070772 9388887 Hden_2974 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757090.1 3070395 R 582899 CDS YP_003757091.1 300024480 9388888 complement(3070804..3071217) 1 NC_014313.1 KEGG: smd:Smed_1328 hypothetical protein; hypothetical protein 3071217 9388888 Hden_2975 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757091.1 3070804 R 582899 CDS YP_003757092.1 300024481 9388889 complement(3071259..3071735) 1 NC_014313.1 KEGG: cfa:484298 SAPS domain family, member 1; hypothetical protein 3071735 9388889 Hden_2976 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757092.1 3071259 R 582899 CDS YP_003757093.1 300024482 9388890 complement(3071853..3072305) 1 NC_014313.1 KEGG: mpt:Mpe_A0539 hypothetical protein; hypothetical protein 3072305 9388890 Hden_2977 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757093.1 3071853 R 582899 CDS YP_003757094.1 300024483 9388891 complement(3072409..3073911) 1 NC_014313.1 KEGG: rpe:RPE_1908 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; phage major capsid protein, HK97 family 3073911 9388891 Hden_2978 Hyphomicrobium denitrificans ATCC 51888 phage major capsid protein, HK97 family YP_003757094.1 3072409 R 582899 CDS YP_003757095.1 300024484 9388892 complement(3073958..3074572) 1 NC_014313.1 KEGG: sit:TM1040_1060 peptidase U35, phage prohead HK97; TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease HK97 family 3074572 9388892 Hden_2979 Hyphomicrobium denitrificans ATCC 51888 phage prohead protease HK97 family YP_003757095.1 3073958 R 582899 CDS YP_003757096.1 300024485 9388893 complement(3074608..3075441) 1 NC_014313.1 KEGG: bmv:BMASAVP1_0977 hypothetical protein; hypothetical protein 3075441 9388893 Hden_2980 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757096.1 3074608 R 582899 CDS YP_003757097.1 300024486 9388894 complement(3075464..3075742) 1 NC_014313.1 KEGG: pno:SNOG_03883 hypothetical protein; hypothetical protein 3075742 9388894 Hden_2981 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757097.1 3075464 R 582899 CDS YP_003757098.1 300024487 9388895 complement(3075724..3075996) 1 NC_014313.1 KEGG: gbm:Gbem_0197 hypothetical protein; hypothetical protein 3075996 9388895 Hden_2982 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757098.1 3075724 R 582899 CDS YP_003757099.1 300024488 9388896 complement(3075993..3077339) 1 NC_014313.1 KEGG: dvl:Dvul_0869 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family 3077339 9388896 Hden_2983 Hyphomicrobium denitrificans ATCC 51888 phage portal protein, HK97 family YP_003757099.1 3075993 R 582899 CDS YP_003757100.1 300024489 9388897 complement(3077362..3079074) 1 NC_014313.1 PFAM: terminase; KEGG: bcm:Bcenmc03_1289 terminase; terminase 3079074 9388897 Hden_2984 Hyphomicrobium denitrificans ATCC 51888 terminase YP_003757100.1 3077362 R 582899 CDS YP_003757101.1 300024490 9388898 complement(3079085..3079678) 1 NC_014313.1 KEGG: smd:Smed_1338 P27 family phage terminase small subunit; hypothetical protein 3079678 9388898 Hden_2985 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757101.1 3079085 R 582899 CDS YP_003757102.1 300024491 9388899 complement(3079819..3080208) 1 NC_014313.1 KEGG: pic:PICST_83083 hypothetical protein; hypothetical protein 3080208 9388899 Hden_2986 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757102.1 3079819 R 582899 CDS YP_003757103.1 300024492 9388900 complement(3080212..3080604) 1 NC_014313.1 KEGG: nwi:Nwi_1548 hypothetical protein; manually curated; SMART: HNH nuclease; HNH nuclease 3080604 9388900 Hden_2987 Hyphomicrobium denitrificans ATCC 51888 HNH nuclease YP_003757103.1 3080212 R 582899 CDS YP_003757104.1 300024493 9388901 complement(3080903..3081349) 1 NC_014313.1 KEGG: pap:PSPA7_2885 transcriptional regulator; hypothetical protein 3081349 9388901 Hden_2988 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757104.1 3080903 R 582899 CDS YP_003757105.1 300024494 9388902 complement(3081349..3081678) 1 NC_014313.1 PFAM: hypothetical protein; KEGG: bpt:Bpet0961 hypothetical protein; hypothetical protein 3081678 9388902 Hden_2989 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757105.1 3081349 R 582899 CDS YP_003757106.1 300024495 9388903 3082212..3082442 1 NC_014313.1 KEGG: sil:SPOA0436 alpha/beta fold family hydrolase; hypothetical protein 3082442 9388903 Hden_2990 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757106.1 3082212 D 582899 CDS YP_003757107.1 300024496 9388904 3082748..3083959 1 NC_014313.1 KEGG: cre:CHLREDRAFT_150664 RING hypothetical protein; hypothetical protein 3083959 9388904 Hden_2991 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757107.1 3082748 D 582899 CDS YP_003757108.1 300024497 9388905 complement(3084060..3084296) 1 NC_014313.1 KEGG: afn:Acfer_0837 hypothetical protein; hypothetical protein 3084296 9388905 Hden_2992 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757108.1 3084060 R 582899 CDS YP_003757109.1 300024498 9388906 complement(3084416..3084925) 1 NC_014313.1 KEGG: tca:662157 similar to CG1303-PA; hypothetical protein 3084925 9388906 Hden_2993 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757109.1 3084416 R 582899 CDS YP_003757110.1 300024499 9388907 complement(3085026..3085640) 1 NC_014313.1 KEGG: tcu:Tcur_2837 kinetoplast-associated protein-like protein; hypothetical protein 3085640 9388907 Hden_2994 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757110.1 3085026 R 582899 CDS YP_003757111.1 300024500 9388908 complement(3085652..3086128) 1 NC_014313.1 KEGG: mkm:Mkms_5935 hypothetical protein; hypothetical protein 3086128 9388908 Hden_2995 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757111.1 3085652 R 582899 CDS YP_003757112.1 300024501 9388909 complement(3086125..3086580) 1 NC_014313.1 KEGG: rlt:Rleg2_3568 hypothetical protein; hypothetical protein 3086580 9388909 Hden_2996 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757112.1 3086125 R 582899 CDS YP_003757113.1 300024502 9388910 complement(3086577..3086960) 1 NC_014313.1 KEGG: nmg:Nmag_3240 pyrrolo-quinoline quinone; hypothetical protein 3086960 9388910 Hden_2997 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757113.1 3086577 R 582899 CDS YP_003757114.1 300024503 9388911 complement(3087118..3087393) 1 NC_014313.1 KEGG: kfl:Kfla_3820 hypothetical protein; hypothetical protein 3087393 9388911 Hden_2998 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757114.1 3087118 R 582899 CDS YP_003757115.1 300024504 9388912 complement(3087390..3087659) 1 NC_014313.1 KEGG: afw:Anae109_0602 regulatory protein ArsR; transcriptional regulator 3087659 9388912 Hden_2999 Hyphomicrobium denitrificans ATCC 51888 transcriptional regulator YP_003757115.1 3087390 R 582899 CDS YP_003757116.1 300024505 9388913 complement(3087659..3088006) 1 NC_014313.1 KEGG: xcb:XC_2014 hypothetical protein; hypothetical protein 3088006 9388913 Hden_3000 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757116.1 3087659 R 582899 CDS YP_003757117.1 300024506 9388914 complement(3088003..3088881) 1 NC_014313.1 KEGG: xau:Xaut_3623 hypothetical protein; hypothetical protein 3088881 9388914 Hden_3001 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757117.1 3088003 R 582899 CDS YP_003757118.1 300024507 9388915 complement(3088887..3089399) 1 NC_014313.1 KEGG: htu:Htur_3193 RecA-superfamily ATPase implicated in signal transduction-like protein; hypothetical protein 3089399 9388915 Hden_3002 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757118.1 3088887 R 582899 CDS YP_003757119.1 300024508 9388916 complement(3089396..3089641) 1 NC_014313.1 hypothetical protein 3089641 9388916 Hden_3003 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757119.1 3089396 R 582899 CDS YP_003757120.1 300024509 9388917 complement(3089641..3090021) 1 NC_014313.1 KEGG: bta:785824 hypothetical protein LOC785824; hypothetical protein 3090021 9388917 Hden_3004 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757120.1 3089641 R 582899 CDS YP_003757121.1 300024510 9388918 complement(3090041..3090724) 1 NC_014313.1 KEGG: sbi:SORBI_02g043560 hypothetical protein; hypothetical protein 3090724 9388918 Hden_3005 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757121.1 3090041 R 582899 CDS YP_003757122.1 300024511 9388919 complement(3090721..3090984) 1 NC_014313.1 hypothetical protein 3090984 9388919 Hden_3006 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757122.1 3090721 R 582899 CDS YP_003757123.1 300024512 9388920 complement(3090981..3091247) 1 NC_014313.1 KEGG: FHA domain-containing protein; hypothetical protein 3091247 9388920 Hden_3007 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757123.1 3090981 R 582899 CDS YP_003757124.1 300024513 9388921 complement(3091297..3091689) 1 NC_014313.1 PFAM: protein of unknown function DUF2312; KEGG: pzu:PHZ_c3117 hypothetical protein; hypothetical protein 3091689 9388921 Hden_3008 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757124.1 3091297 R 582899 CDS YP_003757125.1 300024514 9388922 complement(3091689..3092144) 1 NC_014313.1 KEGG: prw:PsycPRwf_0036 pseudouridine synthase; hypothetical protein 3092144 9388922 Hden_3009 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757125.1 3091689 R 582899 CDS YP_003757126.1 300024515 9388923 complement(3092160..3093911) 1 NC_014313.1 KEGG: pfs:pQBR0371 helicase; PFAM: SNF2-related protein; SMART: DEAD-like helicase; SNF2-like protein 3093911 9388923 Hden_3010 Hyphomicrobium denitrificans ATCC 51888 SNF2-like protein YP_003757126.1 3092160 R 582899 CDS YP_003757127.1 300024516 9388924 complement(3093908..3094708) 1 NC_014313.1 KEGG: mag:amb2052 hypothetical protein; hypothetical protein 3094708 9388924 Hden_3011 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757127.1 3093908 R 582899 CDS YP_003757128.1 300024517 9388925 complement(3094705..3095061) 1 NC_014313.1 KEGG: pfs:pQBR0370 hypothetical protein; hypothetical protein 3095061 9388925 Hden_3012 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757128.1 3094705 R 582899 CDS YP_003757129.1 300024518 9388926 complement(3095058..3095672) 1 NC_014313.1 PFAM: MT-A70 family protein; KEGG: rsh:Rsph17029_0660 MT-A70 family protein; MT-A70 family protein 3095672 9388926 Hden_3013 Hyphomicrobium denitrificans ATCC 51888 MT-A70 family protein YP_003757129.1 3095058 R 582899 CDS YP_003757130.1 300024519 9388927 complement(3095669..3096037) 1 NC_014313.1 KEGG: sgr:SGR_4109 L-aspartate oxidase; hypothetical protein 3096037 9388927 Hden_3014 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757130.1 3095669 R 582899 CDS YP_003757131.1 300024520 9388928 complement(3096034..3097680) 1 NC_014313.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: slt:Slit_1955 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase 3097680 9388928 Hden_3015 Hyphomicrobium denitrificans ATCC 51888 C-5 cytosine-specific DNA methylase YP_003757131.1 3096034 R 582899 CDS YP_003757132.1 300024521 9388929 complement(3097677..3097883) 1 NC_014313.1 KEGG: ank:AnaeK_1326 integrase catalytic region; hypothetical protein 3097883 9388929 Hden_3016 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757132.1 3097677 R 582899 CDS YP_003757133.1 300024522 9388930 complement(3097880..3098101) 1 NC_014313.1 KEGG: ptr:737498 transmembrane and ubiquitin-like domain containing 1; transmembrane and ubiquitin-like domain containing 1 3098101 9388930 Hden_3017 Hyphomicrobium denitrificans ATCC 51888 transmembrane and ubiquitin-like domain containing 1 YP_003757133.1 3097880 R 582899 CDS YP_003757134.1 300024523 9388931 complement(3098105..3098383) 1 NC_014313.1 KEGG: xau:Xaut_4514 hypothetical protein; hypothetical protein 3098383 9388931 Hden_3018 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757134.1 3098105 R 582899 CDS YP_003757135.1 300024524 9388932 complement(3098380..3098544) 1 NC_014313.1 hypothetical protein 3098544 9388932 Hden_3019 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757135.1 3098380 R 582899 CDS YP_003757136.1 300024525 9388933 complement(3098541..3098798) 1 NC_014313.1 KEGG: maq:Maqu_0118 hypothetical protein; hypothetical protein 3098798 9388933 Hden_3020 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757136.1 3098541 R 582899 CDS YP_003757137.1 300024526 9388934 complement(3098795..3099082) 1 NC_014313.1 KEGG: sco:SCO1278 ATP/GTP-binding protein; hypothetical protein 3099082 9388934 Hden_3021 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757137.1 3098795 R 582899 CDS YP_003757138.1 300024527 9388935 complement(3099079..3099477) 1 NC_014313.1 KEGG: bbt:BBta_p0172 carbamoyltransferase HypF; hypothetical protein 3099477 9388935 Hden_3022 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757138.1 3099079 R 582899 CDS YP_003757139.1 300024528 9388936 complement(3099474..3100268) 1 NC_014313.1 manually curated; KEGG: mrd:Mrad2831_0002 chromosomal replication initiation protein; hypothetical protein 3100268 9388936 Hden_3023 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757139.1 3099474 R 582899 CDS YP_003757140.1 300024529 9388937 complement(3100461..3101255) 1 NC_014313.1 KEGG: dwi:Dwil_GK10250 GK10250 gene product from transcript GK10250-RA; hypothetical protein 3101255 9388937 Hden_3024 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757140.1 3100461 R 582899 CDS YP_003757141.1 300024530 9388938 3101406..3101540 1 NC_014313.1 hypothetical protein 3101540 9388938 Hden_3025 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757141.1 3101406 D 582899 CDS YP_003757142.1 300024531 9388939 3101714..3102328 1 NC_014313.1 KEGG: sjp:SJA_C1-26300 phage repressor; XRE family transcriptional regulator 3102328 9388939 Hden_3026 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003757142.1 3101714 D 582899 CDS YP_003757143.1 300024532 9388940 complement(3102321..3102998) 1 NC_014313.1 KEGG: mno:Mnod_1018 exonuclease RNase T and DNA polymerase III; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; exonuclease RNase T and DNA polymerase III 3102998 9388940 Hden_3027 Hyphomicrobium denitrificans ATCC 51888 exonuclease RNase T and DNA polymerase III YP_003757143.1 3102321 R 582899 CDS YP_003757144.1 300024533 9388941 3103075..3103368 1 NC_014313.1 KEGG: gau:GAU_0855 DNA-directed RNA polymerase beta subunit; hypothetical protein 3103368 9388941 Hden_3028 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757144.1 3103075 D 582899 CDS YP_003757145.1 300024534 9388942 3103365..3103742 1 NC_014313.1 KEGG: pmo:Pmob_0407 DNA methylase N-4/N-6 domain-containing protein; hypothetical protein 3103742 9388942 Hden_3029 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757145.1 3103365 D 582899 CDS YP_003757146.1 300024535 9388943 3103739..3103978 1 NC_014313.1 KEGG: fre:Franean1_0635 hypothetical protein; hypothetical protein 3103978 9388943 Hden_3030 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757146.1 3103739 D 582899 CDS YP_003757147.1 300024536 9388944 3103975..3104673 1 NC_014313.1 PFAM: porin; KEGG: mlo:mll1390 outer membrane protein; porin 3104673 9388944 Hden_3031 Hyphomicrobium denitrificans ATCC 51888 porin YP_003757147.1 3103975 D 582899 CDS YP_003757148.1 300024537 9388945 3104883..3106472 1 NC_014313.1 PFAM: Resolvase domain; Recombinase; KEGG: nha:Nham_3864 recombinase; resolvase 3106472 9388945 Hden_3032 Hyphomicrobium denitrificans ATCC 51888 resolvase YP_003757148.1 3104883 D 582899 CDS YP_003757149.1 300024538 9388947 3107074..3107331 1 NC_014313.1 hypothetical protein 3107331 9388947 Hden_3033 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757149.1 3107074 D 582899 CDS YP_003757150.1 300024539 9388948 complement(3107411..3107632) 1 NC_014313.1 hypothetical protein 3107632 9388948 Hden_3034 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757150.1 3107411 R 582899 CDS YP_003757151.1 300024540 9388949 complement(3107713..3107862) 1 NC_014313.1 KEGG: sma:SAV_4393 integral membrane protein; hypothetical protein 3107862 9388949 Hden_3035 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757151.1 3107713 R 582899 CDS YP_003757152.1 300024541 9388950 complement(3107905..3108588) 1 NC_014313.1 SMART: ATPase AAA; KEGG: nmu:Nmul_D2816 plasmid partition protein ParA-like; ATPase AAA 3108588 9388950 Hden_3036 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003757152.1 3107905 R 582899 CDS YP_003757153.1 300024542 9388951 complement(3108814..3109359) 1 NC_014313.1 KEGG: hoh:Hoch_4667 hypothetical protein; hypothetical protein 3109359 9388951 Hden_3037 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757153.1 3108814 R 582899 CDS YP_003757154.1 300024543 9388952 complement(3109902..3110747) 1 NC_014313.1 TIGRFAM: lytic murein transglycosylase; KEGG: bra:BRADO4023 transglycolase; lytic murein transglycosylase 3110747 9388952 Hden_3038 Hyphomicrobium denitrificans ATCC 51888 lytic murein transglycosylase YP_003757154.1 3109902 R 582899 CDS YP_003757155.1 300024544 9388953 complement(3110780..3111181) 1 NC_014313.1 KEGG: ppa:PAS_chr4_0618 One of two type I myosins; hypothetical protein 3111181 9388953 Hden_3039 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757155.1 3110780 R 582899 CDS YP_003757156.1 300024545 9388954 complement(3111403..3111720) 1 NC_014313.1 KEGG: rpf:Rpic12D_1070 hypothetical protein; hypothetical protein 3111720 9388954 Hden_3040 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757156.1 3111403 R 582899 CDS YP_003757157.1 300024546 9388955 3112168..3112635 1 NC_014313.1 KEGG: bpt:Bpet0307 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 3112635 9388955 Hden_3041 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003757157.1 3112168 D 582899 CDS YP_003757158.1 300024547 9388956 complement(3112651..3114075) 1 NC_014313.1 PFAM: dihydropteroate synthase DHPS; KEGG: xau:Xaut_4100 dihydropteroate synthase DhpS; dihydropteroate synthase DHPS 3114075 9388956 Hden_3042 Hyphomicrobium denitrificans ATCC 51888 dihydropteroate synthase DHPS YP_003757158.1 3112651 R 582899 CDS YP_003757159.1 300024548 9388957 3114221..3114985 1 NC_014313.1 TIGRFAM: precorrin-6A synthase (deacetylating); KEGG: pfo:Pfl01_2061 precorrin 6A synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6A synthase 3114985 9388957 Hden_3043 Hyphomicrobium denitrificans ATCC 51888 precorrin-6A synthase YP_003757159.1 3114221 D 582899 CDS YP_003757160.1 300024549 9388958 complement(3114987..3115904) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azl:AZL_c04930 transcriptional regulator; LysR family transcriptional regulator 3115904 9388958 Hden_3044 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003757160.1 3114987 R 582899 CDS YP_003757161.1 300024550 9388959 3116019..3116618 1 NC_014313.1 KEGG: met:M446_2368 flavoprotein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; flavoprotein WrbA 3116618 9388959 Hden_3045 Hyphomicrobium denitrificans ATCC 51888 flavoprotein WrbA YP_003757161.1 3116019 D 582899 CDS YP_003757162.1 300024551 9388960 3116745..3117680 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll3247 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3117680 9388960 Hden_3046 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003757162.1 3116745 D 582899 CDS YP_003757163.1 300024552 9388961 3117677..3118318 1 NC_014313.1 PFAM: phospholipase/carboxylesterase; KEGG: sru:SRU_2742 phospholipase/carboxylesterase; phospholipase/carboxylesterase 3118318 9388961 Hden_3047 Hyphomicrobium denitrificans ATCC 51888 phospholipase/carboxylesterase YP_003757163.1 3117677 D 582899 CDS YP_003757164.1 300024553 9388962 3118323..3118961 1 NC_014313.1 KEGG: mms:mma_2479 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 3118961 9388962 Hden_3048 Hyphomicrobium denitrificans ATCC 51888 flavin reductase YP_003757164.1 3118323 D 582899 CDS YP_003757165.1 300024554 9388963 complement(3118964..3120484) 1 NC_014313.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: reh:H16_B0945 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3120484 9388963 Hden_3049 Hyphomicrobium denitrificans ATCC 51888 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003757165.1 3118964 R 582899 CDS YP_003757166.1 300024555 9388964 complement(3120505..3121032) 1 NC_014313.1 PFAM: ferritin; KEGG: rlt:Rleg2_4342 ferritin Dps family protein; ferritin 3121032 9388964 Hden_3050 Hyphomicrobium denitrificans ATCC 51888 ferritin YP_003757166.1 3120505 R 582899 CDS YP_003757167.1 300024556 9388965 complement(3121399..3122565) 1 NC_014313.1 KEGG: msl:Msil_0130 ceramide glucosyltransferase; Ceramide glucosyltransferase 3122565 9388965 Hden_3051 Hyphomicrobium denitrificans ATCC 51888 Ceramide glucosyltransferase YP_003757167.1 3121399 R 582899 CDS YP_003757168.1 300024557 9388966 complement(3122688..3122951) 1 NC_014313.1 KEGG: mem:Memar_0248 hypothetical protein; hypothetical protein 3122951 9388966 Hden_3052 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757168.1 3122688 R 582899 CDS YP_003757169.1 300024558 9388967 complement(3123185..3123364) 1 NC_014313.1 hypothetical protein 3123364 9388967 Hden_3053 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757169.1 3123185 R 582899 CDS YP_003757170.1 300024559 9388968 complement(3123361..3123621) 1 NC_014313.1 KEGG: nwi:Nwi_2991 hypothetical protein; hypothetical protein 3123621 9388968 Hden_3054 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757170.1 3123361 R 582899 CDS YP_003757171.1 300024560 9388969 3124018..3125349 1 NC_014313.1 TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pzu:PHZ_c2961 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation; nucleotide sugar dehydrogenase 3125349 9388969 Hden_3055 Hyphomicrobium denitrificans ATCC 51888 nucleotide sugar dehydrogenase YP_003757171.1 3124018 D 582899 CDS YP_003757172.1 300024561 9388970 3125560..3127653 1 NC_014313.1 KEGG: msl:Msil_0049 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 3127653 9388970 Hden_3056 Hyphomicrobium denitrificans ATCC 51888 flagellar biosynthesis protein FlhA YP_003757172.1 3125560 D 582899 CDS YP_003757173.1 300024562 9388971 3127650..3128414 1 NC_014313.1 PFAM: type III secretion system inner membrane R protein; KEGG: bid:Bind_3589 flagellar biosynthesis protein FliR; type III secretion system inner membrane R protein 3128414 9388971 Hden_3057 Hyphomicrobium denitrificans ATCC 51888 type III secretion system inner membrane R protein YP_003757173.1 3127650 D 582899 CDS YP_003757174.1 300024563 9388972 3128407..3128823 1 NC_014313.1 KEGG: rlg:Rleg_0379 hypothetical protein; hypothetical protein 3128823 9388972 Hden_3058 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757174.1 3128407 D 582899 CDS YP_003757175.1 300024564 9388973 3128857..3129213 1 NC_014313.1 PFAM: flagellar protein FlgJ-like; KEGG: bja:bll6849 hypothetical protein; flagellar protein FlgJ-like protein 3129213 9388973 Hden_3059 Hyphomicrobium denitrificans ATCC 51888 flagellar protein FlgJ-like protein YP_003757175.1 3128857 D 582899 CDS YP_003757176.1 300024565 9388974 3129215..3129706 1 NC_014313.1 KEGG: mes:Meso_0268 hypothetical protein; hypothetical protein 3129706 9388974 Hden_3060 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757176.1 3129215 D 582899 CDS YP_003757177.1 300024566 9388975 3129703..3130170 1 NC_014313.1 KEGG: mno:Mnod_6732 hypothetical protein; hypothetical protein 3130170 9388975 Hden_3061 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757177.1 3129703 D 582899 CDS YP_003757178.1 300024567 9388976 3130154..3130720 1 NC_014313.1 KEGG: msl:Msil_0055 hypothetical protein; hypothetical protein 3130720 9388976 Hden_3062 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757178.1 3130154 D 582899 CDS YP_003757179.1 300024568 9388977 complement(3130737..3131135) 1 NC_014313.1 KEGG: msl:Msil_1440 hypothetical protein; hypothetical protein 3131135 9388977 Hden_3063 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757179.1 3130737 R 582899 CDS YP_003757180.1 300024569 9388978 complement(3131160..3131708) 1 NC_014313.1 PFAM: CheD family protein; KEGG: ara:Arad_0855 chemoreceptor glutamine deamidase CheD; stimulates methylation of MCP proteins; chemotaxis protein CheD 3131708 9388978 Hden_3064 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheD YP_003757180.1 3131160 R 582899 CDS YP_003757181.1 300024570 9388979 complement(3131705..3132094) 1 NC_014313.1 KEGG: bid:Bind_3627 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3132094 9388979 Hden_3065 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003757181.1 3131705 R 582899 CDS YP_003757182.1 300024571 9388980 complement(3132104..3133153) 1 NC_014313.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: pzu:PHZ_c3376 chemotaxis-specific methylesterase; SMART: response regulator receiver; chemotaxis protein CheB 3133153 9388980 Hden_3066 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheB YP_003757182.1 3132104 R 582899 CDS YP_003757183.1 300024572 9388981 complement(3133150..3134040) 1 NC_014313.1 PFAM: MCP methyltransferase CheR-type; KEGG: acr:Acry_2710 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR 3134040 9388981 Hden_3067 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheR YP_003757183.1 3133150 R 582899 CDS YP_003757184.1 300024573 9388982 complement(3134037..3134504) 1 NC_014313.1 KEGG: msl:Msil_1445 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 3134504 9388982 Hden_3068 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheW YP_003757184.1 3134037 R 582899 CDS YP_003757185.1 300024574 9388983 complement(3134510..3136684) 1 NC_014313.1 KEGG: acr:Acry_2708 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheA 3136684 9388983 Hden_3069 Hyphomicrobium denitrificans ATCC 51888 chemotaxis protein CheA YP_003757185.1 3134510 R 582899 CDS YP_003757186.1 300024575 9388984 complement(3136709..3137071) 1 NC_014313.1 KEGG: response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3137071 9388984 Hden_3070 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003757186.1 3136709 R 582899 CDS YP_003757187.1 300024576 9388985 complement(3137071..3137526) 1 NC_014313.1 KEGG: virus protein; hypothetical protein 3137526 9388985 Hden_3071 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757187.1 3137071 R 582899 CDS YP_003757188.1 300024577 9388986 complement(3137526..3139856) 1 NC_014313.1 KEGG: pzu:PHZ_c3382 methyl-accepting chemotaxis protein McpA; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 3139856 9388986 Hden_3072 Hyphomicrobium denitrificans ATCC 51888 methyl-accepting chemotaxis sensory transducer YP_003757188.1 3137526 R 582899 CDS YP_003757189.1 300024578 9388987 complement(3140360..3140650) 1 NC_014313.1 KEGG: mpo:Mpop_0517 hypothetical protein; manually curated; PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3140650 9388987 Hden_3073 Hyphomicrobium denitrificans ATCC 51888 type IV pilus assembly PilZ YP_003757189.1 3140360 R 582899 CDS YP_003757190.1 300024579 9388988 3140957..3142672 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; KEGG: mch:Mchl_3001 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate phosphodiesterase 3142672 9388988 Hden_3074 Hyphomicrobium denitrificans ATCC 51888 diguanylate phosphodiesterase YP_003757190.1 3140957 D 582899 CDS YP_003757191.1 300024580 9388989 3142730..3143593 1 NC_014313.1 PFAM: type IV pilus assembly PilZ; KEGG: swi:Swit_3968 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); type IV pilus assembly PilZ 3143593 9388989 Hden_3075 Hyphomicrobium denitrificans ATCC 51888 type IV pilus assembly PilZ YP_003757191.1 3142730 D 582899 CDS YP_003757192.1 300024581 9388990 complement(3143645..3144760) 1 NC_014313.1 SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: bra:BRADO3548 hypothetical protein; PFAM: GGDEF domain containing protein; diguanylate cyclase 3144760 9388990 Hden_3076 Hyphomicrobium denitrificans ATCC 51888 diguanylate cyclase YP_003757192.1 3143645 R 582899 CDS YP_003757193.1 300024582 9388991 complement(3144940..3145209) 1 NC_014313.1 KEGG: azc:AZC_0653 flagellar biosynthesis protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein FliQ 3145209 9388991 Hden_3077 Hyphomicrobium denitrificans ATCC 51888 flagellar biosynthetic protein FliQ YP_003757193.1 3144940 R 582899 CDS YP_003757194.1 300024583 9388992 complement(3145206..3145616) 1 NC_014313.1 PFAM: flagellar hook capping protein; KEGG: bid:Bind_3552 flagellar basal body rod modification protein; flagellar hook capping protein 3145616 9388992 Hden_3078 Hyphomicrobium denitrificans ATCC 51888 flagellar hook capping protein YP_003757194.1 3145206 R 582899 CDS YP_003757195.1 300024584 9388993 complement(3145613..3146029) 1 NC_014313.1 PFAM: flagellar FlbT family protein; KEGG: met:M446_6510 flagellar biosynthesis repressor FlbT; flagellar FlbT family protein 3146029 9388993 Hden_3079 Hyphomicrobium denitrificans ATCC 51888 flagellar FlbT family protein YP_003757195.1 3145613 R 582899 CDS YP_003757196.1 300024585 9388994 complement(3146029..3146373) 1 NC_014313.1 PFAM: flagellar FlaF family protein; KEGG: mes:Meso_0276 flagellar biosynthesis regulatory protein FlaF; flagellar FlaF family protein 3146373 9388994 Hden_3080 Hyphomicrobium denitrificans ATCC 51888 flagellar FlaF family protein YP_003757196.1 3146029 R 582899 CDS YP_003757197.1 300024586 9388995 complement(3146413..3147468) 1 NC_014313.1 PFAM: flagellar hook-associated 3 family protein; KEGG: bid:Bind_3555 flagellar hook-associated protein FlgL; flagellar hook-associated 3 family protein 3147468 9388995 Hden_3081 Hyphomicrobium denitrificans ATCC 51888 flagellar hook-associated 3 family protein YP_003757197.1 3146413 R 582899 CDS YP_003757198.1 300024587 9388996 complement(3147473..3148936) 1 NC_014313.1 KEGG: bja:bll6857 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar hook-associated protein FlgK 3148936 9388996 Hden_3082 Hyphomicrobium denitrificans ATCC 51888 flagellar hook-associated protein FlgK YP_003757198.1 3147473 R 582899 CDS YP_003757199.1 300024588 9388997 complement(3148965..3150218) 1 NC_014313.1 KEGG: mlo:mlr2937 flagellar hook protein FlgE; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-basal body protein 3150218 9388997 Hden_3083 Hyphomicrobium denitrificans ATCC 51888 flagellar hook-basal body protein YP_003757199.1 3148965 R 582899 CDS YP_003757200.1 300024589 9388998 complement(3150163..3150993) 1 NC_014313.1 KEGG: ara:Arad_0907 two-component response regulator protein; PFAM: transcriptional regulator; SMART: transcriptional regulator domain protein; winged helix family two component transcriptional regulator 3150993 9388998 Hden_3084 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003757200.1 3150163 R 582899 CDS YP_003757201.1 300024590 9388999 3151326..3151742 1 NC_014313.1 PFAM: type IV pilus assembly PilZ; KEGG: swi:Swit_3968 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); type IV pilus assembly PilZ 3151742 9388999 Hden_3085 Hyphomicrobium denitrificans ATCC 51888 type IV pilus assembly PilZ YP_003757201.1 3151326 D 582899 CDS YP_003757202.1 300024591 9389000 3151822..3152265 1 NC_014313.1 SMART: heat shock protein DnaJ domain protein; KEGG: bmb:BruAb1_0098 hypothetical protein; heat shock protein DnaJ domain-containing protein 3152265 9389000 Hden_3086 Hyphomicrobium denitrificans ATCC 51888 heat shock protein DnaJ domain-containing protein YP_003757202.1 3151822 D 582899 CDS YP_003757203.1 300024592 9389001 3152383..3152655 1 NC_014313.1 KEGG: dda:Dd703_1767 histidine kinase; hypothetical protein 3152655 9389001 Hden_3087 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757203.1 3152383 D 582899 CDS YP_003757204.1 300024593 9389002 complement(3152579..3152932) 1 NC_014313.1 KEGG: ele:Elen_1721 ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; hypothetical protein 3152932 9389002 Hden_3088 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757204.1 3152579 R 582899 CDS YP_003757205.1 300024594 9389003 complement(3152944..3154428) 1 NC_014313.1 PFAM: flagellar hook-length control protein; KEGG: sme:SMc03044 chemotaxis protein (motility protein D); flagellar hook-length control protein 3154428 9389003 Hden_3089 Hyphomicrobium denitrificans ATCC 51888 flagellar hook-length control protein YP_003757205.1 3152944 R 582899 CDS YP_003757206.1 300024595 9389004 complement(3154425..3155699) 1 NC_014313.1 KEGG: azc:AZC_0624 chemotaxis protein MotC; hypothetical protein 3155699 9389004 Hden_3090 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757206.1 3154425 R 582899 CDS YP_003757207.1 300024596 9389005 complement(3155696..3156970) 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: bja:bll6862 flagellar motor protein MotB; OmpA/MotB domain-containing protein 3156970 9389005 Hden_3091 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003757207.1 3155696 R 582899 CDS YP_003757208.1 300024597 9389006 complement(3156967..3157554) 1 NC_014313.1 KEGG: met:M446_3224 hypothetical protein; hypothetical protein 3157554 9389006 Hden_3092 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757208.1 3156967 R 582899 CDS YP_003757209.1 300024598 9389007 complement(3157551..3159236) 1 NC_014313.1 KEGG: met:M446_3225 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; flagellar M-ring protein FliF 3159236 9389007 Hden_3093 Hyphomicrobium denitrificans ATCC 51888 flagellar M-ring protein FliF YP_003757209.1 3157551 R 582899 CDS YP_003757210.1 300024599 9389008 complement(3159414..3160367) 1 NC_014313.1 PFAM: flagellin domain protein; KEGG: rpe:RPE_1165 flagellin; flagellin domain-containing protein 3160367 9389008 Hden_3094 Hyphomicrobium denitrificans ATCC 51888 flagellin domain-containing protein YP_003757210.1 3159414 R 582899 CDS YP_003757211.1 300024600 9389009 complement(3160587..3161330) 1 NC_014313.1 KEGG: bja:bll6867 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 3161330 9389009 Hden_3095 Hyphomicrobium denitrificans ATCC 51888 flagellar biosynthetic protein FliP YP_003757211.1 3160587 R 582899 CDS YP_003757212.1 300024601 9389010 complement(3161327..3161839) 1 NC_014313.1 PFAM: flagellar basal body-associated protein FliL; KEGG: azc:AZC_0629 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 3161839 9389010 Hden_3096 Hyphomicrobium denitrificans ATCC 51888 flagellar basal body-associated protein FliL YP_003757212.1 3161327 R 582899 CDS YP_003757213.1 300024602 9389011 complement(3161852..3162592) 1 NC_014313.1 PFAM: flagellar L-ring protein; KEGG: msl:Msil_0031 flagellar L-ring protein; flagellar L-ring protein 3162592 9389011 Hden_3097 Hyphomicrobium denitrificans ATCC 51888 flagellar L-ring protein YP_003757213.1 3161852 R 582899 CDS YP_003757214.1 300024603 9389012 complement(3162576..3163181) 1 NC_014313.1 KEGG: bja:bll6870 hypothetical protein; hypothetical protein 3163181 9389012 Hden_3098 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757214.1 3162576 R 582899 CDS YP_003757215.1 300024604 9389013 complement(3163178..3164281) 1 NC_014313.1 PFAM: flagellar P-ring protein; KEGG: bja:bll6871 flagellar basal body P-ring protein; flagellar P-ring protein 3164281 9389013 Hden_3099 Hyphomicrobium denitrificans ATCC 51888 flagellar P-ring protein YP_003757215.1 3163178 R 582899 CDS YP_003757216.1 300024605 9389014 complement(3164278..3164739) 1 NC_014313.1 TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mes:Meso_0294 flagellar protein FlgA; SMART: SAF domain protein; flagella basal body P-ring formation protein FlgA 3164739 9389014 Hden_3100 Hyphomicrobium denitrificans ATCC 51888 flagella basal body P-ring formation protein FlgA YP_003757216.1 3164278 R 582899 CDS YP_003757217.1 300024606 9389015 complement(3164736..3165524) 1 NC_014313.1 KEGG: rhi:NGR_c02770 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG 3165524 9389015 Hden_3101 Hyphomicrobium denitrificans ATCC 51888 flagellar basal-body rod protein FlgG YP_003757217.1 3164736 R 582899 CDS YP_003757218.1 300024607 9389016 complement(3165536..3165862) 1 NC_014313.1 PFAM: flagellar hook-basal body complex protein FliE; KEGG: azc:AZC_0635 flagellar hook-basal body protein FliE; flagellar hook-basal body complex protein FliE 3165862 9389016 Hden_3102 Hyphomicrobium denitrificans ATCC 51888 flagellar hook-basal body complex protein FliE YP_003757218.1 3165536 R 582899 CDS YP_003757219.1 300024608 9389017 complement(3165859..3166278) 1 NC_014313.1 KEGG: msl:Msil_0025 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgC 3166278 9389017 Hden_3103 Hyphomicrobium denitrificans ATCC 51888 flagellar basal-body rod protein FlgC YP_003757219.1 3165859 R 582899 CDS YP_003757220.1 300024609 9389018 complement(3166281..3166658) 1 NC_014313.1 PFAM: flagellar basal body rod protein; KEGG: rpc:RPC_1094 flagellar basal body rod protein FlgB; flagellar basal body rod protein 3166658 9389018 Hden_3104 Hyphomicrobium denitrificans ATCC 51888 flagellar basal body rod protein YP_003757220.1 3166281 R 582899 CDS YP_003757221.1 300024610 9389019 complement(3166766..3167188) 1 NC_014313.1 KEGG: bmt:BSUIS_B0126 hypothetical protein; hypothetical protein 3167188 9389019 Hden_3105 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757221.1 3166766 R 582899 CDS YP_003757222.1 300024611 9389020 complement(3167202..3168284) 1 NC_014313.1 PFAM: type III secretion exporter; KEGG: met:M446_3217 flagellar biosynthesis protein FlhB; type III secretion exporter 3168284 9389020 Hden_3106 Hyphomicrobium denitrificans ATCC 51888 type III secretion exporter YP_003757222.1 3167202 R 582899 CDS YP_003757223.1 300024612 9389021 complement(3168308..3169318) 1 NC_014313.1 PFAM: flagellar motor switch protein FliG; KEGG: msl:Msil_0021 flagellar motor switch protein FliG; flagellar motor switch protein FliG 3169318 9389021 Hden_3107 Hyphomicrobium denitrificans ATCC 51888 flagellar motor switch protein FliG YP_003757223.1 3168308 R 582899 CDS YP_003757224.1 300024613 9389022 complement(3169328..3169750) 1 NC_014313.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: mch:Mchl_0650 flagellar motor switch protein FliN; surface presentation of antigens (SPOA) protein 3169750 9389022 Hden_3108 Hyphomicrobium denitrificans ATCC 51888 surface presentation of antigens (SPOA) protein YP_003757224.1 3169328 R 582899 CDS YP_003757225.1 300024614 9389023 complement(3169849..3170817) 1 NC_014313.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_3213 flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein 3170817 9389023 Hden_3109 Hyphomicrobium denitrificans ATCC 51888 surface presentation of antigens (SPOA) protein YP_003757225.1 3169849 R 582899 CDS YP_003757226.1 300024615 9389024 complement(3170903..3171823) 1 NC_014313.1 KEGG: mlo:mll2905 flagellar motor protein MotA; flagellar motor protein MotA 3171823 9389024 Hden_3110 Hyphomicrobium denitrificans ATCC 51888 flagellar motor protein MotA YP_003757226.1 3170903 R 582899 CDS YP_003757227.1 300024616 9389025 3171972..3172694 1 NC_014313.1 KEGG: bid:Bind_2810 flagellar basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgF 3172694 9389025 Hden_3111 Hyphomicrobium denitrificans ATCC 51888 flagellar basal-body rod protein FlgF YP_003757227.1 3171972 D 582899 CDS YP_003757228.1 300024617 9389026 3172714..3174084 1 NC_014313.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; KEGG: msl:Msil_1657 flagellum-specific ATP synthase; SMART: ATPase AAA; ATPase, FliI/YscN family 3174084 9389026 Hden_3112 Hyphomicrobium denitrificans ATCC 51888 ATPase, FliI/YscN family YP_003757228.1 3172714 D 582899 CDS YP_003757229.1 300024618 9389027 complement(3174730..3175440) 1 NC_014313.1 PFAM: glycoside hydrolase family 24; KEGG: ere:EUBREC_2755 phage-related lysozyme; glycoside hydrolase family 24 3175440 9389027 Hden_3113 Hyphomicrobium denitrificans ATCC 51888 glycoside hydrolase family 24 YP_003757229.1 3174730 R 582899 CDS YP_003757230.1 300024619 9389028 complement(3175504..3176736) 1 NC_014313.1 KEGG: rce:RC1_0504 hypothetical protein; PFAM: CBS domain containing protein; haloacid dehalogenase; SMART: CBS domain containing protein; signal transduction protein with CBS domains 3176736 9389028 Hden_3114 Hyphomicrobium denitrificans ATCC 51888 signal transduction protein with CBS domains YP_003757230.1 3175504 R 582899 CDS YP_003757231.1 300024620 9389029 complement(3176941..3177906) 1 NC_014313.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_4699 LysR family transcriptional regulator; LysR family transcriptional regulator 3177906 9389029 Hden_3115 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003757231.1 3176941 R 582899 CDS YP_003757232.1 300024621 9389030 3178024..3179283 1 NC_014313.1 KEGG: gbe:GbCGDNIH1_0177 sarcosine oxidase beta subunit; TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta family 3179283 9389030 Hden_3116 Hyphomicrobium denitrificans ATCC 51888 sarcosine oxidase subunit beta family YP_003757232.1 3178024 D 582899 CDS YP_003757233.1 300024622 9389031 3179297..3179593 1 NC_014313.1 PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: xau:Xaut_4701 sarcosine oxidase subunit delta heterotetrameric; Sarcosine oxidase subunit delta heterotetrameric 3179593 9389031 Hden_3117 Hyphomicrobium denitrificans ATCC 51888 Sarcosine oxidase subunit delta heterotetrameric YP_003757233.1 3179297 D 582899 CDS YP_003757234.1 300024623 9389032 3179590..3182574 1 NC_014313.1 KEGG: azl:AZL_a09570 sarcosine oxidase subunit alpha; TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: glycine cleavage T protein (aminomethyl transferase); HI0933 family protein; sarcosine oxidase subunit alpha family 3182574 9389032 Hden_3118 Hyphomicrobium denitrificans ATCC 51888 sarcosine oxidase subunit alpha family YP_003757234.1 3179590 D 582899 CDS YP_003757235.1 300024624 9389033 3182567..3183121 1 NC_014313.1 PFAM: Sarcosine oxidase subunit gamma; KEGG: mdi:METDI2319 sarcosine oxidase subunit gamma; Sarcosine oxidase subunit gamma 3183121 9389033 Hden_3119 Hyphomicrobium denitrificans ATCC 51888 Sarcosine oxidase subunit gamma YP_003757235.1 3182567 D 582899 CDS YP_003757236.1 300024625 9389034 3183250..3183903 1 NC_014313.1 KEGG: xau:Xaut_4694 XRE family transcriptional regulator; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator 3183903 9389034 Hden_3120 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003757236.1 3183250 D 582899 CDS YP_003757237.1 300024626 9389035 3184124..3185860 1 NC_014313.1 PFAM: sulfatase; KEGG: rpe:RPE_2198 sulfatase; sulfatase 3185860 9389035 Hden_3121 Hyphomicrobium denitrificans ATCC 51888 sulfatase YP_003757237.1 3184124 D 582899 CDS YP_003757238.1 300024627 9389036 3185985..3187157 1 NC_014313.1 KEGG: mex:Mext_1925 hypothetical protein; PFAM: domain of unknown function DUF1745; FIST C domain; SMART: domain of unknown function DUF1745; hypothetical protein 3187157 9389036 Hden_3122 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757238.1 3185985 D 582899 CDS YP_003757239.1 300024628 9389037 3187154..3188518 1 NC_014313.1 KEGG: mlo:mlr1132 two-component sensor; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase 3188518 9389037 Hden_3123 Hyphomicrobium denitrificans ATCC 51888 histidine kinase YP_003757239.1 3187154 D 582899 CDS YP_003757240.1 300024629 9389038 complement(3188522..3189199) 1 NC_014313.1 KEGG: mlo:mll1133 two-component response regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 3189199 9389038 Hden_3124 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003757240.1 3188522 R 582899 CDS YP_003757241.1 300024630 9389039 complement(3189203..3189436) 1 NC_014313.1 KEGG: rno:24826 thyroglobulin; thyroglobulin 3189436 9389039 Hden_3125 Hyphomicrobium denitrificans ATCC 51888 thyroglobulin YP_003757241.1 3189203 R 582899 CDS YP_003757242.1 300024631 9389040 complement(3189454..3190905) 1 NC_014313.1 KEGG: nha:Nham_1427 hypothetical protein; hypothetical protein 3190905 9389040 Hden_3126 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757242.1 3189454 R 582899 CDS YP_003757243.1 300024632 9389041 3191058..3192062 1 NC_014313.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: maq:Maqu_1687 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3192062 9389041 Hden_3127 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent epimerase/dehydratase YP_003757243.1 3191058 D 582899 CDS YP_003757244.1 300024633 9389042 complement(3192072..3194537) 1 NC_014313.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase; helicase-associated domain protein; KEGG: met:M446_6547 ATP-dependent helicase HrpB; SMART: helicase-associated domain protein; helicase; DEAD-like helicase; ATP-dependent helicase HrpB 3194537 9389042 Hden_3128 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent helicase HrpB YP_003757244.1 3192072 R 582899 CDS YP_003757245.1 300024634 9389043 complement(3194552..3195223) 1 NC_014313.1 TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: mes:Meso_0005 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 3195223 9389043 Hden_3129 Hyphomicrobium denitrificans ATCC 51888 ribulose-phosphate 3-epimerase YP_003757245.1 3194552 R 582899 CDS YP_003757246.1 300024635 9389044 complement(3195267..3196142) 1 NC_014313.1 KEGG: bra:BRADO1656 phosphoribulokinase (phosphopentokinase) (PRKase) (PRK); PFAM: phosphoribulokinase/uridine kinase; phosphoribulokinase 3196142 9389044 Hden_3130 Hyphomicrobium denitrificans ATCC 51888 phosphoribulokinase YP_003757246.1 3195267 R 582899 CDS YP_003757247.1 300024636 9389045 complement(3196187..3197230) 1 NC_014313.1 PFAM: inositol phosphatase/fructose-16-bisphosphatase; KEGG: nha:Nham_3754 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 3197230 9389045 Hden_3131 Hyphomicrobium denitrificans ATCC 51888 inositol phosphatase/fructose-16-bisphosphatase YP_003757247.1 3196187 R 582899 CDS YP_003757248.1 300024637 9389046 complement(3197481..3198212) 1 NC_014313.1 PFAM: 20S proteasome A and subunit betas; KEGG: mlo:mll0713 hypothetical protein; 20S proteasome subunits A and B 3198212 9389046 Hden_3132 Hyphomicrobium denitrificans ATCC 51888 20S proteasome subunits A and B YP_003757248.1 3197481 R 582899 CDS YP_003757249.1 300024638 9389047 complement(3198233..3199045) 1 NC_014313.1 KEGG: pde:Pden_0825 transglutaminase domain-containing protein; PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; transglutaminase 3199045 9389047 Hden_3133 Hyphomicrobium denitrificans ATCC 51888 transglutaminase YP_003757249.1 3198233 R 582899 CDS YP_003757250.1 300024639 9389048 complement(3199056..3200003) 1 NC_014313.1 PFAM: protein of unknown function DUF403; KEGG: mlo:mll0716 hypothetical protein; hypothetical protein 3200003 9389048 Hden_3134 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757250.1 3199056 R 582899 CDS YP_003757251.1 300024640 9389049 complement(3200011..3201426) 1 NC_014313.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: oan:Oant_3524 hypothetical protein; hypothetical protein 3201426 9389049 Hden_3135 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757251.1 3200011 R 582899 CDS YP_003757252.1 300024641 9389050 complement(3201592..3203268) 1 NC_014313.1 KEGG: rhi:NGR_c23560 formate-tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; formate--tetrahydrofolate ligase 3203268 9389050 Hden_3136 Hyphomicrobium denitrificans ATCC 51888 formate--tetrahydrofolate ligase YP_003757252.1 3201592 R 582899 CDS YP_003757253.1 300024642 9389051 complement(3203672..3204145) 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ote:Oter_3339 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3204145 9389051 Hden_3137 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003757253.1 3203672 R 582899 CDS YP_003757254.1 300024643 9389052 3204365..3205081 1 NC_014313.1 KEGG: hhe:HH1626 dihydrodipicolinate synthase; hypothetical protein 3205081 9389052 Hden_3138 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757254.1 3204365 D 582899 CDS YP_003757255.1 300024644 9389053 3205315..3205503 1 NC_014313.1 KEGG: bja:bll1285 hypothetical protein; hypothetical protein 3205503 9389053 Hden_3139 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757255.1 3205315 D 582899 CDS YP_003757256.1 300024645 9389054 complement(3205581..3206369) 1 NC_014313.1 SMART: protein phosphatase 2C domain protein; KEGG: jan:Jann_4143 protein serine/threonine phosphatases; protein serine/threonine phosphatase 3206369 9389054 Hden_3140 Hyphomicrobium denitrificans ATCC 51888 protein serine/threonine phosphatase YP_003757256.1 3205581 R 582899 CDS YP_003757257.1 300024646 9389055 complement(3206377..3207171) 1 NC_014313.1 PFAM: Forkhead-associated protein; KEGG: jan:Jann_1605 FHA domain-containing protein; FHA domain containing protein 3207171 9389055 Hden_3141 Hyphomicrobium denitrificans ATCC 51888 FHA domain containing protein YP_003757257.1 3206377 R 582899 CDS YP_003757258.1 300024647 9389056 complement(3207272..3207907) 1 NC_014313.1 KEGG: mxa:MXAN_5591 FHA domain-TPR-repeat-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; FHA domain containing protein 3207907 9389056 Hden_3142 Hyphomicrobium denitrificans ATCC 51888 FHA domain containing protein YP_003757258.1 3207272 R 582899 CDS YP_003757259.1 300024648 9389057 3208156..3210489 1 NC_014313.1 KEGG: app:CAP2UW1_3021 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; WD40 repeat, subgroup; SMART: hypothetical protein; serine/threonine-protein kinase-like domain-containing protein 3210489 9389057 Hden_3143 Hyphomicrobium denitrificans ATCC 51888 serine/threonine-protein kinase-like domain-containing protein YP_003757259.1 3208156 D 582899 CDS YP_003757260.1 300024649 9389058 3210584..3211987 1 NC_014313.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mes:Meso_4066 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 3211987 9389058 Hden_3144 Hyphomicrobium denitrificans ATCC 51888 cytochrome bd ubiquinol oxidase subunit I YP_003757260.1 3210584 D 582899 CDS YP_003757261.1 300024650 9389059 3211992..3213008 1 NC_014313.1 KEGG: mes:Meso_4065 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3213008 9389059 Hden_3145 Hyphomicrobium denitrificans ATCC 51888 cytochrome d ubiquinol oxidase subunit II YP_003757261.1 3211992 D 582899 CDS YP_003757262.1 300024651 9389060 3213137..3214297 1 NC_014313.1 SMART: nuclease (SNase domain protein); KEGG: rde:RD1_A0063 succinoglycan biosynthesis protein ExoI; nuclease 3214297 9389060 Hden_3146 Hyphomicrobium denitrificans ATCC 51888 nuclease YP_003757262.1 3213137 D 582899 CDS YP_003757263.1 300024652 9389061 3214802..3216097 1 NC_014313.1 KEGG: cyn:Cyan7425_0683 hypothetical protein; hypothetical protein 3216097 9389061 Hden_3147 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757263.1 3214802 D 582899 CDS YP_003757264.1 300024653 9389062 3216284..3217426 1 NC_014313.1 PFAM: fatty acid desaturase; KEGG: pla:Plav_3282 fatty acid desaturase; fatty acid desaturase 3217426 9389062 Hden_3148 Hyphomicrobium denitrificans ATCC 51888 fatty acid desaturase YP_003757264.1 3216284 D 582899 CDS YP_003757265.1 300024654 9389063 3217450..3218397 1 NC_014313.1 KEGG: tbd:Tbd_1270 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific 3218397 9389063 Hden_3149 Hyphomicrobium denitrificans ATCC 51888 protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific YP_003757265.1 3217450 D 582899 CDS YP_003757266.1 300024655 9389064 complement(3218417..3221272) 1 NC_014313.1 KEGG: eli:ELI_00525 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 3221272 9389064 Hden_3150 Hyphomicrobium denitrificans ATCC 51888 phosphoenolpyruvate carboxylase YP_003757266.1 3218417 R 582899 CDS YP_003757267.1 300024656 9389065 complement(3221379..3222278) 1 NC_014313.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rhi:NGR_c26250 succinyl-CoA synthetase subunit alpha; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha 3222278 9389065 Hden_3151 Hyphomicrobium denitrificans ATCC 51888 succinyl-CoA synthetase subunit alpha YP_003757267.1 3221379 R 582899 CDS YP_003757268.1 300024657 9389066 complement(3222297..3223460) 1 NC_014313.1 TIGRFAM: succinyl-CoA synthetase subunit beta; KEGG: rhi:NGR_c26240 malate-CoA ligase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 3223460 9389066 Hden_3152 Hyphomicrobium denitrificans ATCC 51888 succinyl-CoA synthetase subunit beta YP_003757268.1 3222297 R 582899 CDS YP_003757269.1 300024658 9389067 complement(3223506..3224468) 1 NC_014313.1 KEGG: mlo:mlr1323 subunit beta of citrate lyase; PFAM: HpcH/HpaI aldolase; Citryl-CoA lyase 3224468 9389067 Hden_3153 Hyphomicrobium denitrificans ATCC 51888 Citryl-CoA lyase YP_003757269.1 3223506 R 582899 CDS YP_003757270.1 300024659 9389068 complement(3224609..3225817) 1 NC_014313.1 PFAM: aminotransferase class V; KEGG: mlo:mlr1322 serine-glyoxylate aminotransferase; class V aminotransferase 3225817 9389068 Hden_3154 Hyphomicrobium denitrificans ATCC 51888 class V aminotransferase YP_003757270.1 3224609 R 582899 CDS YP_003757271.1 300024660 9389069 complement(3226069..3226692) 1 NC_014313.1 KEGG: mlo:mlr1320 nitrate/nitrite regulatory protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 3226692 9389069 Hden_3155 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003757271.1 3226069 R 582899 CDS YP_003757272.1 300024661 9389070 3227088..3227615 1 NC_014313.1 KEGG: bja:bll4177 hypothetical protein; hypothetical protein 3227615 9389070 Hden_3156 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757272.1 3227088 D 582899 CDS YP_003757273.1 300024662 9389072 3228075..3229058 1 NC_014313.1 PFAM: nuclease (SNase domain protein); KEGG: pla:Plav_1691 nuclease; nuclease 3229058 9389072 Hden_3157 Hyphomicrobium denitrificans ATCC 51888 nuclease YP_003757273.1 3228075 D 582899 CDS YP_003757274.1 300024663 9389073 complement(3229085..3230086) 1 NC_014313.1 PFAM: transcription factor CarD; KEGG: pla:Plav_1694 CarD family transcriptional regulator; CarD family transcriptional regulator 3230086 9389073 Hden_3158 Hyphomicrobium denitrificans ATCC 51888 CarD family transcriptional regulator YP_003757274.1 3229085 R 582899 CDS YP_003757275.1 300024664 9389074 complement(3230542..3230880) 1 NC_014313.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: nha:Nham_0506 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3230880 9389074 Hden_3159 Hyphomicrobium denitrificans ATCC 51888 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003757275.1 3230542 R 582899 CDS YP_003757276.1 300024665 9389075 complement(3231017..3231421) 1 NC_014313.1 KEGG: azl:AZL_026650 ribosome-associated heat shock protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3231421 9389075 Hden_3160 Hyphomicrobium denitrificans ATCC 51888 RNA-binding S4 domain-containing protein YP_003757276.1 3231017 R 582899 CDS YP_003757277.1 300024666 9389076 complement(3231421..3234600) 1 NC_014313.1 KEGG: xau:Xaut_2639 helicase domain-containing protein; PFAM: helicase; SMART: helicase; helicase 3234600 9389076 Hden_3161 Hyphomicrobium denitrificans ATCC 51888 helicase YP_003757277.1 3231421 R 582899 CDS YP_003757278.1 300024667 9389077 complement(3234728..3235597) 1 NC_014313.1 KEGG: bja:bll0161 hypothetical protein; hypothetical protein 3235597 9389077 Hden_3162 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757278.1 3234728 R 582899 CDS YP_003757279.1 300024668 9389078 3235891..3236184 1 NC_014313.1 KEGG: sit:TM1040_0671 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 3236184 9389078 Hden_3163 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L28 YP_003757279.1 3235891 D 582899 CDS YP_003757280.1 300024669 9389079 complement(3236226..3237320) 1 NC_014313.1 KEGG: rpd:RPD_0285 hypothetical protein; hypothetical protein 3237320 9389079 Hden_3164 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757280.1 3236226 R 582899 CDS YP_003757281.1 300024670 9389080 complement(3237324..3239219) 1 NC_014313.1 SMART: von Willebrand factor A; TIGRFAM: cobalt chelatase subunit CobT; KEGG: met:M446_6497 cobalt chelatase subunit CobT; PFAM: Cobalt chelatase CobT subunit; cobalt chelatase subunit CobT 3239219 9389080 Hden_3165 Hyphomicrobium denitrificans ATCC 51888 cobalt chelatase subunit CobT YP_003757281.1 3237324 R 582899 CDS YP_003757282.1 300024671 9389081 complement(3239322..3240323) 1 NC_014313.1 SMART: ATPase AAA; TIGRFAM: cobalt chelatase subunit CobS; KEGG: msl:Msil_0318 cobalt chelatase subunit CobS; PFAM: ATPase AAA; cobalt chelatase subunit CobS 3240323 9389081 Hden_3166 Hyphomicrobium denitrificans ATCC 51888 cobalt chelatase subunit CobS YP_003757282.1 3239322 R 582899 CDS YP_003757283.1 300024672 9389082 complement(3240422..3241045) 1 NC_014313.1 KEGG: bmr:BMI_I2045 DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3241045 9389082 Hden_3167 Hyphomicrobium denitrificans ATCC 51888 heat shock protein DnaJ domain-containing protein YP_003757283.1 3240422 R 582899 CDS YP_003757284.1 300024673 9389083 3241197..3241499 1 NC_014313.1 PFAM: BolA family protein; KEGG: rpb:RPB_0538 BolA-like protein; BolA family protein 3241499 9389083 Hden_3168 Hyphomicrobium denitrificans ATCC 51888 BolA family protein YP_003757284.1 3241197 D 582899 CDS YP_003757285.1 300024674 9389084 complement(3241514..3242839) 1 NC_014313.1 KEGG: pla:Plav_1716 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; hypothetical protein 3242839 9389084 Hden_3169 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757285.1 3241514 R 582899 CDS YP_003757286.1 300024675 9389085 complement(3242921..3244615) 1 NC_014313.1 KEGG: msl:Msil_2318 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; 3-dehydroquinate synthase 3244615 9389085 Hden_3170 Hyphomicrobium denitrificans ATCC 51888 3-dehydroquinate synthase YP_003757286.1 3242921 R 582899 CDS YP_003757287.1 300024676 9389086 3244855..3244998 1 NC_014313.1 KEGG: mdi:METDI3239 hypothetical protein; hypothetical protein 3244998 9389086 Hden_3171 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757287.1 3244855 D 582899 CDS YP_003757288.1 300024677 9389087 3245005..3246948 1 NC_014313.1 KEGG: pla:Plav_1719 hypothetical protein; hypothetical protein 3246948 9389087 Hden_3172 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757288.1 3245005 D 582899 CDS YP_003757289.1 300024678 9389088 3246957..3247886 1 NC_014313.1 KEGG: pla:Plav_1720 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerD 3247886 9389088 Hden_3173 Hyphomicrobium denitrificans ATCC 51888 tyrosine recombinase XerD YP_003757289.1 3246957 D 582899 CDS YP_003757290.1 300024679 9389089 3247952..3248611 1 NC_014313.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mmb:Mmol_0860 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3248611 9389089 Hden_3174 Hyphomicrobium denitrificans ATCC 51888 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_003757290.1 3247952 D 582899 CDS YP_003757291.1 300024680 9389090 3248635..3250143 1 NC_014313.1 KEGG: hoh:Hoch_6851 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 3250143 9389090 Hden_3175 Hyphomicrobium denitrificans ATCC 51888 amino acid/peptide transporter YP_003757291.1 3248635 D 582899 CDS YP_003757292.1 300024681 9389091 3250218..3251258 1 NC_014313.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; KEGG: xau:Xaut_0509 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: acetyl-CoA carboxylase, subunit alpha, conserved region; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3251258 9389091 Hden_3176 Hyphomicrobium denitrificans ATCC 51888 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_003757292.1 3250218 D 582899 CDS YP_003757293.1 300024682 9389092 3251433..3252398 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_3314 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3252398 9389092 Hden_3177 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757293.1 3251433 D 582899 CDS YP_003757294.1 300024683 9389093 3252416..3253303 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_5308 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3253303 9389093 Hden_3178 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757294.1 3252416 D 582899 CDS YP_003757295.1 300024684 9389094 3253473..3253811 1 NC_014313.1 KEGG: mno:Mnod_4372 hypothetical protein; hypothetical protein 3253811 9389094 Hden_3179 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757295.1 3253473 D 582899 CDS YP_003757296.1 300024685 9389095 3253994..3254950 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_0510 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3254950 9389095 Hden_3180 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757296.1 3253994 D 582899 CDS YP_003757297.1 300024686 9389096 3255058..3255651 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: mch:Mchl_3606 hypothetical protein; hypothetical protein 3255651 9389096 Hden_3181 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757297.1 3255058 D 582899 CDS YP_003757298.1 300024687 9389097 complement(3255711..3258662) 1 NC_014313.1 KEGG: mes:Meso_3014 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, Secsubunit alpha; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SEC-C motif domain protein; SecA preprotein cross-linking region; preprotein translocase subunit SecA 3258662 9389097 Hden_3182 Hyphomicrobium denitrificans ATCC 51888 preprotein translocase subunit SecA YP_003757298.1 3255711 R 582899 CDS YP_003757299.1 300024688 9389098 3259059..3259994 1 NC_014313.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azc:AZC_0311 PpiC-type peptidyl-prolyl cis-trans isomerase precursor; PpiC-type peptidyl-prolyl cis-trans isomerase 3259994 9389098 Hden_3183 Hyphomicrobium denitrificans ATCC 51888 PpiC-type peptidyl-prolyl cis-trans isomerase YP_003757299.1 3259059 D 582899 CDS YP_003757300.1 300024689 9389099 3260097..3261344 1 NC_014313.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: mlo:mll3461 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 3261344 9389099 Hden_3184 Hyphomicrobium denitrificans ATCC 51888 arginine biosynthesis bifunctional protein ArgJ YP_003757300.1 3260097 D 582899 CDS YP_003757301.1 300024690 9389100 3261357..3262013 1 NC_014313.1 KEGG: psa:PST_2541 thiopurine S-methyltransferase; PFAM: thiopurine S-methyltransferase; thiopurine S-methyltransferase 3262013 9389100 Hden_3185 Hyphomicrobium denitrificans ATCC 51888 thiopurine S-methyltransferase YP_003757301.1 3261357 D 582899 CDS YP_003757302.1 300024691 9389101 3262010..3262417 1 NC_014313.1 KEGG: pla:Plav_1733 mutator MutT protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; mutator MutT protein 3262417 9389101 Hden_3186 Hyphomicrobium denitrificans ATCC 51888 mutator MutT protein YP_003757302.1 3262010 D 582899 CDS YP_003757303.1 300024692 9389102 complement(3262386..3263297) 1 NC_014313.1 PFAM: methyltransferase type 11; KEGG: pla:Plav_1735 methyltransferase type 11; type 11 methyltransferase 3263297 9389102 Hden_3187 Hyphomicrobium denitrificans ATCC 51888 type 11 methyltransferase YP_003757303.1 3262386 R 582899 CDS YP_003757304.1 300024693 9389103 3263354..3264172 1 NC_014313.1 KEGG: rpc:RPC_0520 phosphoribosyltransferase; manually curated; PFAM: phosphoribosyltransferase; phosphoribosyltransferase 3264172 9389103 Hden_3188 Hyphomicrobium denitrificans ATCC 51888 phosphoribosyltransferase YP_003757304.1 3263354 D 582899 CDS YP_003757305.1 300024694 9389104 3264288..3264560 1 NC_014313.1 KEGG: pfl:PFL_0373 glutaredoxin; TIGRFAM: glutaredoxin; PFAM: glutaredoxin; glutaredoxin 3264560 9389104 Hden_3189 Hyphomicrobium denitrificans ATCC 51888 glutaredoxin YP_003757305.1 3264288 D 582899 CDS YP_003757306.1 300024695 9389105 3264563..3265447 1 NC_014313.1 PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pla:Plav_1738 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3265447 9389105 Hden_3190 Hyphomicrobium denitrificans ATCC 51888 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_003757306.1 3264563 D 582899 CDS YP_003757307.1 300024696 9389106 3265448..3265897 1 NC_014313.1 PFAM: protein of unknown function DUF1178; KEGG: mpo:Mpop_3477 protein of unknown function DUF1178; hypothetical protein 3265897 9389106 Hden_3191 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757307.1 3265448 D 582899 CDS YP_003757308.1 300024697 9389107 complement(3265933..3266187) 1 NC_014313.1 hypothetical protein 3266187 9389107 Hden_3192 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757308.1 3265933 R 582899 CDS YP_003757309.1 300024698 9389108 3266538..3267608 1 NC_014313.1 SMART: biotin and thiamin synthesis associated; Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: mlo:mll5831 biotin synthetase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; biotin synthase 3267608 9389108 Hden_3193 Hyphomicrobium denitrificans ATCC 51888 biotin synthase YP_003757309.1 3266538 D 582899 CDS YP_003757310.1 300024699 9389109 3267592..3268725 1 NC_014313.1 KEGG: rpb:RPB_4344 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 3268725 9389109 Hden_3194 Hyphomicrobium denitrificans ATCC 51888 8-amino-7-oxononanoate synthase YP_003757310.1 3267592 D 582899 CDS YP_003757311.1 300024700 9389110 3268722..3269369 1 NC_014313.1 KEGG: nha:Nham_2815 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 3269369 9389110 Hden_3195 Hyphomicrobium denitrificans ATCC 51888 dethiobiotin synthase YP_003757311.1 3268722 D 582899 CDS YP_003757312.1 300024701 9389111 3269366..3270625 1 NC_014313.1 KEGG: nha:Nham_2814 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3270625 9389111 Hden_3196 Hyphomicrobium denitrificans ATCC 51888 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003757312.1 3269366 D 582899 CDS YP_003757313.1 300024702 9389112 3270622..3271602 1 NC_014313.1 KEGG: rhi:NGR_c25100 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; beta-ketoacyl-acyl-carrier-protein synthase III 3271602 9389112 Hden_3197 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl-acyl-carrier-protein synthase III YP_003757313.1 3270622 D 582899 CDS YP_003757314.1 300024703 9389113 complement(3271603..3272178) 1 NC_014313.1 KEGG: pag:PLES_04211 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein; YceI family protein 3272178 9389113 Hden_3198 Hyphomicrobium denitrificans ATCC 51888 YceI family protein YP_003757314.1 3271603 R 582899 CDS YP_003757315.1 300024704 9389114 complement(3272178..3272756) 1 NC_014313.1 PFAM: cytochrome B561; KEGG: hch:HCH_01820 cytochrome b561; cytochrome B561 3272756 9389114 Hden_3199 Hyphomicrobium denitrificans ATCC 51888 cytochrome B561 YP_003757315.1 3272178 R 582899 CDS YP_003757316.1 300024705 9389115 3272970..3273221 1 NC_014313.1 KEGG: smt:Smal_1230 SMC domain protein; hypothetical protein 3273221 9389115 Hden_3200 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757316.1 3272970 D 582899 CDS YP_003757317.1 300024706 9389116 3273214..3273771 1 NC_014313.1 KEGG: bja:blr7297 hypothetical protein; hypothetical protein 3273771 9389116 Hden_3201 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757317.1 3273214 D 582899 CDS YP_003757318.1 300024707 9389117 3273838..3274011 1 NC_014313.1 PFAM: hemic uptake protein hemP; KEGG: hha:Hhal_0386 hypothetical protein; hemic uptake protein hemP 3274011 9389117 Hden_3202 Hyphomicrobium denitrificans ATCC 51888 hemic uptake protein hemP YP_003757318.1 3273838 D 582899 CDS YP_003757319.1 300024708 9389118 complement(3274186..3275556) 1 NC_014313.1 KEGG: rlt:Rleg2_0703 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3275556 9389118 Hden_3203 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003757319.1 3274186 R 582899 CDS YP_003757320.1 300024709 9389119 complement(3275559..3276236) 1 NC_014313.1 KEGG: mlo:mlr4457 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 3276236 9389119 Hden_3204 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003757320.1 3275559 R 582899 CDS YP_003757321.1 300024710 9389120 complement(3276367..3277629) 1 NC_014313.1 KEGG: rru:Rru_A2971 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 3277629 9389120 Hden_3205 Hyphomicrobium denitrificans ATCC 51888 Bcr/CflA subfamily drug resistance transporter YP_003757321.1 3276367 R 582899 CDS YP_003757322.1 300024711 9389121 3278000..3279964 1 NC_014313.1 KEGG: oca:OCAR_7084 hypothetical protein; hypothetical protein 3279964 9389121 Hden_3206 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757322.1 3278000 D 582899 CDS YP_003757323.1 300024712 9389122 3280013..3280837 1 NC_014313.1 KEGG: ade:Adeh_0278 ribonuclease HII; PFAM: ribonuclease HII/HIII; ribonuclease H 3280837 9389122 Hden_3207 Hyphomicrobium denitrificans ATCC 51888 ribonuclease H YP_003757323.1 3280013 D 582899 CDS YP_003757324.1 300024713 9389123 3281018..3281620 1 NC_014313.1 KEGG: rle:RL3895 transmembrane protein; transmembrane protein 3281620 9389123 Hden_3208 Hyphomicrobium denitrificans ATCC 51888 transmembrane protein YP_003757324.1 3281018 D 582899 CDS YP_003757325.1 300024714 9389125 3282059..3282349 1 NC_014313.1 PFAM: protein of unknown function YGGT; KEGG: bid:Bind_2879 protein of unknown function YGGT; hypothetical protein 3282349 9389125 Hden_3209 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757325.1 3282059 D 582899 CDS YP_003757326.1 300024715 9389126 3282346..3282696 1 NC_014313.1 PFAM: protein of unknown function DUF167; KEGG: mlo:msl4154 hypothetical protein; hypothetical protein 3282696 9389126 Hden_3210 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757326.1 3282346 D 582899 CDS YP_003757327.1 300024716 9389127 3282716..3283603 1 NC_014313.1 KEGG: bja:bll0549 bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase (NADP(+)) 3283603 9389127 Hden_3211 Hyphomicrobium denitrificans ATCC 51888 methylenetetrahydrofolate dehydrogenase (NADP(+)) YP_003757327.1 3282716 D 582899 CDS YP_003757328.1 300024717 9389128 complement(3283801..3285330) 1 NC_014313.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: rec:RHECIAT_CH0000361 probable Mg-chelatase protein; SMART: ATPase AAA; Mg chelatase subunit ChlI 3285330 9389128 Hden_3212 Hyphomicrobium denitrificans ATCC 51888 Mg chelatase subunit ChlI YP_003757328.1 3283801 R 582899 CDS YP_003757329.1 300024718 9389129 3285448..3286440 1 NC_014313.1 KEGG: mpo:Mpop_0131 ISSpo8, transposase; ISSpo8, transposase 3286440 9389129 Hden_3213 Hyphomicrobium denitrificans ATCC 51888 ISSpo8, transposase YP_003757329.1 3285448 D 582899 CDS YP_003757330.1 300024719 9389130 complement(3286483..3286983) 1 NC_014313.1 KEGG: mgr:MGG_09796 hypothetical protein; hypothetical protein 3286983 9389130 Hden_3214 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757330.1 3286483 R 582899 CDS YP_003757331.1 300024720 9389132 complement(3288131..3289174) 1 NC_014313.1 KEGG: acp:A2cp1_3760 hypothetical protein; hypothetical protein 3289174 9389132 Hden_3216 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757331.1 3288131 R 582899 CDS YP_003757332.1 300024721 9389133 complement(3289307..3289672) 1 NC_014313.1 KEGG: pth:PTH_0648 permease; permease 3289672 9389133 Hden_3217 Hyphomicrobium denitrificans ATCC 51888 permease YP_003757332.1 3289307 R 582899 CDS YP_003757333.1 300024722 9389134 complement(3289696..3290211) 1 NC_014313.1 KEGG: rpb:RPB_1018 hypothetical protein; hypothetical protein 3290211 9389134 Hden_3218 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757333.1 3289696 R 582899 CDS YP_003757334.1 300024723 9389135 complement(3290264..3291214) 1 NC_014313.1 TIGRFAM: glutathione synthetase; KEGG: rpc:RPC_0319 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; glutathione synthetase 3291214 9389135 Hden_3219 Hyphomicrobium denitrificans ATCC 51888 glutathione synthetase YP_003757334.1 3290264 R 582899 CDS YP_003757335.1 300024724 9389136 complement(3291389..3293623) 1 NC_014313.1 TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase; helicase; KEGG: pla:Plav_1460 primosome assembly protein PriA; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' 3293623 9389136 Hden_3220 Hyphomicrobium denitrificans ATCC 51888 primosomal protein N' YP_003757335.1 3291389 R 582899 CDS YP_003757336.1 300024725 9389137 3293727..3294383 1 NC_014313.1 KEGG: mes:Meso_3212 translaldolase; TIGRFAM: transaldolase; PFAM: transaldolase; transaldolase 3294383 9389137 Hden_3221 Hyphomicrobium denitrificans ATCC 51888 transaldolase YP_003757336.1 3293727 D 582899 CDS YP_003757337.1 300024726 9389138 3294418..3295833 1 NC_014313.1 PFAM: FAD linked oxidase; KEGG: bja:bll2569 FAD dependent oxidoreductase; FAD linked oxidase 3295833 9389138 Hden_3222 Hyphomicrobium denitrificans ATCC 51888 FAD linked oxidase YP_003757337.1 3294418 D 582899 CDS YP_003757338.1 300024727 9389139 3295887..3296870 1 NC_014313.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pla:Plav_1457 integrase family protein; integrase family protein 3296870 9389139 Hden_3223 Hyphomicrobium denitrificans ATCC 51888 integrase family protein YP_003757338.1 3295887 D 582899 CDS YP_003757339.1 300024728 9389140 3296898..3297914 1 NC_014313.1 PFAM: GumN family protein; KEGG: mes:Meso_3402 GumN; GumN family protein 3297914 9389140 Hden_3224 Hyphomicrobium denitrificans ATCC 51888 GumN family protein YP_003757339.1 3296898 D 582899 CDS YP_003757340.1 300024729 9389141 complement(3297954..3299366) 1 NC_014313.1 KEGG: nha:Nham_0537 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 3299366 9389141 Hden_3225 Hyphomicrobium denitrificans ATCC 51888 dihydrolipoamide dehydrogenase YP_003757340.1 3297954 R 582899 CDS YP_003757341.1 300024730 9389142 complement(3299370..3300704) 1 NC_014313.1 KEGG: azc:AZC_4011 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 3300704 9389142 Hden_3226 Hyphomicrobium denitrificans ATCC 51888 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_003757341.1 3299370 R 582899 CDS YP_003757342.1 300024731 9389143 complement(3300966..3303926) 1 NC_014313.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase; dehydrogenase E1 component; KEGG: met:M446_2164 2-oxoglutarate dehydrogenase E1 component; SMART: transketolase central region; 2-oxoglutarate dehydrogenase, E1 subunit 3303926 9389143 Hden_3227 Hyphomicrobium denitrificans ATCC 51888 2-oxoglutarate dehydrogenase, E1 subunit YP_003757342.1 3300966 R 582899 CDS YP_003757343.1 300024732 9389144 complement(3304034..3304933) 1 NC_014313.1 TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: pzu:PHZ_c0159 succinyl-CoA synthetase alpha-subunit; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha 3304933 9389144 Hden_3228 Hyphomicrobium denitrificans ATCC 51888 succinyl-CoA synthetase subunit alpha YP_003757343.1 3304034 R 582899 CDS YP_003757344.1 300024733 9389145 complement(3305045..3306244) 1 NC_014313.1 TIGRFAM: succinyl-CoA synthetase subunit beta; KEGG: oca:OCAR_6554 succinyl-CoA synthetase beta chain (SCS-alpha); PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 3306244 9389145 Hden_3229 Hyphomicrobium denitrificans ATCC 51888 succinyl-CoA synthetase subunit beta YP_003757344.1 3305045 R 582899 CDS YP_003757345.1 300024734 9389146 3306448..3307092 1 NC_014313.1 KEGG: mmr:Mmar10_1758 hypothetical protein; hypothetical protein 3307092 9389146 Hden_3230 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757345.1 3306448 D 582899 CDS YP_003757346.1 300024735 9389147 complement(3307158..3308129) 1 NC_014313.1 KEGG: mdi:METDI2311 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; malate dehydrogenase 3308129 9389147 Hden_3231 Hyphomicrobium denitrificans ATCC 51888 malate dehydrogenase YP_003757346.1 3307158 R 582899 CDS YP_003757347.1 300024736 9389148 complement(3308315..3309475) 1 NC_014313.1 PFAM: AFG1-family ATPase; KEGG: mpo:Mpop_0870 AFG1-family ATPase; AFG1-family ATPase 3309475 9389148 Hden_3232 Hyphomicrobium denitrificans ATCC 51888 AFG1-family ATPase YP_003757347.1 3308315 R 582899 CDS YP_003757348.1 300024737 9389149 3309714..3310310 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_0325 hypothetical protein; GCN5-like N-acetyltransferase 3310310 9389149 Hden_3233 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003757348.1 3309714 D 582899 CDS YP_003757349.1 300024738 9389150 3310575..3310691 1 NC_014313.1 KEGG: gau:GAU_0658 hypothetical protein; hypothetical protein 3310691 9389150 Hden_3234 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757349.1 3310575 D 582899 CDS YP_003757350.1 300024739 9389152 complement(3311306..3312085) 1 NC_014313.1 KEGG: atc:AGR_C_4790 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 3312085 9389152 Hden_3236 Hyphomicrobium denitrificans ATCC 51888 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003757350.1 3311306 R 582899 CDS YP_003757351.1 300024740 9389153 complement(3312224..3312823) 1 NC_014313.1 KEGG: ret:RHE_PE00350 L-asparaginase II protein; hypothetical protein 3312823 9389153 Hden_3237 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757351.1 3312224 R 582899 CDS YP_003757352.1 300024741 9389154 complement(3312909..3314756) 1 NC_014313.1 KEGG: msl:Msil_3563 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit 3314756 9389154 Hden_3238 Hyphomicrobium denitrificans ATCC 51888 succinate dehydrogenase, flavoprotein subunit YP_003757352.1 3312909 R 582899 CDS YP_003757353.1 300024742 9389155 complement(3314761..3315141) 1 NC_014313.1 KEGG: bmr:BMI_I1925 succinate dehydrogenase, hydrophobic membrane anchor protein, TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein 3315141 9389155 Hden_3239 Hyphomicrobium denitrificans ATCC 51888 succinate dehydrogenase, hydrophobic membrane anchor protein YP_003757353.1 3314761 R 582899 CDS YP_003757354.1 300024743 9389156 complement(3315144..3315557) 1 NC_014313.1 KEGG: mlo:mll4266 succinate dehydrogenase membrane anchor subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit 3315557 9389156 Hden_3240 Hyphomicrobium denitrificans ATCC 51888 succinate dehydrogenase, cytochrome b556 subunit YP_003757354.1 3315144 R 582899 CDS YP_003757355.1 300024744 9389157 complement(3315744..3316802) 1 NC_014313.1 PFAM: MaoC domain protein dehydratase; KEGG: azc:AZC_3739 MaoC family protein; MaoC domain-containing protein dehydratase 3316802 9389157 Hden_3241 Hyphomicrobium denitrificans ATCC 51888 MaoC domain-containing protein dehydratase YP_003757355.1 3315744 R 582899 CDS YP_003757356.1 300024745 9389158 complement(3316928..3317869) 1 NC_014313.1 KEGG: bid:Bind_1188 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; Citryl-CoA lyase 3317869 9389158 Hden_3242 Hyphomicrobium denitrificans ATCC 51888 Citryl-CoA lyase YP_003757356.1 3316928 R 582899 CDS YP_003757357.1 300024746 9389159 3318031..3318831 1 NC_014313.1 TIGRFAM: pyridoxal kinase; KEGG: mes:Meso_3224 pyridoxamine kinase; PFAM: phosphomethylpyrimidine kinase type-1; pyridoxal kinase 3318831 9389159 Hden_3243 Hyphomicrobium denitrificans ATCC 51888 pyridoxal kinase YP_003757357.1 3318031 D 582899 CDS YP_003757358.1 300024747 9389160 3318854..3319225 1 NC_014313.1 KEGG: vap:Vapar_1961 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase; arsenate reductase 3319225 9389160 Hden_3244 Hyphomicrobium denitrificans ATCC 51888 arsenate reductase YP_003757358.1 3318854 D 582899 CDS YP_003757359.1 300024748 9389161 3319349..3320542 1 NC_014313.1 KEGG: rru:Rru_A0128 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 3320542 9389161 Hden_3245 Hyphomicrobium denitrificans ATCC 51888 Na+/H+ antiporter NhaA YP_003757359.1 3319349 D 582899 CDS YP_003757360.1 300024749 9389162 3320562..3321200 1 NC_014313.1 KEGG: bmr:BMI_I1845 carbonic anhydrase, PFAM: carbonic anhydrase; carbonate dehydratase 3321200 9389162 Hden_3246 Hyphomicrobium denitrificans ATCC 51888 carbonate dehydratase YP_003757360.1 3320562 D 582899 CDS YP_003757361.1 300024750 9389163 complement(3321233..3321823) 1 NC_014313.1 KEGG: bmr:BMI_I101 thiol:disulfide interchange protein, thioredoxin family; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin; periplasmic protein thiol/disulfide oxidoreductase DsbE 3321823 9389163 Hden_3247 Hyphomicrobium denitrificans ATCC 51888 periplasmic protein thiol/disulfide oxidoreductase DsbE YP_003757361.1 3321233 R 582899 CDS YP_003757362.1 300024751 9389164 complement(3321828..3321998) 1 NC_014313.1 KEGG: rpe:RPE_0314 heme exporter protein D (CcmD); TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); heme exporter protein CcmD 3321998 9389164 Hden_3248 Hyphomicrobium denitrificans ATCC 51888 heme exporter protein CcmD YP_003757362.1 3321828 R 582899 CDS YP_003757363.1 300024752 9389165 complement(3322000..3322755) 1 NC_014313.1 KEGG: rhi:NGR_c32350 heme exporter protein CcmC; TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; heme exporter protein CcmC 3322755 9389165 Hden_3249 Hyphomicrobium denitrificans ATCC 51888 heme exporter protein CcmC YP_003757363.1 3322000 R 582899 CDS YP_003757364.1 300024753 9389166 complement(3322804..3322941) 1 NC_014313.1 hypothetical protein 3322941 9389166 Hden_3250 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757364.1 3322804 R 582899 CDS YP_003757365.1 300024754 9389167 complement(3323052..3323717) 1 NC_014313.1 KEGG: pla:Plav_1405 heme exporter protein CcmB; TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C biogenesis protein CcmB; heme exporter protein CcmB 3323717 9389167 Hden_3251 Hyphomicrobium denitrificans ATCC 51888 heme exporter protein CcmB YP_003757365.1 3323052 R 582899 CDS YP_003757366.1 300024755 9389168 complement(3323714..3324337) 1 NC_014313.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: pla:Plav_1404 heme exporter protein CcmA; SMART: ATPase AAA; heme exporter protein CcmA 3324337 9389168 Hden_3252 Hyphomicrobium denitrificans ATCC 51888 heme exporter protein CcmA YP_003757366.1 3323714 R 582899 CDS YP_003757367.1 300024756 9389169 3324572..3327286 1 NC_014313.1 KEGG: sme:SMc03846 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; aconitate hydratase 1 3327286 9389169 Hden_3253 Hyphomicrobium denitrificans ATCC 51888 aconitate hydratase 1 YP_003757367.1 3324572 D 582899 CDS YP_003757368.1 300024757 9389170 3327550..3328323 1 NC_014313.1 PFAM: protein of unknown function DUF1223; KEGG: bbt:BBta_0383 hypothetical protein; hypothetical protein 3328323 9389170 Hden_3254 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757368.1 3327550 D 582899 CDS YP_003757369.1 300024758 9389171 complement(3328466..3330547) 1 NC_014313.1 KEGG: rce:RC1_2186 peptidyl-dipeptidase dcp; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; peptidyl-dipeptidase Dcp 3330547 9389171 Hden_3255 Hyphomicrobium denitrificans ATCC 51888 peptidyl-dipeptidase Dcp YP_003757369.1 3328466 R 582899 CDS YP_003757370.1 300024759 9389172 3330998..3331384 1 NC_014313.1 KEGG: oan:Oant_0102 hypothetical protein; hypothetical protein 3331384 9389172 Hden_3256 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757370.1 3330998 D 582899 CDS YP_003757371.1 300024760 9389173 complement(3331459..3332226) 1 NC_014313.1 PFAM: protein of unknown function UPF0005; KEGG: bmr:BMI_I91 hypothetical protein; hypothetical protein 3332226 9389173 Hden_3257 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757371.1 3331459 R 582899 CDS YP_003757372.1 300024761 9389174 complement(3332333..3334915) 1 NC_014313.1 PFAM: protein of unknown function DUF214; KEGG: mno:Mnod_1778 protein of unknown function DUF214; hypothetical protein 3334915 9389174 Hden_3258 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757372.1 3332333 R 582899 CDS YP_003757373.1 300024762 9389175 complement(3334912..3335667) 1 NC_014313.1 KEGG: azl:AZL_000320 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 3335667 9389175 Hden_3259 Hyphomicrobium denitrificans ATCC 51888 ABC transporter YP_003757373.1 3334912 R 582899 CDS YP_003757374.1 300024763 9389176 3335742..3336443 1 NC_014313.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rpa:RPA0195 acyl-CoA thioesterase precursor; G-D-S-L family lipolytic protein 3336443 9389176 Hden_3260 Hyphomicrobium denitrificans ATCC 51888 G-D-S-L family lipolytic protein YP_003757374.1 3335742 D 582899 CDS YP_003757375.1 300024764 9389177 3336487..3337059 1 NC_014313.1 KEGG: atc:AGR_C_4856 hypothetical 35.7 KDA protein in MalA 3'region (ORF3); TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; 2'-5' RNA ligase 3337059 9389177 Hden_3261 Hyphomicrobium denitrificans ATCC 51888 2'-5' RNA ligase YP_003757375.1 3336487 D 582899 CDS YP_003757376.1 300024765 9389178 complement(3337085..3338062) 1 NC_014313.1 PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mdi:METDI1108 Zn-binding quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein 3338062 9389178 Hden_3262 Hyphomicrobium denitrificans ATCC 51888 alcohol dehydrogenase zinc-binding domain-containing protein YP_003757376.1 3337085 R 582899 CDS YP_003757377.1 300024766 9389179 3338215..3338721 1 NC_014313.1 KEGG: hne:HNE_3326 RNA methyltransferase; manually curated; PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 3338721 9389179 Hden_3263 Hyphomicrobium denitrificans ATCC 51888 tRNA/rRNA methyltransferase SpoU YP_003757377.1 3338215 D 582899 CDS YP_003757378.1 300024767 9389180 3338721..3339230 1 NC_014313.1 KEGG: xau:Xaut_0405 hypothetical protein; hypothetical protein 3339230 9389180 Hden_3264 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757378.1 3338721 D 582899 CDS YP_003757379.1 300024768 9389181 complement(3339274..3339912) 1 NC_014313.1 KEGG: bra:BRADO0206 Smr protein/MutS2 C-terminal; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 3339912 9389181 Hden_3265 Hyphomicrobium denitrificans ATCC 51888 Smr protein/MutS2 YP_003757379.1 3339274 R 582899 CDS YP_003757380.1 300024769 9389182 complement(3339909..3341069) 1 NC_014313.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rpc:RPC_0300 MltA; MltA domain-containing protein 3341069 9389182 Hden_3266 Hyphomicrobium denitrificans ATCC 51888 MltA domain-containing protein YP_003757380.1 3339909 R 582899 CDS YP_003757381.1 300024770 9389183 complement(3341262..3342017) 1 NC_014313.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: avi:Avi_0009 membrane associated transporter protein; import inner membrane translocase subunit Tim44 3342017 9389183 Hden_3267 Hyphomicrobium denitrificans ATCC 51888 import inner membrane translocase subunit Tim44 YP_003757381.1 3341262 R 582899 CDS YP_003757382.1 300024771 9389184 3342289..3342837 1 NC_014313.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: pla:Plav_1249 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 3342837 9389184 Hden_3268 Hyphomicrobium denitrificans ATCC 51888 FxsA cytoplasmic membrane protein YP_003757382.1 3342289 D 582899 CDS YP_003757383.1 300024772 9389185 3342946..3343452 1 NC_014313.1 KEGG: sjp:SJA_C1-08290 preprotein translocase SecB subunit; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; protein-export protein SecB 3343452 9389185 Hden_3269 Hyphomicrobium denitrificans ATCC 51888 protein-export protein SecB YP_003757383.1 3342946 D 582899 CDS YP_003757384.1 300024773 9389186 complement(3343474..3344187) 1 NC_014313.1 SMART: exonuclease; TIGRFAM: DNA polymerase III epsilon subunit; KEGG: rpt:Rpal_0303 DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; DNA polymerase III subunit epsilon 3344187 9389186 Hden_3270 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunit epsilon YP_003757384.1 3343474 R 582899 CDS YP_003757385.1 300024774 9389187 complement(3344229..3344846) 1 NC_014313.1 KEGG: mlo:mlr4493 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; dephospho-CoA kinase 3344846 9389187 Hden_3271 Hyphomicrobium denitrificans ATCC 51888 dephospho-CoA kinase YP_003757385.1 3344229 R 582899 CDS YP_003757386.1 300024775 9389188 complement(3344840..3345676) 1 NC_014313.1 KEGG: bcs:BCAN_A2115 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase 3345676 9389188 Hden_3272 Hyphomicrobium denitrificans ATCC 51888 shikimate 5-dehydrogenase YP_003757386.1 3344840 R 582899 CDS YP_003757387.1 300024776 9389189 complement(3345673..3346284) 1 NC_014313.1 KEGG: pla:Plav_1255 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 3346284 9389189 Hden_3273 Hyphomicrobium denitrificans ATCC 51888 maf protein YP_003757387.1 3345673 R 582899 CDS YP_003757388.1 300024777 9389190 complement(3346277..3347128) 1 NC_014313.1 PFAM: protein of unknown function DUF299; KEGG: mes:Meso_3478 hypothetical protein; hypothetical protein 3347128 9389190 Hden_3274 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757388.1 3346277 R 582899 CDS YP_003757389.1 300024778 9389191 3347561..3348631 1 NC_014313.1 TIGRFAM: uroporphyrinogen decarboxylase; KEGG: bra:BRADO1875 uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 3348631 9389191 Hden_3275 Hyphomicrobium denitrificans ATCC 51888 uroporphyrinogen decarboxylase YP_003757389.1 3347561 D 582899 CDS YP_003757390.1 300024779 9389192 3348648..3349157 1 NC_014313.1 PFAM: conserved hypothetical protein; KEGG: mes:Meso_3475 hypothetical protein; hypothetical protein 3349157 9389192 Hden_3276 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757390.1 3348648 D 582899 CDS YP_003757391.1 300024780 9389193 3349368..3350633 1 NC_014313.1 TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor domain protein; Rho termination factor RNA-binding; KEGG: bbt:BBta_0163 transcription termination factor Rho; SMART: Cold shock protein; ATPase AAA; transcription termination factor Rho 3350633 9389193 Hden_3277 Hyphomicrobium denitrificans ATCC 51888 transcription termination factor Rho YP_003757391.1 3349368 D 582899 CDS YP_003757392.1 300024781 9389194 complement(3350735..3351727) 1 NC_014313.1 PFAM: fatty acid hydroxylase; KEGG: nfa:nfa53570 hypothetical protein; fatty acid hydroxylase 3351727 9389194 Hden_3278 Hyphomicrobium denitrificans ATCC 51888 fatty acid hydroxylase YP_003757392.1 3350735 R 582899 CDS YP_003757393.1 300024782 9389195 complement(3351771..3353807) 1 NC_014313.1 PFAM: protein of unknown function DUF255; KEGG: azl:AZL_000080 hypothetical protein; hypothetical protein 3353807 9389195 Hden_3279 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757393.1 3351771 R 582899 CDS YP_003757394.1 300024783 9389196 3353861..3355195 1 NC_014313.1 KEGG: pla:Plav_1272 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification GTPase TrmE 3355195 9389196 Hden_3280 Hyphomicrobium denitrificans ATCC 51888 tRNA modification GTPase TrmE YP_003757394.1 3353861 D 582899 CDS YP_003757395.1 300024784 9389197 3355386..3357257 1 NC_014313.1 KEGG: pla:Plav_1274 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; glucose inhibited division protein A 3357257 9389197 Hden_3281 Hyphomicrobium denitrificans ATCC 51888 glucose inhibited division protein A YP_003757395.1 3355386 D 582899 CDS YP_003757396.1 300024785 9389198 3357257..3357916 1 NC_014313.1 KEGG: xau:Xaut_1835 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 3357916 9389198 Hden_3282 Hyphomicrobium denitrificans ATCC 51888 methyltransferase GidB YP_003757396.1 3357257 D 582899 CDS YP_003757397.1 300024786 9389199 3357921..3358769 1 NC_014313.1 PFAM: cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_1836 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 3358769 9389199 Hden_3283 Hyphomicrobium denitrificans ATCC 51888 cobyrinic acid ac-diamide synthase YP_003757397.1 3357921 D 582899 CDS YP_003757398.1 300024787 9389200 3358830..3359708 1 NC_014313.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pla:Plav_1277 ParB-like partition protein; SMART: ParB domain protein nuclease; parB-like partition protein 3359708 9389200 Hden_3284 Hyphomicrobium denitrificans ATCC 51888 parB-like partition protein YP_003757398.1 3358830 D 582899 CDS YP_003757399.1 300024788 9389201 3359819..3360151 1 NC_014313.1 manually curated; TIGRFAM: phosphoribosyl-ATP diphosphatase; KEGG: bbt:BBta_0141 phosphoribosyl-ATP pyrophosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase 3360151 9389201 Hden_3285 Hyphomicrobium denitrificans ATCC 51888 phosphoribosyl-ATP diphosphatase YP_003757399.1 3359819 D 582899 CDS YP_003757400.1 300024789 9389202 3360148..3361155 1 NC_014313.1 TIGRFAM: pantothenate kinase; KEGG: pla:Plav_1229 pantothenate kinase; pantothenate kinase 3361155 9389202 Hden_3286 Hyphomicrobium denitrificans ATCC 51888 pantothenate kinase YP_003757400.1 3360148 D 582899 CDS YP_003757401.1 300024790 9389203 complement(3361325..3361600) 1 NC_014313.1 KEGG: dmo:Dmoj_GI20404 GI20404 gene product from transcript GI20404-RA; hypothetical protein 3361600 9389203 Hden_3287 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757401.1 3361325 R 582899 CDS YP_003757402.1 300024791 9389204 complement(3361795..3362790) 1 NC_014313.1 PFAM: PfkB domain protein; KEGG: azl:AZL_028340 adenosine kinase; PfkB domain-containing protein 3362790 9389204 Hden_3288 Hyphomicrobium denitrificans ATCC 51888 PfkB domain-containing protein YP_003757402.1 3361795 R 582899 CDS YP_003757403.1 300024792 9389205 complement(3362855..3363898) 1 NC_014313.1 KEGG: rpd:RPD_0434 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3363898 9389205 Hden_3289 Hyphomicrobium denitrificans ATCC 51888 DNA polymerase III subunit delta YP_003757403.1 3362855 R 582899 CDS YP_003757404.1 300024793 9389206 complement(3363942..3364514) 1 NC_014313.1 PFAM: protein of unknown function DUF2159, secreted; KEGG: xau:Xaut_1447 hypothetical protein; hypothetical protein 3364514 9389206 Hden_3290 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757404.1 3363942 R 582899 CDS YP_003757405.1 300024794 9389207 complement(3364501..3367125) 1 NC_014313.1 manually curated; TIGRFAM: leucyl-tRNA synthetase; KEGG: mes:Meso_3209 leucyl-tRNA synthetase; leucyl-tRNA synthetase 3367125 9389207 Hden_3291 Hyphomicrobium denitrificans ATCC 51888 leucyl-tRNA synthetase YP_003757405.1 3364501 R 582899 CDS YP_003757406.1 300024795 9389208 3367387..3368535 1 NC_014313.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:ebA669 hypothetical protein; filamentation induced by cAMP protein Fic 3368535 9389208 Hden_3292 Hyphomicrobium denitrificans ATCC 51888 filamentation induced by cAMP protein Fic YP_003757406.1 3367387 D 582899 CDS YP_003757407.1 300024796 9389209 complement(3368594..3368998) 1 NC_014313.1 PFAM: protein of unknown function DUF336; KEGG: sus:acid_6903 hypothetical protein; hypothetical protein 3368998 9389209 Hden_3293 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757407.1 3368594 R 582899 CDS YP_003757408.1 300024797 9389210 3369128..3369808 1 NC_014313.1 PFAM: alanine racemase domain protein; KEGG: avi:Avi_4380 hypothetical protein; alanine racemase domain-containing protein 3369808 9389210 Hden_3294 Hyphomicrobium denitrificans ATCC 51888 alanine racemase domain-containing protein YP_003757408.1 3369128 D 582899 CDS YP_003757409.1 300024798 9389211 3369942..3370874 1 NC_014313.1 KEGG: isc:IscW_ISCW003608 discs large protein; hypothetical protein 3370874 9389211 Hden_3295 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757409.1 3369942 D 582899 CDS YP_003757410.1 300024799 9389212 complement(3370977..3371900) 1 NC_014313.1 PFAM: protein of unknown function DUF344; KEGG: pmy:Pmen_4078 hypothetical protein; hypothetical protein 3371900 9389212 Hden_3296 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757410.1 3370977 R 582899 CDS YP_003757411.1 300024800 9389213 complement(3372010..3373035) 1 NC_014313.1 PFAM: aldo/keto reductase; KEGG: bgl:bglu_2g10820 oxidoreductase, MocA; aldo/keto reductase 3373035 9389213 Hden_3297 Hyphomicrobium denitrificans ATCC 51888 aldo/keto reductase YP_003757411.1 3372010 R 582899 CDS YP_003757412.1 300024801 9389214 3373380..3373955 1 NC_014313.1 KEGG: bbt:BBta_6578 hypothetical protein; hypothetical protein 3373955 9389214 Hden_3298 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757412.1 3373380 D 582899 CDS YP_003757413.1 300024802 9389215 complement(3374013..3375029) 1 NC_014313.1 SMART: beta-lactamase; KEGG: smd:Smed_5230 beta-lactamase domain-containing protein; beta-lactamase 3375029 9389215 Hden_3299 Hyphomicrobium denitrificans ATCC 51888 beta-lactamase YP_003757413.1 3374013 R 582899 CDS YP_003757414.1 300024803 9389216 3375108..3375902 1 NC_014313.1 SMART: Helix-turn-helix, AraC domain; KEGG: smd:Smed_5231 helix-turn-helix domain-containing protein; AraC family transcriptional regulator 3375902 9389216 Hden_3300 Hyphomicrobium denitrificans ATCC 51888 AraC family transcriptional regulator YP_003757414.1 3375108 D 582899 CDS YP_003757415.1 300024804 9389217 3376153..3378891 1 NC_014313.1 KEGG: mdi:METDI2870 DNA-binding membrane protein required for chromosome resolution and partitioning; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; cell division protein FtsK/SpoIIIE 3378891 9389217 Hden_3301 Hyphomicrobium denitrificans ATCC 51888 cell division protein FtsK/SpoIIIE YP_003757415.1 3376153 D 582899 CDS YP_003757416.1 300024805 9389218 3379058..3379813 1 NC_014313.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pla:Plav_1299 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3379813 9389218 Hden_3302 Hyphomicrobium denitrificans ATCC 51888 outer membrane lipoprotein carrier protein LolA YP_003757416.1 3379058 D 582899 CDS YP_003757417.1 300024806 9389219 complement(3380138..3380662) 1 NC_014313.1 KEGG: mrd:Mrad2831_5013 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 3380662 9389219 Hden_3303 Hyphomicrobium denitrificans ATCC 51888 Crp/Fnr family transcriptional regulator YP_003757417.1 3380138 R 582899 CDS YP_003757418.1 300024807 9389220 complement(3380846..3381532) 1 NC_014313.1 KEGG: mlo:mlr4237 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 3381532 9389220 Hden_3304 Hyphomicrobium denitrificans ATCC 51888 winged helix family two component transcriptional regulator YP_003757418.1 3380846 R 582899 CDS YP_003757419.1 300024808 9389221 3381646..3382200 1 NC_014313.1 KEGG: azc:AZC_0089 hypothetical protein; manually curated; PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3382200 9389221 Hden_3305 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757419.1 3381646 D 582899 CDS YP_003757420.1 300024809 9389222 complement(3382332..3383813) 1 NC_014313.1 KEGG: mpo:Mpop_2051 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter 3383813 9389222 Hden_3306 Hyphomicrobium denitrificans ATCC 51888 ammonium transporter YP_003757420.1 3382332 R 582899 CDS YP_003757421.1 300024810 9389223 complement(3383865..3384203) 1 NC_014313.1 PFAM: nitrogen regulatory protein P-II; KEGG: xau:Xaut_2209 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3384203 9389223 Hden_3307 Hyphomicrobium denitrificans ATCC 51888 nitrogen regulatory protein P-II YP_003757421.1 3383865 R 582899 CDS YP_003757422.1 300024811 9389224 complement(3384420..3385316) 1 NC_014313.1 KEGG: smd:Smed_3049 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3385316 9389224 Hden_3308 Hyphomicrobium denitrificans ATCC 51888 acyl-CoA thioesterase II YP_003757422.1 3384420 R 582899 CDS YP_003757423.1 300024812 9389225 3385431..3386675 1 NC_014313.1 KEGG: rpe:RPE_0407 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3386675 9389225 Hden_3309 Hyphomicrobium denitrificans ATCC 51888 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_003757423.1 3385431 D 582899 CDS YP_003757424.1 300024813 9389226 complement(3386677..3387234) 1 NC_014313.1 KEGG: bbt:BBta_0366 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA processing protein RimM 3387234 9389226 Hden_3310 Hyphomicrobium denitrificans ATCC 51888 16S rRNA processing protein RimM YP_003757424.1 3386677 R 582899 CDS YP_003757425.1 300024814 9389227 complement(3387261..3387620) 1 NC_014313.1 KEGG: ath:AT3G46760 protein kinase family protein; hypothetical protein 3387620 9389227 Hden_3311 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757425.1 3387261 R 582899 CDS YP_003757426.1 300024815 9389228 complement(3387754..3388122) 1 NC_014313.1 KEGG: sme:SMc03859 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 3388122 9389228 Hden_3312 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S16 YP_003757426.1 3387754 R 582899 CDS YP_003757427.1 300024816 9389229 complement(3388164..3389744) 1 NC_014313.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: xau:Xaut_1464 signal recognition particle protein; SMART: ATPase AAA; signal recognition particle protein 3389744 9389229 Hden_3313 Hyphomicrobium denitrificans ATCC 51888 signal recognition particle protein YP_003757427.1 3388164 R 582899 CDS YP_003757428.1 300024817 9389230 complement(3390103..3390663) 1 NC_014313.1 PFAM: lipid A 3-O-deacylase-related; KEGG: plt:Plut_0491 hypothetical protein; lipid A 3-O-deacylase-like protein 3390663 9389230 Hden_3314 Hyphomicrobium denitrificans ATCC 51888 lipid A 3-O-deacylase-like protein YP_003757428.1 3390103 R 582899 CDS YP_003757429.1 300024818 9389231 3391174..3392043 1 NC_014313.1 KEGG: rpt:Rpal_0251 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 3392043 9389231 Hden_3315 Hyphomicrobium denitrificans ATCC 51888 diaminopimelate epimerase YP_003757429.1 3391174 D 582899 CDS YP_003757430.1 300024819 9389232 3392100..3393359 1 NC_014313.1 TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; KEGG: rce:RC1_2196 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 3393359 9389232 Hden_3316 Hyphomicrobium denitrificans ATCC 51888 MiaB-like tRNA modifying protein YP_003757430.1 3392100 D 582899 CDS YP_003757431.1 300024820 9389233 3393356..3394528 1 NC_014313.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: mno:Mnod_4411 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3394528 9389233 Hden_3317 Hyphomicrobium denitrificans ATCC 51888 signal recognition particle-docking protein FtsY YP_003757431.1 3393356 D 582899 CDS YP_003757432.1 300024821 9389234 3394550..3395212 1 NC_014313.1 PFAM: Intracellular septation protein A; KEGG: xau:Xaut_0207 intracellular septation protein A; Intracellular septation protein A 3395212 9389234 Hden_3318 Hyphomicrobium denitrificans ATCC 51888 Intracellular septation protein A YP_003757432.1 3394550 D 582899 CDS YP_003757433.1 300024822 9389235 3395222..3395824 1 NC_014313.1 KEGG: rce:RC1_3945 intracellular septation protein A, TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A 3395824 9389235 Hden_3319 Hyphomicrobium denitrificans ATCC 51888 intracellular septation protein A YP_003757433.1 3395222 D 582899 CDS YP_003757434.1 300024823 9389236 3396068..3396541 1 NC_014313.1 manually curated; PFAM: regulatory protein MarR; KEGG: MarR family transcriptional regulator; SMART: regulatory protein MarR; MarR family transcriptional regulator 3396541 9389236 Hden_3320 Hyphomicrobium denitrificans ATCC 51888 MarR family transcriptional regulator YP_003757434.1 3396068 D 582899 CDS YP_003757435.1 300024824 9389237 complement(3396599..3397627) 1 NC_014313.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: nwi:Nwi_2793 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 3397627 9389237 Hden_3321 Hyphomicrobium denitrificans ATCC 51888 aspartate-semialdehyde dehydrogenase YP_003757435.1 3396599 R 582899 CDS YP_003757436.1 300024825 9389238 3397814..3398272 1 NC_014313.1 KEGG: pla:Plav_0413 hypothetical protein; hypothetical protein 3398272 9389238 Hden_3322 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757436.1 3397814 D 582899 CDS YP_003757437.1 300024826 9389239 complement(3398427..3399542) 1 NC_014313.1 TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mno:Mnod_7390 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3399542 9389239 Hden_3323 Hyphomicrobium denitrificans ATCC 51888 3-isopropylmalate dehydrogenase YP_003757437.1 3398427 R 582899 CDS YP_003757438.1 300024827 9389240 complement(3399701..3400297) 1 NC_014313.1 KEGG: rpe:RPE_2619 hypothetical protein; hypothetical protein 3400297 9389240 Hden_3324 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757438.1 3399701 R 582899 CDS YP_003757439.1 300024828 9389241 complement(3400328..3401002) 1 NC_014313.1 TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; KEGG: bja:blr0686 phosphoglyceromutase; SMART: phosphoglycerate mutase; phosphoglycerate mutase 1 family 3401002 9389241 Hden_3325 Hyphomicrobium denitrificans ATCC 51888 phosphoglycerate mutase 1 family YP_003757439.1 3400328 R 582899 CDS YP_003757440.1 300024829 9389242 complement(3401044..3401844) 1 NC_014313.1 TIGRFAM: dihydrodipicolinate reductase; KEGG: rce:RC1_3162 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 3401844 9389242 Hden_3326 Hyphomicrobium denitrificans ATCC 51888 dihydrodipicolinate reductase YP_003757440.1 3401044 R 582899 CDS YP_003757441.1 300024830 9389243 complement(3401988..3402515) 1 NC_014313.1 KEGG: rpc:RPC_0040 inorganic pyrophosphatase; PFAM: inorganic pyrophosphatase; inorganic diphosphatase 3402515 9389243 Hden_3327 Hyphomicrobium denitrificans ATCC 51888 inorganic diphosphatase YP_003757441.1 3401988 R 582899 CDS YP_003757442.1 300024831 9389244 complement(3402635..3403141) 1 NC_014313.1 PFAM: GCN5-related N-acetyltransferase; KEGG: msl:Msil_1026 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3403141 9389244 Hden_3328 Hyphomicrobium denitrificans ATCC 51888 GCN5-like N-acetyltransferase YP_003757442.1 3402635 R 582899 CDS YP_003757443.1 300024832 9389245 complement(3403281..3403757) 1 NC_014313.1 PFAM: Phasin; KEGG: oca:OCAR_5122 phasin; Phasin 3403757 9389245 Hden_3329 Hyphomicrobium denitrificans ATCC 51888 Phasin YP_003757443.1 3403281 R 582899 CDS YP_003757444.1 300024833 9389246 complement(3404006..3405310) 1 NC_014313.1 SMART: ATPase AAA; KEGG: mmr:Mmar10_3066 ATPase AAA; ATPase AAA 3405310 9389246 Hden_3330 Hyphomicrobium denitrificans ATCC 51888 ATPase AAA YP_003757444.1 3404006 R 582899 CDS YP_003757445.1 300024834 9389247 complement(3405444..3405701) 1 NC_014313.1 KEGG: nwi:Nwi_3095 hypothetical protein; hypothetical protein 3405701 9389247 Hden_3331 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757445.1 3405444 R 582899 CDS YP_003757446.1 300024835 9389248 complement(3405795..3407633) 1 NC_014313.1 TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: oan:Oant_3304 GTP-binding protein TypA; SMART: elongation factor G domain protein; GTP-binding protein TypA 3407633 9389248 Hden_3332 Hyphomicrobium denitrificans ATCC 51888 GTP-binding protein TypA YP_003757446.1 3405795 R 582899 CDS YP_003757447.1 300024836 9389249 complement(3407775..3408554) 1 NC_014313.1 KEGG: kva:Kvar_4695 MscS mechanosensitive ion channel; hypothetical protein 3408554 9389249 Hden_3333 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757447.1 3407775 R 582899 CDS YP_003757448.1 300024837 9389250 complement(3408721..3409455) 1 NC_014313.1 PFAM: peptidase M50; KEGG: mth:MTH816 sporulation protein IVFB related protein; peptidase M50 3409455 9389250 Hden_3334 Hyphomicrobium denitrificans ATCC 51888 peptidase M50 YP_003757448.1 3408721 R 582899 CDS YP_003757449.1 300024838 9389251 complement(3409512..3410039) 1 NC_014313.1 KEGG: bra:BRADO0724 hypothetical protein; hypothetical protein 3410039 9389251 Hden_3335 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757449.1 3409512 R 582899 CDS YP_003757450.1 300024839 9389252 complement(3410042..3410248) 1 NC_014313.1 PFAM: TOBE domain protein; KEGG: ara:Arad_0570 molybdo-pterin binding protein; TOBE domain-containing protein 3410248 9389252 Hden_3336 Hyphomicrobium denitrificans ATCC 51888 TOBE domain-containing protein YP_003757450.1 3410042 R 582899 CDS YP_003757451.1 300024840 9389253 complement(3410281..3411141) 1 NC_014313.1 KEGG: pzu:PHZ_c0325 hydrolase, carbon-nitrogen family; TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-carbamoylputrescine amidase 3411141 9389253 Hden_3337 Hyphomicrobium denitrificans ATCC 51888 N-carbamoylputrescine amidase YP_003757451.1 3410281 R 582899 CDS YP_003757452.1 300024841 9389254 complement(3411141..3412169) 1 NC_014313.1 KEGG: cak:Caul_4697 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Agmatine deiminase 3412169 9389254 Hden_3338 Hyphomicrobium denitrificans ATCC 51888 Agmatine deiminase YP_003757452.1 3411141 R 582899 CDS YP_003757453.1 300024842 9389255 complement(3412318..3412533) 1 NC_014313.1 KEGG: nph:NP4976A hypothetical protein; hypothetical protein 3412533 9389255 Hden_3339 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757453.1 3412318 R 582899 CDS YP_003757454.1 300024843 9389256 complement(3412576..3413805) 1 NC_014313.1 TIGRFAM: argininosuccinate synthase; KEGG: ara:Arad_4374 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase 3413805 9389256 Hden_3340 Hyphomicrobium denitrificans ATCC 51888 argininosuccinate synthase YP_003757454.1 3412576 R 582899 CDS YP_003757455.1 300024844 9389257 3414248..3415030 1 NC_014313.1 KEGG: dac:Daci_1499 hypothetical protein; hypothetical protein 3415030 9389257 Hden_3341 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757455.1 3414248 D 582899 CDS YP_003757456.1 300024845 9389258 complement(3415070..3415633) 1 NC_014313.1 KEGG: mmi:MMAR_2683 PPE family protein, PPE31; hypothetical protein 3415633 9389258 Hden_3342 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757456.1 3415070 R 582899 CDS YP_003757457.1 300024846 9389259 complement(3415793..3416452) 1 NC_014313.1 KEGG: rpd:RPD_0711 hypothetical protein; hypothetical protein 3416452 9389259 Hden_3343 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757457.1 3415793 R 582899 CDS YP_003757458.1 300024847 9389260 complement(3416553..3417758) 1 NC_014313.1 TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: mes:Meso_2859 radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; Cfr family radical SAM protein 3417758 9389260 Hden_3344 Hyphomicrobium denitrificans ATCC 51888 Cfr family radical SAM protein YP_003757458.1 3416553 R 582899 CDS YP_003757459.1 300024848 9389261 complement(3417998..3419305) 1 NC_014313.1 TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA; Clp ATPase-like; KEGG: bbt:BBta_0152 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase AAA; heat shock protein HslVU, ATPase HslU 3419305 9389261 Hden_3345 Hyphomicrobium denitrificans ATCC 51888 heat shock protein HslVU, ATPase HslU YP_003757459.1 3417998 R 582899 CDS YP_003757460.1 300024849 9389262 complement(3419302..3420390) 1 NC_014313.1 KEGG: hba:Hbal_3130 hypothetical protein; hypothetical protein 3420390 9389262 Hden_3346 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757460.1 3419302 R 582899 CDS YP_003757461.1 300024850 9389263 complement(3420410..3420982) 1 NC_014313.1 PFAM: 20S proteasome A and subunit betas; KEGG: oca:OCAR_4394 ATP-dependent protease peptidase subunit; 20S proteasome subunits A and B 3420982 9389263 Hden_3347 Hyphomicrobium denitrificans ATCC 51888 20S proteasome subunits A and B YP_003757461.1 3420410 R 582899 CDS YP_003757462.1 300024851 9389264 3421256..3421855 1 NC_014313.1 KEGG: oca:OCAR_4395 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 3421855 9389264 Hden_3348 Hyphomicrobium denitrificans ATCC 51888 imidazoleglycerol-phosphate dehydratase YP_003757462.1 3421256 D 582899 CDS YP_003757463.1 300024852 9389265 3421910..3422398 1 NC_014313.1 PFAM: protein of unknown function DUF2506; KEGG: rpb:RPB_0406 hypothetical protein; hypothetical protein 3422398 9389265 Hden_3349 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757463.1 3421910 D 582899 CDS YP_003757464.1 300024853 9389266 3422411..3423064 1 NC_014313.1 KEGG: mno:Mnod_7531 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3423064 9389266 Hden_3350 Hyphomicrobium denitrificans ATCC 51888 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003757464.1 3422411 D 582899 CDS YP_003757465.1 300024854 9389267 complement(3423232..3423588) 1 NC_014313.1 KEGG: msm:MSMEG_0311 glycosyltransferase; hypothetical protein 3423588 9389267 Hden_3351 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757465.1 3423232 R 582899 CDS YP_003757466.1 300024855 9389268 complement(3423806..3424174) 1 NC_014313.1 KEGG: ypb:YPTS_4102 SinR-like protein; hypothetical protein 3424174 9389268 Hden_3352 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757466.1 3423806 R 582899 CDS YP_003757467.1 300024856 9389269 complement(3424363..3424677) 1 NC_014313.1 KEGG: tcr:508387.40 hypothetical protein; hypothetical protein 3424677 9389269 Hden_3353 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757467.1 3424363 R 582899 CDS YP_003757468.1 300024857 9389270 3424969..3425697 1 NC_014313.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: rpe:RPE_0367 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 3425697 9389270 Hden_3354 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_003757468.1 3424969 D 582899 CDS YP_003757469.1 300024858 9389271 3425694..3425918 1 NC_014313.1 KEGG: hch:HCH_03334 thiol-disulfide isomerase and thioredoxins; hypothetical protein 3425918 9389271 Hden_3355 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757469.1 3425694 D 582899 CDS YP_003757470.1 300024859 9389272 3425970..3427553 1 NC_014313.1 KEGG: azc:AZC_0213 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 3427553 9389272 Hden_3356 Hyphomicrobium denitrificans ATCC 51888 peptide chain release factor 3 YP_003757470.1 3425970 D 582899 CDS YP_003757471.1 300024860 9389273 complement(3427576..3427887) 1 NC_014313.1 KEGG: fps:FP1220 hypothetical protein; hypothetical protein 3427887 9389273 Hden_3357 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757471.1 3427576 R 582899 CDS YP_003757472.1 300024861 9389274 3428061..3428837 1 NC_014313.1 KEGG: rhi:NGR_c34000 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; imidazoleglycerol phosphate synthase, cyclase subunit 3428837 9389274 Hden_3358 Hyphomicrobium denitrificans ATCC 51888 imidazoleglycerol phosphate synthase, cyclase subunit YP_003757472.1 3428061 D 582899 CDS YP_003757473.1 300024862 9389275 complement(3429009..3429770) 1 NC_014313.1 SMART: HhH-GPD family protein; iron-sulfur cluster loop; DNA-binding protein; TIGRFAM: endonuclease III; KEGG: rpa:RPA0343 endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; endonuclease III 3429770 9389275 Hden_3359 Hyphomicrobium denitrificans ATCC 51888 endonuclease III YP_003757473.1 3429009 R 582899 CDS YP_003757474.1 300024863 9389276 3429831..3430328 1 NC_014313.1 PFAM: protein of unknown function DUF2244, transmembrane; KEGG: rce:RC1_3158 hypothetical protein; hypothetical protein 3430328 9389276 Hden_3360 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757474.1 3429831 D 582899 CDS YP_003757475.1 300024864 9389277 complement(3430330..3430542) 1 NC_014313.1 KEGG: vei:Veis_0812 FAD dependent oxidoreductase; hypothetical protein 3430542 9389277 Hden_3361 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757475.1 3430330 R 582899 CDS YP_003757476.1 300024865 9389278 complement(3430547..3430942) 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: acr:Acry_1387 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3430942 9389278 Hden_3362 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003757476.1 3430547 R 582899 CDS YP_003757477.1 300024866 9389279 complement(3431032..3431640) 1 NC_014313.1 KEGG: pla:Plav_1424 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, small subunit 3431640 9389279 Hden_3363 Hyphomicrobium denitrificans ATCC 51888 3-isopropylmalate dehydratase, small subunit YP_003757477.1 3431032 R 582899 CDS YP_003757478.1 300024867 9389280 complement(3431671..3432102) 1 NC_014313.1 KEGG: ccs:CCNA_00377 chromosome partition protein smc; hypothetical protein 3432102 9389280 Hden_3364 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757478.1 3431671 R 582899 CDS YP_003757479.1 300024868 9389281 complement(3432179..3432724) 1 NC_014313.1 KEGG: nvi:100117425 similar to kuzbanian; hypothetical protein 3432724 9389281 Hden_3365 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757479.1 3432179 R 582899 CDS YP_003757480.1 300024869 9389282 complement(3432857..3433267) 1 NC_014313.1 PFAM: protein of unknown function DUF1025; KEGG: hypothetical protein; hypothetical protein 3433267 9389282 Hden_3366 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757480.1 3432857 R 582899 CDS YP_003757481.1 300024870 9389283 complement(3433350..3434162) 1 NC_014313.1 PFAM: methyltransferase type 11; KEGG: methyltransferase domain-containing protein; type 11 methyltransferase 3434162 9389283 Hden_3367 Hyphomicrobium denitrificans ATCC 51888 type 11 methyltransferase YP_003757481.1 3433350 R 582899 CDS YP_003757482.1 300024871 9389284 3434339..3435088 1 NC_014313.1 PFAM: autoinducer synthesis protein; KEGG: nwi:Nwi_2715 hypothetical protein; autoinducer synthesis protein 3435088 9389284 Hden_3368 Hyphomicrobium denitrificans ATCC 51888 autoinducer synthesis protein YP_003757482.1 3434339 D 582899 CDS YP_003757483.1 300024872 9389285 complement(3435149..3436555) 1 NC_014313.1 KEGG: nha:Nham_3584 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, large subunit 3436555 9389285 Hden_3369 Hyphomicrobium denitrificans ATCC 51888 3-isopropylmalate dehydratase, large subunit YP_003757483.1 3435149 R 582899 CDS YP_003757484.1 300024873 9389286 complement(3436667..3437554) 1 NC_014313.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_1149 transcriptional regulator; LysR family transcriptional regulator 3437554 9389286 Hden_3370 Hyphomicrobium denitrificans ATCC 51888 LysR family transcriptional regulator YP_003757484.1 3436667 R 582899 CDS YP_003757485.1 300024874 9389287 complement(3437670..3438638) 1 NC_014313.1 KEGG: pla:Plav_2305 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 3438638 9389287 Hden_3371 Hyphomicrobium denitrificans ATCC 51888 thioredoxin reductase YP_003757485.1 3437670 R 582899 CDS YP_003757486.1 300024875 9389288 3438788..3440092 1 NC_014313.1 PFAM: general substrate transporter; KEGG: avi:Avi_2266 MFS permease; general substrate transporter 3440092 9389288 Hden_3372 Hyphomicrobium denitrificans ATCC 51888 general substrate transporter YP_003757486.1 3438788 D 582899 CDS YP_003757487.1 300024876 9389289 complement(3440089..3440853) 1 NC_014313.1 KEGG: rpc:RPC_0575 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC 3440853 9389289 Hden_3373 Hyphomicrobium denitrificans ATCC 51888 DNA repair protein RadC YP_003757487.1 3440089 R 582899 CDS YP_003757488.1 300024877 9389290 complement(3440866..3441699) 1 NC_014313.1 KEGG: rpe:RPE_0094 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase, type I 3441699 9389290 Hden_3374 Hyphomicrobium denitrificans ATCC 51888 methionine aminopeptidase, type I YP_003757488.1 3440866 R 582899 CDS YP_003757489.1 300024878 9389291 3441809..3442972 1 NC_014313.1 PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_3590 OmpA/MotB; OmpA/MotB domain-containing protein 3442972 9389291 Hden_3375 Hyphomicrobium denitrificans ATCC 51888 OmpA/MotB domain-containing protein YP_003757489.1 3441809 D 582899 CDS YP_003757490.1 300024879 9389292 complement(3443127..3443822) 1 NC_014313.1 KEGG: smd:Smed_3101 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 3443822 9389292 Hden_3376 Hyphomicrobium denitrificans ATCC 51888 50S ribosomal protein L19 YP_003757490.1 3443127 R 582899 CDS YP_003757491.1 300024880 9389293 complement(3444034..3445707) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3445707 9389293 Hden_3377 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757491.1 3444034 R 582899 CDS YP_003757492.1 300024881 9389294 complement(3445915..3446646) 1 NC_014313.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: trmD; tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 3446646 9389294 Hden_3378 Hyphomicrobium denitrificans ATCC 51888 tRNA (guanine-N1)-methyltransferase YP_003757492.1 3445915 R 582899 CDS YP_003757493.1 300024882 9389295 complement(3446707..3446994) 1 NC_014313.1 PFAM: protein of unknown function DUF1330; KEGG: mrd:Mrad2831_3703 hypothetical protein; hypothetical protein 3446994 9389295 Hden_3379 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757493.1 3446707 R 582899 CDS YP_003757494.1 300024883 9389296 complement(3447091..3448071) 1 NC_014313.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: msl:Msil_0166 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3448071 9389296 Hden_3380 Hyphomicrobium denitrificans ATCC 51888 ErfK/YbiS/YcfS/YnhG family protein YP_003757494.1 3447091 R 582899 CDS YP_003757495.1 300024884 9389297 complement(3448232..3448927) 1 NC_014313.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: rpc:RPC_0333 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 3448927 9389297 Hden_3381 Hyphomicrobium denitrificans ATCC 51888 orotidine 5'-phosphate decarboxylase YP_003757495.1 3448232 R 582899 CDS YP_003757496.1 300024885 9389298 complement(3448933..3449532) 1 NC_014313.1 PFAM: NADPH-dependent FMN reductase; KEGG: pat:Patl_2576 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3449532 9389298 Hden_3382 Hyphomicrobium denitrificans ATCC 51888 NADPH-dependent FMN reductase YP_003757496.1 3448933 R 582899 CDS YP_003757497.1 300024886 9389299 complement(3449644..3450804) 1 NC_014313.1 TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: pla:Plav_3573 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 3450804 9389299 Hden_3383 Hyphomicrobium denitrificans ATCC 51888 chaperone protein DnaJ YP_003757497.1 3449644 R 582899 CDS YP_003757498.1 300024887 9389300 complement(3450957..3452882) 1 NC_014313.1 KEGG: azc:AZC_0690 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; chaperone protein DnaK 3452882 9389300 Hden_3384 Hyphomicrobium denitrificans ATCC 51888 chaperone protein DnaK YP_003757498.1 3450957 R 582899 CDS YP_003757499.1 300024888 9389301 complement(3453226..3453843) 1 NC_014313.1 PFAM: GrpE protein; KEGG: smd:Smed_0012 ribulose-phosphate 3-epimerase; GrpE protein 3453843 9389301 Hden_3385 Hyphomicrobium denitrificans ATCC 51888 GrpE protein YP_003757499.1 3453226 R 582899 CDS YP_003757500.1 300024889 9389302 complement(3453970..3455085) 1 NC_014313.1 KEGG: nwi:Nwi_0194 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 3455085 9389302 Hden_3386 Hyphomicrobium denitrificans ATCC 51888 heat-inducible transcription repressor HrcA YP_003757500.1 3453970 R 582899 CDS YP_003757501.1 300024890 9389303 3455188..3455901 1 NC_014313.1 TIGRFAM: ribonuclease PH; KEGG: xau:Xaut_2535 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 3455901 9389303 Hden_3387 Hyphomicrobium denitrificans ATCC 51888 ribonuclease PH YP_003757501.1 3455188 D 582899 CDS YP_003757502.1 300024891 9389304 3455926..3456351 1 NC_014313.1 PFAM: protein of unknown function DUF1772; KEGG: xau:Xaut_3066 hypothetical protein; hypothetical protein 3456351 9389304 Hden_3388 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757502.1 3455926 D 582899 CDS YP_003757503.1 300024892 9389305 3456336..3456770 1 NC_014313.1 PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01145 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3456770 9389305 Hden_3389 Hyphomicrobium denitrificans ATCC 51888 glyoxalase/bleomycin resistance protein/dioxygenase YP_003757503.1 3456336 D 582899 CDS YP_003757504.1 300024893 9389306 3456770..3457660 1 NC_014313.1 PFAM: Ham1 family protein; KEGG: azc:AZC_4290 deoxyribonucleotide triphosphate pyrophosphatase; Ham1 family protein 3457660 9389306 Hden_3390 Hyphomicrobium denitrificans ATCC 51888 Ham1 family protein YP_003757504.1 3456770 D 582899 CDS YP_003757505.1 300024894 9389307 3457657..3459081 1 NC_014313.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; KEGG: mrd:Mrad2831_2941 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 3459081 9389307 Hden_3391 Hyphomicrobium denitrificans ATCC 51888 oxygen-independent coproporphyrinogen III oxidase YP_003757505.1 3457657 D 582899 CDS YP_003757506.1 300024895 9389308 3459114..3459695 1 NC_014313.1 PFAM: SNARE associated Golgi protein; KEGG: azl:AZL_002820 hypothetical protein; hypothetical protein 3459695 9389308 Hden_3392 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757506.1 3459114 D 582899 CDS YP_003757507.1 300024896 9389309 3459799..3460320 1 NC_014313.1 KEGG: atc:AGR_L_2587 hypothetical protein; hypothetical protein 3460320 9389309 Hden_3393 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757507.1 3459799 D 582899 CDS YP_003757508.1 300024897 9389310 3461176..3461394 1 NC_014313.1 KEGG: gga:769807 similar to RanBP2 (Ran-binding protein 2); hypothetical protein 3461394 9389310 Hden_3394 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757508.1 3461176 D 582899 CDS YP_003757509.1 300024898 9389311 complement(3461405..3461974) 1 NC_014313.1 KEGG: pla:Plav_1633 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 3461974 9389311 Hden_3395 Hyphomicrobium denitrificans ATCC 51888 HNH endonuclease YP_003757509.1 3461405 R 582899 CDS YP_003757510.1 300024899 9389312 3462459..3463322 1 NC_014313.1 PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: rhi:NGR_c26840 glutamyl-tRNA synthetase, class Ic; glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein 3463322 9389312 Hden_3396 Hyphomicrobium denitrificans ATCC 51888 glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein YP_003757510.1 3462459 D 582899 CDS YP_003757511.1 300024900 9389313 3463615..3464016 1 NC_014313.1 KEGG: ade:Adeh_0506 PAS/PAC sensor signal transduction histidine kinase; hypothetical protein 3464016 9389313 Hden_3397 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757511.1 3463615 D 582899 CDS YP_003757512.1 300024901 9389314 3464119..3465060 1 NC_014313.1 PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mpo:Mpop_0473 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 3465060 9389314 Hden_3398 Hyphomicrobium denitrificans ATCC 51888 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_003757512.1 3464119 D 582899 CDS YP_003757513.1 300024902 9389315 3465057..3465446 1 NC_014313.1 PFAM: protein of unknown function UPF0102; KEGG: mes:Meso_4010 hypothetical protein; hypothetical protein 3465446 9389315 Hden_3399 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757513.1 3465057 D 582899 CDS YP_003757514.1 300024903 9389316 3465891..3466463 1 NC_014313.1 KEGG: bja:bll0443 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 3466463 9389316 Hden_3400 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F1 subunit delta YP_003757514.1 3465891 D 582899 CDS YP_003757515.1 300024904 9389317 3466591..3468120 1 NC_014313.1 KEGG: rlt:Rleg2_3654 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha 3468120 9389317 Hden_3401 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F1 subunit alpha YP_003757515.1 3466591 D 582899 CDS YP_003757516.1 300024905 9389318 3468147..3469037 1 NC_014313.1 KEGG: rec:RHECIAT_CH0004152 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; ATP synthase F1 subunit gamma 3469037 9389318 Hden_3402 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F1 subunit gamma YP_003757516.1 3468147 D 582899 CDS YP_003757517.1 300024906 9389319 3469054..3469458 1 NC_014313.1 KEGG: nwi:Nwi_0432 OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein; peroxiredoxin, Ohr subfamily 3469458 9389319 Hden_3403 Hyphomicrobium denitrificans ATCC 51888 peroxiredoxin, Ohr subfamily YP_003757517.1 3469054 D 582899 CDS YP_003757518.1 300024907 9389320 3469481..3470914 1 NC_014313.1 TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: avi:Avi_4106 ATP synthase F1 subunit beta; SMART: ATPase AAA; ATP synthase F1 subunit beta 3470914 9389320 Hden_3404 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F1 subunit beta YP_003757518.1 3469481 D 582899 CDS YP_003757519.1 300024908 9389321 3470974..3471246 1 NC_014313.1 KEGG: cak:Caul_4736 hypothetical protein; hypothetical protein 3471246 9389321 Hden_3405 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757519.1 3470974 D 582899 CDS YP_003757520.1 300024909 9389322 3471300..3471698 1 NC_014313.1 KEGG: pla:Plav_1466 ATP synthase F1 epsilon subunit; TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon-like; ATP synthase F1 subunit epsilon 3471698 9389322 Hden_3406 Hyphomicrobium denitrificans ATCC 51888 ATP synthase F1 subunit epsilon YP_003757520.1 3471300 D 582899 CDS YP_003757521.1 300024910 9389323 complement(3471781..3472302) 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: mes:Meso_3449 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 3472302 9389323 Hden_3407 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003757521.1 3471781 R 582899 CDS YP_003757522.1 300024911 9389324 complement(3472486..3473019) 1 NC_014313.1 PFAM: NUDIX hydrolase; KEGG: mlo:mll3998 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 3473019 9389324 Hden_3408 Hyphomicrobium denitrificans ATCC 51888 NUDIX hydrolase YP_003757522.1 3472486 R 582899 CDS YP_003757523.1 300024912 9389325 complement(3473106..3474536) 1 NC_014313.1 TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: bja:blr0434 carboxy-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease 3474536 9389325 Hden_3409 Hyphomicrobium denitrificans ATCC 51888 carboxyl-terminal protease YP_003757523.1 3473106 R 582899 CDS YP_003757524.1 300024913 9389326 complement(3474536..3476110) 1 NC_014313.1 PFAM: peptidase M23; KEGG: bja:blr0433 hypothetical protein; peptidase M23 3476110 9389326 Hden_3410 Hyphomicrobium denitrificans ATCC 51888 peptidase M23 YP_003757524.1 3474536 R 582899 CDS YP_003757525.1 300024914 9389327 3476368..3476556 1 NC_014313.1 PFAM: Hypoxia induced protein conserved region; KEGG: pla:Plav_1612 hypoxia induced protein region; hypoxia induced protein 3476556 9389327 Hden_3411 Hyphomicrobium denitrificans ATCC 51888 hypoxia induced protein YP_003757525.1 3476368 D 582899 CDS YP_003757526.1 300024915 9389328 3476630..3477211 1 NC_014313.1 TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: pla:Plav_1609 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase 3477211 9389328 Hden_3412 Hyphomicrobium denitrificans ATCC 51888 ATP/cobalamin adenosyltransferase YP_003757526.1 3476630 D 582899 CDS YP_003757527.1 300024916 9389329 3477480..3478235 1 NC_014313.1 KEGG: atc:AGR_L_2463 electron transfer flavoprotein beta-subunit (beta-ETF) (electron transfer flavoprotein small subunit) (ETFSS); PFAM: electron transfer flavoprotein alpha/beta-subunit; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 3478235 9389329 Hden_3413 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein alpha/beta-subunit YP_003757527.1 3477480 D 582899 CDS YP_003757528.1 300024917 9389330 3478235..3479179 1 NC_014313.1 KEGG: rpa:RPA4749 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha 3479179 9389330 Hden_3414 Hyphomicrobium denitrificans ATCC 51888 electron transfer flavoprotein subunit alpha YP_003757528.1 3478235 D 582899 CDS YP_003757529.1 300024918 9389331 3479216..3480145 1 NC_014313.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: met:M446_2005 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 3480145 9389331 Hden_3415 Hyphomicrobium denitrificans ATCC 51888 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein YP_003757529.1 3479216 D 582899 CDS YP_003757530.1 300024919 9389332 complement(3480152..3480955) 1 NC_014313.1 KEGG: sde:Sde_1317 RND efflux transporter; hypothetical protein 3480955 9389332 Hden_3416 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757530.1 3480152 R 582899 CDS YP_003757531.1 300024920 9389333 3481077..3481835 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:acid_5492 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3481835 9389333 Hden_3417 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003757531.1 3481077 D 582899 CDS YP_003757532.1 300024921 9389334 complement(3481819..3482577) 1 NC_014313.1 KEGG: hne:HNE_0420 pyrimidine 5'-nucleotidase; TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; pyrimidine 5'-nucleotidase 3482577 9389334 Hden_3418 Hyphomicrobium denitrificans ATCC 51888 pyrimidine 5'-nucleotidase YP_003757532.1 3481819 R 582899 CDS YP_003757533.1 300024922 9389335 complement(3482577..3483530) 1 NC_014313.1 KEGG: pla:Plav_0297 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase 3483530 9389335 Hden_3419 Hyphomicrobium denitrificans ATCC 51888 acetylglutamate kinase YP_003757533.1 3482577 R 582899 CDS YP_003757534.1 300024923 9389336 3483791..3485644 1 NC_014313.1 PFAM: Clp domain protein; KEGG: ssc:100113399 basic proline-rich protein; Clp domain-containing protein 3485644 9389336 Hden_3420 Hyphomicrobium denitrificans ATCC 51888 Clp domain-containing protein YP_003757534.1 3483791 D 582899 CDS YP_003757535.1 300024924 9389337 complement(3485674..3486339) 1 NC_014313.1 KEGG: bja:blr8099 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis GTP-binding protein YsxC 3486339 9389337 Hden_3421 Hyphomicrobium denitrificans ATCC 51888 ribosome biogenesis GTP-binding protein YsxC YP_003757535.1 3485674 R 582899 CDS YP_003757536.1 300024925 9389338 complement(3486374..3488248) 1 NC_014313.1 KEGG: azc:AZC_4053 inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: hypothetical protein; YidC/Oxa1 family membrane protein insertase 3488248 9389338 Hden_3422 Hyphomicrobium denitrificans ATCC 51888 YidC/Oxa1 family membrane protein insertase YP_003757536.1 3486374 R 582899 CDS YP_003757537.1 300024926 9389339 complement(3488341..3488805) 1 NC_014313.1 manually curated; TIGRFAM: ribonuclease P protein component; KEGG: bmr:BMI_II1016 ribonuclease P; PFAM: ribonuclease P protein; ribonuclease P protein component 3488805 9389339 Hden_3423 Hyphomicrobium denitrificans ATCC 51888 ribonuclease P protein component YP_003757537.1 3488341 R 582899 CDS YP_003757538.1 300024927 9389340 3489444..3490898 1 NC_014313.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mes:Meso_0352 pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3490898 9389340 Hden_3424 Hyphomicrobium denitrificans ATCC 51888 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_003757538.1 3489444 D 582899 CDS YP_003757539.1 300024928 9389341 3490911..3492446 1 NC_014313.1 KEGG: rpc:RPC_0820 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3492446 9389341 Hden_3425 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor signal transduction histidine kinase YP_003757539.1 3490911 D 582899 CDS YP_003757540.1 300024929 9389344 3494365..3494802 1 NC_014313.1 PFAM: protein of unknown function DUF411; KEGG: mes:Meso_4389 hypothetical protein; hypothetical protein 3494802 9389344 Hden_3427 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757540.1 3494365 D 582899 CDS YP_003757541.1 300024930 9389345 3495137..3496003 1 NC_014313.1 KEGG: oca:OCAR_4549 hypothetical protein; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese 3496003 9389345 Hden_3428 Hyphomicrobium denitrificans ATCC 51888 rhodanese YP_003757541.1 3495137 D 582899 CDS YP_003757542.1 300024931 9389346 3496108..3497145 1 NC_014313.1 PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mlo:mlr0353 cysteine synthase A; pyridoxal-5'-phosphate-dependent protein subunit beta 3497145 9389346 Hden_3429 Hyphomicrobium denitrificans ATCC 51888 pyridoxal-5'-phosphate-dependent protein subunit beta YP_003757542.1 3496108 D 582899 CDS YP_003757543.1 300024932 9389347 3497331..3497612 1 NC_014313.1 KEGG: osa:4334020 hypothetical protein; hypothetical protein 3497612 9389347 Hden_3430 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757543.1 3497331 D 582899 CDS YP_003757544.1 300024933 9389348 complement(3497705..3498148) 1 NC_014313.1 KEGG: cbe:Cbei_3763 periplasmic binding protein; hypothetical protein 3498148 9389348 Hden_3431 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757544.1 3497705 R 582899 CDS YP_003757545.1 300024934 9389349 3498528..3498746 1 NC_014313.1 KEGG: ang:An02g08610 hypothetical protein; hypothetical protein 3498746 9389349 Hden_3432 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757545.1 3498528 D 582899 CDS YP_003757546.1 300024935 9389351 3499453..3501873 1 NC_014313.1 KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; integral membrane sensor hybrid histidine kinase 3501873 9389351 Hden_3434 Hyphomicrobium denitrificans ATCC 51888 integral membrane sensor hybrid histidine kinase YP_003757546.1 3499453 D 582899 CDS YP_003757547.1 300024936 9389352 3501891..3502550 1 NC_014313.1 KEGG: smd:Smed_5114 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 3502550 9389352 Hden_3435 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003757547.1 3501891 D 582899 CDS YP_003757548.1 300024937 9389353 complement(3502590..3503003) 1 NC_014313.1 KEGG: azl:AZL_006960 two-component hybrid sensor and regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 3503003 9389353 Hden_3436 Hyphomicrobium denitrificans ATCC 51888 response regulator receiver protein YP_003757548.1 3502590 R 582899 CDS YP_003757549.1 300024938 9389354 3503249..3503956 1 NC_014313.1 PFAM: protein of unknown function DUF1345; KEGG: dar:Daro_0590 hypothetical protein; hypothetical protein 3503956 9389354 Hden_3437 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757549.1 3503249 D 582899 CDS YP_003757550.1 300024939 9389355 3504063..3505931 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold domain protein; hypothetical protein; response regulator receiver; KEGG: pla:Plav_0358 signal transduction histidine kinase; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase 3505931 9389355 Hden_3438 Hyphomicrobium denitrificans ATCC 51888 signal transduction histidine kinase YP_003757550.1 3504063 D 582899 CDS YP_003757551.1 300024940 9389356 complement(3505947..3507059) 1 NC_014313.1 KEGG: ccs:CCNA_01509 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; beta-ketoacyl-acyl-carrier-protein synthase III 3507059 9389356 Hden_3439 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl-acyl-carrier-protein synthase III YP_003757551.1 3505947 R 582899 CDS YP_003757552.1 300024941 9389357 complement(3507388..3508242) 1 NC_014313.1 KEGG: mno:Mnod_4423 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3508242 9389357 Hden_3440 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003757552.1 3507388 R 582899 CDS YP_003757553.1 300024942 9389358 3508555..3510858 1 NC_014313.1 PFAM: extracellular ligand-binding receptor; KEGG: bja:blr0080 hypothetical protein; extracellular ligand-binding receptor 3510858 9389358 Hden_3441 Hyphomicrobium denitrificans ATCC 51888 extracellular ligand-binding receptor YP_003757553.1 3508555 D 582899 CDS YP_003757554.1 300024943 9389359 3511124..3514306 1 NC_014313.1 PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4615 acriflavin resistance protein; acriflavin resistance protein 3514306 9389359 Hden_3442 Hyphomicrobium denitrificans ATCC 51888 acriflavin resistance protein YP_003757554.1 3511124 D 582899 CDS YP_003757555.1 300024944 9389360 3514296..3515513 1 NC_014313.1 KEGG: rpb:RPB_3608 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3515513 9389360 Hden_3443 Hyphomicrobium denitrificans ATCC 51888 RND family efflux transporter MFP subunit YP_003757555.1 3514296 D 582899 CDS YP_003757556.1 300024945 9389361 3515588..3515938 1 NC_014313.1 KEGG: sbi:SORBI_04g030110 hypothetical protein; hypothetical protein 3515938 9389361 Hden_3444 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757556.1 3515588 D 582899 CDS YP_003757557.1 300024946 9389362 complement(3516479..3517468) 1 NC_014313.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: pst:PSPTO_3616 hypothetical protein; peptidase C14 caspase catalytic subunit p20 3517468 9389362 Hden_3445 Hyphomicrobium denitrificans ATCC 51888 peptidase C14 caspase catalytic subunit p20 YP_003757557.1 3516479 R 582899 CDS YP_003757558.1 300024947 9389363 complement(3517468..3517857) 1 NC_014313.1 KEGG: vco:VC0395_0570 hypothetical protein; hypothetical protein 3517857 9389363 Hden_3446 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757558.1 3517468 R 582899 CDS YP_003757559.1 300024948 9389365 complement(3518557..3520290) 1 NC_014313.1 PFAM: HemY domain protein; KEGG: met:M446_4536 HemY domain-containing protein; HemY domain-containing protein 3520290 9389365 Hden_3447 Hyphomicrobium denitrificans ATCC 51888 HemY domain-containing protein YP_003757559.1 3518557 R 582899 CDS YP_003757560.1 300024949 9389366 complement(3520311..3522035) 1 NC_014313.1 KEGG: mrd:Mrad2831_2071 hypothetical protein; hypothetical protein 3522035 9389366 Hden_3448 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757560.1 3520311 R 582899 CDS YP_003757561.1 300024950 9389367 complement(3522157..3522897) 1 NC_014313.1 PFAM: uroporphyrinogen III synthase HEM4; KEGG: rsq:Rsph17025_4324 hypothetical protein; uroporphyrinogen III synthase HEM4 3522897 9389367 Hden_3449 Hyphomicrobium denitrificans ATCC 51888 uroporphyrinogen III synthase HEM4 YP_003757561.1 3522157 R 582899 CDS YP_003757562.1 300024951 9389368 complement(3522897..3523829) 1 NC_014313.1 KEGG: pde:Pden_3630 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase; porphobilinogen deaminase 3523829 9389368 Hden_3450 Hyphomicrobium denitrificans ATCC 51888 porphobilinogen deaminase YP_003757562.1 3522897 R 582899 CDS YP_003757563.1 300024952 9389369 3523941..3525044 1 NC_014313.1 PFAM: peptidase M22 glycoprotease; manually curated; KEGG: oan:Oant_0974 DNA-binding/iron metalloprotein/AP endonuclease; TIGRFAM: metalloendopeptidase, glycoprotease family; metalloendopeptidase, glycoprotease family 3525044 9389369 Hden_3451 Hyphomicrobium denitrificans ATCC 51888 metalloendopeptidase, glycoprotease family YP_003757563.1 3523941 D 582899 CDS YP_003757564.1 300024953 9389370 3525093..3526103 1 NC_014313.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pla:Plav_1343 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 3526103 9389370 Hden_3452 Hyphomicrobium denitrificans ATCC 51888 NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_003757564.1 3525093 D 582899 CDS YP_003757565.1 300024954 9389371 3526353..3526790 1 NC_014313.1 PFAM: protein of unknown function DUF55; KEGG: mes:Meso_3206 hypothetical protein; hypothetical protein 3526790 9389371 Hden_3453 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757565.1 3526353 D 582899 CDS YP_003757566.1 300024955 9389372 3526787..3527458 1 NC_014313.1 PFAM: ribosomal L11 methyltransferase; KEGG: xau:Xaut_1107 hypothetical protein; ribosomal L11 methyltransferase 3527458 9389372 Hden_3454 Hyphomicrobium denitrificans ATCC 51888 ribosomal L11 methyltransferase YP_003757566.1 3526787 D 582899 CDS YP_003757567.1 300024956 9389373 3527571..3529520 1 NC_014313.1 KEGG: xau:Xaut_1479 acetyl-CoA synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 3529520 9389373 Hden_3455 Hyphomicrobium denitrificans ATCC 51888 acetate/CoA ligase YP_003757567.1 3527571 D 582899 CDS YP_003757568.1 300024957 9389374 complement(3529517..3529738) 1 NC_014313.1 PFAM: protein of unknown function DUF1674; KEGG: jan:Jann_4039 hypothetical protein; hypothetical protein 3529738 9389374 Hden_3456 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757568.1 3529517 R 582899 CDS YP_003757569.1 300024958 9389375 3529866..3530864 1 NC_014313.1 PFAM: peptidase M48 Ste24p; KEGG: smd:Smed_3192 heat shock protein HtpX; peptidase M48 Ste24p 3530864 9389375 Hden_3457 Hyphomicrobium denitrificans ATCC 51888 peptidase M48 Ste24p YP_003757569.1 3529866 D 582899 CDS YP_003757570.1 300024959 9389376 3530866..3532272 1 NC_014313.1 KEGG: rpe:RPE_0028 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein 3532272 9389376 Hden_3458 Hyphomicrobium denitrificans ATCC 51888 sun protein YP_003757570.1 3530866 D 582899 CDS YP_003757571.1 300024960 9389377 3532354..3534051 1 NC_014313.1 PFAM: Heparinase II/III; KEGG: azc:AZC_4697 hypothetical protein; Heparinase II/III 3534051 9389377 Hden_3459 Hyphomicrobium denitrificans ATCC 51888 Heparinase II/III YP_003757571.1 3532354 D 582899 CDS YP_003757572.1 300024961 9389378 3534174..3535757 1 NC_014313.1 SMART: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: rpe:RPE_0026 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3535757 9389378 Hden_3460 Hyphomicrobium denitrificans ATCC 51888 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_003757572.1 3534174 D 582899 CDS YP_003757573.1 300024962 9389379 complement(3536010..3537470) 1 NC_014313.1 PFAM: major facilitator superfamily MFS_1; KEGG: oca:OCAR_4338 major facilitator superfamily MFS_1; major facilitator superfamily protein 3537470 9389379 Hden_3461 Hyphomicrobium denitrificans ATCC 51888 major facilitator superfamily protein YP_003757573.1 3536010 R 582899 CDS YP_003757574.1 300024963 9389380 complement(3537533..3538153) 1 NC_014313.1 PFAM: protein of unknown function DUF477; KEGG: bid:Bind_3480 hypothetical protein; hypothetical protein 3538153 9389380 Hden_3462 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757574.1 3537533 R 582899 CDS YP_003757575.1 300024964 9389381 complement(3538189..3539031) 1 NC_014313.1 PFAM: protein of unknown function DUF477; KEGG: ccs:CCNA_03569 hypothetical protein; hypothetical protein 3539031 9389381 Hden_3463 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757575.1 3538189 R 582899 CDS YP_003757576.1 300024965 9389382 complement(3539068..3539688) 1 NC_014313.1 PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein; LemA family protein 3539688 9389382 Hden_3464 Hyphomicrobium denitrificans ATCC 51888 LemA family protein YP_003757576.1 3539068 R 582899 CDS YP_003757577.1 300024966 9389383 complement(3540291..3540503) 1 NC_014313.1 KEGG: oan:Oant_4124 hypothetical protein; hypothetical protein 3540503 9389383 Hden_3465 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757577.1 3540291 R 582899 CDS YP_003757578.1 300024967 9389384 complement(3540679..3541017) 1 NC_014313.1 KEGG: dya:Dyak_GE15943 GE15943 gene product from transcript GE15943-RA; hypothetical protein 3541017 9389384 Hden_3466 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757578.1 3540679 R 582899 CDS YP_003757579.1 300024968 9389385 complement(3541149..3541550) 1 NC_014313.1 KEGG: nvi:100121963 similar to conserved hypothetical protein; hypothetical protein 3541550 9389385 Hden_3467 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757579.1 3541149 R 582899 CDS YP_003757580.1 300024969 9389387 3542060..3542599 1 NC_014313.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bmr:BMI_II888 hypothetical protein; YbaK/prolyl-tRNA synthetase associated protein 3542599 9389387 Hden_3468 Hyphomicrobium denitrificans ATCC 51888 YbaK/prolyl-tRNA synthetase associated protein YP_003757580.1 3542060 D 582899 CDS YP_003757581.1 300024970 9389388 3542605..3543519 1 NC_014313.1 KEGG: pla:Plav_1312 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; thioredoxin 3543519 9389388 Hden_3469 Hyphomicrobium denitrificans ATCC 51888 thioredoxin YP_003757581.1 3542605 D 582899 CDS YP_003757582.1 300024971 9389389 3543531..3544232 1 NC_014313.1 KEGG: mno:Mnod_5189 peptidase S16 lon domain protein; PFAM: peptidase S16; SMART: peptidase S16 lon domain protein; peptidase S16 3544232 9389389 Hden_3470 Hyphomicrobium denitrificans ATCC 51888 peptidase S16 YP_003757582.1 3543531 D 582899 CDS YP_003757583.1 300024972 9389390 3544262..3544489 1 NC_014313.1 PFAM: protein of unknown function DUF343; KEGG: bid:Bind_2731 hypothetical protein; hypothetical protein 3544489 9389390 Hden_3471 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757583.1 3544262 D 582899 CDS YP_003757584.1 300024973 9389391 3544648..3546603 1 NC_014313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: azl:AZL_024550 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; PAS/PAC sensor hybrid histidine kinase 3546603 9389391 Hden_3472 Hyphomicrobium denitrificans ATCC 51888 PAS/PAC sensor hybrid histidine kinase YP_003757584.1 3544648 D 582899 CDS YP_003757585.1 300024974 9389392 3546683..3547651 1 NC_014313.1 KEGG: mrd:Mrad2831_1116 hypothetical protein; hypothetical protein 3547651 9389392 Hden_3473 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757585.1 3546683 D 582899 CDS YP_003757586.1 300024975 9389393 3547898..3550738 1 NC_014313.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: pla:Plav_3599 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS; MutS III domain protein; DNA mismatch repair protein MutS 3550738 9389393 Hden_3474 Hyphomicrobium denitrificans ATCC 51888 DNA mismatch repair protein MutS YP_003757586.1 3547898 D 582899 CDS YP_003757587.1 300024976 9389394 3550735..3553533 1 NC_014313.1 SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: mlo:mll5321 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; UTP-GlnB uridylyltransferase 3553533 9389394 Hden_3475 Hyphomicrobium denitrificans ATCC 51888 UTP-GlnB uridylyltransferase YP_003757587.1 3550735 D 582899 CDS YP_003757588.1 300024977 9389395 3553636..3555222 1 NC_014313.1 KEGG: pla:Plav_3604 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 3555222 9389395 Hden_3476 Hyphomicrobium denitrificans ATCC 51888 integral membrane protein MviN YP_003757588.1 3553636 D 582899 CDS YP_003757589.1 300024978 9389396 3555292..3556329 1 NC_014313.1 TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: oca:OCAR_4526 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 3556329 9389396 Hden_3477 Hyphomicrobium denitrificans ATCC 51888 tryptophanyl-tRNA synthetase YP_003757589.1 3555292 D 582899 CDS YP_003757590.1 300024979 9389397 3556329..3556895 1 NC_014313.1 PFAM: UspA domain protein; KEGG: mes:Meso_4036 hypothetical protein; UspA domain-containing protein 3556895 9389397 Hden_3478 Hyphomicrobium denitrificans ATCC 51888 UspA domain-containing protein YP_003757590.1 3556329 D 582899 CDS YP_003757591.1 300024980 9389398 3557041..3557595 1 NC_014313.1 PFAM: Scaffold protein Nfu/NifU ; nitrogen-fixing NifU domain protein; KEGG: bbt:BBta_0040 NifU protein; Scaffold protein Nfu/NifU 3557595 9389398 Hden_3479 Hyphomicrobium denitrificans ATCC 51888 Scaffold protein Nfu/NifU YP_003757591.1 3557041 D 582899 CDS YP_003757592.1 300024981 9389399 3557670..3558260 1 NC_014313.1 PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 hypothetical protein; nitroreductase 3558260 9389399 Hden_3480 Hyphomicrobium denitrificans ATCC 51888 nitroreductase YP_003757592.1 3557670 D 582899 CDS YP_003757593.1 300024982 9389400 3558272..3558970 1 NC_014313.1 PFAM: peptidase M22 glycoprotease; KEGG: azc:AZC_4704 glycoprotease; peptidase M22 glycoprotease 3558970 9389400 Hden_3481 Hyphomicrobium denitrificans ATCC 51888 peptidase M22 glycoprotease YP_003757593.1 3558272 D 582899 CDS YP_003757594.1 300024983 9389401 3558967..3559455 1 NC_014313.1 KEGG: azl:AZL_000470 ribosomal-protein-alanine N-acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 3559455 9389401 Hden_3482 Hyphomicrobium denitrificans ATCC 51888 ribosomal-protein-alanine acetyltransferase YP_003757594.1 3558967 D 582899 CDS YP_003757595.1 300024984 9389402 3559569..3560027 1 NC_014313.1 PFAM: ferric-uptake regulator; KEGG: cak:Caul_0013 ferric uptake regulator family protein; Fur family ferric uptake regulator 3560027 9389402 Hden_3483 Hyphomicrobium denitrificans ATCC 51888 Fur family ferric uptake regulator YP_003757595.1 3559569 D 582899 CDS YP_003757596.1 300024985 9389403 3560024..3560914 1 NC_014313.1 KEGG: pla:Plav_3616 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3560914 9389403 Hden_3484 Hyphomicrobium denitrificans ATCC 51888 phospholipid/glycerol acyltransferase YP_003757596.1 3560024 D 582899 CDS YP_003757597.1 300024986 9389404 3560986..3562335 1 NC_014313.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: protein of unknown function UPF0004 ; radical SAM protein; KEGG: mno:Mnod_0235 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 3562335 9389404 Hden_3485 Hyphomicrobium denitrificans ATCC 51888 MiaB family RNA modification protein YP_003757597.1 3560986 D 582899 CDS YP_003757598.1 300024987 9389405 3562461..3563462 1 NC_014313.1 PFAM: PhoH family protein; KEGG: atc:AGR_C_625 PhoH-like protein; PhoH family protein 3563462 9389405 Hden_3486 Hyphomicrobium denitrificans ATCC 51888 PhoH family protein YP_003757598.1 3562461 D 582899 CDS YP_003757599.1 300024988 9389406 3563462..3563977 1 NC_014313.1 PFAM: protein of unknown function UPF0054; KEGG: azc:AZC_0010 hypothetical protein; hypothetical protein 3563977 9389406 Hden_3487 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757599.1 3563462 D 582899 CDS YP_003757600.1 300024989 9389407 3563993..3565024 1 NC_014313.1 KEGG: sme:SMc01112 hypothetical protein; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; CBS domain containing protein 3565024 9389407 Hden_3488 Hyphomicrobium denitrificans ATCC 51888 CBS domain containing protein YP_003757600.1 3563993 D 582899 CDS YP_003757601.1 300024990 9389408 3565024..3566667 1 NC_014313.1 KEGG: rpa:RPA0444 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3566667 9389408 Hden_3489 Hyphomicrobium denitrificans ATCC 51888 apolipoprotein N-acyltransferase YP_003757601.1 3565024 D 582899 CDS YP_003757602.1 300024991 9389409 3566779..3567243 1 NC_014313.1 KEGG: rhi:NGR_c00470 transcriptional regulator; PFAM: hypothetical protein; SMART: hypothetical protein; XRE family transcriptional regulator 3567243 9389409 Hden_3490 Hyphomicrobium denitrificans ATCC 51888 XRE family transcriptional regulator YP_003757602.1 3566779 D 582899 CDS YP_003757603.1 300024992 9389410 3567457..3568662 1 NC_014313.1 TIGRFAM: S-adenosylmethionine synthetase; KEGG: rpb:RPB_1588 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3568662 9389410 Hden_3491 Hyphomicrobium denitrificans ATCC 51888 S-adenosylmethionine synthetase YP_003757603.1 3567457 D 582899 CDS YP_003757604.1 300024993 9389411 3568747..3569538 1 NC_014313.1 KEGG: pzu:PHZ_c3447 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3569538 9389411 Hden_3492 Hyphomicrobium denitrificans ATCC 51888 tRNA (guanine-N(7)-)-methyltransferase YP_003757604.1 3568747 D 582899 CDS YP_003757605.1 300024994 9389412 3569665..3570306 1 NC_014313.1 PFAM: protein of unknown function DUF150; KEGG: bmc:BAbS19_I20230 hypothetical protein; hypothetical protein 3570306 9389412 Hden_3493 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757605.1 3569665 D 582899 CDS YP_003757606.1 300024995 9389413 3570311..3571942 1 NC_014313.1 TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; KEGG: msl:Msil_2297 NusA antitermination factor; SMART: KH domain protein; NusA antitermination factor 3571942 9389413 Hden_3494 Hyphomicrobium denitrificans ATCC 51888 NusA antitermination factor YP_003757606.1 3570311 D 582899 CDS YP_003757607.1 300024996 9389414 3572038..3572655 1 NC_014313.1 PFAM: protein of unknown function DUF448; KEGG: oan:Oant_0748 hypothetical protein; hypothetical protein 3572655 9389414 Hden_3495 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757607.1 3572038 D 582899 CDS YP_003757608.1 300024997 9389415 3572667..3575393 1 NC_014313.1 KEGG: bja:bll0783 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; elongation factor Tu domain 2 protein; translation initiation factor IF-2 3575393 9389415 Hden_3496 Hyphomicrobium denitrificans ATCC 51888 translation initiation factor IF-2 YP_003757608.1 3572667 D 582899 CDS YP_003757609.1 300024998 9389416 3575546..3576088 1 NC_014313.1 KEGG: cpi:Cpin_0371 hypothetical protein; hypothetical protein 3576088 9389416 Hden_3497 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757609.1 3575546 D 582899 CDS YP_003757610.1 300024999 9389417 3576103..3576501 1 NC_014313.1 KEGG: mno:Mnod_4619 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; ribosome-binding factor A 3576501 9389417 Hden_3498 Hyphomicrobium denitrificans ATCC 51888 ribosome-binding factor A YP_003757610.1 3576103 D 582899 CDS YP_003757611.1 300025000 9389418 3576507..3577427 1 NC_014313.1 KEGG: oca:OCAR_4505 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B 3577427 9389418 Hden_3499 Hyphomicrobium denitrificans ATCC 51888 tRNA pseudouridine synthase B YP_003757611.1 3576507 D 582899 CDS YP_003757612.1 300025001 9389419 3577459..3578283 1 NC_014313.1 PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: dac:Daci_2795 3''-kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 3578283 9389419 Hden_3500 Hyphomicrobium denitrificans ATCC 51888 aminoglycoside/hydroxyurea antibiotic resistance kinase YP_003757612.1 3577459 D 582899 CDS YP_003757613.1 300025002 9389420 3578466..3578747 1 NC_014313.1 KEGG: sit:TM1040_0081 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 3578747 9389420 Hden_3501 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S15 YP_003757613.1 3578466 D 582899 CDS YP_003757614.1 300025003 9389421 3578919..3581120 1 NC_014313.1 SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: msl:Msil_0268 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; polynucleotide phosphorylase, phosphorolytic RNA-binding; polyribonucleotide nucleotidyltransferase 3581120 9389421 Hden_3502 Hyphomicrobium denitrificans ATCC 51888 polyribonucleotide nucleotidyltransferase YP_003757614.1 3578919 D 582899 CDS YP_003757615.1 300025004 9389422 complement(3581424..3581684) 1 NC_014313.1 KEGG: sgr:SGR_268 secreted metalloprotease; hypothetical protein 3581684 9389422 Hden_3503 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757615.1 3581424 R 582899 CDS YP_003757616.1 300025005 9389423 complement(3581839..3582684) 1 NC_014313.1 KEGG: rce:RC1_3325 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 3582684 9389423 Hden_3504 Hyphomicrobium denitrificans ATCC 51888 glutamate racemase YP_003757616.1 3581839 R 582899 CDS YP_003757617.1 300025006 9389424 complement(3582731..3583600) 1 NC_014313.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_4644 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 3583600 9389424 Hden_3505 Hyphomicrobium denitrificans ATCC 51888 short-chain dehydrogenase/reductase SDR YP_003757617.1 3582731 R 582899 CDS YP_003757618.1 300025007 9389425 complement(3583735..3584967) 1 NC_014313.1 PFAM: beta-ketoacyl synthase; KEGG: oca:OCAR_4498 3-oxoacyl-(acyl carrier protein) synthase I; beta-ketoacyl synthase 3584967 9389425 Hden_3506 Hyphomicrobium denitrificans ATCC 51888 beta-ketoacyl synthase YP_003757618.1 3583735 R 582899 CDS YP_003757619.1 300025008 9389426 complement(3585031..3585555) 1 NC_014313.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: rpc:RPC_0349 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3585555 9389426 Hden_3507 Hyphomicrobium denitrificans ATCC 51888 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA YP_003757619.1 3585031 R 582899 CDS YP_003757620.1 300025009 9389427 3585820..3586266 1 NC_014313.1 PFAM: ferric-uptake regulator; KEGG: ret:RHE_CH00106 iron transcriptional regulator protein; Fur family ferric uptake regulator 3586266 9389427 Hden_3508 Hyphomicrobium denitrificans ATCC 51888 Fur family ferric uptake regulator YP_003757620.1 3585820 D 582899 CDS YP_003757621.1 300025010 9389428 complement(3586292..3586849) 1 NC_014313.1 PFAM: protein of unknown function DUF1058; KEGG: msl:Msil_2486 protein of unknown function DUF1058; hypothetical protein 3586849 9389428 Hden_3509 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757621.1 3586292 R 582899 CDS YP_003757622.1 300025011 9389429 3587063..3588061 1 NC_014313.1 KEGG: mag:amb0195 lactate dehydrogenase and related dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; glyoxylate reductase 3588061 9389429 Hden_3510 Hyphomicrobium denitrificans ATCC 51888 glyoxylate reductase YP_003757622.1 3587063 D 582899 CDS YP_003757623.1 300025012 9389430 complement(3588101..3588937) 1 NC_014313.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: xau:Xaut_4128 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3588937 9389430 Hden_3511 Hyphomicrobium denitrificans ATCC 51888 UBA/THIF-type NAD/FAD binding protein YP_003757623.1 3588101 R 582899 CDS YP_003757624.1 300025013 9389431 complement(3588958..3589959) 1 NC_014313.1 KEGG: mno:Mnod_5186 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; cysteine synthase 3589959 9389431 Hden_3512 Hyphomicrobium denitrificans ATCC 51888 cysteine synthase YP_003757624.1 3588958 R 582899 CDS YP_003757625.1 300025014 9389432 complement(3590092..3590670) 1 NC_014313.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: bja:bll0758 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 3590670 9389432 Hden_3513 Hyphomicrobium denitrificans ATCC 51888 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_003757625.1 3590092 R 582899 CDS YP_003757626.1 300025015 9389433 complement(3590667..3591947) 1 NC_014313.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: xau:Xaut_0078 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 3591947 9389433 Hden_3514 Hyphomicrobium denitrificans ATCC 51888 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_003757626.1 3590667 R 582899 CDS YP_003757627.1 300025016 9389434 3592070..3592612 1 NC_014313.1 PFAM: protein of unknown function DUF461; KEGG: rpb:RPB_2594 hypothetical protein; hypothetical protein 3592612 9389434 Hden_3515 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757627.1 3592070 D 582899 CDS YP_003757628.1 300025017 9389435 3593066..3594994 1 NC_014313.1 KEGG: afl:Aflv_2264 sodium:solute symporter; TIGRFAM: solute symporter protein; PFAM: Na+/solute symporter; solute symporter protein 3594994 9389435 Hden_3516 Hyphomicrobium denitrificans ATCC 51888 solute symporter protein YP_003757628.1 3593066 D 582899 CDS YP_003757629.1 300025018 9389436 3595063..3596559 1 NC_014313.1 KEGG: bte:BTH_I0600 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 3596559 9389436 Hden_3517 Hyphomicrobium denitrificans ATCC 51888 glycerol-3-phosphate dehydrogenase YP_003757629.1 3595063 D 582899 CDS YP_003757630.1 300025019 9389437 complement(3596576..3597100) 1 NC_014313.1 KEGG: msl:Msil_0973 hypothetical protein; hypothetical protein 3597100 9389437 Hden_3518 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757630.1 3596576 R 582899 CDS YP_003757631.1 300025020 9389438 complement(3597386..3598558) 1 NC_014313.1 KEGG: avi:Avi_0827 two component sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase 3598558 9389438 Hden_3519 Hyphomicrobium denitrificans ATCC 51888 histidine kinase YP_003757631.1 3597386 R 582899 CDS YP_003757632.1 300025021 9389439 3598870..3601500 1 NC_014313.1 PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein; hypothetical protein 3601500 9389439 Hden_3520 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757632.1 3598870 D 582899 CDS YP_003757633.1 300025022 9389440 3601490..3602875 1 NC_014313.1 PFAM: virulence factor family protein; KEGG: virulence factor family protein; virulence factor family protein 3602875 9389440 Hden_3521 Hyphomicrobium denitrificans ATCC 51888 virulence factor family protein YP_003757633.1 3601490 D 582899 CDS YP_003757634.1 300025023 9389442 complement(3603167..3604288) 1 NC_014313.1 PFAM: acyltransferase 3; KEGG: sun:SUN_0329 hypothetical protein; acyltransferase 3 3604288 9389442 Hden_3522 Hyphomicrobium denitrificans ATCC 51888 acyltransferase 3 YP_003757634.1 3603167 R 582899 CDS YP_003757635.1 300025024 9389443 complement(3604424..3605083) 1 NC_014313.1 PFAM: rhomboid family protein; KEGG: hau:Haur_2553 rhomboid family protein; rhomboid family protein 3605083 9389443 Hden_3523 Hyphomicrobium denitrificans ATCC 51888 rhomboid family protein YP_003757635.1 3604424 R 582899 CDS YP_003757636.1 300025025 9389444 complement(3605113..3605892) 1 NC_014313.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: pla:Plav_1742 ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase 3605892 9389444 Hden_3524 Hyphomicrobium denitrificans ATCC 51888 ubiquinone biosynthesis O-methyltransferase YP_003757636.1 3605113 R 582899 CDS YP_003757637.1 300025026 9389445 3606101..3607363 1 NC_014313.1 KEGG: pla:Plav_1743 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 3607363 9389445 Hden_3525 Hyphomicrobium denitrificans ATCC 51888 aspartate kinase YP_003757637.1 3606101 D 582899 CDS YP_003757638.1 300025027 9389446 3607435..3609729 1 NC_014313.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: azc:AZC_4491 phosphoenolpyruvate-protein phosphotransferase; SMART: GAF domain protein; PTSINtr with GAF domain, PtsP 3609729 9389446 Hden_3526 Hyphomicrobium denitrificans ATCC 51888 PTSINtr with GAF domain, PtsP YP_003757638.1 3607435 D 582899 CDS YP_003757639.1 300025028 9389447 3609817..3610530 1 NC_014313.1 KEGG: pla:Plav_3060 SH3 type 3 domain-containing protein; hypothetical protein 3610530 9389447 Hden_3527 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757639.1 3609817 D 582899 CDS YP_003757640.1 300025029 9389448 3610593..3611672 1 NC_014313.1 KEGG: mes:Meso_2999 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 3611672 9389448 Hden_3528 Hyphomicrobium denitrificans ATCC 51888 peptide chain release factor 1 YP_003757640.1 3610593 D 582899 CDS YP_003757641.1 300025030 9389449 3611686..3612573 1 NC_014313.1 KEGG: nha:Nham_0469 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase, release factor-specific 3612573 9389449 Hden_3529 Hyphomicrobium denitrificans ATCC 51888 protein-(glutamine-N5) methyltransferase, release factor-specific YP_003757641.1 3611686 D 582899 CDS YP_003757642.1 300025031 9389450 3612539..3612742 1 NC_014313.1 hypothetical protein 3612742 9389450 Hden_3530 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757642.1 3612539 D 582899 CDS YP_003757643.1 300025032 9389451 3613014..3613976 1 NC_014313.1 KEGG: mno:Mnod_0114 hypothetical protein; hypothetical protein 3613976 9389451 Hden_3531 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757643.1 3613014 D 582899 CDS YP_003757644.1 300025033 9389452 3614402..3616996 1 NC_014313.1 TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: rpd:RPD_4095 ATPase AAA-2; SMART: ATPase AAA; ATP-dependent chaperone ClpB 3616996 9389452 Hden_3532 Hyphomicrobium denitrificans ATCC 51888 ATP-dependent chaperone ClpB YP_003757644.1 3614402 D 582899 CDS YP_003757645.1 300025034 9389453 complement(3617102..3617797) 1 NC_014313.1 PFAM: porin; KEGG: oan:Oant_0133 porin; porin 3617797 9389453 Hden_3533 Hyphomicrobium denitrificans ATCC 51888 porin YP_003757645.1 3617102 R 582899 CDS YP_003757646.1 300025035 9389454 3617910..3619028 1 NC_014313.1 SMART: regulatory protein LuxR; KEGG: mex:Mext_1995 regulatory protein LuxR; LuxR family transcriptional regulator 3619028 9389454 Hden_3534 Hyphomicrobium denitrificans ATCC 51888 LuxR family transcriptional regulator YP_003757646.1 3617910 D 582899 CDS YP_003757647.1 300025036 9389455 3619207..3619608 1 NC_014313.1 KEGG: mno:Mnod_1552 VrrB protein; hypothetical protein 3619608 9389455 Hden_3535 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757647.1 3619207 D 582899 CDS YP_003757648.1 300025037 9389456 complement(3619700..3619942) 1 NC_014313.1 KEGG: nha:Nham_0174 hypothetical protein; hypothetical protein 3619942 9389456 Hden_3536 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757648.1 3619700 R 582899 CDS YP_003757649.1 300025038 9389457 3620205..3621602 1 NC_014313.1 PFAM: citrate transporter; KEGG: azl:AZL_d00120 hypothetical protein; citrate transporter 3621602 9389457 Hden_3537 Hyphomicrobium denitrificans ATCC 51888 citrate transporter YP_003757649.1 3620205 D 582899 CDS YP_003757650.1 300025039 9389458 complement(3621792..3623819) 1 NC_014313.1 PFAM: peptidase M23; KEGG: bbt:BBta_1196 metalloendopeptidase; peptidase M23 3623819 9389458 Hden_3538 Hyphomicrobium denitrificans ATCC 51888 peptidase M23 YP_003757650.1 3621792 R 582899 CDS YP_003757651.1 300025040 9389464 3630436..3630822 1 NC_014313.1 KEGG: azl:AZL_015580 hypothetical protein; hypothetical protein 3630822 9389464 Hden_3539 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757651.1 3630436 D 582899 CDS YP_003757652.1 300025041 9389465 3630830..3631660 1 NC_014313.1 PFAM: iron permease FTR1; KEGG: azc:AZC_2743 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 3631660 9389465 Hden_3540 Hyphomicrobium denitrificans ATCC 51888 iron permease FTR1 YP_003757652.1 3630830 D 582899 CDS YP_003757653.1 300025042 9389466 complement(3631718..3632185) 1 NC_014313.1 PFAM: protein of unknown function DUF1348; KEGG: aba:acid345_2217 hypothetical protein; hypothetical protein 3632185 9389466 Hden_3541 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757653.1 3631718 R 582899 CDS YP_003757654.1 300025043 9389467 3632301..3632633 1 NC_014313.1 KEGG: bid:Bind_1265 alkylhydroperoxidase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein 3632633 9389467 Hden_3542 Hyphomicrobium denitrificans ATCC 51888 alkylhydroperoxidase like protein YP_003757654.1 3632301 D 582899 CDS YP_003757655.1 300025044 9389468 complement(3632618..3634210) 1 NC_014313.1 KEGG: bhe:BH00390 ubiquinone biosynthesis protein AarF; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC transporter; 2-polyprenylphenol 6-hydroxylase 3634210 9389468 Hden_3543 Hyphomicrobium denitrificans ATCC 51888 2-polyprenylphenol 6-hydroxylase YP_003757655.1 3632618 R 582899 CDS YP_003757656.1 300025045 9389469 complement(3634425..3634718) 1 NC_014313.1 KEGG: ure:UREG_02770 hypothetical protein; hypothetical protein 3634718 9389469 Hden_3544 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757656.1 3634425 R 582899 CDS YP_003757657.1 300025046 9389470 complement(3634845..3635627) 1 NC_014313.1 KEGG: rpe:RPE_0470 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 3635627 9389470 Hden_3545 Hyphomicrobium denitrificans ATCC 51888 ubiquinone/menaquinone biosynthesis methyltransferase YP_003757657.1 3634845 R 582899 CDS YP_003757658.1 300025047 9389471 3635705..3636586 1 NC_014313.1 SMART: Formamidopyrimidine-DNA glycosylase catalytic domain protein; TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: msl:Msil_3033 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 3636586 9389471 Hden_3546 Hyphomicrobium denitrificans ATCC 51888 formamidopyrimidine-DNA glycosylase YP_003757658.1 3635705 D 582899 CDS YP_003757659.1 300025048 9389472 complement(3636592..3637206) 1 NC_014313.1 KEGG: sal:Sala_0839 hypothetical protein; hypothetical protein 3637206 9389472 Hden_3547 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757659.1 3636592 R 582899 CDS YP_003757660.1 300025049 9389473 complement(3637246..3637830) 1 NC_014313.1 KEGG: kra:Krad_4256 drug resistance transporter EmrB/QacA subfamily; hypothetical protein 3637830 9389473 Hden_3548 Hyphomicrobium denitrificans ATCC 51888 hypothetical protein YP_003757660.1 3637246 R 582899 CDS YP_003757661.1 300025050 9389474 3638132..3638398 1 NC_014313.1 KEGG: smd:Smed_0001 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 3638398 9389474 Hden_3549 Hyphomicrobium denitrificans ATCC 51888 30S ribosomal protein S20 YP_003757661.1 3638132 D 582899 CDS