-- dump date 20120504_150537 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_758735.1 114797376 4287307 258..1100 1 NC_008358.1 identified by similarity to GB:CAE25742.1; match to protein family HMM PF03618; hypothetical protein 1100 4287307 HNE_0001 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758735.1 258 D 228405 CDS YP_758736.1 114798603 4290506 1097..1693 1 NC_008358.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; putative maf protein 1693 4290506 HNE_0002 Hyphomonas neptunium ATCC 15444 putative maf protein YP_758736.1 1097 D 228405 CDS YP_758737.1 114799600 4289096 1690..2502 1 NC_008358.1 identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 2502 aroE 4289096 aroE Hyphomonas neptunium ATCC 15444 shikimate 5-dehydrogenase YP_758737.1 1690 D 228405 CDS YP_758738.1 114797191 4287062 2499..3107 1 NC_008358.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3107 coaE 4287062 coaE Hyphomonas neptunium ATCC 15444 dephospho-CoA kinase YP_758738.1 2499 D 228405 CDS YP_758739.1 114798147 4290380 3104..3802 1 NC_008358.1 identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 3802 dnaQ 4290380 dnaQ Hyphomonas neptunium ATCC 15444 DNA polymerase III subunit epsilon YP_758739.1 3104 D 228405 CDS YP_758740.1 114798742 4287977 complement(3810..4310) 1 NC_008358.1 identified by match to protein family HMM PF02556; match to protein family HMM TIGR00809; protein-export protein SecB 4310 secB 4287977 secB Hyphomonas neptunium ATCC 15444 protein-export protein SecB YP_758740.1 3810 R 228405 CDS YP_758741.1 114799709 4289127 4445..5059 1 NC_008358.1 identified by match to protein family HMM PF04280; Tim44 domain-containing protein 5059 4289127 HNE_0007 Hyphomonas neptunium ATCC 15444 Tim44 domain-containing protein YP_758741.1 4445 D 228405 CDS YP_758742.1 114797762 4288220 5111..6349 1 NC_008358.1 identified by similarity to GB:AAF42553.1; match to protein family HMM PF03562; match to protein family HMM PF06725; putative transglycosylase MltA 6349 4288220 HNE_0008 Hyphomonas neptunium ATCC 15444 putative transglycosylase MltA YP_758742.1 5111 D 228405 CDS YP_758743.1 114798383 4288375 6355..6885 1 NC_008358.1 identified by match to protein family HMM PF01713; Smr domain-containing protein 6885 4288375 HNE_0009 Hyphomonas neptunium ATCC 15444 Smr domain-containing protein YP_758743.1 6355 D 228405 CDS YP_758744.1 114798843 4287807 complement(6941..7612) 1 NC_008358.1 identified by similarity to PIR:D97688; match to protein family HMM PF06242; hypothetical protein 7612 4287807 HNE_0010 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758744.1 6941 R 228405 CDS YP_758745.1 114799986 4290201 complement(7751..8725) 1 NC_008358.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824; NAD(P)H quinone oxidoreductase PIG3 family protein 8725 4290201 HNE_0011 Hyphomonas neptunium ATCC 15444 NAD(P)H quinone oxidoreductase PIG3 family protein YP_758745.1 7751 R 228405 CDS YP_758746.1 114798553 4287397 8831..9016 1 NC_008358.1 identified by similarity to GB:CAE26360.1; hypothetical protein 9016 4287397 HNE_0012 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758746.1 8831 D 228405 CDS YP_758747.1 114798262 4287242 9083..9625 1 NC_008358.1 identified by similarity to GB:AAK25257.1; match to protein family HMM PF07323; hypothetical protein 9625 4287242 HNE_0013 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758747.1 9083 D 228405 CDS YP_758748.1 114800535 4288880 complement(9666..10274) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 10274 4288880 HNE_0014 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_758748.1 9666 R 228405 CDS YP_758749.1 114797544 4287379 10429..11052 1 NC_008358.1 identified by match to protein family HMM PF00484; carbonic anhydrase 11052 4287379 HNE_0015 Hyphomonas neptunium ATCC 15444 carbonic anhydrase YP_758749.1 10429 D 228405 CDS YP_758750.1 114798033 4287188 complement(11123..11662) 1 NC_008358.1 identified by match to protein family HMM PF00719; inorganic pyrophosphatase 11662 ppa 4287188 ppa Hyphomonas neptunium ATCC 15444 inorganic pyrophosphatase YP_758750.1 11123 R 228405 CDS YP_758751.1 114799488 4289179 complement(11772..12671) 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 12671 4289179 HNE_0017 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_758751.1 11772 R 228405 CDS YP_758752.1 114799979 4290194 12790..13515 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 13515 4290194 HNE_0018 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_758752.1 12790 D 228405 CDS YP_758753.1 114800170 4290014 13582..14001 1 NC_008358.1 identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein 14001 4290014 HNE_0019 Hyphomonas neptunium ATCC 15444 carboxymuconolactone decarboxylase domain-containing protein YP_758753.1 13582 D 228405 CDS YP_758754.1 114799370 4288841 13998..14339 1 NC_008358.1 identified by similarity to PIR:AC2682; hypothetical protein 14339 4288841 HNE_0020 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758754.1 13998 D 228405 CDS YP_758755.1 114800166 4290010 complement(14352..14963) 1 NC_008358.1 identified by match to protein family HMM TIGR02466; hypothetical protein 14963 4290010 HNE_0021 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758755.1 14352 R 228405 CDS YP_758756.1 114800114 4289997 complement(14993..15475) 1 NC_008358.1 GTP-binding protein 15475 4289997 HNE_0022 Hyphomonas neptunium ATCC 15444 GTP-binding protein YP_758756.1 14993 R 228405 CDS YP_758757.1 114797927 4287901 complement(15513..15899) 1 NC_008358.1 hypothetical protein 15899 4287901 HNE_0023 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758757.1 15513 R 228405 CDS YP_758758.1 114799580 4289076 complement(15919..16362) 1 NC_008358.1 identified by similarity to GB:BAC48418.1; hypothetical protein 16362 4289076 HNE_0024 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758758.1 15919 R 228405 CDS YP_758759.1 114797696 4289346 complement(16377..17000) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 17000 4289346 HNE_0025 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_758759.1 16377 R 228405 CDS YP_758760.1 114800461 4288203 complement(17211..18095) 1 NC_008358.1 identified by similarity to GB:AAK24228.1; hypothetical protein 18095 4288203 HNE_0026 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758760.1 17211 R 228405 CDS YP_758761.1 114798480 4288763 18285..18770 1 NC_008358.1 identified by similarity to SP:P29209; match to protein family HMM PF00011; 16 kDa heat shock protein A 18770 4288763 HNE_0027 Hyphomonas neptunium ATCC 15444 16 kDa heat shock protein A YP_758761.1 18285 D 228405 CDS YP_758762.1 114797893 4288081 complement(18823..19851) 1 NC_008358.1 identified by similarity to PIR:S76871; hypothetical protein 19851 4288081 HNE_0028 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758762.1 18823 R 228405 CDS YP_758763.1 114800480 4289433 19981..21030 1 NC_008358.1 identified by similarity to SP:Q9R9N1; match to protein family HMM PF00534; glycosyl transferase family protein 21030 4289433 HNE_0029 Hyphomonas neptunium ATCC 15444 glycosyl transferase family protein YP_758763.1 19981 D 228405 CDS YP_758764.1 114798109 4289604 complement(21031..21489) 1 NC_008358.1 identified by match to protein family HMM PF00383; riboflavin biosynthesis protein RibD domain-containing protein 21489 4289604 HNE_0030 Hyphomonas neptunium ATCC 15444 riboflavin biosynthesis protein RibD domain-containing protein YP_758764.1 21031 R 228405 CDS YP_758765.1 114797148 4288365 complement(21486..22199) 1 NC_008358.1 identified by similarity to SP:P30798; match to protein family HMM PF00300; match to protein family HMM TIGR01258; phosphoglycerate mutase 22199 4288365 HNE_0031 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase YP_758765.1 21486 R 228405 CDS YP_758766.1 114800103 4289986 complement(22276..23418) 1 NC_008358.1 identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase 23418 4289986 HNE_0032 Hyphomonas neptunium ATCC 15444 N-acylglucosamine 2-epimerase YP_758766.1 22276 R 228405 CDS YP_758767.1 114797256 4288454 23546..24124 1 NC_008358.1 hypothetical protein 24124 4288454 HNE_0033 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758767.1 23546 D 228405 CDS YP_758768.1 114799975 4290190 24240..26420 1 NC_008358.1 identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897; prolyl oligopeptidase 26420 4290190 HNE_0034 Hyphomonas neptunium ATCC 15444 prolyl oligopeptidase YP_758768.1 24240 D 228405 CDS YP_758769.1 114799210 4289579 26519..27115 1 NC_008358.1 identified by similarity to GB:CAH11471.1; hypothetical protein 27115 4289579 HNE_0035 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758769.1 26519 D 228405 CDS YP_758770.1 114799508 4288901 27293..28768 1 NC_008358.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 28768 ffh 4288901 ffh Hyphomonas neptunium ATCC 15444 signal recognition particle protein YP_758770.1 27293 D 228405 CDS YP_758771.1 114800523 4288868 28765..29076 1 NC_008358.1 identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795; chorismate mutase 29076 4288868 HNE_0037 Hyphomonas neptunium ATCC 15444 chorismate mutase YP_758771.1 28765 D 228405 CDS YP_758772.1 114799489 4289180 29117..29560 1 NC_008358.1 identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 29560 rpsP 4289180 rpsP Hyphomonas neptunium ATCC 15444 30S ribosomal protein S16 YP_758772.1 29117 D 228405 CDS YP_758773.1 114798513 4290317 complement(29676..31655) 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 31655 4290317 HNE_0039 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_758773.1 29676 R 228405 CDS YP_758774.1 114797587 4286992 31948..32811 1 NC_008358.1 identified by match to protein family HMM PF00030; beta/gamma crystallin family protein 32811 4286992 HNE_0040 Hyphomonas neptunium ATCC 15444 beta/gamma crystallin family protein YP_758774.1 31948 D 228405 CDS YP_758775.1 114798866 4289722 32822..33367 1 NC_008358.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 33367 rimM 4289722 rimM Hyphomonas neptunium ATCC 15444 16S rRNA processing protein RimM YP_758775.1 32822 D 228405 CDS YP_758776.1 114798164 4287653 33458..34978 1 NC_008358.1 beta/gamma crystallin domain-containing protein 34978 4287653 HNE_0042 Hyphomonas neptunium ATCC 15444 beta/gamma crystallin domain-containing protein YP_758776.1 33458 D 228405 CDS YP_758777.1 114797767 4288225 complement(34988..35737) 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 35737 4288225 HNE_0043 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_758777.1 34988 R 228405 CDS YP_758778.1 114799732 4288016 35891..37696 1 NC_008358.1 identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; glutathione-regulated potassium-efflux system protein KefC 37696 kefC 4288016 kefC Hyphomonas neptunium ATCC 15444 glutathione-regulated potassium-efflux system protein KefC YP_758778.1 35891 D 228405 CDS YP_758779.1 114797793 4288057 37728..38483 1 NC_008358.1 identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 38483 trmD 4288057 trmD Hyphomonas neptunium ATCC 15444 tRNA (guanine-N1)-methyltransferase YP_758779.1 37728 D 228405 CDS YP_758780.1 114797917 4287267 38470..39024 1 NC_008358.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 39024 rplS 4287267 rplS Hyphomonas neptunium ATCC 15444 50S ribosomal protein L19 YP_758780.1 38470 D 228405 CDS YP_758781.1 114800168 4290012 39148..40545 1 NC_008358.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 40545 leuC1 4290012 leuC1 Hyphomonas neptunium ATCC 15444 isopropylmalate isomerase large subunit YP_758781.1 39148 D 228405 CDS YP_758782.1 114800485 4289438 40571..41533 1 NC_008358.1 identified by similarity to SP:P36569; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 41533 bioB 4289438 bioB Hyphomonas neptunium ATCC 15444 biotin synthase YP_758782.1 40571 D 228405 CDS YP_758783.1 114799333 4290167 41629..42612 1 NC_008358.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 42612 cysK 4290167 cysK Hyphomonas neptunium ATCC 15444 cysteine synthase A YP_758783.1 41629 D 228405 CDS YP_758784.1 114798524 4290329 42705..43343 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 43343 4290329 HNE_0050 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_758784.1 42705 D 228405 CDS YP_758785.1 114798233 4288614 43340..44188 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 44188 4288614 HNE_0051 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_758785.1 43340 D 228405 CDS YP_758786.1 114799969 4290183 44200..44829 1 NC_008358.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 44829 leuD 4290183 leuD Hyphomonas neptunium ATCC 15444 isopropylmalate isomerase small subunit YP_758786.1 44200 D 228405 CDS YP_758787.1 114798050 4289525 44952..45272 1 NC_008358.1 putative lipoprotein 45272 4289525 HNE_0053 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758787.1 44952 D 228405 CDS YP_758788.1 114798012 4290068 45471..45668 1 NC_008358.1 hypothetical protein 45668 4290068 HNE_0054 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758788.1 45471 D 228405 CDS YP_758789.1 114797061 4287029 45729..46049 1 NC_008358.1 putative lipoprotein 46049 4287029 HNE_0055 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758789.1 45729 D 228405 CDS YP_758790.1 114800090 4289973 46142..47194 1 NC_008358.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 47194 leuB 4289973 leuB Hyphomonas neptunium ATCC 15444 3-isopropylmalate dehydrogenase YP_758790.1 46142 D 228405 CDS YP_758791.1 114799080 4287734 47276..48466 1 NC_008358.1 identified by match to protein family HMM PF04909; amidohydrolase family protein 48466 4287734 HNE_0057 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_758791.1 47276 D 228405 CDS YP_758792.1 114800136 4290469 48521..48889 1 NC_008358.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 48889 4290469 HNE_0058 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_758792.1 48521 D 228405 CDS YP_758793.1 114799115 4289910 48886..49419 1 NC_008358.1 identified by similarity to PIR:AC2826; hypothetical protein 49419 4289910 HNE_0059 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758793.1 48886 D 228405 CDS YP_758794.1 114798586 4289516 complement(49416..49787) 1 NC_008358.1 identified by similarity to GB:AAM31296.1; hypothetical protein 49787 4289516 HNE_0060 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758794.1 49416 R 228405 CDS YP_758795.1 114797625 4288647 49913..50947 1 NC_008358.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 50947 asd 4288647 asd Hyphomonas neptunium ATCC 15444 aspartate-semialdehyde dehydrogenase YP_758795.1 49913 D 228405 CDS YP_758796.1 114798905 4288491 complement(51015..51512) 1 NC_008358.1 identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase domain-containing protein 51512 4288491 HNE_0062 Hyphomonas neptunium ATCC 15444 YbaK/prolyl-tRNA synthetase domain-containing protein YP_758796.1 51015 R 228405 CDS YP_758797.1 114798190 4288008 51575..52309 1 NC_008358.1 hypothetical protein 52309 4288008 HNE_0063 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758797.1 51575 D 228405 CDS YP_758798.1 114797533 4289494 complement(52373..52735) 1 NC_008358.1 identified by similarity to SP:P50935; match to protein family HMM PF01503; phosphoribosyl-ATP diphosphatase 52735 hisE 4289494 hisE Hyphomonas neptunium ATCC 15444 phosphoribosyl-ATP diphosphatase YP_758798.1 52373 R 228405 CDS YP_758799.1 114798522 4290327 52868..53689 1 NC_008358.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 53689 4290327 HNE_0065 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_758799.1 52868 D 228405 CDS YP_758800.1 114797557 4287275 complement(53725..54483) 1 NC_008358.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735; Imidazole glycerol phosphate synthase cyclase subunit 54483 hisF 4287275 hisF Hyphomonas neptunium ATCC 15444 Imidazole glycerol phosphate synthase cyclase subunit YP_758800.1 53725 R 228405 CDS YP_758801.1 114798515 4290319 54635..54826 1 NC_008358.1 hypothetical protein 54826 4290319 HNE_0067 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758801.1 54635 D 228405 CDS YP_758802.1 114799626 4290266 54933..55694 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 55694 4290266 HNE_0068 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_758802.1 54933 D 228405 CDS YP_758803.1 114799723 4289141 55978..56187 1 NC_008358.1 identified by similarity to PIR:AC1282; hypothetical protein 56187 4289141 HNE_0069 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758803.1 55978 D 228405 CDS YP_758804.1 114797166 4287625 complement(56214..56939) 1 NC_008358.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 56939 hisA 4287625 hisA Hyphomonas neptunium ATCC 15444 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_758804.1 56214 R 228405 CDS YP_758805.1 114798251 4288944 complement(56936..57568) 1 NC_008358.1 identified by match to protein family HMM PF00117; match to protein family HMM TIGR01855; imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit 57568 hisH 4288944 hisH Hyphomonas neptunium ATCC 15444 imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit YP_758805.1 56936 R 228405 CDS YP_758806.1 114800187 4290031 57668..58975 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative transporter 58975 4290031 HNE_0072 Hyphomonas neptunium ATCC 15444 putative transporter YP_758806.1 57668 D 228405 CDS YP_758807.1 114799970 4290184 complement(58991..59617) 1 NC_008358.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 59617 hisB 4290184 hisB Hyphomonas neptunium ATCC 15444 imidazoleglycerol-phosphate dehydratase YP_758807.1 58991 R 228405 CDS YP_758808.1 114799436 4289340 59697..61481 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 61481 4289340 HNE_0074 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_758808.1 59697 D 228405 CDS YP_758809.1 114798620 4289879 complement(61463..61981) 1 NC_008358.1 putative acetyltransferase 61981 4289879 HNE_0075 Hyphomonas neptunium ATCC 15444 putative acetyltransferase YP_758809.1 61463 R 228405 CDS YP_758810.1 114800214 4288988 complement(61978..62412) 1 NC_008358.1 identified by similarity to GB:CAD17468.1; hypothetical protein 62412 4288988 HNE_0076 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758810.1 61978 R 228405 CDS YP_758811.1 114797338 4289416 complement(62417..62845) 1 NC_008358.1 hypothetical protein 62845 4289416 HNE_0077 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758811.1 62417 R 228405 CDS YP_758812.1 114798208 4287832 complement(62935..63990) 1 NC_008358.1 identified by similarity to GB:AAB58884.1; match to protein family HMM PF03328; malyl-CoA lyase 63990 mclA 4287832 mclA Hyphomonas neptunium ATCC 15444 malyl-CoA lyase YP_758812.1 62935 R 228405 CDS YP_758813.1 114797180 4287050 64086..64286 1 NC_008358.1 identified by match to protein family HMM PF01679; hypothetical protein 64286 4287050 HNE_0079 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758813.1 64086 D 228405 CDS YP_758814.1 114797932 4287906 complement(64291..65220) 1 NC_008358.1 identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD 65220 xerD 4287906 xerD Hyphomonas neptunium ATCC 15444 tyrosine recombinase XerD YP_758814.1 64291 R 228405 CDS YP_758815.1 114800012 4288804 65507..66067 1 NC_008358.1 identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 66067 aroK 4288804 aroK Hyphomonas neptunium ATCC 15444 shikimate kinase YP_758815.1 65507 D 228405 CDS YP_758816.1 114797725 4289240 66064..67185 1 NC_008358.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 67185 aroB 4289240 aroB Hyphomonas neptunium ATCC 15444 3-dehydroquinate synthase YP_758816.1 66064 D 228405 CDS YP_758817.1 114798726 4289289 67214..68488 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 68488 4289289 HNE_0083 Hyphomonas neptunium ATCC 15444 CBS/transporter associated domain-containing protein YP_758817.1 67214 D 228405 CDS YP_758818.1 114799844 4290152 complement(68495..68776) 1 NC_008358.1 identified by match to protein family HMM PF01722; BolA family protein 68776 4290152 HNE_0084 Hyphomonas neptunium ATCC 15444 BolA family protein YP_758818.1 68495 R 228405 CDS YP_758819.1 114797765 4288223 68808..69431 1 NC_008358.1 identified by match to protein family HMM PF00226; DnaJ domain-containing protein 69431 4288223 HNE_0085 Hyphomonas neptunium ATCC 15444 DnaJ domain-containing protein YP_758819.1 68808 D 228405 CDS YP_758820.1 114798718 4290446 69846..70310 1 NC_008358.1 spore coat family protein 70310 4290446 HNE_0086 Hyphomonas neptunium ATCC 15444 spore coat family protein YP_758820.1 69846 D 228405 CDS YP_758821.1 114799312 4287321 70322..71002 1 NC_008358.1 identified by similarity to GB:CAD16401.1; hypothetical protein 71002 4287321 HNE_0087 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758821.1 70322 D 228405 CDS YP_758822.1 114800318 4289252 71056..73308 1 NC_008358.1 identified by match to protein family HMM PF00577; fimbrial usher protein 73308 4289252 HNE_0088 Hyphomonas neptunium ATCC 15444 fimbrial usher protein YP_758822.1 71056 D 228405 CDS YP_758823.1 114797879 4288669 73309..73767 1 NC_008358.1 putative lipoprotein 73767 4288669 HNE_0089 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758823.1 73309 D 228405 CDS YP_758824.1 114798702 4289772 73871..74860 1 NC_008358.1 identified by similarity to SP:P34943; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; putative NADH-quinone oxidoreductase 74860 4289772 HNE_0090 Hyphomonas neptunium ATCC 15444 putative NADH-quinone oxidoreductase YP_758824.1 73871 D 228405 CDS YP_758825.1 114799349 4288119 complement(74864..75721) 1 NC_008358.1 identified by match to protein family HMM PF02673; putative undecaprenol kinase 75721 4288119 HNE_0091 Hyphomonas neptunium ATCC 15444 putative undecaprenol kinase YP_758825.1 74864 R 228405 CDS YP_758826.1 114800319 4289253 75961..77406 1 NC_008358.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 77406 gltD 4289253 gltD Hyphomonas neptunium ATCC 15444 putative oxidoreductase YP_758826.1 75961 D 228405 CDS YP_758827.1 114798288 4287229 77412..81953 1 NC_008358.1 identified by similarity to SP:Q05755; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase large subunit 81953 gltB 4287229 gltB Hyphomonas neptunium ATCC 15444 glutamate synthase large subunit YP_758827.1 77412 D 228405 CDS YP_758828.1 114798674 4289855 complement(82002..82889) 1 NC_008358.1 identified by similarity to GB:AAM41903.1; putative lipoprotein 82889 4289855 HNE_0094 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758828.1 82002 R 228405 CDS YP_758829.1 114799939 4290094 83174..84337 1 NC_008358.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01409; classes I and II aminotransferase 84337 4290094 HNE_0095 Hyphomonas neptunium ATCC 15444 classes I and II aminotransferase YP_758829.1 83174 D 228405 CDS YP_758830.1 114797697 4289347 complement(84385..85932) 1 NC_008358.1 identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein 85932 4289347 HNE_0096 Hyphomonas neptunium ATCC 15444 carboxyl transferase domain-containing protein YP_758830.1 84385 R 228405 CDS YP_758831.1 114797960 4289572 86041..86346 1 NC_008358.1 identified by match to protein family HMM PF02036; SCP-2 sterol transfer family protein 86346 4289572 HNE_0097 Hyphomonas neptunium ATCC 15444 SCP-2 sterol transfer family protein YP_758831.1 86041 D 228405 CDS YP_758832.1 114799139 4287793 86433..87386 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 87386 4287793 HNE_0098 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_758832.1 86433 D 228405 CDS YP_758833.1 114797267 4290531 87421..88878 1 NC_008358.1 identified by similarity to SP:P19409; match to protein family HMM PF00501; bile acid-coenzyme A ligase 88878 baiB 4290531 baiB Hyphomonas neptunium ATCC 15444 bile acid-coenzyme A ligase YP_758833.1 87421 D 228405 CDS YP_758834.1 114797977 4288340 88934..89938 1 NC_008358.1 identified by match to protein family HMM PF00107; class III alcohol dehydrogenase 89938 4288340 HNE_0100 Hyphomonas neptunium ATCC 15444 class III alcohol dehydrogenase YP_758834.1 88934 D 228405 CDS YP_758835.1 114798776 4289841 complement(89975..91498) 1 NC_008358.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 91498 4289841 HNE_0101 Hyphomonas neptunium ATCC 15444 amino acid carrier protein YP_758835.1 89975 R 228405 CDS YP_758836.1 114799575 4288560 complement(91544..91666) 1 NC_008358.1 hypothetical protein 91666 4288560 HNE_0102 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758836.1 91544 R 228405 CDS YP_758837.1 114799640 4290280 91688..93037 1 NC_008358.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 93037 4290280 HNE_0103 Hyphomonas neptunium ATCC 15444 (dimethylallyl)adenosine tRNA methylthiotransferase YP_758837.1 91688 D 228405 CDS YP_758838.1 114800486 4289439 93076..94020 1 NC_008358.1 identified by match to protein family HMM PF02562; PhoH family protein 94020 4289439 HNE_0104 Hyphomonas neptunium ATCC 15444 PhoH family protein YP_758838.1 93076 D 228405 CDS YP_758839.1 114798379 4288371 94031..94483 1 NC_008358.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 94483 4288371 HNE_0105 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758839.1 94031 D 228405 CDS YP_758840.1 114798310 4289474 94489..95349 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 95349 4289474 HNE_0106 Hyphomonas neptunium ATCC 15444 CBS/transporter associated domain-containing protein YP_758840.1 94489 D 228405 CDS YP_758841.1 114800455 4288197 95356..96999 1 NC_008358.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 96999 lnt 4288197 lnt Hyphomonas neptunium ATCC 15444 apolipoprotein N-acyltransferase YP_758841.1 95356 D 228405 CDS YP_758842.1 114799525 4288918 97041..97478 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 97478 4288918 HNE_0108 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_758842.1 97041 D 228405 CDS YP_758843.1 114798099 4288247 97510..98169 1 NC_008358.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 98169 trmB 4288247 trmB Hyphomonas neptunium ATCC 15444 tRNA (guanine-N(7)-)-methyltransferase YP_758843.1 97510 D 228405 CDS YP_758844.1 114797127 4287155 98355..98564 1 NC_008358.1 identified by match to protein family HMM PF00313; cold shock DNA-binding protein 98564 4287155 HNE_0110 Hyphomonas neptunium ATCC 15444 cold shock DNA-binding protein YP_758844.1 98355 D 228405 CDS YP_758845.1 114800120 4290453 98773..99372 1 NC_008358.1 identified by similarity to SP:Q92SW6; match to protein family HMM PF02576; hypothetical protein 99372 4290453 HNE_0111 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758845.1 98773 D 228405 CDS YP_758846.1 114799070 4288969 99369..101147 1 NC_008358.1 identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; transcription termination factor NusA 101147 nusA 4288969 nusA Hyphomonas neptunium ATCC 15444 transcription termination factor NusA YP_758846.1 99369 D 228405 CDS YP_758847.1 114798650 4290396 101122..101808 1 NC_008358.1 identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296; hypothetical protein 101808 4290396 HNE_0113 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758847.1 101122 D 228405 CDS YP_758848.1 114797688 4287894 101864..104425 1 NC_008358.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 104425 infB 4287894 infB Hyphomonas neptunium ATCC 15444 translation initiation factor IF-2 YP_758848.1 101864 D 228405 CDS YP_758849.1 114799473 4290054 104435..104842 1 NC_008358.1 identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A 104842 rbfA 4290054 rbfA Hyphomonas neptunium ATCC 15444 ribosome-binding factor A YP_758849.1 104435 D 228405 CDS YP_758850.1 114800142 4290475 105005..105562 1 NC_008358.1 hypothetical protein 105562 4290475 HNE_0116 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758850.1 105005 D 228405 CDS YP_758851.1 114799976 4290191 105695..106636 1 NC_008358.1 identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 106636 truB 4290191 truB Hyphomonas neptunium ATCC 15444 tRNA pseudouridine synthase B YP_758851.1 105695 D 228405 CDS YP_758852.1 114797236 4287342 complement(106637..106873) 1 NC_008358.1 hypothetical protein 106873 4287342 HNE_0118 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758852.1 106637 R 228405 CDS YP_758853.1 114797682 4287888 complement(107521..108228) 1 NC_008358.1 putative lipoprotein 108228 4287888 HNE_0119 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758853.1 107521 R 228405 CDS YP_758854.1 114800218 4288992 108400..108900 1 NC_008358.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 108900 msrB1 4288992 msrB1 Hyphomonas neptunium ATCC 15444 methionine-R-sulfoxide reductase YP_758854.1 108400 D 228405 CDS YP_758855.1 114798277 4287218 complement(108966..109358) 1 NC_008358.1 identified by similarity to GB:AAQ62364.1; hypothetical protein 109358 4287218 HNE_0121 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758855.1 108966 R 228405 CDS YP_758856.1 114797689 4287895 complement(109355..109690) 1 NC_008358.1 identified by similarity to GB:AAQ62365.1; hypothetical protein 109690 4287895 HNE_0122 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758856.1 109355 R 228405 CDS YP_758857.1 114797302 4289226 complement(109703..110338) 1 NC_008358.1 identified by similarity to GB:AAG10465.1; hypothetical protein 110338 4289226 HNE_0123 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758857.1 109703 R 228405 CDS YP_758858.1 114798871 4289727 complement(110388..110759) 1 NC_008358.1 hypothetical protein 110759 4289727 HNE_0124 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758858.1 110388 R 228405 CDS YP_758859.1 114797825 4288478 complement(110804..111586) 1 NC_008358.1 identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963; 3-hydroxybutyrate dehydrogenase 111586 bdhA 4288478 bdhA Hyphomonas neptunium ATCC 15444 3-hydroxybutyrate dehydrogenase YP_758859.1 110804 R 228405 CDS YP_758860.1 114800450 4288192 111682..112116 1 NC_008358.1 identified by match to protein family HMM PF03994; hypothetical protein 112116 4288192 HNE_0126 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758860.1 111682 D 228405 CDS YP_758861.1 114799432 4289336 112243..112947 1 NC_008358.1 hypothetical protein 112947 4289336 HNE_0127 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758861.1 112243 D 228405 CDS YP_758862.1 114799810 4290118 112944..113813 1 NC_008358.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR02127; orotidine 5'-phosphate decarboxylase 113813 pyrF 4290118 pyrF Hyphomonas neptunium ATCC 15444 orotidine 5'-phosphate decarboxylase YP_758862.1 112944 D 228405 CDS YP_758863.1 114797244 4287350 113966..116119 1 NC_008358.1 identified by similarity to SP:P28036; match to protein family HMM PF00034; match to protein family HMM PF01011; alcohol dehydrogenase (acceptor) 116119 adhA 4287350 adhA Hyphomonas neptunium ATCC 15444 alcohol dehydrogenase (acceptor) YP_758863.1 113966 D 228405 CDS YP_758864.1 114798229 4288610 116258..116797 1 NC_008358.1 hypothetical protein 116797 4288610 HNE_0130 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758864.1 116258 D 228405 CDS YP_758865.1 114797508 4287637 116868..117692 1 NC_008358.1 hypothetical protein 117692 4287637 HNE_0131 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758865.1 116868 D 228405 CDS YP_758866.1 114800131 4290464 complement(117676..118368) 1 NC_008358.1 identified by match to protein family HMM PF02798; glutathione S-transferase 118368 4290464 HNE_0132 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_758866.1 117676 R 228405 CDS YP_758867.1 114797485 4289700 complement(118365..118661) 1 NC_008358.1 identified by match to protein family HMM PF03795; hypothetical protein 118661 4289700 HNE_0133 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758867.1 118365 R 228405 CDS YP_758868.1 114798071 4287851 118811..119518 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 119518 4287851 HNE_0134 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_758868.1 118811 D 228405 CDS YP_758869.1 114799071 4287725 119583..119732 1 NC_008358.1 hypothetical protein 119732 4287725 HNE_0135 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758869.1 119583 D 228405 CDS YP_758870.1 114797789 4289633 complement(119883..120980) 1 NC_008358.1 identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase 120980 gcp 4289633 gcp Hyphomonas neptunium ATCC 15444 O-sialoglycoprotein endopeptidase YP_758870.1 119883 R 228405 CDS YP_758871.1 114798778 4289843 complement(121016..121756) 1 NC_008358.1 identified by match to protein family HMM PF04264; hypothetical protein 121756 4289843 HNE_0137 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758871.1 121016 R 228405 CDS YP_758872.1 114799309 4287318 122241..122672 1 NC_008358.1 identified by similarity to PIR:AI2479; hypothetical protein 122672 4287318 HNE_0138 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758872.1 122241 D 228405 CDS YP_758873.1 114800355 4288718 complement(122692..124506) 1 NC_008358.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 124506 lepA 4288718 lepA Hyphomonas neptunium ATCC 15444 GTP-binding protein LepA YP_758873.1 122692 R 228405 CDS YP_758874.1 114797303 4289227 124623..125474 1 NC_008358.1 hypothetical protein 125474 4289227 HNE_0140 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758874.1 124623 D 228405 CDS YP_758875.1 114798287 4287228 125443..126273 1 NC_008358.1 hypothetical protein 126273 4287228 HNE_0141 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758875.1 125443 D 228405 CDS YP_758876.1 114800011 4288803 126362..126937 1 NC_008358.1 putative lipoprotein 126937 4288803 HNE_0142 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758876.1 126362 D 228405 CDS YP_758877.1 114798450 4290312 126950..128047 1 NC_008358.1 identified by match to protein family HMM PF00355; Rieske 2Fe-2S family protein 128047 4290312 HNE_0143 Hyphomonas neptunium ATCC 15444 Rieske 2Fe-2S family protein YP_758877.1 126950 D 228405 CDS YP_758878.1 114797636 4289030 128185..128769 1 NC_008358.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 128769 4289030 HNE_0144 Hyphomonas neptunium ATCC 15444 fasciclin domain-containing protein YP_758878.1 128185 D 228405 CDS YP_758879.1 114799962 4290117 128909..129412 1 NC_008358.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 129412 ruvC 4290117 ruvC Hyphomonas neptunium ATCC 15444 Holliday junction resolvase YP_758879.1 128909 D 228405 CDS YP_758880.1 114798884 4287575 129409..130032 1 NC_008358.1 identified by similarity to SP:Q51425; match to protein family HMM PF01330; match to protein family HMM PF07499; Holliday junction DNA helicase RuvA 130032 ruvA 4287575 ruvA Hyphomonas neptunium ATCC 15444 Holliday junction DNA helicase RuvA YP_758880.1 129409 D 228405 CDS YP_758881.1 114800414 4290358 130029..131063 1 NC_008358.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 131063 ruvB 4290358 ruvB Hyphomonas neptunium ATCC 15444 Holliday junction DNA helicase RuvB YP_758881.1 130029 D 228405 CDS YP_758882.1 114799614 4289110 complement(131064..131462) 1 NC_008358.1 identified by similarity to GB:AAK23005.1; hypothetical protein 131462 4289110 HNE_0148 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758882.1 131064 R 228405 CDS YP_758883.1 114797615 4288637 131539..132684 1 NC_008358.1 hypothetical protein 132684 4288637 HNE_0149 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758883.1 131539 D 228405 CDS YP_758884.1 114797377 4287308 132681..133136 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein 133136 4287308 HNE_0150 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_758884.1 132681 D 228405 CDS YP_758885.1 114799599 4289095 133454..134164 1 NC_008358.1 identified by similarity to SP:P05828; match to protein family HMM PF01618; protein TolQ 134164 tolQ 4289095 tolQ Hyphomonas neptunium ATCC 15444 protein TolQ YP_758885.1 133454 D 228405 CDS YP_758886.1 114799773 4289790 134177..134626 1 NC_008358.1 identified by match to protein family HMM PF02472; ExbD/TolR family transport energizing protein 134626 4289790 HNE_0152 Hyphomonas neptunium ATCC 15444 ExbD/TolR family transport energizing protein YP_758886.1 134177 D 228405 CDS YP_758887.1 114798960 4287417 134652..135575 1 NC_008358.1 identified by similarity to PIR:H98270; hypothetical protein 135575 4287417 HNE_0153 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758887.1 134652 D 228405 CDS YP_758888.1 114798605 4290508 135616..136971 1 NC_008358.1 identified by similarity to SP:Q93TG4; match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800; tolB protein 136971 tolB 4290508 tolB Hyphomonas neptunium ATCC 15444 tolB protein YP_758888.1 135616 D 228405 CDS YP_758889.1 114797840 4288784 137204..137746 1 NC_008358.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; OmpA family protein 137746 4288784 HNE_0155 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_758889.1 137204 D 228405 CDS YP_758890.1 114800143 4290476 137861..138817 1 NC_008358.1 identified by similarity to GB:AAK25190.1; match to protein family HMM TIGR02795; hypothetical protein 138817 4290476 HNE_0156 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758890.1 137861 D 228405 CDS YP_758891.1 114799417 4289554 138805..139908 1 NC_008358.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 139908 tilS 4289554 tilS Hyphomonas neptunium ATCC 15444 tRNA(Ile)-lysidine synthetase YP_758891.1 138805 D 228405 CDS YP_758892.1 114797326 4289404 139957..141876 1 NC_008358.1 identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 141876 ftsH 4289404 ftsH Hyphomonas neptunium ATCC 15444 ATP-dependent metalloprotease FtsH YP_758892.1 139957 D 228405 CDS YP_758893.1 114800066 4289389 141950..142606 1 NC_008358.1 identified by similarity to GB:AAM42303.1; hypothetical protein 142606 4289389 HNE_0159 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758893.1 141950 D 228405 CDS YP_758894.1 114797110 4287138 142647..142976 1 NC_008358.1 hypothetical protein 142976 4287138 HNE_0160 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758894.1 142647 D 228405 CDS YP_758895.1 114799876 4287459 143079..143837 1 NC_008358.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 143837 4287459 HNE_0161 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758895.1 143079 D 228405 CDS YP_758896.1 114798254 4288947 complement(143838..145013) 1 NC_008358.1 identified by match to protein family HMM PF02515; L-carnitine dehydratase 145013 4288947 HNE_0162 Hyphomonas neptunium ATCC 15444 L-carnitine dehydratase YP_758896.1 143838 R 228405 CDS YP_758897.1 114797399 4287095 complement(145081..146508) 1 NC_008358.1 identified by similarity to SP:P73436; match to protein family HMM PF02696; hypothetical protein 146508 4287095 HNE_0163 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758897.1 145081 R 228405 CDS YP_758898.1 114799790 4289807 146696..149584 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 149584 4289807 HNE_0164 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_758898.1 146696 D 228405 CDS YP_758899.1 114798938 4289637 complement(149724..152084) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; tonB dependent receptor 152084 4289637 HNE_0165 Hyphomonas neptunium ATCC 15444 tonB dependent receptor YP_758899.1 149724 R 228405 CDS YP_758900.1 114798639 4289898 complement(152262..153218) 1 NC_008358.1 identified by match to protein family HMM PF07859; GDXG family lipase 153218 4289898 HNE_0166 Hyphomonas neptunium ATCC 15444 GDXG family lipase YP_758900.1 152262 R 228405 CDS YP_758901.1 114797895 4288083 complement(153300..155153) 1 NC_008358.1 identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501; acyl-CoA synthetase 155153 fcs1 4288083 fcs1 Hyphomonas neptunium ATCC 15444 acyl-CoA synthetase YP_758901.1 153300 R 228405 CDS YP_758902.1 114800209 4288983 complement(155246..156595) 1 NC_008358.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase 156595 glmM 4288983 glmM Hyphomonas neptunium ATCC 15444 phosphoglucosamine mutase YP_758902.1 155246 R 228405 CDS YP_758903.1 114799459 4290040 complement(156619..157407) 1 NC_008358.1 identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 157407 cysQ 4290040 cysQ Hyphomonas neptunium ATCC 15444 3'(2'),5'-bisphosphate nucleotidase YP_758903.1 156619 R 228405 CDS YP_758904.1 114797197 4287068 complement(157423..158319) 1 NC_008358.1 identified by similarity to SP:O08437; similarity to SP:P39311; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 158319 4287068 HNE_0170 Hyphomonas neptunium ATCC 15444 FKBP-type peptidyl-prolyl cis-trans isomerase YP_758904.1 157423 R 228405 CDS YP_758905.1 114797934 4287908 complement(158401..159627) 1 NC_008358.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 159627 ilvA 4287908 ilvA Hyphomonas neptunium ATCC 15444 threonine dehydratase YP_758905.1 158401 R 228405 CDS YP_758906.1 114797610 4288322 complement(159673..161544) 1 NC_008358.1 identified by similarity to SP:P75796; match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein 161544 4288322 HNE_0172 Hyphomonas neptunium ATCC 15444 peptide ABC transporter ATP-binding protein YP_758906.1 159673 R 228405 CDS YP_758907.1 114800389 4288752 complement(161673..162353) 1 NC_008358.1 identified by similarity to SP:P17266; match to protein family HMM PF03922; putative outer membrane protein OmpW 162353 4288752 HNE_0173 Hyphomonas neptunium ATCC 15444 putative outer membrane protein OmpW YP_758907.1 161673 R 228405 CDS YP_758908.1 114798252 4288945 162628..163761 1 NC_008358.1 identified by similarity to GB:AAC41425.1; match to protein family HMM PF00465; 4-hydroxybutyrate dehydrogenase 163761 gbd 4288945 gbd Hyphomonas neptunium ATCC 15444 4-hydroxybutyrate dehydrogenase YP_758908.1 162628 D 228405 CDS YP_758909.1 114797489 4289704 163771..164445 1 NC_008358.1 identified by similarity to GB:AAV94429.1; hypothetical protein 164445 4289704 HNE_0175 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758909.1 163771 D 228405 CDS YP_758910.1 114799802 4289819 complement(164452..165510) 1 NC_008358.1 identified by similarity to SP:P42094; match to protein family HMM PF02333; 3-phytase 165510 4289819 HNE_0176 Hyphomonas neptunium ATCC 15444 3-phytase YP_758910.1 164452 R 228405 CDS YP_758911.1 114798930 4287874 complement(165592..166470) 1 NC_008358.1 identified by match to protein family HMM PF05235; CHAD domain-containing protein 166470 4287874 HNE_0177 Hyphomonas neptunium ATCC 15444 CHAD domain-containing protein YP_758911.1 165592 R 228405 CDS YP_758912.1 114798757 4287992 166626..167048 1 NC_008358.1 hypothetical protein 167048 4287992 HNE_0178 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758912.1 166626 D 228405 CDS YP_758913.1 114797635 4289029 complement(167045..167428) 1 NC_008358.1 hypothetical protein 167428 4289029 HNE_0179 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758913.1 167045 R 228405 CDS YP_758914.1 114800245 4287480 167642..168940 1 NC_008358.1 identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849; polyhydroxyalkanoate depolymerase 168940 phaZ 4287480 phaZ Hyphomonas neptunium ATCC 15444 polyhydroxyalkanoate depolymerase YP_758914.1 167642 D 228405 CDS YP_758915.1 114798354 4290411 complement(168947..170020) 1 NC_008358.1 identified by similarity to SP:P37887; match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase family protein 170020 4290411 HNE_0181 Hyphomonas neptunium ATCC 15444 cysteine synthase/cystathionine beta-synthase family protein YP_758915.1 168947 R 228405 CDS YP_758916.1 114798689 4289759 170081..170575 1 NC_008358.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 170575 4289759 HNE_0182 Hyphomonas neptunium ATCC 15444 AsnC family transcriptional regulator YP_758916.1 170081 D 228405 CDS YP_758917.1 114797420 4287686 complement(170572..171423) 1 NC_008358.1 hypothetical protein 171423 4287686 HNE_0183 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758917.1 170572 R 228405 CDS YP_758918.1 114800197 4288971 complement(171493..172302) 1 NC_008358.1 identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc/iron ABC transporter permease 172302 4288971 HNE_0184 Hyphomonas neptunium ATCC 15444 zinc/iron ABC transporter permease YP_758918.1 171493 R 228405 CDS YP_758919.1 114798529 4288094 172494..173138 1 NC_008358.1 putative lipoprotein 173138 4288094 HNE_0185 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758919.1 172494 D 228405 CDS YP_758920.1 114797981 4288344 173147..173842 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 173842 4288344 HNE_0186 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_758920.1 173147 D 228405 CDS YP_758921.1 114800526 4288871 173839..175107 1 NC_008358.1 identified by match to protein family HMM PF02687; ABC transporter permease 175107 4288871 HNE_0187 Hyphomonas neptunium ATCC 15444 ABC transporter permease YP_758921.1 173839 D 228405 CDS YP_758922.1 114797268 4290532 175156..175881 1 NC_008358.1 putative lipoprotein 175881 4290532 HNE_0188 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758922.1 175156 D 228405 CDS YP_758923.1 114798003 4290059 175881..176516 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 176516 4290059 HNE_0189 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_758923.1 175881 D 228405 CDS YP_758924.1 114798146 4290379 complement(176661..177074) 1 NC_008358.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 177074 mscL 4290379 mscL Hyphomonas neptunium ATCC 15444 large-conductance mechanosensitive channel YP_758924.1 176661 R 228405 CDS YP_758925.1 114798899 4288485 complement(177183..177482) 1 NC_008358.1 identified by similarity to SP:Q06607; match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta 177482 ihfB 4288485 ihfB Hyphomonas neptunium ATCC 15444 integration host factor subunit beta YP_758925.1 177183 R 228405 CDS YP_758926.1 114797862 4287133 complement(177598..179577) 1 NC_008358.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 179577 rpsA 4287133 rpsA Hyphomonas neptunium ATCC 15444 30S ribosomal protein S1 YP_758926.1 177598 R 228405 CDS YP_758927.1 114798672 4289853 complement(179719..180357) 1 NC_008358.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 180357 cmk 4289853 cmk Hyphomonas neptunium ATCC 15444 cytidylate kinase YP_758927.1 179719 R 228405 CDS YP_758928.1 114799497 4289188 complement(180418..181509) 1 NC_008358.1 identified by match to protein family HMM PF00724; NADH:flavin oxidoreductase/NADH oxidase family protein 181509 4289188 HNE_0194 Hyphomonas neptunium ATCC 15444 NADH:flavin oxidoreductase/NADH oxidase family protein YP_758928.1 180418 R 228405 CDS YP_758929.1 114800272 4287507 complement(181563..182882) 1 NC_008358.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 182882 aroA 4287507 aroA Hyphomonas neptunium ATCC 15444 3-phosphoshikimate 1-carboxyvinyltransferase YP_758929.1 181563 R 228405 CDS YP_758930.1 114798197 4288015 183012..183530 1 NC_008358.1 identified by similarity to GB:AAK25552.1; match to protein family HMM TIGR02300; hypothetical protein 183530 4288015 HNE_0196 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758930.1 183012 D 228405 CDS YP_758931.1 114800391 4290335 184001..184240 1 NC_008358.1 identified by similarity to GB:AAK25555.1; hypothetical protein 184240 4290335 HNE_0198 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758931.1 184001 D 228405 CDS YP_758932.1 114799624 4290264 184343..185590 1 NC_008358.1 putative lipoprotein 185590 4290264 HNE_0199 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758932.1 184343 D 228405 CDS YP_758933.1 114799280 4288595 185603..186637 1 NC_008358.1 identified by similarity to GB:AAN55945.1; putative lipoprotein 186637 4288595 HNE_0200 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758933.1 185603 D 228405 CDS YP_758934.1 114798243 4288936 186634..187098 1 NC_008358.1 identified by match to protein family HMM PF02639; YaiI/YqxD family protein 187098 4288936 HNE_0201 Hyphomonas neptunium ATCC 15444 YaiI/YqxD family protein YP_758934.1 186634 D 228405 CDS YP_758935.1 114797270 4290534 187145..187759 1 NC_008358.1 identified by match to protein family HMM PF01612; putative exonuclease 187759 4290534 HNE_0202 Hyphomonas neptunium ATCC 15444 putative exonuclease YP_758935.1 187145 D 228405 CDS YP_758936.1 114799884 4287467 187861..188538 1 NC_008358.1 identified by similarity to GB:AAK25564.1; hypothetical protein 188538 4287467 HNE_0203 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758936.1 187861 D 228405 CDS YP_758937.1 114798835 4287565 188525..189061 1 NC_008358.1 identified by match to protein family HMM PF03968; OstA family protein 189061 4287565 HNE_0204 Hyphomonas neptunium ATCC 15444 OstA family protein YP_758937.1 188525 D 228405 CDS YP_758938.1 114797827 4288480 189155..189889 1 NC_008358.1 identified by similarity to GB:AAK25562.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 189889 4288480 HNE_0205 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_758938.1 189155 D 228405 CDS YP_758939.1 114800351 4289285 189908..191407 1 NC_008358.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 191407 rpoN 4289285 rpoN Hyphomonas neptunium ATCC 15444 RNA polymerase factor sigma-54 YP_758939.1 189908 D 228405 CDS YP_758940.1 114799341 4290175 complement(192246..193088) 1 NC_008358.1 identified by similarity to SP:P36945; match to protein family HMM PF00294; ribokinase 193088 rbsK 4290175 rbsK Hyphomonas neptunium ATCC 15444 ribokinase YP_758940.1 192246 R 228405 CDS YP_758941.1 114798081 4288229 complement(193085..194017) 1 NC_008358.1 identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein 194017 4288229 HNE_0208 Hyphomonas neptunium ATCC 15444 inosine-uridine preferring nucleoside hydrolase family protein YP_758941.1 193085 R 228405 CDS YP_758942.1 114797114 4287142 complement(194014..194538) 1 NC_008358.1 identified by similarity to GB:CAE78626.1; hypothetical protein 194538 4287142 HNE_0209 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758942.1 194014 R 228405 CDS YP_758943.1 114798703 4290431 194479..194580 1 NC_008358.1 hypothetical protein 194580 4290431 HNE_0210 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758943.1 194479 D 228405 CDS YP_758944.1 114797729 4289244 complement(194675..197803) 1 NC_008358.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 197803 4289244 HNE_0211 Hyphomonas neptunium ATCC 15444 AcrB/AcrD/AcrF family protein YP_758944.1 194675 R 228405 CDS YP_758945.1 114797281 4290545 complement(197808..198953) 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 198953 4290545 HNE_0212 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_758945.1 197808 R 228405 CDS YP_758946.1 114799824 4290132 complement(198963..200402) 1 NC_008358.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 200402 4290132 HNE_0213 Hyphomonas neptunium ATCC 15444 RND efflux system outer membrane lipoprotein YP_758946.1 198963 R 228405 CDS YP_758947.1 114799296 4289021 200728..202539 1 NC_008358.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 202539 4289021 HNE_0214 Hyphomonas neptunium ATCC 15444 potassium/proton antiporter YP_758947.1 200728 D 228405 CDS YP_758948.1 114800314 4289248 202748..205615 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782; TonB-dependent receptor 205615 4289248 HNE_0215 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_758948.1 202748 D 228405 CDS YP_758949.1 114800334 4289268 205566..206969 1 NC_008358.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 206969 4289268 HNE_0216 Hyphomonas neptunium ATCC 15444 Ser/Thr protein phosphatase family protein YP_758949.1 205566 D 228405 CDS YP_758950.1 114799303 4289028 complement(207039..207809) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein 207809 4289028 HNE_0217 Hyphomonas neptunium ATCC 15444 NAD-dependent epimerase/dehydratase family protein YP_758950.1 207039 R 228405 CDS YP_758951.1 114797785 4289629 208103..208618 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 208618 4289629 HNE_0218 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_758951.1 208103 D 228405 CDS YP_758952.1 114800332 4289266 208653..209687 1 NC_008358.1 identified by match to protein family HMM PF04773; sigma factor regulatory protein FecR/PupR family 209687 4289266 HNE_0219 Hyphomonas neptunium ATCC 15444 sigma factor regulatory protein FecR/PupR family YP_758952.1 208653 D 228405 CDS YP_758953.1 114799872 4287455 209986..212790 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 212790 4287455 HNE_0220 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_758953.1 209986 D 228405 CDS YP_758954.1 114797105 4287972 212878..215022 1 NC_008358.1 identified by match to protein family HMM PF01804; penicillin amidase 215022 4287972 HNE_0221 Hyphomonas neptunium ATCC 15444 penicillin amidase YP_758954.1 212878 D 228405 CDS YP_758955.1 114798541 4288106 215044..216600 1 NC_008358.1 identified by match to protein family HMM PF01839; FG-GAP repeat-containing protein 216600 4288106 HNE_0222 Hyphomonas neptunium ATCC 15444 FG-GAP repeat-containing protein YP_758955.1 215044 D 228405 CDS YP_758956.1 114799501 4288894 complement(216654..217025) 1 NC_008358.1 putative lipoprotein 217025 4288894 HNE_0223 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_758956.1 216654 R 228405 CDS YP_758957.1 114797391 4287087 217294..218400 1 NC_008358.1 identified by match to protein family HMM PF07446; GumN family protein 218400 4287087 HNE_0225 Hyphomonas neptunium ATCC 15444 GumN family protein YP_758957.1 217294 D 228405 CDS YP_758958.1 114797506 4287635 complement(218407..219219) 1 NC_008358.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 219219 4287635 HNE_0226 Hyphomonas neptunium ATCC 15444 inositol monophosphatase family protein YP_758958.1 218407 R 228405 CDS YP_758959.1 114798925 4287869 complement(219252..219650) 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 219650 4287869 HNE_0227 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_758959.1 219252 R 228405 CDS YP_758960.1 114799855 4287437 complement(219923..220747) 1 NC_008358.1 identified by match to protein family HMM PF05013; putative N-formylglutamate amidohydrolase 220747 4287437 HNE_0228 Hyphomonas neptunium ATCC 15444 putative N-formylglutamate amidohydrolase YP_758960.1 219923 R 228405 CDS YP_758961.1 114797706 4289356 220976..221335 1 NC_008358.1 identified by match to protein family HMM PF00072; response regulator 221335 4289356 HNE_0229 Hyphomonas neptunium ATCC 15444 response regulator YP_758961.1 220976 D 228405 CDS YP_758962.1 114797940 4287914 complement(221337..222569) 1 NC_008358.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing 222569 4287914 HNE_0230 Hyphomonas neptunium ATCC 15444 amine oxidase, flavin-containing YP_758962.1 221337 R 228405 CDS YP_758963.1 114798072 4287852 222656..223147 1 NC_008358.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 223147 4287852 HNE_0231 Hyphomonas neptunium ATCC 15444 rrf2 family protein YP_758963.1 222656 D 228405 CDS YP_758964.1 114797106 4287973 223445..224167 1 NC_008358.1 hypothetical protein 224167 4287973 HNE_0233 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758964.1 223445 D 228405 CDS YP_758965.1 114800539 4288884 224341..225540 1 NC_008358.1 hypothetical protein 225540 4288884 HNE_0234 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758965.1 224341 D 228405 CDS YP_758966.1 114799545 4288530 225537..226487 1 NC_008358.1 hypothetical protein 226487 4288530 HNE_0235 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758966.1 225537 D 228405 CDS YP_758967.1 114797779 4289623 226492..228057 1 NC_008358.1 hypothetical protein 228057 4289623 HNE_0236 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758967.1 226492 D 228405 CDS YP_758968.1 114800356 4288719 complement(228064..229284) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 229284 4288719 HNE_0237 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_758968.1 228064 R 228405 CDS YP_758969.1 114800069 4289392 complement(229281..230204) 1 NC_008358.1 identified by similarity to GB:AAK24540.1; hypothetical protein 230204 4289392 HNE_0238 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758969.1 229281 R 228405 CDS YP_758970.1 114799076 4287730 complement(230349..230972) 1 NC_008358.1 identified by similarity to GB:AAS95392.1; hypothetical protein 230972 4287730 HNE_0239 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758970.1 230349 R 228405 CDS YP_758971.1 114798928 4287872 complement(230991..231479) 1 NC_008358.1 hypothetical protein 231479 4287872 HNE_0240 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758971.1 230991 R 228405 CDS YP_758972.1 114797942 4287916 complement(231484..231999) 1 NC_008358.1 flagellar basal body-associated protein FliL 231999 fliL 4287916 fliL Hyphomonas neptunium ATCC 15444 flagellar basal body-associated protein FliL YP_758972.1 231484 R 228405 CDS YP_758973.1 114800445 4288187 232128..233714 1 NC_008358.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 233714 fliF 4288187 fliF Hyphomonas neptunium ATCC 15444 flagellar MS-ring protein YP_758973.1 232128 D 228405 CDS YP_758974.1 114797896 4288084 233707..234318 1 NC_008358.1 hypothetical protein 234318 4288084 HNE_0243 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758974.1 233707 D 228405 CDS YP_758975.1 114798836 4287566 234339..234638 1 NC_008358.1 identified by match to protein family HMM PF01052; putative flagellar motor switch protein FliN 234638 4287566 HNE_0244 Hyphomonas neptunium ATCC 15444 putative flagellar motor switch protein FliN YP_758975.1 234339 D 228405 CDS YP_758976.1 114798811 4289161 234635..235393 1 NC_008358.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 235393 fliP 4289161 fliP Hyphomonas neptunium ATCC 15444 flagellar biosynthesis protein FliP YP_758976.1 234635 D 228405 CDS YP_758977.1 114800000 4290215 235390..236484 1 NC_008358.1 identified by match to protein family HMM PF01706; putative flagellar motor switch protein 236484 4290215 HNE_0246 Hyphomonas neptunium ATCC 15444 putative flagellar motor switch protein YP_758977.1 235390 D 228405 CDS YP_758978.1 114797455 4288575 complement(236556..237665) 1 NC_008358.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 237665 flgI 4288575 flgI Hyphomonas neptunium ATCC 15444 flagellar basal body P-ring protein YP_758978.1 236556 R 228405 CDS YP_758979.1 114798459 4287694 complement(237670..238647) 1 NC_008358.1 putative flagellar hook-associated protein FlgL 238647 4287694 HNE_0248 Hyphomonas neptunium ATCC 15444 putative flagellar hook-associated protein FlgL YP_758979.1 237670 R 228405 CDS YP_758980.1 114798876 4289732 complement(238653..240104) 1 NC_008358.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 240104 flgK 4289732 flgK Hyphomonas neptunium ATCC 15444 flagellar hook-associated protein FlgK YP_758980.1 238653 R 228405 CDS YP_758981.1 114799551 4288536 complement(240131..241435) 1 NC_008358.1 identified by similarity to SP:P35806; match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook protein FlgE 241435 flgE 4288536 flgE Hyphomonas neptunium ATCC 15444 flagellar hook protein FlgE YP_758981.1 240131 R 228405 CDS YP_758982.1 114797285 4289209 complement(241554..242417) 1 NC_008358.1 identified by similarity to SP:P09349; match to protein family HMM PF00691; putative chemotaxis MotB protein 242417 4289209 HNE_0251 Hyphomonas neptunium ATCC 15444 putative chemotaxis MotB protein YP_758982.1 241554 R 228405 CDS YP_758983.1 114797535 4289496 242730..243470 1 NC_008358.1 identified by similarity to GB:BAB49920.1; match to protein family HMM PF01052; SPOA family protein 243470 4289496 HNE_0252 Hyphomonas neptunium ATCC 15444 SPOA family protein YP_758983.1 242730 D 228405 CDS YP_758984.1 114797426 4287163 243541..244407 1 NC_008358.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 244407 4287163 HNE_0253 Hyphomonas neptunium ATCC 15444 flagellar motor protein MotA YP_758984.1 243541 D 228405 CDS YP_758985.1 114798160 4287649 244404..246167 1 NC_008358.1 hypothetical protein 246167 4287649 HNE_0254 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758985.1 244404 D 228405 CDS YP_758986.1 114799934 4290088 246167..246883 1 NC_008358.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes; flagellar basal body rod protein FlgF 246883 flgF 4290088 flgF Hyphomonas neptunium ATCC 15444 flagellar basal body rod protein FlgF YP_758986.1 246167 D 228405 CDS YP_758987.1 114799186 4288403 246912..247697 1 NC_008358.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 247697 flgG 4288403 flgG Hyphomonas neptunium ATCC 15444 flagellar basal body rod protein FlgG YP_758987.1 246912 D 228405 CDS YP_758988.1 114797541 4287376 247702..248109 1 NC_008358.1 identified by match to protein family HMM PF03240; flagellar basal body P-ring formation protein FlgA 248109 flgA 4287376 flgA Hyphomonas neptunium ATCC 15444 flagellar basal body P-ring formation protein FlgA YP_758988.1 247702 D 228405 CDS YP_758989.1 114800335 4289269 248091..248810 1 NC_008358.1 identified by match to protein family HMM PF02107; flagellar L-ring protein FlgH 248810 flgH 4289269 flgH Hyphomonas neptunium ATCC 15444 flagellar L-ring protein FlgH YP_758989.1 248091 D 228405 CDS YP_758990.1 114800308 4287953 248877..249386 1 NC_008358.1 hypothetical protein 249386 4287953 HNE_0259 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758990.1 248877 D 228405 CDS YP_758991.1 114799290 4289015 complement(249425..250075) 1 NC_008358.1 identified by similarity to SP:P16321; match to protein family HMM PF03963; putative basal-body rod modification protein FlgD 250075 4289015 HNE_0260 Hyphomonas neptunium ATCC 15444 putative basal-body rod modification protein FlgD YP_758991.1 249425 R 228405 CDS YP_758992.1 114799132 4287786 complement(250085..251419) 1 NC_008358.1 identified by similarity to GB:AAC33327.1; match to protein family HMM PF02120; flagellar hook-length control protein 251419 4287786 HNE_0261 Hyphomonas neptunium ATCC 15444 flagellar hook-length control protein YP_758992.1 250085 R 228405 CDS YP_758993.1 114799762 4288046 251534..251860 1 NC_008358.1 hypothetical protein 251860 4288046 HNE_0262 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758993.1 251534 D 228405 CDS YP_758994.1 114800152 4290485 251857..252240 1 NC_008358.1 hypothetical protein 252240 4290485 HNE_0263 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_758994.1 251857 D 228405 CDS YP_758995.1 114799536 4288929 252387..253634 1 NC_008358.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin Laf1 253634 4288929 HNE_0264 Hyphomonas neptunium ATCC 15444 flagellin Laf1 YP_758995.1 252387 D 228405 CDS YP_758996.1 114798597 4290500 253746..254132 1 NC_008358.1 putative flagellar biosynthesis regulatory protein 254132 4290500 HNE_0265 Hyphomonas neptunium ATCC 15444 putative flagellar biosynthesis regulatory protein YP_758996.1 253746 D 228405 CDS YP_758997.1 114797786 4289630 254132..254557 1 NC_008358.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 254557 flbT 4289630 flbT Hyphomonas neptunium ATCC 15444 flagellar biosynthesis repressor FlbT YP_758997.1 254132 D 228405 CDS YP_758998.1 114800299 4287944 254559..255407 1 NC_008358.1 putative flagellar protein 255407 4287944 HNE_0267 Hyphomonas neptunium ATCC 15444 putative flagellar protein YP_758998.1 254559 D 228405 CDS YP_758999.1 114799102 4289201 complement(255414..256802) 1 NC_008358.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; flagellar protein export ATPase FliI 256802 fliI 4289201 fliI Hyphomonas neptunium ATCC 15444 flagellar protein export ATPase FliI YP_758999.1 255414 R 228405 CDS YP_759000.1 114798179 4287997 256887..257258 1 NC_008358.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 257258 flgB 4287997 flgB Hyphomonas neptunium ATCC 15444 flagellar basal body rod protein FlgB YP_759000.1 256887 D 228405 CDS YP_759001.1 114797235 4287341 257273..257659 1 NC_008358.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein 257659 4287341 HNE_0270 Hyphomonas neptunium ATCC 15444 flagellar basal-body rod protein YP_759001.1 257273 D 228405 CDS YP_759002.1 114799787 4289804 257672..257971 1 NC_008358.1 flagellar hook-basal body complex protein FliE 257971 fliE 4289804 fliE Hyphomonas neptunium ATCC 15444 flagellar hook-basal body complex protein FliE YP_759002.1 257672 D 228405 CDS YP_759003.1 114797953 4289565 257990..258253 1 NC_008358.1 identified by similarity to SP:P33134; match to protein family HMM PF01313; flagellar biosynthetic protein fliQ 258253 fliQ 4289565 fliQ Hyphomonas neptunium ATCC 15444 flagellar biosynthetic protein fliQ YP_759003.1 257990 D 228405 CDS YP_759004.1 114797604 4288316 258263..260341 1 NC_008358.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 260341 flhA 4288316 flhA Hyphomonas neptunium ATCC 15444 flagellar biosynthesis protein FlhA YP_759004.1 258263 D 228405 CDS YP_759005.1 114799957 4290112 260383..261096 1 NC_008358.1 identified by similarity to SP:Q45975; flagellar biosynthetic protein FliR 261096 4290112 HNE_0274 Hyphomonas neptunium ATCC 15444 flagellar biosynthetic protein FliR YP_759005.1 260383 D 228405 CDS YP_759006.1 114799674 4288696 261106..262179 1 NC_008358.1 identified by match to protein family HMM PF01312; FlhB/HrpN/YscU/SpaS family protein 262179 4288696 HNE_0275 Hyphomonas neptunium ATCC 15444 FlhB/HrpN/YscU/SpaS family protein YP_759006.1 261106 D 228405 CDS YP_759007.1 114798442 4290304 262176..262511 1 NC_008358.1 hypothetical protein 262511 4290304 HNE_0276 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759007.1 262176 D 228405 CDS YP_759008.1 114797988 4289309 complement(262559..263398) 1 NC_008358.1 hypothetical protein 263398 4289309 HNE_0277 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759008.1 262559 R 228405 CDS YP_759009.1 114797237 4287343 263458..264630 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 264630 4287343 HNE_0278 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_759009.1 263458 D 228405 CDS YP_759010.1 114797349 4287203 complement(264638..266413) 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 266413 4287203 HNE_0279 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_759010.1 264638 R 228405 CDS YP_759011.1 114799435 4289339 complement(266410..266973) 1 NC_008358.1 identified by match to protein family HMM PF01590; GAF domain-containing protein 266973 4289339 HNE_0280 Hyphomonas neptunium ATCC 15444 GAF domain-containing protein YP_759011.1 266410 R 228405 CDS YP_759012.1 114799169 4288386 complement(267448..268089) 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 268089 4288386 HNE_0281 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_759012.1 267448 R 228405 CDS YP_759013.1 114799499 4288892 complement(270096..270533) 1 NC_008358.1 hypothetical protein 270533 4288892 HNE_0283 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759013.1 270096 R 228405 CDS YP_759014.1 114798348 4288631 complement(271099..273480) 1 NC_008358.1 identified by similarity to SP:P55386; hypothetical protein 273480 4288631 HNE_0284 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759014.1 271099 R 228405 CDS YP_759015.1 114797220 4289937 complement(273437..275680) 1 NC_008358.1 identified by similarity to GB:AAM71921.1; hypothetical protein 275680 4289937 HNE_0285 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759015.1 273437 R 228405 CDS YP_759016.1 114799924 4290254 complement(277020..278174) 1 NC_008358.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein 278174 4290254 HNE_0286 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_759016.1 277020 R 228405 CDS YP_759017.1 114799235 4288298 complement(278171..279541) 1 NC_008358.1 identified by similarity to GB:CAI07457.1; hypothetical protein 279541 4288298 HNE_0287 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759017.1 278171 R 228405 CDS YP_759018.1 114798126 4287594 complement(279534..280094) 1 NC_008358.1 hypothetical protein 280094 4287594 HNE_0288 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759018.1 279534 R 228405 CDS YP_759019.1 114797203 4287074 280516..281541 1 NC_008358.1 hypothetical protein 281541 4287074 HNE_0289 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759019.1 280516 D 228405 CDS YP_759020.1 114799916 4290246 281535..282287 1 NC_008358.1 identified by similarity to GB:CAD63078.1; hypothetical protein 282287 4290246 HNE_0290 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759020.1 281535 D 228405 CDS YP_759021.1 114798239 4288932 282297..282572 1 NC_008358.1 identified by similarity to GB:AAN69291.1; hypothetical protein 282572 4288932 HNE_0291 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759021.1 282297 D 228405 CDS YP_759022.1 114799242 4288305 complement(282583..283644) 1 NC_008358.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 283644 4288305 HNE_0292 Hyphomonas neptunium ATCC 15444 phage integrase family site specific recombinase YP_759022.1 282583 R 228405 CDS YP_759023.1 114799763 4288047 283755..284741 1 NC_008358.1 identified by similarity to SP:P32695; match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 284741 dusA 4288047 dusA Hyphomonas neptunium ATCC 15444 tRNA-dihydrouridine synthase A YP_759023.1 283755 D 228405 CDS YP_759024.1 114799463 4290044 284928..286418 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 286418 4290044 HNE_0294 Hyphomonas neptunium ATCC 15444 sensor histidine kinase/response regulator YP_759024.1 284928 D 228405 CDS YP_759025.1 114800449 4288191 286415..288151 1 NC_008358.1 identified by similarity to SP:P36670; putative muropeptide permease AmpG 288151 4288191 HNE_0295 Hyphomonas neptunium ATCC 15444 putative muropeptide permease AmpG YP_759025.1 286415 D 228405 CDS YP_759026.1 114797897 4288085 complement(288170..290437) 1 NC_008358.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 290437 maeB 4288085 maeB Hyphomonas neptunium ATCC 15444 malic enzyme YP_759026.1 288170 R 228405 CDS YP_759027.1 114798005 4290061 290586..293258 1 NC_008358.1 identified by similarity to SP:P10339; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS 293258 mutS 4290061 mutS Hyphomonas neptunium ATCC 15444 DNA mismatch repair protein MutS YP_759027.1 290586 D 228405 CDS YP_759028.1 114799878 4287461 complement(293255..293941) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 293941 4287461 HNE_0298 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_759028.1 293255 R 228405 CDS YP_759029.1 114797344 4287198 294162..295220 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 295220 4287198 HNE_0299 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_759029.1 294162 D 228405 CDS YP_759030.1 114798356 4290413 complement(295227..295631) 1 NC_008358.1 putative lipoprotein 295631 4290413 HNE_0300 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759030.1 295227 R 228405 CDS YP_759031.1 114797474 4288419 complement(295659..296609) 1 NC_008358.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 296609 gshB 4288419 gshB Hyphomonas neptunium ATCC 15444 glutathione synthetase YP_759031.1 295659 R 228405 CDS YP_759032.1 114798138 4287606 complement(296677..297396) 1 NC_008358.1 identified by match to protein family HMM PF04972; phospholipid-binding protein 297396 4287606 HNE_0302 Hyphomonas neptunium ATCC 15444 phospholipid-binding protein YP_759032.1 296677 R 228405 CDS YP_759033.1 114798826 4287556 297745..297987 1 NC_008358.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 297987 4287556 HNE_0303 Hyphomonas neptunium ATCC 15444 iojap family protein YP_759033.1 297745 D 228405 CDS YP_759034.1 114797356 4287210 297992..298456 1 NC_008358.1 identified by similarity to GB:CAE25611.1; match to protein family HMM PF02590; hypothetical protein 298456 4287210 HNE_0304 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759034.1 297992 D 228405 CDS YP_759035.1 114798052 4289527 298538..299851 1 NC_008358.1 TRAP transporter solute receptor TAXI family protein 299851 4289527 HNE_0305 Hyphomonas neptunium ATCC 15444 TRAP transporter solute receptor TAXI family protein YP_759035.1 298538 D 228405 CDS YP_759036.1 114798849 4287813 complement(299869..300744) 1 NC_008358.1 identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein 300744 4287813 HNE_0306 Hyphomonas neptunium ATCC 15444 LytTr DNA-binding domain-containing protein YP_759036.1 299869 R 228405 CDS YP_759037.1 114797842 4288786 300955..301350 1 NC_008358.1 hypothetical protein 301350 4288786 HNE_0307 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759037.1 300955 D 228405 CDS YP_759038.1 114797837 4288781 301420..302646 1 NC_008358.1 alkaline phosphatase-like protein 302646 4288781 HNE_0308 Hyphomonas neptunium ATCC 15444 alkaline phosphatase-like protein YP_759038.1 301420 D 228405 CDS YP_759039.1 114798591 4290494 302686..303930 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 303930 4290494 HNE_0309 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759039.1 302686 D 228405 CDS YP_759040.1 114799396 4288518 304074..305267 1 NC_008358.1 identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 305267 sucC 4288518 sucC Hyphomonas neptunium ATCC 15444 succinyl-CoA synthetase subunit beta YP_759040.1 304074 D 228405 CDS YP_759041.1 114798328 4287111 305272..306174 1 NC_008358.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 306174 sucD 4287111 sucD Hyphomonas neptunium ATCC 15444 succinyl-CoA synthetase subunit alpha YP_759041.1 305272 D 228405 CDS YP_759042.1 114800323 4289257 306324..309332 1 NC_008358.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 309332 sucA 4289257 sucA Hyphomonas neptunium ATCC 15444 2-oxoglutarate dehydrogenase E1 component YP_759042.1 306324 D 228405 CDS YP_759043.1 114799329 4290163 309362..310912 1 NC_008358.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 310912 sucB 4290163 sucB Hyphomonas neptunium ATCC 15444 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase YP_759043.1 309362 D 228405 CDS YP_759044.1 114799483 4289174 complement(310909..311622) 1 NC_008358.1 identified by similarity to GB:BAC88477.1; hypothetical protein 311622 4289174 HNE_0314 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759044.1 310909 R 228405 CDS YP_759045.1 114798543 4288108 311781..312653 1 NC_008358.1 identified by match to protein family HMM PF02798; glutathione S-transferase 312653 4288108 HNE_0315 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_759045.1 311781 D 228405 CDS YP_759046.1 114797156 4287615 312657..313634 1 NC_008358.1 hypothetical protein 313634 4287615 HNE_0316 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759046.1 312657 D 228405 CDS YP_759047.1 114797698 4289348 313726..314070 1 NC_008358.1 identified by match to protein family HMM PF01817; putative chorismate mutase, type II 314070 4289348 HNE_0317 Hyphomonas neptunium ATCC 15444 putative chorismate mutase, type II YP_759047.1 313726 D 228405 CDS YP_759048.1 114800541 4288886 complement(314031..314417) 1 NC_008358.1 hypothetical protein 314417 4288886 HNE_0318 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759048.1 314031 R 228405 CDS YP_759049.1 114800204 4288978 314588..314731 1 NC_008358.1 hypothetical protein 314731 4288978 HNE_0319 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759049.1 314588 D 228405 CDS YP_759050.1 114798902 4288488 314814..316808 1 NC_008358.1 hypothetical protein 316808 4288488 HNE_0320 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759050.1 314814 D 228405 CDS YP_759051.1 114798673 4289854 complement(316818..317750) 1 NC_008358.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 317750 4289854 HNE_0321 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_759051.1 316818 R 228405 CDS YP_759052.1 114800230 4289004 317859..319310 1 NC_008358.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; siroheme synthase 319310 cysG 4289004 cysG Hyphomonas neptunium ATCC 15444 siroheme synthase YP_759052.1 317859 D 228405 CDS YP_759053.1 114797102 4287969 319307..319630 1 NC_008358.1 hypothetical protein 319630 4287969 HNE_0323 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759053.1 319307 D 228405 CDS YP_759054.1 114798341 4288624 319630..320253 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 320253 4288624 HNE_0324 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_759054.1 319630 D 228405 CDS YP_759055.1 114798651 4290397 320253..321911 1 NC_008358.1 identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460; putative sulfite reductase 321911 4290397 HNE_0325 Hyphomonas neptunium ATCC 15444 putative sulfite reductase YP_759055.1 320253 D 228405 CDS YP_759056.1 114799901 4290230 321898..322380 1 NC_008358.1 identified by similarity to GB:AAU91667.1; match to protein family HMM PF06073; hypothetical protein 322380 4290230 HNE_0326 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759056.1 321898 D 228405 CDS YP_759057.1 114798004 4290060 322398..323132 1 NC_008358.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 323132 cysH 4290060 cysH Hyphomonas neptunium ATCC 15444 phosphoadenosine phosphosulfate reductase YP_759057.1 322398 D 228405 CDS YP_759058.1 114799577 4289073 complement(323239..324048) 1 NC_008358.1 identified by match to protein family HMM PF00588; RNA methyltransferase 324048 4289073 HNE_0328 Hyphomonas neptunium ATCC 15444 RNA methyltransferase YP_759058.1 323239 R 228405 CDS YP_759059.1 114800064 4289387 complement(324079..324411) 1 NC_008358.1 identified by similarity to GB:AAU49484.1; hypothetical protein 324411 4289387 HNE_0329 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759059.1 324079 R 228405 CDS YP_759060.1 114797392 4287088 complement(324491..325387) 1 NC_008358.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 325387 rpoH 4287088 rpoH Hyphomonas neptunium ATCC 15444 RNA polymerase factor sigma-32 YP_759060.1 324491 R 228405 CDS YP_759061.1 114798141 4290374 complement(325779..326921) 1 NC_008358.1 identified by match to protein family HMM PF03969; AFG1 family ATPase 326921 4290374 HNE_0331 Hyphomonas neptunium ATCC 15444 AFG1 family ATPase YP_759061.1 325779 R 228405 CDS YP_759062.1 114799025 4287542 complement(326937..327551) 1 NC_008358.1 identified by match to protein family HMM PF01694; S54 family peptidase 327551 4287542 HNE_0332 Hyphomonas neptunium ATCC 15444 S54 family peptidase YP_759062.1 326937 R 228405 CDS YP_759063.1 114799030 4287547 complement(327659..328108) 1 NC_008358.1 identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein 328108 4287547 HNE_0333 Hyphomonas neptunium ATCC 15444 response regulator receiver domain-containing protein YP_759063.1 327659 R 228405 CDS YP_759064.1 114798280 4287221 328188..328322 1 NC_008358.1 hypothetical protein 328322 4287221 HNE_0334 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759064.1 328188 D 228405 CDS YP_759065.1 114800146 4290479 328339..329244 1 NC_008358.1 identified by match to protein family HMM PF01553; acyltransferase domain-containing protein 329244 4290479 HNE_0335 Hyphomonas neptunium ATCC 15444 acyltransferase domain-containing protein YP_759065.1 328339 D 228405 CDS YP_759066.1 114799412 4289549 329316..329807 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 329807 4289549 HNE_0336 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759066.1 329316 D 228405 CDS YP_759067.1 114798518 4290322 329928..331277 1 NC_008358.1 identified by similarity to SP:P36670; match to protein family HMM PF07690; peptide-acetyl-coenzyme A transporter (PAT) family protein 331277 4290322 HNE_0337 Hyphomonas neptunium ATCC 15444 peptide-acetyl-coenzyme A transporter (PAT) family protein YP_759067.1 329928 D 228405 CDS YP_759068.1 114797790 4289634 complement(331302..333341) 1 NC_008358.1 identified by similarity to GB:BAB49793.1; hypothetical protein 333341 4289634 HNE_0338 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759068.1 331302 R 228405 CDS YP_759069.1 114800527 4288872 complement(333338..336214) 1 NC_008358.1 identified by match to protein family HMM TIGR02226; hypothetical protein 336214 4288872 HNE_0339 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759069.1 333338 R 228405 CDS YP_759070.1 114797646 4289040 complement(336211..337077) 1 NC_008358.1 identified by similarity to PIR:C97630; hypothetical protein 337077 4289040 HNE_0340 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759070.1 336211 R 228405 CDS YP_759071.1 114798095 4288243 complement(337074..337463) 1 NC_008358.1 putative lipoprotein 337463 4288243 HNE_0341 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759071.1 337074 R 228405 CDS YP_759072.1 114799543 4288528 complement(337460..338458) 1 NC_008358.1 identified by match to protein family HMM PF07726; AAA ATPase 338458 4288528 HNE_0342 Hyphomonas neptunium ATCC 15444 AAA ATPase YP_759072.1 337460 R 228405 CDS YP_759073.1 114798915 4288501 338534..339121 1 NC_008358.1 identified by similarity to PIR:AG3309; match to protein family HMM PF06938; hypothetical protein 339121 4288501 HNE_0343 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759073.1 338534 D 228405 CDS YP_759074.1 114799866 4287448 339131..339754 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 339754 4287448 HNE_0344 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_759074.1 339131 D 228405 CDS YP_759075.1 114798320 4287103 339839..340189 1 NC_008358.1 hypothetical protein 340189 4287103 HNE_0345 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759075.1 339839 D 228405 CDS YP_759076.1 114799278 4288593 340236..341381 1 NC_008358.1 identified by match to protein family HMM PF01743; tRNA nucleotidyltransferase/poly(A) polymerase family protein 341381 4288593 HNE_0346 Hyphomonas neptunium ATCC 15444 tRNA nucleotidyltransferase/poly(A) polymerase family protein YP_759076.1 340236 D 228405 CDS YP_759077.1 114800278 4287923 341509..341733 1 NC_008358.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR02609; putative addiction module antidote 341733 4287923 HNE_0347 Hyphomonas neptunium ATCC 15444 putative addiction module antidote YP_759077.1 341509 D 228405 CDS YP_759078.1 114797849 4287118 341730..342116 1 NC_008358.1 identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; putative addiction module toxin 342116 4287118 HNE_0348 Hyphomonas neptunium ATCC 15444 putative addiction module toxin YP_759078.1 341730 D 228405 CDS YP_759079.1 114798887 4287578 complement(342121..343014) 1 NC_008358.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 343014 hemF 4287578 hemF Hyphomonas neptunium ATCC 15444 coproporphyrinogen III oxidase YP_759079.1 342121 R 228405 CDS YP_759080.1 114798737 4289300 343216..343779 1 NC_008358.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 343779 petA 4289300 petA Hyphomonas neptunium ATCC 15444 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_759080.1 343216 D 228405 CDS YP_759081.1 114797745 4288282 343795..345255 1 NC_008358.1 identified by similarity to SP:P08502; match to protein family HMM PF00032; match to protein family HMM PF00033; putative ubiquinol-cytochrome c reductase, cytochrome b 345255 4288282 HNE_0351 Hyphomonas neptunium ATCC 15444 putative ubiquinol-cytochrome c reductase, cytochrome b YP_759081.1 343795 D 228405 CDS YP_759082.1 114797363 4287294 345281..346240 1 NC_008358.1 identified by similarity to SP:P23135; match to protein family HMM PF02167; putative ubiquinol-cytochrome c reductase, cytochrome c1 346240 4287294 HNE_0352 Hyphomonas neptunium ATCC 15444 putative ubiquinol-cytochrome c reductase, cytochrome c1 YP_759082.1 345281 D 228405 CDS YP_759083.1 114799462 4290043 346256..346774 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 346774 4290043 HNE_0353 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759083.1 346256 D 228405 CDS YP_759084.1 114798898 4288484 346771..347649 1 NC_008358.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694; methylthioadenosine phosphorylase 347649 mtaP 4288484 mtaP Hyphomonas neptunium ATCC 15444 methylthioadenosine phosphorylase YP_759084.1 346771 D 228405 CDS YP_759085.1 114797053 4287021 347721..348719 1 NC_008358.1 hypothetical protein 348719 4287021 HNE_0355 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759085.1 347721 D 228405 CDS YP_759086.1 114799850 4287432 348691..349173 1 NC_008358.1 identified by similarity to GB:AAK24445.1; putative lipoprotein 349173 4287432 HNE_0356 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759086.1 348691 D 228405 CDS YP_759087.1 114799643 4290283 complement(349255..349803) 1 NC_008358.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 349803 4290283 HNE_0357 Hyphomonas neptunium ATCC 15444 fasciclin domain-containing protein YP_759087.1 349255 R 228405 CDS YP_759088.1 114799966 4290180 complement(349930..350493) 1 NC_008358.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 350493 4290180 HNE_0358 Hyphomonas neptunium ATCC 15444 fasciclin domain-containing protein YP_759088.1 349930 R 228405 CDS YP_759089.1 114800417 4290361 complement(350712..351245) 1 NC_008358.1 identified by match to protein family HMM PF02469; fasciclin domain-containing protein 351245 4290361 HNE_0359 Hyphomonas neptunium ATCC 15444 fasciclin domain-containing protein YP_759089.1 350712 R 228405 CDS YP_759090.1 114797950 4289562 351455..352165 1 NC_008358.1 identified by match to protein family HMM PF00226; DnaJ family molecular chaperone 352165 4289562 HNE_0360 Hyphomonas neptunium ATCC 15444 DnaJ family molecular chaperone YP_759090.1 351455 D 228405 CDS YP_759091.1 114798970 4287427 352256..352540 1 NC_008358.1 hypothetical protein 352540 4287427 HNE_0361 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759091.1 352256 D 228405 CDS YP_759092.1 114799706 4289124 complement(352622..353560) 1 NC_008358.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase 353560 prs 4289124 prs Hyphomonas neptunium ATCC 15444 ribose-phosphate pyrophosphokinase YP_759092.1 352622 R 228405 CDS YP_759093.1 114797428 4287165 complement(353684..354448) 1 NC_008358.1 identified by similarity to GB:CAE29801.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 354448 4287165 HNE_0363 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759093.1 353684 R 228405 CDS YP_759094.1 114798286 4287227 354630..356462 1 NC_008358.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 356462 typA 4287227 typA Hyphomonas neptunium ATCC 15444 GTP-binding protein TypA YP_759094.1 354630 D 228405 CDS YP_759095.1 114799547 4288532 complement(356489..356863) 1 NC_008358.1 identified by similarity to GB:AAM36520.1; putative lipoprotein 356863 4288532 HNE_0365 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759095.1 356489 R 228405 CDS YP_759096.1 114799103 4289202 357030..357215 1 NC_008358.1 hypothetical protein 357215 4289202 HNE_0366 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759096.1 357030 D 228405 CDS YP_759097.1 114799607 4289103 complement(357286..358482) 1 NC_008358.1 hypothetical protein 358482 4289103 HNE_0367 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759097.1 357286 R 228405 CDS YP_759098.1 114799937 4290092 complement(358788..359132) 1 NC_008358.1 hypothetical protein 359132 4290092 HNE_0368 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759098.1 358788 R 228405 CDS YP_759099.1 114799208 4289577 359705..360382 1 NC_008358.1 hypothetical protein 360382 4289577 HNE_0369 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759099.1 359705 D 228405 CDS YP_759100.1 114799985 4290200 complement(360379..360984) 1 NC_008358.1 identified by similarity to SP:Q9XAI4; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 360984 recR 4290200 recR Hyphomonas neptunium ATCC 15444 recombination protein RecR YP_759100.1 360379 R 228405 CDS YP_759101.1 114797665 4288143 complement(361108..361431) 1 NC_008358.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 361431 4288143 HNE_0371 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759101.1 361108 R 228405 CDS YP_759102.1 114798398 4289739 complement(361448..363184) 1 NC_008358.1 identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau 363184 dnaX 4289739 dnaX Hyphomonas neptunium ATCC 15444 DNA polymerase III subunits gamma and tau YP_759102.1 361448 R 228405 CDS YP_759103.1 114799612 4289108 complement(363300..364337) 1 NC_008358.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 364337 nrdF 4289108 nrdF Hyphomonas neptunium ATCC 15444 ribonucleotide-diphosphate reductase subunit beta YP_759103.1 363300 R 228405 CDS YP_759104.1 114800371 4288734 complement(364480..365775) 1 NC_008358.1 identified by similarity to GB:AAN58344.1; hypothetical protein 365775 4288734 HNE_0374 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759104.1 364480 R 228405 CDS YP_759105.1 114797409 4287675 complement(366022..366948) 1 NC_008358.1 identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 366948 4287675 HNE_0375 Hyphomonas neptunium ATCC 15444 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_759105.1 366022 R 228405 CDS YP_759106.1 114800129 4290462 367177..370086 1 NC_008358.1 PKD domain-containing protein 370086 4290462 HNE_0376 Hyphomonas neptunium ATCC 15444 PKD domain-containing protein YP_759106.1 367177 D 228405 CDS YP_759107.1 114797658 4288136 complement(370160..370432) 1 NC_008358.1 identified by match to protein family HMM PF05154; TM2 domain-containing protein 370432 4288136 HNE_0377 Hyphomonas neptunium ATCC 15444 TM2 domain-containing protein YP_759107.1 370160 R 228405 CDS YP_759108.1 114800392 4290336 complement(370629..370994) 1 NC_008358.1 identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 370994 4290336 HNE_0378 Hyphomonas neptunium ATCC 15444 PRC-barrel domain-containing protein YP_759108.1 370629 R 228405 CDS YP_759109.1 114799616 4290256 371146..372003 1 NC_008358.1 identified by similarity to SP:P28637; match to protein family HMM PF06325; putative ribosomal protein L11 methyltransferase PrmA 372003 4290256 HNE_0379 Hyphomonas neptunium ATCC 15444 putative ribosomal protein L11 methyltransferase PrmA YP_759109.1 371146 D 228405 CDS YP_759110.1 114798858 4289714 372145..372402 1 NC_008358.1 hypothetical protein 372402 4289714 HNE_0380 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759110.1 372145 D 228405 CDS YP_759111.1 114798047 4289522 372504..374315 1 NC_008358.1 identified by match to protein family HMM PF00557; M24 family peptidase 374315 4289522 HNE_0381 Hyphomonas neptunium ATCC 15444 M24 family peptidase YP_759111.1 372504 D 228405 CDS YP_759112.1 114797296 4289220 374437..374886 1 NC_008358.1 hypothetical protein 374886 4289220 HNE_0382 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759112.1 374437 D 228405 CDS YP_759113.1 114800032 4288824 complement(374970..376094) 1 NC_008358.1 identified by match to protein family HMM PF01120; putative alpha-L-fucosidase 376094 4288824 HNE_0383 Hyphomonas neptunium ATCC 15444 putative alpha-L-fucosidase YP_759113.1 374970 R 228405 CDS YP_759114.1 114799211 4289580 complement(376116..376847) 1 NC_008358.1 identified by similarity to GB:AAS95207.1; hypothetical protein 376847 4289580 HNE_0384 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759114.1 376116 R 228405 CDS YP_759115.1 114797433 4287170 376880..378664 1 NC_008358.1 putative DNA repair protein RecN 378664 4287170 HNE_0385 Hyphomonas neptunium ATCC 15444 putative DNA repair protein RecN YP_759115.1 376880 D 228405 CDS YP_759116.1 114797923 4287273 378661..380766 1 NC_008358.1 identified by similarity to SP:P28719; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 380766 ligA 4287273 ligA Hyphomonas neptunium ATCC 15444 NAD-dependent DNA ligase YP_759116.1 378661 D 228405 CDS YP_759117.1 114798667 4289848 complement(380786..381619) 1 NC_008358.1 identified by similarity to SP:Q50985; putative competence lipoprotein ComL 381619 4289848 HNE_0387 Hyphomonas neptunium ATCC 15444 putative competence lipoprotein ComL YP_759117.1 380786 R 228405 CDS YP_759118.1 114799059 4288958 381843..382274 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 382274 4288958 HNE_0388 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_759118.1 381843 D 228405 CDS YP_759119.1 114800236 4287471 complement(382294..383205) 1 NC_008358.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 383205 lpxC 4287471 lpxC Hyphomonas neptunium ATCC 15444 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_759119.1 382294 R 228405 CDS YP_759120.1 114797115 4287143 complement(383488..384972) 1 NC_008358.1 identified by similarity to GB:AAC44223.1; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ 384972 ftsZ 4287143 ftsZ Hyphomonas neptunium ATCC 15444 cell division protein FtsZ YP_759120.1 383488 R 228405 CDS YP_759121.1 114798337 4288620 complement(385096..386391) 1 NC_008358.1 identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 386391 ftsA 4288620 ftsA Hyphomonas neptunium ATCC 15444 cell division protein FtsA YP_759121.1 385096 R 228405 CDS YP_759122.1 114798641 4289900 complement(386391..387263) 1 NC_008358.1 identified by match to protein family HMM PF03799; putative cell division protein FtsQ 387263 4289900 HNE_0392 Hyphomonas neptunium ATCC 15444 putative cell division protein FtsQ YP_759122.1 386391 R 228405 CDS YP_759123.1 114799909 4290239 complement(387251..388171) 1 NC_008358.1 identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase 388171 4290239 HNE_0393 Hyphomonas neptunium ATCC 15444 D-alanine--D-alanine ligase YP_759123.1 387251 R 228405 CDS YP_759124.1 114798082 4288230 388448..390490 1 NC_008358.1 identified by similarity to GB:AAK22211.1; match to protein family HMM PF07715; hypothetical protein 390490 4288230 HNE_0394 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759124.1 388448 D 228405 CDS YP_759125.1 114799295 4289020 390627..391298 1 NC_008358.1 identified by similarity to SP:O28592; hypothetical protein 391298 4289020 HNE_0395 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759125.1 390627 D 228405 CDS YP_759126.1 114800234 4289008 391307..391780 1 NC_008358.1 identified by match to protein family HMM TIGR02391; hypothetical protein 391780 4289008 HNE_0396 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759126.1 391307 D 228405 CDS YP_759127.1 114799112 4289907 complement(391893..392864) 1 NC_008358.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase 392864 murB 4289907 murB Hyphomonas neptunium ATCC 15444 UDP-N-acetylenolpyruvoylglucosamine reductase YP_759127.1 391893 R 228405 CDS YP_759128.1 114800549 4289051 complement(392949..393566) 1 NC_008358.1 hypothetical protein 393566 4289051 HNE_0398 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759128.1 392949 R 228405 CDS YP_759129.1 114797839 4288783 393820..396267 1 NC_008358.1 identified by similarity to SP:Q9RQQ9; match to protein family HMM PF00512; match to protein family HMM PF02518; putative tyrosine kinase DivL 396267 4288783 HNE_0399 Hyphomonas neptunium ATCC 15444 putative tyrosine kinase DivL YP_759129.1 393820 D 228405 CDS YP_759130.1 114800433 4288175 complement(396465..397778) 1 NC_008358.1 identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter 397778 4288175 HNE_0400 Hyphomonas neptunium ATCC 15444 sodium/dicarboxylate symporter YP_759130.1 396465 R 228405 CDS YP_759131.1 114797192 4287063 397904..400342 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970; ATP-dependent helicase HrpB 400342 hrpB 4287063 hrpB Hyphomonas neptunium ATCC 15444 ATP-dependent helicase HrpB YP_759131.1 397904 D 228405 CDS YP_759132.1 114798405 4289746 400364..401806 1 NC_008358.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 401806 dacB 4289746 dacB Hyphomonas neptunium ATCC 15444 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_759132.1 400364 D 228405 CDS YP_759133.1 114799648 4290288 complement(401819..402247) 1 NC_008358.1 hypothetical protein 402247 4290288 HNE_0403 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759133.1 401819 R 228405 CDS YP_759134.1 114799368 4288839 complement(402417..403988) 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 403988 4288839 HNE_0404 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_759134.1 402417 R 228405 CDS YP_759135.1 114800193 4290037 complement(404087..405220) 1 NC_008358.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 405220 4290037 HNE_0405 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_759135.1 404087 R 228405 CDS YP_759136.1 114797970 4288333 complement(405333..405980) 1 NC_008358.1 identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein 405980 4288333 HNE_0406 Hyphomonas neptunium ATCC 15444 RNA pseudouridine synthase family protein YP_759136.1 405333 R 228405 CDS YP_759137.1 114798787 4287769 complement(405977..407401) 1 NC_008358.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 407401 4287769 HNE_0407 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_759137.1 405977 R 228405 CDS YP_759138.1 114800416 4290360 complement(407462..408895) 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 408895 4290360 HNE_0408 Hyphomonas neptunium ATCC 15444 pyridine nucleotide-disulfide oxidoreductase YP_759138.1 407462 R 228405 CDS YP_759139.1 114799681 4288703 complement(408888..409640) 1 NC_008358.1 hypothetical protein 409640 4288703 HNE_0409 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759139.1 408888 R 228405 CDS YP_759140.1 114798537 4288102 complement(409755..410624) 1 NC_008358.1 identified by similarity to GB:CAG18846.1; hypothetical protein 410624 4288102 HNE_0410 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759140.1 409755 R 228405 CDS YP_759141.1 114799990 4290205 complement(410702..411877) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 411877 4290205 HNE_0411 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_759141.1 410702 R 228405 CDS YP_759142.1 114800039 4288831 412071..412205 1 NC_008358.1 identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 412205 rpmH 4288831 rpmH Hyphomonas neptunium ATCC 15444 50S ribosomal protein L34 YP_759142.1 412071 D 228405 CDS YP_759143.1 114798810 4289160 412243..412608 1 NC_008358.1 identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 412608 rnpA 4289160 rnpA Hyphomonas neptunium ATCC 15444 ribonuclease P protein component YP_759143.1 412243 D 228405 CDS YP_759144.1 114798266 4287246 412663..414483 1 NC_008358.1 identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa 414483 4287246 HNE_0414 Hyphomonas neptunium ATCC 15444 inner membrane protein, 60 kDa YP_759144.1 412663 D 228405 CDS YP_759145.1 114797282 4290546 414487..415149 1 NC_008358.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 415149 engB 4290546 engB Hyphomonas neptunium ATCC 15444 ribosome biogenesis GTP-binding protein YsxC YP_759145.1 414487 D 228405 CDS YP_759146.1 114799269 4288584 415186..415647 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 415647 4288584 HNE_0416 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759146.1 415186 D 228405 CDS YP_759147.1 114799999 4290214 415707..415949 1 NC_008358.1 hypothetical protein 415949 4290214 HNE_0417 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759147.1 415707 D 228405 CDS YP_759148.1 114798995 4288427 416012..416905 1 NC_008358.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 416905 argB 4288427 argB Hyphomonas neptunium ATCC 15444 acetylglutamate kinase YP_759148.1 416012 D 228405 CDS YP_759149.1 114797989 4289310 416880..417911 1 NC_008358.1 identified by similarity to GB:BAC53367.1; hypothetical protein 417911 4289310 HNE_0419 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759149.1 416880 D 228405 CDS YP_759150.1 114797054 4287022 417908..418651 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993; pyrimidine 5'-nucleotidase 418651 4287022 HNE_0420 Hyphomonas neptunium ATCC 15444 pyrimidine 5'-nucleotidase YP_759150.1 417908 D 228405 CDS YP_759151.1 114799814 4290122 418669..419496 1 NC_008358.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 419496 dapD 4290122 dapD Hyphomonas neptunium ATCC 15444 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_759151.1 418669 D 228405 CDS YP_759152.1 114799481 4289172 419571..419798 1 NC_008358.1 identified by similarity to GB:BAC68232.1; hypothetical protein 419798 4289172 HNE_0422 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759152.1 419571 D 228405 CDS YP_759153.1 114797704 4289354 419937..420983 1 NC_008358.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07536; putative sensor histidine kinase 420983 4289354 HNE_0423 Hyphomonas neptunium ATCC 15444 putative sensor histidine kinase YP_759153.1 419937 D 228405 CDS YP_759154.1 114800336 4289270 complement(421009..421767) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 421767 4289270 HNE_0424 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_759154.1 421009 R 228405 CDS YP_759155.1 114799310 4287319 421842..422993 1 NC_008358.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 422993 4287319 HNE_0425 Hyphomonas neptunium ATCC 15444 glycosyl transferase family protein YP_759155.1 421842 D 228405 CDS YP_759156.1 114798117 4289612 423046..424035 1 NC_008358.1 identified by match to protein family HMM PF01075; heptosyltransferase family protein 424035 4289612 HNE_0426 Hyphomonas neptunium ATCC 15444 heptosyltransferase family protein YP_759156.1 423046 D 228405 CDS YP_759157.1 114799180 4288397 complement(424065..426581) 1 NC_008358.1 identified by similarity to GB:AAK25319.1; hypothetical protein 426581 4288397 HNE_0427 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759157.1 424065 R 228405 CDS YP_759158.1 114799954 4290109 426869..427411 1 NC_008358.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 427411 infC 4290109 infC Hyphomonas neptunium ATCC 15444 translation initiation factor IF-3 YP_759158.1 426869 D 228405 CDS YP_759159.1 114797173 4287043 427573..428574 1 NC_008358.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07536; putative sensory box sensor histidine kinase 428574 4287043 HNE_0429 Hyphomonas neptunium ATCC 15444 putative sensory box sensor histidine kinase YP_759159.1 427573 D 228405 CDS YP_759160.1 114797968 4288331 428731..428931 1 NC_008358.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 428931 rpmI 4288331 rpmI Hyphomonas neptunium ATCC 15444 50S ribosomal protein L35 YP_759160.1 428731 D 228405 CDS YP_759161.1 114798735 4289298 428990..429352 1 NC_008358.1 identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032; 50S ribosomal protein L20 429352 rplT 4289298 rplT Hyphomonas neptunium ATCC 15444 50S ribosomal protein L20 YP_759161.1 428990 D 228405 CDS YP_759162.1 114798827 4287557 429374..429535 1 NC_008358.1 hypothetical protein 429535 4287557 HNE_0432 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759162.1 429374 D 228405 CDS YP_759163.1 114800189 4290033 429669..430745 1 NC_008358.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 430745 pheS 4290033 pheS Hyphomonas neptunium ATCC 15444 phenylalanyl-tRNA synthetase subunit alpha YP_759163.1 429669 D 228405 CDS YP_759164.1 114797877 4288667 430742..431221 1 NC_008358.1 identified by similarity to PIR:H85525; match to protein family HMM PF06171; hypothetical protein 431221 4288667 HNE_0434 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759164.1 430742 D 228405 CDS YP_759165.1 114798222 4288603 431218..433611 1 NC_008358.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 433611 pheT 4288603 pheT Hyphomonas neptunium ATCC 15444 phenylalanyl-tRNA synthetase subunit beta YP_759165.1 431218 D 228405 CDS YP_759166.1 114797481 4289696 433636..434457 1 NC_008358.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885; cation channel family protein 434457 4289696 HNE_0436 Hyphomonas neptunium ATCC 15444 cation channel family protein YP_759166.1 433636 D 228405 CDS YP_759167.1 114798226 4288607 434450..435280 1 NC_008358.1 identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 435280 dapB 4288607 dapB Hyphomonas neptunium ATCC 15444 dihydrodipicolinate reductase YP_759167.1 434450 D 228405 CDS YP_759168.1 114798812 4289162 435380..435784 1 NC_008358.1 identified by match to protein family HMM PF03610; PTS system mannose/fructose/sorbose family transporter subunit IID 435784 4289162 HNE_0438 Hyphomonas neptunium ATCC 15444 PTS system mannose/fructose/sorbose family transporter subunit IID YP_759168.1 435380 D 228405 CDS YP_759169.1 114800448 4288190 435784..436077 1 NC_008358.1 identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 436077 4288190 HNE_0439 Hyphomonas neptunium ATCC 15444 phosphocarrier protein HPr YP_759169.1 435784 D 228405 CDS YP_759170.1 114797728 4289243 complement(436088..437647) 1 NC_008358.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 437647 leuA 4289243 leuA Hyphomonas neptunium ATCC 15444 2-isopropylmalate synthase YP_759170.1 436088 R 228405 CDS YP_759171.1 114798677 4289858 complement(437799..438548) 1 NC_008358.1 identified by similarity to GB:AAK23517.1; hypothetical protein 438548 4289858 HNE_0441 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759171.1 437799 R 228405 CDS YP_759172.1 114799268 4288583 complement(438602..439570) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 439570 4288583 HNE_0442 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759172.1 438602 R 228405 CDS YP_759173.1 114797412 4287678 439717..440322 1 NC_008358.1 identified by similarity to GB:CAE09532.1; hypothetical protein 440322 4287678 HNE_0443 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759173.1 439717 D 228405 CDS YP_759174.1 114798291 4287232 complement(440319..440783) 1 NC_008358.1 identified by match to protein family HMM PF04519; putative lipoprotein 440783 4287232 HNE_0444 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759174.1 440319 R 228405 CDS YP_759175.1 114798870 4289726 440872..441546 1 NC_008358.1 identified by match to protein family HMM PF01183; glycosyl hydrolase family protein 441546 4289726 HNE_0445 Hyphomonas neptunium ATCC 15444 glycosyl hydrolase family protein YP_759175.1 440872 D 228405 CDS YP_759176.1 114797502 4287631 complement(441554..442120) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 442120 4287631 HNE_0446 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759176.1 441554 R 228405 CDS YP_759177.1 114800540 4288885 complement(442135..443154) 1 NC_008358.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 443154 ilvC 4288885 ilvC Hyphomonas neptunium ATCC 15444 ketol-acid reductoisomerase YP_759177.1 442135 R 228405 CDS YP_759178.1 114798195 4288013 complement(443205..443828) 1 NC_008358.1 hypothetical protein 443828 4288013 HNE_0448 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759178.1 443205 R 228405 CDS YP_759179.1 114797563 4287281 complement(443828..444394) 1 NC_008358.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 444394 ilvH 4287281 ilvH Hyphomonas neptunium ATCC 15444 acetolactate synthase 3 regulatory subunit YP_759179.1 443828 R 228405 CDS YP_759180.1 114799718 4289136 complement(444391..445092) 1 NC_008358.1 hypothetical protein 445092 4289136 HNE_0450 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759180.1 444391 R 228405 CDS YP_759181.1 114799168 4288385 complement(445126..446862) 1 NC_008358.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit, biosynthetic type 446862 ilvB 4288385 ilvB Hyphomonas neptunium ATCC 15444 acetolactate synthase large subunit, biosynthetic type YP_759181.1 445126 R 228405 CDS YP_759182.1 114798380 4288372 complement(447110..448060) 1 NC_008358.1 identified by similarity to SP:P38436; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 448060 miaA 4288372 miaA Hyphomonas neptunium ATCC 15444 tRNA delta(2)-isopentenylpyrophosphate transferase YP_759182.1 447110 R 228405 CDS YP_759183.1 114797368 4287299 448141..449040 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 449040 serB 4287299 serB Hyphomonas neptunium ATCC 15444 phosphoserine phosphatase SerB YP_759183.1 448141 D 228405 CDS YP_759184.1 114799399 4288521 449047..449517 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 449517 4288521 HNE_0454 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_759184.1 449047 D 228405 CDS YP_759185.1 114800403 4290347 complement(449505..450266) 1 NC_008358.1 identified by similarity to GB:AAL22149.1; match to protein family HMM PF06104; hypothetical protein 450266 4290347 HNE_0455 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759185.1 449505 R 228405 CDS YP_759186.1 114800491 4289444 complement(450516..451169) 1 NC_008358.1 identified by match to protein family HMM PF01066; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 451169 pgsA 4289444 pgsA Hyphomonas neptunium ATCC 15444 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_759186.1 450516 R 228405 CDS YP_759187.1 114799275 4288590 complement(451215..452753) 1 NC_008358.1 identified by similarity to GB:AAK22186.1; hypothetical protein 452753 4288590 HNE_0457 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759187.1 451215 R 228405 CDS YP_759188.1 114798549 4287393 complement(452796..454178) 1 NC_008358.1 identified by similarity to GB:AAK22186.1; hypothetical protein 454178 4287393 HNE_0458 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759188.1 452796 R 228405 CDS YP_759189.1 114798205 4287829 454360..455154 1 NC_008358.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 455154 thyA 4287829 thyA Hyphomonas neptunium ATCC 15444 thymidylate synthase YP_759189.1 454360 D 228405 CDS YP_759190.1 114799992 4290207 complement(455174..455680) 1 NC_008358.1 putative lipoprotein 455680 4290207 HNE_0460 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759190.1 455174 R 228405 CDS YP_759191.1 114798833 4287563 455843..456523 1 NC_008358.1 identified by similarity to GB:BAB53131.1; match to protein family HMM PF00230; match to protein family HMM TIGR00861; aquaporin Z 456523 aqpZ 4287563 aqpZ Hyphomonas neptunium ATCC 15444 aquaporin Z YP_759191.1 455843 D 228405 CDS YP_759192.1 114798079 4287859 complement(456652..457314) 1 NC_008358.1 hypothetical protein 457314 4287859 HNE_0462 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759192.1 456652 R 228405 CDS YP_759193.1 114797071 4287352 457456..457986 1 NC_008358.1 identified by similarity to SP:P04174; match to protein family HMM PF00186; dihydrofolate reductase 457986 folA 4287352 folA Hyphomonas neptunium ATCC 15444 dihydrofolate reductase YP_759193.1 457456 D 228405 CDS YP_759194.1 114799910 4290240 458078..458998 1 NC_008358.1 putative gluconolactonase 458998 4290240 HNE_0464 Hyphomonas neptunium ATCC 15444 putative gluconolactonase YP_759194.1 458078 D 228405 CDS YP_759195.1 114798476 4288759 complement(459047..459484) 1 NC_008358.1 identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP 459484 4288759 HNE_0465 Hyphomonas neptunium ATCC 15444 putative endoribonuclease L-PSP YP_759195.1 459047 R 228405 CDS YP_759196.1 114798371 4290428 complement(459625..460329) 1 NC_008358.1 hypothetical protein 460329 4290428 HNE_0466 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759196.1 459625 R 228405 CDS YP_759197.1 114799949 4290104 complement(460391..460543) 1 NC_008358.1 hypothetical protein 460543 4290104 HNE_0467 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759197.1 460391 R 228405 CDS YP_759198.1 114798080 4287860 complement(460693..461925) 1 NC_008358.1 identified by similarity to GB:BAC49007.1; hypothetical protein 461925 4287860 HNE_0468 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759198.1 460693 R 228405 CDS YP_759199.1 114799007 4288439 462082..463248 1 NC_008358.1 identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein 463248 hflK 4288439 hflK Hyphomonas neptunium ATCC 15444 HflK protein YP_759199.1 462082 D 228405 CDS YP_759200.1 114799745 4288029 463248..464144 1 NC_008358.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932; HflC protein 464144 hflC 4288029 hflC Hyphomonas neptunium ATCC 15444 HflC protein YP_759200.1 463248 D 228405 CDS YP_759201.1 114800434 4288176 464163..464363 1 NC_008358.1 hypothetical protein 464363 4288176 HNE_0471 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759201.1 464163 D 228405 CDS YP_759202.1 114799653 4290293 464464..465915 1 NC_008358.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease 465915 4290293 HNE_0472 Hyphomonas neptunium ATCC 15444 Do family protease YP_759202.1 464464 D 228405 CDS YP_759203.1 114800182 4290026 466173..467162 1 NC_008358.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; sodium/calcium exchanger 467162 4290026 HNE_0473 Hyphomonas neptunium ATCC 15444 sodium/calcium exchanger YP_759203.1 466173 D 228405 CDS YP_759204.1 114797330 4289408 467159..467911 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 467911 4289408 HNE_0474 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759204.1 467159 D 228405 CDS YP_759205.1 114799707 4289125 467922..468959 1 NC_008358.1 identified by similarity to SP:O50584; match to protein family HMM PF01212; threonine aldolase, low-specificity 468959 ltaE 4289125 ltaE Hyphomonas neptunium ATCC 15444 threonine aldolase, low-specificity YP_759205.1 467922 D 228405 CDS YP_759206.1 114797539 4287374 complement(468956..470011) 1 NC_008358.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase 470011 4287374 HNE_0476 Hyphomonas neptunium ATCC 15444 2-nitropropane dioxygenase YP_759206.1 468956 R 228405 CDS YP_759207.1 114798469 4287704 complement(470057..470674) 1 NC_008358.1 hypothetical protein 470674 4287704 HNE_0477 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759207.1 470057 R 228405 CDS YP_759208.1 114799068 4288967 470791..471078 1 NC_008358.1 hypothetical protein 471078 4288967 HNE_0478 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759208.1 470791 D 228405 CDS YP_759209.1 114797118 4287146 472229..473104 1 NC_008358.1 identified by match to protein family HMM PF03631; hypothetical protein 473104 4287146 HNE_0479 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759209.1 472229 D 228405 CDS YP_759210.1 114800083 4289966 complement(473062..473796) 1 NC_008358.1 identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 473796 4289966 HNE_0480 Hyphomonas neptunium ATCC 15444 N-acetylmuramoyl-L-alanine amidase YP_759210.1 473062 R 228405 CDS YP_759211.1 114798186 4288004 complement(473796..474698) 1 NC_008358.1 identified by similarity to GB:AAK24538.1; match to protein family HMM PF00892; hypothetical protein 474698 4288004 HNE_0481 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759211.1 473796 R 228405 CDS YP_759212.1 114798941 4289640 complement(474928..476103) 1 NC_008358.1 identified by match to protein family HMM PF00665; ISHne2, transposase 476103 4289640 HNE_0482 Hyphomonas neptunium ATCC 15444 ISHne2, transposase YP_759212.1 474928 R 228405 CDS YP_759213.1 114799100 4289199 complement(476262..477125) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 477125 4289199 HNE_0483 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase superfamily protein YP_759213.1 476262 R 228405 CDS YP_759214.1 114799801 4289818 477270..478064 1 NC_008358.1 identified by match to protein family HMM PF01925; hypothetical protein 478064 4289818 HNE_0484 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759214.1 477270 D 228405 CDS YP_759215.1 114799227 4288290 478189..478908 1 NC_008358.1 identified by similarity to GB:CAE39528.1; hypothetical protein 478908 4288290 HNE_0485 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759215.1 478189 D 228405 CDS YP_759216.1 114800446 4288188 478908..479534 1 NC_008358.1 UbiE/COQ5 family methlytransferase 479534 4288188 HNE_0486 Hyphomonas neptunium ATCC 15444 UbiE/COQ5 family methlytransferase YP_759216.1 478908 D 228405 CDS YP_759217.1 114797122 4287150 479548..480375 1 NC_008358.1 identified by similarity to GB:BAC90287.1; hypothetical protein 480375 4287150 HNE_0487 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759217.1 479548 D 228405 CDS YP_759218.1 114799058 4288957 480406..480843 1 NC_008358.1 identified by similarity to PIR:AG3273; match to protein family HMM PF04543; hypothetical protein 480843 4288957 HNE_0488 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759218.1 480406 D 228405 CDS YP_759219.1 114800118 4290451 complement(480847..481587) 1 NC_008358.1 identified by similarity to GB:CAD31353.1; hypothetical protein 481587 4290451 HNE_0489 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759219.1 480847 R 228405 CDS YP_759220.1 114800219 4288993 complement(481670..482200) 1 NC_008358.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase 482200 4288993 HNE_0490 Hyphomonas neptunium ATCC 15444 D,D-heptose 1,7-bisphosphate phosphatase YP_759220.1 481670 R 228405 CDS YP_759221.1 114797598 4288310 482786..484963 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; signalling protein N terminal repeat/GGDEF/EAL domain-containing protein 484963 4288310 HNE_0491 Hyphomonas neptunium ATCC 15444 signalling protein N terminal repeat/GGDEF/EAL domain-containing protein YP_759221.1 482786 D 228405 CDS YP_759222.1 114797216 4289933 complement(484964..486217) 1 NC_008358.1 identified by similarity to SP:P02981; match to protein family HMM PF00083; match to protein family HMM PF07690; tetracycline-efflux transporter 486217 tetA 4289933 tetA Hyphomonas neptunium ATCC 15444 tetracycline-efflux transporter YP_759222.1 484964 R 228405 CDS YP_759223.1 114798571 4289501 486216..486755 1 NC_008358.1 hypothetical protein 486755 4289501 HNE_0493 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759223.1 486216 D 228405 CDS YP_759224.1 114799118 4289913 complement(486801..487982) 1 NC_008358.1 identified by similarity to GB:AAK24045.1; hypothetical protein 487982 4289913 HNE_0494 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759224.1 486801 R 228405 CDS YP_759225.1 114798566 4287410 488069..488917 1 NC_008358.1 putative lipoprotein 488917 4287410 HNE_0495 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759225.1 488069 D 228405 CDS YP_759226.1 114799342 4290176 488979..489731 1 NC_008358.1 identified by similarity to GB:BAC53108.1; hypothetical protein 489731 4290176 HNE_0496 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759226.1 488979 D 228405 CDS YP_759227.1 114800545 4288890 complement(489735..490061) 1 NC_008358.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 490061 4288890 HNE_0497 Hyphomonas neptunium ATCC 15444 antibiotic biosynthesis monooxygenase domain-containing protein YP_759227.1 489735 R 228405 CDS YP_759228.1 114797138 4288355 complement(490185..491069) 1 NC_008358.1 identified by similarity to GB:AAK23436.1; match to protein family HMM PF00004; match to protein family HMM PF07728; hypothetical protein 491069 4288355 HNE_0498 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759228.1 490185 R 228405 CDS YP_759229.1 114798111 4289606 491437..491817 1 NC_008358.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 491817 flbT 4289606 flbT Hyphomonas neptunium ATCC 15444 flagellar biosynthesis repressor FlbT YP_759229.1 491437 D 228405 CDS YP_759230.1 114799035 4290513 491817..492128 1 NC_008358.1 identified by similarity to GB:AAD39949.1; hypothetical protein 492128 4290513 HNE_0500 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759230.1 491817 D 228405 CDS YP_759231.1 114800047 4289370 492138..492788 1 NC_008358.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 492788 4289370 HNE_0501 Hyphomonas neptunium ATCC 15444 MarC membrane protein YP_759231.1 492138 D 228405 CDS YP_759232.1 114800261 4287496 complement(492795..494309) 1 NC_008358.1 hypothetical protein 494309 4287496 HNE_0502 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759232.1 492795 R 228405 CDS YP_759233.1 114799932 4290086 494368..494835 1 NC_008358.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding protein DksA 494835 dksA 4290086 dksA Hyphomonas neptunium ATCC 15444 RNA polymerase-binding protein DksA YP_759233.1 494368 D 228405 CDS YP_759234.1 114798089 4288237 495235..496212 1 NC_008358.1 SPOA domain-containing protein 496212 4288237 HNE_0504 Hyphomonas neptunium ATCC 15444 SPOA domain-containing protein YP_759234.1 495235 D 228405 CDS YP_759235.1 114798720 4290448 complement(496190..496858) 1 NC_008358.1 identified by match to protein family HMM PF04264; hypothetical protein 496858 4290448 HNE_0505 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759235.1 496190 R 228405 CDS YP_759236.1 114797439 4287176 complement(496831..498690) 1 NC_008358.1 identified by match to protein family HMM PF05960; putative lipoprotein 498690 4287176 HNE_0506 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759236.1 496831 R 228405 CDS YP_759237.1 114799972 4290187 498883..501486 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; putative sensor histidine kinase/response regulator CckA 501486 4290187 HNE_0507 Hyphomonas neptunium ATCC 15444 putative sensor histidine kinase/response regulator CckA YP_759237.1 498883 D 228405 CDS YP_759238.1 114800307 4287952 complement(501510..502247) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 502247 4287952 HNE_0508 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_759238.1 501510 R 228405 CDS YP_759239.1 114797274 4290538 complement(502252..503148) 1 NC_008358.1 identified by match to protein family HMM PF03767; 5'-nucleotidase 503148 4290538 HNE_0509 Hyphomonas neptunium ATCC 15444 5'-nucleotidase YP_759239.1 502252 R 228405 CDS YP_759240.1 114800375 4288738 503356..504333 1 NC_008358.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase 504333 4288738 HNE_0510 Hyphomonas neptunium ATCC 15444 2-nitropropane dioxygenase YP_759240.1 503356 D 228405 CDS YP_759241.1 114799682 4288704 504464..505801 1 NC_008358.1 identified by match to protein family HMM PF02646; RmuC domain-containing protein 505801 4288704 HNE_0511 Hyphomonas neptunium ATCC 15444 RmuC domain-containing protein YP_759241.1 504464 D 228405 CDS YP_759242.1 114800420 4290364 505844..506374 1 NC_008358.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 506374 def 4290364 def Hyphomonas neptunium ATCC 15444 peptide deformylase YP_759242.1 505844 D 228405 CDS YP_759243.1 114799265 4288580 506427..507386 1 NC_008358.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 507386 fmt 4288580 fmt Hyphomonas neptunium ATCC 15444 methionyl-tRNA formyltransferase YP_759243.1 506427 D 228405 CDS YP_759244.1 114798503 4287756 507386..507874 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 507874 4287756 HNE_0514 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759244.1 507386 D 228405 CDS YP_759245.1 114798579 4289509 507919..508662 1 NC_008358.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 508662 truA 4289509 truA Hyphomonas neptunium ATCC 15444 tRNA pseudouridine synthase A YP_759245.1 507919 D 228405 CDS YP_759246.1 114800028 4288820 508735..509970 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 509970 4288820 HNE_0516 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_759246.1 508735 D 228405 CDS YP_759247.1 114799247 4289677 509988..510356 1 NC_008358.1 identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118; hypothetical protein 510356 4289677 HNE_0517 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759247.1 509988 D 228405 CDS YP_759248.1 114797974 4288337 510405..513248 1 NC_008358.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 513248 glnD 4288337 glnD Hyphomonas neptunium ATCC 15444 PII uridylyl-transferase YP_759248.1 510405 D 228405 CDS YP_759249.1 114797264 4288462 513272..514828 1 NC_008358.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 514828 mviN 4288462 mviN Hyphomonas neptunium ATCC 15444 integral membrane protein MviN YP_759249.1 513272 D 228405 CDS YP_759250.1 114800520 4288865 514854..515888 1 NC_008358.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 515888 trpS 4288865 trpS Hyphomonas neptunium ATCC 15444 tryptophanyl-tRNA synthetase YP_759250.1 514854 D 228405 CDS YP_759251.1 114799560 4288545 516245..517321 1 NC_008358.1 hypothetical protein 517321 4288545 HNE_0521 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759251.1 516245 D 228405 CDS YP_759252.1 114799747 4288031 517373..517951 1 NC_008358.1 identified by match to protein family HMM PF01106; NifU domain-containing protein 517951 4288031 HNE_0522 Hyphomonas neptunium ATCC 15444 NifU domain-containing protein YP_759252.1 517373 D 228405 CDS YP_759253.1 114798999 4288431 518090..518689 1 NC_008358.1 identified by match to protein family HMM PF00881; hypothetical protein 518689 4288431 HNE_0523 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759253.1 518090 D 228405 CDS YP_759254.1 114798173 4287662 518699..519343 1 NC_008358.1 identified by match to protein family HMM PF00814; family M22 nonpeptidase-like protein 519343 4287662 HNE_0524 Hyphomonas neptunium ATCC 15444 family M22 nonpeptidase-like protein YP_759254.1 518699 D 228405 CDS YP_759255.1 114797312 4287517 complement(519340..520653) 1 NC_008358.1 identified by similarity to SP:P36928; HSP70 family protein 520653 4287517 HNE_0525 Hyphomonas neptunium ATCC 15444 HSP70 family protein YP_759255.1 519340 R 228405 CDS YP_759256.1 114799873 4287456 520764..521219 1 NC_008358.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 521219 rimI 4287456 rimI Hyphomonas neptunium ATCC 15444 ribosomal-protein-alanine acetyltransferase YP_759256.1 520764 D 228405 CDS YP_759257.1 114798860 4289716 521295..522191 1 NC_008358.1 identified by match to protein family HMM PF01738; dienelactone hydrolase family protein 522191 4289716 HNE_0527 Hyphomonas neptunium ATCC 15444 dienelactone hydrolase family protein YP_759257.1 521295 D 228405 CDS YP_759258.1 114798658 4290404 522238..522657 1 NC_008358.1 identified by similarity to GB:AAC32180.1; match to protein family HMM PF01475; ferric uptake regulation protein 522657 fur 4290404 fur Hyphomonas neptunium ATCC 15444 ferric uptake regulation protein YP_759258.1 522238 D 228405 CDS YP_759259.1 114797720 4289235 complement(522750..523910) 1 NC_008358.1 identified by similarity to GB:CAE33394.1; match to protein family HMM PF07995; glucose/sorbosone family dehydrogenase 523910 4289235 HNE_0529 Hyphomonas neptunium ATCC 15444 glucose/sorbosone family dehydrogenase YP_759259.1 522750 R 228405 CDS YP_759260.1 114800264 4287499 complement(524048..527032) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 527032 4287499 HNE_0530 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_759260.1 524048 R 228405 CDS YP_759261.1 114799592 4289088 527263..527982 1 NC_008358.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 527982 exsB 4289088 exsB Hyphomonas neptunium ATCC 15444 exsB protein YP_759261.1 527263 D 228405 CDS YP_759262.1 114798300 4289464 527979..528626 1 NC_008358.1 identified by similarity to GB:AAW61285.1; hypothetical protein 528626 4289464 HNE_0532 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759262.1 527979 D 228405 CDS YP_759263.1 114797313 4287518 528581..529021 1 NC_008358.1 identified by match to protein family HMM PF01242; putative 6-pyruvoyl tetrahydropterin synthase 529021 4287518 HNE_0533 Hyphomonas neptunium ATCC 15444 putative 6-pyruvoyl tetrahydropterin synthase YP_759263.1 528581 D 228405 CDS YP_759264.1 114797807 4288071 529082..530533 1 NC_008358.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 530533 4288071 HNE_0534 Hyphomonas neptunium ATCC 15444 small conductance mechanosensitive ion channel (MscS) family protein YP_759264.1 529082 D 228405 CDS YP_759265.1 114798939 4289638 complement(530592..531059) 1 NC_008358.1 hypothetical protein 531059 4289638 HNE_0535 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759265.1 530592 R 228405 CDS YP_759266.1 114799514 4288907 complement(531165..531860) 1 NC_008358.1 identified by similarity to GB:CAE26354.1; match to protein family HMM PF02678; hypothetical protein 531860 4288907 HNE_0536 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759266.1 531165 R 228405 CDS YP_759267.1 114798752 4287987 531985..532743 1 NC_008358.1 hypothetical protein 532743 4287987 HNE_0537 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759267.1 531985 D 228405 CDS YP_759268.1 114797579 4286984 complement(532986..533891) 1 NC_008358.1 identified by match to protein family HMM PF00665; ISHne1, transposase orfB 533891 4286984 HNE_0538 Hyphomonas neptunium ATCC 15444 ISHne1, transposase orfB YP_759268.1 532986 R 228405 CDS YP_759269.1 114799153 4287005 complement(533888..534220) 1 NC_008358.1 identified by match to protein family HMM PF01527; ISHne1, transposase orfA 534220 4287005 HNE_0539 Hyphomonas neptunium ATCC 15444 ISHne1, transposase orfA YP_759269.1 533888 R 228405 CDS YP_759270.1 114798402 4289743 complement(534233..535009) 1 NC_008358.1 identified by match to protein family HMM PF07751; Abi-like family protein 535009 4289743 HNE_0540 Hyphomonas neptunium ATCC 15444 Abi-like family protein YP_759270.1 534233 R 228405 CDS YP_759271.1 114797654 4288132 535327..537174 1 NC_008358.1 identified by similarity to GB:AAA24517.1; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 537174 recQ 4288132 recQ Hyphomonas neptunium ATCC 15444 ATP-dependent DNA helicase RecQ YP_759271.1 535327 D 228405 CDS YP_759272.1 114799921 4290251 537385..537987 1 NC_008358.1 identified by match to protein family HMM PF00574; putative ATP-dependent Clp protease, proteolytic subunit ClpP 537987 4290251 HNE_0542 Hyphomonas neptunium ATCC 15444 putative ATP-dependent Clp protease, proteolytic subunit ClpP YP_759272.1 537385 D 228405 CDS YP_759273.1 114799174 4288391 538066..539697 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 539697 4288391 HNE_0543 Hyphomonas neptunium ATCC 15444 sensor histidine kinase/response regulator YP_759273.1 538066 D 228405 CDS YP_759274.1 114798540 4288105 complement(539707..541944) 1 NC_008358.1 identified by match to protein family HMM PF01734; patatin family phospholipase 541944 4288105 HNE_0544 Hyphomonas neptunium ATCC 15444 patatin family phospholipase YP_759274.1 539707 R 228405 CDS YP_759275.1 114799066 4288965 complement(542135..543265) 1 NC_008358.1 identified by match to protein family HMM PF01266; FAD-binding oxidoreductase 543265 4288965 HNE_0546 Hyphomonas neptunium ATCC 15444 FAD-binding oxidoreductase YP_759275.1 542135 R 228405 CDS YP_759276.1 114800057 4289380 543314..544078 1 NC_008358.1 hypothetical protein 544078 4289380 HNE_0547 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759276.1 543314 D 228405 CDS YP_759277.1 114797052 4287020 complement(544084..545055) 1 NC_008358.1 identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 545055 trxB 4287020 trxB Hyphomonas neptunium ATCC 15444 thioredoxin-disulfide reductase YP_759277.1 544084 R 228405 CDS YP_759278.1 114798820 4287550 complement(545163..546086) 1 NC_008358.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter 546086 4287550 HNE_0549 Hyphomonas neptunium ATCC 15444 cation diffusion facilitator family transporter YP_759278.1 545163 R 228405 CDS YP_759279.1 114799840 4290148 complement(546605..547153) 1 NC_008358.1 hypothetical protein 547153 4290148 HNE_0550 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759279.1 546605 R 228405 CDS YP_759280.1 114800397 4290341 complement(547543..547725) 1 NC_008358.1 identified by similarity to GB:BAB47714.1; hypothetical protein 547725 4290341 HNE_0551 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759280.1 547543 R 228405 CDS YP_759281.1 114797774 4289618 complement(547859..550303) 1 NC_008358.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 550303 gyrB 4289618 gyrB Hyphomonas neptunium ATCC 15444 DNA gyrase subunit B YP_759281.1 547859 R 228405 CDS YP_759282.1 114799571 4288556 complement(550478..552604) 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 552604 4288556 HNE_0553 Hyphomonas neptunium ATCC 15444 DEAD/DEAH box helicase YP_759282.1 550478 R 228405 CDS YP_759283.1 114800144 4290477 552736..554088 1 NC_008358.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 554088 hemN 4290477 hemN Hyphomonas neptunium ATCC 15444 coproporphyrinogen III oxidase YP_759283.1 552736 D 228405 CDS YP_759284.1 114800056 4289379 complement(554085..554927) 1 NC_008358.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 554927 fghA 4289379 fghA Hyphomonas neptunium ATCC 15444 S-formylglutathione hydrolase YP_759284.1 554085 R 228405 CDS YP_759285.1 114797153 4287612 complement(555670..556035) 1 NC_008358.1 hypothetical protein 556035 4287612 HNE_0556 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759285.1 555670 R 228405 CDS YP_759286.1 114798490 4288773 complement(556176..556466) 1 NC_008358.1 hypothetical protein 556466 4288773 HNE_0557 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759286.1 556176 R 228405 CDS YP_759287.1 114799046 4290524 complement(556489..556866) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 556866 4290524 HNE_0558 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_759287.1 556489 R 228405 CDS YP_759288.1 114797548 4287383 complement(556898..557365) 1 NC_008358.1 identified by similarity to GB:CAC46585.1; match to protein family HMM PF04828; hypothetical protein 557365 4287383 HNE_0559 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759288.1 556898 R 228405 CDS YP_759289.1 114798551 4287395 complement(557365..558471) 1 NC_008358.1 identified by similarity to SP:P45382; match to protein family HMM PF00107; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase, class III 558471 4287395 HNE_0560 Hyphomonas neptunium ATCC 15444 S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase, class III YP_759289.1 557365 R 228405 CDS YP_759290.1 114798067 4287847 complement(558540..559652) 1 NC_008358.1 identified by similarity to GB:AAB51449.1; match to protein family HMM TIGR00611; DNA replication and repair protein RecF 559652 recF 4287847 recF Hyphomonas neptunium ATCC 15444 DNA replication and repair protein RecF YP_759290.1 558540 R 228405 CDS YP_759291.1 114800522 4288867 complement(559659..559961) 1 NC_008358.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 559961 4288867 HNE_0562 Hyphomonas neptunium ATCC 15444 antibiotic biosynthesis monooxygenase domain-containing protein YP_759291.1 559659 R 228405 CDS YP_759292.1 114798873 4289729 complement(560058..561179) 1 NC_008358.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 561179 dnaN 4289729 dnaN Hyphomonas neptunium ATCC 15444 DNA polymerase III subunit beta YP_759292.1 560058 R 228405 CDS YP_759293.1 114799907 4290237 complement(561363..562736) 1 NC_008358.1 identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 562736 dnaA 4290237 dnaA Hyphomonas neptunium ATCC 15444 chromosomal replication initiator protein DnaA YP_759293.1 561363 R 228405 CDS YP_759294.1 114800507 4288852 complement(563369..563632) 1 NC_008358.1 identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029; 30S ribosomal protein S20 563632 rpsT 4288852 rpsT Hyphomonas neptunium ATCC 15444 30S ribosomal protein S20 YP_759294.1 563369 R 228405 CDS YP_759295.1 114799523 4288916 complement(563750..564532) 1 NC_008358.1 identified by similarity to SP:P14604; match to protein family HMM PF00378; enoyl-CoA hydratase 564532 4288916 HNE_0566 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_759295.1 563750 R 228405 CDS YP_759296.1 114798029 4287184 564778..566142 1 NC_008358.1 identified by match to protein family HMM PF03109; ABC1 family protein 566142 4287184 HNE_0567 Hyphomonas neptunium ATCC 15444 ABC1 family protein YP_759296.1 564778 D 228405 CDS YP_759297.1 114797063 4287031 566139..566831 1 NC_008358.1 identified by match to protein family HMM PF01569; PAP2 (2 phosphatidic acid phosphatase) family protein 566831 4287031 HNE_0568 Hyphomonas neptunium ATCC 15444 PAP2 (2 phosphatidic acid phosphatase) family protein YP_759297.1 566139 D 228405 CDS YP_759298.1 114799092 4289191 complement(566839..568113) 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 568113 4289191 HNE_0569 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_759298.1 566839 R 228405 CDS YP_759299.1 114798069 4287849 568276..568896 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 568896 4287849 HNE_0570 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_759299.1 568276 D 228405 CDS YP_759300.1 114798556 4287400 568893..569069 1 NC_008358.1 identified by match to protein family HMM PF00301; rubredoxin 569069 4287400 HNE_0571 Hyphomonas neptunium ATCC 15444 rubredoxin YP_759300.1 568893 D 228405 CDS YP_759301.1 114797591 4286996 complement(569066..569770) 1 NC_008358.1 hypothetical protein 569770 4286996 HNE_0572 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759301.1 569066 R 228405 CDS YP_759302.1 114797100 4287967 569925..570395 1 NC_008358.1 identified by match to protein family HMM PF03061; thioesterase family protein 570395 4287967 HNE_0573 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_759302.1 569925 D 228405 CDS YP_759303.1 114800512 4288857 complement(570422..571474) 1 NC_008358.1 identified by match to protein family HMM PF03741; TerC family membrane protein 571474 4288857 HNE_0574 Hyphomonas neptunium ATCC 15444 TerC family membrane protein YP_759303.1 570422 R 228405 CDS YP_759304.1 114798890 4287581 complement(571624..573051) 1 NC_008358.1 identified by similarity to SP:P17551; match to protein family HMM PF02417; match to protein family HMM TIGR00937; putative chromate ion transporter 573051 4287581 HNE_0575 Hyphomonas neptunium ATCC 15444 putative chromate ion transporter YP_759304.1 571624 R 228405 CDS YP_759305.1 114800093 4289976 complement(573051..573185) 1 NC_008358.1 hypothetical protein 573185 4289976 HNE_0576 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759305.1 573051 R 228405 CDS YP_759306.1 114797537 4287372 573266..574759 1 NC_008358.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 574759 hisS 4287372 hisS Hyphomonas neptunium ATCC 15444 histidyl-tRNA synthetase YP_759306.1 573266 D 228405 CDS YP_759307.1 114798501 4287754 574756..575877 1 NC_008358.1 identified by match to protein family HMM PF00587; tRNA synthetase class II core domain-containing protein 575877 4287754 HNE_0578 Hyphomonas neptunium ATCC 15444 tRNA synthetase class II core domain-containing protein YP_759307.1 574756 D 228405 CDS YP_759308.1 114800289 4287934 575874..576584 1 NC_008358.1 identified by match to protein family HMM PF01634; ATP phosphoribosyltransferase 576584 hisG 4287934 hisG Hyphomonas neptunium ATCC 15444 ATP phosphoribosyltransferase YP_759308.1 575874 D 228405 CDS YP_759309.1 114797121 4287149 576992..578179 1 NC_008358.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine/succinylornithine aminotransferase 578179 argD 4287149 argD Hyphomonas neptunium ATCC 15444 acetylornithine/succinylornithine aminotransferase YP_759309.1 576992 D 228405 CDS YP_759310.1 114798085 4288233 578286..578852 1 NC_008358.1 identified by similarity to GB:AAU48428.1; hypothetical protein 578852 4288233 HNE_0581 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759310.1 578286 D 228405 CDS YP_759311.1 114799870 4287452 579106..581736 1 NC_008358.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 581736 4287452 HNE_0582 Hyphomonas neptunium ATCC 15444 LuxR family transcriptional regulator YP_759311.1 579106 D 228405 CDS YP_759312.1 114797730 4289245 complement(581737..582927) 1 NC_008358.1 identified by match to protein family HMM PF03583; lipase family protein 582927 4289245 HNE_0583 Hyphomonas neptunium ATCC 15444 lipase family protein YP_759312.1 581737 R 228405 CDS YP_759313.1 114799001 4288433 583062..583898 1 NC_008358.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 583898 4288433 HNE_0584 Hyphomonas neptunium ATCC 15444 carbon-nitrogen family hydrolase YP_759313.1 583062 D 228405 CDS YP_759314.1 114798216 4287840 complement(583902..585032) 1 NC_008358.1 identified by match to protein family HMM PF00278; putative carboxynorspermidine decarboxylase 585032 4287840 HNE_0585 Hyphomonas neptunium ATCC 15444 putative carboxynorspermidine decarboxylase YP_759314.1 583902 R 228405 CDS YP_759315.1 114797397 4287093 complement(585022..585276) 1 NC_008358.1 hypothetical protein 585276 4287093 HNE_0586 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759315.1 585022 R 228405 CDS YP_759316.1 114798783 4287765 585050..585310 1 NC_008358.1 hypothetical protein 585310 4287765 HNE_0587 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759316.1 585050 D 228405 CDS YP_759317.1 114799287 4289012 complement(585280..586494) 1 NC_008358.1 identified by match to protein family HMM PF03435; saccharopine dehydrogenase 586494 lys1 4289012 lys1 Hyphomonas neptunium ATCC 15444 saccharopine dehydrogenase YP_759317.1 585280 R 228405 CDS YP_759318.1 114797719 4289234 586633..586953 1 NC_008358.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 586953 4289234 HNE_0589 Hyphomonas neptunium ATCC 15444 antibiotic biosynthesis monooxygenase domain-containing protein YP_759318.1 586633 D 228405 CDS YP_759319.1 114799857 4287439 complement(586970..587350) 1 NC_008358.1 hypothetical protein 587350 4287439 HNE_0590 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759319.1 586970 R 228405 CDS YP_759320.1 114798816 4289166 587684..587938 1 NC_008358.1 identified by similarity to GB:CAC45198.1; match to protein family HMM PF04226; hypothetical protein 587938 4289166 HNE_0591 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759320.1 587684 D 228405 CDS YP_759321.1 114799893 4290222 588075..589001 1 NC_008358.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 589001 argF 4290222 argF Hyphomonas neptunium ATCC 15444 ornithine carbamoyltransferase YP_759321.1 588075 D 228405 CDS YP_759322.1 114798903 4288489 589080..590015 1 NC_008358.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 590015 4288489 HNE_0593 Hyphomonas neptunium ATCC 15444 radical SAM domain-containing protein YP_759322.1 589080 D 228405 CDS YP_759323.1 114798444 4290306 590148..591074 1 NC_008358.1 identified by similarity to SP:P45803; match to protein family HMM PF01430; chaperonin HslO 591074 hslO 4290306 hslO Hyphomonas neptunium ATCC 15444 chaperonin HslO YP_759323.1 590148 D 228405 CDS YP_759324.1 114799221 4289590 complement(591217..592101) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein 592101 4289590 HNE_0595 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family protein YP_759324.1 591217 R 228405 CDS YP_759325.1 114800372 4288735 complement(592202..592615) 1 NC_008358.1 identified by similarity to GB:CAE26245.1; hypothetical protein 592615 4288735 HNE_0596 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759325.1 592202 R 228405 CDS YP_759326.1 114797606 4288318 complement(592674..593507) 1 NC_008358.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 593507 4288318 HNE_0597 Hyphomonas neptunium ATCC 15444 mechanosensitive ion channel family protein YP_759326.1 592674 R 228405 CDS YP_759327.1 114799133 4287787 complement(593606..594772) 1 NC_008358.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 594772 4287787 HNE_0598 Hyphomonas neptunium ATCC 15444 small conductance mechanosensitive ion channel (MscS) family protein YP_759327.1 593606 R 228405 CDS YP_759328.1 114800088 4289971 complement(594769..595527) 1 NC_008358.1 identified by similarity to GB:AAS82400.1; hypothetical protein 595527 4289971 HNE_0599 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759328.1 594769 R 228405 CDS YP_759329.1 114797062 4287030 complement(595591..596811) 1 NC_008358.1 identified by match to protein family HMM PF00089; trypsin domain-containing protein 596811 4287030 HNE_0600 Hyphomonas neptunium ATCC 15444 trypsin domain-containing protein YP_759329.1 595591 R 228405 CDS YP_759330.1 114798119 4289614 596981..598465 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 598465 4289614 HNE_0601 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_759330.1 596981 D 228405 CDS YP_759331.1 114797574 4287292 599373..600065 1 NC_008358.1 hypothetical protein 600065 4287292 HNE_0602 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759331.1 599373 D 228405 CDS YP_759332.1 114798615 4289874 complement(600461..601138) 1 NC_008358.1 hypothetical protein 601138 4289874 HNE_0603 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759332.1 600461 R 228405 CDS YP_759333.1 114797507 4287636 601239..603866 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 603866 4287636 HNE_0604 Hyphomonas neptunium ATCC 15444 DEAD/DEAH box helicase YP_759333.1 601239 D 228405 CDS YP_759334.1 114798456 4287691 complement(603863..604996) 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 604996 4287691 HNE_0605 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_759334.1 603863 R 228405 CDS YP_759335.1 114799666 4288688 complement(604993..606039) 1 NC_008358.1 identified by similarity to GB:AAK22190.1; hypothetical protein 606039 4288688 HNE_0606 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759335.1 604993 R 228405 CDS YP_759336.1 114800458 4288200 606239..606859 1 NC_008358.1 hypothetical protein 606859 4288200 HNE_0607 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759336.1 606239 D 228405 CDS YP_759337.1 114797209 4289926 606923..607657 1 NC_008358.1 hypothetical protein 607657 4289926 HNE_0608 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759337.1 606923 D 228405 CDS YP_759338.1 114797937 4287911 607715..609097 1 NC_008358.1 identified by similarity to GB:BAC46414.1; hypothetical protein 609097 4287911 HNE_0609 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759338.1 607715 D 228405 CDS YP_759339.1 114799127 4289922 609200..610462 1 NC_008358.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; sulfate permease 610462 4289922 HNE_0610 Hyphomonas neptunium ATCC 15444 sulfate permease YP_759339.1 609200 D 228405 CDS YP_759340.1 114799918 4290248 610523..611140 1 NC_008358.1 identified by match to protein family HMM PF00717; S24 family peptidase 611140 4290248 HNE_0611 Hyphomonas neptunium ATCC 15444 S24 family peptidase YP_759340.1 610523 D 228405 CDS YP_759341.1 114799157 4287009 complement(611150..611680) 1 NC_008358.1 hypothetical protein 611680 4287009 HNE_0612 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759341.1 611150 R 228405 CDS YP_759342.1 114797799 4288063 611834..613318 1 NC_008358.1 identified by match to protein family HMM PF00282; decarboxylase, group II 613318 4288063 HNE_0613 Hyphomonas neptunium ATCC 15444 decarboxylase, group II YP_759342.1 611834 D 228405 CDS YP_759343.1 114799971 4290185 complement(613299..614792) 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein 614792 4290185 HNE_0614 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759343.1 613299 R 228405 CDS YP_759344.1 114798723 4289286 614791..616302 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator transporter 616302 4289286 HNE_0615 Hyphomonas neptunium ATCC 15444 major facilitator transporter YP_759344.1 614791 D 228405 CDS YP_759345.1 114798906 4288492 complement(616321..616932) 1 NC_008358.1 identified by similarity to GB:CAG19473.1; match to protein family HMM PF06041; hypothetical protein 616932 4288492 HNE_0616 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759345.1 616321 R 228405 CDS YP_759346.1 114799822 4290130 complement(616929..617705) 1 NC_008358.1 identified by match to protein family HMM TIGR01983; ubiquinone biosynthesis O-methyltransferase 617705 ubiG 4290130 ubiG Hyphomonas neptunium ATCC 15444 ubiquinone biosynthesis O-methyltransferase YP_759346.1 616929 R 228405 CDS YP_759347.1 114798362 4290419 617800..619047 1 NC_008358.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 619047 4290419 HNE_0618 Hyphomonas neptunium ATCC 15444 aspartate kinase YP_759347.1 617800 D 228405 CDS YP_759348.1 114798877 4289733 619072..621339 1 NC_008358.1 identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase PtsP 621339 ptsP 4289733 ptsP Hyphomonas neptunium ATCC 15444 phosphoenolpyruvate-protein phosphotransferase PtsP YP_759348.1 619072 D 228405 CDS YP_759349.1 114799427 4289331 621439..622413 1 NC_008358.1 hypothetical protein 622413 4289331 HNE_0620 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759349.1 621439 D 228405 CDS YP_759350.1 114797345 4287199 622497..623639 1 NC_008358.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 623639 ispG 4287199 ispG Hyphomonas neptunium ATCC 15444 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_759350.1 622497 D 228405 CDS YP_759351.1 114800367 4288730 complement(623649..624182) 1 NC_008358.1 identified by similarity to PIR:B69520; hypothetical protein 624182 4288730 HNE_0622 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759351.1 623649 R 228405 CDS YP_759352.1 114798013 4290069 complement(624182..624784) 1 NC_008358.1 identified by similarity to PIR:C69520; hypothetical protein 624784 4290069 HNE_0623 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759352.1 624182 R 228405 CDS YP_759353.1 114799691 4288713 624799..626178 1 NC_008358.1 acetyl xylan esterase domain-containing protein 626178 4288713 HNE_0624 Hyphomonas neptunium ATCC 15444 acetyl xylan esterase domain-containing protein YP_759353.1 624799 D 228405 CDS YP_759354.1 114798918 4287862 626217..626648 1 NC_008358.1 identified by similarity to PIR:AI2479; hypothetical protein 626648 4287862 HNE_0625 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759354.1 626217 D 228405 CDS YP_759355.1 114797902 4288090 626715..627773 1 NC_008358.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 627773 prfA 4288090 prfA Hyphomonas neptunium ATCC 15444 peptide chain release factor 1 YP_759355.1 626715 D 228405 CDS YP_759356.1 114800266 4287501 627770..628588 1 NC_008358.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein 628588 4287501 HNE_0627 Hyphomonas neptunium ATCC 15444 MOSC domain-containing protein YP_759356.1 627770 D 228405 CDS YP_759357.1 114799445 4289661 628588..629472 1 NC_008358.1 putative lipoprotein 629472 4289661 HNE_0628 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759357.1 628588 D 228405 CDS YP_759358.1 114798227 4288608 629469..630326 1 NC_008358.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase 630326 4288608 HNE_0629 Hyphomonas neptunium ATCC 15444 HemK family methyltransferase YP_759358.1 629469 D 228405 CDS YP_759359.1 114797461 4288406 630546..631325 1 NC_008358.1 identified by similarity to GB:BAB50321.1; hypothetical protein 631325 4288406 HNE_0630 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759359.1 630546 D 228405 CDS YP_759360.1 114799774 4289791 631509..634127 1 NC_008358.1 identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent chaperone protein ClpB 634127 clpB 4289791 clpB Hyphomonas neptunium ATCC 15444 ATP-dependent chaperone protein ClpB YP_759360.1 631509 D 228405 CDS YP_759361.1 114797465 4288410 complement(634174..635544) 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 635544 4288410 HNE_0632 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_759361.1 634174 R 228405 CDS YP_759362.1 114799770 4288054 complement(635690..637066) 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 637066 4288054 HNE_0633 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_759362.1 635690 R 228405 CDS YP_759363.1 114798661 4290407 637241..640570 1 NC_008358.1 identified by similarity to GB:AAK25513.1; hypothetical protein 640570 4290407 HNE_0634 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759363.1 637241 D 228405 CDS YP_759364.1 114799667 4288689 640660..640851 1 NC_008358.1 identified by similarity to GB:AAN55110.1; putative lipoprotein 640851 4288689 HNE_0635 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759364.1 640660 D 228405 CDS YP_759365.1 114800201 4288975 640879..641229 1 NC_008358.1 identified by similarity to SP:P76076; hypothetical protein 641229 4288975 HNE_0636 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759365.1 640879 D 228405 CDS YP_759366.1 114797645 4289039 641355..641597 1 NC_008358.1 hypothetical protein 641597 4289039 HNE_0637 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759366.1 641355 D 228405 CDS YP_759367.1 114797307 4287512 641708..642355 1 NC_008358.1 identified by similarity to GB:BAB49848.1; hypothetical protein 642355 4287512 HNE_0638 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759367.1 641708 D 228405 CDS YP_759368.1 114799911 4290241 642444..642809 1 NC_008358.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072; chemotaxis protein CheY 642809 cheY 4290241 cheY Hyphomonas neptunium ATCC 15444 chemotaxis protein CheY YP_759368.1 642444 D 228405 CDS YP_759369.1 114797580 4286985 642879..643715 1 NC_008358.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 643715 cheR 4286985 cheR Hyphomonas neptunium ATCC 15444 chemotaxis protein methyltransferase YP_759369.1 642879 D 228405 CDS YP_759370.1 114798727 4289290 643812..644996 1 NC_008358.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 644996 trmU 4289290 trmU Hyphomonas neptunium ATCC 15444 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_759370.1 643812 D 228405 CDS YP_759371.1 114799325 4290159 complement(645005..646069) 1 NC_008358.1 identified by similarity to GB:AAK24813.1; match to protein family HMM PF06258; hypothetical protein 646069 4290159 HNE_0642 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759371.1 645005 R 228405 CDS YP_759372.1 114799104 4289203 complement(646081..646554) 1 NC_008358.1 identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 646554 greA 4289203 greA Hyphomonas neptunium ATCC 15444 transcription elongation factor GreA YP_759372.1 646081 R 228405 CDS YP_759373.1 114798818 4289168 complement(646624..649902) 1 NC_008358.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 649902 carB 4289168 carB Hyphomonas neptunium ATCC 15444 carbamoyl-phosphate synthase large subunit YP_759373.1 646624 R 228405 CDS YP_759374.1 114798856 4287820 650025..650420 1 NC_008358.1 putative lipoprotein 650420 4287820 HNE_0645 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759374.1 650025 D 228405 CDS YP_759375.1 114798318 4287101 650465..650788 1 NC_008358.1 hypothetical protein 650788 4287101 HNE_0646 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759375.1 650465 D 228405 CDS YP_759376.1 114797333 4289411 650868..652100 1 NC_008358.1 hypothetical protein 652100 4289411 HNE_0647 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759376.1 650868 D 228405 CDS YP_759377.1 114800337 4289271 complement(652174..652518) 1 NC_008358.1 identified by match to protein family HMM PF05433; putative lipoprotein 652518 4289271 HNE_0648 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759377.1 652174 R 228405 CDS YP_759378.1 114799929 4290083 complement(652594..653328) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 653328 4290083 HNE_0649 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase superfamily protein YP_759378.1 652594 R 228405 CDS YP_759379.1 114797419 4287685 653440..654411 1 NC_008358.1 identified by match to protein family HMM PF01435; M48 family peptidase 654411 4287685 HNE_0650 Hyphomonas neptunium ATCC 15444 M48 family peptidase YP_759379.1 653440 D 228405 CDS YP_759380.1 114798400 4289741 654786..655376 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 655376 4289741 HNE_0651 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_759380.1 654786 D 228405 CDS YP_759381.1 114800411 4290355 655476..656666 1 NC_008358.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 656666 4290355 HNE_0652 Hyphomonas neptunium ATCC 15444 aromatic amino acid aminotransferase YP_759381.1 655476 D 228405 CDS YP_759382.1 114800365 4288728 complement(656715..657002) 1 NC_008358.1 identified by similarity to GB:AAW60109.1; match to protein family HMM PF07045; hypothetical protein 657002 4288728 HNE_0653 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759382.1 656715 R 228405 CDS YP_759383.1 114797914 4287264 complement(657080..658003) 1 NC_008358.1 identified by similarity to GB:AAK22343.1; hypothetical protein 658003 4287264 HNE_0654 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759383.1 657080 R 228405 CDS YP_759384.1 114797229 4287335 complement(658000..658563) 1 NC_008358.1 identified by similarity to SP:P32692; FUR family transcriptional regulator 658563 4287335 HNE_0655 Hyphomonas neptunium ATCC 15444 FUR family transcriptional regulator YP_759384.1 658000 R 228405 CDS YP_759385.1 114800409 4290353 658615..658998 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 658998 4290353 HNE_0656 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_759385.1 658615 D 228405 CDS YP_759386.1 114799232 4288295 659030..659890 1 NC_008358.1 identified by match to protein family HMM PF00877; NlpC/P60 family protein 659890 4288295 HNE_0657 Hyphomonas neptunium ATCC 15444 NlpC/P60 family protein YP_759386.1 659030 D 228405 CDS YP_759387.1 114797971 4288334 complement(659971..660768) 1 NC_008358.1 identified by match to protein family HMM PF00034; cytochrome c family protein 660768 4288334 HNE_0658 Hyphomonas neptunium ATCC 15444 cytochrome c family protein YP_759387.1 659971 R 228405 CDS YP_759388.1 114799113 4289908 660931..661767 1 NC_008358.1 identified by match to protein family HMM PF00800; prephenate dehydratase 661767 4289908 HNE_0659 Hyphomonas neptunium ATCC 15444 prephenate dehydratase YP_759388.1 660931 D 228405 CDS YP_759389.1 114800121 4290454 complement(661751..662671) 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199; LysR family transcriptional regulator 662671 4290454 HNE_0660 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_759389.1 661751 R 228405 CDS YP_759390.1 114797703 4289353 662796..663287 1 NC_008358.1 identified by similarity to GB:AAS72102.1; hypothetical protein 663287 4289353 HNE_0661 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759390.1 662796 D 228405 CDS YP_759391.1 114797133 4288350 663353..663811 1 NC_008358.1 identified by match to protein family HMM PF04945; YHS domain-containing protein 663811 4288350 HNE_0662 Hyphomonas neptunium ATCC 15444 YHS domain-containing protein YP_759391.1 663353 D 228405 CDS YP_759392.1 114800259 4287494 complement(664050..664277) 1 NC_008358.1 hypothetical protein 664277 4287494 HNE_0663 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759392.1 664050 R 228405 CDS YP_759393.1 114798474 4288757 complement(664382..665299) 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 665299 4288757 HNE_0664 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_759393.1 664382 R 228405 CDS YP_759394.1 114798026 4287181 665431..667605 1 NC_008358.1 putative lipoprotein 667605 4287181 HNE_0665 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759394.1 665431 D 228405 CDS YP_759395.1 114797087 4287368 complement(667614..671330) 1 NC_008358.1 identified by similarity to SP:Q9ZG88; match to protein family HMM PF01471; putative localization factor protein PodJ 671330 4287368 HNE_0666 Hyphomonas neptunium ATCC 15444 putative localization factor protein PodJ YP_759395.1 667614 R 228405 CDS YP_759396.1 114799069 4288968 671606..672085 1 NC_008358.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 672085 4288968 HNE_0667 Hyphomonas neptunium ATCC 15444 MerR family transcriptional regulator YP_759396.1 671606 D 228405 CDS YP_759397.1 114800213 4288987 672196..673980 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 673980 4288987 HNE_0668 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_759397.1 672196 D 228405 CDS YP_759398.1 114799086 4287740 674093..675268 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 675268 4287740 HNE_0669 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_759398.1 674093 D 228405 CDS YP_759399.1 114798681 4289862 675276..675716 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 675716 4289862 HNE_0670 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_759399.1 675276 D 228405 CDS YP_759400.1 114797516 4287646 675735..676940 1 NC_008358.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 676940 4287646 HNE_0671 Hyphomonas neptunium ATCC 15444 acetyl-CoA acetyltransferase YP_759400.1 675735 D 228405 CDS YP_759401.1 114797137 4288354 676970..679201 1 NC_008358.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase 679201 4288354 HNE_0672 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase YP_759401.1 676970 D 228405 CDS YP_759402.1 114800079 4289962 complement(679299..682028) 1 NC_008358.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 682028 4289962 HNE_0673 Hyphomonas neptunium ATCC 15444 ribonuclease YP_759402.1 679299 R 228405 CDS YP_759403.1 114800021 4288813 682424..683668 1 NC_008358.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 683668 4288813 HNE_0674 Hyphomonas neptunium ATCC 15444 N-acetylmuramoyl-L-alanine amidase YP_759403.1 682424 D 228405 CDS YP_759404.1 114799492 4289183 683559..685487 1 NC_008358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 685487 4289183 HNE_0675 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759404.1 683559 D 228405 CDS YP_759405.1 114798429 4288168 685501..686397 1 NC_008358.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 686397 ispE 4288168 ispE Hyphomonas neptunium ATCC 15444 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_759405.1 685501 D 228405 CDS YP_759406.1 114797664 4288142 686394..687461 1 NC_008358.1 identified by match to protein family HMM PF00953; glycosyl transferase family protein 687461 4288142 HNE_0677 Hyphomonas neptunium ATCC 15444 glycosyl transferase family protein YP_759406.1 686394 D 228405 CDS YP_759407.1 114798232 4288613 complement(687463..688476) 1 NC_008358.1 identified by match to protein family HMM PF00348; polyprenyl synthetase 688476 4288613 HNE_0678 Hyphomonas neptunium ATCC 15444 polyprenyl synthetase YP_759407.1 687463 R 228405 CDS YP_759408.1 114798516 4290320 688650..689144 1 NC_008358.1 identified by similarity to GB:AAK23266.1; putative lipoprotein 689144 4290320 HNE_0679 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759408.1 688650 D 228405 CDS YP_759409.1 114799829 4290137 689144..689350 1 NC_008358.1 identified by similarity to PIR:AG3443; hypothetical protein 689350 4290137 HNE_0680 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759409.1 689144 D 228405 CDS YP_759410.1 114798814 4289164 689347..690090 1 NC_008358.1 hypothetical protein 690090 4289164 HNE_0681 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759410.1 689347 D 228405 CDS YP_759411.1 114799568 4288553 690167..690280 1 NC_008358.1 hypothetical protein 690280 4288553 HNE_0682 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759411.1 690167 D 228405 CDS YP_759412.1 114799009 4288441 690350..691237 1 NC_008358.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 691237 glyQ 4288441 glyQ Hyphomonas neptunium ATCC 15444 glycyl-tRNA synthetase subunit alpha YP_759412.1 690350 D 228405 CDS YP_759413.1 114798015 4290071 691318..691839 1 NC_008358.1 putative lipoprotein 691839 4290071 HNE_0684 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759413.1 691318 D 228405 CDS YP_759414.1 114797868 4288658 691934..694054 1 NC_008358.1 identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 694054 glyS 4288658 glyS Hyphomonas neptunium ATCC 15444 glycyl-tRNA synthetase subunit beta YP_759414.1 691934 D 228405 CDS YP_759415.1 114800443 4288185 694206..696923 1 NC_008358.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 696923 ppdK 4288185 ppdK Hyphomonas neptunium ATCC 15444 pyruvate phosphate dikinase YP_759415.1 694206 D 228405 CDS YP_759416.1 114797673 4288151 697290..698519 1 NC_008358.1 identified by match to protein family HMM PF07486; hydrolase 698519 4288151 HNE_0687 Hyphomonas neptunium ATCC 15444 hydrolase YP_759416.1 697290 D 228405 CDS YP_759417.1 114798485 4288768 complement(698604..699413) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase 699413 4288768 HNE_0688 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase YP_759417.1 698604 R 228405 CDS YP_759418.1 114797685 4287891 complement(699469..700326) 1 NC_008358.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 700326 nadC 4287891 nadC Hyphomonas neptunium ATCC 15444 nicotinate-nucleotide pyrophosphorylase YP_759418.1 699469 R 228405 CDS YP_759419.1 114800426 4290370 complement(700323..701891) 1 NC_008358.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 701891 nadB 4290370 nadB Hyphomonas neptunium ATCC 15444 L-aspartate oxidase YP_759419.1 700323 R 228405 CDS YP_759420.1 114799594 4289090 complement(701875..702354) 1 NC_008358.1 hypothetical protein 702354 4289090 HNE_0691 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759420.1 701875 R 228405 CDS YP_759421.1 114798115 4289610 complement(702423..703433) 1 NC_008358.1 identified by match to protein family HMM PF02445; match to protein family HMM TIGR00550; quinolinate synthetase complex subunit A 703433 nadA 4289610 nadA Hyphomonas neptunium ATCC 15444 quinolinate synthetase complex subunit A YP_759421.1 702423 R 228405 CDS YP_759422.1 114799423 4289327 complement(703802..705178) 1 NC_008358.1 hypothetical protein 705178 4289327 HNE_0693 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759422.1 703802 R 228405 CDS YP_759423.1 114799798 4289815 complement(705219..706517) 1 NC_008358.1 identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 706517 4289815 HNE_0694 Hyphomonas neptunium ATCC 15444 amidohydrolase YP_759423.1 705219 R 228405 CDS YP_759424.1 114797080 4287361 complement(707019..708629) 1 NC_008358.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; putative ATP-dependent RNA helicase RhlE 708629 4287361 HNE_0695 Hyphomonas neptunium ATCC 15444 putative ATP-dependent RNA helicase RhlE YP_759424.1 707019 R 228405 CDS YP_759425.1 114797796 4288060 complement(708830..709492) 1 NC_008358.1 identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe 709492 sodB 4288060 sodB Hyphomonas neptunium ATCC 15444 superoxide dismutase, Fe YP_759425.1 708830 R 228405 CDS YP_759426.1 114799019 4287536 709495..710154 1 NC_008358.1 hypothetical protein 710154 4287536 HNE_0697 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759426.1 709495 D 228405 CDS YP_759427.1 114797576 4286981 710286..710822 1 NC_008358.1 putative lipoprotein 710822 4286981 HNE_0698 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759427.1 710286 D 228405 CDS YP_759428.1 114798797 4287780 complement(710832..711809) 1 NC_008358.1 identified by match to protein family HMM PF03279; lipid A biosynthesis acyltransferase 711809 4287780 HNE_0699 Hyphomonas neptunium ATCC 15444 lipid A biosynthesis acyltransferase YP_759428.1 710832 R 228405 CDS YP_759429.1 114799558 4288543 complement(711806..712804) 1 NC_008358.1 identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 712804 lpxK 4288543 lpxK Hyphomonas neptunium ATCC 15444 tetraacyldisaccharide 4'-kinase YP_759429.1 711806 R 228405 CDS YP_759430.1 114799880 4287463 complement(712801..714090) 1 NC_008358.1 identified by match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase 714090 kdtA 4287463 kdtA Hyphomonas neptunium ATCC 15444 3-deoxy-D-manno-octulosonic-acid transferase YP_759430.1 712801 R 228405 CDS YP_759431.1 114797159 4287618 complement(714087..714866) 1 NC_008358.1 identified by similarity to GB:AAN33418.1; match to protein family HMM PF04028; hypothetical protein 714866 4287618 HNE_0702 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759431.1 714087 R 228405 CDS YP_759432.1 114797471 4288416 complement(715690..716403) 1 NC_008358.1 identified by match to protein family HMM PF00702; phosphoglycolate phosphatase 716403 gph 4288416 gph Hyphomonas neptunium ATCC 15444 phosphoglycolate phosphatase YP_759432.1 715690 R 228405 CDS YP_759433.1 114797715 4289230 716484..717869 1 NC_008358.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 717869 glmU 4289230 glmU Hyphomonas neptunium ATCC 15444 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_759433.1 716484 D 228405 CDS YP_759434.1 114798972 4287429 717870..718580 1 NC_008358.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 718580 rpiA 4287429 rpiA Hyphomonas neptunium ATCC 15444 ribose-5-phosphate isomerase A YP_759434.1 717870 D 228405 CDS YP_759435.1 114799468 4290049 718635..720020 1 NC_008358.1 identified by similarity to SP:P23189; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424; glutathione-disulfide reductase 720020 gor 4290049 gor Hyphomonas neptunium ATCC 15444 glutathione-disulfide reductase YP_759435.1 718635 D 228405 CDS YP_759436.1 114800256 4287491 complement(720055..721362) 1 NC_008358.1 identified by match to protein family HMM PF01656; nucleotide binding protein 721362 4287491 HNE_0708 Hyphomonas neptunium ATCC 15444 nucleotide binding protein YP_759436.1 720055 R 228405 CDS YP_759437.1 114797431 4287168 721515..722891 1 NC_008358.1 identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 722891 4287168 HNE_0709 Hyphomonas neptunium ATCC 15444 3-deoxy-7-phosphoheptulonate synthase YP_759437.1 721515 D 228405 CDS YP_759438.1 114798192 4288010 722960..723676 1 NC_008358.1 identified by match to protein family HMM PF02517; CAAX amino protease 723676 4288010 HNE_0710 Hyphomonas neptunium ATCC 15444 CAAX amino protease YP_759438.1 722960 D 228405 CDS YP_759439.1 114798693 4289763 723851..725266 1 NC_008358.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 725266 4289763 HNE_0711 Hyphomonas neptunium ATCC 15444 MATE efflux family protein YP_759439.1 723851 D 228405 CDS YP_759440.1 114799692 4288714 complement(725298..725564) 1 NC_008358.1 identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU 725564 hup1 4288714 hup1 Hyphomonas neptunium ATCC 15444 DNA-binding protein HU YP_759440.1 725298 R 228405 CDS YP_759441.1 114800309 4287954 complement(725664..726575) 1 NC_008358.1 identified by similarity to GB:AAK23994.1; hypothetical protein 726575 4287954 HNE_0713 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759441.1 725664 R 228405 CDS YP_759442.1 114799480 4289171 complement(726579..727601) 1 NC_008358.1 identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase 727601 4289171 HNE_0714 Hyphomonas neptunium ATCC 15444 L4BD family NADP-dependent oxidoreductase YP_759442.1 726579 R 228405 CDS YP_759443.1 114798808 4289158 727824..728750 1 NC_008358.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 728750 4289158 HNE_0715 Hyphomonas neptunium ATCC 15444 Gfo/Idh/MocA family oxidoreductase YP_759443.1 727824 D 228405 CDS YP_759444.1 114800463 4288205 complement(728752..729468) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 729468 4288205 HNE_0716 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759444.1 728752 R 228405 CDS YP_759445.1 114797301 4289225 complement(729490..730941) 1 NC_008358.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 730941 purF 4289225 purF Hyphomonas neptunium ATCC 15444 amidophosphoribosyltransferase YP_759445.1 729490 R 228405 CDS YP_759446.1 114798030 4287185 complement(731057..731905) 1 NC_008358.1 hypothetical protein 731905 4287185 HNE_0718 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759446.1 731057 R 228405 CDS YP_759447.1 114798180 4287998 complement(731970..732497) 1 NC_008358.1 identified by match to protein family HMM PF02674; CvpA family protein 732497 4287998 HNE_0719 Hyphomonas neptunium ATCC 15444 CvpA family protein YP_759447.1 731970 R 228405 CDS YP_759448.1 114799161 4287013 complement(732490..733872) 1 NC_008358.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 733872 radA 4287013 radA Hyphomonas neptunium ATCC 15444 DNA repair protein RadA YP_759448.1 732490 R 228405 CDS YP_759449.1 114797652 4289046 733871..734464 1 NC_008358.1 hypothetical protein 734464 4289046 HNE_0721 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759449.1 733871 D 228405 CDS YP_759450.1 114798488 4288771 734501..735694 1 NC_008358.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 735694 4288771 HNE_0722 Hyphomonas neptunium ATCC 15444 pyridine nucleotide-disulfide oxidoreductase YP_759450.1 734501 D 228405 CDS YP_759451.1 114798614 4289873 complement(736557..737321) 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 737321 4289873 HNE_0723 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_759451.1 736557 R 228405 CDS YP_759452.1 114798102 4289597 complement(737318..738103) 1 NC_008358.1 identified by similarity to GB:AAK25657.1; match to protein family HMM PF02405; hypothetical protein 738103 4289597 HNE_0724 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759452.1 737318 R 228405 CDS YP_759453.1 114797948 4289560 complement(738110..739165) 1 NC_008358.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 739165 alr1 4289560 alr1 Hyphomonas neptunium ATCC 15444 alanine racemase YP_759453.1 738110 R 228405 CDS YP_759454.1 114797393 4287089 complement(739198..740850) 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family protein 740850 4287089 HNE_0726 Hyphomonas neptunium ATCC 15444 major facilitator family protein YP_759454.1 739198 R 228405 CDS YP_759455.1 114799912 4290242 740887..741318 1 NC_008358.1 hypothetical protein 741318 4290242 HNE_0727 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759455.1 740887 D 228405 CDS YP_759456.1 114799373 4288844 741404..742585 1 NC_008358.1 identified by similarity to GB:AAK22932.1; hypothetical protein 742585 4288844 HNE_0728 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759456.1 741404 D 228405 CDS YP_759457.1 114799200 4289955 742679..743164 1 NC_008358.1 identified by match to protein family HMM PF01899; MnhE/PhaE family monovalent cation/proton antiporter 743164 4289955 HNE_0729 Hyphomonas neptunium ATCC 15444 MnhE/PhaE family monovalent cation/proton antiporter YP_759457.1 742679 D 228405 CDS YP_759458.1 114799983 4290198 743164..743460 1 NC_008358.1 identified by match to protein family HMM PF04066; MnhF/PhaF family monovalent cation/proton antiporter 743460 4290198 HNE_0730 Hyphomonas neptunium ATCC 15444 MnhF/PhaF family monovalent cation/proton antiporter YP_759458.1 743164 D 228405 CDS YP_759459.1 114797245 4287351 743462..743830 1 NC_008358.1 identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300; MnhG/PhaG family monovalent cation/proton antiporter 743830 4287351 HNE_0731 Hyphomonas neptunium ATCC 15444 MnhG/PhaG family monovalent cation/proton antiporter YP_759459.1 743462 D 228405 CDS YP_759460.1 114797993 4289314 743827..744444 1 NC_008358.1 hypothetical protein 744444 4289314 HNE_0732 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759460.1 743827 D 228405 CDS YP_759461.1 114799795 4289812 744444..744896 1 NC_008358.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 744896 4289812 HNE_0733 Hyphomonas neptunium ATCC 15444 putative monovalent cation/H+ antiporter subunit B YP_759461.1 744444 D 228405 CDS YP_759462.1 114799114 4289909 744901..745401 1 NC_008358.1 identified by match to protein family HMM PF00420; putative NADH-quinone oxidoreductase 745401 4289909 HNE_0734 Hyphomonas neptunium ATCC 15444 putative NADH-quinone oxidoreductase YP_759462.1 744901 D 228405 CDS YP_759463.1 114800322 4289256 745440..746936 1 NC_008358.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 746936 4289256 HNE_0735 Hyphomonas neptunium ATCC 15444 putative monovalent cation/H+ antiporter subunit D YP_759463.1 745440 D 228405 CDS YP_759464.1 114797124 4287152 746933..748441 1 NC_008358.1 identified by match to protein family HMM PF00361; putative NADH-quinone oxidoreductase 748441 4287152 HNE_0736 Hyphomonas neptunium ATCC 15444 putative NADH-quinone oxidoreductase YP_759464.1 746933 D 228405 CDS YP_759465.1 114798330 4287113 748438..748881 1 NC_008358.1 hypothetical protein 748881 4287113 HNE_0737 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759465.1 748438 D 228405 CDS YP_759466.1 114798610 4289869 748881..750656 1 NC_008358.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 750656 4289869 HNE_0738 Hyphomonas neptunium ATCC 15444 putative monovalent cation/H+ antiporter subunit D YP_759466.1 748881 D 228405 CDS YP_759467.1 114799831 4290139 750827..751240 1 NC_008358.1 identified by similarity to PIR:G97470; match to protein family HMM PF05443; Ros/MucR family transcriptional regulator 751240 4290139 HNE_0739 Hyphomonas neptunium ATCC 15444 Ros/MucR family transcriptional regulator YP_759467.1 750827 D 228405 CDS YP_759468.1 114797666 4288144 751388..751888 1 NC_008358.1 identified by similarity to GB:AAV95219.1; hypothetical protein 751888 4288144 HNE_0740 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759468.1 751388 D 228405 CDS YP_759469.1 114799179 4288396 751990..752334 1 NC_008358.1 identified by similarity to GB:AAK23042.1; DnaA domain-containing protein 752334 4288396 HNE_0741 Hyphomonas neptunium ATCC 15444 DnaA domain-containing protein YP_759469.1 751990 D 228405 CDS YP_759470.1 114800191 4290035 752331..753014 1 NC_008358.1 hypothetical protein 753014 4290035 HNE_0742 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759470.1 752331 D 228405 CDS YP_759471.1 114800096 4289979 complement(752667..752933) 1 NC_008358.1 hypothetical protein 752933 4289979 HNE_0743 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759471.1 752667 R 228405 CDS YP_759472.1 114797908 4287258 complement(753021..753440) 1 NC_008358.1 identified by match to protein family HMM PF02657; SufE family Fe-S metabolism protein 753440 4287258 HNE_0744 Hyphomonas neptunium ATCC 15444 SufE family Fe-S metabolism protein YP_759472.1 753021 R 228405 CDS YP_759473.1 114797262 4288460 complement(753527..754525) 1 NC_008358.1 identified by similarity to GB:AAK22473.1; hypothetical protein 754525 4288460 HNE_0745 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759473.1 753527 R 228405 CDS YP_759474.1 114798414 4288153 754650..756269 1 NC_008358.1 identified by similarity to SP:Q03228; match to protein family HMM PF00512; match to protein family HMM PF02518; putative sensor histidine kinase DivJ 756269 4288153 HNE_0746 Hyphomonas neptunium ATCC 15444 putative sensor histidine kinase DivJ YP_759474.1 754650 D 228405 CDS YP_759475.1 114799583 4289079 756361..756672 1 NC_008358.1 putative lipoprotein 756672 4289079 HNE_0747 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759475.1 756361 D 228405 CDS YP_759476.1 114797676 4287882 756703..757050 1 NC_008358.1 identified by similarity to GB:AAK23049.1; match to protein family HMM PF07372; hypothetical protein 757050 4287882 HNE_0748 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759476.1 756703 D 228405 CDS YP_759477.1 114798927 4287871 757148..757552 1 NC_008358.1 putative lipoprotein 757552 4287871 HNE_0749 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759477.1 757148 D 228405 CDS YP_759478.1 114799697 4289115 757679..757999 1 NC_008358.1 hypothetical protein 757999 4289115 HNE_0750 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759478.1 757679 D 228405 CDS YP_759479.1 114798497 4287750 758071..758427 1 NC_008358.1 hypothetical protein 758427 4287750 HNE_0751 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759479.1 758071 D 228405 CDS YP_759480.1 114798284 4287225 758558..760159 1 NC_008358.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; putative peptide chain release factor 3 760159 4287225 HNE_0752 Hyphomonas neptunium ATCC 15444 putative peptide chain release factor 3 YP_759480.1 758558 D 228405 CDS YP_759481.1 114799424 4289328 complement(760128..760610) 1 NC_008358.1 identified by similarity to GB:CAA65843.1; hypothetical protein 760610 4289328 HNE_0753 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759481.1 760128 R 228405 CDS YP_759482.1 114799256 4289686 complement(760691..762517) 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 762517 4289686 HNE_0754 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_759482.1 760691 R 228405 CDS YP_759483.1 114800237 4287472 complement(762551..763225) 1 NC_008358.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A 763225 rsuA 4287472 rsuA Hyphomonas neptunium ATCC 15444 ribosomal small subunit pseudouridine synthase A YP_759483.1 762551 R 228405 CDS YP_759484.1 114797404 4287670 complement(763233..764273) 1 NC_008358.1 identified by match to protein family HMM PF05175; putative methyltransferase 764273 4287670 HNE_0756 Hyphomonas neptunium ATCC 15444 putative methyltransferase YP_759484.1 763233 R 228405 CDS YP_759485.1 114798177 4287666 complement(764335..765243) 1 NC_008358.1 putative lipoprotein 765243 4287666 HNE_0757 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759485.1 764335 R 228405 CDS YP_759486.1 114798967 4287424 complement(765360..766610) 1 NC_008358.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 766610 4287424 HNE_0758 Hyphomonas neptunium ATCC 15444 acetyl-CoA acetyltransferase YP_759486.1 765360 R 228405 CDS YP_759487.1 114799024 4287541 767029..767448 1 NC_008358.1 identified by match to protein family HMM PF07811; TadE-like family protein 767448 4287541 HNE_0759 Hyphomonas neptunium ATCC 15444 TadE-like family protein YP_759487.1 767029 D 228405 CDS YP_759488.1 114799760 4288044 767450..769180 1 NC_008358.1 identified by similarity to PIR:AE2774; hypothetical protein 769180 4288044 HNE_0760 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759488.1 767450 D 228405 CDS YP_759489.1 114798754 4287989 complement(769227..770387) 1 NC_008358.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 770387 dnaJ 4287989 dnaJ Hyphomonas neptunium ATCC 15444 chaperone protein DnaJ YP_759489.1 769227 R 228405 CDS YP_759490.1 114799659 4288681 complement(770487..771785) 1 NC_008358.1 identified by similarity to GB:CAE25769.1; hypothetical protein 771785 4288681 HNE_0762 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759490.1 770487 R 228405 CDS YP_759491.1 114797084 4287365 771833..772708 1 NC_008358.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein 772708 4287365 HNE_0763 Hyphomonas neptunium ATCC 15444 tetrapyrrole methylase family protein YP_759491.1 771833 D 228405 CDS YP_759492.1 114797099 4287966 772698..773066 1 NC_008358.1 identified by similarity to SP:Q8UIJ2; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 773066 4287966 HNE_0764 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759492.1 772698 D 228405 CDS YP_759493.1 114797969 4288332 773212..774978 1 NC_008358.1 hypothetical protein 774978 4288332 HNE_0765 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759493.1 773212 D 228405 CDS YP_759494.1 114799183 4288400 774989..776116 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 776116 4288400 HNE_0766 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_759494.1 774989 D 228405 CDS YP_759495.1 114799964 4290178 complement(776126..776593) 1 NC_008358.1 identified by match to protein family HMM PF00034; cytochrome c family protein 776593 4290178 HNE_0767 Hyphomonas neptunium ATCC 15444 cytochrome c family protein YP_759495.1 776126 R 228405 CDS YP_759496.1 114798595 4290498 776708..778801 1 NC_008358.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 778801 4290498 HNE_0768 Hyphomonas neptunium ATCC 15444 1A family penicillin-binding protein YP_759496.1 776708 D 228405 CDS YP_759497.1 114799344 4288114 complement(778903..779886) 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 779886 4288114 HNE_0769 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_759497.1 778903 R 228405 CDS YP_759498.1 114797253 4288451 780195..780776 1 NC_008358.1 identified by match to protein family HMM PF07298; NnrU family protein 780776 4288451 HNE_0770 Hyphomonas neptunium ATCC 15444 NnrU family protein YP_759498.1 780195 D 228405 CDS YP_759499.1 114797775 4289619 780833..781660 1 NC_008358.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 781660 panB 4289619 panB Hyphomonas neptunium ATCC 15444 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_759499.1 780833 D 228405 CDS YP_759500.1 114799082 4287736 781740..782456 1 NC_008358.1 identified by similarity to GB:BAC49315.1; hypothetical protein 782456 4287736 HNE_0772 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759500.1 781740 D 228405 CDS YP_759501.1 114798096 4288244 782453..783802 1 NC_008358.1 PQQ repeat-containing protein 783802 4288244 HNE_0773 Hyphomonas neptunium ATCC 15444 PQQ repeat-containing protein YP_759501.1 782453 D 228405 CDS YP_759502.1 114798294 4287235 783855..785387 1 NC_008358.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 785387 engA 4287235 engA Hyphomonas neptunium ATCC 15444 GTP-binding protein EngA YP_759502.1 783855 D 228405 CDS YP_759503.1 114797309 4287514 complement(785452..786522) 1 NC_008358.1 identified by match to protein family HMM PF00483; mannose-1-phosphate guanylyltransferase 786522 4287514 HNE_0775 Hyphomonas neptunium ATCC 15444 mannose-1-phosphate guanylyltransferase YP_759503.1 785452 R 228405 CDS YP_759504.1 114799988 4290203 complement(786610..788541) 1 NC_008358.1 identified by match to protein family HMM PF00009; match to protein family HMM PF01583; match to protein family HMM PF03144; match to protein family HMM TIGR00455; match to protein family HMM TIGR02034; sulfate adenylyltransferase 788541 cysNC 4290203 cysNC Hyphomonas neptunium ATCC 15444 sulfate adenylyltransferase YP_759504.1 786610 R 228405 CDS YP_759505.1 114799213 4289582 complement(788541..789527) 1 NC_008358.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 789527 cysD 4289582 cysD Hyphomonas neptunium ATCC 15444 sulfate adenylyltransferase subunit 2 YP_759505.1 788541 R 228405 CDS YP_759506.1 114800082 4289965 789693..791519 1 NC_008358.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 791519 glmS 4289965 glmS Hyphomonas neptunium ATCC 15444 glucosamine--fructose-6-phosphate aminotransferase YP_759506.1 789693 D 228405 CDS YP_759507.1 114799033 4290511 791573..792154 1 NC_008358.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 792154 rfbC 4290511 rfbC Hyphomonas neptunium ATCC 15444 dTDP-4-dehydrorhamnose 3,5-epimerase YP_759507.1 791573 D 228405 CDS YP_759508.1 114798649 4290395 792151..793041 1 NC_008358.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 793041 rfbD 4290395 rfbD Hyphomonas neptunium ATCC 15444 dTDP-4-dehydrorhamnose reductase YP_759508.1 792151 D 228405 CDS YP_759509.1 114797221 4289938 793156..793989 1 NC_008358.1 hypothetical protein 793989 4289938 HNE_0781 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759509.1 793156 D 228405 CDS YP_759510.1 114797227 4287333 complement(793956..795161) 1 NC_008358.1 identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase 795161 4287333 HNE_0782 Hyphomonas neptunium ATCC 15444 N-acylglucosamine 2-epimerase YP_759510.1 793956 R 228405 CDS YP_759511.1 114799993 4290208 795428..796582 1 NC_008358.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein 796582 4290208 HNE_0783 Hyphomonas neptunium ATCC 15444 DegT/DnrJ/EryC1/StrS aminotransferase family protein YP_759511.1 795428 D 228405 CDS YP_759512.1 114800368 4288731 complement(796755..796973) 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 796973 4288731 HNE_0784 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_759512.1 796755 R 228405 CDS YP_759513.1 114797997 4289318 797474..798142 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 798142 4289318 HNE_0785 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_759513.1 797474 D 228405 CDS YP_759514.1 114798411 4289752 complement(798390..799571) 1 NC_008358.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 799571 metK 4289752 metK Hyphomonas neptunium ATCC 15444 S-adenosylmethionine synthetase YP_759514.1 798390 R 228405 CDS YP_759515.1 114797552 4287387 complement(799594..800451) 1 NC_008358.1 identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655; formyltetrahydrofolate deformylase 800451 purU 4287387 purU Hyphomonas neptunium ATCC 15444 formyltetrahydrofolate deformylase YP_759515.1 799594 R 228405 CDS YP_759516.1 114798407 4289748 complement(800471..801880) 1 NC_008358.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 801880 ahcY 4289748 ahcY Hyphomonas neptunium ATCC 15444 S-adenosyl-L-homocysteine hydrolase YP_759516.1 800471 R 228405 CDS YP_759517.1 114797641 4289035 complement(801993..802868) 1 NC_008358.1 identified by similarity to SP:P37744; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase 802868 rfbA 4289035 rfbA Hyphomonas neptunium ATCC 15444 glucose-1-phosphate thymidylyltransferase YP_759517.1 801993 R 228405 CDS YP_759518.1 114799940 4290095 complement(802980..804077) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 804077 rfbB 4290095 rfbB Hyphomonas neptunium ATCC 15444 dTDP-glucose 4,6-dehydratase YP_759518.1 802980 R 228405 CDS YP_759519.1 114798886 4287577 complement(804078..804470) 1 NC_008358.1 putative dTDP-4-dehydrorhamnose 3,5-epimerase 804470 4287577 HNE_0791 Hyphomonas neptunium ATCC 15444 putative dTDP-4-dehydrorhamnose 3,5-epimerase YP_759519.1 804078 R 228405 CDS YP_759520.1 114798947 4289646 804821..806005 1 NC_008358.1 identified by similarity to GB:AAK53483.1; putative glycosyl transferase 806005 4289646 HNE_0792 Hyphomonas neptunium ATCC 15444 putative glycosyl transferase YP_759520.1 804821 D 228405 CDS YP_759521.1 114798249 4288942 806469..807446 1 NC_008358.1 identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 807446 gmd 4288942 gmd Hyphomonas neptunium ATCC 15444 GDP-mannose 4,6-dehydratase YP_759521.1 806469 D 228405 CDS YP_759522.1 114797456 4288576 807479..808453 1 NC_008358.1 identified by similarity to GB:AAS55712.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; putative GDP-6-deoxy-D-lyxo-4-hexulose reductase 808453 4288576 HNE_0794 Hyphomonas neptunium ATCC 15444 putative GDP-6-deoxy-D-lyxo-4-hexulose reductase YP_759522.1 807479 D 228405 CDS YP_759523.1 114800250 4287485 808521..809315 1 NC_008358.1 identified by similarity to GB:AAN67398.1; match to protein family HMM PF01061; lipopolysaccharide ABC transporter permease 809315 4287485 HNE_0795 Hyphomonas neptunium ATCC 15444 lipopolysaccharide ABC transporter permease YP_759523.1 808521 D 228405 CDS YP_759524.1 114799437 4289341 809312..810565 1 NC_008358.1 identified by similarity to GB:AAF04381.1; match to protein family HMM PF00005; lipopolysaccharide ABC transporter ATP-binding protein 810565 4289341 HNE_0796 Hyphomonas neptunium ATCC 15444 lipopolysaccharide ABC transporter ATP-binding protein YP_759524.1 809312 D 228405 CDS YP_759525.1 114798665 4289846 810562..811959 1 NC_008358.1 identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 811959 4289846 HNE_0797 Hyphomonas neptunium ATCC 15444 FkbM family methyltransferase YP_759525.1 810562 D 228405 CDS YP_759526.1 114797898 4288086 complement(812047..814221) 1 NC_008358.1 hypothetical protein 814221 4288086 HNE_0798 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759526.1 812047 R 228405 CDS YP_759527.1 114799784 4289801 complement(814238..815158) 1 NC_008358.1 identified by similarity to GB:BAB53993.1; hypothetical protein 815158 4289801 HNE_0799 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759527.1 814238 R 228405 CDS YP_759528.1 114798982 4288258 complement(815165..815803) 1 NC_008358.1 identified by similarity to SP:P17993; 3-demethylubiquinone-9 3-methyltransferase 815803 4288258 HNE_0800 Hyphomonas neptunium ATCC 15444 3-demethylubiquinone-9 3-methyltransferase YP_759528.1 815165 R 228405 CDS YP_759529.1 114798217 4287841 complement(815822..816772) 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 816772 4287841 HNE_0801 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_759529.1 815822 R 228405 CDS YP_759530.1 114799742 4288026 818133..820280 1 NC_008358.1 hypothetical protein 820280 4288026 HNE_0803 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759530.1 818133 D 228405 CDS YP_759531.1 114799110 4289905 complement(820414..824136) 1 NC_008358.1 identified by similarity to GB:BAA92237.1; match to protein family HMM PF00534; putative mannosyltransferase 824136 4289905 HNE_0804 Hyphomonas neptunium ATCC 15444 putative mannosyltransferase YP_759531.1 820414 R 228405 CDS YP_759532.1 114798009 4290065 complement(824692..825735) 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 825735 4290065 HNE_0805 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_759532.1 824692 R 228405 CDS YP_759533.1 114797175 4287045 complement(825754..826605) 1 NC_008358.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 826605 kdsA 4287045 kdsA Hyphomonas neptunium ATCC 15444 2-dehydro-3-deoxyphosphooctonate aldolase YP_759533.1 825754 R 228405 CDS YP_759534.1 114800116 4289999 827102..827566 1 NC_008358.1 hypothetical protein 827566 4289999 HNE_0807 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759534.1 827102 D 228405 CDS YP_759535.1 114799321 4287330 complement(827714..828103) 1 NC_008358.1 identified by similarity to GB:AAK25414.1; hypothetical protein 828103 4287330 HNE_0808 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759535.1 827714 R 228405 CDS YP_759536.1 114798494 4287747 828265..829605 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 829605 4287747 HNE_0809 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_759536.1 828265 D 228405 CDS YP_759537.1 114800287 4287932 complement(829662..831026) 1 NC_008358.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 831026 tnaA 4287932 tnaA Hyphomonas neptunium ATCC 15444 tryptophanase YP_759537.1 829662 R 228405 CDS YP_759538.1 114799965 4290179 831075..833033 1 NC_008358.1 hypothetical protein 833033 4290179 HNE_0811 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759538.1 831075 D 228405 CDS YP_759539.1 114798051 4289526 complement(833040..834020) 1 NC_008358.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding oxidoreductase 834020 4289526 HNE_0812 Hyphomonas neptunium ATCC 15444 NAD-binding oxidoreductase YP_759539.1 833040 R 228405 CDS YP_759540.1 114797297 4289221 834208..834633 1 NC_008358.1 hypothetical protein 834633 4289221 HNE_0813 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759540.1 834208 D 228405 CDS YP_759541.1 114800053 4289376 834705..834983 1 NC_008358.1 hypothetical protein 834983 4289376 HNE_0814 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759541.1 834705 D 228405 CDS YP_759542.1 114800248 4287483 complement(834989..838228) 1 NC_008358.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 838228 4287483 HNE_0815 Hyphomonas neptunium ATCC 15444 AcrB/AcrD/AcrF family protein YP_759542.1 834989 R 228405 CDS YP_759543.1 114799367 4288838 complement(838225..839343) 1 NC_008358.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 839343 4288838 HNE_0816 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_759543.1 838225 R 228405 CDS YP_759544.1 114797830 4288774 complement(839464..840963) 1 NC_008358.1 identified by similarity to SP:P13397; match to protein family HMM PF01425; putative 6-aminohexanoate-cyclic-dimer hydrolase 840963 4288774 HNE_0817 Hyphomonas neptunium ATCC 15444 putative 6-aminohexanoate-cyclic-dimer hydrolase YP_759544.1 839464 R 228405 CDS YP_759545.1 114798580 4289510 841126..841875 1 NC_008358.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 841875 4289510 HNE_0818 Hyphomonas neptunium ATCC 15444 hemolysin A YP_759545.1 841126 D 228405 CDS YP_759546.1 114799835 4290143 complement(841876..842451) 1 NC_008358.1 putative lipoprotein 842451 4290143 HNE_0819 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759546.1 841876 R 228405 CDS YP_759547.1 114799517 4288910 complement(842544..843443) 1 NC_008358.1 hypothetical protein 843443 4288910 HNE_0820 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759547.1 842544 R 228405 CDS YP_759548.1 114798952 4289652 843453..844550 1 NC_008358.1 hypothetical protein 844550 4289652 HNE_0821 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759548.1 843453 D 228405 CDS YP_759549.1 114799703 4289121 844701..845201 1 NC_008358.1 identified by similarity to PIR:S70957; hypothetical protein 845201 4289121 HNE_0822 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759549.1 844701 D 228405 CDS YP_759550.1 114797430 4287167 complement(845285..846376) 1 NC_008358.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 846376 aroC 4287167 aroC Hyphomonas neptunium ATCC 15444 chorismate synthase YP_759550.1 845285 R 228405 CDS YP_759551.1 114798246 4288939 846461..847120 1 NC_008358.1 identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558; pyridoxamine 5'-phosphate oxidase 847120 pdxH 4288939 pdxH Hyphomonas neptunium ATCC 15444 pyridoxamine 5'-phosphate oxidase YP_759551.1 846461 D 228405 CDS YP_759552.1 114798862 4289718 complement(847137..847586) 1 NC_008358.1 identified by similarity to GB:CAC47451.1; hypothetical protein 847586 4289718 HNE_0825 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759552.1 847137 R 228405 CDS YP_759553.1 114799860 4287442 847870..848253 1 NC_008358.1 hypothetical protein 848253 4287442 HNE_0826 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759553.1 847870 D 228405 CDS YP_759554.1 114797643 4289037 complement(848319..849167) 1 NC_008358.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 849167 4289037 HNE_0827 Hyphomonas neptunium ATCC 15444 glycerophosphoryl diester phosphodiesterase family protein YP_759554.1 848319 R 228405 CDS YP_759555.1 114798331 4287114 849439..851064 1 NC_008358.1 activates fatty acids by binding to coenzyme A; putative acyl-CoA synthetase 851064 alkK 4287114 alkK Hyphomonas neptunium ATCC 15444 putative acyl-CoA synthetase YP_759555.1 849439 D 228405 CDS YP_759556.1 114799627 4290267 851073..851420 1 NC_008358.1 identified by similarity to GB:BAC46552.1; hypothetical protein 851420 4290267 HNE_0829 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759556.1 851073 D 228405 CDS YP_759557.1 114799715 4289133 851485..852393 1 NC_008358.1 hypothetical protein 852393 4289133 HNE_0830 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759557.1 851485 D 228405 CDS YP_759558.1 114799159 4287011 complement(852397..852870) 1 NC_008358.1 putative lipoprotein 852870 4287011 HNE_0831 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759558.1 852397 R 228405 CDS YP_759559.1 114798113 4289608 complement(853007..853483) 1 NC_008358.1 identified by match to protein family HMM PF03061; thioesterase family protein 853483 4289608 HNE_0832 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_759559.1 853007 R 228405 CDS YP_759560.1 114798492 4287745 complement(853480..853851) 1 NC_008358.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222; export-related chaperone CsaA 853851 csaA 4287745 csaA Hyphomonas neptunium ATCC 15444 export-related chaperone CsaA YP_759560.1 853480 R 228405 CDS YP_759561.1 114800132 4290465 complement(853851..854618) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 854618 4290465 HNE_0834 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759561.1 853851 R 228405 CDS YP_759562.1 114800502 4289455 854792..855199 1 NC_008358.1 hypothetical protein 855199 4289455 HNE_0835 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759562.1 854792 D 228405 CDS YP_759563.1 114799503 4288896 855275..857278 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 857278 4288896 HNE_0836 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_759563.1 855275 D 228405 CDS YP_759564.1 114798093 4288241 857385..857879 1 NC_008358.1 identified by match to protein family HMM PF03795; YCII domain-containing protein 857879 4288241 HNE_0837 Hyphomonas neptunium ATCC 15444 YCII domain-containing protein YP_759564.1 857385 D 228405 CDS YP_759565.1 114797174 4287044 complement(857889..859553) 1 NC_008358.1 identified by similarity to GB:CAG76557.1; match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein 859553 4287044 HNE_0838 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759565.1 857889 R 228405 CDS YP_759566.1 114798406 4289747 859665..860498 1 NC_008358.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 860498 4289747 HNE_0839 Hyphomonas neptunium ATCC 15444 fumarylacetoacetate hydrolase family protein YP_759566.1 859665 D 228405 CDS YP_759567.1 114797619 4288641 860733..862088 1 NC_008358.1 identified by match to protein family HMM PF00563; EAL domain-containing protein 862088 4288641 HNE_0840 Hyphomonas neptunium ATCC 15444 EAL domain-containing protein YP_759567.1 860733 D 228405 CDS YP_759568.1 114799049 4290527 862167..862739 1 NC_008358.1 putative lipoprotein 862739 4290527 HNE_0841 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759568.1 862167 D 228405 CDS YP_759569.1 114798257 4287237 862787..863638 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460; HAD family hydrolase 863638 4287237 HNE_0842 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_759569.1 862787 D 228405 CDS YP_759570.1 114797881 4288671 863744..864175 1 NC_008358.1 identified by match to protein family HMM PF01575; MaoC domain-containing protein 864175 4288671 HNE_0843 Hyphomonas neptunium ATCC 15444 MaoC domain-containing protein YP_759570.1 863744 D 228405 CDS YP_759571.1 114799780 4289797 864175..865101 1 NC_008358.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 865101 ribF 4289797 ribF Hyphomonas neptunium ATCC 15444 riboflavin biosynthesis protein RibF YP_759571.1 864175 D 228405 CDS YP_759572.1 114799511 4288904 complement(865245..865976) 1 NC_008358.1 hypothetical protein 865976 4288904 HNE_0846 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759572.1 865245 R 228405 CDS YP_759573.1 114798708 4290436 865272..865823 1 NC_008358.1 hypothetical protein 865823 4290436 HNE_0845 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759573.1 865272 D 228405 CDS YP_759574.1 114800046 4289369 866096..866560 1 NC_008358.1 hypothetical protein 866560 4289369 HNE_0847 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759574.1 866096 D 228405 CDS YP_759575.1 114800154 4290487 complement(866600..866722) 1 NC_008358.1 hypothetical protein 866722 4290487 HNE_0848 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759575.1 866600 R 228405 CDS YP_759576.1 114797776 4289620 866764..869805 1 NC_008358.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00392; isoleucyl-tRNA synthetase 869805 ileS 4289620 ileS Hyphomonas neptunium ATCC 15444 isoleucyl-tRNA synthetase YP_759576.1 866764 D 228405 CDS YP_759577.1 114798762 4289827 869897..870433 1 NC_008358.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 870433 lspA1 4289827 lspA1 Hyphomonas neptunium ATCC 15444 signal peptidase II YP_759577.1 869897 D 228405 CDS YP_759578.1 114799408 4289545 870468..870965 1 NC_008358.1 identified by similarity to GB:AAK22684.1; putative lipoprotein 870965 4289545 HNE_0851 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759578.1 870468 D 228405 CDS YP_759579.1 114800347 4289281 871036..872394 1 NC_008358.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; insulinase family protein 872394 4289281 HNE_0852 Hyphomonas neptunium ATCC 15444 insulinase family protein YP_759579.1 871036 D 228405 CDS YP_759580.1 114797798 4288062 872394..873809 1 NC_008358.1 identified by match to protein family HMM PF05193; M16 family peptidase 873809 4288062 HNE_0853 Hyphomonas neptunium ATCC 15444 M16 family peptidase YP_759580.1 872394 D 228405 CDS YP_759581.1 114798794 4287777 complement(874144..875094) 1 NC_008358.1 identified by similarity to GB:AAK23431.1; hypothetical protein 875094 4287777 HNE_0854 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759581.1 874144 R 228405 CDS YP_759582.1 114799013 4287530 complement(875094..875705) 1 NC_008358.1 identified by match to protein family HMM PF01966; HD domain-containing protein 875705 4287530 HNE_0855 Hyphomonas neptunium ATCC 15444 HD domain-containing protein YP_759582.1 875094 R 228405 CDS YP_759583.1 114799853 4287435 875913..876062 1 NC_008358.1 hypothetical protein 876062 4287435 HNE_0856 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759583.1 875913 D 228405 CDS YP_759584.1 114797280 4290544 complement(876077..877198) 1 NC_008358.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 877198 4290544 HNE_0857 Hyphomonas neptunium ATCC 15444 3-oxoacyl-ACP synthase YP_759584.1 876077 R 228405 CDS YP_759585.1 114798297 4289461 complement(877327..877605) 1 NC_008358.1 identified by similarity to GB:AAR33517.1; hypothetical protein 877605 4289461 HNE_0858 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759585.1 877327 R 228405 CDS YP_759586.1 114797522 4289483 complement(877602..877805) 1 NC_008358.1 putative lipoprotein 877805 4289483 HNE_0859 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759586.1 877602 R 228405 CDS YP_759587.1 114798473 4288756 complement(877802..878383) 1 NC_008358.1 identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I 878383 tag 4288756 tag Hyphomonas neptunium ATCC 15444 DNA-3-methyladenine glycosylase I YP_759587.1 877802 R 228405 CDS YP_759588.1 114798165 4287654 complement(878376..879191) 1 NC_008358.1 identified by match to protein family HMM PF01571; putative aminomethyltransferase 879191 4287654 HNE_0861 Hyphomonas neptunium ATCC 15444 putative aminomethyltransferase YP_759588.1 878376 R 228405 CDS YP_759589.1 114799203 4289958 879289..880629 1 NC_008358.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 880629 4289958 HNE_0862 Hyphomonas neptunium ATCC 15444 dihydroorotase YP_759589.1 879289 D 228405 CDS YP_759590.1 114799838 4290146 880658..882073 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein 882073 4290146 HNE_0863 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759590.1 880658 D 228405 CDS YP_759591.1 114797749 4288286 882196..884064 1 NC_008358.1 catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 884064 fcs2 4288286 fcs2 Hyphomonas neptunium ATCC 15444 feruloyl-CoA synthase YP_759591.1 882196 D 228405 CDS YP_759592.1 114798777 4289842 884345..885892 1 NC_008358.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 885892 4289842 HNE_0865 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759592.1 884345 D 228405 CDS YP_759593.1 114799589 4289085 complement(885959..888049) 1 NC_008358.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07676; S9A/B/C family peptidase 888049 4289085 HNE_0866 Hyphomonas neptunium ATCC 15444 S9A/B/C family peptidase YP_759593.1 885959 R 228405 CDS YP_759594.1 114800358 4288721 complement(888225..888878) 1 NC_008358.1 identified by similarity to GB:AAQ65624.1; hypothetical protein 888878 4288721 HNE_0867 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759594.1 888225 R 228405 CDS YP_759595.1 114799997 4290212 complement(888863..889246) 1 NC_008358.1 hypothetical protein 889246 4290212 HNE_0868 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759595.1 888863 R 228405 CDS YP_759596.1 114798532 4288097 889593..891374 1 NC_008358.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 891374 4288097 HNE_0869 Hyphomonas neptunium ATCC 15444 ribonucleotide-diphosphate reductase subunit alpha YP_759596.1 889593 D 228405 CDS YP_759597.1 114797589 4286994 891722..892585 1 NC_008358.1 hypothetical protein 892585 4286994 HNE_0870 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759597.1 891722 D 228405 CDS YP_759598.1 114800400 4290344 complement(892661..893230) 1 NC_008358.1 identified by similarity to GB:AAK23529.1; match to protein family HMM PF01936; hypothetical protein 893230 4290344 HNE_0871 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759598.1 892661 R 228405 CDS YP_759599.1 114799587 4289083 893387..893737 1 NC_008358.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 893737 rpoZ 4289083 rpoZ Hyphomonas neptunium ATCC 15444 DNA-directed RNA polymerase subunit omega YP_759599.1 893387 D 228405 CDS YP_759600.1 114798559 4287403 893746..896013 1 NC_008358.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 896013 4287403 HNE_0873 Hyphomonas neptunium ATCC 15444 RelA/SpoT family protein YP_759600.1 893746 D 228405 CDS YP_759601.1 114797568 4287286 896003..896584 1 NC_008358.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 896584 pyrE 4287286 pyrE Hyphomonas neptunium ATCC 15444 orotate phosphoribosyltransferase YP_759601.1 896003 D 228405 CDS YP_759602.1 114799252 4289682 896584..897327 1 NC_008358.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 897327 pdxJ 4289682 pdxJ Hyphomonas neptunium ATCC 15444 pyridoxine 5'-phosphate synthase YP_759602.1 896584 D 228405 CDS YP_759603.1 114798027 4287182 897324..897737 1 NC_008358.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier-protein) synthase 897737 4287182 HNE_0876 Hyphomonas neptunium ATCC 15444 holo-(acyl-carrier-protein) synthase YP_759603.1 897324 D 228405 CDS YP_759604.1 114797101 4287968 897785..898489 1 NC_008358.1 identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 898489 rnc 4287968 rnc Hyphomonas neptunium ATCC 15444 ribonuclease III YP_759604.1 897785 D 228405 CDS YP_759605.1 114799800 4289817 898486..899433 1 NC_008358.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 899433 era 4289817 era Hyphomonas neptunium ATCC 15444 GTP-binding protein Era YP_759605.1 898486 D 228405 CDS YP_759606.1 114799258 4289688 899440..900171 1 NC_008358.1 identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 900171 recO 4289688 recO Hyphomonas neptunium ATCC 15444 DNA repair protein RecO YP_759606.1 899440 D 228405 CDS YP_759607.1 114800285 4287930 complement(900178..900864) 1 NC_008358.1 identified by match to protein family HMM PF06904; extensin domain-containing protein 900864 4287930 HNE_0880 Hyphomonas neptunium ATCC 15444 extensin domain-containing protein YP_759607.1 900178 R 228405 CDS YP_759608.1 114797721 4289236 900998..903232 1 NC_008358.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 903232 parC 4289236 parC Hyphomonas neptunium ATCC 15444 DNA topoisomerase IV subunit A YP_759608.1 900998 D 228405 CDS YP_759609.1 114798782 4287764 complement(903504..904253) 1 NC_008358.1 identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator 904253 4287764 HNE_0882 Hyphomonas neptunium ATCC 15444 Sir2 family transcriptional regulator YP_759609.1 903504 R 228405 CDS YP_759610.1 114798046 4289521 complement(904287..904757) 1 NC_008358.1 identified by similarity to GB:AAS71142.1; hypothetical protein 904757 4289521 HNE_0883 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759610.1 904287 R 228405 CDS YP_759611.1 114799505 4288898 904811..905146 1 NC_008358.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 905146 4288898 HNE_0884 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_759611.1 904811 D 228405 CDS YP_759612.1 114800041 4289364 complement(905143..905844) 1 NC_008358.1 identified by match to protein family HMM PF01988; hypothetical protein 905844 4289364 HNE_0885 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759612.1 905143 R 228405 CDS YP_759613.1 114797085 4287366 905991..906554 1 NC_008358.1 identified by match to protein family HMM PF04011; LemA family protein 906554 4287366 HNE_0886 Hyphomonas neptunium ATCC 15444 LemA family protein YP_759613.1 905991 D 228405 CDS YP_759614.1 114798880 4287571 906615..906968 1 NC_008358.1 putative lipoprotein 906968 4287571 HNE_0887 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759614.1 906615 D 228405 CDS YP_759615.1 114799958 4290113 907043..907678 1 NC_008358.1 putative lipoprotein 907678 4290113 HNE_0888 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759615.1 907043 D 228405 CDS YP_759616.1 114798381 4288373 complement(907685..908821) 1 NC_008358.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212; classes I and II aminotransferase 908821 4288373 HNE_0889 Hyphomonas neptunium ATCC 15444 classes I and II aminotransferase YP_759616.1 907685 R 228405 CDS YP_759617.1 114797782 4289626 complement(908840..910423) 1 NC_008358.1 identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; TRAP dicarboxylate transporter subunit DctM 910423 4289626 HNE_0890 Hyphomonas neptunium ATCC 15444 TRAP dicarboxylate transporter subunit DctM YP_759617.1 908840 R 228405 CDS YP_759618.1 114798395 4289736 complement(910413..911084) 1 NC_008358.1 identified by match to protein family HMM PF04290; TRAP dicarboxylate transporter subunit DctQ 911084 4289736 HNE_0891 Hyphomonas neptunium ATCC 15444 TRAP dicarboxylate transporter subunit DctQ YP_759618.1 910413 R 228405 CDS YP_759619.1 114797611 4288323 complement(911103..912212) 1 NC_008358.1 identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; solute-binding family 7 protein 912212 4288323 HNE_0892 Hyphomonas neptunium ATCC 15444 solute-binding family 7 protein YP_759619.1 911103 R 228405 CDS YP_759620.1 114799991 4290206 complement(912283..913041) 1 NC_008358.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 913041 ate 4290206 ate Hyphomonas neptunium ATCC 15444 arginyl-tRNA-protein transferase YP_759620.1 912283 R 228405 CDS YP_759621.1 114799250 4289680 complement(913147..913827) 1 NC_008358.1 identified by match to protein family HMM PF00691; putative chemotaxis protein MotB 913827 4289680 HNE_0894 Hyphomonas neptunium ATCC 15444 putative chemotaxis protein MotB YP_759621.1 913147 R 228405 CDS YP_759622.1 114797994 4289315 913961..914827 1 NC_008358.1 identified by similarity to SP:O33730; match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 914827 4289315 HNE_0895 Hyphomonas neptunium ATCC 15444 3-hydroxyisobutyrate dehydrogenase YP_759622.1 913961 D 228405 CDS YP_759623.1 114797056 4287024 914827..915840 1 NC_008358.1 identified by similarity to GB:AAS81418.1; match to protein family HMM PF04087; match to protein family HMM TIGR00341; hypothetical protein 915840 4287024 HNE_0896 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759623.1 914827 D 228405 CDS YP_759624.1 114797691 4287897 916005..916442 1 NC_008358.1 identified by match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 916442 4287897 HNE_0897 Hyphomonas neptunium ATCC 15444 FKBP-type peptidyl-prolyl cis-trans isomerase YP_759624.1 916005 D 228405 CDS YP_759625.1 114800380 4288743 complement(916471..917466) 1 NC_008358.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 917466 hemB 4288743 hemB Hyphomonas neptunium ATCC 15444 delta-aminolevulinic acid dehydratase YP_759625.1 916471 R 228405 CDS YP_759626.1 114799089 4287743 complement(917498..918103) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 918103 4287743 HNE_0899 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759626.1 917498 R 228405 CDS YP_759627.1 114800043 4289366 918103..919242 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 919242 acad8 4289366 acad8 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_759627.1 918103 D 228405 CDS YP_759628.1 114797103 4287970 complement(919253..920101) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 920101 4287970 HNE_0901 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759628.1 919253 R 228405 CDS YP_759629.1 114798042 4289517 920285..921253 1 NC_008358.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 921253 4289517 HNE_0902 Hyphomonas neptunium ATCC 15444 glycerophosphoryl diester phosphodiesterase family protein YP_759629.1 920285 D 228405 CDS YP_759630.1 114799562 4288547 921326..921715 1 NC_008358.1 identified by match to protein family HMM PF00042; globin domain-containing protein 921715 4288547 HNE_0903 Hyphomonas neptunium ATCC 15444 globin domain-containing protein YP_759630.1 921326 D 228405 CDS YP_759631.1 114800490 4289443 921754..922308 1 NC_008358.1 identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, b-type cytochrome subunit 922308 4289443 HNE_0904 Hyphomonas neptunium ATCC 15444 nickel-dependent hydrogenase, b-type cytochrome subunit YP_759631.1 921754 D 228405 CDS YP_759632.1 114797498 4289713 922391..923230 1 NC_008358.1 identified by match to protein family HMM PF02668; TauD/TfdA family dioxygenase 923230 4289713 HNE_0905 Hyphomonas neptunium ATCC 15444 TauD/TfdA family dioxygenase YP_759632.1 922391 D 228405 CDS YP_759633.1 114798468 4287703 complement(923259..923693) 1 NC_008358.1 identified by similarity to GB:AAN34286.1; hypothetical protein 923693 4287703 HNE_0906 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759633.1 923259 R 228405 CDS YP_759634.1 114799454 4289670 923676..924758 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 924758 4289670 HNE_0907 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_759634.1 923676 D 228405 CDS YP_759635.1 114800500 4289453 924794..925138 1 NC_008358.1 identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 925138 4289453 HNE_0908 Hyphomonas neptunium ATCC 15444 SMR family multidrug efflux pump YP_759635.1 924794 D 228405 CDS YP_759636.1 114797129 4287157 925389..925895 1 NC_008358.1 putative transcriptional regulatory protein 925895 4287157 HNE_0909 Hyphomonas neptunium ATCC 15444 putative transcriptional regulatory protein YP_759636.1 925389 D 228405 CDS YP_759637.1 114798741 4289304 926054..926563 1 NC_008358.1 identified by similarity to GB:AAN68336.1; match to protein family HMM PF07566; hypothetical protein 926563 4289304 HNE_0910 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759637.1 926054 D 228405 CDS YP_759638.1 114800226 4289000 926726..927391 1 NC_008358.1 hypothetical protein 927391 4289000 HNE_0911 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759638.1 926726 D 228405 CDS YP_759639.1 114797637 4289031 complement(927397..927954) 1 NC_008358.1 identified by match to protein family HMM PF00034; cytochrome c family protein 927954 4289031 HNE_0912 Hyphomonas neptunium ATCC 15444 cytochrome c family protein YP_759639.1 927397 R 228405 CDS YP_759640.1 114799039 4290517 928151..930055 1 NC_008358.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 930055 mutL 4290517 mutL Hyphomonas neptunium ATCC 15444 DNA mismatch repair protein YP_759640.1 928151 D 228405 CDS YP_759641.1 114800070 4289393 930139..931308 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 931308 4289393 HNE_0914 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_759641.1 930139 D 228405 CDS YP_759642.1 114800068 4289391 complement(931305..932672) 1 NC_008358.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 932672 4289391 HNE_0915 Hyphomonas neptunium ATCC 15444 endonuclease/exonuclease/phosphatase family protein YP_759642.1 931305 R 228405 CDS YP_759643.1 114797272 4290536 complement(932772..934175) 1 NC_008358.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD-binding oxidoreductase 934175 4290536 HNE_0916 Hyphomonas neptunium ATCC 15444 FAD-binding oxidoreductase YP_759643.1 932772 R 228405 CDS YP_759644.1 114798678 4289859 934529..934849 1 NC_008358.1 hypothetical protein 934849 4289859 HNE_0917 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759644.1 934529 D 228405 CDS YP_759645.1 114799502 4288895 complement(934938..935561) 1 NC_008358.1 identified by match to protein family HMM PF04299; putative FMN-binding protein 935561 4288895 HNE_0918 Hyphomonas neptunium ATCC 15444 putative FMN-binding protein YP_759645.1 934938 R 228405 CDS YP_759646.1 114799890 4290219 complement(935626..936954) 1 NC_008358.1 beta-lactamase family protein 936954 4290219 HNE_0919 Hyphomonas neptunium ATCC 15444 beta-lactamase family protein YP_759646.1 935626 R 228405 CDS YP_759647.1 114797378 4287309 complement(937061..938488) 1 NC_008358.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 938488 xseA 4287309 xseA Hyphomonas neptunium ATCC 15444 exodeoxyribonuclease VII large subunit YP_759647.1 937061 R 228405 CDS YP_759648.1 114798268 4287248 938709..939557 1 NC_008358.1 identified by similarity to SP:P64840; hypothetical protein 939557 4287248 HNE_0921 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759648.1 938709 D 228405 CDS YP_759649.1 114799064 4288963 939626..940918 1 NC_008358.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 940918 purD 4288963 purD Hyphomonas neptunium ATCC 15444 phosphoribosylamine--glycine ligase YP_759649.1 939626 D 228405 CDS YP_759650.1 114799375 4288846 complement(940915..941976) 1 NC_008358.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 941976 4288846 HNE_0923 Hyphomonas neptunium ATCC 15444 zinc-binding dehydrogenase family oxidoreductase YP_759650.1 940915 R 228405 CDS YP_759651.1 114800243 4287478 complement(942005..942793) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 942793 4287478 HNE_0924 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759651.1 942005 R 228405 CDS YP_759652.1 114798572 4289502 942756..943454 1 NC_008358.1 hypothetical protein 943454 4289502 HNE_0926 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759652.1 942756 D 228405 CDS YP_759653.1 114797832 4288776 complement(942807..943343) 1 NC_008358.1 hypothetical protein 943343 4288776 HNE_0925 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759653.1 942807 R 228405 CDS YP_759654.1 114797924 4287274 943521..944183 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 944183 4287274 HNE_0927 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_759654.1 943521 D 228405 CDS YP_759655.1 114798635 4289894 complement(944187..944435) 1 NC_008358.1 identified by similarity to GB:AAK24163.1; hypothetical protein 944435 4289894 HNE_0928 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759655.1 944187 R 228405 CDS YP_759656.1 114799794 4289811 complement(944488..945078) 1 NC_008358.1 identified by similarity to GB:AAM71598.1; hypothetical protein 945078 4289811 HNE_0929 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759656.1 944488 R 228405 CDS YP_759657.1 114797271 4290535 945193..946281 1 NC_008358.1 identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 946281 4290535 HNE_0930 Hyphomonas neptunium ATCC 15444 phosphotransferase enzyme family protein YP_759657.1 945193 D 228405 CDS YP_759658.1 114798199 4287823 946329..947519 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 947519 4287823 HNE_0931 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759658.1 946329 D 228405 CDS YP_759659.1 114799963 4290177 947564..948472 1 NC_008358.1 identified by similarity to GB:BAC47989.1; hypothetical protein 948472 4290177 HNE_0932 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759659.1 947564 D 228405 CDS YP_759660.1 114797427 4287164 948469..948828 1 NC_008358.1 identified by similarity to GB:AAK22977.1; hypothetical protein 948828 4287164 HNE_0933 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759660.1 948469 D 228405 CDS YP_759661.1 114798392 4288384 948889..950166 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 950166 4288384 HNE_0934 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_759661.1 948889 D 228405 CDS YP_759662.1 114799403 4289540 950290..951138 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family protein 951138 4289540 HNE_0935 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_759662.1 950290 D 228405 CDS YP_759663.1 114797759 4288217 complement(951142..952212) 1 NC_008358.1 identified by similarity to GB:AAK25051.1; hypothetical protein 952212 4288217 HNE_0936 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759663.1 951142 R 228405 CDS YP_759664.1 114797130 4288347 complement(952234..952977) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 952977 4288347 HNE_0937 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_759664.1 952234 R 228405 CDS YP_759665.1 114798104 4289599 complement(952974..954296) 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 954296 4289599 HNE_0938 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_759665.1 952974 R 228405 CDS YP_759666.1 114798162 4287651 complement(954375..955712) 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 955712 4287651 HNE_0939 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_759666.1 954375 R 228405 CDS YP_759667.1 114798538 4288103 complement(955746..956663) 1 NC_008358.1 identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase rsuA family protein 956663 4288103 HNE_0940 Hyphomonas neptunium ATCC 15444 pseudouridine synthase rsuA family protein YP_759667.1 955746 R 228405 CDS YP_759668.1 114797525 4289486 complement(956688..957089) 1 NC_008358.1 identified by similarity to GB:AAK22673.1; hypothetical protein 957089 4289486 HNE_0941 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759668.1 956688 R 228405 CDS YP_759669.1 114800519 4288864 957380..958327 1 NC_008358.1 flagellar biosynthesis protein FlhF-like protein 958327 4288864 HNE_0942 Hyphomonas neptunium ATCC 15444 flagellar biosynthesis protein FlhF-like protein YP_759669.1 957380 D 228405 CDS YP_759670.1 114799550 4288535 958332..959168 1 NC_008358.1 identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656; motR protein 959168 motR 4288535 motR Hyphomonas neptunium ATCC 15444 motR protein YP_759670.1 958332 D 228405 CDS YP_759671.1 114797249 4288447 959302..960015 1 NC_008358.1 identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator CtrA 960015 ctrA 4288447 ctrA Hyphomonas neptunium ATCC 15444 DNA-binding response regulator CtrA YP_759671.1 959302 D 228405 CDS YP_759672.1 114799775 4289792 complement(960110..960562) 1 NC_008358.1 identified by match to protein family HMM PF00075; ribonuclease H 960562 rnhA 4289792 rnhA Hyphomonas neptunium ATCC 15444 ribonuclease H YP_759672.1 960110 R 228405 CDS YP_759673.1 114800157 4290001 complement(960606..961124) 1 NC_008358.1 putative lipoprotein 961124 4290001 HNE_0946 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759673.1 960606 R 228405 CDS YP_759674.1 114798237 4288930 complement(961193..962179) 1 NC_008358.1 identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; homoserine kinase 962179 thrB 4288930 thrB Hyphomonas neptunium ATCC 15444 homoserine kinase YP_759674.1 961193 R 228405 CDS YP_759675.1 114798525 4290330 complement(962191..963690) 1 NC_008358.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 963690 4290330 HNE_0948 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759675.1 962191 R 228405 CDS YP_759676.1 114797089 4287370 complement(963728..965227) 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 965227 4287370 HNE_0949 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759676.1 963728 R 228405 CDS YP_759677.1 114800145 4290478 965497..967080 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 967080 4290478 HNE_0950 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_759677.1 965497 D 228405 CDS YP_759678.1 114799369 4288840 complement(967808..967906) 1 NC_008358.1 hypothetical protein 967906 4288840 HNE_0952 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759678.1 967808 R 228405 CDS YP_759679.1 114798256 4288949 complement(967971..968792) 1 NC_008358.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 968792 map1 4288949 map1 Hyphomonas neptunium ATCC 15444 methionine aminopeptidase YP_759679.1 967971 R 228405 CDS YP_759680.1 114797477 4288422 968911..970245 1 NC_008358.1 identified by match to protein family HMM PF00144; carboxylesterase 970245 4288422 HNE_0954 Hyphomonas neptunium ATCC 15444 carboxylesterase YP_759680.1 968911 D 228405 CDS YP_759681.1 114797094 4287961 970242..971000 1 NC_008358.1 identified by match to protein family HMM PF00994; molybdopterin-binding domain-containing protein 971000 4287961 HNE_0955 Hyphomonas neptunium ATCC 15444 molybdopterin-binding domain-containing protein YP_759681.1 970242 D 228405 CDS YP_759682.1 114799848 4290156 971099..971584 1 NC_008358.1 hypothetical protein 971584 4290156 HNE_0956 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759682.1 971099 D 228405 CDS YP_759683.1 114798582 4289512 971665..972447 1 NC_008358.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 972447 4289512 HNE_0957 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_759683.1 971665 D 228405 CDS YP_759684.1 114797833 4288777 complement(972493..973269) 1 NC_008358.1 identified by similarity to SP:Q7XA48; match to protein family HMM PF02900; extradiol-type ring-opening dioxygenase 973269 4288777 HNE_0958 Hyphomonas neptunium ATCC 15444 extradiol-type ring-opening dioxygenase YP_759684.1 972493 R 228405 CDS YP_759685.1 114799237 4288300 973446..974657 1 NC_008358.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 974657 bktB 4288300 bktB Hyphomonas neptunium ATCC 15444 acetyl-CoA acetyltransferase YP_759685.1 973446 D 228405 CDS YP_759686.1 114797581 4286986 974869..975078 1 NC_008358.1 identified by match to protein family HMM PF00313; cold shock protein 975078 4286986 HNE_0960 Hyphomonas neptunium ATCC 15444 cold shock protein YP_759686.1 974869 D 228405 CDS YP_759687.1 114797232 4287338 complement(975176..975871) 1 NC_008358.1 identified by similarity to GB:AAK23269.1; hypothetical protein 975871 4287338 HNE_0961 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759687.1 975176 R 228405 CDS YP_759688.1 114797982 4288345 complement(975967..977412) 1 NC_008358.1 identified by similarity to PRF:2211222A; match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein 977412 4288345 HNE_0962 Hyphomonas neptunium ATCC 15444 sodium:sulfate symporter family protein YP_759688.1 975967 R 228405 CDS YP_759689.1 114799642 4290282 977672..978865 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982; HPP family/CBS domain-containing protein 978865 4290282 HNE_0964 Hyphomonas neptunium ATCC 15444 HPP family/CBS domain-containing protein YP_759689.1 977672 D 228405 CDS YP_759690.1 114800457 4288199 complement(978966..979592) 1 NC_008358.1 identified by similarity to SP:P41407; match to protein family HMM PF02525; match to protein family HMM PF03358; acyl carrier protein phosphodiesterase 979592 4288199 HNE_0965 Hyphomonas neptunium ATCC 15444 acyl carrier protein phosphodiesterase YP_759690.1 978966 R 228405 CDS YP_759691.1 114797597 4288309 complement(979736..981010) 1 NC_008358.1 hypothetical protein 981010 4288309 HNE_0966 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759691.1 979736 R 228405 CDS YP_759692.1 114798384 4288376 980928..982763 1 NC_008358.1 identified by match to protein family HMM PF00512; histidine kinase A domain-containing protein 982763 4288376 HNE_0967 Hyphomonas neptunium ATCC 15444 histidine kinase A domain-containing protein YP_759692.1 980928 D 228405 CDS YP_759693.1 114797659 4288137 complement(982784..983650) 1 NC_008358.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin family protein 983650 4288137 HNE_0968 Hyphomonas neptunium ATCC 15444 pirin family protein YP_759693.1 982784 R 228405 CDS YP_759694.1 114799361 4288131 983736..983873 1 NC_008358.1 hypothetical protein 983873 4288131 HNE_0969 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759694.1 983736 D 228405 CDS YP_759695.1 114800195 4290039 983770..985080 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 985080 4290039 HNE_0970 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_759695.1 983770 D 228405 CDS YP_759696.1 114797819 4288472 complement(985203..986324) 1 NC_008358.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 986324 ald 4288472 ald Hyphomonas neptunium ATCC 15444 alanine dehydrogenase YP_759696.1 985203 R 228405 CDS YP_759697.1 114797157 4287616 986296..986505 1 NC_008358.1 hypothetical protein 986505 4287616 HNE_0972 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759697.1 986296 D 228405 CDS YP_759698.1 114799574 4288559 complement(986483..987148) 1 NC_008358.1 identified by similarity to GB:AAK24625.1; match to protein family HMM TIGR02001; hypothetical protein 987148 4288559 HNE_0973 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759698.1 986483 R 228405 CDS YP_759699.1 114799895 4290224 complement(987352..988164) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 988164 4290224 HNE_0974 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759699.1 987352 R 228405 CDS YP_759700.1 114799120 4289915 988303..988761 1 NC_008358.1 identified by match to protein family HMM PF04940; BLUF domain-containing protein 988761 4289915 HNE_0975 Hyphomonas neptunium ATCC 15444 BLUF domain-containing protein YP_759700.1 988303 D 228405 CDS YP_759701.1 114798323 4287106 complement(988841..990838) 1 NC_008358.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 990838 parE 4287106 parE Hyphomonas neptunium ATCC 15444 DNA topoisomerase IV subunit B YP_759701.1 988841 R 228405 CDS YP_759702.1 114797553 4287388 991154..993574 1 NC_008358.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 993574 lon 4287388 lon Hyphomonas neptunium ATCC 15444 ATP-dependent protease La YP_759702.1 991154 D 228405 CDS YP_759703.1 114800345 4289279 993902..994945 1 NC_008358.1 identified by similarity to GB:BAD78361.1; match to protein family HMM PF03724; hypothetical protein 994945 4289279 HNE_0979 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759703.1 993902 D 228405 CDS YP_759704.1 114799347 4288117 995032..996513 1 NC_008358.1 identified by match to protein family HMM PF00743; putative 4-hydroxyacetophenone monooxygenase 996513 4288117 HNE_0980 Hyphomonas neptunium ATCC 15444 putative 4-hydroxyacetophenone monooxygenase YP_759704.1 995032 D 228405 CDS YP_759705.1 114799557 4288542 complement(996564..997409) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 997409 4288542 HNE_0981 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_759705.1 996564 R 228405 CDS YP_759706.1 114798560 4287404 complement(997477..998487) 1 NC_008358.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 998487 gpsA 4287404 gpsA Hyphomonas neptunium ATCC 15444 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_759706.1 997477 R 228405 CDS YP_759707.1 114800084 4289967 998673..999278 1 NC_008358.1 identified by similarity to GB:AAK22621.1; hypothetical protein 999278 4289967 HNE_0983 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759707.1 998673 D 228405 CDS YP_759708.1 114797538 4287373 complement(999271..1000788) 1 NC_008358.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1000788 4287373 HNE_0984 Hyphomonas neptunium ATCC 15444 acetyl-CoA acetyltransferase YP_759708.1 999271 R 228405 CDS YP_759709.1 114798230 4288611 complement(1000907..1001905) 1 NC_008358.1 identified by similarity to SP:P22643; match to protein family HMM PF00561; haloalkane dehalogenase 1001905 dhlA 4288611 dhlA Hyphomonas neptunium ATCC 15444 haloalkane dehalogenase YP_759709.1 1000907 R 228405 CDS YP_759710.1 114797492 4289707 complement(1002012..1002659) 1 NC_008358.1 identified by match to protein family HMM PF01810; LysE family translocator protein 1002659 4289707 HNE_0986 Hyphomonas neptunium ATCC 15444 LysE family translocator protein YP_759710.1 1002012 R 228405 CDS YP_759711.1 114799700 4289118 complement(1002664..1003272) 1 NC_008358.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase 1003272 4289118 HNE_0987 Hyphomonas neptunium ATCC 15444 putative 2-hydroxychromene-2-carboxylate isomerase YP_759711.1 1002664 R 228405 CDS YP_759712.1 114798969 4287426 1003430..1004659 1 NC_008358.1 identified by match to protein family HMM PF01494; monooxygenase 1004659 4287426 HNE_0988 Hyphomonas neptunium ATCC 15444 monooxygenase YP_759712.1 1003430 D 228405 CDS YP_759713.1 114799099 4289198 1004664..1005026 1 NC_008358.1 hypothetical protein 1005026 4289198 HNE_0989 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759713.1 1004664 D 228405 CDS YP_759714.1 114799094 4289193 complement(1005055..1005777) 1 NC_008358.1 identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690; arsenical resistance protein ArsH 1005777 arsH 4289193 arsH Hyphomonas neptunium ATCC 15444 arsenical resistance protein ArsH YP_759714.1 1005055 R 228405 CDS YP_759715.1 114799478 4289169 complement(1005770..1006189) 1 NC_008358.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase 1006189 arsC 4289169 arsC Hyphomonas neptunium ATCC 15444 arsenate reductase YP_759715.1 1005770 R 228405 CDS YP_759716.1 114797435 4287172 complement(1006203..1007228) 1 NC_008358.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; putative arsenical-resistance protein 1007228 4287172 HNE_0992 Hyphomonas neptunium ATCC 15444 putative arsenical-resistance protein YP_759716.1 1006203 R 228405 CDS YP_759717.1 114797955 4289567 complement(1007299..1007637) 1 NC_008358.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1007637 4289567 HNE_0993 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_759717.1 1007299 R 228405 CDS YP_759718.1 114798715 4290443 1007756..1008850 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1008850 4290443 HNE_0994 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759718.1 1007756 D 228405 CDS YP_759719.1 114800002 4288794 1008892..1009065 1 NC_008358.1 hypothetical protein 1009065 4288794 HNE_0995 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759719.1 1008892 D 228405 CDS YP_759720.1 114800531 4288876 1009084..1009821 1 NC_008358.1 identified by similarity to GB:BAC48148.1; hypothetical protein 1009821 4288876 HNE_0996 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759720.1 1009084 D 228405 CDS YP_759721.1 114797575 4287293 complement(1009900..1010748) 1 NC_008358.1 identified by match to protein family HMM PF00582; universal stress protein family protein 1010748 4287293 HNE_0997 Hyphomonas neptunium ATCC 15444 universal stress protein family protein YP_759721.1 1009900 R 228405 CDS YP_759722.1 114798521 4290326 complement(1010761..1012251) 1 NC_008358.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate permease 1012251 4290326 HNE_0998 Hyphomonas neptunium ATCC 15444 sulfate permease YP_759722.1 1010761 R 228405 CDS YP_759723.1 114799079 4287733 complement(1012434..1012844) 1 NC_008358.1 hypothetical protein 1012844 4287733 HNE_0999 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759723.1 1012434 R 228405 CDS YP_759724.1 114797361 4287215 1013179..1013562 1 NC_008358.1 identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein 1013562 crcB 4287215 crcB Hyphomonas neptunium ATCC 15444 crcB protein YP_759724.1 1013179 D 228405 CDS YP_759725.1 114797120 4287148 1013559..1014608 1 NC_008358.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1014608 4287148 HNE_1002 Hyphomonas neptunium ATCC 15444 RluA family pseudouridine synthase YP_759725.1 1013559 D 228405 CDS YP_759726.1 114799903 4290233 1014611..1015324 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD family hydrolase 1015324 4290233 HNE_1003 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_759726.1 1014611 D 228405 CDS YP_759727.1 114799379 4288850 1015423..1015908 1 NC_008358.1 hypothetical protein 1015908 4288850 HNE_1004 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759727.1 1015423 D 228405 CDS YP_759728.1 114798619 4289878 1015972..1016700 1 NC_008358.1 identified by match to protein family HMM PF07542; ATP12 chaperone family protein 1016700 4289878 HNE_1005 Hyphomonas neptunium ATCC 15444 ATP12 chaperone family protein YP_759728.1 1015972 D 228405 CDS YP_759729.1 114798463 4287698 1016745..1017314 1 NC_008358.1 hypothetical protein 1017314 4287698 HNE_1006 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759729.1 1016745 D 228405 CDS YP_759730.1 114797686 4287892 1017471..1019003 1 NC_008358.1 identified by similarity to SP:P05166; match to protein family HMM PF01039; putative propionyl-CoA carboxylase subunit beta 1019003 4287892 HNE_1007 Hyphomonas neptunium ATCC 15444 putative propionyl-CoA carboxylase subunit beta YP_759730.1 1017471 D 228405 CDS YP_759731.1 114799091 4289190 1019149..1021233 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1021233 4289190 HNE_1008 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_759731.1 1019149 D 228405 CDS YP_759732.1 114798058 4289533 1021265..1022014 1 NC_008358.1 identified by similarity to GB:AAL94502.1; hypothetical protein 1022014 4289533 HNE_1009 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759732.1 1021265 D 228405 CDS YP_759733.1 114799196 4289951 1022167..1023126 1 NC_008358.1 hypothetical protein 1023126 4289951 HNE_1010 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759733.1 1022167 D 228405 CDS YP_759734.1 114799446 4289662 1023565..1024941 1 NC_008358.1 identified by similarity to GB:CAD31544.1; hypothetical protein 1024941 4289662 HNE_1011 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759734.1 1023565 D 228405 CDS YP_759735.1 114800242 4287477 1024954..1025727 1 NC_008358.1 identified by similarity to GB:CAD31543.1; hypothetical protein 1025727 4287477 HNE_1012 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759735.1 1024954 D 228405 CDS YP_759736.1 114797405 4287671 complement(1025764..1026210) 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1026210 4287671 HNE_1013 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_759736.1 1025764 R 228405 CDS YP_759737.1 114797468 4288413 1026338..1026997 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1026997 4288413 HNE_1014 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_759737.1 1026338 D 228405 CDS YP_759738.1 114798076 4287856 1026913..1027347 1 NC_008358.1 identified by similarity to GB:BAD58667.1; hypothetical protein 1027347 4287856 HNE_1015 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759738.1 1026913 D 228405 CDS YP_759739.1 114798857 4287821 1027360..1027842 1 NC_008358.1 identified by match to protein family HMM PF06983; 3-demethylubiquinone-9 3-methyltransferase 1027842 4287821 HNE_1016 Hyphomonas neptunium ATCC 15444 3-demethylubiquinone-9 3-methyltransferase YP_759739.1 1027360 D 228405 CDS YP_759740.1 114797808 4288072 1027839..1028048 1 NC_008358.1 identified by similarity to PIR:H95898; hypothetical protein 1028048 4288072 HNE_1017 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759740.1 1027839 D 228405 CDS YP_759741.1 114797829 4288482 1028077..1028571 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1028571 4288482 HNE_1018 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_759741.1 1028077 D 228405 CDS YP_759742.1 114798018 4290074 1028586..1029302 1 NC_008358.1 identified by similarity to GB:BAB54219.1; hypothetical protein 1029302 4290074 HNE_1019 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759742.1 1028586 D 228405 CDS YP_759743.1 114798934 4287878 1029563..1030441 1 NC_008358.1 identified by similarity to GB:AAL27289.1; putative outer membrane protein 1030441 4287878 HNE_1020 Hyphomonas neptunium ATCC 15444 putative outer membrane protein YP_759743.1 1029563 D 228405 CDS YP_759744.1 114799559 4288544 complement(1030514..1032376) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; polysaccharide biosynthesis protein 1032376 4288544 HNE_1021 Hyphomonas neptunium ATCC 15444 polysaccharide biosynthesis protein YP_759744.1 1030514 R 228405 CDS YP_759745.1 114800465 4288207 1032780..1033562 1 NC_008358.1 identified by match to protein family HMM PF04402; outer membrane protein 1033562 4288207 HNE_1023 Hyphomonas neptunium ATCC 15444 outer membrane protein YP_759745.1 1032780 D 228405 CDS YP_759746.1 114797510 4287639 complement(1033567..1034595) 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; KpsF/GutQ family sugar isomerase 1034595 4287639 HNE_1024 Hyphomonas neptunium ATCC 15444 KpsF/GutQ family sugar isomerase YP_759746.1 1033567 R 228405 CDS YP_759747.1 114799142 4287796 complement(1034657..1035985) 1 NC_008358.1 identified by match to protein family HMM PF00768; putative D-alanyl-D-alanine carboxypeptidase 1035985 4287796 HNE_1025 Hyphomonas neptunium ATCC 15444 putative D-alanyl-D-alanine carboxypeptidase YP_759747.1 1034657 R 228405 CDS YP_759748.1 114799945 4290100 1036224..1036640 1 NC_008358.1 identified by match to protein family HMM TIGR01985; phasin 1036640 4290100 HNE_1026 Hyphomonas neptunium ATCC 15444 phasin YP_759748.1 1036224 D 228405 CDS YP_759749.1 114797154 4287613 1036874..1038190 1 NC_008358.1 identified by match to protein family HMM PF07719; hypothetical protein 1038190 4287613 HNE_1027 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759749.1 1036874 D 228405 CDS YP_759750.1 114797951 4289563 1038225..1038626 1 NC_008358.1 identified by similarity to GB:AAV82008.1; hypothetical protein 1038626 4289563 HNE_1028 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759750.1 1038225 D 228405 CDS YP_759751.1 114799620 4290260 1038725..1039081 1 NC_008358.1 identified by match to protein family HMM PF02617; ATP-dependent Clp protease, adaptor protein ClpS 1039081 clpS 4290260 clpS Hyphomonas neptunium ATCC 15444 ATP-dependent Clp protease, adaptor protein ClpS YP_759751.1 1038725 D 228405 CDS YP_759752.1 114797928 4287902 1039139..1041454 1 NC_008358.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM TIGR02639; ATP-dependent Clp protease, ATP-binding subunit ClpA 1041454 clpA 4287902 clpA Hyphomonas neptunium ATCC 15444 ATP-dependent Clp protease, ATP-binding subunit ClpA YP_759752.1 1039139 D 228405 CDS YP_759753.1 114800004 4288796 1041587..1042789 1 NC_008358.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 1042789 4288796 HNE_1031 Hyphomonas neptunium ATCC 15444 putative esterase YP_759753.1 1041587 D 228405 CDS YP_759754.1 114799201 4289956 complement(1042786..1043181) 1 NC_008358.1 identified by similarity to GB:AAN62225.1; hypothetical protein 1043181 4289956 HNE_1032 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759754.1 1042786 R 228405 CDS YP_759755.1 114799605 4289101 complement(1043222..1043596) 1 NC_008358.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 1043596 4289101 HNE_1033 Hyphomonas neptunium ATCC 15444 rhodanese domain-containing protein YP_759755.1 1043222 R 228405 CDS YP_759756.1 114798375 4288367 complement(1043633..1045036) 1 NC_008358.1 identified by similarity to SP:P46473; match to protein family HMM PF01523; TldD protein 1045036 tldD 4288367 tldD Hyphomonas neptunium ATCC 15444 TldD protein YP_759756.1 1043633 R 228405 CDS YP_759757.1 114797233 4287339 complement(1045089..1045685) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1045685 4287339 HNE_1035 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_759757.1 1045089 R 228405 CDS YP_759758.1 114800536 4288881 1045839..1046594 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1046594 4288881 HNE_1036 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759758.1 1045839 D 228405 CDS YP_759759.1 114799231 4288294 complement(1046691..1047242) 1 NC_008358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1047242 4288294 HNE_1037 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759759.1 1046691 R 228405 CDS YP_759760.1 114798124 4287592 1047395..1048363 1 NC_008358.1 identified by similarity to SP:P08306; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866; cytochrome c oxidase subunit II 1048363 coxB 4287592 coxB Hyphomonas neptunium ATCC 15444 cytochrome c oxidase subunit II YP_759760.1 1047395 D 228405 CDS YP_759761.1 114799015 4287532 1048387..1050075 1 NC_008358.1 identified by similarity to SP:P31833; match to protein family HMM PF00115; match to protein family HMM TIGR02891; cytochrome c oxidase subunit I 1050075 4287532 HNE_1039 Hyphomonas neptunium ATCC 15444 cytochrome c oxidase subunit I YP_759761.1 1048387 D 228405 CDS YP_759762.1 114798218 4288599 1050186..1051142 1 NC_008358.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1051142 cyoE 4288599 cyoE Hyphomonas neptunium ATCC 15444 protoheme IX farnesyltransferase YP_759762.1 1050186 D 228405 CDS YP_759763.1 114800186 4290030 1051144..1051317 1 NC_008358.1 hypothetical protein 1051317 4290030 HNE_1041 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759763.1 1051144 D 228405 CDS YP_759764.1 114799995 4290210 1051317..1051934 1 NC_008358.1 identified by match to protein family HMM PF04442; cytochrome c oxidase assembly protein 1051934 4290210 HNE_1042 Hyphomonas neptunium ATCC 15444 cytochrome c oxidase assembly protein YP_759764.1 1051317 D 228405 CDS YP_759765.1 114797213 4289930 1052011..1052889 1 NC_008358.1 identified by similarity to SP:P06030; match to protein family HMM PF00510; cytochrome c oxidase subunit III 1052889 4289930 HNE_1043 Hyphomonas neptunium ATCC 15444 cytochrome c oxidase subunit III YP_759765.1 1052011 D 228405 CDS YP_759766.1 114797935 4287909 1053032..1053712 1 NC_008358.1 identified by similarity to PIR:C83632; hypothetical protein 1053712 4287909 HNE_1044 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759766.1 1053032 D 228405 CDS YP_759767.1 114799665 4288687 1053709..1055091 1 NC_008358.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260; threonine synthase 1055091 thrC 4288687 thrC Hyphomonas neptunium ATCC 15444 threonine synthase YP_759767.1 1053709 D 228405 CDS YP_759768.1 114800424 4290368 1055102..1055671 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1055671 4290368 HNE_1046 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759768.1 1055102 D 228405 CDS YP_759769.1 114799639 4290279 1055822..1056715 1 NC_008358.1 identified by match to protein family HMM PF00563; EAL domain-containing protein 1056715 4290279 HNE_1047 Hyphomonas neptunium ATCC 15444 EAL domain-containing protein YP_759769.1 1055822 D 228405 CDS YP_759770.1 114800284 4287929 1056721..1057299 1 NC_008358.1 identified by similarity to SP:P45941; hypothetical protein 1057299 4287929 HNE_1048 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759770.1 1056721 D 228405 CDS YP_759771.1 114797613 4288325 complement(1057306..1057872) 1 NC_008358.1 identified by similarity to SP:Q9A311; match to protein family HMM PF02622; hypothetical protein 1057872 4288325 HNE_1049 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759771.1 1057306 R 228405 CDS YP_759772.1 114798455 4287690 complement(1057937..1059007) 1 NC_008358.1 identified by match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein 1059007 4287690 HNE_1050 Hyphomonas neptunium ATCC 15444 PepSY-associated TM helix domain-containing protein YP_759772.1 1057937 R 228405 CDS YP_759773.1 114797488 4289703 complement(1059013..1061328) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB dependent receptor 1061328 4289703 HNE_1051 Hyphomonas neptunium ATCC 15444 TonB dependent receptor YP_759773.1 1059013 R 228405 CDS YP_759774.1 114800089 4289972 1061404..1061886 1 NC_008358.1 identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 1061886 4289972 HNE_1052 Hyphomonas neptunium ATCC 15444 anti-oxidant AhpCTSA family protein YP_759774.1 1061404 D 228405 CDS YP_759775.1 114799116 4289911 1062038..1063003 1 NC_008358.1 identified by match to protein family HMM PF01145; HflC/HflK family protein 1063003 4289911 HNE_1053 Hyphomonas neptunium ATCC 15444 HflC/HflK family protein YP_759775.1 1062038 D 228405 CDS YP_759776.1 114799456 4289672 1063030..1063494 1 NC_008358.1 identified by match to protein family HMM PF01957; nodulation efficiency protein D family protein 1063494 4289672 HNE_1054 Hyphomonas neptunium ATCC 15444 nodulation efficiency protein D family protein YP_759776.1 1063030 D 228405 CDS YP_759777.1 114798440 4290302 complement(1063614..1064480) 1 NC_008358.1 hypothetical protein 1064480 4290302 HNE_1055 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759777.1 1063614 R 228405 CDS YP_759778.1 114797915 4287265 complement(1064543..1065469) 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 1065469 4287265 HNE_1056 Hyphomonas neptunium ATCC 15444 ISHne3, transposase YP_759778.1 1064543 R 228405 CDS YP_759779.1 114799828 4290136 complement(1065676..1066896) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 1066896 4290136 HNE_1057 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_759779.1 1065676 R 228405 CDS YP_759780.1 114799012 4287529 1067060..1069066 1 NC_008358.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; carbamoyl-phosphate synthase L chain/biotin carboxylase 1069066 4287529 HNE_1058 Hyphomonas neptunium ATCC 15444 carbamoyl-phosphate synthase L chain/biotin carboxylase YP_759780.1 1067060 D 228405 CDS YP_759781.1 114799833 4290141 1069247..1069669 1 NC_008358.1 identified by similarity to GB:AAM36135.1; match to protein family HMM PF05656; hypothetical protein 1069669 4290141 HNE_1059 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759781.1 1069247 D 228405 CDS YP_759782.1 114799192 4289947 1069904..1070347 1 NC_008358.1 hypothetical protein 1070347 4289947 HNE_1060 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759782.1 1069904 D 228405 CDS YP_759783.1 114800321 4289255 1070365..1071147 1 NC_008358.1 hypothetical protein 1071147 4289255 HNE_1061 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759783.1 1070365 D 228405 CDS YP_759784.1 114800027 4288819 complement(1071345..1072049) 1 NC_008358.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 1072049 lipB 4288819 lipB Hyphomonas neptunium ATCC 15444 lipoate-protein ligase B YP_759784.1 1071345 R 228405 CDS YP_759785.1 114797853 4287123 complement(1072317..1073087) 1 NC_008358.1 identified by match to protein family HMM PF01925; hypothetical protein 1073087 4287123 HNE_1064 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759785.1 1072317 R 228405 CDS YP_759786.1 114798606 4290509 complement(1073084..1073569) 1 NC_008358.1 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 1073569 moaC1 4290509 moaC1 Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein C YP_759786.1 1073084 R 228405 CDS YP_759787.1 114799410 4289547 complement(1073574..1074104) 1 NC_008358.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 1074104 moaB1 4289547 moaB1 Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein B YP_759787.1 1073574 R 228405 CDS YP_759788.1 114800184 4290028 complement(1074111..1074572) 1 NC_008358.1 identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 1074572 moaE1 4290028 moaE1 Hyphomonas neptunium ATCC 15444 molybdopterin converting factor subunit 2 YP_759788.1 1074111 R 228405 CDS YP_759789.1 114799467 4290048 complement(1074577..1074825) 1 NC_008358.1 identified by match to protein family HMM PF02597; putative molybdopterin converting factor subunit 1 1074825 4290048 HNE_1068 Hyphomonas neptunium ATCC 15444 putative molybdopterin converting factor subunit 1 YP_759789.1 1074577 R 228405 CDS YP_759790.1 114800233 4289007 complement(1074829..1075860) 1 NC_008358.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein MoaA 1075860 moaA1 4289007 moaA1 Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein MoaA YP_759790.1 1074829 R 228405 CDS YP_759791.1 114800035 4288827 complement(1075853..1077394) 1 NC_008358.1 identified by match to protein family HMM PF02625; putative xanthine dehydrogenase accessory factor 1077394 4288827 HNE_1070 Hyphomonas neptunium ATCC 15444 putative xanthine dehydrogenase accessory factor YP_759791.1 1075853 R 228405 CDS YP_759792.1 114797284 4290548 complement(1077391..1079586) 1 NC_008358.1 identified by similarity to SP:P77489; match to protein family HMM PF01315; match to protein family HMM PF02738; putative xanthine dehydrogenase, molybdenum-binding subunit 1079586 4290548 HNE_1071 Hyphomonas neptunium ATCC 15444 putative xanthine dehydrogenase, molybdenum-binding subunit YP_759792.1 1077391 R 228405 CDS YP_759793.1 114799713 4289131 complement(1079590..1080540) 1 NC_008358.1 identified by similarity to SP:P77324; match to protein family HMM PF00941; putative xanthine dehydrogenase, FAD-binding subunit 1080540 4289131 HNE_1072 Hyphomonas neptunium ATCC 15444 putative xanthine dehydrogenase, FAD-binding subunit YP_759793.1 1079590 R 228405 CDS YP_759794.1 114797803 4288067 complement(1080540..1081190) 1 NC_008358.1 identified by similarity to SP:P77165; match to protein family HMM PF00111; match to protein family HMM PF01799; putative xanthine dehydrogenase, iron-sulfur binding subunit 1081190 4288067 HNE_1073 Hyphomonas neptunium ATCC 15444 putative xanthine dehydrogenase, iron-sulfur binding subunit YP_759794.1 1080540 R 228405 CDS YP_759795.1 114798789 4287771 complement(1081472..1082521) 1 NC_008358.1 identified by match to protein family HMM PF01594; hypothetical protein 1082521 4287771 HNE_1074 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759795.1 1081472 R 228405 CDS YP_759796.1 114799641 4290281 complement(1082606..1083232) 1 NC_008358.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; PfpI family intracellular peptidase 1083232 4290281 HNE_1075 Hyphomonas neptunium ATCC 15444 PfpI family intracellular peptidase YP_759796.1 1082606 R 228405 CDS YP_759797.1 114799364 4288835 1083212..1083409 1 NC_008358.1 hypothetical protein 1083409 4288835 HNE_1076 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759797.1 1083212 D 228405 CDS YP_759798.1 114800141 4290474 1083581..1084972 1 NC_008358.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1084972 4290474 HNE_1077 Hyphomonas neptunium ATCC 15444 isopropylmalate isomerase large subunit YP_759798.1 1083581 D 228405 CDS YP_759799.1 114799245 4289675 1084972..1085595 1 NC_008358.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 1085595 leuD2 4289675 leuD2 Hyphomonas neptunium ATCC 15444 3-isopropylmalate dehydratase small subunit YP_759799.1 1084972 D 228405 CDS YP_759800.1 114797996 4289317 complement(1085580..1086785) 1 NC_008358.1 identified by match to protein family HMM PF02515; L-carnitine dehydratase 1086785 4289317 HNE_1079 Hyphomonas neptunium ATCC 15444 L-carnitine dehydratase YP_759800.1 1085580 R 228405 CDS YP_759801.1 114797911 4287261 1086898..1087848 1 NC_008358.1 identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682; putative hydroxymethylglutaryl-CoA lyase 1087848 4287261 HNE_1080 Hyphomonas neptunium ATCC 15444 putative hydroxymethylglutaryl-CoA lyase YP_759801.1 1086898 D 228405 CDS YP_759802.1 114798589 4290492 1087864..1089312 1 NC_008358.1 identified by similarity to GB:AAL58394.1; match to protein family HMM PF00474; cation/acetate symporter ActP 1089312 4290492 HNE_1081 Hyphomonas neptunium ATCC 15444 cation/acetate symporter ActP YP_759802.1 1087864 D 228405 CDS YP_759803.1 114800160 4290004 1089359..1090261 1 NC_008358.1 identified by similarity to PIR:S75692; putative lipoprotein 1090261 4290004 HNE_1082 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759803.1 1089359 D 228405 CDS YP_759804.1 114797814 4288467 complement(1090334..1090840) 1 NC_008358.1 identified by similarity to PIR:AE2432; hypothetical protein 1090840 4288467 HNE_1083 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759804.1 1090334 R 228405 CDS YP_759805.1 114799619 4290259 1091023..1093479 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1093479 4290259 HNE_1084 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_759805.1 1091023 D 228405 CDS YP_759806.1 114800341 4289275 1093723..1095294 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1095294 4289275 HNE_1085 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759806.1 1093723 D 228405 CDS YP_759807.1 114800382 4288745 complement(1095283..1096086) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1096086 4288745 HNE_1086 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_759807.1 1095283 R 228405 CDS YP_759808.1 114798224 4288605 complement(1096086..1097099) 1 NC_008358.1 identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase 1097099 4288605 HNE_1087 Hyphomonas neptunium ATCC 15444 L4BD family NADP-dependent oxidoreductase YP_759808.1 1096086 R 228405 CDS YP_759809.1 114799996 4290211 complement(1097096..1098025) 1 NC_008358.1 hypothetical protein 1098025 4290211 HNE_1088 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759809.1 1097096 R 228405 CDS YP_759810.1 114797660 4288138 1098073..1098369 1 NC_008358.1 identified by similarity to GB:BAC53275.1; match to protein family HMM PF07045; hypothetical protein 1098369 4288138 HNE_1089 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759810.1 1098073 D 228405 CDS YP_759811.1 114798775 4289840 1098366..1099202 1 NC_008358.1 putative lipoprotein 1099202 4289840 HNE_1090 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759811.1 1098366 D 228405 CDS YP_759812.1 114799326 4290160 complement(1099212..1099577) 1 NC_008358.1 hypothetical protein 1099577 4290160 HNE_1091 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759812.1 1099212 R 228405 CDS YP_759813.1 114797214 4289931 complement(1099581..1100846) 1 NC_008358.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; UbiE/COQ5 family methlytransferase 1100846 4289931 HNE_1092 Hyphomonas neptunium ATCC 15444 UbiE/COQ5 family methlytransferase YP_759813.1 1099581 R 228405 CDS YP_759814.1 114798882 4287573 1100942..1101256 1 NC_008358.1 hypothetical protein 1101256 4287573 HNE_1093 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759814.1 1100942 D 228405 CDS YP_759815.1 114798746 4287981 1101267..1102103 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1102103 4287981 HNE_1094 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759815.1 1101267 D 228405 CDS YP_759816.1 114798577 4289507 1102100..1103008 1 NC_008358.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1103008 4289507 HNE_1095 Hyphomonas neptunium ATCC 15444 polysaccharide deacetylase family protein YP_759816.1 1102100 D 228405 CDS YP_759817.1 114797744 4288281 1103031..1103642 1 NC_008358.1 hypothetical protein 1103642 4288281 HNE_1096 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759817.1 1103031 D 228405 CDS YP_759818.1 114800301 4287946 1103731..1104555 1 NC_008358.1 identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein 1104555 4287946 HNE_1097 Hyphomonas neptunium ATCC 15444 HpcH/HpaI aldolase/citrate lyase family protein YP_759818.1 1103731 D 228405 CDS YP_759819.1 114799274 4288589 1104497..1105093 1 NC_008358.1 identified by match to protein family HMM PF01575; MaoC domain-containing protein 1105093 4288589 HNE_1098 Hyphomonas neptunium ATCC 15444 MaoC domain-containing protein YP_759819.1 1104497 D 228405 CDS YP_759820.1 114799465 4290046 1105129..1106319 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1106319 4290046 HNE_1099 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_759820.1 1105129 D 228405 CDS YP_759821.1 114799131 4287785 1106351..1107499 1 NC_008358.1 identified by match to protein family HMM PF02515; CaiB/BaiF family protein 1107499 4287785 HNE_1100 Hyphomonas neptunium ATCC 15444 CaiB/BaiF family protein YP_759821.1 1106351 D 228405 CDS YP_759822.1 114798181 4287999 1107499..1107933 1 NC_008358.1 identified by similarity to PIR:AE2432; hypothetical protein 1107933 4287999 HNE_1101 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759822.1 1107499 D 228405 CDS YP_759823.1 114799441 4289657 complement(1107938..1108642) 1 NC_008358.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1108642 4289657 HNE_1102 Hyphomonas neptunium ATCC 15444 GntR family transcriptional regulator YP_759823.1 1107938 R 228405 CDS YP_759824.1 114799908 4290238 1108826..1110133 1 NC_008358.1 identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1110133 4290238 HNE_1103 Hyphomonas neptunium ATCC 15444 MmgE/PrpD family protein YP_759824.1 1108826 D 228405 CDS YP_759825.1 114797367 4287298 1110187..1111500 1 NC_008358.1 identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1111500 4287298 HNE_1104 Hyphomonas neptunium ATCC 15444 MmgE/PrpD family protein YP_759825.1 1110187 D 228405 CDS YP_759826.1 114797886 4288074 1111553..1112902 1 NC_008358.1 putative aerobic phenylacetate-CoA ligase 1112902 4288074 HNE_1105 Hyphomonas neptunium ATCC 15444 putative aerobic phenylacetate-CoA ligase YP_759826.1 1111553 D 228405 CDS YP_759827.1 114799088 4287742 1112899..1114185 1 NC_008358.1 identified by match to protein family HMM PF01425; glutamyl-tRNA (Gln) amidotransferase subunit A 1114185 gattA 4287742 gattA Hyphomonas neptunium ATCC 15444 glutamyl-tRNA (Gln) amidotransferase subunit A YP_759827.1 1112899 D 228405 CDS YP_759828.1 114798668 4289849 complement(1114176..1114958) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 1114958 4289849 HNE_1107 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_759828.1 1114176 R 228405 CDS YP_759829.1 114799768 4288052 complement(1114955..1116382) 1 NC_008358.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 1116382 4288052 HNE_1108 Hyphomonas neptunium ATCC 15444 aldehyde dehydrogenase family protein YP_759829.1 1114955 R 228405 CDS YP_759830.1 114797514 4287644 complement(1116379..1117959) 1 NC_008358.1 identified by match to protein family HMM PF01565; putative oxidoreductase, FAD-binding 1117959 4287644 HNE_1109 Hyphomonas neptunium ATCC 15444 putative oxidoreductase, FAD-binding YP_759830.1 1116379 R 228405 CDS YP_759831.1 114798507 4287760 complement(1117978..1118634) 1 NC_008358.1 hypothetical protein 1118634 4287760 HNE_1110 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759831.1 1117978 R 228405 CDS YP_759832.1 114798258 4287238 complement(1118697..1119494) 1 NC_008358.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 1119494 4287238 HNE_1111 Hyphomonas neptunium ATCC 15444 GntR family transcriptional regulator YP_759832.1 1118697 R 228405 CDS YP_759833.1 114798393 4289734 1119653..1120474 1 NC_008358.1 identified by similarity to GB:CAB59714.1; putative lipoprotein 1120474 4289734 HNE_1112 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759833.1 1119653 D 228405 CDS YP_759834.1 114799416 4289553 complement(1120494..1121624) 1 NC_008358.1 identified by match to protein family HMM PF00795; match to protein family HMM TIGR01409; carbon-nitrogen family hydrolase 1121624 4289553 HNE_1113 Hyphomonas neptunium ATCC 15444 carbon-nitrogen family hydrolase YP_759834.1 1120494 R 228405 CDS YP_759835.1 114799839 4290147 complement(1121621..1122532) 1 NC_008358.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1122532 4290147 HNE_1114 Hyphomonas neptunium ATCC 15444 polysaccharide deacetylase family protein YP_759835.1 1121621 R 228405 CDS YP_759836.1 114797918 4287268 complement(1122516..1123463) 1 NC_008358.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1123463 4287268 HNE_1115 Hyphomonas neptunium ATCC 15444 polysaccharide deacetylase family protein YP_759836.1 1122516 R 228405 CDS YP_759837.1 114798038 4287193 complement(1123460..1124131) 1 NC_008358.1 identified by match to protein family HMM PF00857; isochorismatase family protein 1124131 4287193 HNE_1116 Hyphomonas neptunium ATCC 15444 isochorismatase family protein YP_759837.1 1123460 R 228405 CDS YP_759838.1 114799050 4290528 1124461..1126641 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1126641 4290528 HNE_1117 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_759838.1 1124461 D 228405 CDS YP_759839.1 114799942 4290097 complement(1126727..1128121) 1 NC_008358.1 identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE 1128121 rhlE 4290097 rhlE Hyphomonas neptunium ATCC 15444 ATP-dependent RNA helicase RhlE YP_759839.1 1126727 R 228405 CDS YP_759840.1 114797423 4287160 complement(1128385..1129191) 1 NC_008358.1 identified by similarity to GB:CAH34042.1; hypothetical protein 1129191 4287160 HNE_1119 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759840.1 1128385 R 228405 CDS YP_759841.1 114798154 4290387 1129275..1130195 1 NC_008358.1 identified by match to protein family HMM PF00487; fatty acid desaturase family protein 1130195 4290387 HNE_1120 Hyphomonas neptunium ATCC 15444 fatty acid desaturase family protein YP_759841.1 1129275 D 228405 CDS YP_759842.1 114797136 4288353 1130511..1131551 1 NC_008358.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 1131551 4288353 HNE_1121 Hyphomonas neptunium ATCC 15444 LacI family transcriptional regulator YP_759842.1 1130511 D 228405 CDS YP_759843.1 114798036 4287191 1131719..1134553 1 NC_008358.1 putative phosphoenolpyruvate carboxylase 1134553 4287191 HNE_1122 Hyphomonas neptunium ATCC 15444 putative phosphoenolpyruvate carboxylase YP_759843.1 1131719 D 228405 CDS YP_759844.1 114800444 4288186 1134768..1135748 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1135748 4288186 HNE_1123 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_759844.1 1134768 D 228405 CDS YP_759845.1 114799119 4289914 1136897..1138000 1 NC_008358.1 identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 1138000 hisC 4289914 hisC Hyphomonas neptunium ATCC 15444 histidinol-phosphate aminotransferase YP_759845.1 1136897 D 228405 CDS YP_759846.1 114798508 4287761 complement(1137984..1138865) 1 NC_008358.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1138865 panC 4287761 panC Hyphomonas neptunium ATCC 15444 pantoate--beta-alanine ligase YP_759846.1 1137984 R 228405 CDS YP_759847.1 114800100 4289983 1138933..1139412 1 NC_008358.1 hypothetical protein 1139412 4289983 HNE_1127 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759847.1 1138933 D 228405 CDS YP_759848.1 114797107 4287974 1139474..1140361 1 NC_008358.1 identified by similarity to GB:AAK24136.1; hypothetical protein 1140361 4287974 HNE_1128 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759848.1 1139474 D 228405 CDS YP_759849.1 114800442 4288184 1140464..1141603 1 NC_008358.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 1141603 4288184 HNE_1129 Hyphomonas neptunium ATCC 15444 putative esterase YP_759849.1 1140464 D 228405 CDS YP_759850.1 114799701 4289119 1141651..1142790 1 NC_008358.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1142790 tgt 4289119 tgt Hyphomonas neptunium ATCC 15444 queuine tRNA-ribosyltransferase YP_759850.1 1141651 D 228405 CDS YP_759851.1 114798957 4287414 complement(1142868..1143353) 1 NC_008358.1 identified by similarity to GB:AAK23568.1; hypothetical protein 1143353 4287414 HNE_1131 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759851.1 1142868 R 228405 CDS YP_759852.1 114798178 4287667 complement(1143719..1144072) 1 NC_008358.1 identified by similarity to PIR:AG2064; hypothetical protein 1144072 4287667 HNE_1133 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759852.1 1143719 R 228405 CDS YP_759853.1 114797450 4288570 complement(1144302..1145477) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 1145477 4288570 HNE_1134 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_759853.1 1144302 R 228405 CDS YP_759854.1 114799307 4287316 1145575..1146339 1 NC_008358.1 identified by similarity to SP:P54303; match to protein family HMM PF00196; LuxR family transcriptional regulator 1146339 4287316 HNE_1135 Hyphomonas neptunium ATCC 15444 LuxR family transcriptional regulator YP_759854.1 1145575 D 228405 CDS YP_759855.1 114799440 4289656 complement(1146377..1147786) 1 NC_008358.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; putative UDP-N-acetylmuramate--L-alanine ligase 1147786 4289656 HNE_1136 Hyphomonas neptunium ATCC 15444 putative UDP-N-acetylmuramate--L-alanine ligase YP_759855.1 1146377 R 228405 CDS YP_759856.1 114798662 4290408 1148422..1149261 1 NC_008358.1 identified by match to protein family HMM PF02016; LD-carboxypeptidase family protein 1149261 4290408 HNE_1137 Hyphomonas neptunium ATCC 15444 LD-carboxypeptidase family protein YP_759856.1 1148422 D 228405 CDS YP_759857.1 114797248 4288446 complement(1149318..1150736) 1 NC_008358.1 identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta 1150736 pntB 4288446 pntB Hyphomonas neptunium ATCC 15444 NAD(P) transhydrogenase subunit beta YP_759857.1 1149318 R 228405 CDS YP_759858.1 114799782 4289799 complement(1150739..1151110) 1 NC_008358.1 identified by similarity to SP:Q59764; NAD(P) transhydrogenase subunit alpha part 2 1151110 pntAB 4289799 pntAB Hyphomonas neptunium ATCC 15444 NAD(P) transhydrogenase subunit alpha part 2 YP_759858.1 1150739 R 228405 CDS YP_759859.1 114799994 4290209 complement(1151107..1152222) 1 NC_008358.1 identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222; NAD(P) transhydrogenase subunit alpha part 1 1152222 pntAA 4290209 pntAA Hyphomonas neptunium ATCC 15444 NAD(P) transhydrogenase subunit alpha part 1 YP_759859.1 1151107 R 228405 CDS YP_759860.1 114798986 4288262 1152294..1153061 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1153061 4288262 HNE_1141 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_759860.1 1152294 D 228405 CDS YP_759861.1 114800171 4290015 1153445..1155346 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 1155346 4290015 HNE_1142 Hyphomonas neptunium ATCC 15444 putative TonB-dependent receptor YP_759861.1 1153445 D 228405 CDS YP_759862.1 114799155 4287007 1155373..1156155 1 NC_008358.1 iron compound ABC transporter periplasmic substrate-binding protein 1156155 4287007 HNE_1143 Hyphomonas neptunium ATCC 15444 iron compound ABC transporter periplasmic substrate-binding protein YP_759862.1 1155373 D 228405 CDS YP_759863.1 114798623 4289882 1156152..1157135 1 NC_008358.1 identified by similarity to GB:AAD37494.1; match to protein family HMM PF01032; iron compound ABC transporter permease 1157135 4289882 HNE_1144 Hyphomonas neptunium ATCC 15444 iron compound ABC transporter permease YP_759863.1 1156152 D 228405 CDS YP_759864.1 114797669 4288147 1157132..1157881 1 NC_008358.1 identified by similarity to SP:P15031; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1157881 4288147 HNE_1145 Hyphomonas neptunium ATCC 15444 iron compound ABC transporter ATP-binding protein YP_759864.1 1157132 D 228405 CDS YP_759865.1 114800025 4288817 1157929..1158231 1 NC_008358.1 hypothetical protein 1158231 4288817 HNE_1146 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759865.1 1157929 D 228405 CDS YP_759866.1 114799246 4289676 1158315..1159187 1 NC_008358.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1159187 galU 4289676 galU Hyphomonas neptunium ATCC 15444 UTP-glucose-1-phosphate uridylyltransferase YP_759866.1 1158315 D 228405 CDS YP_759867.1 114797836 4288780 1159419..1160414 1 NC_008358.1 identified by match to protein family HMM PF00291; pyridoxal-phosphate-dependent enzyme 1160414 4288780 HNE_1148 Hyphomonas neptunium ATCC 15444 pyridoxal-phosphate-dependent enzyme YP_759867.1 1159419 D 228405 CDS YP_759868.1 114797097 4287964 1160603..1161490 1 NC_008358.1 identified by match to protein family HMM PF06981; putative Flp pilus assembly protein CpaB 1161490 4287964 HNE_1149 Hyphomonas neptunium ATCC 15444 putative Flp pilus assembly protein CpaB YP_759868.1 1160603 D 228405 CDS YP_759869.1 114799407 4289544 1161490..1162788 1 NC_008358.1 identified by match to protein family HMM PF00263; match to protein family HMM PF04972; type II/III secretion system protein 1162788 4289544 HNE_1150 Hyphomonas neptunium ATCC 15444 type II/III secretion system protein YP_759869.1 1161490 D 228405 CDS YP_759870.1 114798599 4290502 1162792..1163055 1 NC_008358.1 identified by similarity to GB:CAE27943.1; putative lipoprotein 1163055 4290502 HNE_1151 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759870.1 1162792 D 228405 CDS YP_759871.1 114799365 4288836 1163052..1164269 1 NC_008358.1 identified by similarity to GB:AAF40194.1; putative pilus assembly protein CpaE 1164269 4288836 HNE_1152 Hyphomonas neptunium ATCC 15444 putative pilus assembly protein CpaE YP_759871.1 1163052 D 228405 CDS YP_759872.1 114799052 4288951 1164266..1165654 1 NC_008358.1 identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437; type II/IV secretion system protein 1165654 4288951 HNE_1153 Hyphomonas neptunium ATCC 15444 type II/IV secretion system protein YP_759872.1 1164266 D 228405 CDS YP_759873.1 114797844 4288788 1165702..1166652 1 NC_008358.1 identified by match to protein family HMM PF00482; putative Flp pilus assembly protein TadB 1166652 4288788 HNE_1154 Hyphomonas neptunium ATCC 15444 putative Flp pilus assembly protein TadB YP_759873.1 1165702 D 228405 CDS YP_759874.1 114800177 4290021 1166665..1167597 1 NC_008358.1 identified by similarity to GB:AAN75213.1; match to protein family HMM PF00482; putative Flp pilus assembly protein TadC 1167597 4290021 HNE_1155 Hyphomonas neptunium ATCC 15444 putative Flp pilus assembly protein TadC YP_759874.1 1166665 D 228405 CDS YP_759875.1 114799515 4288908 1167642..1168598 1 NC_008358.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase carboxyl transferase subunit alpha 1168598 accA 4288908 accA Hyphomonas neptunium ATCC 15444 acetyl-CoA carboxylase carboxyl transferase subunit alpha YP_759875.1 1167642 D 228405 CDS YP_759876.1 114798043 4289518 1168608..1169561 1 NC_008358.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 1169561 thiL 4289518 thiL Hyphomonas neptunium ATCC 15444 thiamine-monophosphate kinase YP_759876.1 1168608 D 228405 CDS YP_759877.1 114797162 4287621 1169681..1171858 1 NC_008358.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1171858 hppA 4287621 hppA Hyphomonas neptunium ATCC 15444 membrane-bound proton-translocating pyrophosphatase YP_759877.1 1169681 D 228405 CDS YP_759878.1 114800062 4289385 complement(1172199..1172678) 1 NC_008358.1 identified by match to protein family HMM PF04355; SmpA/OmlA family protein 1172678 4289385 HNE_1159 Hyphomonas neptunium ATCC 15444 SmpA/OmlA family protein YP_759878.1 1172199 R 228405 CDS YP_759879.1 114799108 4289207 1172752..1173300 1 NC_008358.1 identified by similarity to GB:CAC45799.1; hypothetical protein 1173300 4289207 HNE_1160 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759879.1 1172752 D 228405 CDS YP_759880.1 114797527 4289488 1173406..1174440 1 NC_008358.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1174440 plsX 4289488 plsX Hyphomonas neptunium ATCC 15444 putative glycerol-3-phosphate acyltransferase PlsX YP_759880.1 1173406 D 228405 CDS YP_759881.1 114798802 4289152 1174473..1175444 1 NC_008358.1 identified by match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 1175444 fabH 4289152 fabH Hyphomonas neptunium ATCC 15444 3-oxoacyl-(acyl-carrier-protein) synthase III YP_759881.1 1174473 D 228405 CDS YP_759882.1 114798281 4287222 1175540..1175836 1 NC_008358.1 identified by similarity to SP:P30787; match to protein family HMM PF00216; putative integration host factor subunit alpha 1175836 4287222 HNE_1163 Hyphomonas neptunium ATCC 15444 putative integration host factor subunit alpha YP_759882.1 1175540 D 228405 CDS YP_759883.1 114798534 4288099 1175854..1176324 1 NC_008358.1 hypothetical protein 1176324 4288099 HNE_1164 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759883.1 1175854 D 228405 CDS YP_759884.1 114797442 4288562 1176673..1177080 1 NC_008358.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 1177080 msrB2 4288562 msrB2 Hyphomonas neptunium ATCC 15444 methionine-R-sulfoxide reductase YP_759884.1 1176673 D 228405 CDS YP_759885.1 114799788 4289805 1177145..1179382 1 NC_008358.1 identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897; S9A family peptidase 1179382 4289805 HNE_1167 Hyphomonas neptunium ATCC 15444 S9A family peptidase YP_759885.1 1177145 D 228405 CDS YP_759886.1 114799023 4287540 1179388..1179849 1 NC_008358.1 hypothetical protein 1179849 4287540 HNE_1168 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759886.1 1179388 D 228405 CDS YP_759887.1 114799566 4288551 complement(1179907..1180362) 1 NC_008358.1 identified by match to protein family HMM PF01575; MaoC family protein 1180362 4288551 HNE_1169 Hyphomonas neptunium ATCC 15444 MaoC family protein YP_759887.1 1179907 R 228405 CDS YP_759888.1 114798736 4289299 1180499..1180858 1 NC_008358.1 identified by similarity to GB:AAK22399.1; hypothetical protein 1180858 4289299 HNE_1170 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759888.1 1180499 D 228405 CDS YP_759889.1 114797668 4288146 complement(1180860..1182002) 1 NC_008358.1 identified by match to protein family HMM PF00266; class V aminotransferase 1182002 4288146 HNE_1171 Hyphomonas neptunium ATCC 15444 class V aminotransferase YP_759889.1 1180860 R 228405 CDS YP_759890.1 114799981 4290196 complement(1181902..1182762) 1 NC_008358.1 hypothetical protein 1182762 4290196 HNE_1172 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759890.1 1181902 R 228405 CDS YP_759891.1 114799319 4287328 complement(1182807..1183256) 1 NC_008358.1 identified by match to protein family HMM PF01152; hypothetical protein 1183256 4287328 HNE_1173 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759891.1 1182807 R 228405 CDS YP_759892.1 114800352 4288715 complement(1183357..1183878) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1183878 4288715 HNE_1174 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_759892.1 1183357 R 228405 CDS YP_759893.1 114797512 4287642 complement(1183875..1184483) 1 NC_008358.1 putative nicotinamide-nucleotide adenylyltransferase 1184483 4287642 HNE_1175 Hyphomonas neptunium ATCC 15444 putative nicotinamide-nucleotide adenylyltransferase YP_759893.1 1183875 R 228405 CDS YP_759894.1 114798743 4287978 complement(1184459..1185115) 1 NC_008358.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter PnuC 1185115 pnuC 4287978 pnuC Hyphomonas neptunium ATCC 15444 nicotinamide mononucleotide transporter PnuC YP_759894.1 1184459 R 228405 CDS YP_759895.1 114799491 4289182 complement(1185186..1186403) 1 NC_008358.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 1186403 4289182 HNE_1177 Hyphomonas neptunium ATCC 15444 isocitrate dehydrogenase YP_759895.1 1185186 R 228405 CDS YP_759896.1 114799978 4290193 1186488..1187234 1 NC_008358.1 identified by match to protein family HMM PF00588; RNA methyltransferase 1187234 4290193 HNE_1178 Hyphomonas neptunium ATCC 15444 RNA methyltransferase YP_759896.1 1186488 D 228405 CDS YP_759897.1 114797218 4289935 1187273..1188742 1 NC_008358.1 hypothetical protein 1188742 4289935 HNE_1179 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759897.1 1187273 D 228405 CDS YP_759898.1 114797528 4289489 complement(1188880..1189002) 1 NC_008358.1 hypothetical protein 1189002 4289489 HNE_1180 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759898.1 1188880 R 228405 CDS YP_759899.1 114799216 4289585 1188994..1189341 1 NC_008358.1 hypothetical protein 1189341 4289585 HNE_1181 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759899.1 1188994 D 228405 CDS YP_759900.1 114799512 4288905 complement(1189511..1190275) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 1190275 4288905 HNE_1182 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_759900.1 1189511 R 228405 CDS YP_759901.1 114798570 4289500 1190384..1191577 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 1191577 4289500 HNE_1183 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_759901.1 1190384 D 228405 CDS YP_759902.1 114800547 4289049 1191582..1192628 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 1192628 4289049 HNE_1184 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_759902.1 1191582 D 228405 CDS YP_759903.1 114799882 4287465 1192692..1193300 1 NC_008358.1 hypothetical protein 1193300 4287465 HNE_1185 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759903.1 1192692 D 228405 CDS YP_759904.1 114799520 4288913 1193327..1193926 1 NC_008358.1 identified by similarity to GB:BAC49397.1; hypothetical protein 1193926 4288913 HNE_1186 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759904.1 1193327 D 228405 CDS YP_759905.1 114799078 4287732 1194085..1194720 1 NC_008358.1 identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 1194720 eda 4287732 eda Hyphomonas neptunium ATCC 15444 2-dehydro-3-deoxyphosphogluconate aldolase YP_759905.1 1194085 D 228405 CDS YP_759906.1 114799756 4288040 complement(1194742..1196262) 1 NC_008358.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein 1196262 4288040 HNE_1188 Hyphomonas neptunium ATCC 15444 polysaccharide biosynthesis family protein YP_759906.1 1194742 R 228405 CDS YP_759907.1 114799044 4290522 1196829..1201379 1 NC_008358.1 identified by similarity to SP:P39847; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; ATP-dependent AMP-binding enzyme family protein 1201379 4290522 HNE_1189 Hyphomonas neptunium ATCC 15444 ATP-dependent AMP-binding enzyme family protein YP_759907.1 1196829 D 228405 CDS YP_759908.1 114800495 4289448 1201385..1207642 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; polyketide synthase type I 1207642 4289448 HNE_1190 Hyphomonas neptunium ATCC 15444 polyketide synthase type I YP_759908.1 1201385 D 228405 CDS YP_759909.1 114797740 4288277 1207651..1208583 1 NC_008358.1 identified by similarity to GB:AAN81510.1; hypothetical protein 1208583 4288277 HNE_1191 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759909.1 1207651 D 228405 CDS YP_759910.1 114797165 4287624 complement(1208622..1209788) 1 NC_008358.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 1209788 lldD 4287624 lldD Hyphomonas neptunium ATCC 15444 L-lactate dehydrogenase YP_759910.1 1208622 R 228405 CDS YP_759911.1 114797967 4288330 1210140..1211444 1 NC_008358.1 identified by similarity to GB:AAK22150.1; hypothetical protein 1211444 4288330 HNE_1193 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759911.1 1210140 D 228405 CDS YP_759912.1 114799879 4287462 1211506..1213911 1 NC_008358.1 identified by match to protein family HMM PF02706; chain length determinant family protein 1213911 4287462 HNE_1194 Hyphomonas neptunium ATCC 15444 chain length determinant family protein YP_759912.1 1211506 D 228405 CDS YP_759913.1 114797346 4287200 1213995..1215134 1 NC_008358.1 identified by similarity to SP:P33694; putative glycosyl transferase 1215134 4287200 HNE_1195 Hyphomonas neptunium ATCC 15444 putative glycosyl transferase YP_759913.1 1213995 D 228405 CDS YP_759914.1 114798343 4288626 1215318..1216487 1 NC_008358.1 identified by match to protein family HMM PF04932; putative O-antigen polymerase 1216487 4288626 HNE_1196 Hyphomonas neptunium ATCC 15444 putative O-antigen polymerase YP_759914.1 1215318 D 228405 CDS YP_759915.1 114799285 4289010 1216487..1217215 1 NC_008358.1 identified by match to protein family HMM PF00657; putative lipase/acylhydrolase 1217215 4289010 HNE_1197 Hyphomonas neptunium ATCC 15444 putative lipase/acylhydrolase YP_759915.1 1216487 D 228405 CDS YP_759916.1 114797651 4289045 1217239..1218318 1 NC_008358.1 identified by similarity to SP:P26502; match to protein family HMM PF01757; acyltransferase family protein 1218318 4289045 HNE_1198 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_759916.1 1217239 D 228405 CDS YP_759917.1 114798500 4287753 1218454..1218657 1 NC_008358.1 hypothetical protein 1218657 4287753 HNE_1199 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759917.1 1218454 D 228405 CDS YP_759918.1 114799522 4288915 1218768..1219775 1 NC_008358.1 identified by similarity to SP:P26503; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1219775 galE 4288915 galE Hyphomonas neptunium ATCC 15444 UDP-glucose 4-epimerase YP_759918.1 1218768 D 228405 CDS YP_759919.1 114798437 4290299 1219817..1220815 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1220815 4290299 HNE_1201 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_759919.1 1219817 D 228405 CDS YP_759920.1 114799683 4288705 complement(1220808..1221677) 1 NC_008358.1 identified by match to protein family HMM PF06271; RDD family protein 1221677 4288705 HNE_1202 Hyphomonas neptunium ATCC 15444 RDD family protein YP_759920.1 1220808 R 228405 CDS YP_759921.1 114797642 4289036 complement(1221758..1222756) 1 NC_008358.1 hypothetical protein 1222756 4289036 HNE_1203 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759921.1 1221758 R 228405 CDS YP_759922.1 114798248 4288941 complement(1222753..1224066) 1 NC_008358.1 identified by similarity to GB:AAK22553.1; match to protein family HMM PF01882; hypothetical protein 1224066 4288941 HNE_1204 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759922.1 1222753 R 228405 CDS YP_759923.1 114797075 4287356 complement(1224063..1225019) 1 NC_008358.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728; AAA ATPase 1225019 4287356 HNE_1205 Hyphomonas neptunium ATCC 15444 AAA ATPase YP_759923.1 1224063 R 228405 CDS YP_759924.1 114800478 4289431 complement(1225006..1226226) 1 NC_008358.1 identified by similarity to GB:AAK22551.1; hypothetical protein 1226226 4289431 HNE_1206 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759924.1 1225006 R 228405 CDS YP_759925.1 114799555 4288540 complement(1226223..1226834) 1 NC_008358.1 hypothetical protein 1226834 4288540 HNE_1207 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759925.1 1226223 R 228405 CDS YP_759926.1 114799623 4290263 complement(1227226..1228785) 1 NC_008358.1 identified by similarity to GB:AAK23612.1; hypothetical protein 1228785 4290263 HNE_1208 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759926.1 1227226 R 228405 CDS YP_759927.1 114798554 4287398 1228936..1229862 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1229862 4287398 HNE_1209 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_759927.1 1228936 D 228405 CDS YP_759928.1 114799359 4288129 1229923..1230390 1 NC_008358.1 identified by similarity to GB:AAT34025.1; hypothetical protein 1230390 4288129 HNE_1210 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759928.1 1229923 D 228405 CDS YP_759929.1 114797592 4286997 complement(1230376..1232313) 1 NC_008358.1 identified by match to protein family HMM PF00135; carboxylesterase/lipase family protein 1232313 4286997 HNE_1211 Hyphomonas neptunium ATCC 15444 carboxylesterase/lipase family protein YP_759929.1 1230376 R 228405 CDS YP_759930.1 114799026 4287543 complement(1232467..1233588) 1 NC_008358.1 catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine; cystathionine gamma-lyase 1233588 4287543 HNE_1212 Hyphomonas neptunium ATCC 15444 cystathionine gamma-lyase YP_759930.1 1232467 R 228405 CDS YP_759931.1 114797773 4289617 complement(1233581..1234576) 1 NC_008358.1 hypothetical protein 1234576 4289617 HNE_1213 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759931.1 1233581 R 228405 CDS YP_759932.1 114799702 4289120 complement(1234667..1235488) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 1235488 4289120 HNE_1214 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_759932.1 1234667 R 228405 CDS YP_759933.1 114799020 4287537 complement(1235569..1235991) 1 NC_008358.1 identified by similarity to GB:AAK25421.1; hypothetical protein 1235991 4287537 HNE_1215 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759933.1 1235569 R 228405 CDS YP_759934.1 114798523 4290328 complement(1235996..1236565) 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 1236565 4290328 HNE_1216 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_759934.1 1235996 R 228405 CDS YP_759935.1 114797408 4287674 complement(1236562..1238874) 1 NC_008358.1 identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930; dipeptidyl aminopeptidase IV 1238874 4287674 HNE_1217 Hyphomonas neptunium ATCC 15444 dipeptidyl aminopeptidase IV YP_759935.1 1236562 R 228405 CDS YP_759936.1 114797755 4288213 complement(1238984..1239853) 1 NC_008358.1 hypothetical protein 1239853 4288213 HNE_1218 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759936.1 1238984 R 228405 CDS YP_759937.1 114800544 4288889 1239952..1241616 1 NC_008358.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1241616 4288889 HNE_1219 Hyphomonas neptunium ATCC 15444 putative ABC transporter ATP-binding protein YP_759937.1 1239952 D 228405 CDS YP_759938.1 114800109 4289992 1241805..1243325 1 NC_008358.1 identified by match to protein family HMM PF01425; amidase family protein 1243325 4289992 HNE_1220 Hyphomonas neptunium ATCC 15444 amidase family protein YP_759938.1 1241805 D 228405 CDS YP_759939.1 114799164 4287016 1243423..1243974 1 NC_008358.1 hypothetical protein 1243974 4287016 HNE_1221 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759939.1 1243423 D 228405 CDS YP_759940.1 114797916 4287266 complement(1243996..1244691) 1 NC_008358.1 hypothetical protein 1244691 4287266 HNE_1222 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759940.1 1243996 R 228405 CDS YP_759941.1 114797167 4287626 1244793..1245404 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1245404 4287626 HNE_1223 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_759941.1 1244793 D 228405 CDS YP_759942.1 114799289 4289014 1245718..1246086 1 NC_008358.1 hypothetical protein 1246086 4289014 HNE_1224 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759942.1 1245718 D 228405 CDS YP_759943.1 114800454 4288196 complement(1246171..1246338) 1 NC_008358.1 identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; cbb3-type cytochrome oxidase maturation protein 1246338 ccoS 4288196 ccoS Hyphomonas neptunium ATCC 15444 cbb3-type cytochrome oxidase maturation protein YP_759943.1 1246171 R 228405 CDS YP_759944.1 114797319 4287524 complement(1246335..1248554) 1 NC_008358.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1248554 4287524 HNE_1226 Hyphomonas neptunium ATCC 15444 copper-translocating P-type ATPase YP_759944.1 1246335 R 228405 CDS YP_759945.1 114798267 4287247 complement(1248551..1249069) 1 NC_008358.1 FixH family protein 1249069 4287247 HNE_1227 Hyphomonas neptunium ATCC 15444 FixH family protein YP_759945.1 1248551 R 228405 CDS YP_759946.1 114797401 4287097 complement(1249069..1250541) 1 NC_008358.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; cytochrome c oxidase accessory protein FixG 1250541 fixG 4287097 fixG Hyphomonas neptunium ATCC 15444 cytochrome c oxidase accessory protein FixG YP_759946.1 1249069 R 228405 CDS YP_759947.1 114798210 4287834 complement(1250538..1251428) 1 NC_008358.1 identified by similarity to GB:AAC72074.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782; cbb3-type cytochrome c oxidase subunit III 1251428 ccoP 4287834 ccoP Hyphomonas neptunium ATCC 15444 cbb3-type cytochrome c oxidase subunit III YP_759947.1 1250538 R 228405 CDS YP_759948.1 114798950 4289649 complement(1251421..1251582) 1 NC_008358.1 identified by similarity to GB:AAK23384.1; match to protein family HMM PF05545; cbb3-type cytochrome c oxidase subunit CcoQ 1251582 ccoQ 4289649 ccoQ Hyphomonas neptunium ATCC 15444 cbb3-type cytochrome c oxidase subunit CcoQ YP_759948.1 1251421 R 228405 CDS YP_759949.1 114797438 4287175 complement(1251594..1252361) 1 NC_008358.1 identified by similarity to GB:AAC46109.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781; cbb3-type cytochrome c oxidase subunit II 1252361 ccoO 4287175 ccoO Hyphomonas neptunium ATCC 15444 cbb3-type cytochrome c oxidase subunit II YP_759949.1 1251594 R 228405 CDS YP_759950.1 114799357 4288127 complement(1252373..1254052) 1 NC_008358.1 identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; cbb3-type cytochrome c oxidase subunit I 1254052 ccoN 4288127 ccoN Hyphomonas neptunium ATCC 15444 cbb3-type cytochrome c oxidase subunit I YP_759950.1 1252373 R 228405 CDS YP_759951.1 114800164 4290008 1254201..1254488 1 NC_008358.1 hypothetical protein 1254488 4290008 HNE_1233 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759951.1 1254201 D 228405 CDS YP_759952.1 114797394 4287090 1254562..1255728 1 NC_008358.1 identified by similarity to SP:P26489; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase FixL 1255728 fixL 4287090 fixL Hyphomonas neptunium ATCC 15444 sensory box sensor histidine kinase FixL YP_759952.1 1254562 D 228405 CDS YP_759953.1 114798134 4287602 1255725..1256342 1 NC_008358.1 identified by similarity to SP:P10958; match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator FixJ 1256342 fixJ 4287602 fixJ Hyphomonas neptunium ATCC 15444 DNA-binding response regulator FixJ YP_759953.1 1255725 D 228405 CDS YP_759954.1 114800503 4289456 1256412..1256822 1 NC_008358.1 identified by match to protein family HMM PF00072; response regulator 1256822 4289456 HNE_1236 Hyphomonas neptunium ATCC 15444 response regulator YP_759954.1 1256412 D 228405 CDS YP_759955.1 114800095 4289978 complement(1256830..1258269) 1 NC_008358.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein 1258269 4289978 HNE_1237 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_759955.1 1256830 R 228405 CDS YP_759956.1 114800327 4289261 1258427..1260064 1 NC_008358.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1260064 aceB 4289261 aceB Hyphomonas neptunium ATCC 15444 malate synthase YP_759956.1 1258427 D 228405 CDS YP_759957.1 114797791 4288055 1260109..1261731 1 NC_008358.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1261731 aceA 4288055 aceA Hyphomonas neptunium ATCC 15444 isocitrate lyase YP_759957.1 1260109 D 228405 CDS YP_759958.1 114798790 4287772 1262096..1262293 1 NC_008358.1 hypothetical protein 1262293 4287772 HNE_1240 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759958.1 1262096 D 228405 CDS YP_759959.1 114797909 4287259 complement(1262297..1262860) 1 NC_008358.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 1262860 4287259 HNE_1241 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759959.1 1262297 R 228405 CDS YP_759960.1 114797357 4287211 1262993..1264849 1 NC_008358.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; heavy metal ABC transporter permease/ATP-binding protein 1264849 4287211 HNE_1242 Hyphomonas neptunium ATCC 15444 heavy metal ABC transporter permease/ATP-binding protein YP_759960.1 1262993 D 228405 CDS YP_759961.1 114799288 4289013 1264876..1265823 1 NC_008358.1 phosphatidylserine decarboxylase-related protein 1265823 4289013 HNE_1243 Hyphomonas neptunium ATCC 15444 phosphatidylserine decarboxylase-related protein YP_759961.1 1264876 D 228405 CDS YP_759962.1 114798872 4289728 complement(1266168..1266971) 1 NC_008358.1 putative lipoprotein 1266971 4289728 HNE_1244 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759962.1 1266168 R 228405 CDS YP_759963.1 114798344 4288627 complement(1266974..1267936) 1 NC_008358.1 putative lipoprotein 1267936 4288627 HNE_1245 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759963.1 1266974 R 228405 CDS YP_759964.1 114797276 4290540 1268227..1270851 1 NC_008358.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00486; serine/threonine protein kinase 1270851 4290540 HNE_1246 Hyphomonas neptunium ATCC 15444 serine/threonine protein kinase YP_759964.1 1268227 D 228405 CDS YP_759965.1 114800419 4290363 complement(1270852..1272129) 1 NC_008358.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1272129 bioA 4290363 bioA Hyphomonas neptunium ATCC 15444 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_759965.1 1270852 R 228405 CDS YP_759966.1 114798527 4290332 1272238..1273377 1 NC_008358.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212; 8-amino-7-oxononanoate synthase 1273377 bioF 4290332 bioF Hyphomonas neptunium ATCC 15444 8-amino-7-oxononanoate synthase YP_759966.1 1272238 D 228405 CDS YP_759967.1 114797529 4289490 1273359..1274027 1 NC_008358.1 identified by similarity to SP:P53558; match to protein family HMM TIGR00347; dethiobiotin synthase 1274027 bioD 4289490 bioD Hyphomonas neptunium ATCC 15444 dethiobiotin synthase YP_759967.1 1273359 D 228405 CDS YP_759968.1 114798460 4287695 1274155..1274775 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1274775 4287695 HNE_1250 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_759968.1 1274155 D 228405 CDS YP_759969.1 114798275 4287255 complement(1274797..1276161) 1 NC_008358.1 identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase 1276161 4287255 HNE_1251 Hyphomonas neptunium ATCC 15444 M20/M25/M40 family peptidase YP_759969.1 1274797 R 228405 CDS YP_759970.1 114797293 4289217 complement(1276194..1277249) 1 NC_008358.1 identified by match to protein family HMM PF00296; luciferase family monooxygenase 1277249 4289217 HNE_1252 Hyphomonas neptunium ATCC 15444 luciferase family monooxygenase YP_759970.1 1276194 R 228405 CDS YP_759971.1 114800339 4289273 complement(1277294..1278637) 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1278637 4289273 HNE_1253 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_759971.1 1277294 R 228405 CDS YP_759972.1 114799230 4288293 complement(1278835..1280097) 1 NC_008358.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator family protein 1280097 4288293 HNE_1254 Hyphomonas neptunium ATCC 15444 major facilitator family protein YP_759972.1 1278835 R 228405 CDS YP_759973.1 114798613 4289872 complement(1280094..1280678) 1 NC_008358.1 identified by match to protein family HMM PF01613; flavin reductase family protein 1280678 4289872 HNE_1255 Hyphomonas neptunium ATCC 15444 flavin reductase family protein YP_759973.1 1280094 R 228405 CDS YP_759974.1 114799386 4288508 complement(1280623..1281903) 1 NC_008358.1 hypothetical protein 1281903 4288508 HNE_1256 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759974.1 1280623 R 228405 CDS YP_759975.1 114800521 4288866 complement(1282015..1282665) 1 NC_008358.1 identified by match to protein family HMM PF00857; isochorismatase family protein 1282665 4288866 HNE_1257 Hyphomonas neptunium ATCC 15444 isochorismatase family protein YP_759975.1 1282015 R 228405 CDS YP_759976.1 114797899 4288087 complement(1282784..1285177) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 1285177 4288087 HNE_1258 Hyphomonas neptunium ATCC 15444 putative TonB-dependent receptor YP_759976.1 1282784 R 228405 CDS YP_759977.1 114798158 4290391 complement(1285545..1286258) 1 NC_008358.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1286258 4290391 HNE_1259 Hyphomonas neptunium ATCC 15444 GntR family transcriptional regulator YP_759977.1 1285545 R 228405 CDS YP_759978.1 114799664 4288686 1286522..1288225 1 NC_008358.1 identified by match to protein family HMM PF00245; alkaline phosphatase 1288225 phoD1 4288686 phoD1 Hyphomonas neptunium ATCC 15444 alkaline phosphatase YP_759978.1 1286522 D 228405 CDS YP_759979.1 114798509 4287762 complement(1288277..1290862) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1290862 4287762 HNE_1261 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_759979.1 1288277 R 228405 CDS YP_759980.1 114797551 4287386 complement(1291125..1291631) 1 NC_008358.1 hypothetical protein 1291631 4287386 HNE_1262 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759980.1 1291125 R 228405 CDS YP_759981.1 114800098 4289981 1291683..1293713 1 NC_008358.1 identified by match to protein family HMM PF02518; putative sensor histidine kinase 1293713 4289981 HNE_1263 Hyphomonas neptunium ATCC 15444 putative sensor histidine kinase YP_759981.1 1291683 D 228405 CDS YP_759982.1 114799510 4288903 complement(1293719..1294360) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; putative DNA-binding response regulator 1294360 4288903 HNE_1264 Hyphomonas neptunium ATCC 15444 putative DNA-binding response regulator YP_759982.1 1293719 R 228405 CDS YP_759983.1 114798031 4287186 1294441..1295025 1 NC_008358.1 hypothetical protein 1295025 4287186 HNE_1265 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759983.1 1294441 D 228405 CDS YP_759984.1 114797499 4287628 complement(1295181..1295594) 1 NC_008358.1 hypothetical protein 1295594 4287628 HNE_1266 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759984.1 1295181 R 228405 CDS YP_759985.1 114800472 4289425 1295259..1295669 1 NC_008358.1 hypothetical protein 1295669 4289425 HNE_1267 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759985.1 1295259 D 228405 CDS YP_759986.1 114800115 4289998 1295740..1297101 1 NC_008358.1 identified by similarity to GB:AAN68937.1; hypothetical protein 1297101 4289998 HNE_1268 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759986.1 1295740 D 228405 CDS YP_759987.1 114797572 4287290 1297227..1298729 1 NC_008358.1 identified by match to protein family HMM PF00743; monooxygenase flavin-binding family protein 1298729 4287290 HNE_1269 Hyphomonas neptunium ATCC 15444 monooxygenase flavin-binding family protein YP_759987.1 1297227 D 228405 CDS YP_759988.1 114799935 4290089 1298787..1300163 1 NC_008358.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1300163 mgtE 4290089 mgtE Hyphomonas neptunium ATCC 15444 magnesium transporter YP_759988.1 1298787 D 228405 CDS YP_759989.1 114797826 4288479 1300272..1301537 1 NC_008358.1 identified by match to protein family HMM PF00959; putative lysozyme 1301537 4288479 HNE_1271 Hyphomonas neptunium ATCC 15444 putative lysozyme YP_759989.1 1300272 D 228405 CDS YP_759990.1 114798575 4289505 1301577..1302749 1 NC_008358.1 identified by similarity to SP:Q9FS87; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; isovaleryl-CoA dehydrogenase 1302749 ivd2 4289505 ivd2 Hyphomonas neptunium ATCC 15444 isovaleryl-CoA dehydrogenase YP_759990.1 1301577 D 228405 CDS YP_759991.1 114799414 4289551 1302746..1303375 1 NC_008358.1 identified by similarity to GB:AAM43210.1; putative lipoprotein 1303375 4289551 HNE_1273 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_759991.1 1302746 D 228405 CDS YP_759992.1 114799419 4289556 complement(1303379..1303867) 1 NC_008358.1 identified by similarity to GB:AAS03378.1; hypothetical protein 1303867 4289556 HNE_1274 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759992.1 1303379 R 228405 CDS YP_759993.1 114800173 4290017 complement(1303992..1305959) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase/response regulator 1305959 4290017 HNE_1275 Hyphomonas neptunium ATCC 15444 sensory box sensor histidine kinase/response regulator YP_759993.1 1303992 R 228405 CDS YP_759994.1 114798346 4288629 complement(1306062..1307840) 1 NC_008358.1 identified by match to protein family HMM PF00027; match to protein family HMM PF01734; cyclic nucleotide-binding/patatin-like phospholipase domain-containing protein 1307840 4288629 HNE_1276 Hyphomonas neptunium ATCC 15444 cyclic nucleotide-binding/patatin-like phospholipase domain-containing protein YP_759994.1 1306062 R 228405 CDS YP_759995.1 114798965 4287422 1307966..1309573 1 NC_008358.1 identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein 1309573 4287422 HNE_1277 Hyphomonas neptunium ATCC 15444 carboxyl transferase domain-containing protein YP_759995.1 1307966 D 228405 CDS YP_759996.1 114797848 4288792 complement(1309632..1310126) 1 NC_008358.1 identified by similarity to SP:P80238; putative general stress protein 1310126 4288792 HNE_1278 Hyphomonas neptunium ATCC 15444 putative general stress protein YP_759996.1 1309632 R 228405 CDS YP_759997.1 114800436 4288178 1310325..1310624 1 NC_008358.1 hypothetical protein 1310624 4288178 HNE_1279 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759997.1 1310325 D 228405 CDS YP_759998.1 114797569 4287287 complement(1310685..1310780) 1 NC_008358.1 hypothetical protein 1310780 4287287 HNE_1280 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_759998.1 1310685 R 228405 CDS YP_759999.1 114798548 4287392 1310833..1311858 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 1311858 4287392 HNE_1281 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_759999.1 1310833 D 228405 CDS YP_760000.1 114798546 4288111 1311874..1312674 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 1312674 4288111 HNE_1282 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_760000.1 1311874 D 228405 CDS YP_760001.1 114800005 4288797 complement(1312691..1313026) 1 NC_008358.1 identified by similarity to GB:CAG75918.1; hypothetical protein 1313026 4288797 HNE_1283 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760001.1 1312691 R 228405 CDS YP_760002.1 114797387 4287083 1313242..1314054 1 NC_008358.1 identified by match to protein family HMM PF05675; hypothetical protein 1314054 4287083 HNE_1284 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760002.1 1313242 D 228405 CDS YP_760003.1 114797946 4289558 1314026..1315927 1 NC_008358.1 identified by similarity to SP:Q42523; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; methylcrotonoyl-CoA carboxylase subunit alpha 1315927 mccA 4289558 mccA Hyphomonas neptunium ATCC 15444 methylcrotonoyl-CoA carboxylase subunit alpha YP_760003.1 1314026 D 228405 CDS YP_760004.1 114798131 4287599 complement(1315931..1317730) 1 NC_008358.1 identified by similarity to GB:AAL14233.1; match to protein family HMM PF00743; cyclododecanone monooxygenase 1317730 4287599 HNE_1286 Hyphomonas neptunium ATCC 15444 cyclododecanone monooxygenase YP_760004.1 1315931 R 228405 CDS YP_760005.1 114798913 4288499 complement(1317846..1319120) 1 NC_008358.1 identified by similarity to GB:CAF29646.1; hypothetical protein 1319120 4288499 HNE_1287 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760005.1 1317846 R 228405 CDS YP_760006.1 114800506 4289459 1319382..1321316 1 NC_008358.1 identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1321316 4289459 HNE_1288 Hyphomonas neptunium ATCC 15444 Tat pathway signal sequence domain-containing protein YP_760006.1 1319382 D 228405 CDS YP_760007.1 114799598 4289094 complement(1321338..1322858) 1 NC_008358.1 identified by match to protein family HMM PF03724; putative lipoprotein 1322858 4289094 HNE_1289 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760007.1 1321338 R 228405 CDS YP_760008.1 114797564 4287282 1323099..1323839 1 NC_008358.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 1323839 4287282 HNE_1290 Hyphomonas neptunium ATCC 15444 cyclic nucleotide-binding protein YP_760008.1 1323099 D 228405 CDS YP_760009.1 114799228 4288291 complement(1323867..1324346) 1 NC_008358.1 putative lipoprotein 1324346 4288291 HNE_1291 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760009.1 1323867 R 228405 CDS YP_760010.1 114799524 4288917 complement(1324475..1325563) 1 NC_008358.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1325563 4288917 HNE_1292 Hyphomonas neptunium ATCC 15444 ribonuclease Z YP_760010.1 1324475 R 228405 CDS YP_760011.1 114800303 4287948 1325751..1326278 1 NC_008358.1 hypothetical protein 1326278 4287948 HNE_1293 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760011.1 1325751 D 228405 CDS YP_760012.1 114797261 4288459 1326469..1327929 1 NC_008358.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1327929 amn 4288459 amn Hyphomonas neptunium ATCC 15444 AMP nucleosidase YP_760012.1 1326469 D 228405 CDS YP_760013.1 114798713 4290441 1327938..1328333 1 NC_008358.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 1328333 cdd 4290441 cdd Hyphomonas neptunium ATCC 15444 cytidine deaminase YP_760013.1 1327938 D 228405 CDS YP_760014.1 114799075 4287729 1328418..1329200 1 NC_008358.1 hypothetical protein 1329200 4287729 HNE_1296 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760014.1 1328418 D 228405 CDS YP_760015.1 114799967 4290181 1329328..1329753 1 NC_008358.1 hypothetical protein 1329753 4290181 HNE_1297 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760015.1 1329328 D 228405 CDS YP_760016.1 114799130 4287784 complement(1329927..1330340) 1 NC_008358.1 hypothetical protein 1330340 4287784 HNE_1298 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760016.1 1329927 R 228405 CDS YP_760017.1 114799739 4288023 complement(1331462..1332094) 1 NC_008358.1 hypothetical protein 1332094 4288023 HNE_1299 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760017.1 1331462 R 228405 CDS YP_760018.1 114798564 4287408 complement(1332091..1332975) 1 NC_008358.1 identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein 1332975 4287408 HNE_1300 Hyphomonas neptunium ATCC 15444 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein YP_760018.1 1332091 R 228405 CDS YP_760019.1 114799540 4288525 complement(1333574..1333807) 1 NC_008358.1 hypothetical protein 1333807 4288525 HNE_1301 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760019.1 1333574 R 228405 CDS YP_760020.1 114799336 4290170 1334705..1335637 1 NC_008358.1 identified by match to protein family HMM PF00226; match to protein family HMM PF01556; molecuar chaperone DnaJ 1335637 4290170 HNE_1302 Hyphomonas neptunium ATCC 15444 molecuar chaperone DnaJ YP_760020.1 1334705 D 228405 CDS YP_760021.1 114800313 4289247 1335738..1337462 1 NC_008358.1 identified by similarity to GB:BAC90684.1; hypothetical protein 1337462 4289247 HNE_1303 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760021.1 1335738 D 228405 CDS YP_760022.1 114797144 4288361 complement(1337487..1338191) 1 NC_008358.1 hypothetical protein 1338191 4288361 HNE_1304 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760022.1 1337487 R 228405 CDS YP_760023.1 114798361 4290418 1338426..1338752 1 NC_008358.1 identified by similarity to GB:AAK24731.1; hypothetical protein 1338752 4290418 HNE_1305 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760023.1 1338426 D 228405 CDS YP_760024.1 114797709 4289359 1338783..1339466 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1339466 4289359 HNE_1306 Hyphomonas neptunium ATCC 15444 DNA-binding response regulator YP_760024.1 1338783 D 228405 CDS YP_760025.1 114797185 4287055 1339492..1340919 1 NC_008358.1 identified by match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1340919 4287055 HNE_1307 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_760025.1 1339492 D 228405 CDS YP_760026.1 114799426 4289330 1340997..1341509 1 NC_008358.1 identified by match to protein family HMM PF07719; hypothetical protein 1341509 4289330 HNE_1308 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760026.1 1340997 D 228405 CDS YP_760027.1 114797067 4287035 1341563..1341988 1 NC_008358.1 identified by match to protein family HMM PF03100; cytochrome c-type biogenesis protein CcmE 1341988 ccmE 4287035 ccmE Hyphomonas neptunium ATCC 15444 cytochrome c-type biogenesis protein CcmE YP_760027.1 1341563 D 228405 CDS YP_760028.1 114797201 4287072 1341985..1343892 1 NC_008358.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmF 1343892 ccmF 4287072 ccmF Hyphomonas neptunium ATCC 15444 cytochrome c-type biogenesis protein CcmF YP_760028.1 1341985 D 228405 CDS YP_760029.1 114799948 4290103 complement(1343867..1345420) 1 NC_008358.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1345420 4290103 HNE_1311 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_760029.1 1343867 R 228405 CDS YP_760030.1 114797880 4288670 complement(1345454..1346161) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1346161 4288670 HNE_1312 Hyphomonas neptunium ATCC 15444 DNA-binding response regulator YP_760030.1 1345454 R 228405 CDS YP_760031.1 114798730 4289293 complement(1346194..1347732) 1 NC_008358.1 identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease 1347732 4289293 HNE_1313 Hyphomonas neptunium ATCC 15444 Do family protease YP_760031.1 1346194 R 228405 CDS YP_760032.1 114799452 4289668 complement(1347886..1348284) 1 NC_008358.1 identified by similarity to SP:P45405; match to protein family HMM PF03918; cytochrome C biogenesis protein 1348284 4289668 HNE_1314 Hyphomonas neptunium ATCC 15444 cytochrome C biogenesis protein YP_760032.1 1347886 R 228405 CDS YP_760033.1 114800208 4288982 complement(1348338..1348769) 1 NC_008358.1 identified by similarity to GB:CAC46696.1; hypothetical protein 1348769 4288982 HNE_1315 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760033.1 1348338 R 228405 CDS YP_760034.1 114797463 4288408 1348880..1351639 1 NC_008358.1 identified by match to protein family HMM PF03710; glutamate ammonia ligase adenylyl-transferase 1351639 glnE 4288408 glnE Hyphomonas neptunium ATCC 15444 glutamate ammonia ligase adenylyl-transferase YP_760034.1 1348880 D 228405 CDS YP_760035.1 114798175 4287664 1351685..1352284 1 NC_008358.1 EF hand domain-containing protein 1352284 4287664 HNE_1317 Hyphomonas neptunium ATCC 15444 EF hand domain-containing protein YP_760035.1 1351685 D 228405 CDS YP_760036.1 114797400 4287096 1352385..1352930 1 NC_008358.1 identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 1352930 4287096 HNE_1318 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_760036.1 1352385 D 228405 CDS YP_760037.1 114797919 4287269 1352927..1353382 1 NC_008358.1 identified by similarity to GB:AAK24714.1; hypothetical protein 1353382 4287269 HNE_1319 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760037.1 1352927 D 228405 CDS YP_760038.1 114799779 4289796 1353379..1353900 1 NC_008358.1 hypothetical protein 1353900 4289796 HNE_1320 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760038.1 1353379 D 228405 CDS YP_760039.1 114799005 4288437 complement(1353897..1354331) 1 NC_008358.1 identified by similarity to GB:BAC91546.1; match to protein family HMM PF04828; hypothetical protein 1354331 4288437 HNE_1321 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760039.1 1353897 R 228405 CDS YP_760040.1 114798308 4289472 complement(1354295..1355743) 1 NC_008358.1 identified by similarity to SP:P13397; match to protein family HMM PF01425; 6-aminohexanoate-cyclic-dimer hydrolase 1355743 4289472 HNE_1322 Hyphomonas neptunium ATCC 15444 6-aminohexanoate-cyclic-dimer hydrolase YP_760040.1 1354295 R 228405 CDS YP_760041.1 114800254 4287489 1355984..1357357 1 NC_008358.1 identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386; TrkH family potassium uptake protein 1357357 4287489 HNE_1323 Hyphomonas neptunium ATCC 15444 TrkH family potassium uptake protein YP_760041.1 1355984 D 228405 CDS YP_760042.1 114799385 4288507 complement(1357387..1357791) 1 NC_008358.1 identified by similarity to GB:AAK25445.1; match to protein family HMM PF06262; hypothetical protein 1357791 4288507 HNE_1324 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760042.1 1357387 R 228405 CDS YP_760043.1 114800163 4290007 complement(1357788..1358108) 1 NC_008358.1 identified by similarity to GB:AAS81236.1; match to protein family HMM PF01906; hypothetical protein 1358108 4290007 HNE_1325 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760043.1 1357788 R 228405 CDS YP_760044.1 114799394 4288516 complement(1358128..1360290) 1 NC_008358.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1360290 mutB 4288516 mutB Hyphomonas neptunium ATCC 15444 methylmalonyl-CoA mutase YP_760044.1 1358128 R 228405 CDS YP_760045.1 114798788 4287770 complement(1360287..1362206) 1 NC_008358.1 identified by similarity to SP:Q05064; match to protein family HMM PF01642; methylmalonyl-CoA mutase small subunit 1362206 mutA 4287770 mutA Hyphomonas neptunium ATCC 15444 methylmalonyl-CoA mutase small subunit YP_760045.1 1360287 R 228405 CDS YP_760046.1 114799449 4289665 1362407..1362661 1 NC_008358.1 hypothetical protein 1362661 4289665 HNE_1328 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760046.1 1362407 D 228405 CDS YP_760047.1 114797358 4287212 1362968..1363966 1 NC_008358.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1363966 4287212 HNE_1329 Hyphomonas neptunium ATCC 15444 2-nitropropane dioxygenase YP_760047.1 1362968 D 228405 CDS YP_760048.1 114800050 4289373 1364260..1364667 1 NC_008358.1 identified by similarity to GB:AAP48785.1; hypothetical protein 1364667 4289373 HNE_1330 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760048.1 1364260 D 228405 CDS YP_760049.1 114798831 4287561 1364664..1365125 1 NC_008358.1 hypothetical protein 1365125 4287561 HNE_1331 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760049.1 1364664 D 228405 CDS YP_760050.1 114798034 4287189 complement(1365251..1366042) 1 NC_008358.1 identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 1366042 map2 4287189 map2 Hyphomonas neptunium ATCC 15444 methionine aminopeptidase YP_760050.1 1365251 R 228405 CDS YP_760051.1 114797710 4289360 complement(1366039..1366251) 1 NC_008358.1 identified by similarity to GB:AAV82898.1; hypothetical protein 1366251 4289360 HNE_1333 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760051.1 1366039 R 228405 CDS YP_760052.1 114800494 4289447 1366391..1367755 1 NC_008358.1 identified by match to protein family HMM PF01425; amidase family protein 1367755 4289447 HNE_1334 Hyphomonas neptunium ATCC 15444 amidase family protein YP_760052.1 1366391 D 228405 CDS YP_760053.1 114799418 4289555 1367752..1369233 1 NC_008358.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 1369233 glpK 4289555 glpK Hyphomonas neptunium ATCC 15444 glycerol kinase YP_760053.1 1367752 D 228405 CDS YP_760054.1 114800155 4290488 complement(1369307..1371328) 1 NC_008358.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02230; S9 family peptidase 1371328 4290488 HNE_1336 Hyphomonas neptunium ATCC 15444 S9 family peptidase YP_760054.1 1369307 R 228405 CDS YP_760055.1 114799350 4288120 1371644..1374640 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1374640 4288120 HNE_1337 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760055.1 1371644 D 228405 CDS YP_760056.1 114798685 4289754 1374767..1376086 1 NC_008358.1 identified by match to protein family HMM PF00324; amino acid permease family protein 1376086 4289754 HNE_1338 Hyphomonas neptunium ATCC 15444 amino acid permease family protein YP_760056.1 1374767 D 228405 CDS YP_760057.1 114797504 4287633 1376170..1376397 1 NC_008358.1 hypothetical protein 1376397 4287633 HNE_1339 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760057.1 1376170 D 228405 CDS YP_760058.1 114800091 4289974 1376397..1376720 1 NC_008358.1 hypothetical protein 1376720 4289974 HNE_1340 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760058.1 1376397 D 228405 CDS YP_760059.1 114799109 4289208 1377007..1377156 1 NC_008358.1 hypothetical protein 1377156 4289208 HNE_1342 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760059.1 1377007 D 228405 CDS YP_760060.1 114798086 4288234 1377163..1378389 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 1378389 4288234 HNE_1343 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_760060.1 1377163 D 228405 CDS YP_760061.1 114797160 4287619 1378444..1379724 1 NC_008358.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1379724 murA 4287619 murA Hyphomonas neptunium ATCC 15444 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_760061.1 1378444 D 228405 CDS YP_760062.1 114797987 4289308 1379819..1380304 1 NC_008358.1 identified by similarity to GB:AAK24320.1; hypothetical protein 1380304 4289308 HNE_1345 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760062.1 1379819 D 228405 CDS YP_760063.1 114797246 4288444 1380402..1381700 1 NC_008358.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase 1381700 hisD 4288444 hisD Hyphomonas neptunium ATCC 15444 histidinol dehydrogenase YP_760063.1 1380402 D 228405 CDS YP_760064.1 114800489 4289442 1381705..1382193 1 NC_008358.1 identified by similarity to SP:Q8YF58; match to protein family HMM PF06793; hypothetical protein 1382193 4289442 HNE_1347 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760064.1 1381705 D 228405 CDS YP_760065.1 114797756 4288214 complement(1382160..1383161) 1 NC_008358.1 identified by similarity to GB:CAD17123.1; match to protein family HMM PF01370; hypothetical protein 1383161 4288214 HNE_1348 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760065.1 1382160 R 228405 CDS YP_760066.1 114800127 4290460 1383258..1384166 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1384166 4290460 HNE_1349 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760066.1 1383258 D 228405 CDS YP_760067.1 114797395 4287091 complement(1384163..1384987) 1 NC_008358.1 identified by match to protein family HMM PF00487; fatty acid desaturase family protein 1384987 4287091 HNE_1350 Hyphomonas neptunium ATCC 15444 fatty acid desaturase family protein YP_760067.1 1384163 R 228405 CDS YP_760068.1 114797523 4289484 complement(1385023..1385238) 1 NC_008358.1 hypothetical protein 1385238 4289484 HNE_1351 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760068.1 1385023 R 228405 CDS YP_760069.1 114798502 4287755 complement(1385302..1386189) 1 NC_008358.1 identified by match to protein family HMM PF04397; putative DNA-binding protein 1386189 4287755 HNE_1352 Hyphomonas neptunium ATCC 15444 putative DNA-binding protein YP_760069.1 1385302 R 228405 CDS YP_760070.1 114799556 4288541 1386300..1387472 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 1387472 4288541 HNE_1353 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_760070.1 1386300 D 228405 CDS YP_760071.1 114800246 4287481 1387584..1387802 1 NC_008358.1 identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008; translation initiation factor IF-1 1387802 infA 4287481 infA Hyphomonas neptunium ATCC 15444 translation initiation factor IF-1 YP_760071.1 1387584 D 228405 CDS YP_760072.1 114797086 4287367 1387808..1388383 1 NC_008358.1 identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 1388383 maf 4287367 maf Hyphomonas neptunium ATCC 15444 maf protein YP_760072.1 1387808 D 228405 CDS YP_760073.1 114798653 4290399 1388510..1389271 1 NC_008358.1 hypothetical protein 1389271 4290399 HNE_1356 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760073.1 1388510 D 228405 CDS YP_760074.1 114797234 4287340 complement(1389359..1389706) 1 NC_008358.1 hypothetical protein 1389706 4287340 HNE_1357 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760074.1 1389359 R 228405 CDS YP_760075.1 114797984 4289305 complement(1389720..1390256) 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 1390256 4289305 HNE_1358 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_760075.1 1389720 R 228405 CDS YP_760076.1 114800493 4289446 1390564..1390713 1 NC_008358.1 hypothetical protein 1390713 4289446 HNE_1359 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760076.1 1390564 D 228405 CDS YP_760077.1 114797931 4287905 1390847..1391560 1 NC_008358.1 identified by similarity to GB:AAK22293.1; hypothetical protein 1391560 4287905 HNE_1360 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760077.1 1390847 D 228405 CDS YP_760078.1 114797207 4289924 1391624..1391941 1 NC_008358.1 putative lipoprotein 1391941 4289924 HNE_1361 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760078.1 1391624 D 228405 CDS YP_760079.1 114797616 4288638 1392063..1392338 1 NC_008358.1 hypothetical protein 1392338 4288638 HNE_1362 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760079.1 1392063 D 228405 CDS YP_760080.1 114799093 4289192 1392447..1392833 1 NC_008358.1 identified by similarity to GB:AAK22297.1; hypothetical protein 1392833 4289192 HNE_1363 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760080.1 1392447 D 228405 CDS YP_760081.1 114800402 4290346 1393000..1394346 1 NC_008358.1 identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 1394346 pmbA 4290346 pmbA Hyphomonas neptunium ATCC 15444 pmbA protein YP_760081.1 1393000 D 228405 CDS YP_760082.1 114799663 4288685 1394375..1395469 1 NC_008358.1 identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1395469 4288685 HNE_1365 Hyphomonas neptunium ATCC 15444 inositol monophosphatase family protein YP_760082.1 1394375 D 228405 CDS YP_760083.1 114797958 4289570 1395420..1397246 1 NC_008358.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; efflux ABC transporter permease/ATP-binding protein 1397246 4289570 HNE_1366 Hyphomonas neptunium ATCC 15444 efflux ABC transporter permease/ATP-binding protein YP_760083.1 1395420 D 228405 CDS YP_760084.1 114797219 4289936 complement(1397251..1397916) 1 NC_008358.1 identified by similarity to GB:AAC18100.1; match to protein family HMM PF01323; putative frnE protein 1397916 4289936 HNE_1367 Hyphomonas neptunium ATCC 15444 putative frnE protein YP_760084.1 1397251 R 228405 CDS YP_760085.1 114799354 4288124 complement(1397975..1399102) 1 NC_008358.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate polyprenyltransferase 1399102 ubiA 4288124 ubiA Hyphomonas neptunium ATCC 15444 4-hydroxybenzoate polyprenyltransferase YP_760085.1 1397975 R 228405 CDS YP_760086.1 114800139 4290472 1399220..1399990 1 NC_008358.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1399990 4290472 HNE_1369 Hyphomonas neptunium ATCC 15444 16S ribosomal RNA methyltransferase RsmE YP_760086.1 1399220 D 228405 CDS YP_760087.1 114797331 4289409 complement(1400058..1401248) 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1401248 4289409 HNE_1370 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_760087.1 1400058 R 228405 CDS YP_760088.1 114798006 4290062 complement(1401263..1402297) 1 NC_008358.1 identified by match to protein family HMM PF00248; dimethylsulfoxide reductase chain B 1402297 4290062 HNE_1371 Hyphomonas neptunium ATCC 15444 dimethylsulfoxide reductase chain B YP_760088.1 1401263 R 228405 CDS YP_760089.1 114799792 4289809 1402384..1403286 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1403286 4289809 HNE_1372 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760089.1 1402384 D 228405 CDS YP_760090.1 114800381 4288744 complement(1403307..1403837) 1 NC_008358.1 identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein 1403837 4288744 HNE_1373 Hyphomonas neptunium ATCC 15444 riboflavin biosynthesis protein RibD domain-containing protein YP_760090.1 1403307 R 228405 CDS YP_760091.1 114797614 4288326 1404174..1405550 1 NC_008358.1 identified by match to protein family HMM PF04107; match to protein family HMM TIGR01436; glutamate--cysteine ligase 1405550 4288326 HNE_1374 Hyphomonas neptunium ATCC 15444 glutamate--cysteine ligase YP_760091.1 1404174 D 228405 CDS YP_760092.1 114798387 4288379 1405589..1406263 1 NC_008358.1 identified by similarity to GB:BAC90439.1; match to protein family HMM PF02586; hypothetical protein 1406263 4288379 HNE_1375 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760092.1 1405589 D 228405 CDS YP_760093.1 114800217 4288991 1406411..1408435 1 NC_008358.1 identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924; proton/peptide symporter family protein 1408435 4288991 HNE_1376 Hyphomonas neptunium ATCC 15444 proton/peptide symporter family protein YP_760093.1 1406411 D 228405 CDS YP_760094.1 114797476 4288421 complement(1408518..1409804) 1 NC_008358.1 identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 1409804 4288421 HNE_1377 Hyphomonas neptunium ATCC 15444 small conductance mechanosensitive ion channel (MscS) family protein YP_760094.1 1408518 R 228405 CDS YP_760095.1 114798241 4288934 complement(1409910..1410446) 1 NC_008358.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 1410446 4288934 HNE_1378 Hyphomonas neptunium ATCC 15444 RNA pseudouridine synthase family protein YP_760095.1 1409910 R 228405 CDS YP_760096.1 114799018 4287535 1410647..1411003 1 NC_008358.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1411003 panD 4287535 panD Hyphomonas neptunium ATCC 15444 aspartate alpha-decarboxylase YP_760096.1 1410647 D 228405 CDS YP_760097.1 114798946 4289645 complement(1411034..1411495) 1 NC_008358.1 identified by similarity to SP:P13111; match to protein family HMM PF00376; MerR family transcriptional regulator 1411495 4289645 HNE_1380 Hyphomonas neptunium ATCC 15444 MerR family transcriptional regulator YP_760097.1 1411034 R 228405 CDS YP_760098.1 114799712 4289130 1411500..1412294 1 NC_008358.1 hypothetical protein 1412294 4289130 HNE_1381 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760098.1 1411500 D 228405 CDS YP_760099.1 114798770 4289835 complement(1412331..1413335) 1 NC_008358.1 identified by match to protein family HMM PF00296; luciferase family monooxygenase 1413335 4289835 HNE_1382 Hyphomonas neptunium ATCC 15444 luciferase family monooxygenase YP_760099.1 1412331 R 228405 CDS YP_760100.1 114799553 4288538 complement(1413457..1414503) 1 NC_008358.1 identified by similarity to GB:AAK22478.1; match to protein family HMM PF02636; hypothetical protein 1414503 4288538 HNE_1383 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760100.1 1413457 R 228405 CDS YP_760101.1 114797621 4288643 complement(1414500..1415429) 1 NC_008358.1 identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 1415429 lgt 4288643 lgt Hyphomonas neptunium ATCC 15444 prolipoprotein diacylglyceryl transferase YP_760101.1 1414500 R 228405 CDS YP_760102.1 114798170 4287659 1415537..1415791 1 NC_008358.1 hypothetical protein 1415791 4287659 HNE_1385 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760102.1 1415537 D 228405 CDS YP_760103.1 114798921 4287865 1415903..1416406 1 NC_008358.1 identified by similarity to GB:AAK22480.1; hypothetical protein 1416406 4287865 HNE_1386 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760103.1 1415903 D 228405 CDS YP_760104.1 114799869 4287451 1416416..1417222 1 NC_008358.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1417222 proC 4287451 proC Hyphomonas neptunium ATCC 15444 pyrroline-5-carboxylate reductase YP_760104.1 1416416 D 228405 CDS YP_760105.1 114797672 4288150 1417243..1417869 1 NC_008358.1 hypothetical protein 1417869 4288150 HNE_1388 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760105.1 1417243 D 228405 CDS YP_760106.1 114799215 4289584 1417866..1418957 1 NC_008358.1 identified by similarity to GB:BAD57439.1; hypothetical protein 1418957 4289584 HNE_1389 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760106.1 1417866 D 228405 CDS YP_760107.1 114798007 4290063 1419207..1419512 1 NC_008358.1 identified by similarity to PIR:E97651; match to protein family HMM PF06627; hypothetical protein 1419512 4290063 HNE_1390 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760107.1 1419207 D 228405 CDS YP_760108.1 114800453 4288195 1419609..1420277 1 NC_008358.1 hypothetical protein 1420277 4288195 HNE_1391 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760108.1 1419609 D 228405 CDS YP_760109.1 114799668 4288690 1420274..1421230 1 NC_008358.1 identified by similarity to GB:AAF35849.1; match to protein family HMM PF01706; putative flagellar motor switch protein FliG 1421230 4288690 HNE_1392 Hyphomonas neptunium ATCC 15444 putative flagellar motor switch protein FliG YP_760109.1 1420274 D 228405 CDS YP_760110.1 114798466 4287701 1421230..1421643 1 NC_008358.1 hypothetical protein 1421643 4287701 HNE_1393 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760110.1 1421230 D 228405 CDS YP_760111.1 114797692 4287898 1421640..1421909 1 NC_008358.1 identified by similarity to GB:AAA23038.1; match to protein family HMM PF01052; match to protein family HMM TIGR02480; flagellar motor switch protein FliN 1421909 fliN 4287898 fliN Hyphomonas neptunium ATCC 15444 flagellar motor switch protein FliN YP_760111.1 1421640 D 228405 CDS YP_760112.1 114798396 4289737 1421958..1422839 1 NC_008358.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1422839 phhA 4289737 phhA Hyphomonas neptunium ATCC 15444 phenylalanine 4-monooxygenase YP_760112.1 1421958 D 228405 CDS YP_760113.1 114797549 4287384 complement(1422836..1423459) 1 NC_008358.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1423459 pth 4287384 pth Hyphomonas neptunium ATCC 15444 peptidyl-tRNA hydrolase YP_760113.1 1422836 R 228405 CDS YP_760114.1 114797515 4287645 complement(1423542..1424201) 1 NC_008358.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1424201 4287645 HNE_1397 Hyphomonas neptunium ATCC 15444 50S ribosomal protein L25/general stress protein Ctc YP_760114.1 1423542 R 228405 CDS YP_760115.1 114798544 4288109 complement(1424368..1425291) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 1425291 4288109 HNE_1398 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_760115.1 1424368 R 228405 CDS YP_760116.1 114799486 4289177 complement(1425405..1426397) 1 NC_008358.1 identified by match to protein family HMM PF04909; amidohydrolase family protein 1426397 4289177 HNE_1399 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_760116.1 1425405 R 228405 CDS YP_760117.1 114800479 4289432 1426597..1426875 1 NC_008358.1 hypothetical protein 1426875 4289432 HNE_1400 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760117.1 1426597 D 228405 CDS YP_760118.1 114797134 4288351 1426885..1428666 1 NC_008358.1 identified by match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein 1428666 4288351 HNE_1401 Hyphomonas neptunium ATCC 15444 solute/sodium symporter (SSS) family protein YP_760118.1 1426885 D 228405 CDS YP_760119.1 114798116 4289611 1428780..1430726 1 NC_008358.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 1430726 acsA 4289611 acsA Hyphomonas neptunium ATCC 15444 acetate--CoA ligase YP_760119.1 1428780 D 228405 CDS YP_760120.1 114797096 4287963 1430821..1431798 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1431798 4287963 HNE_1403 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_760120.1 1430821 D 228405 CDS YP_760121.1 114798077 4287857 complement(1431795..1433429) 1 NC_008358.1 identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase ChvG 1433429 chvG 4287857 chvG Hyphomonas neptunium ATCC 15444 sensor histidine kinase ChvG YP_760121.1 1431795 R 228405 CDS YP_760122.1 114798998 4288430 complement(1433429..1433893) 1 NC_008358.1 identified by match to protein family HMM PF00160; putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1433893 4288430 HNE_1405 Hyphomonas neptunium ATCC 15444 putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_760122.1 1433429 R 228405 CDS YP_760123.1 114797907 4287257 1434011..1434484 1 NC_008358.1 hypothetical protein 1434484 4287257 HNE_1406 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760123.1 1434011 D 228405 CDS YP_760124.1 114798655 4290401 complement(1434481..1435080) 1 NC_008358.1 hypothetical protein 1435080 4290401 HNE_1407 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760124.1 1434481 R 228405 CDS YP_760125.1 114798039 4287194 complement(1435034..1435810) 1 NC_008358.1 identified by similarity to SP:P50350; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ChvI 1435810 chvI 4287194 chvI Hyphomonas neptunium ATCC 15444 DNA-binding response regulator ChvI YP_760125.1 1435034 R 228405 CDS YP_760126.1 114798912 4288498 complement(1435952..1436968) 1 NC_008358.1 identified by match to protein family HMM PF00291; pyridoxal-phosphate-dependent enzyme 1436968 4288498 HNE_1409 Hyphomonas neptunium ATCC 15444 pyridoxal-phosphate-dependent enzyme YP_760126.1 1435952 R 228405 CDS YP_760127.1 114800194 4290038 1437501..1438778 1 NC_008358.1 identified by similarity to GB:CAG23089.1; match to protein family HMM TIGR01352; TonB family protein 1438778 4290038 HNE_1410 Hyphomonas neptunium ATCC 15444 TonB family protein YP_760127.1 1437501 D 228405 CDS YP_760128.1 114797337 4289415 complement(1438809..1440650) 1 NC_008358.1 identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110; dihydroxy-acid dehydratase 1440650 ilvD 4289415 ilvD Hyphomonas neptunium ATCC 15444 dihydroxy-acid dehydratase YP_760128.1 1438809 R 228405 CDS YP_760129.1 114798581 4289511 complement(1440776..1443565) 1 NC_008358.1 identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 1443565 polA 4289511 polA Hyphomonas neptunium ATCC 15444 DNA polymerase I YP_760129.1 1440776 R 228405 CDS YP_760130.1 114799565 4288550 1443734..1444207 1 NC_008358.1 hypothetical protein 1444207 4288550 HNE_1413 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760130.1 1443734 D 228405 CDS YP_760131.1 114800511 4288856 1444292..1444732 1 NC_008358.1 hypothetical protein 1444732 4288856 HNE_1414 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760131.1 1444292 D 228405 CDS YP_760132.1 114799720 4289138 1444779..1445804 1 NC_008358.1 identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase 1445804 4289138 HNE_1415 Hyphomonas neptunium ATCC 15444 L4BD family NADP-dependent oxidoreductase YP_760132.1 1444779 D 228405 CDS YP_760133.1 114799730 4289148 1445876..1446244 1 NC_008358.1 putative lipoprotein 1446244 4289148 HNE_1416 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760133.1 1445876 D 228405 CDS YP_760134.1 114798984 4288260 1446332..1447105 1 NC_008358.1 putative lipoprotein 1447105 4288260 HNE_1417 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760134.1 1446332 D 228405 CDS YP_760135.1 114798688 4289758 complement(1447108..1448277) 1 NC_008358.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324; cystathionine beta-lyase 1448277 metC 4289758 metC Hyphomonas neptunium ATCC 15444 cystathionine beta-lyase YP_760135.1 1447108 R 228405 CDS YP_760136.1 114797517 4287647 complement(1448282..1449124) 1 NC_008358.1 identified by match to protein family HMM PF00581; putative sulfurtransferase 1449124 4287647 HNE_1419 Hyphomonas neptunium ATCC 15444 putative sulfurtransferase YP_760136.1 1448282 R 228405 CDS YP_760137.1 114800279 4287924 complement(1449124..1450131) 1 NC_008358.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 1450131 4287924 HNE_1420 Hyphomonas neptunium ATCC 15444 cysteine synthase A YP_760137.1 1449124 R 228405 CDS YP_760138.1 114799968 4290182 1450124..1450972 1 NC_008358.1 hypothetical protein 1450972 4290182 HNE_1421 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760138.1 1450124 D 228405 CDS YP_760139.1 114797588 4286993 1450991..1452529 1 NC_008358.1 identified by match to protein family HMM PF04244; deoxyribodipyrimidine photolyase-like protein 1452529 4286993 HNE_1422 Hyphomonas neptunium ATCC 15444 deoxyribodipyrimidine photolyase-like protein YP_760139.1 1450991 D 228405 CDS YP_760140.1 114800534 4288879 1452665..1455043 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; putative sensory box-containing diguanylate cyclase 1455043 4288879 HNE_1423 Hyphomonas neptunium ATCC 15444 putative sensory box-containing diguanylate cyclase YP_760140.1 1452665 D 228405 CDS YP_760141.1 114799535 4288928 complement(1455079..1457922) 1 NC_008358.1 identified by match to protein family HMM PF05170; AsmA family protein 1457922 4288928 HNE_1424 Hyphomonas neptunium ATCC 15444 AsmA family protein YP_760141.1 1455079 R 228405 CDS YP_760142.1 114797956 4289568 complement(1458379..1458489) 1 NC_008358.1 hypothetical protein 1458489 4289568 HNE_1426 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760142.1 1458379 R 228405 CDS YP_760143.1 114799273 4288588 complement(1458643..1459236) 1 NC_008358.1 identified by similarity to GB:CAH14296.1; hypothetical protein 1459236 4288588 HNE_1427 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760143.1 1458643 R 228405 CDS YP_760144.1 114797347 4287201 1459571..1459801 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 1459801 4287201 HNE_1428 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_760144.1 1459571 D 228405 CDS YP_760145.1 114798352 4288635 complement(1459912..1460214) 1 NC_008358.1 hypothetical protein 1460214 4288635 HNE_1429 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760145.1 1459912 R 228405 CDS YP_760146.1 114798464 4287699 1460242..1461351 1 NC_008358.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1461351 4287699 HNE_1430 Hyphomonas neptunium ATCC 15444 phage integrase family site specific recombinase YP_760146.1 1460242 D 228405 CDS YP_760147.1 114798358 4290415 complement(1461493..1462122) 1 NC_008358.1 putative lipoprotein 1462122 4290415 HNE_1431 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760147.1 1461493 R 228405 CDS YP_760148.1 114797292 4289216 complement(1462127..1463761) 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family membrane protein 1463761 4289216 HNE_1432 Hyphomonas neptunium ATCC 15444 OmpA family membrane protein YP_760148.1 1462127 R 228405 CDS YP_760149.1 114799883 4287466 complement(1463761..1465443) 1 NC_008358.1 hypothetical protein 1465443 4287466 HNE_1433 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760149.1 1463761 R 228405 CDS YP_760150.1 114798062 4287842 1465973..1466209 1 NC_008358.1 hypothetical protein 1466209 4287842 HNE_1434 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760150.1 1465973 D 228405 CDS YP_760151.1 114797098 4287965 1466483..1467235 1 NC_008358.1 identified by similarity to SP:P50197; match to protein family HMM PF00106; short chain dehydrogenase 1467235 linC 4287965 linC Hyphomonas neptunium ATCC 15444 short chain dehydrogenase YP_760151.1 1466483 D 228405 CDS YP_760152.1 114800203 4288977 complement(1467367..1469118) 1 NC_008358.1 identified by similarity to GB:BAA24454.1; match to protein family HMM PF00743; putative steroid monooxygenase 1469118 4288977 HNE_1436 Hyphomonas neptunium ATCC 15444 putative steroid monooxygenase YP_760152.1 1467367 R 228405 CDS YP_760153.1 114797655 4288133 complement(1469285..1470403) 1 NC_008358.1 hypothetical protein 1470403 4288133 HNE_1437 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760153.1 1469285 R 228405 CDS YP_760154.1 114798451 4290313 1469597..1470634 1 NC_008358.1 hypothetical protein 1470634 4290313 HNE_1438 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760154.1 1469597 D 228405 CDS YP_760155.1 114800030 4288822 complement(1470648..1470902) 1 NC_008358.1 hypothetical protein 1470902 4288822 HNE_1439 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760155.1 1470648 R 228405 CDS YP_760156.1 114798037 4287192 complement(1470924..1471232) 1 NC_008358.1 identified by similarity to PIR:AD3172; match to protein family HMM PF05284; hypothetical protein 1471232 4287192 HNE_1440 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760156.1 1470924 R 228405 CDS YP_760157.1 114799684 4288706 1471568..1471813 1 NC_008358.1 hypothetical protein 1471813 4288706 HNE_1441 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760157.1 1471568 D 228405 CDS YP_760158.1 114800466 4288208 1471810..1472061 1 NC_008358.1 hypothetical protein 1472061 4288208 HNE_1442 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760158.1 1471810 D 228405 CDS YP_760159.1 114797750 4288287 1472225..1473259 1 NC_008358.1 identified by similarity to GB:AAK22927.1; hypothetical protein 1473259 4288287 HNE_1443 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760159.1 1472225 D 228405 CDS YP_760160.1 114797466 4288411 1473828..1474667 1 NC_008358.1 identified by similarity to GB:BAB52523.1; hypothetical protein 1474667 4288411 HNE_1444 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760160.1 1473828 D 228405 CDS YP_760161.1 114798235 4288616 1474788..1476200 1 NC_008358.1 identified by match to protein family HMM PF02534; TraG/TraD family protein 1476200 4288616 HNE_1445 Hyphomonas neptunium ATCC 15444 TraG/TraD family protein YP_760161.1 1474788 D 228405 CDS YP_760162.1 114798901 4288487 1476487..1476990 1 NC_008358.1 identified by match to protein family HMM PF00565; nuclease domain-containing protein 1476990 4288487 HNE_1447 Hyphomonas neptunium ATCC 15444 nuclease domain-containing protein YP_760162.1 1476487 D 228405 CDS YP_760163.1 114797601 4288313 complement(1476997..1477329) 1 NC_008358.1 identified by similarity to GB:AAV96142.1; hypothetical protein 1477329 4288313 HNE_1448 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760163.1 1476997 R 228405 CDS YP_760164.1 114798675 4289856 1477320..1477733 1 NC_008358.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1477733 4289856 HNE_1449 Hyphomonas neptunium ATCC 15444 LuxR family transcriptional regulator YP_760164.1 1477320 D 228405 CDS YP_760165.1 114800251 4287486 complement(1478108..1478332) 1 NC_008358.1 hypothetical protein 1478332 4287486 HNE_1450 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760165.1 1478108 R 228405 CDS YP_760166.1 114799458 4289674 complement(1478338..1479855) 1 NC_008358.1 identified by match to protein family HMM PF00890; FAD-binding domain-containing protein 1479855 4289674 HNE_1451 Hyphomonas neptunium ATCC 15444 FAD-binding domain-containing protein YP_760166.1 1478338 R 228405 CDS YP_760167.1 114797125 4287153 1479887..1480837 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1480837 4287153 HNE_1452 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760167.1 1479887 D 228405 CDS YP_760168.1 114797904 4288092 complement(1480851..1481159) 1 NC_008358.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1481159 4288092 HNE_1453 Hyphomonas neptunium ATCC 15444 YciI-like protein YP_760168.1 1480851 R 228405 CDS YP_760169.1 114800110 4289993 complement(1481195..1481878) 1 NC_008358.1 hypothetical protein 1481878 4289993 HNE_1454 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760169.1 1481195 R 228405 CDS YP_760170.1 114799129 4287783 complement(1481851..1482645) 1 NC_008358.1 hypothetical protein 1482645 4287783 HNE_1455 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760170.1 1481851 R 228405 CDS YP_760171.1 114798114 4289609 complement(1482988..1484316) 1 NC_008358.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 1484316 4289609 HNE_1456 Hyphomonas neptunium ATCC 15444 endonuclease/exonuclease/phosphatase family protein YP_760171.1 1482988 R 228405 CDS YP_760172.1 114797069 4287037 1484477..1484713 1 NC_008358.1 hypothetical protein 1484713 4287037 HNE_1457 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760172.1 1484477 D 228405 CDS YP_760173.1 114798482 4288765 complement(1484703..1484903) 1 NC_008358.1 hypothetical protein 1484903 4288765 HNE_1458 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760173.1 1484703 R 228405 CDS YP_760174.1 114800130 4290463 1485031..1485963 1 NC_008358.1 identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1485963 4290463 HNE_1459 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760174.1 1485031 D 228405 CDS YP_760175.1 114797111 4287139 complement(1485972..1486259) 1 NC_008358.1 identified by similarity to GB:BAC45755.1; match to protein family HMM PF07045; hypothetical protein 1486259 4287139 HNE_1460 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760175.1 1485972 R 228405 CDS YP_760176.1 114799791 4289808 complement(1486256..1486660) 1 NC_008358.1 hypothetical protein 1486660 4289808 HNE_1461 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760176.1 1486256 R 228405 CDS YP_760177.1 114798994 4288426 1486865..1487320 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 1487320 4288426 HNE_1462 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_760177.1 1486865 D 228405 CDS YP_760178.1 114799567 4288552 1487378..1487842 1 NC_008358.1 identified by match to protein family HMM PF07883; cupin domain-containing protein 1487842 4288552 HNE_1463 Hyphomonas neptunium ATCC 15444 cupin domain-containing protein YP_760178.1 1487378 D 228405 CDS YP_760179.1 114799943 4290098 complement(1488591..1489853) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1489853 4290098 HNE_1465 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760179.1 1488591 R 228405 CDS YP_760180.1 114798936 4289635 1490094..1492463 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB dependent receptor 1492463 4289635 HNE_1466 Hyphomonas neptunium ATCC 15444 putative TonB dependent receptor YP_760180.1 1490094 D 228405 CDS YP_760181.1 114798594 4290497 1492582..1493844 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 1493844 4290497 HNE_1467 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_760181.1 1492582 D 228405 CDS YP_760182.1 114799401 4289538 1494075..1494995 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1494995 4289538 HNE_1468 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760182.1 1494075 D 228405 CDS YP_760183.1 114798151 4290384 complement(1495006..1495707) 1 NC_008358.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 1495707 4290384 HNE_1469 Hyphomonas neptunium ATCC 15444 cyclic nucleotide-binding protein YP_760183.1 1495006 R 228405 CDS YP_760184.1 114797811 4288464 1495892..1498114 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB dependent receptor 1498114 4288464 HNE_1470 Hyphomonas neptunium ATCC 15444 putative TonB dependent receptor YP_760184.1 1495892 D 228405 CDS YP_760185.1 114797255 4288453 1498175..1499554 1 NC_008358.1 identified by similarity to OMNI:PIN0532; hypothetical protein 1499554 4288453 HNE_1471 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760185.1 1498175 D 228405 CDS YP_760186.1 114800049 4289372 1499592..1499900 1 NC_008358.1 identified by similarity to GB:CAE31223.1; hypothetical protein 1499900 4289372 HNE_1472 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760186.1 1499592 D 228405 CDS YP_760187.1 114799085 4287739 1499960..1500718 1 NC_008358.1 identified by match to protein family HMM PF00596; class II aldolase 1500718 4287739 HNE_1473 Hyphomonas neptunium ATCC 15444 class II aldolase YP_760187.1 1499960 D 228405 CDS YP_760188.1 114798526 4290331 1500784..1502181 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1502181 4290331 HNE_1474 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_760188.1 1500784 D 228405 CDS YP_760189.1 114797371 4287302 complement(1502482..1503495) 1 NC_008358.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 1503495 4287302 HNE_1475 Hyphomonas neptunium ATCC 15444 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_760189.1 1502482 R 228405 CDS YP_760190.1 114800104 4289987 complement(1503517..1504122) 1 NC_008358.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 1504122 leuD 4289987 leuD Hyphomonas neptunium ATCC 15444 3-isopropylmalate dehydratase small subunit YP_760190.1 1503517 R 228405 CDS YP_760191.1 114798881 4287572 complement(1504112..1505542) 1 NC_008358.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1505542 leuC2 4287572 leuC2 Hyphomonas neptunium ATCC 15444 isopropylmalate isomerase large subunit YP_760191.1 1504112 R 228405 CDS YP_760192.1 114797983 4288346 1505634..1505747 1 NC_008358.1 hypothetical protein 1505747 4288346 HNE_1478 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760192.1 1505634 D 228405 CDS YP_760193.1 114797316 4287521 complement(1505868..1507838) 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1507838 4287521 HNE_1479 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_760193.1 1505868 R 228405 CDS YP_760194.1 114800439 4288181 complement(1508304..1508531) 1 NC_008358.1 hypothetical protein 1508531 4288181 HNE_1480 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760194.1 1508304 R 228405 CDS YP_760195.1 114798855 4287819 complement(1508639..1509217) 1 NC_008358.1 identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713; hypothetical protein 1509217 4287819 HNE_1481 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760195.1 1508639 R 228405 CDS YP_760196.1 114798385 4288377 complement(1509436..1510770) 1 NC_008358.1 identified by similarity to GB:CAI09940.1; hypothetical protein 1510770 4288377 HNE_1482 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760196.1 1509436 R 228405 CDS YP_760197.1 114797834 4288778 complement(1511028..1513418) 1 NC_008358.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1513418 4288778 HNE_1483 Hyphomonas neptunium ATCC 15444 copper-translocating P-type ATPase YP_760197.1 1511028 R 228405 CDS YP_760198.1 114797294 4289218 complement(1513670..1514467) 1 NC_008358.1 identified by match to protein family HMM PF05275; copper resistance protein B 1514467 copB 4289218 copB Hyphomonas neptunium ATCC 15444 copper resistance protein B YP_760198.1 1513670 R 228405 CDS YP_760199.1 114798342 4288625 complement(1514467..1516311) 1 NC_008358.1 identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; CopA family copper resistance protein 1516311 4288625 HNE_1485 Hyphomonas neptunium ATCC 15444 CopA family copper resistance protein YP_760199.1 1514467 R 228405 CDS YP_760200.1 114798721 4290449 complement(1516382..1517089) 1 NC_008358.1 identified by similarity to SP:P77214; hypothetical protein 1517089 4290449 HNE_1486 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760200.1 1516382 R 228405 CDS YP_760201.1 114799886 4287469 1517631..1517906 1 NC_008358.1 identified by similarity to GB:CAE27102.1; match to protein family HMM PF02583; hypothetical protein 1517906 4287469 HNE_1487 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760201.1 1517631 D 228405 CDS YP_760202.1 114799673 4288695 complement(1517957..1518115) 1 NC_008358.1 hypothetical protein 1518115 4288695 HNE_1488 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760202.1 1517957 R 228405 CDS YP_760203.1 114798432 4290294 complement(1518165..1519211) 1 NC_008358.1 identified by similarity to GB:AAK22927.1; hypothetical protein 1519211 4290294 HNE_1489 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760203.1 1518165 R 228405 CDS YP_760204.1 114797952 4289564 1519664..1521649 1 NC_008358.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 1521649 4289564 HNE_1490 Hyphomonas neptunium ATCC 15444 choline/carnitine/betaine transporter YP_760204.1 1519664 D 228405 CDS YP_760205.1 114800459 4288201 1521965..1522825 1 NC_008358.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin family protein 1522825 4288201 HNE_1491 Hyphomonas neptunium ATCC 15444 pirin family protein YP_760205.1 1521965 D 228405 CDS YP_760206.1 114799249 4289679 complement(1522946..1524025) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1524025 4289679 HNE_1492 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_760206.1 1522946 R 228405 CDS YP_760207.1 114797944 4287918 complement(1524067..1525185) 1 NC_008358.1 identified by similarity to SP:P39849; match to protein family HMM PF00107; aryl-alcohol dehydrogenase 1525185 4287918 HNE_1493 Hyphomonas neptunium ATCC 15444 aryl-alcohol dehydrogenase YP_760207.1 1524067 R 228405 CDS YP_760208.1 114797657 4288135 1525355..1526254 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1526254 4288135 HNE_1494 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760208.1 1525355 D 228405 CDS YP_760209.1 114799531 4288924 1527234..1527800 1 NC_008358.1 identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein 1527800 4288924 HNE_1495 Hyphomonas neptunium ATCC 15444 ECF sigma factor family protein YP_760209.1 1527234 D 228405 CDS YP_760210.1 114800033 4288825 1527903..1530389 1 NC_008358.1 identified by match to protein family HMM PF00069; serine/threonine protein kinase 1530389 4288825 HNE_1496 Hyphomonas neptunium ATCC 15444 serine/threonine protein kinase YP_760210.1 1527903 D 228405 CDS YP_760211.1 114797869 4288659 1530514..1530867 1 NC_008358.1 identified by similarity to GB:AAT29983.1; hypothetical protein 1530867 4288659 HNE_1497 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760211.1 1530514 D 228405 CDS YP_760212.1 114798690 4289760 1530923..1531399 1 NC_008358.1 putative lipoprotein 1531399 4289760 HNE_1498 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760212.1 1530923 D 228405 CDS YP_760213.1 114800470 4289423 1531468..1531932 1 NC_008358.1 putative lipoprotein 1531932 4289423 HNE_1499 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760213.1 1531468 D 228405 CDS YP_760214.1 114799544 4288529 1531947..1532510 1 NC_008358.1 putative lipoprotein 1532510 4288529 HNE_1500 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760214.1 1531947 D 228405 CDS YP_760215.1 114798032 4287187 complement(1532579..1533145) 1 NC_008358.1 putative lipoprotein 1533145 4287187 HNE_1501 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760215.1 1532579 R 228405 CDS YP_760216.1 114797141 4288358 complement(1533186..1533989) 1 NC_008358.1 hypothetical protein 1533989 4288358 HNE_1502 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760216.1 1533186 R 228405 CDS YP_760217.1 114800061 4289384 1534122..1537250 1 NC_008358.1 identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1537250 4289384 HNE_1503 Hyphomonas neptunium ATCC 15444 Tat pathway signal sequence domain-containing protein YP_760217.1 1534122 D 228405 CDS YP_760218.1 114800265 4287500 complement(1538187..1538804) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1538804 4287500 HNE_1505 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760218.1 1538187 R 228405 CDS YP_760219.1 114798045 4289520 1538885..1539376 1 NC_008358.1 hypothetical protein 1539376 4289520 HNE_1506 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760219.1 1538885 D 228405 CDS YP_760220.1 114797095 4287962 complement(1540249..1541190) 1 NC_008358.1 identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1541190 4287962 HNE_1507 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_760220.1 1540249 R 228405 CDS YP_760221.1 114800094 4289977 complement(1541190..1544024) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; sensor histidine kinase/response regulator 1544024 4289977 HNE_1508 Hyphomonas neptunium ATCC 15444 sensor histidine kinase/response regulator YP_760221.1 1541190 R 228405 CDS YP_760222.1 114799067 4288966 complement(1544021..1544410) 1 NC_008358.1 hypothetical protein 1544410 4288966 HNE_1509 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760222.1 1544021 R 228405 CDS YP_760223.1 114799398 4288520 1545079..1546086 1 NC_008358.1 identified by match to protein family HMM PF02277; putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT 1546086 4288520 HNE_1510 Hyphomonas neptunium ATCC 15444 putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT YP_760223.1 1545079 D 228405 CDS YP_760224.1 114798325 4287108 1546083..1546841 1 NC_008358.1 identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317; cobalamin 5'-phosphate synthase 1546841 4287108 HNE_1511 Hyphomonas neptunium ATCC 15444 cobalamin 5'-phosphate synthase YP_760224.1 1546083 D 228405 CDS YP_760225.1 114797780 4289624 1546832..1547350 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1547350 4289624 HNE_1512 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_760225.1 1546832 D 228405 CDS YP_760226.1 114800288 4287933 1547362..1547964 1 NC_008358.1 identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708; cob(I)alamin adenosyltransferase 1547964 cobO 4287933 cobO Hyphomonas neptunium ATCC 15444 cob(I)alamin adenosyltransferase YP_760226.1 1547362 D 228405 CDS YP_760227.1 114798415 4288154 1548377..1550224 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1550224 4288154 HNE_1514 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760227.1 1548377 D 228405 CDS YP_760228.1 114799541 4288526 1550234..1551079 1 NC_008358.1 Part of the evidence for the annotation of this gene is based on presence of the gene in a cluster of genes with related functions.; putative iron ABC transporter periplasmic iron-binding protein 1551079 4288526 HNE_1515 Hyphomonas neptunium ATCC 15444 putative iron ABC transporter periplasmic iron-binding protein YP_760228.1 1550234 D 228405 CDS YP_760229.1 114797228 4287334 1551076..1552065 1 NC_008358.1 identified by match to protein family HMM PF01032; iron compound ABC transporter permease 1552065 4287334 HNE_1516 Hyphomonas neptunium ATCC 15444 iron compound ABC transporter permease YP_760229.1 1551076 D 228405 CDS YP_760230.1 114797990 4289311 1552058..1552819 1 NC_008358.1 identified by similarity to SP:P07821; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1552819 4289311 HNE_1517 Hyphomonas neptunium ATCC 15444 iron compound ABC transporter ATP-binding protein YP_760230.1 1552058 D 228405 CDS YP_760231.1 114797305 4287510 1553199..1554149 1 NC_008358.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 1554149 cobD 4287510 cobD Hyphomonas neptunium ATCC 15444 cobalamin biosynthesis protein CobD YP_760231.1 1553199 D 228405 CDS YP_760232.1 114798819 4287549 1554146..1555138 1 NC_008358.1 identified by similarity to SP:P21633; match to protein family HMM PF00155; putative threonine-phosphate decarboxylase CobC 1555138 4287549 HNE_1520 Hyphomonas neptunium ATCC 15444 putative threonine-phosphate decarboxylase CobC YP_760232.1 1554146 D 228405 CDS YP_760233.1 114798312 4289476 complement(1555128..1555634) 1 NC_008358.1 identified by match to protein family HMM PF02283; cobinamide kinase / cobinamide phosphate guanyltransferase 1555634 cobU 4289476 cobU Hyphomonas neptunium ATCC 15444 cobinamide kinase / cobinamide phosphate guanyltransferase YP_760233.1 1555128 R 228405 CDS YP_760234.1 114799223 4289592 complement(1556123..1556773) 1 NC_008358.1 identified by similarity to SP:P05050; match to protein family HMM PF03171; alkylated DNA repair protein AlkB 1556773 alkB 4289592 alkB Hyphomonas neptunium ATCC 15444 alkylated DNA repair protein AlkB YP_760234.1 1556123 R 228405 CDS YP_760235.1 114799953 4290108 complement(1557069..1557671) 1 NC_008358.1 hypothetical protein 1557671 4290108 HNE_1523 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760235.1 1557069 R 228405 CDS YP_760236.1 114799759 4288043 complement(1557891..1558481) 1 NC_008358.1 identified by similarity to PIR:AF2169; hypothetical protein 1558481 4288043 HNE_1524 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760236.1 1557891 R 228405 CDS YP_760237.1 114797196 4287067 1558670..1559731 1 NC_008358.1 adjacent to truncated response regulator gene; identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase 1559731 4287067 HNE_1525 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_760237.1 1558670 D 228405 CDS YP_760238.1 114798738 4289301 1559901..1560758 1 NC_008358.1 identified by similarity to GB:AAS80487.1; match to protein family HMM PF05982; hypothetical protein 1560758 4289301 HNE_1527 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760238.1 1559901 D 228405 CDS YP_760239.1 114797735 4288272 1560761..1561066 1 NC_008358.1 identified by similarity to GB:AAR33835.1; hypothetical protein 1561066 4288272 HNE_1528 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760239.1 1560761 D 228405 CDS YP_760240.1 114800310 4287955 complement(1561115..1561384) 1 NC_008358.1 identified by similarity to GB:BAD70720.1; hypothetical protein 1561384 4287955 HNE_1529 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760240.1 1561115 R 228405 CDS YP_760241.1 114799257 4289687 complement(1561387..1561644) 1 NC_008358.1 hypothetical protein 1561644 4289687 HNE_1530 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760241.1 1561387 R 228405 CDS YP_760242.1 114798315 4287098 1562342..1563262 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1563262 4287098 HNE_1531 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760242.1 1562342 D 228405 CDS YP_760243.1 114797383 4287079 complement(1563868..1564659) 1 NC_008358.1 identified by match to protein family HMM PF02661; Fic family protein 1564659 4287079 HNE_1532 Hyphomonas neptunium ATCC 15444 Fic family protein YP_760243.1 1563868 R 228405 CDS YP_760244.1 114798209 4287833 1565120..1566127 1 NC_008358.1 identified by match to protein family HMM PF00529; HlyD family secretion protein 1566127 4287833 HNE_1533 Hyphomonas neptunium ATCC 15444 HlyD family secretion protein YP_760244.1 1565120 D 228405 CDS YP_760245.1 114797777 4289621 1566154..1567881 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1567881 4289621 HNE_1534 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_760245.1 1566154 D 228405 CDS YP_760246.1 114800421 4290365 1567881..1569017 1 NC_008358.1 identified by match to protein family HMM PF01061; ABC transporter permease 1569017 4290365 HNE_1535 Hyphomonas neptunium ATCC 15444 ABC transporter permease YP_760246.1 1567881 D 228405 CDS YP_760247.1 114799431 4289335 1569019..1570119 1 NC_008358.1 identified by match to protein family HMM PF01061; ABC transporter permease 1570119 4289335 HNE_1536 Hyphomonas neptunium ATCC 15444 ABC transporter permease YP_760247.1 1569019 D 228405 CDS YP_760248.1 114798028 4287183 1570120..1570773 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1570773 4287183 HNE_1537 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760248.1 1570120 D 228405 CDS YP_760249.1 114797066 4287034 complement(1570858..1571190) 1 NC_008358.1 identified by similarity to GB:CAI09590.1; hypothetical protein 1571190 4287034 HNE_1538 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760249.1 1570858 R 228405 CDS YP_760250.1 114800024 4288816 complement(1571347..1571835) 1 NC_008358.1 identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain-containing protein 1571835 4288816 HNE_1539 Hyphomonas neptunium ATCC 15444 hemerythrin HHE cation binding domain-containing protein YP_760250.1 1571347 R 228405 CDS YP_760251.1 114798557 4287401 complement(1571832..1572257) 1 NC_008358.1 identified by match to protein family HMM PF01152; hypothetical protein 1572257 4287401 HNE_1540 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760251.1 1571832 R 228405 CDS YP_760252.1 114798504 4287757 1572392..1572802 1 NC_008358.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; putative transcriptional regulator 1572802 4287757 HNE_1541 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator YP_760252.1 1572392 D 228405 CDS YP_760253.1 114797536 4289497 1572881..1573114 1 NC_008358.1 identified by similarity to GB:AAV97308.1; hypothetical protein 1573114 4289497 HNE_1542 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760253.1 1572881 D 228405 CDS YP_760254.1 114798419 4288158 1573133..1573237 1 NC_008358.1 hypothetical protein 1573237 4288158 HNE_1543 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760254.1 1573133 D 228405 CDS YP_760255.1 114800105 4289988 complement(1573227..1573349) 1 NC_008358.1 hypothetical protein 1573349 4289988 HNE_1544 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760255.1 1573227 R 228405 CDS YP_760256.1 114798949 4289648 complement(1573333..1573461) 1 NC_008358.1 hypothetical protein 1573461 4289648 HNE_1545 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760256.1 1573333 R 228405 CDS YP_760257.1 114797933 4287907 complement(1573521..1574384) 1 NC_008358.1 identified by match to protein family HMM PF01925; hypothetical protein 1574384 4287907 HNE_1546 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760257.1 1573521 R 228405 CDS YP_760258.1 114797570 4287288 1574445..1575158 1 NC_008358.1 identified by match to protein family HMM PF07298; NnrU family protein 1575158 4287288 HNE_1547 Hyphomonas neptunium ATCC 15444 NnrU family protein YP_760258.1 1574445 D 228405 CDS YP_760259.1 114800393 4290337 1575196..1575435 1 NC_008358.1 identified by match to protein family HMM PF02597; putative molybdopterin converting factor 1575435 4290337 HNE_1548 Hyphomonas neptunium ATCC 15444 putative molybdopterin converting factor YP_760259.1 1575196 D 228405 CDS YP_760260.1 114800205 4288979 1575445..1575918 1 NC_008358.1 hypothetical protein 1575918 4288979 HNE_1549 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760260.1 1575445 D 228405 CDS YP_760261.1 114799331 4290165 1575935..1576432 1 NC_008358.1 identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 1576432 moaE2 4290165 moaE2 Hyphomonas neptunium ATCC 15444 molybdopterin converting factor subunit 2 YP_760261.1 1575935 D 228405 CDS YP_760262.1 114797493 4289708 1576419..1576955 1 NC_008358.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 1576955 moaB2 4289708 moaB2 Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein B YP_760262.1 1576419 D 228405 CDS YP_760263.1 114799818 4290126 1576952..1577440 1 NC_008358.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 1577440 moaC2 4290126 moaC2 Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein C YP_760263.1 1576952 D 228405 CDS YP_760264.1 114798744 4287979 1577437..1578621 1 NC_008358.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 1578621 moeA1 4287979 moeA1 Hyphomonas neptunium ATCC 15444 molybdopterin biosynthesis protein MoeA YP_760264.1 1577437 D 228405 CDS YP_760265.1 114797389 4287085 1578652..1579029 1 NC_008358.1 identified by match to protein family HMM PF07858; limonene-1,2-epoxide hydrolase 1579029 4287085 HNE_1554 Hyphomonas neptunium ATCC 15444 limonene-1,2-epoxide hydrolase YP_760265.1 1578652 D 228405 CDS YP_760266.1 114797863 4287134 1579171..1581366 1 NC_008358.1 identified by similarity to GB:CAA73377.1; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02504; ribonucleoside-diphosphate reductase 1581366 4287134 HNE_1555 Hyphomonas neptunium ATCC 15444 ribonucleoside-diphosphate reductase YP_760266.1 1579171 D 228405 CDS YP_760267.1 114798679 4289860 1581388..1582584 1 NC_008358.1 identified by match to protein family HMM PF05940; NnrS family protein 1582584 4289860 HNE_1556 Hyphomonas neptunium ATCC 15444 NnrS family protein YP_760267.1 1581388 D 228405 CDS YP_760268.1 114797605 4288317 1582786..1583778 1 NC_008358.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1583778 moaA 4288317 moaA Hyphomonas neptunium ATCC 15444 molybdenum cofactor biosynthesis protein A YP_760268.1 1582786 D 228405 CDS YP_760269.1 114798895 4287586 complement(1583775..1584548) 1 NC_008358.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrB 1584548 ftrB 4287586 ftrB Hyphomonas neptunium ATCC 15444 transcriptional activator FtrB YP_760269.1 1583775 R 228405 CDS YP_760270.1 114798304 4289468 1584853..1587588 1 NC_008358.1 identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1587588 narK 4289468 narK Hyphomonas neptunium ATCC 15444 nitrite extrusion protein YP_760270.1 1584853 D 228405 CDS YP_760271.1 114798640 4289899 1587604..1591338 1 NC_008358.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1591338 narG 4289899 narG Hyphomonas neptunium ATCC 15444 nitrate reductase subunit alpha YP_760271.1 1587604 D 228405 CDS YP_760272.1 114797890 4288078 1591335..1592864 1 NC_008358.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660; nitrate reductase subunit beta 1592864 narH 4288078 narH Hyphomonas neptunium ATCC 15444 nitrate reductase subunit beta YP_760272.1 1591335 D 228405 CDS YP_760273.1 114800087 4289970 1592874..1593551 1 NC_008358.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1593551 narJ 4289970 narJ Hyphomonas neptunium ATCC 15444 nitrate reductase molybdenum cofactor assembly chaperone YP_760273.1 1592874 D 228405 CDS YP_760274.1 114797260 4288458 1593548..1594750 1 NC_008358.1 identified by similarity to GB:AAK22594.1; hypothetical protein 1594750 4288458 HNE_1563 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760274.1 1593548 D 228405 CDS YP_760275.1 114797366 4287297 1594775..1595545 1 NC_008358.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma 1595545 narI 4287297 narI Hyphomonas neptunium ATCC 15444 respiratory nitrate reductase subunit gamma YP_760275.1 1594775 D 228405 CDS YP_760276.1 114799875 4287458 1595542..1596660 1 NC_008358.1 identified by match to protein family HMM PF00639; putative peptidylprolyl cis-trans isomerase 1596660 4287458 HNE_1565 Hyphomonas neptunium ATCC 15444 putative peptidylprolyl cis-trans isomerase YP_760276.1 1595542 D 228405 CDS YP_760277.1 114798885 4287576 1596692..1597252 1 NC_008358.1 identified by similarity to GB:AAQ58241.1; hypothetical protein 1597252 4287576 HNE_1566 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760277.1 1596692 D 228405 CDS YP_760278.1 114798000 4289321 1597249..1597887 1 NC_008358.1 identified by match to protein family HMM PF00484; carbonic anhydrase 1597887 4289321 HNE_1567 Hyphomonas neptunium ATCC 15444 carbonic anhydrase YP_760278.1 1597249 D 228405 CDS YP_760279.1 114800441 4288183 complement(1598761..1599873) 1 NC_008358.1 identified by similarity to GB:BAC70664.1; hypothetical protein 1599873 4288183 HNE_1568 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760279.1 1598761 R 228405 CDS YP_760280.1 114799679 4288701 1600152..1600778 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1600778 4288701 HNE_1569 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760280.1 1600152 D 228405 CDS YP_760281.1 114798420 4288159 complement(1600819..1602084) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 1602084 4288159 HNE_1570 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_760281.1 1600819 R 228405 CDS YP_760282.1 114797699 4289349 1602237..1602335 1 NC_008358.1 hypothetical protein 1602335 4289349 HNE_1571 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760282.1 1602237 D 228405 CDS YP_760283.1 114798040 4287195 complement(1602374..1603984) 1 NC_008358.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199; GMC oxidoreductase 1603984 4287195 HNE_1572 Hyphomonas neptunium ATCC 15444 GMC oxidoreductase YP_760283.1 1602374 R 228405 CDS YP_760284.1 114798228 4288609 complement(1605475..1606671) 1 NC_008358.1 identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 1606671 moeA2 4288609 moeA2 Hyphomonas neptunium ATCC 15444 molybdopterin biosynthesis protein MoeA YP_760284.1 1605475 R 228405 CDS YP_760285.1 114798991 4288267 1607217..1608584 1 NC_008358.1 identified by similarity to SP:P31677; match to protein family HMM PF00982; UDP-forming alpha,alpha-trehalose-phosphate synthase 1608584 otsA 4288267 otsA Hyphomonas neptunium ATCC 15444 UDP-forming alpha,alpha-trehalose-phosphate synthase YP_760285.1 1607217 D 228405 CDS YP_760286.1 114798428 4288167 1608637..1609338 1 NC_008358.1 identified by similarity to SP:P31678; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484; trehalose-phosphatase 1609338 otsB 4288167 otsB Hyphomonas neptunium ATCC 15444 trehalose-phosphatase YP_760286.1 1608637 D 228405 CDS YP_760287.1 114799613 4289109 1609335..1611104 1 NC_008358.1 identified by match to protein family HMM PF00723; glycosyl hydrolase family protein 1611104 4289109 HNE_1577 Hyphomonas neptunium ATCC 15444 glycosyl hydrolase family protein YP_760287.1 1609335 D 228405 CDS YP_760288.1 114797441 4288561 complement(1611133..1612254) 1 NC_008358.1 identified by similarity to GB:AAK23151.1; hypothetical protein 1612254 4288561 HNE_1578 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760288.1 1611133 R 228405 CDS YP_760289.1 114798017 4290073 complement(1612283..1613005) 1 NC_008358.1 identified by match to protein family HMM PF00483; nucleotidyltransferase family protein 1613005 4290073 HNE_1579 Hyphomonas neptunium ATCC 15444 nucleotidyltransferase family protein YP_760289.1 1612283 R 228405 CDS YP_760290.1 114799011 4288443 complement(1613002..1613682) 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 1613682 4288443 HNE_1580 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_760290.1 1613002 R 228405 CDS YP_760291.1 114800452 4288194 complement(1613688..1614896) 1 NC_008358.1 putative phosphatidyltransferase 1614896 4288194 HNE_1581 Hyphomonas neptunium ATCC 15444 putative phosphatidyltransferase YP_760291.1 1613688 R 228405 CDS YP_760292.1 114797912 4287262 1614895..1615335 1 NC_008358.1 identified by similarity to GB:AAK23141.1; hypothetical protein 1615335 4287262 HNE_1582 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760292.1 1614895 D 228405 CDS YP_760293.1 114797150 4287609 complement(1615358..1616116) 1 NC_008358.1 identified by similarity to GB:AAV88731.1; hypothetical protein 1616116 4287609 HNE_1583 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760293.1 1615358 R 228405 CDS YP_760294.1 114799090 4289189 complement(1616152..1617306) 1 NC_008358.1 identified by similarity to GB:AAK23138.1; hypothetical protein 1617306 4289189 HNE_1584 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760294.1 1616152 R 228405 CDS YP_760295.1 114799914 4290244 complement(1617333..1617818) 1 NC_008358.1 identified by similarity to GB:AAM72564.1; hypothetical protein 1617818 4290244 HNE_1585 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760295.1 1617333 R 228405 CDS YP_760296.1 114797170 4287040 1617965..1619140 1 NC_008358.1 identified by match to protein family HMM PF03739; putative permease 1619140 4287040 HNE_1586 Hyphomonas neptunium ATCC 15444 putative permease YP_760296.1 1617965 D 228405 CDS YP_760297.1 114798132 4287600 1619137..1620192 1 NC_008358.1 identified by match to protein family HMM PF03739; putative permease 1620192 4287600 HNE_1587 Hyphomonas neptunium ATCC 15444 putative permease YP_760297.1 1619137 D 228405 CDS YP_760298.1 114799597 4289093 1620189..1621151 1 NC_008358.1 identified by similarity to GB:CAD84715.1; hypothetical protein 1621151 4289093 HNE_1588 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760298.1 1620189 D 228405 CDS YP_760299.1 114800425 4290369 1621148..1622074 1 NC_008358.1 identified by similarity to GB:CAD84716.1; hypothetical protein 1622074 4290369 HNE_1589 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760299.1 1621148 D 228405 CDS YP_760300.1 114797693 4289343 complement(1622095..1623288) 1 NC_008358.1 identified by similarity to GB:BAB56013.1; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01053; match to protein family HMM PF01212; putative serine C-palmitoyltransferase 1623288 4289343 HNE_1590 Hyphomonas neptunium ATCC 15444 putative serine C-palmitoyltransferase YP_760300.1 1622095 R 228405 CDS YP_760301.1 114798454 4287689 complement(1623278..1623535) 1 NC_008358.1 identified by similarity to SP:P20804; acyl carrier protein 1623535 acpP1 4287689 acpP1 Hyphomonas neptunium ATCC 15444 acyl carrier protein YP_760301.1 1623278 R 228405 CDS YP_760302.1 114797677 4287883 complement(1623501..1624493) 1 NC_008358.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; putative UDP-glucose 4-epimerase 1624493 4287883 HNE_1592 Hyphomonas neptunium ATCC 15444 putative UDP-glucose 4-epimerase YP_760302.1 1623501 R 228405 CDS YP_760303.1 114797857 4287127 complement(1624512..1626287) 1 NC_008358.1 identified by match to protein family HMM PF00501; putative AMP binding protein 1626287 4287127 HNE_1593 Hyphomonas neptunium ATCC 15444 putative AMP binding protein YP_760303.1 1624512 R 228405 CDS YP_760304.1 114798863 4289719 complement(1626486..1627790) 1 NC_008358.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein 1627790 4289719 HNE_1594 Hyphomonas neptunium ATCC 15444 polysaccharide biosynthesis family protein YP_760304.1 1626486 R 228405 CDS YP_760305.1 114799339 4290173 1628222..1629451 1 NC_008358.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1629451 4290173 HNE_1596 Hyphomonas neptunium ATCC 15444 phage integrase family site specific recombinase YP_760305.1 1628222 D 228405 CDS YP_760306.1 114800432 4288174 complement(1629582..1629812) 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 1629812 4288174 HNE_1597 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_760306.1 1629582 R 228405 CDS YP_760307.1 114797198 4287069 1629960..1630376 1 NC_008358.1 hypothetical protein 1630376 4287069 HNE_1598 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760307.1 1629960 D 228405 CDS YP_760308.1 114799629 4290269 complement(1630706..1632163) 1 NC_008358.1 hypothetical protein 1632163 4290269 HNE_1599 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760308.1 1630706 R 228405 CDS YP_760309.1 114799218 4289587 1632909..1634987 1 NC_008358.1 hypothetical protein 1634987 4289587 HNE_1600 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760309.1 1632909 D 228405 CDS YP_760310.1 114798366 4290423 1636129..1637556 1 NC_008358.1 identified by similarity to SP:P13398; match to protein family HMM PF01425; putative 6-aminohexanoate-cyclic-dimer hydrolase 1637556 4290423 HNE_1602 Hyphomonas neptunium ATCC 15444 putative 6-aminohexanoate-cyclic-dimer hydrolase YP_760310.1 1636129 D 228405 CDS YP_760311.1 114799182 4288399 complement(1637611..1638546) 1 NC_008358.1 identified by similarity to GB:CAC37457.1; putative oxidoreductase 1638546 4288399 HNE_1603 Hyphomonas neptunium ATCC 15444 putative oxidoreductase YP_760311.1 1637611 R 228405 CDS YP_760312.1 114799460 4290041 complement(1638546..1639526) 1 NC_008358.1 identified by similarity to GB:AAA23300.1; match to protein family HMM PF03435; hypothetical protein 1639526 4290041 HNE_1604 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760312.1 1638546 R 228405 CDS YP_760313.1 114797398 4287094 complement(1639523..1640170) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1640170 4287094 HNE_1605 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760313.1 1639523 R 228405 CDS YP_760314.1 114797884 4288674 1640251..1640826 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1640826 4288674 HNE_1606 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760314.1 1640251 D 228405 CDS YP_760315.1 114798686 4289755 complement(1640976..1641656) 1 NC_008358.1 identified by similarity to GB:AAS20349.1; hypothetical protein 1641656 4289755 HNE_1607 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760315.1 1640976 R 228405 CDS YP_760316.1 114799769 4288053 complement(1641813..1643819) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 1643819 4288053 HNE_1608 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_760316.1 1641813 R 228405 CDS YP_760317.1 114797864 4287135 complement(1643816..1644952) 1 NC_008358.1 identified by match to protein family HMM PF05684; hypothetical protein 1644952 4287135 HNE_1609 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760317.1 1643816 R 228405 CDS YP_760318.1 114798174 4287663 complement(1644949..1646019) 1 NC_008358.1 identified by match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 1646019 4287663 HNE_1610 Hyphomonas neptunium ATCC 15444 mandelate racemase/muconate lactonizing enzyme family protein YP_760318.1 1644949 R 228405 CDS YP_760319.1 114798992 4288268 complement(1646125..1648494) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1648494 4288268 HNE_1611 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760319.1 1646125 R 228405 CDS YP_760320.1 114800158 4290002 complement(1648558..1648662) 1 NC_008358.1 hypothetical protein 1648662 4290002 HNE_1612 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760320.1 1648558 R 228405 CDS YP_760321.1 114798269 4287249 complement(1648706..1649191) 1 NC_008358.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 1649191 4287249 HNE_1613 Hyphomonas neptunium ATCC 15444 AsnC family transcriptional regulator YP_760321.1 1648706 R 228405 CDS YP_760322.1 114800015 4288807 1649197..1649616 1 NC_008358.1 hypothetical protein 1649616 4288807 HNE_1614 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760322.1 1649197 D 228405 CDS YP_760323.1 114799095 4289194 1649609..1650697 1 NC_008358.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812; leucine dehydrogenase 1650697 ldh1 4289194 ldh1 Hyphomonas neptunium ATCC 15444 leucine dehydrogenase YP_760323.1 1649609 D 228405 CDS YP_760324.1 114798514 4290318 complement(1650787..1651632) 1 NC_008358.1 identified by match to protein family HMM PF01925; hypothetical protein 1651632 4290318 HNE_1616 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760324.1 1650787 R 228405 CDS YP_760325.1 114797594 4286999 complement(1651776..1654415) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 1654415 4286999 HNE_1617 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_760325.1 1651776 R 228405 CDS YP_760326.1 114799689 4288711 complement(1654802..1655362) 1 NC_008358.1 identified by similarity to PIR:S70540; match to protein family HMM PF03861; ANTAR domain-containing protein 1655362 4288711 HNE_1618 Hyphomonas neptunium ATCC 15444 ANTAR domain-containing protein YP_760326.1 1654802 R 228405 CDS YP_760327.1 114798465 4287700 1655524..1655661 1 NC_008358.1 hypothetical protein 1655661 4287700 HNE_1619 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760327.1 1655524 D 228405 CDS YP_760328.1 114797678 4287884 complement(1655756..1657552) 1 NC_008358.1 identified by similarity to PIR:F82984; hypothetical protein 1657552 4287884 HNE_1620 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760328.1 1655756 R 228405 CDS YP_760329.1 114797403 4287669 1657866..1658834 1 NC_008358.1 identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase 1658834 4287669 HNE_1621 Hyphomonas neptunium ATCC 15444 2-nitropropane dioxygenase YP_760329.1 1657866 D 228405 CDS YP_760330.1 114799145 4287799 complement(1658917..1660458) 1 NC_008358.1 identified by match to protein family HMM PF02534; TraG/TraD family protein 1660458 4287799 HNE_1622 Hyphomonas neptunium ATCC 15444 TraG/TraD family protein YP_760330.1 1658917 R 228405 CDS YP_760331.1 114798231 4288612 complement(1660473..1661210) 1 NC_008358.1 identified by similarity to GB:CAD84149.1; hypothetical protein 1661210 4288612 HNE_1623 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760331.1 1660473 R 228405 CDS YP_760332.1 114798697 4289767 complement(1661301..1662038) 1 NC_008358.1 identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase 1662038 sodA 4289767 sodA Hyphomonas neptunium ATCC 15444 superoxide dismutase YP_760332.1 1661301 R 228405 CDS YP_760333.1 114797707 4289357 complement(1662192..1662866) 1 NC_008358.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1662866 4289357 HNE_1625 Hyphomonas neptunium ATCC 15444 2OG-Fe(II) oxygenase YP_760333.1 1662192 R 228405 CDS YP_760334.1 114797119 4287147 1662962..1663810 1 NC_008358.1 putative lipoprotein 1663810 4287147 HNE_1626 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760334.1 1662962 D 228405 CDS YP_760335.1 114800550 4289052 complement(1663866..1664147) 1 NC_008358.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1664147 4289052 HNE_1627 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_760335.1 1663866 R 228405 CDS YP_760336.1 114799123 4289918 complement(1664278..1664847) 1 NC_008358.1 identified by similarity to GB:AAK24341.1; match to protein family HMM PF01169; hypothetical protein 1664847 4289918 HNE_1628 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760336.1 1664278 R 228405 CDS YP_760337.1 114798105 4289600 1665211..1665930 1 NC_008358.1 putative lipoprotein 1665930 4289600 HNE_1629 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760337.1 1665211 D 228405 CDS YP_760338.1 114800026 4288818 1666036..1666464 1 NC_008358.1 identified by similarity to GB:AAK22457.1; hypothetical protein 1666464 4288818 HNE_1630 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760338.1 1666036 D 228405 CDS YP_760339.1 114798837 4287567 complement(1666472..1668850) 1 NC_008358.1 identified by match to protein family HMM PF00069; protein kinase 1668850 4287567 HNE_1631 Hyphomonas neptunium ATCC 15444 protein kinase YP_760339.1 1666472 R 228405 CDS YP_760340.1 114798276 4287217 complement(1668816..1669400) 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein 1669400 4287217 HNE_1632 Hyphomonas neptunium ATCC 15444 ECF sigma factor family protein YP_760340.1 1668816 R 228405 CDS YP_760341.1 114797413 4287679 1669548..1670111 1 NC_008358.1 hypothetical protein 1670111 4287679 HNE_1633 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760341.1 1669548 D 228405 CDS YP_760342.1 114799284 4289009 1670115..1671776 1 NC_008358.1 hypothetical protein 1671776 4289009 HNE_1634 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760342.1 1670115 D 228405 CDS YP_760343.1 114798976 4288252 1671783..1672937 1 NC_008358.1 hypothetical protein 1672937 4288252 HNE_1635 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760343.1 1671783 D 228405 CDS YP_760344.1 114798139 4287607 1673109..1674425 1 NC_008358.1 identified by match to protein family HMM PF00069; protein kinase 1674425 4287607 HNE_1636 Hyphomonas neptunium ATCC 15444 protein kinase YP_760344.1 1673109 D 228405 CDS YP_760345.1 114798920 4287864 1674477..1675424 1 NC_008358.1 identified by match to protein family HMM PF00112; cysteine protease 1675424 4287864 HNE_1637 Hyphomonas neptunium ATCC 15444 cysteine protease YP_760345.1 1674477 D 228405 CDS YP_760346.1 114798349 4288632 complement(1675467..1675997) 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1675997 4288632 HNE_1638 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_760346.1 1675467 R 228405 CDS YP_760347.1 114797806 4288070 1676180..1676749 1 NC_008358.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02406; L-2,4-diaminobutyric acid acetyltransferase 1676749 ectA 4288070 ectA Hyphomonas neptunium ATCC 15444 L-2,4-diaminobutyric acid acetyltransferase YP_760347.1 1676180 D 228405 CDS YP_760348.1 114799897 4290226 1676795..1678090 1 NC_008358.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1678090 ectB 4290226 ectB Hyphomonas neptunium ATCC 15444 diaminobutyrate--2-oxoglutarate aminotransferase YP_760348.1 1676795 D 228405 CDS YP_760349.1 114799353 4288123 1678102..1678509 1 NC_008358.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 1678509 ectC 4288123 ectC Hyphomonas neptunium ATCC 15444 L-ectoine synthase YP_760349.1 1678102 D 228405 CDS YP_760350.1 114798545 4288110 1678526..1679467 1 NC_008358.1 identified by similarity to GB:AAS02097.1; match to protein family HMM PF05721; match to protein family HMM TIGR02408; ectoine hydroxylase 1679467 4288110 HNE_1642 Hyphomonas neptunium ATCC 15444 ectoine hydroxylase YP_760350.1 1678526 D 228405 CDS YP_760351.1 114800224 4288998 1679469..1680917 1 NC_008358.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1680917 4288998 HNE_1643 Hyphomonas neptunium ATCC 15444 aspartate kinase YP_760351.1 1679469 D 228405 CDS YP_760352.1 114798292 4287233 1680923..1682266 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1682266 4287233 HNE_1644 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_760352.1 1680923 D 228405 CDS YP_760353.1 114797475 4288420 1682263..1683714 1 NC_008358.1 identified by match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein 1683714 4288420 HNE_1645 Hyphomonas neptunium ATCC 15444 solute/sodium symporter (SSS) family protein YP_760353.1 1682263 D 228405 CDS YP_760354.1 114799816 4290124 1684011..1685354 1 NC_008358.1 identified by similarity to SP:P75830; match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1685354 4290124 HNE_1646 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760354.1 1684011 D 228405 CDS YP_760355.1 114800370 4288733 1685368..1687305 1 NC_008358.1 identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687; putative macrolide efflux ABC transporter permease/ATP-binding protein 1687305 4288733 HNE_1647 Hyphomonas neptunium ATCC 15444 putative macrolide efflux ABC transporter permease/ATP-binding protein YP_760355.1 1685368 D 228405 CDS YP_760356.1 114800045 4289368 1687311..1688663 1 NC_008358.1 identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 1688663 4289368 HNE_1648 Hyphomonas neptunium ATCC 15444 RND efflux system outer membrane lipoprotein YP_760356.1 1687311 D 228405 CDS YP_760357.1 114798397 4289738 1688854..1689540 1 NC_008358.1 identified by match to protein family HMM PF03929; hypothetical protein 1689540 4289738 HNE_1649 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760357.1 1688854 D 228405 CDS YP_760358.1 114799383 4288505 1689551..1690066 1 NC_008358.1 identified by similarity to GB:AAM37790.1; hypothetical protein 1690066 4288505 HNE_1650 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760358.1 1689551 D 228405 CDS YP_760359.1 114799602 4289098 1690103..1690918 1 NC_008358.1 identified by similarity to GB:AAM37791.1; hypothetical protein 1690918 4289098 HNE_1651 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760359.1 1690103 D 228405 CDS YP_760360.1 114798499 4287752 1690915..1691889 1 NC_008358.1 identified by match to protein family HMM PF02424; ApbE family protein 1691889 4287752 HNE_1652 Hyphomonas neptunium ATCC 15444 ApbE family protein YP_760360.1 1690915 D 228405 CDS YP_760361.1 114799533 4288926 1692075..1694474 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1694474 4288926 HNE_1653 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760361.1 1692075 D 228405 CDS YP_760362.1 114799766 4288050 1694636..1696297 1 NC_008358.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 1696297 dld 4288050 dld Hyphomonas neptunium ATCC 15444 D-lactate dehydrogenase YP_760362.1 1694636 D 228405 CDS YP_760363.1 114797275 4290539 complement(1696304..1697125) 1 NC_008358.1 identified by similarity to SP:P06957; match to protein family HMM PF07729; putative transcriptional regulator 1697125 4290539 HNE_1655 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator YP_760363.1 1696304 R 228405 CDS YP_760364.1 114799125 4289920 complement(1697350..1698039) 1 NC_008358.1 hypothetical protein 1698039 4289920 HNE_1656 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760364.1 1697350 R 228405 CDS YP_760365.1 114797694 4289344 complement(1698153..1698275) 1 NC_008358.1 identified by match to protein family HMM TIGR02106; cyd operon protein YbgT 1698275 4289344 HNE_1657 Hyphomonas neptunium ATCC 15444 cyd operon protein YbgT YP_760365.1 1698153 R 228405 CDS YP_760366.1 114798433 4290295 complement(1698289..1699431) 1 NC_008358.1 identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 1699431 cydB 4290295 cydB Hyphomonas neptunium ATCC 15444 cytochrome d ubiquinol oxidase subunit II YP_760366.1 1698289 R 228405 CDS YP_760367.1 114799451 4289667 complement(1699444..1701024) 1 NC_008358.1 identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 1701024 cydA 4289667 cydA Hyphomonas neptunium ATCC 15444 cytochrome d ubiquinol oxidase subunit I YP_760367.1 1699444 R 228405 CDS YP_760368.1 114800530 4288875 1701155..1702834 1 NC_008358.1 identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM TIGR02857; amino acid ABC transporter permease/ATP-binding protein CydD 1702834 4288875 HNE_1660 Hyphomonas neptunium ATCC 15444 amino acid ABC transporter permease/ATP-binding protein CydD YP_760368.1 1701155 D 228405 CDS YP_760369.1 114798368 4290425 1702834..1704474 1 NC_008358.1 identified by similarity to SP:P23886; match to protein family HMM PF00005; putative amino acid ABC transporter ATP-binding protein CydC 1704474 4290425 HNE_1661 Hyphomonas neptunium ATCC 15444 putative amino acid ABC transporter ATP-binding protein CydC YP_760369.1 1702834 D 228405 CDS YP_760370.1 114797695 4289345 complement(1704471..1705427) 1 NC_008358.1 hypothetical protein 1705427 4289345 HNE_1662 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760370.1 1704471 R 228405 CDS YP_760371.1 114800196 4288970 1706392..1706979 1 NC_008358.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase 1706979 4288970 HNE_1663 Hyphomonas neptunium ATCC 15444 putative 2-hydroxychromene-2-carboxylate isomerase YP_760371.1 1706392 D 228405 CDS YP_760372.1 114798878 4287569 1707008..1707457 1 NC_008358.1 identified by similarity to GB:CAE26026.1; hypothetical protein 1707457 4287569 HNE_1664 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760372.1 1707008 D 228405 CDS YP_760373.1 114798125 4287593 1707522..1708139 1 NC_008358.1 identified by similarity to GB:AAK23161.1; hypothetical protein 1708139 4287593 HNE_1665 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760373.1 1707522 D 228405 CDS YP_760374.1 114799422 4289326 1708256..1709026 1 NC_008358.1 identified by similarity to GB:AAN68957.1; match to protein family HMM PF03781; hypothetical protein 1709026 4289326 HNE_1666 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760374.1 1708256 D 228405 CDS YP_760375.1 114798452 4287687 complement(1709033..1710559) 1 NC_008358.1 identified by match to protein family HMM PF00884; sulfatase family protein 1710559 4287687 HNE_1667 Hyphomonas neptunium ATCC 15444 sulfatase family protein YP_760375.1 1709033 R 228405 CDS YP_760376.1 114797882 4288672 complement(1710684..1712465) 1 NC_008358.1 identified by match to protein family HMM PF00884; sulfatase family protein 1712465 4288672 HNE_1668 Hyphomonas neptunium ATCC 15444 sulfatase family protein YP_760376.1 1710684 R 228405 CDS YP_760377.1 114800462 4288204 1712611..1713612 1 NC_008358.1 identified by similarity to GB:AAK25606.1; hypothetical protein 1713612 4288204 HNE_1669 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760377.1 1712611 D 228405 CDS YP_760378.1 114799722 4289140 1713609..1715207 1 NC_008358.1 identified by similarity to SP:Q9HHC4; match to protein family HMM PF01068; match to protein family HMM PF04679; putative DNA ligase, ATP-dependent 1715207 4289140 HNE_1670 Hyphomonas neptunium ATCC 15444 putative DNA ligase, ATP-dependent YP_760378.1 1713609 D 228405 CDS YP_760379.1 114799022 4287539 1715301..1717253 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1717253 4287539 HNE_1671 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_760379.1 1715301 D 228405 CDS YP_760380.1 114798166 4287655 complement(1717309..1717689) 1 NC_008358.1 hypothetical protein 1717689 4287655 HNE_1672 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760380.1 1717309 R 228405 CDS YP_760381.1 114797388 4287084 complement(1717774..1718739) 1 NC_008358.1 identified by similarity to GB:AAO77005.1; hypothetical protein 1718739 4287084 HNE_1673 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760381.1 1717774 R 228405 CDS YP_760382.1 114799811 4290119 complement(1718881..1719414) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1719414 4290119 HNE_1674 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760382.1 1718881 R 228405 CDS YP_760383.1 114799029 4287546 complement(1719404..1720306) 1 NC_008358.1 identified by match to protein family HMM PF01112; putative asparaginase 1720306 4287546 HNE_1675 Hyphomonas neptunium ATCC 15444 putative asparaginase YP_760383.1 1719404 R 228405 CDS YP_760384.1 114798244 4288937 complement(1720427..1723147) 1 NC_008358.1 identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422; valyl-tRNA synthetase 1723147 valS 4288937 valS Hyphomonas neptunium ATCC 15444 valyl-tRNA synthetase YP_760384.1 1720427 R 228405 CDS YP_760385.1 114797380 4287311 complement(1723237..1723896) 1 NC_008358.1 identified by similarity to GB:AAK23300.1; hypothetical protein 1723896 4287311 HNE_1677 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760385.1 1723237 R 228405 CDS YP_760386.1 114800241 4287476 complement(1723997..1725277) 1 NC_008358.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein 1725277 4287476 HNE_1678 Hyphomonas neptunium ATCC 15444 TolC family type I secretion outer membrane protein YP_760386.1 1723997 R 228405 CDS YP_760387.1 114799434 4289338 complement(1725372..1726028) 1 NC_008358.1 identified by match to protein family HMM PF01135; putative protein-L-isoaspartate(D-aspartate) O-methyltransferase 1726028 4289338 HNE_1679 Hyphomonas neptunium ATCC 15444 putative protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_760387.1 1725372 R 228405 CDS YP_760388.1 114799521 4288914 1726389..1726565 1 NC_008358.1 hypothetical protein 1726565 4288914 HNE_1681 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760388.1 1726389 D 228405 CDS YP_760389.1 114798376 4288368 complement(1726709..1727281) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1727281 4288368 HNE_1683 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760389.1 1726709 R 228405 CDS YP_760390.1 114800228 4289002 complement(1727505..1728293) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase 1728293 4289002 HNE_1684 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase YP_760390.1 1727505 R 228405 CDS YP_760391.1 114799392 4288514 complement(1728290..1728625) 1 NC_008358.1 identified by similarity to GB:BAB50753.1; hypothetical protein 1728625 4288514 HNE_1685 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760391.1 1728290 R 228405 CDS YP_760392.1 114799063 4288962 1728726..1729097 1 NC_008358.1 identified by match to protein family HMM PF01638; putative transcriptional regulator 1729097 4288962 HNE_1686 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator YP_760392.1 1728726 D 228405 CDS YP_760393.1 114798120 4287588 1729596..1729901 1 NC_008358.1 identified by similarity to GB:AAN82617.1; hypothetical protein 1729901 4287588 HNE_1687 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760393.1 1729596 D 228405 CDS YP_760394.1 114799442 4289658 complement(1730095..1730487) 1 NC_008358.1 identified by similarity to SP:P13111; match to protein family HMM PF00376; mercuric resistance operon regulatory protein 1730487 merR 4289658 merR Hyphomonas neptunium ATCC 15444 mercuric resistance operon regulatory protein YP_760394.1 1730095 R 228405 CDS YP_760395.1 114798313 4289477 1730591..1730965 1 NC_008358.1 identified by similarity to SP:P13112; mercuric transport protein MerT 1730965 merT 4289477 merT Hyphomonas neptunium ATCC 15444 mercuric transport protein MerT YP_760395.1 1730591 D 228405 CDS YP_760396.1 114797310 4287515 1731026..1731301 1 NC_008358.1 identified by match to protein family HMM PF00403; mercuric transport protein, periplasmic component 1731301 merP 4287515 merP Hyphomonas neptunium ATCC 15444 mercuric transport protein, periplasmic component YP_760396.1 1731026 D 228405 CDS YP_760397.1 114799977 4290192 1731485..1732909 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercuric reductase 1732909 merA 4290192 merA Hyphomonas neptunium ATCC 15444 mercuric reductase YP_760397.1 1731485 D 228405 CDS YP_760398.1 114799672 4288694 complement(1733036..1733494) 1 NC_008358.1 identified by similarity to GB:AAO07774.1; hypothetical protein 1733494 4288694 HNE_1692 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760398.1 1733036 R 228405 CDS YP_760399.1 114800435 4288177 complement(1733491..1736700) 1 NC_008358.1 identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1736700 4288177 HNE_1693 Hyphomonas neptunium ATCC 15444 CzcA family heavy metal efflux protein YP_760399.1 1733491 R 228405 CDS YP_760400.1 114797593 4286998 complement(1736697..1738505) 1 NC_008358.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1738505 4286998 HNE_1694 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760400.1 1736697 R 228405 CDS YP_760401.1 114798550 4287394 complement(1738502..1739719) 1 NC_008358.1 identified by match to protein family HMM PF02321; outer membrane efflux protein 1739719 4287394 HNE_1695 Hyphomonas neptunium ATCC 15444 outer membrane efflux protein YP_760401.1 1738502 R 228405 CDS YP_760402.1 114798940 4289639 complement(1739783..1740067) 1 NC_008358.1 identified by similarity to GB:CAB89594.2; hypothetical protein 1740067 4289639 HNE_1696 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760402.1 1739783 R 228405 CDS YP_760403.1 114799808 4289825 1740074..1740217 1 NC_008358.1 hypothetical protein 1740217 4289825 HNE_1697 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760403.1 1740074 D 228405 CDS YP_760404.1 114797482 4289697 1740863..1741699 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; sigma-70 region 2 1741699 4289697 HNE_1698 Hyphomonas neptunium ATCC 15444 sigma-70 region 2 YP_760404.1 1740863 D 228405 CDS YP_760405.1 114798155 4290388 1741696..1742331 1 NC_008358.1 hypothetical protein 1742331 4290388 HNE_1699 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760405.1 1741696 D 228405 CDS YP_760406.1 114798511 4290315 complement(1742747..1745137) 1 NC_008358.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1745137 4290315 HNE_1700 Hyphomonas neptunium ATCC 15444 copper-translocating P-type ATPase YP_760406.1 1742747 R 228405 CDS YP_760407.1 114799255 4289685 complement(1745237..1746091) 1 NC_008358.1 hypothetical protein 1746091 4289685 HNE_1701 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760407.1 1745237 R 228405 CDS YP_760408.1 114799885 4287468 complement(1746176..1746913) 1 NC_008358.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1746913 4287468 HNE_1702 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_760408.1 1746176 R 228405 CDS YP_760409.1 114798710 4290438 complement(1746913..1747392) 1 NC_008358.1 identified by similarity to GB:AAV82071.1; hypothetical protein 1747392 4290438 HNE_1703 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760409.1 1746913 R 228405 CDS YP_760410.1 114798187 4288005 complement(1747403..1748233) 1 NC_008358.1 identified by match to protein family HMM PF05425; copper resistance protein D 1748233 copD 4288005 copD Hyphomonas neptunium ATCC 15444 copper resistance protein D YP_760410.1 1747403 R 228405 CDS YP_760411.1 114797680 4287886 complement(1748245..1748598) 1 NC_008358.1 identified by similarity to SP:Q56797; match to protein family HMM PF04234; copper resistance protein CopC 1748598 copC 4287886 copC Hyphomonas neptunium ATCC 15444 copper resistance protein CopC YP_760411.1 1748245 R 228405 CDS YP_760412.1 114799827 4290135 complement(1748640..1749422) 1 NC_008358.1 identified by match to protein family HMM PF05275; copper resistance protein B 1749422 4290135 HNE_1706 Hyphomonas neptunium ATCC 15444 copper resistance protein B YP_760412.1 1748640 R 228405 CDS YP_760413.1 114799240 4288303 complement(1749437..1751290) 1 NC_008358.1 identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; CopA family copper resistance protein 1751290 4288303 HNE_1707 Hyphomonas neptunium ATCC 15444 CopA family copper resistance protein YP_760413.1 1749437 R 228405 CDS YP_760414.1 114798993 4288425 complement(1751359..1751937) 1 NC_008358.1 identified by similarity to SP:P77214; putative copper resistance protein 1751937 4288425 HNE_1708 Hyphomonas neptunium ATCC 15444 putative copper resistance protein YP_760414.1 1751359 R 228405 CDS YP_760415.1 114799728 4289146 1752531..1752806 1 NC_008358.1 identified by similarity to GB:BAC45966.1; match to protein family HMM PF02583; hypothetical protein 1752806 4289146 HNE_1709 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760415.1 1752531 D 228405 CDS YP_760416.1 114797824 4288477 complement(1752845..1753030) 1 NC_008358.1 identified by similarity to GB:CAE80563.1; hypothetical protein 1753030 4288477 HNE_1710 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760416.1 1752845 R 228405 CDS YP_760417.1 114798627 4289886 1753123..1753317 1 NC_008358.1 hypothetical protein 1753317 4289886 HNE_1711 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760417.1 1753123 D 228405 CDS YP_760418.1 114798289 4287230 complement(1753481..1753588) 1 NC_008358.1 hypothetical protein 1753588 4287230 HNE_1712 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760418.1 1753481 R 228405 CDS YP_760419.1 114799122 4289917 complement(1753588..1755579) 1 NC_008358.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 1755579 cadA 4289917 cadA Hyphomonas neptunium ATCC 15444 cadmium-translocating P-type ATPase YP_760419.1 1753588 R 228405 CDS YP_760420.1 114799378 4288849 complement(1755655..1758768) 1 NC_008358.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 1758768 4288849 HNE_1714 Hyphomonas neptunium ATCC 15444 CzcA family heavy metal efflux protein YP_760420.1 1755655 R 228405 CDS YP_760421.1 114800179 4290023 complement(1758795..1760099) 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1760099 4290023 HNE_1715 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760421.1 1758795 R 228405 CDS YP_760422.1 114798625 4289884 complement(1760096..1761391) 1 NC_008358.1 identified by match to protein family HMM PF02321; efflux transporter, outer membrane factor 1761391 4289884 HNE_1716 Hyphomonas neptunium ATCC 15444 efflux transporter, outer membrane factor YP_760422.1 1760096 R 228405 CDS YP_760423.1 114797850 4287119 complement(1761469..1761993) 1 NC_008358.1 hypothetical protein 1761993 4287119 HNE_1717 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760423.1 1761469 R 228405 CDS YP_760424.1 114799241 4288304 complement(1762406..1762591) 1 NC_008358.1 identified by match to protein family HMM PF05930; prophage CP4-57 regulatory protein AlpA family protein 1762591 4288304 HNE_1718 Hyphomonas neptunium ATCC 15444 prophage CP4-57 regulatory protein AlpA family protein YP_760424.1 1762406 R 228405 CDS YP_760425.1 114797995 4289316 complement(1762696..1763001) 1 NC_008358.1 identified by similarity to PIR:AD3172; match to protein family HMM PF05284; hypothetical protein 1763001 4289316 HNE_1719 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760425.1 1762696 R 228405 CDS YP_760426.1 114797320 4287525 complement(1763238..1764482) 1 NC_008358.1 identified by similarity to PIR:A46449; match to protein family HMM PF03743; type IV secretion system protein TrbI family protein 1764482 4287525 HNE_1720 Hyphomonas neptunium ATCC 15444 type IV secretion system protein TrbI family protein YP_760426.1 1763238 R 228405 CDS YP_760427.1 114799000 4288432 complement(1764487..1765446) 1 NC_008358.1 identified by similarity to PIR:H44020; match to protein family HMM PF03524; match to protein family HMM TIGR02775; type IV secretion system protein TrbG family protein 1765446 4288432 HNE_1721 Hyphomonas neptunium ATCC 15444 type IV secretion system protein TrbG family protein YP_760427.1 1764487 R 228405 CDS YP_760428.1 114799573 4288558 1765486..1766685 1 NC_008358.1 identified by similarity to SP:P49814; malate dehydrogenase domain-containing protein 1766685 4288558 HNE_1722 Hyphomonas neptunium ATCC 15444 malate dehydrogenase domain-containing protein YP_760428.1 1765486 D 228405 CDS YP_760429.1 114800185 4290029 1766682..1767047 1 NC_008358.1 identified by similarity to GB:BAD01773.1; hypothetical protein 1767047 4290029 HNE_1723 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760429.1 1766682 D 228405 CDS YP_760430.1 114799397 4288519 1767050..1767850 1 NC_008358.1 hypothetical protein 1767850 4288519 HNE_1724 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760430.1 1767050 D 228405 CDS YP_760431.1 114797436 4287173 1768669..1769844 1 NC_008358.1 identified by match to protein family HMM PF00271; putative helicase 1769844 4287173 HNE_1725 Hyphomonas neptunium ATCC 15444 putative helicase YP_760431.1 1768669 D 228405 CDS YP_760432.1 114798193 4288011 complement(1769754..1770410) 1 NC_008358.1 identified by similarity to SP:P13111; match to protein family HMM PF00376; MerR family transcriptional regulator 1770410 4288011 HNE_1726 Hyphomonas neptunium ATCC 15444 MerR family transcriptional regulator YP_760432.1 1769754 R 228405 CDS YP_760433.1 114799140 4287794 1770472..1771098 1 NC_008358.1 identified by match to protein family HMM PF01545; cation efflux family protein 1771098 4287794 HNE_1727 Hyphomonas neptunium ATCC 15444 cation efflux family protein YP_760433.1 1770472 D 228405 CDS YP_760434.1 114797959 4289571 1771095..1771559 1 NC_008358.1 identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 1771559 lspA2 4289571 lspA2 Hyphomonas neptunium ATCC 15444 signal peptidase II YP_760434.1 1771095 D 228405 CDS YP_760435.1 114797188 4287059 complement(1771923..1773140) 1 NC_008358.1 identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1773140 4287059 HNE_1729 Hyphomonas neptunium ATCC 15444 phage integrase family site specific recombinase YP_760435.1 1771923 R 228405 CDS YP_760436.1 114799923 4290253 complement(1773446..1773667) 1 NC_008358.1 identified by similarity to SP:Q89UZ9; match to protein family HMM PF03884; hypothetical protein 1773667 4290253 HNE_1731 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760436.1 1773446 R 228405 CDS YP_760437.1 114797667 4288145 complement(1773664..1774734) 1 NC_008358.1 hypothetical protein 1774734 4288145 HNE_1732 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760437.1 1773664 R 228405 CDS YP_760438.1 114798439 4290301 complement(1774739..1776289) 1 NC_008358.1 identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase 1776289 pgi 4290301 pgi Hyphomonas neptunium ATCC 15444 glucose-6-phosphate isomerase YP_760438.1 1774739 R 228405 CDS YP_760439.1 114799205 4289960 1776506..1777696 1 NC_008358.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1777696 tuf1 4289960 tuf1 Hyphomonas neptunium ATCC 15444 elongation factor Tu YP_760439.1 1776506 D 228405 CDS YP_760440.1 114800212 4288986 complement(1777764..1778312) 1 NC_008358.1 identified by similarity to GB:BAC49198.1; match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein 1778312 4288986 HNE_1735 Hyphomonas neptunium ATCC 15444 carboxymuconolactone decarboxylase domain-containing protein YP_760440.1 1777764 R 228405 CDS YP_760441.1 114799867 4287449 1778583..1780199 1 NC_008358.1 identified by match to protein family HMM PF00128; glycosyl hydrolase family protein 1780199 4287449 HNE_1737 Hyphomonas neptunium ATCC 15444 glycosyl hydrolase family protein YP_760441.1 1778583 D 228405 CDS YP_760442.1 114799637 4290277 1780289..1781758 1 NC_008358.1 identified by similarity to SP:P22992; match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871; glucose-6-phosphate 1-dehydrogenase 1781758 zwf 4290277 zwf Hyphomonas neptunium ATCC 15444 glucose-6-phosphate 1-dehydrogenase YP_760442.1 1780289 D 228405 CDS YP_760443.1 114798389 4288381 1781763..1782473 1 NC_008358.1 identified by match to protein family HMM TIGR01198; 6-phosphogluconolactonase 1782473 pgl 4288381 pgl Hyphomonas neptunium ATCC 15444 6-phosphogluconolactonase YP_760443.1 1781763 D 228405 CDS YP_760444.1 114797638 4289032 1782476..1784308 1 NC_008358.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1784308 edd 4289032 edd Hyphomonas neptunium ATCC 15444 phosphogluconate dehydratase YP_760444.1 1782476 D 228405 CDS YP_760445.1 114800054 4289377 1784312..1785280 1 NC_008358.1 identified by similarity to SP:P46880; match to protein family HMM PF02685; glucokinase 1785280 glk 4289377 glk Hyphomonas neptunium ATCC 15444 glucokinase YP_760445.1 1784312 D 228405 CDS YP_760446.1 114798172 4287661 1785466..1785840 1 NC_008358.1 identified by similarity to SP:O84969; match to protein family HMM PF00507; NADH-quinone oxidoreductase subunit A 1785840 nuoA 4287661 nuoA Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit A YP_760446.1 1785466 D 228405 CDS YP_760447.1 114799608 4289104 1785840..1786412 1 NC_008358.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1786412 nuoB 4289104 nuoB Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit B YP_760447.1 1785840 D 228405 CDS YP_760448.1 114799741 4288025 1786424..1787032 1 NC_008358.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1787032 nuoC 4288025 nuoC Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit C YP_760448.1 1786424 D 228405 CDS YP_760449.1 114800277 4287922 1787064..1788242 1 NC_008358.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1788242 nuoD 4287922 nuoD Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit D YP_760449.1 1787064 D 228405 CDS YP_760450.1 114799343 4288113 1788239..1788586 1 NC_008358.1 identified by similarity to GB:AAK23926.1; hypothetical protein 1788586 4288113 HNE_1746 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760450.1 1788239 D 228405 CDS YP_760451.1 114798704 4290432 1788586..1789038 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 1789038 4290432 HNE_1747 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_760451.1 1788586 D 228405 CDS YP_760452.1 114797708 4289358 1789039..1789812 1 NC_008358.1 identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958; NADH-quinone oxidoreductase subunit E 1789812 nuoE 4289358 nuoE Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit E YP_760452.1 1789039 D 228405 CDS YP_760453.1 114799778 4289795 1789816..1791123 1 NC_008358.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1791123 nuoF 4289795 nuoF Hyphomonas neptunium ATCC 15444 NADH dehydrogenase I subunit F YP_760453.1 1789816 D 228405 CDS YP_760454.1 114798795 4287778 1791137..1791535 1 NC_008358.1 hypothetical protein 1791535 4287778 HNE_1750 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760454.1 1791137 D 228405 CDS YP_760455.1 114798223 4288604 1791542..1793641 1 NC_008358.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1793641 nuoG 4288604 nuoG Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit G YP_760455.1 1791542 D 228405 CDS YP_760456.1 114799074 4287728 1793651..1794745 1 NC_008358.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1794745 nuoH 4287728 nuoH Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit H YP_760456.1 1793651 D 228405 CDS YP_760457.1 114798298 4289462 1794742..1795227 1 NC_008358.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1795227 nuoI 4289462 nuoI Hyphomonas neptunium ATCC 15444 NADH dehydrogenase subunit I YP_760457.1 1794742 D 228405 CDS YP_760458.1 114797370 4287301 1795299..1795892 1 NC_008358.1 identified by similarity to SP:P50975; match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit J 1795892 nuoJ 4287301 nuoJ Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit J YP_760458.1 1795299 D 228405 CDS YP_760459.1 114799864 4287446 1795896..1796204 1 NC_008358.1 identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit K 1796204 nuoK 4287446 nuoK Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit K YP_760459.1 1795896 D 228405 CDS YP_760460.1 114798733 4289296 1796212..1798362 1 NC_008358.1 identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase subunit L 1798362 nuoL 4289296 nuoL Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit L YP_760460.1 1796212 D 228405 CDS YP_760461.1 114797733 4288270 1798362..1799864 1 NC_008358.1 identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit M 1799864 nuoM 4288270 nuoM Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit M YP_760461.1 1798362 D 228405 CDS YP_760462.1 114800320 4289254 1799869..1801302 1 NC_008358.1 identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH-quinone oxidoreductase subunit N 1801302 nuoN 4289254 nuoN Hyphomonas neptunium ATCC 15444 NADH-quinone oxidoreductase subunit N YP_760462.1 1799869 D 228405 CDS YP_760463.1 114798329 4287112 1801266..1802033 1 NC_008358.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 1802033 4287112 HNE_1759 Hyphomonas neptunium ATCC 15444 biotin--acetyl-CoA-carboxylase ligase YP_760463.1 1801266 D 228405 CDS YP_760464.1 114799332 4290166 1802037..1802804 1 NC_008358.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1802804 4290166 HNE_1760 Hyphomonas neptunium ATCC 15444 pantothenate kinase YP_760464.1 1802037 D 228405 CDS YP_760465.1 114800376 4288739 1802801..1804498 1 NC_008358.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 1804498 4288739 HNE_1761 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_760465.1 1802801 D 228405 CDS YP_760466.1 114797534 4289495 1804506..1804934 1 NC_008358.1 identified by similarity to SP:Q96PE7; match to protein family HMM PF00903; methylmalonyl-CoA epimerase 1804934 4289495 HNE_1762 Hyphomonas neptunium ATCC 15444 methylmalonyl-CoA epimerase YP_760466.1 1804506 D 228405 CDS YP_760467.1 114800295 4287940 1804934..1805173 1 NC_008358.1 identified by similarity to GB:CAE28374.1; hypothetical protein 1805173 4287940 HNE_1763 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760467.1 1804934 D 228405 CDS YP_760468.1 114799658 4288680 1805221..1806540 1 NC_008358.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1806540 proS 4288680 proS Hyphomonas neptunium ATCC 15444 prolyl-tRNA synthetase YP_760468.1 1805221 D 228405 CDS YP_760469.1 114798078 4287858 1806549..1807820 1 NC_008358.1 identified by match to protein family HMM PF02687; LolC/E family lipoprotein releasing system, transmembrane protein 1807820 4287858 HNE_1765 Hyphomonas neptunium ATCC 15444 LolC/E family lipoprotein releasing system, transmembrane protein YP_760469.1 1806549 D 228405 CDS YP_760470.1 114797117 4287145 1807817..1808503 1 NC_008358.1 identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein-like protein 1808503 4287145 HNE_1766 Hyphomonas neptunium ATCC 15444 lipoprotein releasing system ATP-binding protein-like protein YP_760470.1 1807817 D 228405 CDS YP_760471.1 114800101 4289984 1808583..1812005 1 NC_008358.1 identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1812005 dnaE 4289984 dnaE Hyphomonas neptunium ATCC 15444 DNA polymerase III subunit alpha YP_760471.1 1808583 D 228405 CDS YP_760472.1 114799137 4287791 1812145..1812936 1 NC_008358.1 identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 1812936 rpsB 4287791 rpsB Hyphomonas neptunium ATCC 15444 30S ribosomal protein S2 YP_760472.1 1812145 D 228405 CDS YP_760473.1 114799266 4288581 1812975..1813880 1 NC_008358.1 identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116; translation elongation factor Ts 1813880 tsf 4288581 tsf Hyphomonas neptunium ATCC 15444 translation elongation factor Ts YP_760473.1 1812975 D 228405 CDS YP_760474.1 114798646 4290392 1813991..1814746 1 NC_008358.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase 1814746 pyrH 4290392 pyrH Hyphomonas neptunium ATCC 15444 uridylate kinase YP_760474.1 1813991 D 228405 CDS YP_760475.1 114797846 4288790 1814743..1815297 1 NC_008358.1 identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 1815297 frr 4288790 frr Hyphomonas neptunium ATCC 15444 ribosome recycling factor YP_760475.1 1814743 D 228405 CDS YP_760476.1 114798355 4290412 1815297..1816055 1 NC_008358.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1816055 uppS 4290412 uppS Hyphomonas neptunium ATCC 15444 undecaprenyl diphosphate synthase YP_760476.1 1815297 D 228405 CDS YP_760477.1 114798911 4288497 1816055..1816873 1 NC_008358.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1816873 cdsA 4288497 cdsA Hyphomonas neptunium ATCC 15444 phosphatidate cytidylyltransferase YP_760477.1 1816055 D 228405 CDS YP_760478.1 114799124 4289919 1816880..1818073 1 NC_008358.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1818073 dxr 4289919 dxr Hyphomonas neptunium ATCC 15444 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_760478.1 1816880 D 228405 CDS YP_760479.1 114800133 4290466 1818078..1819241 1 NC_008358.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; M50 family peptidase 1819241 4290466 HNE_1775 Hyphomonas neptunium ATCC 15444 M50 family peptidase YP_760479.1 1818078 D 228405 CDS YP_760480.1 114797815 4288468 1819278..1821842 1 NC_008358.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 1821842 4288468 HNE_1776 Hyphomonas neptunium ATCC 15444 OMP85 family outer membrane protein YP_760480.1 1819278 D 228405 CDS YP_760481.1 114798539 4288104 1821875..1822471 1 NC_008358.1 identified by match to protein family HMM PF03938; OmpH family outer membrane protein 1822471 4288104 HNE_1777 Hyphomonas neptunium ATCC 15444 OmpH family outer membrane protein YP_760481.1 1821875 D 228405 CDS YP_760482.1 114798725 4289288 1822484..1823500 1 NC_008358.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01853; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1823500 lpxD 4289288 lpxD Hyphomonas neptunium ATCC 15444 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_760482.1 1822484 D 228405 CDS YP_760483.1 114799420 4289324 1823540..1824334 1 NC_008358.1 identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1824334 lpxA 4289324 lpxA Hyphomonas neptunium ATCC 15444 acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase YP_760483.1 1823540 D 228405 CDS YP_760484.1 114797181 4287051 1824336..1825184 1 NC_008358.1 identified by match to protein family HMM PF06230; hypothetical protein 1825184 4287051 HNE_1780 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760484.1 1824336 D 228405 CDS YP_760485.1 114800386 4288749 1825181..1826353 1 NC_008358.1 identified by similarity to GB:CAA60866.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid-A-disaccharide synthase 1826353 lpxB 4288749 lpxB Hyphomonas neptunium ATCC 15444 lipid-A-disaccharide synthase YP_760485.1 1825181 D 228405 CDS YP_760486.1 114797964 4288327 complement(1826343..1827647) 1 NC_008358.1 identified by similarity to SP:P51037; match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase I 1827647 gltA 4288327 gltA Hyphomonas neptunium ATCC 15444 citrate synthase I YP_760486.1 1826343 R 228405 CDS YP_760487.1 114798943 4289642 complement(1827695..1829155) 1 NC_008358.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 1829155 gltX1 4289642 gltX1 Hyphomonas neptunium ATCC 15444 glutamyl-tRNA synthetase YP_760487.1 1827695 R 228405 CDS YP_760488.1 114798535 4288100 complement(1829459..1829722) 1 NC_008358.1 hypothetical protein 1829722 4288100 HNE_1784 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760488.1 1829459 R 228405 CDS YP_760489.1 114799405 4289542 1829709..1830485 1 NC_008358.1 hypothetical protein 1830485 4289542 HNE_1785 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760489.1 1829709 D 228405 CDS YP_760490.1 114797550 4287385 complement(1830466..1831149) 1 NC_008358.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1831149 lexA 4287385 lexA Hyphomonas neptunium ATCC 15444 LexA repressor YP_760490.1 1830466 R 228405 CDS YP_760491.1 114800153 4290486 complement(1831216..1832013) 1 NC_008358.1 identified by similarity to SP:P20577; match to protein family HMM PF00218; indole-3-glycerol phosphate synthase 1832013 trpC 4290486 trpC Hyphomonas neptunium ATCC 15444 indole-3-glycerol phosphate synthase YP_760491.1 1831216 R 228405 CDS YP_760492.1 114797113 4287141 complement(1832016..1833041) 1 NC_008358.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase 1833041 trpD 4287141 trpD Hyphomonas neptunium ATCC 15444 anthranilate phosphoribosyltransferase YP_760492.1 1832016 R 228405 CDS YP_760493.1 114798771 4289836 complement(1833038..1833610) 1 NC_008358.1 identified by similarity to GB:BAC65123.1; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II 1833610 trpG 4289836 trpG Hyphomonas neptunium ATCC 15444 anthranilate synthase component II YP_760493.1 1833038 R 228405 CDS YP_760494.1 114799062 4288961 complement(1833607..1835031) 1 NC_008358.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 1835031 trpE 4288961 trpE Hyphomonas neptunium ATCC 15444 anthranilate synthase component I YP_760494.1 1833607 R 228405 CDS YP_760495.1 114799881 4287464 complement(1835028..1836941) 1 NC_008358.1 identified by similarity to SP:P77241; peptidylprolyl cis-trans isomerase-like protein 1836941 4287464 HNE_1791 Hyphomonas neptunium ATCC 15444 peptidylprolyl cis-trans isomerase-like protein YP_760495.1 1835028 R 228405 CDS YP_760496.1 114799671 4288693 1837029..1837778 1 NC_008358.1 identified by similarity to SP:P27876; match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 1837778 tpiA 4288693 tpiA Hyphomonas neptunium ATCC 15444 triosephosphate isomerase YP_760496.1 1837029 D 228405 CDS YP_760497.1 114799731 4289149 1837859..1838314 1 NC_008358.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 1838314 secG 4289149 secG Hyphomonas neptunium ATCC 15444 preprotein translocase subunit SecG YP_760497.1 1837859 D 228405 CDS YP_760498.1 114800487 4289440 1838378..1840012 1 NC_008358.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1840012 pyrG 4289440 pyrG Hyphomonas neptunium ATCC 15444 CTP synthetase YP_760498.1 1838378 D 228405 CDS YP_760499.1 114799922 4290252 complement(1840035..1841264) 1 NC_008358.1 identified by match to protein family HMM PF02353; putative cyclopropane-fatty-acyl-phospholipid synthase 1841264 4290252 HNE_1795 Hyphomonas neptunium ATCC 15444 putative cyclopropane-fatty-acyl-phospholipid synthase YP_760499.1 1840035 R 228405 CDS YP_760500.1 114799149 4287001 complement(1841261..1842070) 1 NC_008358.1 identified by match to protein family HMM PF07103; hypothetical protein 1842070 4287001 HNE_1796 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760500.1 1841261 R 228405 CDS YP_760501.1 114798865 4289721 complement(1842067..1843383) 1 NC_008358.1 identified by similarity to GB:BAB53726.1; match to protein family HMM PF01266; hypothetical protein 1843383 4289721 HNE_1797 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760501.1 1842067 R 228405 CDS YP_760502.1 114797406 4287672 complement(1843380..1844837) 1 NC_008358.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase family protein 1844837 4287672 HNE_1798 Hyphomonas neptunium ATCC 15444 deoxyribodipyrimidine photolyase family protein YP_760502.1 1843380 R 228405 CDS YP_760503.1 114800169 4290013 1844994..1846454 1 NC_008358.1 identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199; rfaE bifunctional protein 1846454 rfaE 4290013 rfaE Hyphomonas neptunium ATCC 15444 rfaE bifunctional protein YP_760503.1 1844994 D 228405 CDS YP_760504.1 114798382 4288374 complement(1846495..1846947) 1 NC_008358.1 identified by match to protein family HMM TIGR02097; hemimethylated DNA binding domain-containing protein 1846947 4288374 HNE_1800 Hyphomonas neptunium ATCC 15444 hemimethylated DNA binding domain-containing protein YP_760504.1 1846495 R 228405 CDS YP_760505.1 114799621 4290261 1847038..1848105 1 NC_008358.1 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 1848105 4290261 HNE_1801 Hyphomonas neptunium ATCC 15444 Ppx/GppA family phosphatase YP_760505.1 1847038 D 228405 CDS YP_760506.1 114798748 4287983 1848098..1848802 1 NC_008358.1 identified by match to protein family HMM PF01728; putative ribosomal RNA large subunit methyltransferase J 1848802 4287983 HNE_1802 Hyphomonas neptunium ATCC 15444 putative ribosomal RNA large subunit methyltransferase J YP_760506.1 1848098 D 228405 CDS YP_760507.1 114797683 4287889 1848827..1849237 1 NC_008358.1 identified by similarity to GB:BAC45879.1; match to protein family HMM PF04828; hypothetical protein 1849237 4287889 HNE_1803 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760507.1 1848827 D 228405 CDS YP_760508.1 114800464 4288206 1849300..1850757 1 NC_008358.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 1850757 guaB 4288206 guaB Hyphomonas neptunium ATCC 15444 inosine-5'-monophosphate dehydrogenase YP_760508.1 1849300 D 228405 CDS YP_760509.1 114799632 4290272 complement(1850759..1851346) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 1851346 4290272 HNE_1805 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760509.1 1850759 R 228405 CDS YP_760510.1 114798023 4287178 1851448..1852755 1 NC_008358.1 identified by match to protein family HMM PF01189; NOL1/NOP2/sun domain-containing protein 1852755 4287178 HNE_1806 Hyphomonas neptunium ATCC 15444 NOL1/NOP2/sun domain-containing protein YP_760510.1 1851448 D 228405 CDS YP_760511.1 114797193 4287064 complement(1852759..1853835) 1 NC_008358.1 identified by match to protein family HMM PF05118; beta-hydroxylase 1853835 4287064 HNE_1807 Hyphomonas neptunium ATCC 15444 beta-hydroxylase YP_760511.1 1852759 R 228405 CDS YP_760512.1 114797176 4287046 1853924..1855504 1 NC_008358.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1855504 guaA 4287046 guaA Hyphomonas neptunium ATCC 15444 GMP synthase YP_760512.1 1853924 D 228405 CDS YP_760513.1 114800128 4290461 1855670..1856755 1 NC_008358.1 identified by match to protein family HMM PF01613; flavin reductase family protein 1856755 4290461 HNE_1809 Hyphomonas neptunium ATCC 15444 flavin reductase family protein YP_760513.1 1855670 D 228405 CDS YP_760514.1 114798446 4290308 complement(1857062..1857865) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1857865 4290308 HNE_1810 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_760514.1 1857062 R 228405 CDS YP_760515.1 114798238 4288931 complement(1857862..1858638) 1 NC_008358.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 1858638 4288931 HNE_1811 Hyphomonas neptunium ATCC 15444 TatD family hydrolase YP_760515.1 1857862 R 228405 CDS YP_760516.1 114798506 4287759 complement(1858649..1859584) 1 NC_008358.1 identified by similarity to GB:AAF06832.1; putative DNA polymerase III, delta prime subunit 1859584 4287759 HNE_1812 Hyphomonas neptunium ATCC 15444 putative DNA polymerase III, delta prime subunit YP_760516.1 1858649 R 228405 CDS YP_760517.1 114799318 4287327 complement(1859581..1860240) 1 NC_008358.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 1860240 tmk 4287327 tmk Hyphomonas neptunium ATCC 15444 thymidylate kinase YP_760517.1 1859581 R 228405 CDS YP_760518.1 114799690 4288712 complement(1860233..1861369) 1 NC_008358.1 identified by similarity to SP:P38422; match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1861369 4288712 HNE_1814 Hyphomonas neptunium ATCC 15444 D-alanyl-D-alanine carboxypeptidase YP_760518.1 1860233 R 228405 CDS YP_760519.1 114797813 4288466 complement(1861505..1862737) 1 NC_008358.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 1862737 rlpA 4288466 rlpA Hyphomonas neptunium ATCC 15444 rare lipoprotein A YP_760519.1 1861505 R 228405 CDS YP_760520.1 114799320 4287329 1863652..1864224 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1864224 4287329 HNE_1817 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_760520.1 1863652 D 228405 CDS YP_760521.1 114797459 4288579 1864443..1865981 1 NC_008358.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR02814; 2-nitropropane dioxygenase 1865981 4288579 HNE_1818 Hyphomonas neptunium ATCC 15444 2-nitropropane dioxygenase YP_760521.1 1864443 D 228405 CDS YP_760522.1 114799051 4288950 1871324..1877404 1 NC_008358.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF07977; putative polyketide synthase 1877404 4288950 HNE_1820 Hyphomonas neptunium ATCC 15444 putative polyketide synthase YP_760522.1 1871324 D 228405 CDS YP_760523.1 114799688 4288710 1878223..1879359 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family protein 1879359 4288710 HNE_1821 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_760523.1 1878223 D 228405 CDS YP_760524.1 114797145 4288362 1879403..1881148 1 NC_008358.1 identified by similarity to GB:AAK23082.1; hypothetical protein 1881148 4288362 HNE_1822 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760524.1 1879403 D 228405 CDS YP_760525.1 114798240 4288933 1881247..1882446 1 NC_008358.1 identified by similarity to GB:AAL18808.1; match to protein family HMM PF02515; E-cinnamoyl-CoA:R-phenyllactate CoA transferase large subunit 1882446 fidA 4288933 fidA Hyphomonas neptunium ATCC 15444 E-cinnamoyl-CoA:R-phenyllactate CoA transferase large subunit YP_760525.1 1881247 D 228405 CDS YP_760526.1 114800390 4288753 complement(1882510..1883307) 1 NC_008358.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1883307 4288753 HNE_1824 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_760526.1 1882510 R 228405 CDS YP_760527.1 114799178 4288395 complement(1883334..1884134) 1 NC_008358.1 identified by similarity to GB:AAV93896.1; hypothetical protein 1884134 4288395 HNE_1825 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760527.1 1883334 R 228405 CDS YP_760528.1 114798417 4288156 complement(1884138..1885028) 1 NC_008358.1 identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692; 3-hydroxyisobutyrate dehydrogenase 1885028 mmsB 4288156 mmsB Hyphomonas neptunium ATCC 15444 3-hydroxyisobutyrate dehydrogenase YP_760528.1 1884138 R 228405 CDS YP_760529.1 114797149 4287608 complement(1885030..1885806) 1 NC_008358.1 identified by similarity to SP:P14604; match to protein family HMM PF00378; enoyl-CoA hydratase 1885806 4287608 HNE_1827 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_760529.1 1885030 R 228405 CDS YP_760530.1 114799926 4290080 complement(1885813..1887309) 1 NC_008358.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase 1887309 mmsA1 4290080 mmsA1 Hyphomonas neptunium ATCC 15444 methylmalonate-semialdehyde dehydrogenase YP_760530.1 1885813 R 228405 CDS YP_760531.1 114800488 4289441 1887693..1888877 1 NC_008358.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein 1888877 4289441 HNE_1830 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760531.1 1887693 D 228405 CDS YP_760532.1 114798101 4289596 1888945..1890684 1 NC_008358.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1890684 metG 4289596 metG Hyphomonas neptunium ATCC 15444 methionyl-tRNA synthetase YP_760532.1 1888945 D 228405 CDS YP_760533.1 114797573 4287291 1890689..1891171 1 NC_008358.1 identified by similarity to PIR:G97490; match to protein family HMM PF04828; hypothetical protein 1891171 4287291 HNE_1832 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760533.1 1890689 D 228405 CDS YP_760534.1 114800107 4289990 complement(1891168..1891824) 1 NC_008358.1 identified by similarity to GB:BAC91814.1; match to protein family HMM PF06080; hypothetical protein 1891824 4289990 HNE_1833 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760534.1 1891168 R 228405 CDS YP_760535.1 114798510 4290314 complement(1891814..1892827) 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1892827 4290314 HNE_1834 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_760535.1 1891814 R 228405 CDS YP_760536.1 114797684 4287890 complement(1892838..1894589) 1 NC_008358.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase 1894589 fcs3 4287890 fcs3 Hyphomonas neptunium ATCC 15444 feruloyl-CoA synthetase YP_760536.1 1892838 R 228405 CDS YP_760537.1 114797068 4287036 complement(1894768..1895349) 1 NC_008358.1 hypothetical protein 1895349 4287036 HNE_1836 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760537.1 1894768 R 228405 CDS YP_760538.1 114799586 4289082 complement(1895384..1896025) 1 NC_008358.1 putative lipoprotein 1896025 4289082 HNE_1837 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760538.1 1895384 R 228405 CDS YP_760539.1 114798103 4289598 complement(1896131..1898053) 1 NC_008358.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1898053 dxs 4289598 dxs Hyphomonas neptunium ATCC 15444 1-deoxy-D-xylulose-5-phosphate synthase YP_760539.1 1896131 R 228405 CDS YP_760540.1 114797210 4289927 complement(1898089..1898976) 1 NC_008358.1 identified by similarity to SP:P22939; match to protein family HMM PF00348; geranyltranstransferase 1898976 ispA 4289927 ispA Hyphomonas neptunium ATCC 15444 geranyltranstransferase YP_760540.1 1898089 R 228405 CDS YP_760541.1 114800150 4290483 complement(1899008..1899253) 1 NC_008358.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit 1899253 xseB 4290483 xseB Hyphomonas neptunium ATCC 15444 exodeoxyribonuclease VII small subunit YP_760541.1 1899008 R 228405 CDS YP_760542.1 114800175 4290019 complement(1899325..1899927) 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1899927 4290019 HNE_1841 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_760542.1 1899325 R 228405 CDS YP_760543.1 114798259 4287239 complement(1900020..1900796) 1 NC_008358.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1900796 lepB 4287239 lepB Hyphomonas neptunium ATCC 15444 signal peptidase I YP_760543.1 1900020 R 228405 CDS YP_760544.1 114799081 4287735 complement(1900977..1902041) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1902041 4287735 HNE_1843 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_760544.1 1900977 R 228405 CDS YP_760545.1 114799825 4290133 complement(1902097..1903215) 1 NC_008358.1 identified by similarity to SP:P32684; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase F 1903215 4290133 HNE_1844 Hyphomonas neptunium ATCC 15444 ribosomal large subunit pseudouridine synthase F YP_760545.1 1902097 R 228405 CDS YP_760546.1 114797077 4287358 complement(1903285..1905054) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 1905054 4287358 HNE_1845 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_760546.1 1903285 R 228405 CDS YP_760547.1 114798699 4289769 1905176..1905916 1 NC_008358.1 identified by match to protein family HMM PF04264; hypothetical protein 1905916 4289769 HNE_1846 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760547.1 1905176 D 228405 CDS YP_760548.1 114799485 4289176 1905923..1907131 1 NC_008358.1 identified by match to protein family HMM PF01292; match to protein family HMM PF04264; nickel-dependent hydrogenase, b-type cytochrome subunit/YceI-like family protein 1907131 4289176 HNE_1847 Hyphomonas neptunium ATCC 15444 nickel-dependent hydrogenase, b-type cytochrome subunit/YceI-like family protein YP_760548.1 1905923 D 228405 CDS YP_760549.1 114798799 4287782 1907192..1908133 1 NC_008358.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1908133 4287782 HNE_1848 Hyphomonas neptunium ATCC 15444 Sua5/YciO/YrdC/YwlC family protein YP_760549.1 1907192 D 228405 CDS YP_760550.1 114799391 4288513 complement(1908144..1908356) 1 NC_008358.1 identified by similarity to GB:CAC46063.1; hypothetical protein 1908356 4288513 HNE_1849 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760550.1 1908144 R 228405 CDS YP_760551.1 114797254 4288452 complement(1908449..1909258) 1 NC_008358.1 identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172; serine O-acetyltransferase 1909258 cysE 4288452 cysE Hyphomonas neptunium ATCC 15444 serine O-acetyltransferase YP_760551.1 1908449 R 228405 CDS YP_760552.1 114800359 4288722 complement(1909331..1912459) 1 NC_008358.1 identified by match to protein family HMM PF00873; RND efflux transporter 1912459 4288722 HNE_1851 Hyphomonas neptunium ATCC 15444 RND efflux transporter YP_760552.1 1909331 R 228405 CDS YP_760553.1 114799352 4288122 complement(1912478..1913707) 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1913707 4288122 HNE_1852 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760553.1 1912478 R 228405 CDS YP_760554.1 114797418 4287684 complement(1913662..1914363) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1914363 4287684 HNE_1853 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760554.1 1913662 R 228405 CDS YP_760555.1 114799931 4290085 1914504..1915142 1 NC_008358.1 identified by match to protein family HMM PF00881; nitroreductase family protein 1915142 4290085 HNE_1854 Hyphomonas neptunium ATCC 15444 nitroreductase family protein YP_760555.1 1914504 D 228405 CDS YP_760556.1 114798966 4287423 complement(1915189..1915656) 1 NC_008358.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1915656 folE1 4287423 folE1 Hyphomonas neptunium ATCC 15444 7-cyano-7-deazaguanine reductase YP_760556.1 1915189 R 228405 CDS YP_760557.1 114798621 4289880 complement(1915649..1916668) 1 NC_008358.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; K+-dependent Na+/Ca+ exchanger-like protein 1916668 4289880 HNE_1856 Hyphomonas neptunium ATCC 15444 K+-dependent Na+/Ca+ exchanger-like protein YP_760557.1 1915649 R 228405 CDS YP_760558.1 114798975 4288251 1916843..1918663 1 NC_008358.1 identified by match to protein family HMM PF01103; OMP85 family outer membrane protein 1918663 4288251 HNE_1857 Hyphomonas neptunium ATCC 15444 OMP85 family outer membrane protein YP_760558.1 1916843 D 228405 CDS YP_760559.1 114798184 4288002 1918663..1922778 1 NC_008358.1 identified by similarity to GB:AAK23583.1; match to protein family HMM PF04357; hypothetical protein 1922778 4288002 HNE_1858 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760559.1 1918663 D 228405 CDS YP_760560.1 114797386 4287082 1922957..1923340 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 1923340 4287082 HNE_1859 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_760560.1 1922957 D 228405 CDS YP_760561.1 114798008 4290064 complement(1923414..1924235) 1 NC_008358.1 identified by match to protein family HMM PF00188; SCP-like extracellular family protein 1924235 4290064 HNE_1860 Hyphomonas neptunium ATCC 15444 SCP-like extracellular family protein YP_760561.1 1923414 R 228405 CDS YP_760562.1 114799222 4289591 1924314..1925210 1 NC_008358.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1925210 4289591 HNE_1861 Hyphomonas neptunium ATCC 15444 2OG-Fe(II) oxygenase YP_760562.1 1924314 D 228405 CDS YP_760563.1 114799982 4290197 1925397..1926944 1 NC_008358.1 identified by similarity to GB:AAM35581.1; putative lipoprotein 1926944 4290197 HNE_1862 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760563.1 1925397 D 228405 CDS YP_760564.1 114799622 4290262 1927024..1929675 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1929675 4290262 HNE_1863 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760564.1 1927024 D 228405 CDS YP_760565.1 114800404 4290348 1929913..1930788 1 NC_008358.1 general secretion pathway protein C 1930788 gspC 4290348 gspC Hyphomonas neptunium ATCC 15444 general secretion pathway protein C YP_760565.1 1929913 D 228405 CDS YP_760566.1 114797223 4289940 1930785..1932746 1 NC_008358.1 identified by similarity to GB:AAD05173.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517; general secretion pathway protein D 1932746 gspD 4289940 gspD Hyphomonas neptunium ATCC 15444 general secretion pathway protein D YP_760566.1 1930785 D 228405 CDS YP_760567.1 114798020 4290076 1932754..1934244 1 NC_008358.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533; general secretory pathway protein E 1934244 gspE 4290076 gspE Hyphomonas neptunium ATCC 15444 general secretory pathway protein E YP_760567.1 1932754 D 228405 CDS YP_760568.1 114798264 4287244 1934231..1935442 1 NC_008358.1 identified by similarity to GB:AAD05175.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120; general secretion pathway protein F 1935442 gspF 4287244 gspF Hyphomonas neptunium ATCC 15444 general secretion pathway protein F YP_760568.1 1934231 D 228405 CDS YP_760569.1 114799042 4290520 1935455..1935913 1 NC_008358.1 identified by similarity to GB:AAD05177.1; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 1935913 gspG1 4290520 gspG1 Hyphomonas neptunium ATCC 15444 general secretion pathway protein G YP_760569.1 1935455 D 228405 CDS YP_760570.1 114797639 4289033 1935922..1936428 1 NC_008358.1 identified by similarity to GB:AAD05178.1; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532; general secretion pathway protein H 1936428 gspH 4289033 gspH Hyphomonas neptunium ATCC 15444 general secretion pathway protein H YP_760570.1 1935922 D 228405 CDS YP_760571.1 114797577 4286982 1936428..1936802 1 NC_008358.1 identified by similarity to SP:Q00516; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532; general secretion pathway protein I 1936802 gspI 4286982 gspI Hyphomonas neptunium ATCC 15444 general secretion pathway protein I YP_760571.1 1936428 D 228405 CDS YP_760572.1 114799191 4289946 1936799..1937419 1 NC_008358.1 identified by similarity to SP:Q00517; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532; general secretion pathway protein J 1937419 gspJ 4289946 gspJ Hyphomonas neptunium ATCC 15444 general secretion pathway protein J YP_760572.1 1936799 D 228405 CDS YP_760573.1 114798322 4287105 1937416..1938387 1 NC_008358.1 identified by similarity to SP:P31706; match to protein family HMM PF03934; general secretion pathway protein K 1938387 gspK 4287105 gspK Hyphomonas neptunium ATCC 15444 general secretion pathway protein K YP_760573.1 1937416 D 228405 CDS YP_760574.1 114800477 4289430 1938387..1939490 1 NC_008358.1 identified by similarity to SP:P45789; match to protein family HMM PF05134; match to protein family HMM TIGR01709; general secretion pathway protein L 1939490 gspL 4289430 gspL Hyphomonas neptunium ATCC 15444 general secretion pathway protein L YP_760574.1 1938387 D 228405 CDS YP_760575.1 114799513 4288906 1939487..1939978 1 NC_008358.1 identified by similarity to GB:AAD05183.1; general secretion pathway protein M 1939978 gspM 4288906 gspM Hyphomonas neptunium ATCC 15444 general secretion pathway protein M YP_760575.1 1939487 D 228405 CDS YP_760576.1 114798558 4287402 1939978..1940733 1 NC_008358.1 identified by match to protein family HMM PF01203; general secretion pathway protein N 1940733 gspN 4287402 gspN Hyphomonas neptunium ATCC 15444 general secretion pathway protein N YP_760576.1 1939978 D 228405 CDS YP_760577.1 114797558 4287276 1940730..1941218 1 NC_008358.1 identified by similarity to SP:P11910; hypothetical protein 1941218 4287276 HNE_1876 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760577.1 1940730 D 228405 CDS YP_760578.1 114800058 4289381 complement(1941247..1941594) 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 1941594 4289381 HNE_1877 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_760578.1 1941247 R 228405 CDS YP_760579.1 114798834 4287564 complement(1941686..1943062) 1 NC_008358.1 identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase 1943062 sdaA 4287564 sdaA Hyphomonas neptunium ATCC 15444 L-serine ammonia-lyase YP_760579.1 1941686 R 228405 CDS YP_760580.1 114799387 4288509 complement(1943135..1944322) 1 NC_008358.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; monooxygenase 1944322 4288509 HNE_1879 Hyphomonas neptunium ATCC 15444 monooxygenase YP_760580.1 1943135 R 228405 CDS YP_760581.1 114800346 4289280 complement(1944356..1944559) 1 NC_008358.1 identified by similarity to GB:AAK22176.1; hypothetical protein 1944559 4289280 HNE_1880 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760581.1 1944356 R 228405 CDS YP_760582.1 114797217 4289934 1944678..1945619 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1945619 4289934 HNE_1881 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_760582.1 1944678 D 228405 CDS YP_760583.1 114798336 4288619 complement(1945641..1945961) 1 NC_008358.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1945961 trx 4288619 trx Hyphomonas neptunium ATCC 15444 thioredoxin YP_760583.1 1945641 R 228405 CDS YP_760584.1 114799862 4287444 complement(1946026..1949532) 1 NC_008358.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02784; double-strand break repair helicase AddA 1949532 addA 4287444 addA Hyphomonas neptunium ATCC 15444 double-strand break repair helicase AddA YP_760584.1 1946026 R 228405 CDS YP_760585.1 114800509 4288854 complement(1949525..1952578) 1 NC_008358.1 hypothetical protein 1952578 4288854 HNE_1884 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760585.1 1949525 R 228405 CDS YP_760586.1 114797511 4287641 complement(1952568..1953293) 1 NC_008358.1 identified by match to protein family HMM PF00483; nucleotidyl transferase family protein 1953293 4287641 HNE_1885 Hyphomonas neptunium ATCC 15444 nucleotidyl transferase family protein YP_760586.1 1952568 R 228405 CDS YP_760587.1 114798471 4288754 complement(1953290..1954390) 1 NC_008358.1 identified by similarity to GB:AAK25497.1; match to protein family HMM PF01636; hypothetical protein 1954390 4288754 HNE_1886 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760587.1 1953290 R 228405 CDS YP_760588.1 114798401 4289742 complement(1954374..1954829) 1 NC_008358.1 identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1954829 4289742 HNE_1887 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760588.1 1954374 R 228405 CDS YP_760589.1 114799596 4289092 1954986..1956230 1 NC_008358.1 identified by similarity to GB:CAC37905.1; match to protein family HMM PF00070; match to protein family HMM PF01262; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1956230 4289092 HNE_1888 Hyphomonas neptunium ATCC 15444 pyridine nucleotide-disulfide oxidoreductase YP_760589.1 1954986 D 228405 CDS YP_760590.1 114800377 4288740 1956248..1956568 1 NC_008358.1 identified by similarity to SP:P37098; match to protein family HMM PF00111; ferredoxin, 2Fe-2S 1956568 fdxB 4288740 fdxB Hyphomonas neptunium ATCC 15444 ferredoxin, 2Fe-2S YP_760590.1 1956248 D 228405 CDS YP_760591.1 114798894 4287585 1956703..1957488 1 NC_008358.1 hypothetical protein 1957488 4287585 HNE_1890 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760591.1 1956703 D 228405 CDS YP_760592.1 114798087 4288235 complement(1957560..1957967) 1 NC_008358.1 identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 1957967 atpC 4288235 atpC Hyphomonas neptunium ATCC 15444 ATP synthase F1 subunit epsilon YP_760592.1 1957560 R 228405 CDS YP_760593.1 114800518 4288863 complement(1957979..1959406) 1 NC_008358.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1959406 atpD 4288863 atpD Hyphomonas neptunium ATCC 15444 F0F1 ATP synthase subunit beta YP_760593.1 1957979 R 228405 CDS YP_760594.1 114800497 4289450 complement(1959453..1960331) 1 NC_008358.1 identified by similarity to SP:P05436; match to protein family HMM PF00231; match to protein family HMM TIGR01146; ATP synthase F1 subunit gamma 1960331 atpG 4289450 atpG Hyphomonas neptunium ATCC 15444 ATP synthase F1 subunit gamma YP_760594.1 1959453 R 228405 CDS YP_760595.1 114799519 4288912 complement(1960367..1961902) 1 NC_008358.1 identified by similarity to SP:P05439; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1 subunit alpha 1961902 atpA 4288912 atpA Hyphomonas neptunium ATCC 15444 ATP synthase F1 subunit alpha YP_760595.1 1960367 R 228405 CDS YP_760596.1 114798041 4287196 complement(1961911..1962456) 1 NC_008358.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 1962456 atpH 4287196 atpH Hyphomonas neptunium ATCC 15444 ATP synthase F1 subunit delta YP_760596.1 1961911 R 228405 CDS YP_760597.1 114797126 4287154 complement(1962664..1964862) 1 NC_008358.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1964862 priA 4287154 priA Hyphomonas neptunium ATCC 15444 primosome assembly protein PriA YP_760597.1 1962664 R 228405 CDS YP_760598.1 114800225 4288999 complement(1964922..1965500) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1965500 4288999 HNE_1897 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760598.1 1964922 R 228405 CDS YP_760599.1 114799649 4290289 1965589..1966008 1 NC_008358.1 identified by match to protein family HMM PF03061; thioesterase family protein 1966008 4290289 HNE_1898 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_760599.1 1965589 D 228405 CDS YP_760600.1 114798057 4289532 1966085..1967077 1 NC_008358.1 identified by match to protein family HMM PF07728; AAA ATPase 1967077 4289532 HNE_1899 Hyphomonas neptunium ATCC 15444 AAA ATPase YP_760600.1 1966085 D 228405 CDS YP_760601.1 114798981 4288257 1967090..1968451 1 NC_008358.1 identified by match to protein family HMM PF05762; VWA domain-containing protein 1968451 4288257 HNE_1900 Hyphomonas neptunium ATCC 15444 VWA domain-containing protein YP_760601.1 1967090 D 228405 CDS YP_760602.1 114798609 4289868 complement(1968462..1969544) 1 NC_008358.1 identified by similarity to SP:Q45971; match to protein family HMM PF01555; modification methylase CcrM 1969544 ccrM 4289868 ccrM Hyphomonas neptunium ATCC 15444 modification methylase CcrM YP_760602.1 1968462 R 228405 CDS YP_760603.1 114797816 4288469 1969737..1971368 1 NC_008358.1 identified by match to protein family HMM PF02690; Na/Pi cotransporter family protein 1971368 4288469 HNE_1902 Hyphomonas neptunium ATCC 15444 Na/Pi cotransporter family protein YP_760603.1 1969737 D 228405 CDS YP_760604.1 114798617 4289876 complement(1971365..1972438) 1 NC_008358.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1972438 4289876 HNE_1903 Hyphomonas neptunium ATCC 15444 radical SAM domain-containing protein YP_760604.1 1971365 R 228405 CDS YP_760605.1 114797555 4287390 complement(1972547..1973164) 1 NC_008358.1 identified by similarity to GB:CAE11027.1; hypothetical protein 1973164 4287390 HNE_1904 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760605.1 1972547 R 228405 CDS YP_760606.1 114800292 4287937 1973272..1973769 1 NC_008358.1 hypothetical protein 1973769 4287937 HNE_1905 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760606.1 1973272 D 228405 CDS YP_760607.1 114799335 4290169 complement(1973766..1974449) 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1974449 4290169 HNE_1906 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_760607.1 1973766 R 228405 CDS YP_760608.1 114799154 4287006 1974535..1975011 1 NC_008358.1 identified by similarity to GB:AAO56273.1; match to protein family HMM PF01814; hypothetical protein 1975011 4287006 HNE_1907 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760608.1 1974535 D 228405 CDS YP_760609.1 114798144 4290377 complement(1975012..1975752) 1 NC_008358.1 identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 1975752 4290377 HNE_1908 Hyphomonas neptunium ATCC 15444 uracil-DNA glycosylase YP_760609.1 1975012 R 228405 CDS YP_760610.1 114797800 4288064 1975898..1977577 1 NC_008358.1 identified by similarity to SP:Q16134; match to protein family HMM PF01266; match to protein family HMM PF05187; putative electron transfer flavoprotein-ubiquinone oxidoreductase 1977577 4288064 HNE_1909 Hyphomonas neptunium ATCC 15444 putative electron transfer flavoprotein-ubiquinone oxidoreductase YP_760610.1 1975898 D 228405 CDS YP_760611.1 114799202 4289957 1977715..1979649 1 NC_008358.1 identified by similarity to GB:AAQ61721.1; match to protein family HMM PF07721; putative lipoprotein 1979649 4289957 HNE_1910 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760611.1 1977715 D 228405 CDS YP_760612.1 114797913 4287263 1979762..1982368 1 NC_008358.1 identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1982368 mrcA 4287263 mrcA Hyphomonas neptunium ATCC 15444 penicillin-binding protein 1A YP_760612.1 1979762 D 228405 CDS YP_760613.1 114798643 4289902 join(1982462..1982530,1982532..1983569) 1 NC_008358.1 identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift 1983569 prfB 4289902 prfB Hyphomonas neptunium ATCC 15444 peptide chain release factor 2, programmed frameshift YP_760613.1 1982462 D 228405 CDS YP_760614.1 114798604 4290507 1983566..1984210 1 NC_008358.1 identified by match to protein family HMM PF00313; match to protein family HMM PF06961; cold shock DNA-binding membrane protein 1984210 4290507 HNE_1913 Hyphomonas neptunium ATCC 15444 cold shock DNA-binding membrane protein YP_760614.1 1983566 D 228405 CDS YP_760615.1 114799676 4288698 complement(1984197..1985240) 1 NC_008358.1 identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase 1985240 mutY 4288698 mutY Hyphomonas neptunium ATCC 15444 A/G-specific adenine glycosylase YP_760615.1 1984197 R 228405 CDS YP_760616.1 114799887 4290216 1985286..1985822 1 NC_008358.1 hypothetical protein 1985822 4290216 HNE_1915 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760616.1 1985286 D 228405 CDS YP_760617.1 114798923 4287867 1985893..1986564 1 NC_008358.1 identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 1986564 4287867 HNE_1916 Hyphomonas neptunium ATCC 15444 DSBA-like thioredoxin domain-containing protein YP_760617.1 1985893 D 228405 CDS YP_760618.1 114799181 4288398 1986580..1990041 1 NC_008358.1 identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1990041 smc 4288398 smc Hyphomonas neptunium ATCC 15444 chromosome segregation protein SMC YP_760618.1 1986580 D 228405 CDS YP_760619.1 114798123 4287591 1990191..1990553 1 NC_008358.1 identified by similarity to SP:P15011; putative ATP synthase subunit I 1990553 4287591 HNE_1918 Hyphomonas neptunium ATCC 15444 putative ATP synthase subunit I YP_760619.1 1990191 D 228405 CDS YP_760620.1 114797617 4288639 1990559..1991320 1 NC_008358.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1991320 atpB 4288639 atpB Hyphomonas neptunium ATCC 15444 F0F1 ATP synthase subunit A YP_760620.1 1990559 D 228405 CDS YP_760621.1 114798825 4287555 1991437..1991673 1 NC_008358.1 identified by match to protein family HMM PF00137; ATP synthase F0 subunit C 1991673 atpE 4287555 atpE Hyphomonas neptunium ATCC 15444 ATP synthase F0 subunit C YP_760621.1 1991437 D 228405 CDS YP_760622.1 114798353 4288636 1991719..1992258 1 NC_008358.1 identified by match to protein family HMM PF00430; ATP synthase F0 subunit B family protein 1992258 4288636 HNE_1921 Hyphomonas neptunium ATCC 15444 ATP synthase F0 subunit B family protein YP_760622.1 1991719 D 228405 CDS YP_760623.1 114798056 4289531 1992258..1992827 1 NC_008358.1 identified by match to protein family HMM PF00430; ATP synthase F0 subunit B family protein 1992827 4289531 HNE_1922 Hyphomonas neptunium ATCC 15444 ATP synthase F0 subunit B family protein YP_760623.1 1992258 D 228405 CDS YP_760624.1 114797116 4287144 complement(1992958..1993872) 1 NC_008358.1 hypothetical protein 1993872 4287144 HNE_1923 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760624.1 1992958 R 228405 CDS YP_760625.1 114799588 4289084 1994021..1995118 1 NC_008358.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1995118 4289084 HNE_1924 Hyphomonas neptunium ATCC 15444 GTP-dependent nucleic acid-binding protein EngD YP_760625.1 1994021 D 228405 CDS YP_760626.1 114798600 4290503 complement(1995200..1996189) 1 NC_008358.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; protein-export membrane protein SecF 1996189 secF 4290503 secF Hyphomonas neptunium ATCC 15444 protein-export membrane protein SecF YP_760626.1 1995200 R 228405 CDS YP_760627.1 114798563 4287407 complement(1996208..1997815) 1 NC_008358.1 identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD 1997815 secD1 4287407 secD1 Hyphomonas neptunium ATCC 15444 protein-export membrane protein SecD YP_760627.1 1996208 R 228405 CDS YP_760628.1 114797763 4288221 complement(1997852..1998226) 1 NC_008358.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 1998226 yajC 4288221 yajC Hyphomonas neptunium ATCC 15444 preprotein translocase subunit YajC YP_760628.1 1997852 R 228405 CDS YP_760629.1 114800134 4290467 complement(1998332..1998991) 1 NC_008358.1 identified by similarity to SP:P24206; match to protein family HMM PF01135; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1998991 pcm 4290467 pcm Hyphomonas neptunium ATCC 15444 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_760629.1 1998332 R 228405 CDS YP_760630.1 114799382 4288504 complement(1998979..1999740) 1 NC_008358.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1999740 surE 4288504 surE Hyphomonas neptunium ATCC 15444 stationary phase survival protein SurE YP_760630.1 1998979 R 228405 CDS YP_760631.1 114800440 4288182 complement(1999780..2001078) 1 NC_008358.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase 2001078 serS 4288182 serS Hyphomonas neptunium ATCC 15444 seryl-tRNA synthetase YP_760631.1 1999780 R 228405 CDS YP_760632.1 114797679 4287885 2001470..2001580 1 NC_008358.1 hypothetical protein 2001580 4287885 HNE_1931 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760632.1 2001470 D 228405 CDS YP_760633.1 114798916 4288502 complement(2002420..2003247) 1 NC_008358.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 2003247 tatC 4288502 tatC Hyphomonas neptunium ATCC 15444 Sec-independent protein translocase TatC YP_760633.1 2002420 R 228405 CDS YP_760634.1 114799670 4288692 complement(2003244..2003666) 1 NC_008358.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation protein TatA 2003666 tatA1 4288692 tatA1 Hyphomonas neptunium ATCC 15444 twin-arginine translocation protein TatA YP_760634.1 2003244 R 228405 CDS YP_760635.1 114797323 4287528 complement(2003692..2003904) 1 NC_008358.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 2003904 tatA2 4287528 tatA2 Hyphomonas neptunium ATCC 15444 twin arginine-targeting protein translocase YP_760635.1 2003692 R 228405 CDS YP_760636.1 114798068 4287848 2003988..2004764 1 NC_008358.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 2004764 xth 4287848 xth Hyphomonas neptunium ATCC 15444 exodeoxyribonuclease III YP_760636.1 2003988 D 228405 CDS YP_760637.1 114799389 4288511 2004790..2005131 1 NC_008358.1 identified by match to protein family HMM PF04342; hypothetical protein 2005131 4288511 HNE_1936 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760637.1 2004790 D 228405 CDS YP_760638.1 114800222 4288996 2005489..2006157 1 NC_008358.1 identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737; phosphoribosylformylglycinamidine synthase I 2006157 purQ 4288996 purQ Hyphomonas neptunium ATCC 15444 phosphoribosylformylglycinamidine synthase I YP_760638.1 2005489 D 228405 CDS YP_760639.1 114797828 4288481 2006154..2007167 1 NC_008358.1 identified by match to protein family HMM PF00962; match to protein family HMM TIGR01430; adenosine deaminase 2007167 add 4288481 add Hyphomonas neptunium ATCC 15444 adenosine deaminase YP_760639.1 2006154 D 228405 CDS YP_760640.1 114798576 4289506 complement(2007195..2007866) 1 NC_008358.1 hypothetical protein 2007866 4289506 HNE_1939 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760640.1 2007195 R 228405 CDS YP_760641.1 114797607 4288319 complement(2007981..2009114) 1 NC_008358.1 identified by match to protein family HMM PF01266; FAD-binding oxidoreductase 2009114 4288319 HNE_1940 Hyphomonas neptunium ATCC 15444 FAD-binding oxidoreductase YP_760641.1 2007981 R 228405 CDS YP_760642.1 114798369 4290426 2009156..2010769 1 NC_008358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721; TPR/sulfotransferase domain-containing protein 2010769 4290426 HNE_1941 Hyphomonas neptunium ATCC 15444 TPR/sulfotransferase domain-containing protein YP_760642.1 2009156 D 228405 CDS YP_760643.1 114797329 4289407 2010803..2013064 1 NC_008358.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736; phosphoribosylformylglycinamidine synthase II 2013064 purL 4289407 purL Hyphomonas neptunium ATCC 15444 phosphoribosylformylglycinamidine synthase II YP_760643.1 2010803 D 228405 CDS YP_760644.1 114797966 4288329 complement(2013144..2013749) 1 NC_008358.1 identified by match to protein family HMM PF01389; OmpA family protein 2013749 4288329 HNE_1943 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_760644.1 2013144 R 228405 CDS YP_760645.1 114799685 4288707 complement(2014008..2014520) 1 NC_008358.1 hypothetical protein 2014520 4288707 HNE_1944 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760645.1 2014008 R 228405 CDS YP_760646.1 114800468 4289421 complement(2014517..2015533) 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M20/M25/M40 family peptidase 2015533 4289421 HNE_1945 Hyphomonas neptunium ATCC 15444 M20/M25/M40 family peptidase YP_760646.1 2014517 R 228405 CDS YP_760647.1 114799421 4289325 2015648..2015881 1 NC_008358.1 identified by match to protein family HMM PF01722; BolA/YrbA family protein 2015881 4289325 HNE_1946 Hyphomonas neptunium ATCC 15444 BolA/YrbA family protein YP_760647.1 2015648 D 228405 CDS YP_760648.1 114799176 4288393 2015958..2017805 1 NC_008358.1 identified by match to protein family HMM PF01401; angiotensin-converting enzyme family protein 2017805 4288393 HNE_1947 Hyphomonas neptunium ATCC 15444 angiotensin-converting enzyme family protein YP_760648.1 2015958 D 228405 CDS YP_760649.1 114798327 4287110 complement(2017969..2018895) 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne4, transposase 2018895 4287110 HNE_1948 Hyphomonas neptunium ATCC 15444 ISHne4, transposase YP_760649.1 2017969 R 228405 CDS YP_760650.1 114799856 4287438 2019757..2020092 1 NC_008358.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 2020092 4287438 HNE_1949 Hyphomonas neptunium ATCC 15444 glutaredoxin-like protein YP_760650.1 2019757 D 228405 CDS YP_760651.1 114797359 4287213 2020193..2020855 1 NC_008358.1 identified by similarity to GB:AAB81575.1; putative outer surface protein 2020855 4287213 HNE_1950 Hyphomonas neptunium ATCC 15444 putative outer surface protein YP_760651.1 2020193 D 228405 CDS YP_760652.1 114798740 4289303 2020928..2022283 1 NC_008358.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 2022283 rimO 4289303 rimO Hyphomonas neptunium ATCC 15444 30S ribosomal protein S12 methylthiotransferase YP_760652.1 2020928 D 228405 CDS YP_760653.1 114797734 4288271 complement(2022284..2022982) 1 NC_008358.1 identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965; putative isonitrile hydratase 2022982 4288271 HNE_1952 Hyphomonas neptunium ATCC 15444 putative isonitrile hydratase YP_760653.1 2022284 R 228405 CDS YP_760654.1 114798987 4288263 2023049..2024017 1 NC_008358.1 identified by similarity to GB:AAN18035.1; match to protein family HMM PF00165; match to protein family HMM PF01965; putative transcriptional regulator DarR 2024017 4288263 HNE_1953 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator DarR YP_760654.1 2023049 D 228405 CDS YP_760655.1 114797961 4289573 2024112..2025041 1 NC_008358.1 identified by similarity to GB:AAO78504.1; hypothetical protein 2025041 4289573 HNE_1954 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760655.1 2024112 D 228405 CDS YP_760656.1 114797661 4288139 complement(2025065..2025889) 1 NC_008358.1 identified by similarity to GB:CAD13666.1; match to protein family HMM PF03976; hypothetical protein 2025889 4288139 HNE_1955 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760656.1 2025065 R 228405 CDS YP_760657.1 114798436 4290298 complement(2025965..2026582) 1 NC_008358.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2026582 rpsD 4290298 rpsD Hyphomonas neptunium ATCC 15444 30S ribosomal protein S4 YP_760657.1 2025965 R 228405 CDS YP_760658.1 114799226 4288289 2026788..2027606 1 NC_008358.1 identified by similarity to SP:P50198; match to protein family HMM PF00106; putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX 2027606 4288289 HNE_1957 Hyphomonas neptunium ATCC 15444 putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX YP_760658.1 2026788 D 228405 CDS YP_760659.1 114800007 4288799 complement(2027603..2028070) 1 NC_008358.1 identified by match to protein family HMM PF07883; cupin domain-containing protein 2028070 4288799 HNE_1958 Hyphomonas neptunium ATCC 15444 cupin domain-containing protein YP_760659.1 2027603 R 228405 CDS YP_760660.1 114798700 4289770 complement(2028087..2029289) 1 NC_008358.1 identified by match to protein family HMM PF02515; CAIB/BAIF family protein 2029289 4289770 HNE_1959 Hyphomonas neptunium ATCC 15444 CAIB/BAIF family protein YP_760660.1 2028087 R 228405 CDS YP_760661.1 114797892 4288080 complement(2029370..2030245) 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2030245 4288080 HNE_1960 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_760661.1 2029370 R 228405 CDS YP_760662.1 114797690 4287896 2030725..2031015 1 NC_008358.1 identified by match to protein family HMM PF00166; chaperonin, 10 kDa 2031015 groES 4287896 groES Hyphomonas neptunium ATCC 15444 chaperonin, 10 kDa YP_760662.1 2030725 D 228405 CDS YP_760663.1 114800428 4290372 2031071..2032714 1 NC_008358.1 identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348; chaperonin GroEL 2032714 groL 4290372 groL Hyphomonas neptunium ATCC 15444 chaperonin GroEL YP_760663.1 2031071 D 228405 CDS YP_760664.1 114799065 4288964 2032851..2034461 1 NC_008358.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 2034461 4288964 HNE_1963 Hyphomonas neptunium ATCC 15444 acyl-CoA synthetase YP_760664.1 2032851 D 228405 CDS YP_760665.1 114798448 4290310 complement(2034467..2034907) 1 NC_008358.1 identified by match to protein family HMM PF03061; thioesterase family protein 2034907 4290310 HNE_1964 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_760665.1 2034467 R 228405 CDS YP_760666.1 114798804 4289154 complement(2034894..2035346) 1 NC_008358.1 identified by similarity to GB:BAC49676.1; match to protein family HMM PF02643; hypothetical protein 2035346 4289154 HNE_1965 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760666.1 2034894 R 228405 CDS YP_760667.1 114798263 4287243 complement(2035400..2035927) 1 NC_008358.1 identified by match to protein family HMM PF00313; cold shock DNA-binding protein 2035927 4287243 HNE_1966 Hyphomonas neptunium ATCC 15444 cold shock DNA-binding protein YP_760667.1 2035400 R 228405 CDS YP_760668.1 114797921 4287271 complement(2036206..2037999) 1 NC_008358.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 2037999 recJ 4287271 recJ Hyphomonas neptunium ATCC 15444 single-stranded-DNA-specific exonuclease RecJ YP_760668.1 2036206 R 228405 CDS YP_760669.1 114799823 4290131 2038174..2039472 1 NC_008358.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 2039472 purB 4290131 purB Hyphomonas neptunium ATCC 15444 adenylosuccinate lyase YP_760669.1 2038174 D 228405 CDS YP_760670.1 114799464 4290045 2039612..2040907 1 NC_008358.1 identified by match to protein family HMM PF01244; dipeptidase family protein 2040907 4290045 HNE_1970 Hyphomonas neptunium ATCC 15444 dipeptidase family protein YP_760670.1 2039612 D 228405 CDS YP_760671.1 114800552 4289054 2040910..2042268 1 NC_008358.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 2042268 4289054 HNE_1971 Hyphomonas neptunium ATCC 15444 Na+/H+ antiporter family protein YP_760671.1 2040910 D 228405 CDS YP_760672.1 114799002 4288434 2042361..2043104 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2043104 4288434 HNE_1972 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760672.1 2042361 D 228405 CDS YP_760673.1 114799737 4288021 2043287..2045449 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2045449 4288021 HNE_1973 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760673.1 2043287 D 228405 CDS YP_760674.1 114797424 4287161 complement(2045536..2046951) 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase 2046951 lpdA1 4287161 lpdA1 Hyphomonas neptunium ATCC 15444 pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase YP_760674.1 2045536 R 228405 CDS YP_760675.1 114798189 4288007 complement(2046976..2048307) 1 NC_008358.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; pyruvate dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase 2048307 pdhC 4288007 pdhC Hyphomonas neptunium ATCC 15444 pyruvate dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase YP_760675.1 2046976 R 228405 CDS YP_760676.1 114798083 4288231 complement(2048307..2049719) 1 NC_008358.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 2049719 pdhB 4288231 pdhB Hyphomonas neptunium ATCC 15444 pyruvate dehydrogenase subunit beta YP_760676.1 2048307 R 228405 CDS YP_760677.1 114799576 4289072 complement(2049784..2050794) 1 NC_008358.1 identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha 2050794 pdhA 4289072 pdhA Hyphomonas neptunium ATCC 15444 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha YP_760677.1 2049784 R 228405 CDS YP_760678.1 114800148 4290481 complement(2050861..2051166) 1 NC_008358.1 identified by match to protein family HMM PF04977; septum formation initiator family protein 2051166 4290481 HNE_1978 Hyphomonas neptunium ATCC 15444 septum formation initiator family protein YP_760678.1 2050861 R 228405 CDS YP_760679.1 114797866 4287137 complement(2051247..2053118) 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2053118 4287137 HNE_1979 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_760679.1 2051247 R 228405 CDS YP_760680.1 114797139 4288356 complement(2053244..2054524) 1 NC_008358.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2054524 eno 4288356 eno Hyphomonas neptunium ATCC 15444 phosphopyruvate hydratase YP_760680.1 2053244 R 228405 CDS YP_760681.1 114798161 4287650 complement(2054634..2054819) 1 NC_008358.1 identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; 50S ribosomal protein L32 2054819 rpmF 4287650 rpmF Hyphomonas neptunium ATCC 15444 50S ribosomal protein L32 YP_760681.1 2054634 R 228405 CDS YP_760682.1 114797379 4287310 complement(2055223..2055960) 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 2055960 4287310 HNE_1982 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_760682.1 2055223 R 228405 CDS YP_760683.1 114798334 4287117 complement(2055960..2057057) 1 NC_008358.1 identified by match to protein family HMM PF02515; putative alpha-methylacyl-CoA racemase 2057057 4287117 HNE_1983 Hyphomonas neptunium ATCC 15444 putative alpha-methylacyl-CoA racemase YP_760683.1 2055960 R 228405 CDS YP_760684.1 114799453 4289669 2057188..2058450 1 NC_008358.1 hypothetical protein 2058450 4289669 HNE_1984 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760684.1 2057188 D 228405 CDS YP_760685.1 114800270 4287505 complement(2058461..2061898) 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 2061898 mfd 4287505 mfd Hyphomonas neptunium ATCC 15444 transcription-repair coupling factor YP_760685.1 2058461 R 228405 CDS YP_760686.1 114797711 4289361 complement(2062055..2062318) 1 NC_008358.1 identified by match to protein family HMM PF03937; hypothetical protein 2062318 4289361 HNE_1986 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760686.1 2062055 R 228405 CDS YP_760687.1 114797135 4288352 2062535..2064613 1 NC_008358.1 identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; putative ATP-dependent DNA helicase recG 2064613 4288352 HNE_1987 Hyphomonas neptunium ATCC 15444 putative ATP-dependent DNA helicase recG YP_760687.1 2062535 D 228405 CDS YP_760688.1 114798373 4290430 complement(2064619..2065332) 1 NC_008358.1 identified by similarity to PIR:AI2795; match to protein family HMM PF04367; hypothetical protein 2065332 4290430 HNE_1988 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760688.1 2064619 R 228405 CDS YP_760689.1 114799195 4289950 2065412..2066422 1 NC_008358.1 identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 2066422 4289950 HNE_1989 Hyphomonas neptunium ATCC 15444 phosphotransferase enzyme family protein YP_760689.1 2065412 D 228405 CDS YP_760690.1 114800344 4289278 2066415..2066786 1 NC_008358.1 hypothetical protein 2066786 4289278 HNE_1990 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760690.1 2066415 D 228405 CDS YP_760691.1 114797178 4287048 2066802..2067530 1 NC_008358.1 hypothetical protein 2067530 4287048 HNE_1991 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760691.1 2066802 D 228405 CDS YP_760692.1 114798053 4289528 complement(2067540..2068190) 1 NC_008358.1 identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase 2068190 maiA 4289528 maiA Hyphomonas neptunium ATCC 15444 maleylacetoacetate isomerase YP_760692.1 2067540 R 228405 CDS YP_760693.1 114798889 4287580 complement(2068187..2069509) 1 NC_008358.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 2069509 astB 4287580 astB Hyphomonas neptunium ATCC 15444 succinylarginine dihydrolase YP_760693.1 2068187 R 228405 CDS YP_760694.1 114799655 4288677 complement(2069506..2070339) 1 NC_008358.1 identified by match to protein family HMM PF05175; putative methyltransferase 2070339 4288677 HNE_1994 Hyphomonas neptunium ATCC 15444 putative methyltransferase YP_760694.1 2069506 R 228405 CDS YP_760695.1 114799206 4289961 complement(2070351..2071805) 1 NC_008358.1 identified by similarity to SP:P76217; match to protein family HMM PF00171; succinylglutamic semialdehyde dehydrogenase 2071805 astD 4289961 astD Hyphomonas neptunium ATCC 15444 succinylglutamic semialdehyde dehydrogenase YP_760695.1 2070351 R 228405 CDS YP_760696.1 114798484 4288767 complement(2071805..2072845) 1 NC_008358.1 identified by match to protein family HMM PF04958; arginine N-succinyltransferase 2072845 astA 4288767 astA Hyphomonas neptunium ATCC 15444 arginine N-succinyltransferase YP_760696.1 2071805 R 228405 CDS YP_760697.1 114797736 4288273 complement(2072846..2074033) 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein 2074033 4288273 HNE_1997 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760697.1 2072846 R 228405 CDS YP_760698.1 114800514 4288859 complement(2074218..2075381) 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family protein 2075381 4288859 HNE_1998 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_760698.1 2074218 R 228405 CDS YP_760699.1 114799751 4288035 complement(2076100..2076642) 1 NC_008358.1 identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 2076642 nusG 4288035 nusG Hyphomonas neptunium ATCC 15444 transcription termination/antitermination factor NusG YP_760699.1 2076100 R 228405 CDS YP_760700.1 114798990 4288266 complement(2076687..2076905) 1 NC_008358.1 identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 2076905 secE 4288266 secE Hyphomonas neptunium ATCC 15444 Preprotein translocase subunit SecE YP_760700.1 2076687 R 228405 CDS YP_760701.1 114798431 4288170 complement(2077049..2077939) 1 NC_008358.1 identified by match to protein family HMM PF03758; senescence marker protein-30 family protein 2077939 4288170 HNE_2002 Hyphomonas neptunium ATCC 15444 senescence marker protein-30 family protein YP_760701.1 2077049 R 228405 CDS YP_760702.1 114798359 4290416 complement(2077976..2078848) 1 NC_008358.1 identified by similarity to SP:P31459; putative 2-dehydro-3-deoxygalactonokinase 2078848 4290416 HNE_2003 Hyphomonas neptunium ATCC 15444 putative 2-dehydro-3-deoxygalactonokinase YP_760702.1 2077976 R 228405 CDS YP_760703.1 114800510 4288855 2079003..2079830 1 NC_008358.1 identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 2079830 4288855 HNE_2004 Hyphomonas neptunium ATCC 15444 MazG family protein YP_760703.1 2079003 D 228405 CDS YP_760704.1 114799526 4288919 complement(2079844..2081172) 1 NC_008358.1 identified by match to protein family HMM PF01926; putative GTP-binding protein HflX 2081172 4288919 HNE_2005 Hyphomonas neptunium ATCC 15444 putative GTP-binding protein HflX YP_760704.1 2079844 R 228405 CDS YP_760705.1 114797999 4289320 complement(2081180..2081428) 1 NC_008358.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 2081428 hfq 4289320 hfq Hyphomonas neptunium ATCC 15444 RNA-binding protein Hfq YP_760705.1 2081180 R 228405 CDS YP_760706.1 114797385 4287081 complement(2081505..2082911) 1 NC_008358.1 identified by similarity to SP:P21166; putative potassium uptake protein TrkH 2082911 4287081 HNE_2007 Hyphomonas neptunium ATCC 15444 putative potassium uptake protein TrkH YP_760706.1 2081505 R 228405 CDS YP_760707.1 114799538 4288523 complement(2082915..2084288) 1 NC_008358.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 2084288 trkA 4288523 trkA Hyphomonas neptunium ATCC 15444 potassium transporter peripheral membrane protein YP_760707.1 2082915 R 228405 CDS YP_760708.1 114799003 4288435 complement(2084313..2085698) 1 NC_008358.1 identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 2085698 ntrX 4288435 ntrX Hyphomonas neptunium ATCC 15444 sigma-54 dependent DNA-binding response regulator YP_760708.1 2084313 R 228405 CDS YP_760709.1 114800247 4287482 complement(2085712..2087991) 1 NC_008358.1 identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; nitrogen regulation protein NtrY 2087991 ntrY 4287482 ntrY Hyphomonas neptunium ATCC 15444 nitrogen regulation protein NtrY YP_760709.1 2085712 R 228405 CDS YP_760710.1 114799444 4289660 complement(2088097..2089470) 1 NC_008358.1 identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; nitrogen regulation protein NR(I) 2089470 glnG 4289660 glnG Hyphomonas neptunium ATCC 15444 nitrogen regulation protein NR(I) YP_760710.1 2088097 R 228405 CDS YP_760711.1 114800221 4288995 complement(2089476..2090534) 1 NC_008358.1 identified by similarity to SP:P45670; match to protein family HMM PF00512; match to protein family HMM PF02518; nitrogen regulation protein NR(II) 2090534 glnL 4288995 glnL Hyphomonas neptunium ATCC 15444 nitrogen regulation protein NR(II) YP_760711.1 2089476 R 228405 CDS YP_760712.1 114799466 4290047 complement(2090531..2091568) 1 NC_008358.1 identified by similarity to SP:Q08111; match to protein family HMM PF01207; putative tRNA-dihydrouridine synthase 2091568 4290047 HNE_2013 Hyphomonas neptunium ATCC 15444 putative tRNA-dihydrouridine synthase YP_760712.1 2090531 R 228405 CDS YP_760713.1 114798198 4287822 2091646..2092782 1 NC_008358.1 identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453; IspD/IspF bifunctional enzyme 2092782 ispDF 4287822 ispDF Hyphomonas neptunium ATCC 15444 IspD/IspF bifunctional enzyme YP_760713.1 2091646 D 228405 CDS YP_760714.1 114797375 4287306 2092862..2093032 1 NC_008358.1 hypothetical protein 2093032 4287306 HNE_2015 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760714.1 2092862 D 228405 CDS YP_760715.1 114797752 4288210 2093046..2093831 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2093831 4288210 HNE_2016 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_760715.1 2093046 D 228405 CDS YP_760716.1 114798844 4287808 2093883..2094344 1 NC_008358.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA domain-containing protein 2094344 4287808 HNE_2017 Hyphomonas neptunium ATCC 15444 CinA domain-containing protein YP_760716.1 2093883 D 228405 CDS YP_760717.1 114798090 4288238 2094601..2095776 1 NC_008358.1 identified by match to protein family HMM PF00665; ISHne2, transposase 2095776 4288238 HNE_2018 Hyphomonas neptunium ATCC 15444 ISHne2, transposase YP_760717.1 2094601 D 228405 CDS YP_760718.1 114798642 4289901 complement(2096078..2096332) 1 NC_008358.1 hypothetical protein 2096332 4289901 HNE_2019 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760718.1 2096078 R 228405 CDS YP_760719.1 114799654 4288676 complement(2096534..2096995) 1 NC_008358.1 identified by match to protein family HMM PF03364; cyclase/dehydrase family protein 2096995 4288676 HNE_2020 Hyphomonas neptunium ATCC 15444 cyclase/dehydrase family protein YP_760719.1 2096534 R 228405 CDS YP_760720.1 114800398 4290342 complement(2096999..2098054) 1 NC_008358.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2098054 lipA 4290342 lipA Hyphomonas neptunium ATCC 15444 lipoyl synthase YP_760720.1 2096999 R 228405 CDS YP_760721.1 114797277 4290541 2098134..2099720 1 NC_008358.1 identified by similarity to SP:P31119; match to protein family HMM PF00501; 2-acylglycerophosphoethanolamine acyltransferase 2099720 aas 4290541 aas Hyphomonas neptunium ATCC 15444 2-acylglycerophosphoethanolamine acyltransferase YP_760721.1 2098134 D 228405 CDS YP_760722.1 114798279 4287220 complement(2099728..2100570) 1 NC_008358.1 identified by match to protein family HMM PF00561; poly(3-hydroxyalkanoate) depolymerase 2100570 phaB 4287220 phaB Hyphomonas neptunium ATCC 15444 poly(3-hydroxyalkanoate) depolymerase YP_760722.1 2099728 R 228405 CDS YP_760723.1 114798910 4288496 complement(2100593..2102281) 1 NC_008358.1 identified by similarity to GB:BAB78721.1; match to protein family HMM PF00561; match to protein family HMM PF07167; PHA-synthase 2 2102281 4288496 HNE_2024 Hyphomonas neptunium ATCC 15444 PHA-synthase 2 YP_760723.1 2100593 R 228405 CDS YP_760724.1 114799904 4290234 2102441..2103073 1 NC_008358.1 identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440; transcriptional regulator PhaD 2103073 phaD 4290234 phaD Hyphomonas neptunium ATCC 15444 transcriptional regulator PhaD YP_760724.1 2102441 D 228405 CDS YP_760725.1 114797860 4287131 2104100..2104801 1 NC_008358.1 identified by match to protein family HMM PF01738; dienelactone hydrolase family protein 2104801 4287131 HNE_2027 Hyphomonas neptunium ATCC 15444 dienelactone hydrolase family protein YP_760725.1 2104100 D 228405 CDS YP_760726.1 114798462 4287697 complement(2104884..2105570) 1 NC_008358.1 identified by similarity to GB:CAA11074.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154; phosphate regulon transcriptional regulatory protein PhoB 2105570 phoB 4287697 phoB Hyphomonas neptunium ATCC 15444 phosphate regulon transcriptional regulatory protein PhoB YP_760726.1 2104884 R 228405 CDS YP_760727.1 114799041 4290519 complement(2105602..2106288) 1 NC_008358.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 2106288 phoU 4290519 phoU Hyphomonas neptunium ATCC 15444 phosphate transport system regulatory protein PhoU YP_760727.1 2105602 R 228405 CDS YP_760728.1 114799554 4288539 complement(2106300..2107127) 1 NC_008358.1 identified by similarity to GB:BAA08137.1; match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 2107127 pstB 4288539 pstB Hyphomonas neptunium ATCC 15444 phosphate ABC transporter ATP-binding protein YP_760728.1 2106300 R 228405 CDS YP_760729.1 114799902 4290232 complement(2107127..2108704) 1 NC_008358.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 2108704 pstA 4290232 pstA Hyphomonas neptunium ATCC 15444 phosphate ABC transporter permease YP_760729.1 2107127 R 228405 CDS YP_760730.1 114797381 4287312 complement(2108697..2110112) 1 NC_008358.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 2110112 pstC 4287312 pstC Hyphomonas neptunium ATCC 15444 phosphate ABC transporter permease YP_760730.1 2108697 R 228405 CDS YP_760731.1 114798299 4289463 2110242..2110799 1 NC_008358.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2110799 hslV 4289463 hslV Hyphomonas neptunium ATCC 15444 ATP-dependent protease peptidase subunit YP_760731.1 2110242 D 228405 CDS YP_760732.1 114800330 4289264 2110902..2112206 1 NC_008358.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2112206 hslU 4289264 hslU Hyphomonas neptunium ATCC 15444 ATP-dependent protease ATP-binding subunit HslU YP_760732.1 2110902 D 228405 CDS YP_760733.1 114797758 4288216 complement(2112217..2112675) 1 NC_008358.1 identified by match to protein family HMM PF01638; hypothetical protein 2112675 4288216 HNE_2035 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760733.1 2112217 R 228405 CDS YP_760734.1 114798791 4287774 complement(2112629..2113627) 1 NC_008358.1 identified by match to protein family HMM PF00294; PfkB family kinase 2113627 4287774 HNE_2036 Hyphomonas neptunium ATCC 15444 PfkB family kinase YP_760734.1 2112629 R 228405 CDS YP_760735.1 114798888 4287579 2113775..2114653 1 NC_008358.1 identified by similarity to GB:AAK25694.1; hypothetical protein 2114653 4287579 HNE_2037 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760735.1 2113775 D 228405 CDS YP_760736.1 114799858 4287440 complement(2114650..2114997) 1 NC_008358.1 putative lipoprotein 2114997 4287440 HNE_2038 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760736.1 2114650 R 228405 CDS YP_760737.1 114797353 4287207 complement(2115011..2116699) 1 NC_008358.1 identified by match to protein family HMM PF03572; peptidase family protein 2116699 4287207 HNE_2039 Hyphomonas neptunium ATCC 15444 peptidase family protein YP_760737.1 2115011 R 228405 CDS YP_760738.1 114798206 4287830 complement(2116762..2117526) 1 NC_008358.1 identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 2117526 nth 4287830 nth Hyphomonas neptunium ATCC 15444 endonuclease III YP_760738.1 2116762 R 228405 CDS YP_760739.1 114797443 4288563 2117572..2118060 1 NC_008358.1 hypothetical protein 2118060 4288563 HNE_2041 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760739.1 2117572 D 228405 CDS YP_760740.1 114799772 4289789 2118227..2119504 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 2119504 4289789 HNE_2042 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_760740.1 2118227 D 228405 CDS YP_760741.1 114799004 4288436 2119569..2120240 1 NC_008358.1 identified by match to protein family HMM PF00881; nitroreductase family protein 2120240 4288436 HNE_2043 Hyphomonas neptunium ATCC 15444 nitroreductase family protein YP_760741.1 2119569 D 228405 CDS YP_760742.1 114799719 4289137 2120290..2120898 1 NC_008358.1 hypothetical protein 2120898 4289137 HNE_2044 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760742.1 2120290 D 228405 CDS YP_760743.1 114798961 4287418 complement(2120908..2121612) 1 NC_008358.1 identified by similarity to GB:AAF19809.1; match to protein family HMM PF01648; match to protein family HMM TIGR00556; putative 4'-phosphopantetheinyl transferase 2121612 4287418 HNE_2045 Hyphomonas neptunium ATCC 15444 putative 4'-phosphopantetheinyl transferase YP_760743.1 2120908 R 228405 CDS YP_760744.1 114798683 4289864 complement(2121640..2122659) 1 NC_008358.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 2122659 scpB 4289864 scpB Hyphomonas neptunium ATCC 15444 segregation and condensation protein B YP_760744.1 2121640 R 228405 CDS YP_760745.1 114797903 4288091 complement(2122646..2123479) 1 NC_008358.1 identified by match to protein family HMM PF02616; segregation and condensation protein A 2123479 scpA 4288091 scpA Hyphomonas neptunium ATCC 15444 segregation and condensation protein A YP_760745.1 2122646 R 228405 CDS YP_760746.1 114797421 4287158 complement(2123476..2124510) 1 NC_008358.1 identified by similarity to SP:P75949; match to protein family HMM PF00933; beta-hexosaminidase 2124510 nagZ 4287158 nagZ Hyphomonas neptunium ATCC 15444 beta-hexosaminidase YP_760746.1 2123476 R 228405 CDS YP_760747.1 114799450 4289666 complement(2124514..2125323) 1 NC_008358.1 identified by similarity to GB:AAN29806.1; match to protein family HMM PF05036; sporulation repeat-containing protein 2125323 4289666 HNE_2049 Hyphomonas neptunium ATCC 15444 sporulation repeat-containing protein YP_760747.1 2124514 R 228405 CDS YP_760748.1 114797343 4287197 complement(2125427..2126599) 1 NC_008358.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; putative deoxyguanosinetriphosphate triphosphohydrolase 2126599 4287197 HNE_2050 Hyphomonas neptunium ATCC 15444 putative deoxyguanosinetriphosphate triphosphohydrolase YP_760748.1 2125427 R 228405 CDS YP_760749.1 114799698 4289116 2126627..2126968 1 NC_008358.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 2126968 4289116 HNE_2051 Hyphomonas neptunium ATCC 15444 iron-sulfur cluster assembly accessory protein YP_760749.1 2126627 D 228405 CDS YP_760750.1 114798159 4287648 2127283..2128452 1 NC_008358.1 identified by similarity to GB:AAF18956.1; match to protein family HMM PF06441; epoxide hydrolase 2128452 4287648 HNE_2052 Hyphomonas neptunium ATCC 15444 epoxide hydrolase YP_760750.1 2127283 D 228405 CDS YP_760751.1 114797350 4287204 2128568..2129392 1 NC_008358.1 hypothetical protein 2129392 4287204 HNE_2053 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760751.1 2128568 D 228405 CDS YP_760752.1 114800202 4288976 complement(2129624..2130088) 1 NC_008358.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB 2130088 nusB 4288976 nusB Hyphomonas neptunium ATCC 15444 transcription antitermination factor NusB YP_760752.1 2129624 R 228405 CDS YP_760753.1 114799272 4288587 complement(2130088..2130516) 1 NC_008358.1 identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase 2130516 ribH 4288587 ribH Hyphomonas neptunium ATCC 15444 6,7-dimethyl-8-ribityllumazine synthase YP_760753.1 2130088 R 228405 CDS YP_760754.1 114799819 4290127 complement(2130518..2131645) 1 NC_008358.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA 2131645 ribAB 4290127 ribAB Hyphomonas neptunium ATCC 15444 riboflavin biosynthesis protein RibA YP_760754.1 2130518 R 228405 CDS YP_760755.1 114798806 4289156 complement(2131649..2132269) 1 NC_008358.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2132269 ribE 4289156 ribE Hyphomonas neptunium ATCC 15444 riboflavin synthase subunit alpha YP_760755.1 2131649 R 228405 CDS YP_760756.1 114798296 4289460 complement(2132288..2132941) 1 NC_008358.1 identified by match to protein family HMM PF01872; match to protein family HMM TIGR00227; riboflavin biosynthesis protein RibD domain-containing protein 2132941 4289460 HNE_2058 Hyphomonas neptunium ATCC 15444 riboflavin biosynthesis protein RibD domain-containing protein YP_760756.1 2132288 R 228405 CDS YP_760757.1 114797364 4287295 complement(2132938..2133417) 1 NC_008358.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator 2133417 nrdR 4287295 nrdR Hyphomonas neptunium ATCC 15444 NrdR family transcriptional regulator YP_760757.1 2132938 R 228405 CDS YP_760758.1 114799314 4287323 complement(2133424..2134731) 1 NC_008358.1 identified by match to protein family HMM PF00464; serine hydroxymethyl transferase 2134731 glyA 4287323 glyA Hyphomonas neptunium ATCC 15444 serine hydroxymethyl transferase YP_760758.1 2133424 R 228405 CDS YP_760759.1 114800329 4289263 2134770..2135348 1 NC_008358.1 identified by match to protein family HMM PF05443; transcriptional regulator 2135348 4289263 HNE_2061 Hyphomonas neptunium ATCC 15444 transcriptional regulator YP_760759.1 2134770 D 228405 CDS YP_760760.1 114797766 4288224 complement(2135435..2136652) 1 NC_008358.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 2136652 hemA 4288224 hemA Hyphomonas neptunium ATCC 15444 5-aminolevulinate synthase YP_760760.1 2135435 R 228405 CDS YP_760761.1 114799874 4287457 complement(2136749..2137540) 1 NC_008358.1 identified by match to protein family HMM PF00596; aldolase II superfamily protein 2137540 4287457 HNE_2063 Hyphomonas neptunium ATCC 15444 aldolase II superfamily protein YP_760761.1 2136749 R 228405 CDS YP_760762.1 114797751 4288288 2137753..2138520 1 NC_008358.1 identified by match to protein family HMM PF01513; ATP-NAD kinase 2138520 ppnK 4288288 ppnK Hyphomonas neptunium ATCC 15444 ATP-NAD kinase YP_760762.1 2137753 D 228405 CDS YP_760763.1 114798002 4289323 2138600..2139220 1 NC_008358.1 identified by match to protein family HMM PF01627; hypothetical protein 2139220 4289323 HNE_2065 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760763.1 2138600 D 228405 CDS YP_760764.1 114799236 4288299 complement(2139217..2140023) 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2140023 4288299 HNE_2066 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_760764.1 2139217 R 228405 CDS YP_760765.1 114799143 4287797 2140138..2140815 1 NC_008358.1 hypothetical protein 2140815 4287797 HNE_2067 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760765.1 2140138 D 228405 CDS YP_760766.1 114800125 4290458 complement(2140812..2141975) 1 NC_008358.1 hypothetical protein 2141975 4290458 HNE_2068 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760766.1 2140812 R 228405 CDS YP_760767.1 114797334 4289412 complement(2142130..2143467) 1 NC_008358.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2143467 tig 4289412 tig Hyphomonas neptunium ATCC 15444 trigger factor YP_760767.1 2142130 R 228405 CDS YP_760768.1 114798555 4287399 2144027..2145481 1 NC_008358.1 identified by match to protein family HMM PF01040; hypothetical protein 2145481 4287399 HNE_2070 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760768.1 2144027 D 228405 CDS YP_760769.1 114798772 4289837 2145478..2145876 1 NC_008358.1 hypothetical protein 2145876 4289837 HNE_2071 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760769.1 2145478 D 228405 CDS YP_760770.1 114799530 4288923 2146064..2147533 1 NC_008358.1 identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate biosynthesis protein AlgI 2147533 algI 4288923 algI Hyphomonas neptunium ATCC 15444 alginate biosynthesis protein AlgI YP_760770.1 2146064 D 228405 CDS YP_760771.1 114798963 4287420 2147496..2148593 1 NC_008358.1 hypothetical protein 2148593 4287420 HNE_2073 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760771.1 2147496 D 228405 CDS YP_760772.1 114799754 4288038 2148615..2148860 1 NC_008358.1 identified by similarity to SP:P11830; acyl carrier protein 2148860 acpP2 4288038 acpP2 Hyphomonas neptunium ATCC 15444 acyl carrier protein YP_760772.1 2148615 D 228405 CDS YP_760773.1 114797975 4288338 2148908..2150155 1 NC_008358.1 identified by match to protein family HMM PF00501; AMP-binding domain-containing protein 2150155 4288338 HNE_2075 Hyphomonas neptunium ATCC 15444 AMP-binding domain-containing protein YP_760773.1 2148908 D 228405 CDS YP_760774.1 114798063 4287843 2150188..2150925 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2150925 4287843 HNE_2076 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760774.1 2150188 D 228405 CDS YP_760775.1 114800405 4290349 complement(2150926..2152224) 1 NC_008358.1 identified by similarity to GB:BAC18881.1; hypothetical protein 2152224 4290349 HNE_2077 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760775.1 2150926 R 228405 CDS YP_760776.1 114797560 4287278 2152624..2153130 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2153130 4287278 HNE_2079 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760776.1 2152624 D 228405 CDS YP_760777.1 114799199 4289954 complement(2153133..2154575) 1 NC_008358.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase family protein 2154575 4289954 HNE_2080 Hyphomonas neptunium ATCC 15444 carbohydrate kinase family protein YP_760777.1 2153133 R 228405 CDS YP_760778.1 114799998 4290213 complement(2154583..2155122) 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 2155122 4290213 HNE_2081 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_760778.1 2154583 R 228405 CDS YP_760779.1 114797257 4288455 complement(2155119..2155928) 1 NC_008358.1 hypothetical protein 2155928 4288455 HNE_2082 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760779.1 2155119 R 228405 CDS YP_760780.1 114797943 4287917 2156180..2156518 1 NC_008358.1 identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2156518 glnB 4287917 glnB Hyphomonas neptunium ATCC 15444 nitrogen regulatory protein P-II YP_760780.1 2156180 D 228405 CDS YP_760781.1 114800384 4288747 2156598..2158001 1 NC_008358.1 identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 2158001 glnA 4288747 glnA Hyphomonas neptunium ATCC 15444 glutamine synthetase, type I YP_760781.1 2156598 D 228405 CDS YP_760782.1 114797373 4287304 2158088..2159011 1 NC_008358.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2159011 4287304 HNE_2085 Hyphomonas neptunium ATCC 15444 Ser/Thr protein phosphatase family protein YP_760782.1 2158088 D 228405 CDS YP_760783.1 114799276 4288591 complement(2159071..2160333) 1 NC_008358.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2160333 clpX 4288591 clpX Hyphomonas neptunium ATCC 15444 ATP-dependent protease ATP-binding subunit ClpX YP_760783.1 2159071 R 228405 CDS YP_760784.1 114800297 4287942 complement(2160460..2161083) 1 NC_008358.1 identified by similarity to SP:P19245; match to protein family HMM PF00574; ATP-dependent Clp protease, proteolytic subunit ClpP 2161083 clpP 4287942 clpP Hyphomonas neptunium ATCC 15444 ATP-dependent Clp protease, proteolytic subunit ClpP YP_760784.1 2160460 R 228405 CDS YP_760785.1 114799820 4290128 complement(2161202..2162095) 1 NC_008358.1 identified by match to protein family HMM PF00561; hypothetical protein 2162095 4290128 HNE_2088 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760785.1 2161202 R 228405 CDS YP_760786.1 114797324 4289402 complement(2162105..2163211) 1 NC_008358.1 identified by match to protein family HMM PF00561; hypothetical protein 2163211 4289402 HNE_2089 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760786.1 2162105 R 228405 CDS YP_760787.1 114800269 4287504 2163407..2165143 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M28 family peptidase 2165143 4287504 HNE_2090 Hyphomonas neptunium ATCC 15444 M28 family peptidase YP_760787.1 2163407 D 228405 CDS YP_760788.1 114797809 4288073 2165194..2165982 1 NC_008358.1 hypothetical protein 2165982 4288073 HNE_2091 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760788.1 2165194 D 228405 CDS YP_760789.1 114797562 4287280 complement(2165979..2166911) 1 NC_008358.1 identified by similarity to SP:P33695; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 2166911 4287280 HNE_2092 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_760789.1 2165979 R 228405 CDS YP_760790.1 114798530 4288095 complement(2167109..2168263) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 2168263 4288095 HNE_2093 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_760790.1 2167109 R 228405 CDS YP_760791.1 114799055 4288954 complement(2168293..2169486) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 2169486 4288954 HNE_2094 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_760791.1 2168293 R 228405 CDS YP_760792.1 114800060 4289383 complement(2169615..2170610) 1 NC_008358.1 identified by similarity to SP:P29935; match to protein family HMM PF02277; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2170610 4289383 HNE_2095 Hyphomonas neptunium ATCC 15444 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_760792.1 2169615 R 228405 CDS YP_760793.1 114799806 4289823 2170750..2170947 1 NC_008358.1 identified by similarity to GB:AAK23289.1; match to protein family HMM PF06945; hypothetical protein 2170947 4289823 HNE_2096 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760793.1 2170750 D 228405 CDS YP_760794.1 114798307 4289471 2170953..2171495 1 NC_008358.1 identified by similarity to GB:AAK23288.1; match to protein family HMM TIGR02281; hypothetical protein 2171495 4289471 HNE_2097 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760794.1 2170953 D 228405 CDS YP_760795.1 114800553 4289055 complement(2171482..2172906) 1 NC_008358.1 identified by similarity to SP:P70789; match to protein family HMM PF00224; match to protein family HMM TIGR01064; pyruvate kinase 2172906 pyk 4289055 pyk Hyphomonas neptunium ATCC 15444 pyruvate kinase YP_760795.1 2171482 R 228405 CDS YP_760796.1 114797194 4287065 2173180..2174916 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2174916 4287065 HNE_2099 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_760796.1 2173180 D 228405 CDS YP_760797.1 114799087 4287741 complement(2174913..2177555) 1 NC_008358.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; putative methionine synthase 2177555 4287741 HNE_2100 Hyphomonas neptunium ATCC 15444 putative methionine synthase YP_760797.1 2174913 R 228405 CDS YP_760798.1 114800042 4289365 complement(2177552..2177965) 1 NC_008358.1 hypothetical protein 2177965 4289365 HNE_2101 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760798.1 2177552 R 228405 CDS YP_760799.1 114797600 4288312 complement(2177977..2179035) 1 NC_008358.1 identified by similarity to SP:O33465; match to protein family HMM PF02574; putative metionine synthase, homocysteine S-methyltransferase subunit 2179035 4288312 HNE_2102 Hyphomonas neptunium ATCC 15444 putative metionine synthase, homocysteine S-methyltransferase subunit YP_760799.1 2177977 R 228405 CDS YP_760800.1 114798390 4288382 complement(2179039..2179953) 1 NC_008358.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 2179953 metF 4288382 metF Hyphomonas neptunium ATCC 15444 5,10-methylenetetrahydrofolate reductase YP_760800.1 2179039 R 228405 CDS YP_760801.1 114799579 4289075 complement(2179950..2180927) 1 NC_008358.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01209; match to protein family HMM PF05175; ArsR family transcriptional regulator 2180927 4289075 HNE_2104 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_760801.1 2179950 R 228405 CDS YP_760802.1 114797269 4290533 2181226..2181993 1 NC_008358.1 identified by match to protein family HMM PF04333; putative lipoprotein VacJ 2181993 4290533 HNE_2105 Hyphomonas neptunium ATCC 15444 putative lipoprotein VacJ YP_760802.1 2181226 D 228405 CDS YP_760803.1 114798048 4289523 2182025..2182651 1 NC_008358.1 identified by match to protein family HMM PF05494; Ttg2 family toluene tolerance protein 2182651 4289523 HNE_2106 Hyphomonas neptunium ATCC 15444 Ttg2 family toluene tolerance protein YP_760803.1 2182025 D 228405 CDS YP_760804.1 114799248 4289678 complement(2182712..2184340) 1 NC_008358.1 identified by similarity to GB:AAD51362.2; match to protein family HMM PF03806; p-aminobenzoyl-glutamate transporter family permease 2184340 4289678 HNE_2107 Hyphomonas neptunium ATCC 15444 p-aminobenzoyl-glutamate transporter family permease YP_760804.1 2182712 R 228405 CDS YP_760805.1 114799944 4290099 2184688..2185614 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne4, transposase 2185614 4290099 HNE_2108 Hyphomonas neptunium ATCC 15444 ISHne4, transposase YP_760805.1 2184688 D 228405 CDS YP_760806.1 114798907 4288493 complement(2185717..2186220) 1 NC_008358.1 hypothetical protein 2186220 4288493 HNE_2109 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760806.1 2185717 R 228405 CDS YP_760807.1 114800422 4290366 complement(2186411..2187814) 1 NC_008358.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 2187814 4290366 HNE_2110 Hyphomonas neptunium ATCC 15444 RND efflux system outer membrane lipoprotein YP_760807.1 2186411 R 228405 CDS YP_760808.1 114799636 4290276 complement(2187811..2191011) 1 NC_008358.1 identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 family protein 2191011 4290276 HNE_2111 Hyphomonas neptunium ATCC 15444 hydrophobe/amphiphile efflux-1 family protein YP_760808.1 2187811 R 228405 CDS YP_760809.1 114800257 4287492 complement(2191076..2192266) 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2192266 4287492 HNE_2112 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760809.1 2191076 R 228405 CDS YP_760810.1 114797422 4287159 2192402..2192974 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2192974 4287159 HNE_2113 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760810.1 2192402 D 228405 CDS YP_760811.1 114797055 4287023 2193080..2194291 1 NC_008358.1 hypothetical protein 2194291 4287023 HNE_2114 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760811.1 2193080 D 228405 CDS YP_760812.1 114800097 4289980 complement(2194360..2196531) 1 NC_008358.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI 2196531 katG 4289980 katG Hyphomonas neptunium ATCC 15444 catalase/peroxidase HPI YP_760812.1 2194360 R 228405 CDS YP_760813.1 114798931 4287875 2196948..2199380 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor 2199380 4287875 HNE_2116 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760813.1 2196948 D 228405 CDS YP_760814.1 114798632 4289891 2199398..2200078 1 NC_008358.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 2200078 4289891 HNE_2117 Hyphomonas neptunium ATCC 15444 2OG-Fe(II) oxygenase YP_760814.1 2199398 D 228405 CDS YP_760815.1 114797920 4287270 2200075..2201172 1 NC_008358.1 identified by similarity to SP:Q9LRS0; match to protein family HMM PF01070; FMN-dependent alpha-hydroxy acid dehydrogenase family protein 2201172 4287270 HNE_2118 Hyphomonas neptunium ATCC 15444 FMN-dependent alpha-hydroxy acid dehydrogenase family protein YP_760815.1 2200075 D 228405 CDS YP_760816.1 114800199 4288973 complement(2201169..2202269) 1 NC_008358.1 identified by similarity to SP:P39849; match to protein family HMM PF00107; aryl-alcohol dehydrogenase 2202269 4288973 HNE_2119 Hyphomonas neptunium ATCC 15444 aryl-alcohol dehydrogenase YP_760816.1 2201169 R 228405 CDS YP_760817.1 114799254 4289684 complement(2202382..2203026) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2203026 4289684 HNE_2120 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760817.1 2202382 R 228405 CDS YP_760818.1 114800271 4287506 complement(2203269..2205605) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2205605 4287506 HNE_2121 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_760818.1 2203269 R 228405 CDS YP_760819.1 114797887 4288075 2206157..2206315 1 NC_008358.1 hypothetical protein 2206315 4288075 HNE_2122 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760819.1 2206157 D 228405 CDS YP_760820.1 114797991 4289312 complement(2206312..2207241) 1 NC_008358.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 2207241 4289312 HNE_2123 Hyphomonas neptunium ATCC 15444 allophanate hydrolase subunit 2 YP_760820.1 2206312 R 228405 CDS YP_760821.1 114800075 4289398 complement(2207246..2207875) 1 NC_008358.1 identified by match to protein family HMM PF02682; allophanate hydrolase subunit 1 2207875 4289398 HNE_2124 Hyphomonas neptunium ATCC 15444 allophanate hydrolase subunit 1 YP_760821.1 2207246 R 228405 CDS YP_760822.1 114797321 4287526 complement(2207872..2208624) 1 NC_008358.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 2208624 4287526 HNE_2125 Hyphomonas neptunium ATCC 15444 LamB/YcsF family protein YP_760822.1 2207872 R 228405 CDS YP_760823.1 114799474 4290055 complement(2208621..2209835) 1 NC_008358.1 identified by match to protein family HMM PF01566; Mn2+/Fe2+ transporter 2209835 4290055 HNE_2126 Hyphomonas neptunium ATCC 15444 Mn2+/Fe2+ transporter YP_760823.1 2208621 R 228405 CDS YP_760824.1 114800249 4287484 complement(2209832..2210842) 1 NC_008358.1 identified by similarity to GB:CAD75571.1; hypothetical protein 2210842 4287484 HNE_2127 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760824.1 2209832 R 228405 CDS YP_760825.1 114800361 4288724 2211196..2213763 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2213763 4288724 HNE_2128 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_760825.1 2211196 D 228405 CDS YP_760826.1 114797787 4289631 2213774..2215222 1 NC_008358.1 identified by similarity to GB:BAC09073.1; hypothetical protein 2215222 4289631 HNE_2129 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760826.1 2213774 D 228405 CDS YP_760827.1 114797656 4288134 2215286..2215963 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2215963 4288134 HNE_2130 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760827.1 2215286 D 228405 CDS YP_760828.1 114798458 4287693 2216085..2216861 1 NC_008358.1 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 2216861 4287693 HNE_2131 Hyphomonas neptunium ATCC 15444 IclR family transcriptional regulator YP_760828.1 2216085 D 228405 CDS YP_760829.1 114799669 4288691 complement(2216858..2217187) 1 NC_008358.1 identified by match to protein family HMM PF05336; hypothetical protein 2217187 4288691 HNE_2132 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760829.1 2216858 R 228405 CDS YP_760830.1 114799021 4287538 2217511..2218815 1 NC_008358.1 identified by match to protein family HMM PF01188; mandelate racemase/muconate lactonizing enzyme family protein 2218815 4287538 HNE_2133 Hyphomonas neptunium ATCC 15444 mandelate racemase/muconate lactonizing enzyme family protein YP_760830.1 2217511 D 228405 CDS YP_760831.1 114797082 4287363 2218812..2219801 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 2219801 4287363 HNE_2134 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_760831.1 2218812 D 228405 CDS YP_760832.1 114798305 4289469 2219804..2220643 1 NC_008358.1 identified by match to protein family HMM PF04909; amidohydrolase family protein 2220643 4289469 HNE_2135 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_760832.1 2219804 D 228405 CDS YP_760833.1 114799043 4290521 2220645..2221382 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2221382 4290521 HNE_2136 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760833.1 2220645 D 228405 CDS YP_760834.1 114800260 4287495 2221394..2222236 1 NC_008358.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 2222236 4287495 HNE_2137 Hyphomonas neptunium ATCC 15444 fumarylacetoacetate hydrolase family protein YP_760834.1 2221394 D 228405 CDS YP_760835.1 114797731 4289246 2222440..2223036 1 NC_008358.1 identified by match to protein family HMM PF05494; Ttg2 family toluene tolerance protein 2223036 4289246 HNE_2138 Hyphomonas neptunium ATCC 15444 Ttg2 family toluene tolerance protein YP_760835.1 2222440 D 228405 CDS YP_760836.1 114798728 4289291 complement(2223118..2223819) 1 NC_008358.1 hypothetical protein 2223819 4289291 HNE_2139 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760836.1 2223118 R 228405 CDS YP_760837.1 114800018 4288810 complement(2223824..2225575) 1 NC_008358.1 hypothetical protein 2225575 4288810 HNE_2140 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760837.1 2223824 R 228405 CDS YP_760838.1 114799219 4289588 complement(2225572..2226270) 1 NC_008358.1 putative lipoprotein 2226270 4289588 HNE_2141 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760838.1 2225572 R 228405 CDS YP_760839.1 114799678 4288700 complement(2226270..2228072) 1 NC_008358.1 identified by match to protein family HMM PF05658; Hep_Hag repeat-containing protein 2228072 4288700 HNE_2142 Hyphomonas neptunium ATCC 15444 Hep_Hag repeat-containing protein YP_760839.1 2226270 R 228405 CDS YP_760840.1 114799836 4290144 2228151..2228876 1 NC_008358.1 identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein 2228876 4290144 HNE_2143 Hyphomonas neptunium ATCC 15444 ECF sigma factor family protein YP_760840.1 2228151 D 228405 CDS YP_760841.1 114798457 4287692 complement(2228827..2231238) 1 NC_008358.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721; serine/threonine protein kinase 2231238 4287692 HNE_2144 Hyphomonas neptunium ATCC 15444 serine/threonine protein kinase YP_760841.1 2228827 R 228405 CDS YP_760842.1 114799644 4290284 2231426..2231965 1 NC_008358.1 putative lipoprotein 2231965 4290284 HNE_2145 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760842.1 2231426 D 228405 CDS YP_760843.1 114798261 4287241 complement(2231971..2234148) 1 NC_008358.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897; match to protein family HMM TIGR01409; protease II 2234148 ptrB 4287241 ptrB Hyphomonas neptunium ATCC 15444 protease II YP_760843.1 2231971 R 228405 CDS YP_760844.1 114797074 4287355 2234601..2235224 1 NC_008358.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 2235224 4287355 HNE_2147 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760844.1 2234601 D 228405 CDS YP_760845.1 114799220 4289589 2235221..2236336 1 NC_008358.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2236336 dprA 4289589 dprA Hyphomonas neptunium ATCC 15444 DNA protecting protein DprA YP_760845.1 2235221 D 228405 CDS YP_760846.1 114798255 4288948 2236584..2238794 1 NC_008358.1 hypothetical protein 2238794 4288948 HNE_2149 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760846.1 2236584 D 228405 CDS YP_760847.1 114797858 4287128 2238936..2240183 1 NC_008358.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 2240183 4287128 HNE_2150 Hyphomonas neptunium ATCC 15444 peptidyl-prolyl cis-trans isomerase domain-containing protein YP_760847.1 2238936 D 228405 CDS YP_760848.1 114798861 4289717 2240235..2241242 1 NC_008358.1 identified by match to protein family HMM PF04166; 4-hydroxythreonine-4-phosphate dehydrogenase 2241242 pdxA 4289717 pdxA Hyphomonas neptunium ATCC 15444 4-hydroxythreonine-4-phosphate dehydrogenase YP_760848.1 2240235 D 228405 CDS YP_760849.1 114799371 4288842 2241239..2242096 1 NC_008358.1 identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 2242096 ksgA 4288842 ksgA Hyphomonas neptunium ATCC 15444 dimethyladenosine transferase YP_760849.1 2241239 D 228405 CDS YP_760850.1 114798626 4289885 complement(2242093..2242746) 1 NC_008358.1 identified by match to protein family HMM PF00625; guanylate kinase 2242746 4289885 HNE_2153 Hyphomonas neptunium ATCC 15444 guanylate kinase YP_760850.1 2242093 R 228405 CDS YP_760851.1 114798477 4288760 complement(2242736..2243620) 1 NC_008358.1 identified by similarity to GB:AAN29406.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 2243620 4288760 HNE_2154 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760851.1 2242736 R 228405 CDS YP_760852.1 114800253 4287488 complement(2243620..2244657) 1 NC_008358.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2244657 4287488 HNE_2155 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760852.1 2243620 R 228405 CDS YP_760853.1 114798980 4288256 complement(2244883..2246169) 1 NC_008358.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 2246169 fabF 4288256 fabF Hyphomonas neptunium ATCC 15444 3-oxoacyl-ACP synthase YP_760853.1 2244883 R 228405 CDS YP_760854.1 114798204 4287828 complement(2246184..2246417) 1 NC_008358.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2246417 acpP 4287828 acpP Hyphomonas neptunium ATCC 15444 acyl carrier protein YP_760854.1 2246184 R 228405 CDS YP_760855.1 114797161 4287620 complement(2246530..2247267) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 2247267 fabG 4287620 fabG Hyphomonas neptunium ATCC 15444 3-oxoacyl-(acyl-carrier-protein) reductase YP_760855.1 2246530 R 228405 CDS YP_760856.1 114799680 4288702 complement(2247271..2247429) 1 NC_008358.1 hypothetical protein 2247429 4288702 HNE_2159 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760856.1 2247271 R 228405 CDS YP_760857.1 114799413 4289550 complement(2247432..2248382) 1 NC_008358.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 2248382 fabD 4289550 fabD Hyphomonas neptunium ATCC 15444 malonyl CoA-acyl carrier protein transacylase YP_760857.1 2247432 R 228405 CDS YP_760858.1 114800162 4290006 2248596..2248934 1 NC_008358.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2248934 rpsF 4290006 rpsF Hyphomonas neptunium ATCC 15444 30S ribosomal protein S6 YP_760858.1 2248596 D 228405 CDS YP_760859.1 114797845 4288789 2248955..2249212 1 NC_008358.1 identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 2249212 rpsR 4288789 rpsR Hyphomonas neptunium ATCC 15444 30S ribosomal protein S18 YP_760859.1 2248955 D 228405 CDS YP_760860.1 114798663 4290409 2249225..2249809 1 NC_008358.1 identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 2249809 rplI 4290409 rplI Hyphomonas neptunium ATCC 15444 50S ribosomal protein L9 YP_760860.1 2249225 D 228405 CDS YP_760861.1 114797768 4288226 2249981..2251471 1 NC_008358.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 2251471 dnaB 4288226 dnaB Hyphomonas neptunium ATCC 15444 replicative DNA helicase YP_760861.1 2249981 D 228405 CDS YP_760862.1 114798747 4287982 complement(2251474..2251959) 1 NC_008358.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA domain-containing protein 2251959 4287982 HNE_2165 Hyphomonas neptunium ATCC 15444 CinA domain-containing protein YP_760862.1 2251474 R 228405 CDS YP_760863.1 114799733 4288017 complement(2251987..2252895) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2252895 4288017 HNE_2166 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_760863.1 2251987 R 228405 CDS YP_760864.1 114797205 4287076 2253044..2254348 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 2254348 4287076 HNE_2167 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_760864.1 2253044 D 228405 CDS YP_760865.1 114798176 4287665 2254361..2255350 1 NC_008358.1 hypothetical protein 2255350 4287665 HNE_2168 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760865.1 2254361 D 228405 CDS YP_760866.1 114799121 4289916 complement(2255386..2256873) 1 NC_008358.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00313; cobyric acid synthase CobQ 2256873 cobQ 4289916 cobQ Hyphomonas neptunium ATCC 15444 cobyric acid synthase CobQ YP_760866.1 2255386 R 228405 CDS YP_760867.1 114797365 4287296 complement(2256971..2257369) 1 NC_008358.1 identified by match to protein family HMM PF07845; hypothetical protein 2257369 4287296 HNE_2170 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760867.1 2256971 R 228405 CDS YP_760868.1 114798321 4287104 complement(2257505..2257642) 1 NC_008358.1 hypothetical protein 2257642 4287104 HNE_2171 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760868.1 2257505 R 228405 CDS YP_760869.1 114800469 4289422 complement(2257608..2257790) 1 NC_008358.1 hypothetical protein 2257790 4289422 HNE_2172 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760869.1 2257608 R 228405 CDS YP_760870.1 114799735 4288019 complement(2257787..2258923) 1 NC_008358.1 identified by similarity to GB:AAK24889.1; match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein 2258923 4288019 HNE_2173 Hyphomonas neptunium ATCC 15444 PepSY-associated TM helix domain-containing protein YP_760870.1 2257787 R 228405 CDS YP_760871.1 114798388 4288380 complement(2258935..2261115) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor family protein 2261115 4288380 HNE_2174 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor family protein YP_760871.1 2258935 R 228405 CDS YP_760872.1 114797369 4287300 complement(2262534..2264033) 1 NC_008358.1 identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase 2264033 mmsA2 4287300 mmsA2 Hyphomonas neptunium ATCC 15444 methylmalonate-semialdehyde dehydrogenase YP_760872.1 2262534 R 228405 CDS YP_760873.1 114799711 4289129 complement(2264088..2265698) 1 NC_008358.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; putative symporter YidK 2265698 4289129 HNE_2177 Hyphomonas neptunium ATCC 15444 putative symporter YidK YP_760873.1 2264088 R 228405 CDS YP_760874.1 114798724 4289287 2265873..2267390 1 NC_008358.1 identified by match to protein family HMM PF00884; sulfatase family protein 2267390 4289287 HNE_2178 Hyphomonas neptunium ATCC 15444 sulfatase family protein YP_760874.1 2265873 D 228405 CDS YP_760875.1 114800451 4288193 complement(2267474..2268934) 1 NC_008358.1 identified by similarity to GB:AAS06170.1; putative lipoprotein 2268934 4288193 HNE_2179 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760875.1 2267474 R 228405 CDS YP_760876.1 114799262 4289692 complement(2269081..2271357) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2271357 4289692 HNE_2180 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_760876.1 2269081 R 228405 CDS YP_760877.1 114798245 4288938 2271561..2272391 1 NC_008358.1 identified by match to protein family HMM PF01380; SIS domain-containing protein 2272391 4288938 HNE_2181 Hyphomonas neptunium ATCC 15444 SIS domain-containing protein YP_760877.1 2271561 D 228405 CDS YP_760878.1 114797675 4287881 2272534..2274447 1 NC_008358.1 identified by similarity to SP:P42414; match to protein family HMM PF00294; kinase IolC 2274447 iolC 4287881 iolC Hyphomonas neptunium ATCC 15444 kinase IolC YP_760878.1 2272534 D 228405 CDS YP_760879.1 114798854 4287818 2274466..2276310 1 NC_008358.1 identified by similarity to GB:AAK23280.1; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; thiamine pyrophosphate-dependent enzyme IolD 2276310 iolD 4287818 iolD Hyphomonas neptunium ATCC 15444 thiamine pyrophosphate-dependent enzyme IolD YP_760879.1 2274466 D 228405 CDS YP_760880.1 114798293 4287234 2276323..2277231 1 NC_008358.1 identified by similarity to SP:P42416; match to protein family HMM PF01261; 2-keto-myo-inositol dehydratase 2277231 iolE 4287234 iolE Hyphomonas neptunium ATCC 15444 2-keto-myo-inositol dehydratase YP_760880.1 2276323 D 228405 CDS YP_760881.1 114797478 4288423 2277224..2278024 1 NC_008358.1 identified by similarity to SP:P42413; match to protein family HMM PF06845; myo-inositol catabolism protein IolB 2278024 iolB 4288423 iolB Hyphomonas neptunium ATCC 15444 myo-inositol catabolism protein IolB YP_760881.1 2277224 D 228405 CDS YP_760882.1 114799793 4289810 2278092..2279216 1 NC_008358.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding oxidoreductase 2279216 4289810 HNE_2186 Hyphomonas neptunium ATCC 15444 NAD-binding oxidoreductase YP_760882.1 2278092 D 228405 CDS YP_760883.1 114797632 4288654 2280613..2282400 1 NC_008358.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; putative outer membrane efflux protein 2282400 4288654 HNE_2187 Hyphomonas neptunium ATCC 15444 putative outer membrane efflux protein YP_760883.1 2280613 D 228405 CDS YP_760884.1 114800395 4290339 2282460..2283143 1 NC_008358.1 identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387; DNA-binding heavy metal response regulator 2283143 4290339 HNE_2188 Hyphomonas neptunium ATCC 15444 DNA-binding heavy metal response regulator YP_760884.1 2282460 D 228405 CDS YP_760885.1 114798801 4289151 2283140..2284495 1 NC_008358.1 identified by similarity to SP:P77485; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor histidine kinase 2284495 4289151 HNE_2189 Hyphomonas neptunium ATCC 15444 heavy metal sensor histidine kinase YP_760885.1 2283140 D 228405 CDS YP_760886.1 114797722 4289237 complement(2284598..2287774) 1 NC_008358.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 2287774 4289237 HNE_2190 Hyphomonas neptunium ATCC 15444 AcrB/AcrD/AcrF family protein YP_760886.1 2284598 R 228405 CDS YP_760887.1 114797259 4288457 complement(2287828..2288928) 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2288928 4288457 HNE_2191 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_760887.1 2287828 R 228405 CDS YP_760888.1 114799757 4288041 complement(2289126..2290040) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2290040 4288041 HNE_2192 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760888.1 2289126 R 228405 CDS YP_760889.1 114800040 4289363 2290265..2290729 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2290729 4289363 HNE_2193 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_760889.1 2290265 D 228405 CDS YP_760890.1 114798483 4288766 2290726..2291541 1 NC_008358.1 identified by similarity to GB:BAC90391.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein 2291541 4288766 HNE_2194 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760890.1 2290726 D 228405 CDS YP_760891.1 114797925 4287899 complement(2291562..2292008) 1 NC_008358.1 identified by match to protein family HMM PF07681; DoxX family protein 2292008 4287899 HNE_2195 Hyphomonas neptunium ATCC 15444 DoxX family protein YP_760891.1 2291562 R 228405 CDS YP_760892.1 114799498 4288891 complement(2292141..2293235) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409; short chain dehydrogenase/reductase family oxidoreductase 2293235 4288891 HNE_2196 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760892.1 2292141 R 228405 CDS YP_760893.1 114798698 4289768 complement(2293336..2294025) 1 NC_008358.1 identified by similarity to GB:CAD47159.1; match to protein family HMM PF03692; hypothetical protein 2294025 4289768 HNE_2197 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760893.1 2293336 R 228405 CDS YP_760894.1 114799027 4287544 complement(2294035..2294508) 1 NC_008358.1 identified by similarity to GB:CAD17738.1; hypothetical protein 2294508 4287544 HNE_2198 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760894.1 2294035 R 228405 CDS YP_760895.1 114799755 4288039 complement(2294646..2295569) 1 NC_008358.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 2295569 4288039 HNE_2199 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_760895.1 2294646 R 228405 CDS YP_760896.1 114800410 4290354 2296179..2296637 1 NC_008358.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799; putative isoquinoline 1-oxidoreductase subunit alpha 2296637 4290354 HNE_2200 Hyphomonas neptunium ATCC 15444 putative isoquinoline 1-oxidoreductase subunit alpha YP_760896.1 2296179 D 228405 CDS YP_760897.1 114797647 4289041 2296615..2297337 1 NC_008358.1 hypothetical protein 2297337 4289041 HNE_2201 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760897.1 2296615 D 228405 CDS YP_760898.1 114797470 4288415 2297397..2299526 1 NC_008358.1 identified by similarity to SP:Q51698; match to protein family HMM PF01315; putative isoquinoline 1-oxidoreductase subunit beta 2299526 4288415 HNE_2202 Hyphomonas neptunium ATCC 15444 putative isoquinoline 1-oxidoreductase subunit beta YP_760898.1 2297397 D 228405 CDS YP_760899.1 114798163 4287652 complement(2299572..2300150) 1 NC_008358.1 sulfatase 2300150 4287652 HNE_2203 Hyphomonas neptunium ATCC 15444 sulfatase YP_760899.1 2299572 R 228405 CDS YP_760900.1 114798933 4287877 complement(2300264..2301304) 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 2301304 4287877 HNE_2204 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_760900.1 2300264 R 228405 CDS YP_760901.1 114799710 4289128 complement(2301362..2302186) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; short chain dehydrogenase/reductase family oxidoreductase 2302186 4289128 HNE_2205 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760901.1 2301362 R 228405 CDS YP_760902.1 114797204 4287075 2302532..2303299 1 NC_008358.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2303299 4287075 HNE_2206 Hyphomonas neptunium ATCC 15444 GntR family transcriptional regulator YP_760902.1 2302532 D 228405 CDS YP_760903.1 114798191 4288009 complement(2303327..2304622) 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 2304622 4288009 HNE_2207 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_760903.1 2303327 R 228405 CDS YP_760904.1 114799635 4290275 complement(2304653..2306332) 1 NC_008358.1 identified by match to protein family HMM PF01494; hypothetical protein 2306332 4290275 HNE_2208 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760904.1 2304653 R 228405 CDS YP_760905.1 114800415 4290359 complement(2306592..2307290) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2307290 4290359 HNE_2209 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_760905.1 2306592 R 228405 CDS YP_760906.1 114797247 4288445 2307522..2309858 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2309858 4288445 HNE_2210 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_760906.1 2307522 D 228405 CDS YP_760907.1 114798044 4289519 2309894..2311567 1 NC_008358.1 identified by match to protein family HMM PF00884; sulfatase family protein 2311567 4289519 HNE_2211 Hyphomonas neptunium ATCC 15444 sulfatase family protein YP_760907.1 2309894 D 228405 CDS YP_760908.1 114800456 4288198 2311633..2312724 1 NC_008358.1 identified by similarity to GB:AAS04729.1; hypothetical protein 2312724 4288198 HNE_2212 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760908.1 2311633 D 228405 CDS YP_760909.1 114797649 4289043 complement(2312775..2314349) 1 NC_008358.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 2314349 4289043 HNE_2213 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760909.1 2312775 R 228405 CDS YP_760910.1 114798316 4287099 complement(2314436..2314864) 1 NC_008358.1 identified by similarity to GB:AAM35763.1; hypothetical protein 2314864 4287099 HNE_2214 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760910.1 2314436 R 228405 CDS YP_760911.1 114798445 4290307 complement(2314889..2316220) 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2316220 4290307 HNE_2215 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_760911.1 2314889 R 228405 CDS YP_760912.1 114798660 4290406 2316492..2317430 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2317430 4290406 HNE_2216 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_760912.1 2316492 D 228405 CDS YP_760913.1 114798853 4287817 complement(2317501..2318346) 1 NC_008358.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 2318346 4287817 HNE_2217 Hyphomonas neptunium ATCC 15444 fumarylacetoacetate hydrolase family protein YP_760913.1 2317501 R 228405 CDS YP_760914.1 114799506 4288899 complement(2318411..2319058) 1 NC_008358.1 identified by similarity to SP:P47233; match to protein family HMM PF00903; putative biphenyl-2,3-diol 1,2-dioxygenase 2319058 4288899 HNE_2218 Hyphomonas neptunium ATCC 15444 putative biphenyl-2,3-diol 1,2-dioxygenase YP_760914.1 2318411 R 228405 CDS YP_760915.1 114799609 4289105 2319423..2320886 1 NC_008358.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 2320886 4289105 HNE_2219 Hyphomonas neptunium ATCC 15444 aldehyde dehydrogenase family protein YP_760915.1 2319423 D 228405 CDS YP_760916.1 114800399 4290343 2321028..2321780 1 NC_008358.1 identified by match to protein family HMM PF00596; class II aldolase/adducin domain-containing protein 2321780 4290343 HNE_2220 Hyphomonas neptunium ATCC 15444 class II aldolase/adducin domain-containing protein YP_760916.1 2321028 D 228405 CDS YP_760917.1 114800019 4288811 complement(2321796..2322728) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2322728 4288811 HNE_2221 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_760917.1 2321796 R 228405 CDS YP_760918.1 114798404 4289745 complement(2322946..2323839) 1 NC_008358.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 2323839 4289745 HNE_2222 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_760918.1 2322946 R 228405 CDS YP_760919.1 114799244 4288307 2324003..2325319 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2325319 4288307 HNE_2223 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_760919.1 2324003 D 228405 CDS YP_760920.1 114800020 4288812 2325531..2326322 1 NC_008358.1 identified by match to protein family HMM PF06629; MipA family protein 2326322 4288812 HNE_2224 Hyphomonas neptunium ATCC 15444 MipA family protein YP_760920.1 2325531 D 228405 CDS YP_760921.1 114797195 4287066 complement(2326743..2327714) 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 2327714 4287066 HNE_2225 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_760921.1 2326743 R 228405 CDS YP_760922.1 114798010 4290066 2327850..2328731 1 NC_008358.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 2328731 4290066 HNE_2226 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_760922.1 2327850 D 228405 CDS YP_760923.1 114797318 4287523 complement(2328883..2329374) 1 NC_008358.1 hypothetical protein 2329374 4287523 HNE_2227 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760923.1 2328883 R 228405 CDS YP_760924.1 114798645 4289904 complement(2329387..2330280) 1 NC_008358.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2330280 4289904 HNE_2228 Hyphomonas neptunium ATCC 15444 NAD-dependent epimerase/dehydratase family protein YP_760924.1 2329387 R 228405 CDS YP_760925.1 114799172 4288389 2330384..2331193 1 NC_008358.1 identified by similarity to GB:CAE27922.1; putative transcriptional regulator 2331193 4288389 HNE_2229 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator YP_760925.1 2330384 D 228405 CDS YP_760926.1 114799955 4290110 complement(2331874..2332653) 1 NC_008358.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase 2332653 cobA 4290110 cobA Hyphomonas neptunium ATCC 15444 uroporphyrin-III C-methyltransferase YP_760926.1 2331874 R 228405 CDS YP_760927.1 114800210 4288984 complement(2332650..2333861) 1 NC_008358.1 identified by similarity to GB:AAK22594.1; putative lipoprotein 2333861 4288984 HNE_2231 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_760927.1 2332650 R 228405 CDS YP_760928.1 114797910 4287260 complement(2334064..2335206) 1 NC_008358.1 identified by similarity to SP:P38043; putative nitrate transporter 2335206 4287260 HNE_2232 Hyphomonas neptunium ATCC 15444 putative nitrate transporter YP_760928.1 2334064 R 228405 CDS YP_760929.1 114799661 4288683 complement(2335203..2335949) 1 NC_008358.1 identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator NasT 2335949 nasT 4288683 nasT Hyphomonas neptunium ATCC 15444 response regulator NasT YP_760929.1 2335203 R 228405 CDS YP_760930.1 114800413 4290357 2336181..2338652 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H] large subunit 2338652 nirB 4290357 nirB Hyphomonas neptunium ATCC 15444 nitrite reductase [NAD(P)H] large subunit YP_760930.1 2336181 D 228405 CDS YP_760931.1 114797238 4287344 2338649..2338996 1 NC_008358.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378; nitrite reductase [NAD(P)H] small subunit 2338996 nirD 4287344 nirD Hyphomonas neptunium ATCC 15444 nitrite reductase [NAD(P)H] small subunit YP_760931.1 2338649 D 228405 CDS YP_760932.1 114797947 4289559 2339011..2339853 1 NC_008358.1 identified by match to protein family HMM PF01226; formate/nitrite transporter 2339853 fnt 4289559 fnt Hyphomonas neptunium ATCC 15444 formate/nitrite transporter YP_760932.1 2339011 D 228405 CDS YP_760933.1 114798196 4288014 2339859..2341583 1 NC_008358.1 identified by match to protein family HMM PF00069; match to protein family HMM PF00481; carbohydrate kinase 2341583 4288014 HNE_2237 Hyphomonas neptunium ATCC 15444 carbohydrate kinase YP_760933.1 2339859 D 228405 CDS YP_760934.1 114798183 4288001 complement(2342080..2342184) 1 NC_008358.1 hypothetical protein 2342184 4288001 HNE_2239 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760934.1 2342080 R 228405 CDS YP_760935.1 114797199 4287070 complement(2342174..2342869) 1 NC_008358.1 hypothetical protein 2342869 4287070 HNE_2240 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760935.1 2342174 R 228405 CDS YP_760936.1 114800524 4288869 complement(2342950..2344371) 1 NC_008358.1 identified by match to protein family HMM PF02706; putative chain length determinant protein 2344371 4288869 HNE_2241 Hyphomonas neptunium ATCC 15444 putative chain length determinant protein YP_760936.1 2342950 R 228405 CDS YP_760937.1 114799572 4288557 2344554..2345501 1 NC_008358.1 identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 2345501 4288557 HNE_2242 Hyphomonas neptunium ATCC 15444 2OG-Fe(II) oxygenase YP_760937.1 2344554 D 228405 CDS YP_760938.1 114797797 4288061 2345591..2346727 1 NC_008358.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; aminotransferase 2346727 4288061 HNE_2243 Hyphomonas neptunium ATCC 15444 aminotransferase YP_760938.1 2345591 D 228405 CDS YP_760939.1 114800349 4289283 complement(2346810..2348351) 1 NC_008358.1 identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 2348351 pepA 4289283 pepA Hyphomonas neptunium ATCC 15444 cytosol aminopeptidase YP_760939.1 2346810 R 228405 CDS YP_760940.1 114799358 4288128 complement(2348467..2349099) 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 2349099 4288128 HNE_2245 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_760940.1 2348467 R 228405 CDS YP_760941.1 114799032 4290510 complement(2349106..2349903) 1 NC_008358.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2349903 thiG 4290510 thiG Hyphomonas neptunium ATCC 15444 thiazole synthase YP_760941.1 2349106 R 228405 CDS YP_760942.1 114798481 4288764 complement(2350028..2350240) 1 NC_008358.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2350240 thiS 4288764 thiS Hyphomonas neptunium ATCC 15444 thiamine biosynthesis protein ThiS YP_760942.1 2350028 R 228405 CDS YP_760943.1 114797900 4288088 2350304..2350747 1 NC_008358.1 identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088; 3-dehydroquinate dehydratase 2350747 aroQ 4288088 aroQ Hyphomonas neptunium ATCC 15444 3-dehydroquinate dehydratase YP_760943.1 2350304 D 228405 CDS YP_760944.1 114797700 4289350 2350750..2351220 1 NC_008358.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase biotin carboxyl carrier protein 2351220 accB 4289350 accB Hyphomonas neptunium ATCC 15444 acetyl-CoA carboxylase biotin carboxyl carrier protein YP_760944.1 2350750 D 228405 CDS YP_760945.1 114798573 4289503 2351222..2352595 1 NC_008358.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase biotin carboxylase 2352595 accC 4289503 accC Hyphomonas neptunium ATCC 15444 acetyl-CoA carboxylase biotin carboxylase YP_760945.1 2351222 D 228405 CDS YP_760946.1 114797414 4287680 2352653..2353429 1 NC_008358.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2353429 aat 4287680 aat Hyphomonas neptunium ATCC 15444 leucyl/phenylalanyl-tRNA--protein transferase YP_760946.1 2352653 D 228405 CDS YP_760947.1 114799292 4289017 complement(2353273..2353827) 1 NC_008358.1 hypothetical protein 2353827 4289017 HNE_2252 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760947.1 2353273 R 228405 CDS YP_760948.1 114797425 4287162 complement(2353824..2354381) 1 NC_008358.1 identified by match to protein family HMM PF02470; hypothetical protein 2354381 4287162 HNE_2253 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760948.1 2353824 R 228405 CDS YP_760949.1 114798194 4288012 complement(2354374..2354766) 1 NC_008358.1 identified by match to protein family HMM PF05071; putative NADH:ubiquinone oxidoreductase 2354766 4288012 HNE_2254 Hyphomonas neptunium ATCC 15444 putative NADH:ubiquinone oxidoreductase YP_760949.1 2354374 R 228405 CDS YP_760950.1 114799028 4287545 2354987..2357239 1 NC_008358.1 ribonucleoside reductase-like protein 2357239 4287545 HNE_2255 Hyphomonas neptunium ATCC 15444 ribonucleoside reductase-like protein YP_760950.1 2354987 D 228405 CDS YP_760951.1 114799805 4289822 2357402..2358139 1 NC_008358.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 2358139 4289822 HNE_2256 Hyphomonas neptunium ATCC 15444 pentapeptide repeat-containing protein YP_760951.1 2357402 D 228405 CDS YP_760952.1 114800235 4287470 complement(2358217..2360046) 1 NC_008358.1 identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase 2360046 aspS 4287470 aspS Hyphomonas neptunium ATCC 15444 aspartyl-tRNA synthetase YP_760952.1 2358217 R 228405 CDS YP_760953.1 114797633 4288655 2360145..2361311 1 NC_008358.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 2361311 rnd 4288655 rnd Hyphomonas neptunium ATCC 15444 ribonuclease D YP_760953.1 2360145 D 228405 CDS YP_760954.1 114800396 4290340 complement(2361319..2362806) 1 NC_008358.1 identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 2362806 4290340 HNE_2259 Hyphomonas neptunium ATCC 15444 Ppx/GppA family phosphatase YP_760954.1 2361319 R 228405 CDS YP_760955.1 114799243 4288306 complement(2362803..2364980) 1 NC_008358.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2364980 ppk 4288306 ppk Hyphomonas neptunium ATCC 15444 polyphosphate kinase YP_760955.1 2362803 R 228405 CDS YP_760956.1 114798512 4290316 complement(2365009..2365740) 1 NC_008358.1 identified by similarity to GB:BAB53627.1; hypothetical protein 2365740 4290316 HNE_2261 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760956.1 2365009 R 228405 CDS YP_760957.1 114800481 4289434 complement(2365737..2366756) 1 NC_008358.1 hypothetical protein 2366756 4289434 HNE_2262 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760957.1 2365737 R 228405 CDS YP_760958.1 114798932 4287876 2366903..2367931 1 NC_008358.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase 2367931 purM 4287876 purM Hyphomonas neptunium ATCC 15444 phosphoribosylformylglycinamidine cyclo-ligase YP_760958.1 2366903 D 228405 CDS YP_760959.1 114797986 4289307 2367928..2368512 1 NC_008358.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 2368512 purN 4289307 purN Hyphomonas neptunium ATCC 15444 phosphoribosylglycinamide formyltransferase YP_760959.1 2367928 D 228405 CDS YP_760960.1 114798803 4289153 2368620..2368934 1 NC_008358.1 identified by similarity to GB:AAN30499.1; hypothetical protein 2368934 4289153 HNE_2265 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760960.1 2368620 D 228405 CDS YP_760961.1 114798815 4289165 2368931..2369962 1 NC_008358.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 2369962 4289165 HNE_2266 Hyphomonas neptunium ATCC 15444 zinc-binding dehydrogenase family oxidoreductase YP_760961.1 2368931 D 228405 CDS YP_760962.1 114799837 4290145 complement(2369969..2370394) 1 NC_008358.1 hypothetical protein 2370394 4290145 HNE_2267 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760962.1 2369969 R 228405 CDS YP_760963.1 114797737 4288274 complement(2370394..2370741) 1 NC_008358.1 hypothetical protein 2370741 4288274 HNE_2268 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760963.1 2370394 R 228405 CDS YP_760964.1 114798716 4290444 complement(2371007..2371429) 1 NC_008358.1 identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase 2371429 ndk 4290444 ndk Hyphomonas neptunium ATCC 15444 nucleoside diphosphate kinase YP_760964.1 2371007 R 228405 CDS YP_760965.1 114799351 4288121 2371581..2371916 1 NC_008358.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; hypothetical protein 2371916 4288121 HNE_2270 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760965.1 2371581 D 228405 CDS YP_760966.1 114797382 4287078 2372236..2372688 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2372688 4287078 HNE_2271 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_760966.1 2372236 D 228405 CDS YP_760967.1 114798143 4290376 complement(2372760..2373230) 1 NC_008358.1 identified by match to protein family HMM PF04364; putative DNA polymerase III chi subunit 2373230 4290376 HNE_2272 Hyphomonas neptunium ATCC 15444 putative DNA polymerase III chi subunit YP_760967.1 2372760 R 228405 CDS YP_760968.1 114798964 4287421 complement(2373332..2374798) 1 NC_008358.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789; M17 family peptidase 2374798 4287421 HNE_2273 Hyphomonas neptunium ATCC 15444 M17 family peptidase YP_760968.1 2373332 R 228405 CDS YP_760969.1 114799726 4289144 2374920..2376062 1 NC_008358.1 identified by match to protein family HMM PF03739; putative permease 2376062 4289144 HNE_2274 Hyphomonas neptunium ATCC 15444 putative permease YP_760969.1 2374920 D 228405 CDS YP_760970.1 114797396 4287092 2376062..2377183 1 NC_008358.1 identified by match to protein family HMM PF03739; YjgP/YjgQ permease 2377183 4287092 HNE_2275 Hyphomonas neptunium ATCC 15444 YjgP/YjgQ permease YP_760970.1 2376062 D 228405 CDS YP_760971.1 114799315 4287324 2377254..2379833 1 NC_008358.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2379833 topA 4287324 topA Hyphomonas neptunium ATCC 15444 DNA topoisomerase I YP_760971.1 2377254 D 228405 CDS YP_760972.1 114797090 4287371 2379899..2380237 1 NC_008358.1 hypothetical protein 2380237 4287371 HNE_2277 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760972.1 2379899 D 228405 CDS YP_760973.1 114798135 4287603 complement(2380257..2380616) 1 NC_008358.1 hypothetical protein 2380616 4287603 HNE_2278 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760973.1 2380257 R 228405 CDS YP_760974.1 114799106 4289205 2380303..2380662 1 NC_008358.1 hypothetical protein 2380662 4289205 HNE_2279 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760974.1 2380303 D 228405 CDS YP_760975.1 114800052 4289375 2380722..2383016 1 NC_008358.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 2383016 rnr 4289375 rnr Hyphomonas neptunium ATCC 15444 ribonuclease R YP_760975.1 2380722 D 228405 CDS YP_760976.1 114797540 4287375 2383121..2383837 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 2383837 4287375 HNE_2281 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_760976.1 2383121 D 228405 CDS YP_760977.1 114798587 4290490 2383994..2384161 1 NC_008358.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2384161 rpmG 4290490 rpmG Hyphomonas neptunium ATCC 15444 50S ribosomal protein L33 YP_760977.1 2383994 D 228405 CDS YP_760978.1 114799591 4289087 complement(2384225..2385451) 1 NC_008358.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator transporter 2385451 4289087 HNE_2283 Hyphomonas neptunium ATCC 15444 major facilitator transporter YP_760978.1 2384225 R 228405 CDS YP_760979.1 114798852 4287816 complement(2385513..2386880) 1 NC_008358.1 identified by similarity to GB:AAA87378.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator PleD 2386880 pleD 4287816 pleD Hyphomonas neptunium ATCC 15444 response regulator PleD YP_760979.1 2385513 R 228405 CDS YP_760980.1 114799980 4290195 complement(2386877..2387272) 1 NC_008358.1 identified by similarity to PDB:1M5T_A; match to protein family HMM PF00072; cell division response regulator DivK 2387272 4290195 HNE_2285 Hyphomonas neptunium ATCC 15444 cell division response regulator DivK YP_760980.1 2386877 R 228405 CDS YP_760981.1 114798874 4289730 2387408..2388682 1 NC_008358.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2388682 4289730 HNE_2286 Hyphomonas neptunium ATCC 15444 DNA polymerase IV YP_760981.1 2387408 D 228405 CDS YP_760982.1 114798769 4289834 2388738..2389199 1 NC_008358.1 identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP 2389199 4289834 HNE_2287 Hyphomonas neptunium ATCC 15444 putative endoribonuclease L-PSP YP_760982.1 2388738 D 228405 CDS YP_760983.1 114797187 4287058 2389208..2389942 1 NC_008358.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 2389942 4287058 HNE_2288 Hyphomonas neptunium ATCC 15444 glycerophosphoryl diester phosphodiesterase family protein YP_760983.1 2389208 D 228405 CDS YP_760984.1 114799871 4287453 2389954..2391114 1 NC_008358.1 identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339; hypothetical protein 2391114 4287453 HNE_2289 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760984.1 2389954 D 228405 CDS YP_760985.1 114799198 4289953 2391123..2391557 1 NC_008358.1 identified by match to protein family HMM PF01230; histidine triad family protein 2391557 4289953 HNE_2290 Hyphomonas neptunium ATCC 15444 histidine triad family protein YP_760985.1 2391123 D 228405 CDS YP_760986.1 114798220 4288601 complement(2391615..2393123) 1 NC_008358.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 2393123 gatB 4288601 gatB Hyphomonas neptunium ATCC 15444 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_760986.1 2391615 R 228405 CDS YP_760987.1 114800360 4288723 complement(2393216..2393755) 1 NC_008358.1 hypothetical protein 2393755 4288723 HNE_2292 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760987.1 2393216 R 228405 CDS YP_760988.1 114799311 4287320 complement(2393715..2395187) 1 NC_008358.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 2395187 gatA 4287320 gatA Hyphomonas neptunium ATCC 15444 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_760988.1 2393715 R 228405 CDS YP_760989.1 114798765 4289830 2395231..2395758 1 NC_008358.1 hypothetical protein 2395758 4289830 HNE_2294 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760989.1 2395231 D 228405 CDS YP_760990.1 114797783 4289627 2395813..2396196 1 NC_008358.1 identified by match to protein family HMM PF00856; SET domain-containing protein 2396196 4289627 HNE_2295 Hyphomonas neptunium ATCC 15444 SET domain-containing protein YP_760990.1 2395813 D 228405 CDS YP_760991.1 114799439 4289655 2396245..2397384 1 NC_008358.1 zinc-binding dehydrogenase family oxidoreductase 2397384 4289655 HNE_2296 Hyphomonas neptunium ATCC 15444 zinc-binding dehydrogenase family oxidoreductase YP_760991.1 2396245 D 228405 CDS YP_760992.1 114797865 4287136 2397501..2397746 1 NC_008358.1 hypothetical protein 2397746 4287136 HNE_2298 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760992.1 2397501 D 228405 CDS YP_760993.1 114798687 4289756 complement(2397558..2397686) 1 NC_008358.1 hypothetical protein 2397686 4289756 HNE_2297 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760993.1 2397558 R 228405 CDS YP_760994.1 114800240 4287475 complement(2397803..2398090) 1 NC_008358.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2398090 gatC 4287475 gatC Hyphomonas neptunium ATCC 15444 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_760994.1 2397803 R 228405 CDS YP_760995.1 114799411 4289548 2398166..2398621 1 NC_008358.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 2398621 4289548 HNE_2300 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_760995.1 2398166 D 228405 CDS YP_760996.1 114797332 4289410 2398618..2399544 1 NC_008358.1 identified by match to protein family HMM PF03547; auxin efflux carrier family protein 2399544 4289410 HNE_2301 Hyphomonas neptunium ATCC 15444 auxin efflux carrier family protein YP_760996.1 2398618 D 228405 CDS YP_760997.1 114800183 4290027 2399600..2400547 1 NC_008358.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; aspartate carbamoyltransferase 2400547 pyrB 4290027 pyrB Hyphomonas neptunium ATCC 15444 aspartate carbamoyltransferase YP_760997.1 2399600 D 228405 CDS YP_760998.1 114798896 4287587 2400544..2401824 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; putative dihydroorotase 2401824 4287587 HNE_2303 Hyphomonas neptunium ATCC 15444 putative dihydroorotase YP_760998.1 2400544 D 228405 CDS YP_760999.1 114799781 4289798 2401828..2403303 1 NC_008358.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2403303 4289798 HNE_2304 Hyphomonas neptunium ATCC 15444 MATE efflux family protein YP_760999.1 2401828 D 228405 CDS YP_761000.1 114798590 4290493 2403384..2403785 1 NC_008358.1 identified by similarity to GB:AAM39700.1; match to protein family HMM TIGR02096; hypothetical protein 2403785 4290493 HNE_2305 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761000.1 2403384 D 228405 CDS YP_761001.1 114797263 4288461 2403764..2404363 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2404363 4288461 HNE_2306 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761001.1 2403764 D 228405 CDS YP_761002.1 114798019 4290075 2404423..2406087 1 NC_008358.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M20/M25/M40 family peptidase 2406087 4290075 HNE_2307 Hyphomonas neptunium ATCC 15444 M20/M25/M40 family peptidase YP_761002.1 2404423 D 228405 CDS YP_761003.1 114799617 4290257 2406268..2407815 1 NC_008358.1 identified by match to protein family HMM PF00501; AMP-binding protein 2407815 4290257 HNE_2308 Hyphomonas neptunium ATCC 15444 AMP-binding protein YP_761003.1 2406268 D 228405 CDS YP_761004.1 114800431 4288173 complement(2407964..2408917) 1 NC_008358.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 2408917 glpX 4288173 glpX Hyphomonas neptunium ATCC 15444 fructose 1,6-bisphosphatase II YP_761004.1 2407964 R 228405 CDS YP_761005.1 114797674 4287880 complement(2408970..2410253) 1 NC_008358.1 identified by match to protein family HMM PF00742; match to protein family HMM PF01113; match to protein family HMM PF01842; match to protein family HMM PF03447; homoserine dehydrogenase 2410253 hom 4287880 hom Hyphomonas neptunium ATCC 15444 homoserine dehydrogenase YP_761005.1 2408970 R 228405 CDS YP_761006.1 114798447 4290309 complement(2410768..2411982) 1 NC_008358.1 identified by match to protein family HMM PF00155; classes I and II aminotransferase 2411982 4290309 HNE_2311 Hyphomonas neptunium ATCC 15444 classes I and II aminotransferase YP_761006.1 2410768 R 228405 CDS YP_761007.1 114797962 4289574 complement(2411990..2412409) 1 NC_008358.1 putative lipoprotein 2412409 4289574 HNE_2312 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761007.1 2411990 R 228405 CDS YP_761008.1 114799177 4288394 2412480..2414312 1 NC_008358.1 identified by similarity to SP:P52070; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838; PHA/PHB synthase family protein 2414312 4288394 HNE_2313 Hyphomonas neptunium ATCC 15444 PHA/PHB synthase family protein YP_761008.1 2412480 D 228405 CDS YP_761009.1 114800501 4289454 complement(2414341..2415276) 1 NC_008358.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 2415276 argC 4289454 argC Hyphomonas neptunium ATCC 15444 N-acetyl-gamma-glutamyl-phosphate reductase YP_761009.1 2414341 R 228405 CDS YP_761010.1 114800252 4287487 complement(2415362..2415844) 1 NC_008358.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2415844 rpsI 4287487 rpsI Hyphomonas neptunium ATCC 15444 30S ribosomal protein S9 YP_761010.1 2415362 R 228405 CDS YP_761011.1 114797444 4288564 complement(2415852..2416316) 1 NC_008358.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2416316 rplM 4288564 rplM Hyphomonas neptunium ATCC 15444 50S ribosomal protein L13 YP_761011.1 2415852 R 228405 CDS YP_761012.1 114797290 4289214 2416534..2417319 1 NC_008358.1 hypothetical protein 2417319 4289214 HNE_2317 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761012.1 2416534 D 228405 CDS YP_761013.1 114800338 4289272 complement(2417303..2418358) 1 NC_008358.1 identified by match to protein family HMM PF02628; cytochrome c oxidase assembly protein 2418358 4289272 HNE_2318 Hyphomonas neptunium ATCC 15444 cytochrome c oxidase assembly protein YP_761013.1 2417303 R 228405 CDS YP_761014.1 114798793 4287776 2418373..2418663 1 NC_008358.1 hypothetical protein 2418663 4287776 HNE_2319 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761014.1 2418373 D 228405 CDS YP_761015.1 114799297 4289022 complement(2418981..2419568) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2419568 4289022 HNE_2320 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761015.1 2418981 R 228405 CDS YP_761016.1 114798989 4288265 2419779..2421032 1 NC_008358.1 identified by similarity to SP:P38942; putative 4-hydroxybutyrate coenzyme A transferase 2421032 4288265 HNE_2321 Hyphomonas neptunium ATCC 15444 putative 4-hydroxybutyrate coenzyme A transferase YP_761016.1 2419779 D 228405 CDS YP_761017.1 114799493 4289184 complement(2421091..2422029) 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne5, transposase 2422029 4289184 HNE_2322 Hyphomonas neptunium ATCC 15444 ISHne5, transposase YP_761017.1 2421091 R 228405 CDS YP_761018.1 114797462 4288407 complement(2422353..2423522) 1 NC_008358.1 identified by match to protein family HMM PF02515; CAIB/BAIF family protein 2423522 4288407 HNE_2323 Hyphomonas neptunium ATCC 15444 CAIB/BAIF family protein YP_761018.1 2422353 R 228405 CDS YP_761019.1 114798214 4287838 complement(2423535..2423936) 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 2423936 4287838 HNE_2324 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761019.1 2423535 R 228405 CDS YP_761020.1 114799189 4289944 2424101..2425561 1 NC_008358.1 identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase 2425561 gabD 4289944 gabD Hyphomonas neptunium ATCC 15444 succinate-semialdehyde dehydrogenase YP_761020.1 2424101 D 228405 CDS YP_761021.1 114797938 4287912 complement(2425571..2426353) 1 NC_008358.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator 2426353 4287912 HNE_2326 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_761021.1 2425571 R 228405 CDS YP_761022.1 114798869 4289725 complement(2426533..2427258) 1 NC_008358.1 hypothetical protein 2427258 4289725 HNE_2327 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761022.1 2426533 R 228405 CDS YP_761023.1 114798295 4287236 complement(2427315..2430548) 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07676; amidohydrolase family protein 2430548 4287236 HNE_2328 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_761023.1 2427315 R 228405 CDS YP_761024.1 114797335 4289413 complement(2430629..2432803) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; outer membrane receptor (OMR) family protein 2432803 4289413 HNE_2329 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761024.1 2430629 R 228405 CDS YP_761025.1 114800312 4287957 2433047..2434246 1 NC_008358.1 identified by match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein 2434246 4287957 HNE_2330 Hyphomonas neptunium ATCC 15444 PepSY-associated TM helix domain-containing protein YP_761025.1 2433047 D 228405 CDS YP_761026.1 114799294 4289019 2434306..2435265 1 NC_008358.1 identified by match to protein family HMM PF07859; alpha/beta fold family hydrolase 2435265 4289019 HNE_2331 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761026.1 2434306 D 228405 CDS YP_761027.1 114798709 4290437 2435262..2435834 1 NC_008358.1 hypothetical protein 2435834 4290437 HNE_2332 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761027.1 2435262 D 228405 CDS YP_761028.1 114799705 4289123 2435856..2437466 1 NC_008358.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236; 1-pyrroline-5-carboxylate dehydrogenase 2437466 pruA 4289123 pruA Hyphomonas neptunium ATCC 15444 1-pyrroline-5-carboxylate dehydrogenase YP_761028.1 2435856 D 228405 CDS YP_761029.1 114798937 4289636 2437466..2438887 1 NC_008358.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein 2438887 4289636 HNE_2334 Hyphomonas neptunium ATCC 15444 sodium/alanine symporter family protein YP_761029.1 2437466 D 228405 CDS YP_761030.1 114800328 4289262 complement(2439072..2440484) 1 NC_008358.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 2440484 4289262 HNE_2335 Hyphomonas neptunium ATCC 15444 aldehyde dehydrogenase family protein YP_761030.1 2439072 R 228405 CDS YP_761031.1 114799578 4289074 complement(2441015..2441818) 1 NC_008358.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2441818 4289074 HNE_2336 Hyphomonas neptunium ATCC 15444 Ser/Thr protein phosphatase family protein YP_761031.1 2441015 R 228405 CDS YP_761032.1 114799260 4289690 complement(2441815..2442660) 1 NC_008358.1 hypothetical protein 2442660 4289690 HNE_2337 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761032.1 2441815 R 228405 CDS YP_761033.1 114800505 4289458 complement(2442664..2442936) 1 NC_008358.1 hypothetical protein 2442936 4289458 HNE_2338 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761033.1 2442664 R 228405 CDS YP_761034.1 114797856 4287126 complement(2443047..2444651) 1 NC_008358.1 identified by match to protein family HMM PF07568; sensor histidine kinase 2444651 4287126 HNE_2339 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_761034.1 2443047 R 228405 CDS YP_761035.1 114798823 4287553 complement(2444720..2445325) 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 2445325 4287553 HNE_2340 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_761035.1 2444720 R 228405 CDS YP_761036.1 114797486 4289701 2445307..2445606 1 NC_008358.1 hypothetical protein 2445606 4289701 HNE_2342 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761036.1 2445307 D 228405 CDS YP_761037.1 114798824 4287554 complement(2445322..2445531) 1 NC_008358.1 hypothetical protein 2445531 4287554 HNE_2341 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761037.1 2445322 R 228405 CDS YP_761038.1 114800003 4288795 complement(2445552..2445677) 1 NC_008358.1 hypothetical protein 2445677 4288795 HNE_2343 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761038.1 2445552 R 228405 CDS YP_761039.1 114798202 4287826 2445725..2446513 1 NC_008358.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 2446513 4287826 HNE_2344 Hyphomonas neptunium ATCC 15444 two-component response regulator YP_761039.1 2445725 D 228405 CDS YP_761040.1 114797451 4288571 2446580..2446936 1 NC_008358.1 identified by similarity to GB:AAN30562.1; match to protein family HMM PF05957; hypothetical protein 2446936 4288571 HNE_2345 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761040.1 2446580 D 228405 CDS YP_761041.1 114797998 4289319 2446939..2447373 1 NC_008358.1 hypothetical protein 2447373 4289319 HNE_2346 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761041.1 2446939 D 228405 CDS YP_761042.1 114797876 4288666 2447399..2449246 1 NC_008358.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 2449246 4288666 HNE_2347 Hyphomonas neptunium ATCC 15444 TrkA domain-containing protein YP_761042.1 2447399 D 228405 CDS YP_761043.1 114798430 4288169 2449278..2449517 1 NC_008358.1 identified by match to protein family HMM PF07043; hypothetical protein 2449517 4288169 HNE_2348 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761043.1 2449278 D 228405 CDS YP_761044.1 114798122 4287590 2449673..2449909 1 NC_008358.1 identified by match to protein family HMM PF05532; CsbD-like protein 2449909 4287590 HNE_2349 Hyphomonas neptunium ATCC 15444 CsbD-like protein YP_761044.1 2449673 D 228405 CDS YP_761045.1 114800429 4288171 complement(2450042..2451220) 1 NC_008358.1 identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229; putative sensory box sensor histidine kinase 2451220 4288171 HNE_2350 Hyphomonas neptunium ATCC 15444 putative sensory box sensor histidine kinase YP_761045.1 2450042 R 228405 CDS YP_761046.1 114800117 4290000 complement(2451504..2451890) 1 NC_008358.1 identified by similarity to SP:P40679; regulatory protein 2451890 4290000 HNE_2351 Hyphomonas neptunium ATCC 15444 regulatory protein YP_761046.1 2451504 R 228405 CDS YP_761047.1 114797163 4287622 complement(2452108..2452590) 1 NC_008358.1 identified by match to protein family HMM PF01638; hypothetical protein 2452590 4287622 HNE_2352 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761047.1 2452108 R 228405 CDS YP_761048.1 114798493 4287746 2452659..2453417 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2453417 4287746 HNE_2353 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761048.1 2452659 D 228405 CDS YP_761049.1 114799117 4289912 2453417..2454013 1 NC_008358.1 identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase 2454013 4289912 HNE_2354 Hyphomonas neptunium ATCC 15444 putative 2-hydroxychromene-2-carboxylate isomerase YP_761049.1 2453417 D 228405 CDS YP_761050.1 114799950 4290105 2454207..2456594 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2456594 4290105 HNE_2355 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761050.1 2454207 D 228405 CDS YP_761051.1 114797241 4287347 2456641..2457585 1 NC_008358.1 identified by similarity to GB:AAQ58180.1; match to protein family HMM PF01925; hypothetical protein 2457585 4287347 HNE_2356 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761051.1 2456641 D 228405 CDS YP_761052.1 114797469 4288414 2457587..2458741 1 NC_008358.1 identified by match to protein family HMM PF00155; classes I and II aminotransferase 2458741 4288414 HNE_2357 Hyphomonas neptunium ATCC 15444 classes I and II aminotransferase YP_761052.1 2457587 D 228405 CDS YP_761053.1 114799330 4290164 2458920..2460029 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254; diguanylate cyclase 2460029 4290164 HNE_2358 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_761053.1 2458920 D 228405 CDS YP_761054.1 114800331 4289265 complement(2460054..2460431) 1 NC_008358.1 hypothetical protein 2460431 4289265 HNE_2359 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761054.1 2460054 R 228405 CDS YP_761055.1 114797770 4288228 2460571..2460918 1 NC_008358.1 identified by match to protein family HMM PF03413; peptidase domain-containing protein 2460918 4288228 HNE_2360 Hyphomonas neptunium ATCC 15444 peptidase domain-containing protein YP_761055.1 2460571 D 228405 CDS YP_761056.1 114797742 4288279 2460918..2461580 1 NC_008358.1 identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2461580 4288279 HNE_2361 Hyphomonas neptunium ATCC 15444 DNA-binding response regulator YP_761056.1 2460918 D 228405 CDS YP_761057.1 114798979 4288255 2461577..2462899 1 NC_008358.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2462899 4288255 HNE_2362 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_761057.1 2461577 D 228405 CDS YP_761058.1 114798731 4289294 complement(2462877..2463470) 1 NC_008358.1 identified by similarity to PIR:H86766; hypothetical protein 2463470 4289294 HNE_2363 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761058.1 2462877 R 228405 CDS YP_761059.1 114799987 4290202 complement(2463467..2463967) 1 NC_008358.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2463967 folK 4290202 folK Hyphomonas neptunium ATCC 15444 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_761059.1 2463467 R 228405 CDS YP_761060.1 114800304 4287949 complement(2463960..2464325) 1 NC_008358.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 2464325 folB 4287949 folB Hyphomonas neptunium ATCC 15444 dihydroneopterin aldolase YP_761060.1 2463960 R 228405 CDS YP_761061.1 114797314 4287519 complement(2464315..2465148) 1 NC_008358.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2465148 folP 4287519 folP Hyphomonas neptunium ATCC 15444 dihydropteroate synthase YP_761061.1 2464315 R 228405 CDS YP_761062.1 114797299 4289223 complement(2465141..2465968) 1 NC_008358.1 identified by match to protein family HMM PF01063; class IV aminotransferase 2465968 4289223 HNE_2367 Hyphomonas neptunium ATCC 15444 class IV aminotransferase YP_761062.1 2465141 R 228405 CDS YP_761063.1 114798283 4287224 complement(2465965..2466549) 1 NC_008358.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566; 4-amino-4-deoxychorismate synthase, glutamine amidotransferase subunit 2466549 pabA 4287224 pabA Hyphomonas neptunium ATCC 15444 4-amino-4-deoxychorismate synthase, glutamine amidotransferase subunit YP_761063.1 2465965 R 228405 CDS YP_761064.1 114799322 4287331 complement(2466546..2467904) 1 NC_008358.1 identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; 4-amino-4-deoxychorismate synthase, aminodeoxychorismate synthase subunit 2467904 pabB 4287331 pabB Hyphomonas neptunium ATCC 15444 4-amino-4-deoxychorismate synthase, aminodeoxychorismate synthase subunit YP_761064.1 2466546 R 228405 CDS YP_761065.1 114798628 4289887 2468059..2468400 1 NC_008358.1 hypothetical protein 2468400 4289887 HNE_2370 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761065.1 2468059 D 228405 CDS YP_761066.1 114800528 4288873 complement(2468379..2468726) 1 NC_008358.1 hypothetical protein 2468726 4288873 HNE_2371 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761066.1 2468379 R 228405 CDS YP_761067.1 114798025 4287180 2468562..2469785 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2469785 4287180 HNE_2372 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_761067.1 2468562 D 228405 CDS YP_761068.1 114798897 4288483 2469798..2472878 1 NC_008358.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2472878 4288483 HNE_2373 Hyphomonas neptunium ATCC 15444 CzcA family heavy metal efflux protein YP_761068.1 2469798 D 228405 CDS YP_761069.1 114800137 4290470 complement(2472875..2473627) 1 NC_008358.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 2473627 4290470 HNE_2374 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761069.1 2472875 R 228405 CDS YP_761070.1 114800190 4290034 complement(2473672..2474067) 1 NC_008358.1 identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP 2474067 4290034 HNE_2375 Hyphomonas neptunium ATCC 15444 putative endoribonuclease L-PSP YP_761070.1 2473672 R 228405 CDS YP_761071.1 114800071 4289394 complement(2474226..2476394) 1 NC_008358.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 2476394 mdoH 4289394 mdoH Hyphomonas neptunium ATCC 15444 glucosyltransferase MdoH YP_761071.1 2474226 R 228405 CDS YP_761072.1 114799443 4289659 complement(2476391..2478043) 1 NC_008358.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 2478043 mdoG 4289659 mdoG Hyphomonas neptunium ATCC 15444 glucan biosynthesis protein G YP_761072.1 2476391 R 228405 CDS YP_761073.1 114798705 4290433 complement(2478532..2481054) 1 NC_008358.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 2481054 secD2 4290433 secD2 Hyphomonas neptunium ATCC 15444 bifunctional preprotein translocase subunit SecD/SecF YP_761073.1 2478532 R 228405 CDS YP_761074.1 114797064 4287032 complement(2481354..2481740) 1 NC_008358.1 hypothetical protein 2481740 4287032 HNE_2379 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761074.1 2481354 R 228405 CDS YP_761075.1 114800475 4289428 2482007..2483002 1 NC_008358.1 putative 3-oxoacyl-(acyl-carrier-protein) synthase III 2483002 4289428 HNE_2380 Hyphomonas neptunium ATCC 15444 putative 3-oxoacyl-(acyl-carrier-protein) synthase III YP_761075.1 2482007 D 228405 CDS YP_761076.1 114799097 4289196 2482999..2483967 1 NC_008358.1 identified by similarity to SP:P75821; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2483967 4289196 HNE_2381 Hyphomonas neptunium ATCC 15444 NAD-dependent epimerase/dehydratase family protein YP_761076.1 2482999 D 228405 CDS YP_761077.1 114798475 4288758 2483964..2484740 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 2484740 4288758 HNE_2382 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase superfamily protein YP_761077.1 2483964 D 228405 CDS YP_761078.1 114797513 4287643 2484737..2486002 1 NC_008358.1 identified by match to protein family HMM TIGR02304; hypothetical protein 2486002 4287643 HNE_2383 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761078.1 2484737 D 228405 CDS YP_761079.1 114800378 4288741 2485999..2487261 1 NC_008358.1 identified by similarity to GB:AAK31353.1; putative glycosyl transferase 2487261 4288741 HNE_2384 Hyphomonas neptunium ATCC 15444 putative glycosyl transferase YP_761079.1 2485999 D 228405 CDS YP_761080.1 114799409 4289546 complement(2487218..2487718) 1 NC_008358.1 hypothetical protein 2487718 4289546 HNE_2385 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761080.1 2487218 R 228405 CDS YP_761081.1 114797230 4287336 complement(2487917..2490232) 1 NC_008358.1 identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein 2490232 4287336 HNE_2386 Hyphomonas neptunium ATCC 15444 S1 RNA-binding domain-containing protein YP_761081.1 2487917 R 228405 CDS YP_761082.1 114797843 4288787 complement(2490358..2490843) 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2490843 4288787 HNE_2387 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_761082.1 2490358 R 228405 CDS YP_761083.1 114798764 4289829 2490966..2491400 1 NC_008358.1 identified by similarity to SP:O68390; match to protein family HMM PF02566; organic hydroperoxide resistance protein 2491400 ohr 4289829 ohr Hyphomonas neptunium ATCC 15444 organic hydroperoxide resistance protein YP_761083.1 2490966 D 228405 CDS YP_761084.1 114797743 4288280 2491975..2494302 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2494302 4288280 HNE_2389 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761084.1 2491975 D 228405 CDS YP_761085.1 114799861 4287443 2494358..2495767 1 NC_008358.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 2495767 4287443 HNE_2390 Hyphomonas neptunium ATCC 15444 major facilitator transporter YP_761085.1 2494358 D 228405 CDS YP_761086.1 114797348 4287202 complement(2495836..2496621) 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2496621 4287202 HNE_2391 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761086.1 2495836 R 228405 CDS YP_761087.1 114798335 4288618 complement(2496632..2497672) 1 NC_008358.1 identified by similarity to GB:AAR37535.1; hypothetical protein 2497672 4288618 HNE_2392 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761087.1 2496632 R 228405 CDS YP_761088.1 114799323 4290157 complement(2497774..2498496) 1 NC_008358.1 identified by similarity to SP:P22773; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; putative histidine utilization repressor 2498496 4290157 HNE_2393 Hyphomonas neptunium ATCC 15444 putative histidine utilization repressor YP_761088.1 2497774 R 228405 CDS YP_761089.1 114798152 4290385 complement(2498561..2499931) 1 NC_008358.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 2499931 hutF 4290385 hutF Hyphomonas neptunium ATCC 15444 N-formimino-L-glutamate deiminase YP_761089.1 2498561 R 228405 CDS YP_761090.1 114798638 4289897 2500009..2501229 1 NC_008358.1 identified by similarity to SP:P42084; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; imidazolonepropionase 2501229 hutI 4289897 hutI Hyphomonas neptunium ATCC 15444 imidazolonepropionase YP_761090.1 2500009 D 228405 CDS YP_761091.1 114797854 4287124 2501226..2502767 1 NC_008358.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2502767 hutH 4287124 hutH Hyphomonas neptunium ATCC 15444 histidine ammonia-lyase YP_761091.1 2501226 D 228405 CDS YP_761092.1 114800063 4289386 2502764..2503582 1 NC_008358.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017; N-formylglutamate amidohydrolase 2503582 hutG 4289386 hutG Hyphomonas neptunium ATCC 15444 N-formylglutamate amidohydrolase YP_761092.1 2502764 D 228405 CDS YP_761093.1 114799077 4287731 2503594..2505261 1 NC_008358.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2505261 hutU 4287731 hutU Hyphomonas neptunium ATCC 15444 urocanate hydratase YP_761093.1 2503594 D 228405 CDS YP_761094.1 114798121 4287589 complement(2505275..2505823) 1 NC_008358.1 identified by match to protein family HMM PF08212; lipocalin-like lipoprotein 2505823 4287589 HNE_2399 Hyphomonas neptunium ATCC 15444 lipocalin-like lipoprotein YP_761094.1 2505275 R 228405 CDS YP_761095.1 114797146 4288363 complement(2505855..2506670) 1 NC_008358.1 identified by similarity to SP:P77486; match to protein family HMM PF06629; putative MltA-interacting protein MipA 2506670 4288363 HNE_2400 Hyphomonas neptunium ATCC 15444 putative MltA-interacting protein MipA YP_761095.1 2505855 R 228405 CDS YP_761096.1 114797519 4289480 complement(2506767..2507420) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2507420 4289480 HNE_2401 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761096.1 2506767 R 228405 CDS YP_761097.1 114800498 4289451 2507644..2508018 1 NC_008358.1 cytochrome c family protein 2508018 4289451 HNE_2402 Hyphomonas neptunium ATCC 15444 cytochrome c family protein YP_761097.1 2507644 D 228405 CDS YP_761098.1 114799138 4287792 complement(2508033..2509397) 1 NC_008358.1 putative lipoprotein 2509397 4287792 HNE_2403 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761098.1 2508033 R 228405 CDS YP_761099.1 114797985 4289306 2509623..2510801 1 NC_008358.1 identified by match to protein family HMM PF00529; membrane fusion protein family protein 2510801 4289306 HNE_2404 Hyphomonas neptunium ATCC 15444 membrane fusion protein family protein YP_761099.1 2509623 D 228405 CDS YP_761100.1 114800362 4288725 2510876..2512444 1 NC_008358.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2512444 4288725 HNE_2405 Hyphomonas neptunium ATCC 15444 EmrB/QacA family drug resistance transporter YP_761100.1 2510876 D 228405 CDS YP_761101.1 114797748 4288285 2512470..2513159 1 NC_008358.1 identified by similarity to GB:AAK25385.1; match to protein family HMM PF05175; hypothetical protein 2513159 4288285 HNE_2406 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761101.1 2512470 D 228405 CDS YP_761102.1 114797542 4287377 2513557..2513691 1 NC_008358.1 hypothetical protein 2513691 4287377 HNE_2407 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761102.1 2513557 D 228405 CDS YP_761103.1 114797306 4287511 2513938..2516421 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2516421 4287511 HNE_2408 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761103.1 2513938 D 228405 CDS YP_761104.1 114800324 4289258 2516447..2517472 1 NC_008358.1 identified by similarity to SP:P09394; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2517472 glpQ 4289258 glpQ Hyphomonas neptunium ATCC 15444 glycerophosphoryl diester phosphodiesterase YP_761104.1 2516447 D 228405 CDS YP_761105.1 114799301 4289026 2517614..2517910 1 NC_008358.1 hypothetical protein 2517910 4289026 HNE_2410 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761105.1 2517614 D 228405 CDS YP_761106.1 114799846 4290154 2517907..2518161 1 NC_008358.1 hypothetical protein 2518161 4290154 HNE_2411 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761106.1 2517907 D 228405 CDS YP_761107.1 114797339 4289417 2518175..2519872 1 NC_008358.1 identified by match to protein family HMM PF07969; amidohydrolase family protein 2519872 4289417 HNE_2412 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_761107.1 2518175 D 228405 CDS YP_761108.1 114799595 4289091 2519869..2520831 1 NC_008358.1 identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561; putative epoxide hydrolase 2520831 4289091 HNE_2413 Hyphomonas neptunium ATCC 15444 putative epoxide hydrolase YP_761108.1 2519869 D 228405 CDS YP_761109.1 114797874 4288664 2520850..2522370 1 NC_008358.1 identified by similarity to GB:CAD17846.1; match to protein family HMM PF00890; match to protein family HMM PF01266; hypothetical protein 2522370 4288664 HNE_2414 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761109.1 2520850 D 228405 CDS YP_761110.1 114797867 4288657 2522408..2523133 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2523133 4288657 HNE_2415 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761110.1 2522408 D 228405 CDS YP_761111.1 114800200 4288974 complement(2523138..2524370) 1 NC_008358.1 identified by similarity to SP:P29011; match to protein family HMM PF01266; D-amino acid dehydrogenase small subunit 2524370 dadA 4288974 dadA Hyphomonas neptunium ATCC 15444 D-amino acid dehydrogenase small subunit YP_761111.1 2523138 R 228405 CDS YP_761112.1 114799438 4289342 complement(2524367..2525557) 1 NC_008358.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 2525557 alr2 4289342 alr2 Hyphomonas neptunium ATCC 15444 alanine racemase YP_761112.1 2524367 R 228405 CDS YP_761113.1 114797354 4287208 complement(2525547..2526824) 1 NC_008358.1 identified by similarity to SP:P23893; match to protein family HMM PF00202; glutamate-1-semialdehyde-2,1-aminomutase 2526824 hemL 4287208 hemL Hyphomonas neptunium ATCC 15444 glutamate-1-semialdehyde-2,1-aminomutase YP_761113.1 2525547 R 228405 CDS YP_761114.1 114797283 4290547 2526914..2527861 1 NC_008358.1 identified by match to protein family HMM PF00294; PfkB family kinase 2527861 4290547 HNE_2419 Hyphomonas neptunium ATCC 15444 PfkB family kinase YP_761114.1 2526914 D 228405 CDS YP_761115.1 114797608 4288320 2527861..2528514 1 NC_008358.1 identified by match to protein family HMM PF00596; putative L-ribulose-5-phosphate 4-epimerase 2528514 4288320 HNE_2420 Hyphomonas neptunium ATCC 15444 putative L-ribulose-5-phosphate 4-epimerase YP_761115.1 2527861 D 228405 CDS YP_761116.1 114800178 4290022 2528595..2530133 1 NC_008358.1 identified by similarity to GB:BAB47763.1; hypothetical protein 2530133 4290022 HNE_2421 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761116.1 2528595 D 228405 CDS YP_761117.1 114799546 4288531 complement(2530235..2531659) 1 NC_008358.1 hypothetical protein 2531659 4288531 HNE_2422 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761117.1 2530235 R 228405 CDS YP_761118.1 114797717 4289232 complement(2531661..2533913) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2533913 4289232 HNE_2423 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761118.1 2531661 R 228405 CDS YP_761119.1 114798892 4287583 2533951..2534733 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2534733 4287583 HNE_2424 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761119.1 2533951 D 228405 CDS YP_761120.1 114798631 4289890 complement(2534749..2534952) 1 NC_008358.1 identified by similarity to GB:BAC51041.1; hypothetical protein 2534952 4289890 HNE_2425 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761120.1 2534749 R 228405 CDS YP_761121.1 114798133 4287601 complement(2534975..2535433) 1 NC_008358.1 identified by match to protein family HMM PF00085; putative thioredoxin 2535433 4287601 HNE_2426 Hyphomonas neptunium ATCC 15444 putative thioredoxin YP_761121.1 2534975 R 228405 CDS YP_761122.1 114800223 4288997 complement(2535457..2536728) 1 NC_008358.1 identified by similarity to GB:CAA66112.1; match to protein family HMM PF07992; sulfide-quinone oxidoreductase 2536728 sqr 4288997 sqr Hyphomonas neptunium ATCC 15444 sulfide-quinone oxidoreductase YP_761122.1 2535457 R 228405 CDS YP_761123.1 114799448 4289664 2536868..2537227 1 NC_008358.1 hypothetical protein 2537227 4289664 HNE_2428 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761123.1 2536868 D 228405 CDS YP_761124.1 114799470 4290051 2537214..2538206 1 NC_008358.1 identified by similarity to SP:P37973; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2538206 4290051 HNE_2429 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_761124.1 2537214 D 228405 CDS YP_761125.1 114798247 4288940 2538212..2541496 1 NC_008358.1 identified by match to protein family HMM PF00873; RND efflux transporter 2541496 4288940 HNE_2430 Hyphomonas neptunium ATCC 15444 RND efflux transporter YP_761125.1 2538212 D 228405 CDS YP_761126.1 114797496 4289711 2541477..2541800 1 NC_008358.1 identified by similarity to SP:P28267; match to protein family HMM PF01022; putative transcriptional regulator NolR 2541800 4289711 HNE_2431 Hyphomonas neptunium ATCC 15444 putative transcriptional regulator NolR YP_761126.1 2541477 D 228405 CDS YP_761127.1 114799799 4289816 2541876..2543516 1 NC_008358.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator transporter 2543516 4289816 HNE_2432 Hyphomonas neptunium ATCC 15444 major facilitator transporter YP_761127.1 2541876 D 228405 CDS YP_761128.1 114799729 4289147 2543615..2544595 1 NC_008358.1 identified by similarity to SP:Q08257; match to protein family HMM PF00107; putative quinone oxidoreductase 2544595 4289147 HNE_2433 Hyphomonas neptunium ATCC 15444 putative quinone oxidoreductase YP_761128.1 2543615 D 228405 CDS YP_761129.1 114798242 4288935 2544749..2545312 1 NC_008358.1 hypothetical protein 2545312 4288935 HNE_2434 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761129.1 2544749 D 228405 CDS YP_761130.1 114798127 4287595 2545312..2547105 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2547105 4287595 HNE_2435 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_761130.1 2545312 D 228405 CDS YP_761131.1 114797070 4287038 complement(2547114..2549393) 1 NC_008358.1 hypothetical protein 2549393 4287038 HNE_2436 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761131.1 2547114 R 228405 CDS YP_761132.1 114800554 4289056 complement(2549390..2550313) 1 NC_008358.1 hypothetical protein 2550313 4289056 HNE_2437 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761132.1 2549390 R 228405 CDS YP_761133.1 114798900 4288486 complement(2550446..2550997) 1 NC_008358.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 2550997 4288486 HNE_2438 Hyphomonas neptunium ATCC 15444 NADPH-dependent FMN reductase YP_761133.1 2550446 R 228405 CDS YP_761134.1 114798496 4287749 complement(2551071..2551907) 1 NC_008358.1 identified by similarity to GB:AAK23325.1; hypothetical protein 2551907 4287749 HNE_2439 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761134.1 2551071 R 228405 CDS YP_761135.1 114797769 4288227 2551993..2552586 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2552586 4288227 HNE_2440 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761135.1 2551993 D 228405 CDS YP_761136.1 114799144 4287798 complement(2552632..2553888) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 2553888 4287798 HNE_2441 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761136.1 2552632 R 228405 CDS YP_761137.1 114799270 4288585 complement(2553904..2555028) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase family protein 2555028 4288585 HNE_2442 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761137.1 2553904 R 228405 CDS YP_761138.1 114798363 4290420 complement(2555165..2555962) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2555962 4290420 HNE_2443 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_761138.1 2555165 R 228405 CDS YP_761139.1 114797870 4288660 2556177..2557874 1 NC_008358.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase 2557874 fcs4 4288660 fcs4 Hyphomonas neptunium ATCC 15444 feruloyl-CoA synthetase YP_761139.1 2556177 D 228405 CDS YP_761140.1 114799927 4290081 complement(2557871..2559349) 1 NC_008358.1 identified by match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein 2559349 4290081 HNE_2445 Hyphomonas neptunium ATCC 15444 sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein YP_761140.1 2557871 R 228405 CDS YP_761141.1 114799008 4288440 complement(2559259..2561724) 1 NC_008358.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691; glycosyl hydrolase family protein 2561724 4288440 HNE_2446 Hyphomonas neptunium ATCC 15444 glycosyl hydrolase family protein YP_761141.1 2559259 R 228405 CDS YP_761142.1 114798426 4288165 2561854..2562564 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2562564 4288165 HNE_2447 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761142.1 2561854 D 228405 CDS YP_761143.1 114797445 4288565 2562670..2565006 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2565006 4288565 HNE_2448 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761143.1 2562670 D 228405 CDS YP_761144.1 114799529 4288922 2565115..2566494 1 NC_008358.1 identified by match to protein family HMM PF00884; sulfatase family protein 2566494 4288922 HNE_2449 Hyphomonas neptunium ATCC 15444 sulfatase family protein YP_761144.1 2565115 D 228405 CDS YP_761145.1 114798011 4290067 2566629..2567819 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 2567819 4290067 HNE_2450 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_761145.1 2566629 D 228405 CDS YP_761146.1 114800516 4288861 2568080..2571001 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782; outer membrane receptor (OMR) family protein 2571001 4288861 HNE_2451 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761146.1 2568080 D 228405 CDS YP_761147.1 114797559 4287277 2571012..2572898 1 NC_008358.1 identified by similarity to GB:BAB51192.1; match to protein family HMM PF05787; hypothetical protein 2572898 4287277 HNE_2452 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761147.1 2571012 D 228405 CDS YP_761148.1 114798333 4287116 2573015..2573368 1 NC_008358.1 hypothetical protein 2573368 4287116 HNE_2453 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761148.1 2573015 D 228405 CDS YP_761149.1 114799158 4287010 2573381..2574274 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family protein 2574274 4287010 HNE_2454 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_761149.1 2573381 D 228405 CDS YP_761150.1 114799899 4290228 complement(2574343..2575878) 1 NC_008358.1 identified by match to protein family HMM PF00245; alkaline phosphatase 2575878 4290228 HNE_2455 Hyphomonas neptunium ATCC 15444 alkaline phosphatase YP_761150.1 2574343 R 228405 CDS YP_761151.1 114797781 4289625 complement(2576003..2578636) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2578636 4289625 HNE_2456 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761151.1 2576003 R 228405 CDS YP_761152.1 114797738 4288275 2578838..2579623 1 NC_008358.1 identified by similarity to SP:P15302; match to protein family HMM PF00702; HAD superfamily hydrolase 2579623 4288275 HNE_2457 Hyphomonas neptunium ATCC 15444 HAD superfamily hydrolase YP_761152.1 2578838 D 228405 CDS YP_761153.1 114798767 4289832 complement(2579610..2580443) 1 NC_008358.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 2580443 4289832 HNE_2458 Hyphomonas neptunium ATCC 15444 RpiR family transcriptional regulator YP_761153.1 2579610 R 228405 CDS YP_761154.1 114798712 4290440 2580711..2581634 1 NC_008358.1 identified by match to protein family HMM TIGR01098; phosphonate ABC transporter periplasmic phosphonate-binding protein 2581634 phnD 4290440 phnD Hyphomonas neptunium ATCC 15444 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_761154.1 2580711 D 228405 CDS YP_761155.1 114799281 4288596 2581634..2582419 1 NC_008358.1 identified by similarity to SP:P16677; match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein 2582419 phnC 4288596 phnC Hyphomonas neptunium ATCC 15444 phosphonate ABC transporter ATP-binding protein YP_761155.1 2581634 D 228405 CDS YP_761156.1 114800354 4288717 2582416..2583438 1 NC_008358.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease 2583438 phnE 4288717 phnE Hyphomonas neptunium ATCC 15444 phosphonate ABC transporter permease YP_761156.1 2582416 D 228405 CDS YP_761157.1 114799229 4288292 complement(2583495..2584736) 1 NC_008358.1 identified by similarity to GB:CAB65715.2; match to protein family HMM PF00999; putative transporter 2584736 4288292 HNE_2462 Hyphomonas neptunium ATCC 15444 putative transporter YP_761157.1 2583495 R 228405 CDS YP_761158.1 114800474 4289427 complement(2584980..2586956) 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 2586956 4289427 HNE_2463 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_761158.1 2584980 R 228405 CDS YP_761159.1 114797479 4288424 2587251..2587985 1 NC_008358.1 hypothetical protein 2587985 4288424 HNE_2464 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761159.1 2587251 D 228405 CDS YP_761160.1 114798472 4288755 2587921..2589486 1 NC_008358.1 identified by similarity to GB:BAB51085.1; hypothetical protein 2589486 4288755 HNE_2465 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761160.1 2587921 D 228405 CDS YP_761161.1 114798985 4288261 2589483..2592746 1 NC_008358.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; putative DNA polymerase III subunit alpha 2592746 4288261 HNE_2466 Hyphomonas neptunium ATCC 15444 putative DNA polymerase III subunit alpha YP_761161.1 2589483 D 228405 CDS YP_761162.1 114800048 4289371 2592883..2594955 1 NC_008358.1 identified by match to protein family HMM PF00199; match to protein family HMM PF06628; catalase HPII 2594955 katE 4289371 katE Hyphomonas neptunium ATCC 15444 catalase HPII YP_761162.1 2592883 D 228405 CDS YP_761163.1 114798951 4289650 2594991..2596220 1 NC_008358.1 identified by match to protein family HMM PF01266; putative oxidoreductase 2596220 4289650 HNE_2468 Hyphomonas neptunium ATCC 15444 putative oxidoreductase YP_761163.1 2594991 D 228405 CDS YP_761164.1 114799727 4289145 complement(2596517..2596792) 1 NC_008358.1 identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU 2596792 hup2 4289145 hup2 Hyphomonas neptunium ATCC 15444 DNA-binding protein HU YP_761164.1 2596517 R 228405 CDS YP_761165.1 114800551 4289053 complement(2597382..2598428) 1 NC_008358.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 2598428 4289053 HNE_2470 Hyphomonas neptunium ATCC 15444 zinc-binding dehydrogenase family oxidoreductase YP_761165.1 2597382 R 228405 CDS YP_761166.1 114797500 4287629 2599002..2599937 1 NC_008358.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 2599937 4287629 HNE_2471 Hyphomonas neptunium ATCC 15444 LuxR family transcriptional regulator YP_761166.1 2599002 D 228405 CDS YP_761167.1 114798470 4287705 2600134..2600910 1 NC_008358.1 hypothetical protein 2600910 4287705 HNE_2472 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761167.1 2600134 D 228405 CDS YP_761168.1 114797273 4290537 2600922..2601476 1 NC_008358.1 hypothetical protein 2601476 4290537 HNE_2473 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761168.1 2600922 D 228405 CDS YP_761169.1 114797954 4289566 2601481..2605245 1 NC_008358.1 hypothetical protein 2605245 4289566 HNE_2474 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761169.1 2601481 D 228405 CDS YP_761170.1 114797189 4287060 complement(2605398..2605787) 1 NC_008358.1 hypothetical protein 2605787 4287060 HNE_2475 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761170.1 2605398 R 228405 CDS YP_761171.1 114799430 4289334 complement(2606183..2606977) 1 NC_008358.1 identified by similarity to GB:AAF99434.1; putative sulfur oxidation diheme cytochrome SoxA 2606977 4289334 HNE_2476 Hyphomonas neptunium ATCC 15444 putative sulfur oxidation diheme cytochrome SoxA YP_761171.1 2606183 R 228405 CDS YP_761172.1 114798637 4289896 complement(2606974..2607294) 1 NC_008358.1 identified by similarity to GB:CAB94381.1; putative sulfur oxidation protein SoxZ 2607294 4289896 HNE_2477 Hyphomonas neptunium ATCC 15444 putative sulfur oxidation protein SoxZ YP_761172.1 2606974 R 228405 CDS YP_761173.1 114797464 4288409 complement(2607309..2607782) 1 NC_008358.1 with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY 2607782 soxY 4288409 soxY Hyphomonas neptunium ATCC 15444 sulfur oxidation protein SoxY YP_761173.1 2607309 R 228405 CDS YP_761174.1 114800211 4288985 complement(2607790..2608245) 1 NC_008358.1 identified by similarity to GB:AAF99431.1; putative sulfur oxidation cytochrome SoxX 2608245 4288985 HNE_2479 Hyphomonas neptunium ATCC 15444 putative sulfur oxidation cytochrome SoxX YP_761174.1 2607790 R 228405 CDS YP_761175.1 114799362 4288833 complement(2608242..2609519) 1 NC_008358.1 identified by similarity to SP:Q06530; match to protein family HMM PF07992; match to protein family HMM TIGR01409; putative sulfide dehydrogenase, flavoprotein subunit 2609519 4288833 HNE_2480 Hyphomonas neptunium ATCC 15444 putative sulfide dehydrogenase, flavoprotein subunit YP_761175.1 2608242 R 228405 CDS YP_761176.1 114798408 4289749 complement(2609516..2609857) 1 NC_008358.1 identified by similarity to SP:P20958; putative sulfide dehydrogenase, cytochrome subunit 2609857 4289749 HNE_2481 Hyphomonas neptunium ATCC 15444 putative sulfide dehydrogenase, cytochrome subunit YP_761176.1 2609516 R 228405 CDS YP_761177.1 114798763 4289828 complement(2609860..2612046) 1 NC_008358.1 identified by similarity to SP:Q51698; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409; putative isoquinoline 1-oxidoreductase subunit beta 2612046 4289828 HNE_2482 Hyphomonas neptunium ATCC 15444 putative isoquinoline 1-oxidoreductase subunit beta YP_761177.1 2609860 R 228405 CDS YP_761178.1 114799494 4289185 complement(2612062..2612517) 1 NC_008358.1 identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799; putative isoquinoline 1-oxidoreductase subunit alpha 2612517 4289185 HNE_2483 Hyphomonas neptunium ATCC 15444 putative isoquinoline 1-oxidoreductase subunit alpha YP_761178.1 2612062 R 228405 CDS YP_761179.1 114800492 4289445 complement(2612907..2613314) 1 NC_008358.1 hypothetical protein 2613314 4289445 HNE_2484 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761179.1 2612907 R 228405 CDS YP_761180.1 114798434 4290296 complement(2613435..2613953) 1 NC_008358.1 selenoprotein 2613953 4290296 HNE_2485 Hyphomonas neptunium ATCC 15444 selenoprotein YP_761180.1 2613435 R 228405 CDS YP_761181.1 114800123 4290456 complement(2614010..2615599) 1 NC_008358.1 identified by similarity to GB:BAC81190.1; thiol-disulfide oxidoreductase domain-containing protein 2615599 4290456 HNE_2486 Hyphomonas neptunium ATCC 15444 thiol-disulfide oxidoreductase domain-containing protein YP_761181.1 2614010 R 228405 CDS YP_761182.1 114798311 4289475 complement(2615805..2617676) 1 NC_008358.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 2617676 selB 4289475 selB Hyphomonas neptunium ATCC 15444 selenocysteine-specific translation elongation factor YP_761182.1 2615805 R 228405 CDS YP_761183.1 114797888 4288076 complement(2617673..2619064) 1 NC_008358.1 identified by match to protein family HMM PF01053; match to protein family HMM PF03841; match to protein family HMM TIGR00474; L-seryl-tRNA selenium transferase 2619064 selA 4288076 selA Hyphomonas neptunium ATCC 15444 L-seryl-tRNA selenium transferase YP_761183.1 2617673 R 228405 CDS YP_761184.1 114800156 4290489 2619226..2621412 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase / selenide, water dikinase 2621412 4290489 HNE_2490 Hyphomonas neptunium ATCC 15444 pyridine nucleotide-disulfide oxidoreductase / selenide, water dikinase YP_761184.1 2619226 D 228405 CDS YP_761185.1 114799852 4287434 complement(2621405..2622487) 1 NC_008358.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2622487 4287434 HNE_2491 Hyphomonas neptunium ATCC 15444 tRNA 2-selenouridine synthase YP_761185.1 2621405 R 228405 CDS YP_761186.1 114800394 4290338 complement(2622942..2623235) 1 NC_008358.1 hypothetical protein 2623235 4290338 HNE_2492 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761186.1 2622942 R 228405 CDS YP_761187.1 114800408 4290352 2623264..2623383 1 NC_008358.1 hypothetical protein 2623383 4290352 HNE_2493 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761187.1 2623264 D 228405 CDS YP_761188.1 114799581 4289077 complement(2623409..2624287) 1 NC_008358.1 hypothetical protein 2624287 4289077 HNE_2494 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761188.1 2623409 R 228405 CDS YP_761189.1 114798542 4288107 complement(2624256..2626670) 1 NC_008358.1 identified by match to protein family HMM PF00577; fimbrial usher protein 2626670 4288107 HNE_2495 Hyphomonas neptunium ATCC 15444 fimbrial usher protein YP_761189.1 2624256 R 228405 CDS YP_761190.1 114800023 4288815 complement(2626697..2627437) 1 NC_008358.1 identified by similarity to GB:AAN82651.1; putative fimbrial assembly protein 2627437 4288815 HNE_2496 Hyphomonas neptunium ATCC 15444 putative fimbrial assembly protein YP_761190.1 2626697 R 228405 CDS YP_761191.1 114798345 4288628 complement(2627512..2627991) 1 NC_008358.1 hypothetical protein 2627991 4288628 HNE_2497 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761191.1 2627512 R 228405 CDS YP_761192.1 114797123 4287151 complement(2628118..2628210) 1 NC_008358.1 hypothetical protein 2628210 4287151 HNE_2498 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761192.1 2628118 R 228405 CDS YP_761193.1 114800385 4288748 2628795..2628905 1 NC_008358.1 hypothetical protein 2628905 4288748 HNE_2499 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761193.1 2628795 D 228405 CDS YP_761194.1 114799601 4289097 complement(2629327..2630712) 1 NC_008358.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 2630712 4289097 HNE_2500 Hyphomonas neptunium ATCC 15444 aldehyde dehydrogenase family protein YP_761194.1 2629327 R 228405 CDS YP_761195.1 114799618 4290258 complement(2630752..2632407) 1 NC_008358.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 2632407 4290258 HNE_2501 Hyphomonas neptunium ATCC 15444 acetolactate synthase YP_761195.1 2630752 R 228405 CDS YP_761196.1 114799415 4289552 2632591..2635284 1 NC_008358.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 2635284 4289552 HNE_2502 Hyphomonas neptunium ATCC 15444 LuxR family transcriptional regulator YP_761196.1 2632591 D 228405 CDS YP_761197.1 114797626 4288648 2635451..2637037 1 NC_008358.1 identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase family protein 2637037 4288648 HNE_2503 Hyphomonas neptunium ATCC 15444 hydantoinase/oxoprolinase family protein YP_761197.1 2635451 D 228405 CDS YP_761198.1 114800407 4290351 2637040..2638194 1 NC_008358.1 identified by match to protein family HMM PF06032; hypothetical protein 2638194 4290351 HNE_2504 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761198.1 2637040 D 228405 CDS YP_761199.1 114799631 4290271 2638245..2640437 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2640437 4290271 HNE_2505 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761199.1 2638245 D 228405 CDS YP_761200.1 114798942 4289641 2641198..2642781 1 NC_008358.1 identified by match to protein family HMM PF00128; glycosyl hydrolase family protein 2642781 4289641 HNE_2506 Hyphomonas neptunium ATCC 15444 glycosyl hydrolase family protein YP_761200.1 2641198 D 228405 CDS YP_761201.1 114797240 4287346 2642924..2643889 1 NC_008358.1 identified by match to protein family HMM PF01063; class IV aminotransferase 2643889 4287346 HNE_2507 Hyphomonas neptunium ATCC 15444 class IV aminotransferase YP_761201.1 2642924 D 228405 CDS YP_761202.1 114800001 4288793 complement(2643950..2644699) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2644699 4288793 HNE_2508 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761202.1 2643950 R 228405 CDS YP_761203.1 114799150 4287002 2644967..2645719 1 NC_008358.1 hypothetical protein 2645719 4287002 HNE_2509 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761203.1 2644967 D 228405 CDS YP_761204.1 114798435 4290297 complement(2646326..2646589) 1 NC_008358.1 identified by match to protein family HMM PF01258; hypothetical protein 2646589 4290297 HNE_2510 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761204.1 2646326 R 228405 CDS YP_761205.1 114800207 4288981 complement(2646955..2647659) 1 NC_008358.1 identified by similarity to GB:BAB52672.1; ISHne6, transposase 2647659 4288981 HNE_2511 Hyphomonas neptunium ATCC 15444 ISHne6, transposase YP_761205.1 2646955 R 228405 CDS YP_761206.1 114797341 4289419 complement(2648277..2652758) 1 NC_008358.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; YD repeat-/RHS repeat-containing protein 2652758 4289419 HNE_2512 Hyphomonas neptunium ATCC 15444 YD repeat-/RHS repeat-containing protein YP_761206.1 2648277 R 228405 CDS YP_761207.1 114799527 4288920 complement(2652905..2654236) 1 NC_008358.1 identified by similarity to PIR:AH2137; hypothetical protein 2654236 4288920 HNE_2513 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761207.1 2652905 R 228405 CDS YP_761208.1 114798909 4288495 2655587..2657671 1 NC_008358.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II secretion system protein 2657671 4288495 HNE_2514 Hyphomonas neptunium ATCC 15444 type II secretion system protein YP_761208.1 2655587 D 228405 CDS YP_761209.1 114797521 4289482 2657668..2658372 1 NC_008358.1 hypothetical protein 2658372 4289482 HNE_2515 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761209.1 2657668 D 228405 CDS YP_761210.1 114798670 4289851 2658362..2658817 1 NC_008358.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 2658817 gspG2 4289851 gspG2 Hyphomonas neptunium ATCC 15444 general secretion pathway protein G YP_761210.1 2658362 D 228405 CDS YP_761211.1 114799031 4287548 2658829..2660451 1 NC_008358.1 identified by match to protein family HMM PF00437; type II secretion system protein 2660451 4287548 HNE_2517 Hyphomonas neptunium ATCC 15444 type II secretion system protein YP_761211.1 2658829 D 228405 CDS YP_761212.1 114800215 4288989 2660448..2661635 1 NC_008358.1 identified by match to protein family HMM PF00482; type II secretion system protein F 2661635 4288989 HNE_2518 Hyphomonas neptunium ATCC 15444 type II secretion system protein F YP_761212.1 2660448 D 228405 CDS YP_761213.1 114797104 4287971 2661632..2662006 1 NC_008358.1 hypothetical protein 2662006 4287971 HNE_2519 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761213.1 2661632 D 228405 CDS YP_761214.1 114798074 4287854 2661996..2662319 1 NC_008358.1 hypothetical protein 2662319 4287854 HNE_2520 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761214.1 2661996 D 228405 CDS YP_761215.1 114799048 4290526 2662316..2663248 1 NC_008358.1 identified by match to protein family HMM PF05137; pilN family protein 2663248 4290526 HNE_2521 Hyphomonas neptunium ATCC 15444 pilN family protein YP_761215.1 2662316 D 228405 CDS YP_761216.1 114800412 4290356 2663245..2663796 1 NC_008358.1 hypothetical protein 2663796 4290356 HNE_2522 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761216.1 2663245 D 228405 CDS YP_761217.1 114797648 4289042 2663793..2664281 1 NC_008358.1 hypothetical protein 2664281 4289042 HNE_2523 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761217.1 2663793 D 228405 CDS YP_761218.1 114798443 4290305 complement(2664788..2665861) 1 NC_008358.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; RHS/YD repeat-containing protein 2665861 4290305 HNE_2524 Hyphomonas neptunium ATCC 15444 RHS/YD repeat-containing protein YP_761218.1 2664788 R 228405 CDS YP_761219.1 114800008 4288800 2667519..2669489 1 NC_008358.1 hypothetical protein 2669489 4288800 HNE_2525 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761219.1 2667519 D 228405 CDS YP_761220.1 114797446 4288566 2669587..2672052 1 NC_008358.1 identified by similarity to SP:Q07833; match to protein family HMM PF05593; match to protein family HMM TIGR01643; putative wall-associated protein 2672052 4288566 HNE_2526 Hyphomonas neptunium ATCC 15444 putative wall-associated protein YP_761220.1 2669587 D 228405 CDS YP_761221.1 114798171 4287660 complement(2672326..2672724) 1 NC_008358.1 hypothetical protein 2672724 4287660 HNE_2527 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761221.1 2672326 R 228405 CDS YP_761222.1 114798988 4288264 complement(2672785..2673138) 1 NC_008358.1 identified by similarity to GB:BAC46141.1; hypothetical protein 2673138 4288264 HNE_2528 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761222.1 2672785 R 228405 CDS YP_761223.1 114797437 4287174 2673229..2674806 1 NC_008358.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase 2674806 4287174 HNE_2529 Hyphomonas neptunium ATCC 15444 resolvase family site-specific recombinase YP_761223.1 2673229 D 228405 CDS YP_761224.1 114798149 4290382 2674803..2675714 1 NC_008358.1 identified by match to protein family HMM PF02195; match to protein family HMM PF07506; ParB family protein 2675714 4290382 HNE_2530 Hyphomonas neptunium ATCC 15444 ParB family protein YP_761224.1 2674803 D 228405 CDS YP_761225.1 114798659 4290405 2675711..2676625 1 NC_008358.1 identified by match to protein family HMM PF02195; match to protein family HMM PF07506; ParB family protein 2676625 4290405 HNE_2531 Hyphomonas neptunium ATCC 15444 ParB family protein YP_761225.1 2675711 D 228405 CDS YP_761226.1 114797384 4287080 complement(2676631..2681778) 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614; ATP-dependent DNA helicase domain-containing protein 2681778 4287080 HNE_2532 Hyphomonas neptunium ATCC 15444 ATP-dependent DNA helicase domain-containing protein YP_761226.1 2676631 R 228405 CDS YP_761227.1 114798868 4289724 complement(2681872..2682903) 1 NC_008358.1 hypothetical protein 2682903 4289724 HNE_2533 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761227.1 2681872 R 228405 CDS YP_761228.1 114798188 4288006 2683173..2683553 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 2683553 4288006 HNE_2534 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_761228.1 2683173 D 228405 CDS YP_761229.1 114797820 4288473 2684198..2684530 1 NC_008358.1 hypothetical protein 2684530 4288473 HNE_2536 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761229.1 2684198 D 228405 CDS YP_761230.1 114799606 4289102 complement(2686587..2687609) 1 NC_008358.1 hypothetical protein 2687609 4289102 HNE_2537 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761230.1 2686587 R 228405 CDS YP_761231.1 114798657 4290403 complement(2687558..2688124) 1 NC_008358.1 identified by match to protein family HMM PF06508; hypothetical protein 2688124 4290403 HNE_2538 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761231.1 2687558 R 228405 CDS YP_761232.1 114797622 4288644 complement(2689150..2692554) 1 NC_008358.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit 2692554 4288644 HNE_2539 Hyphomonas neptunium ATCC 15444 type I restriction-modification system, R subunit YP_761232.1 2689150 R 228405 CDS YP_761233.1 114800126 4290459 complement(2692551..2693492) 1 NC_008358.1 identified by similarity to GB:AAM05802.1; hypothetical protein 2693492 4290459 HNE_2540 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761233.1 2692551 R 228405 CDS YP_761234.1 114798271 4287251 complement(2693495..2694640) 1 NC_008358.1 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 2694640 4287251 HNE_2541 Hyphomonas neptunium ATCC 15444 type I restriction-modification system subunit S YP_761234.1 2693495 R 228405 CDS YP_761235.1 114798203 4287827 complement(2694637..2696178) 1 NC_008358.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02384; type I restriction-modification system, M subunit 2696178 4287827 HNE_2542 Hyphomonas neptunium ATCC 15444 type I restriction-modification system, M subunit YP_761235.1 2694637 R 228405 CDS YP_761236.1 114798978 4288254 complement(2696432..2696641) 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 2696641 4288254 HNE_2543 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_761236.1 2696432 R 228405 CDS YP_761237.1 114799813 4290121 2696760..2697359 1 NC_008358.1 putative lipoprotein 2697359 4290121 HNE_2544 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761237.1 2696760 D 228405 CDS YP_761238.1 114798140 4290373 2697509..2698861 1 NC_008358.1 identified by match to protein family HMM PF01555; match to protein family HMM PF02195; DNA methylase 2698861 4290373 HNE_2545 Hyphomonas neptunium ATCC 15444 DNA methylase YP_761238.1 2697509 D 228405 CDS YP_761239.1 114799253 4289683 2698858..2699253 1 NC_008358.1 hypothetical protein 2699253 4289683 HNE_2546 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761239.1 2698858 D 228405 CDS YP_761240.1 114797556 4287391 2699243..2700667 1 NC_008358.1 identified by similarity to PIR:H97760; match to protein family HMM TIGR01630; hypothetical protein 2700667 4287391 HNE_2547 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761240.1 2699243 D 228405 CDS YP_761241.1 114799894 4290223 complement(2700935..2701300) 1 NC_008358.1 identified by similarity to GB:BAD02109.1; hypothetical protein 2701300 4290223 HNE_2548 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761241.1 2700935 R 228405 CDS YP_761242.1 114798531 4288096 complement(2701302..2702693) 1 NC_008358.1 identified by match to protein family HMM PF00899; ThiF family protein 2702693 4288096 HNE_2549 Hyphomonas neptunium ATCC 15444 ThiF family protein YP_761242.1 2701302 R 228405 CDS YP_761243.1 114798489 4288772 complement(2702693..2703586) 1 NC_008358.1 hypothetical protein 2703586 4288772 HNE_2550 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761243.1 2702693 R 228405 CDS YP_761244.1 114799490 4289181 complement(2703617..2707030) 1 NC_008358.1 identified by match to protein family HMM PF00580; match to protein family HMM PF06114; UvrD/REP helicase domain-containing protein 2707030 4289181 HNE_2551 Hyphomonas neptunium ATCC 15444 UvrD/REP helicase domain-containing protein YP_761244.1 2703617 R 228405 CDS YP_761245.1 114799758 4288042 complement(2707017..2707517) 1 NC_008358.1 hypothetical protein 2707517 4288042 HNE_2552 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761245.1 2707017 R 228405 CDS YP_761246.1 114798270 4287250 complement(2707555..2708373) 1 NC_008358.1 hypothetical protein 2708373 4287250 HNE_2553 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761246.1 2707555 R 228405 CDS YP_761247.1 114798073 4287853 2709175..2709429 1 NC_008358.1 hypothetical protein 2709429 4287853 HNE_2554 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761247.1 2709175 D 228405 CDS YP_761248.1 114797764 4288222 2709453..2709830 1 NC_008358.1 identified by similarity to GB:CAD86452.1; hypothetical protein 2709830 4288222 HNE_2555 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761248.1 2709453 D 228405 CDS YP_761249.1 114800258 4287493 2709830..2711485 1 NC_008358.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase 2711485 4287493 HNE_2556 Hyphomonas neptunium ATCC 15444 resolvase family site-specific recombinase YP_761249.1 2709830 D 228405 CDS YP_761250.1 114799302 4289027 2712150..2713379 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2713379 4289027 HNE_2558 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_761250.1 2712150 D 228405 CDS YP_761251.1 114798360 4290417 2713575..2714192 1 NC_008358.1 fusion of ribosomal protein L21 and COG3743; 50S ribosomal protein L21 2714192 rplU 4290417 rplU Hyphomonas neptunium ATCC 15444 50S ribosomal protein L21 YP_761251.1 2713575 D 228405 CDS YP_761252.1 114800293 4287938 2714229..2714498 1 NC_008358.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2714498 rpmA 4287938 rpmA Hyphomonas neptunium ATCC 15444 50S ribosomal protein L27 YP_761252.1 2714229 D 228405 CDS YP_761253.1 114799714 4289132 2714644..2715174 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2715174 4289132 HNE_2561 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761253.1 2714644 D 228405 CDS YP_761254.1 114798904 4288490 2715194..2716264 1 NC_008358.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2716264 obgE 4288490 obgE Hyphomonas neptunium ATCC 15444 GTPase ObgE YP_761254.1 2715194 D 228405 CDS YP_761255.1 114798955 4287412 complement(2716377..2717135) 1 NC_008358.1 hypothetical protein 2717135 4287412 HNE_2563 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761255.1 2716377 R 228405 CDS YP_761256.1 114799610 4289106 complement(2717168..2717320) 1 NC_008358.1 hypothetical protein 2717320 4289106 HNE_2564 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761256.1 2717168 R 228405 CDS YP_761257.1 114799947 4290102 2717450..2719018 1 NC_008358.1 identified by match to protein family HMM PF00486; match to protein family HMM PF00515; match to protein family HMM PF07721; hypothetical protein 2719018 4290102 HNE_2565 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761257.1 2717450 D 228405 CDS YP_761258.1 114797640 4289034 complement(2719034..2719729) 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2719729 4289034 HNE_2566 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761258.1 2719034 R 228405 CDS YP_761259.1 114799163 4287015 2720158..2721273 1 NC_008358.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2721273 proB 4287015 proB Hyphomonas neptunium ATCC 15444 gamma-glutamyl kinase YP_761259.1 2720158 D 228405 CDS YP_761260.1 114800022 4288814 2721270..2721743 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2721743 4288814 HNE_2568 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761260.1 2721270 D 228405 CDS YP_761261.1 114797265 4290529 2721740..2723209 1 NC_008358.1 alpha-L-glutamate ligase 2723209 4290529 HNE_2569 Hyphomonas neptunium ATCC 15444 alpha-L-glutamate ligase YP_761261.1 2721740 D 228405 CDS YP_761262.1 114798001 4289322 complement(2723343..2725133) 1 NC_008358.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 2725133 vlacs 4289322 vlacs Hyphomonas neptunium ATCC 15444 long-chain-acyl-CoA synthetase YP_761262.1 2723343 R 228405 CDS YP_761263.1 114797509 4287638 2725323..2726207 1 NC_008358.1 identified by match to protein family HMM PF02551; acyl-CoA thioesterase II 2726207 4287638 HNE_2571 Hyphomonas neptunium ATCC 15444 acyl-CoA thioesterase II YP_761263.1 2725323 D 228405 CDS YP_761264.1 114798734 4289297 complement(2726276..2727292) 1 NC_008358.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2727292 4289297 HNE_2572 Hyphomonas neptunium ATCC 15444 AraC family transcriptional regulator YP_761264.1 2726276 R 228405 CDS YP_761265.1 114799345 4288115 2727727..2728035 1 NC_008358.1 identified by similarity to SP:Q02375; match to protein family HMM PF04800; putative NADH-quinone oxidoreductase 2728035 4288115 HNE_2574 Hyphomonas neptunium ATCC 15444 putative NADH-quinone oxidoreductase YP_761265.1 2727727 D 228405 CDS YP_761266.1 114800543 4288888 2728407..2729345 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 2729345 4288888 HNE_2576 Hyphomonas neptunium ATCC 15444 ISHne3, transposase YP_761266.1 2728407 D 228405 CDS YP_761267.1 114797585 4286990 2730114..2731781 1 NC_008358.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD(+) synthetase 2731781 nadE 4286990 nadE Hyphomonas neptunium ATCC 15444 glutamine-dependent NAD(+) synthetase YP_761267.1 2730114 D 228405 CDS YP_761268.1 114798519 4290323 complement(2731786..2732610) 1 NC_008358.1 putative lipoprotein 2732610 4290323 HNE_2578 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761268.1 2731786 R 228405 CDS YP_761269.1 114799057 4288956 2732741..2734078 1 NC_008358.1 identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 2734078 gltX2 4288956 gltX2 Hyphomonas neptunium ATCC 15444 glutamyl-tRNA synthetase YP_761269.1 2732741 D 228405 CDS YP_761270.1 114800080 4289963 complement(2734083..2735192) 1 NC_008358.1 putative lipoprotein 2735192 4289963 HNE_2580 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761270.1 2734083 R 228405 CDS YP_761271.1 114798956 4287413 complement(2735280..2735675) 1 NC_008358.1 identified by match to protein family HMM PF01152; hypothetical protein 2735675 4287413 HNE_2581 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761271.1 2735280 R 228405 CDS YP_761272.1 114800077 4289400 complement(2735781..2736656) 1 NC_008358.1 hypothetical protein 2736656 4289400 HNE_2582 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761272.1 2735781 R 228405 CDS YP_761273.1 114798784 4287766 2736776..2737396 1 NC_008358.1 hypothetical protein 2737396 4287766 HNE_2583 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761273.1 2736776 D 228405 CDS YP_761274.1 114797929 4287903 2737386..2739632 1 NC_008358.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; putative diguanylate cyclase 2739632 4287903 HNE_2584 Hyphomonas neptunium ATCC 15444 putative diguanylate cyclase YP_761274.1 2737386 D 228405 CDS YP_761275.1 114800525 4288870 2739752..2740234 1 NC_008358.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2740234 4288870 HNE_2585 Hyphomonas neptunium ATCC 15444 AsnC family transcriptional regulator YP_761275.1 2739752 D 228405 CDS YP_761276.1 114799569 4288554 complement(2740253..2742520) 1 NC_008358.1 identified by match to protein family HMM PF01042; match to protein family HMM PF01979; amidohydrolase 2742520 4288554 HNE_2586 Hyphomonas neptunium ATCC 15444 amidohydrolase YP_761276.1 2740253 R 228405 CDS YP_761277.1 114797518 4289479 complement(2742745..2744256) 1 NC_008358.1 identified by match to protein family HMM PF00450; serine carboxypeptidase family protein 2744256 4289479 HNE_2587 Hyphomonas neptunium ATCC 15444 serine carboxypeptidase family protein YP_761277.1 2742745 R 228405 CDS YP_761278.1 114798416 4288155 2744432..2745688 1 NC_008358.1 identified by match to protein family HMM PF00266; class V aminotransferase 2745688 4288155 HNE_2588 Hyphomonas neptunium ATCC 15444 class V aminotransferase YP_761278.1 2744432 D 228405 CDS YP_761279.1 114800108 4289991 complement(2745693..2747276) 1 NC_008358.1 identified by match to protein family HMM PF00450; serine carboxypeptidase family protein 2747276 4289991 HNE_2589 Hyphomonas neptunium ATCC 15444 serine carboxypeptidase family protein YP_761279.1 2745693 R 228405 CDS YP_761280.1 114799105 4289204 complement(2747273..2748232) 1 NC_008358.1 identified by match to protein family HMM PF01488; match to protein family HMM PF02423; ornithine cyclodeaminase/mu-crystallin family protein 2748232 4289204 HNE_2590 Hyphomonas neptunium ATCC 15444 ornithine cyclodeaminase/mu-crystallin family protein YP_761280.1 2747273 R 228405 CDS YP_761281.1 114798112 4289607 complement(2748229..2749764) 1 NC_008358.1 identified by match to protein family HMM PF00450; serine carboxypeptidase family protein 2749764 4289607 HNE_2591 Hyphomonas neptunium ATCC 15444 serine carboxypeptidase family protein YP_761281.1 2748229 R 228405 CDS YP_761282.1 114799891 4290220 complement(2749813..2752827) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2752827 4290220 HNE_2592 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761282.1 2749813 R 228405 CDS YP_761283.1 114799061 4288960 complement(2753020..2754342) 1 NC_008358.1 identified by match to protein family HMM PF00324; amino acid permease family protein 2754342 4288960 HNE_2593 Hyphomonas neptunium ATCC 15444 amino acid permease family protein YP_761283.1 2753020 R 228405 CDS YP_761284.1 114798265 4287245 complement(2754353..2755462) 1 NC_008358.1 identified by match to protein family HMM PF00155; classes I and II aminotransferase 2755462 4287245 HNE_2594 Hyphomonas neptunium ATCC 15444 classes I and II aminotransferase YP_761284.1 2754353 R 228405 CDS YP_761285.1 114797182 4287052 complement(2755568..2755687) 1 NC_008358.1 hypothetical protein 2755687 4287052 HNE_2595 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761285.1 2755568 R 228405 CDS YP_761286.1 114797930 4287904 complement(2755745..2757361) 1 NC_008358.1 putative lipoprotein 2757361 4287904 HNE_2596 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761286.1 2755745 R 228405 CDS YP_761287.1 114800437 4288179 2757583..2759352 1 NC_008358.1 putative lipoprotein 2759352 4288179 HNE_2597 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761287.1 2757583 D 228405 CDS YP_761288.1 114799487 4289178 complement(2759373..2762231) 1 NC_008358.1 identified by match to protein family HMM PF00501; AMP-binding protein 2762231 4289178 HNE_2598 Hyphomonas neptunium ATCC 15444 AMP-binding protein YP_761288.1 2759373 R 228405 CDS YP_761289.1 114798696 4289766 complement(2762591..2763055) 1 NC_008358.1 identified by match to protein family HMM PF01638; hypothetical protein 2763055 4289766 HNE_2600 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761289.1 2762591 R 228405 CDS YP_761290.1 114797567 4287285 2763315..2764325 1 NC_008358.1 identified by similarity to GB:AAK22656.1; hypothetical protein 2764325 4287285 HNE_2601 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761290.1 2763315 D 228405 CDS YP_761291.1 114800291 4287936 2764585..2765208 1 NC_008358.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 2765208 4287936 HNE_2602 Hyphomonas neptunium ATCC 15444 5-formyltetrahydrofolate cyclo-ligase YP_761291.1 2764585 D 228405 CDS YP_761292.1 114798350 4288633 2765490..2766284 1 NC_008358.1 identified by similarity to SP:P04957; match to protein family HMM PF00722; putative licheninase 2766284 4288633 HNE_2603 Hyphomonas neptunium ATCC 15444 putative licheninase YP_761292.1 2765490 D 228405 CDS YP_761293.1 114798891 4287582 complement(2766274..2766603) 1 NC_008358.1 identified by match to protein family HMM PF07345; hypothetical protein 2766603 4287582 HNE_2604 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761293.1 2766274 R 228405 CDS YP_761294.1 114798983 4288259 2766786..2767565 1 NC_008358.1 identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; phosphoribosylaminoimidazole-succinocarboxamide synthase 2767565 purC 4288259 purC Hyphomonas neptunium ATCC 15444 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_761294.1 2766786 D 228405 CDS YP_761295.1 114799324 4290158 2767565..2767807 1 NC_008358.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase PurS 2767807 purS 4290158 purS Hyphomonas neptunium ATCC 15444 phosphoribosylformylglycinamidine synthase PurS YP_761295.1 2767565 D 228405 CDS YP_761296.1 114800317 4289251 2767979..2768662 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2768662 4289251 HNE_2607 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761296.1 2767979 D 228405 CDS YP_761297.1 114797415 4287681 2768689..2769495 1 NC_008358.1 identified by similarity to GB:AAD38301.1; match to protein family HMM PF01553; acyltransferase family protein 2769495 4287681 HNE_2608 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_761297.1 2768689 D 228405 CDS YP_761298.1 114797945 4289557 2769593..2769907 1 NC_008358.1 identified by similarity to SP:P30743; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE 2769907 4289557 HNE_2609 Hyphomonas neptunium ATCC 15444 quaternary ammonium compound-resistance protein SugE YP_761298.1 2769593 D 228405 CDS YP_761299.1 114798935 4287879 2770555..2770752 1 NC_008358.1 hypothetical protein 2770752 4287879 HNE_2610 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761299.1 2770555 D 228405 CDS YP_761300.1 114797714 4289229 complement(2770755..2771243) 1 NC_008358.1 identified by similarity to GB:CAE36672.1; hypothetical protein 2771243 4289229 HNE_2611 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761300.1 2770755 R 228405 CDS YP_761301.1 114798611 4289870 complement(2771264..2771623) 1 NC_008358.1 identified by similarity to PDB:1R94_A; match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 2771623 iscA 4289870 iscA Hyphomonas neptunium ATCC 15444 iron-sulfur cluster assembly accessory protein YP_761301.1 2771264 R 228405 CDS YP_761302.1 114799313 4287322 complement(2771659..2772042) 1 NC_008358.1 identified by similarity to GB:AAN29861.1; match to protein family HMM PF01883; match to protein family HMM TIGR02945; hypothetical protein 2772042 4287322 HNE_2613 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761302.1 2771659 R 228405 CDS YP_761303.1 114800315 4289249 complement(2772051..2773274) 1 NC_008358.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS family cysteine desulfurase 2773274 4289249 HNE_2614 Hyphomonas neptunium ATCC 15444 SufS family cysteine desulfurase YP_761303.1 2772051 R 228405 CDS YP_761304.1 114797340 4289418 complement(2773279..2774484) 1 NC_008358.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD 2774484 sufD 4289418 sufD Hyphomonas neptunium ATCC 15444 FeS assembly protein SufD YP_761304.1 2773279 R 228405 CDS YP_761305.1 114797142 4288359 complement(2774502..2775263) 1 NC_008358.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC 2775263 sufC 4288359 sufC Hyphomonas neptunium ATCC 15444 FeS assembly ATPase SufC YP_761305.1 2774502 R 228405 CDS YP_761306.1 114800533 4288878 complement(2775364..2775492) 1 NC_008358.1 hypothetical protein 2775492 4288878 HNE_2617 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761306.1 2775364 R 228405 CDS YP_761307.1 114799542 4288527 complement(2775533..2776252) 1 NC_008358.1 putative lipoprotein 2776252 4288527 HNE_2618 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761307.1 2775533 R 228405 CDS YP_761308.1 114797351 4287205 complement(2776350..2777864) 1 NC_008358.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2777864 sufB 4287205 sufB Hyphomonas neptunium ATCC 15444 cysteine desulfurase activator complex subunit SufB YP_761308.1 2776350 R 228405 CDS YP_761309.1 114797524 4289485 complement(2777912..2779114) 1 NC_008358.1 identified by match to protein family HMM PF00266; class-V pyridoxal-phosphate-dependent aminotransferase 2779114 4289485 HNE_2620 Hyphomonas neptunium ATCC 15444 class-V pyridoxal-phosphate-dependent aminotransferase YP_761309.1 2777912 R 228405 CDS YP_761310.1 114798867 4289723 2779173..2779892 1 NC_008358.1 identified by similarity to GB:AAK23842.1; hypothetical protein 2779892 4289723 HNE_2621 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761310.1 2779173 D 228405 CDS YP_761311.1 114798340 4288623 2779957..2780436 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 2780436 4288623 HNE_2622 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761311.1 2779957 D 228405 CDS YP_761312.1 114798282 4287223 2780643..2781818 1 NC_008358.1 identified by match to protein family HMM PF00665; ISHne2, transposase 2781818 4287223 HNE_2623 Hyphomonas neptunium ATCC 15444 ISHne2, transposase YP_761312.1 2780643 D 228405 CDS YP_761313.1 114798565 4287409 complement(2782009..2783172) 1 NC_008358.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 2783172 anmK 4287409 anmK Hyphomonas neptunium ATCC 15444 anhydro-N-acetylmuramic acid kinase YP_761313.1 2782009 R 228405 CDS YP_761314.1 114799842 4290150 2783188..2784438 1 NC_008358.1 identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 2784438 tyrS 4290150 tyrS Hyphomonas neptunium ATCC 15444 tyrosyl-tRNA synthetase YP_761314.1 2783188 D 228405 CDS YP_761315.1 114800556 4289058 complement(2784446..2787814) 1 NC_008358.1 hypothetical protein 2787814 4289058 HNE_2626 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761315.1 2784446 R 228405 CDS YP_761316.1 114797554 4287389 2787933..2788406 1 NC_008358.1 identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 2788406 bcp 4287389 bcp Hyphomonas neptunium ATCC 15444 bacterioferritin comigratory protein YP_761316.1 2787933 D 228405 CDS YP_761317.1 114798467 4287702 2788610..2789827 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 2789827 4287702 HNE_2628 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_761317.1 2788610 D 228405 CDS YP_761318.1 114799073 4287727 2789811..2790353 1 NC_008358.1 identified by match to protein family HMM PF04519; putative lipoprotein 2790353 4287727 HNE_2629 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761318.1 2789811 D 228405 CDS YP_761319.1 114800067 4289390 complement(2790639..2792042) 1 NC_008358.1 hypothetical protein 2792042 4289390 HNE_2630 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761319.1 2790639 R 228405 CDS YP_761320.1 114797242 4287348 complement(2792178..2792783) 1 NC_008358.1 identified by match to protein family HMM TIGR01352; TonB family protein 2792783 4287348 HNE_2631 Hyphomonas neptunium ATCC 15444 TonB family protein YP_761320.1 2792178 R 228405 CDS YP_761321.1 114798118 4289613 complement(2792813..2793232) 1 NC_008358.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; putative TonB system transport protein ExbD 2793232 4289613 HNE_2632 Hyphomonas neptunium ATCC 15444 putative TonB system transport protein ExbD YP_761321.1 2792813 R 228405 CDS YP_761322.1 114798302 4289466 complement(2793243..2793659) 1 NC_008358.1 identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; putative TonB system transport protein ExbD 2793659 4289466 HNE_2633 Hyphomonas neptunium ATCC 15444 putative TonB system transport protein ExbD YP_761322.1 2793243 R 228405 CDS YP_761323.1 114799271 4288586 complement(2793659..2794168) 1 NC_008358.1 identified by similarity to GB:AAC69454.1; match to protein family HMM PF01618; putative TonB system transport protein ExbB 2794168 4288586 HNE_2634 Hyphomonas neptunium ATCC 15444 putative TonB system transport protein ExbB YP_761323.1 2793659 R 228405 CDS YP_761324.1 114799765 4288049 complement(2794204..2795598) 1 NC_008358.1 identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2795598 4288049 HNE_2635 Hyphomonas neptunium ATCC 15444 MotA/TolQ/ExbB proton channel family protein YP_761324.1 2794204 R 228405 CDS YP_761325.1 114798908 4288494 complement(2795634..2796401) 1 NC_008358.1 hypothetical protein 2796401 4288494 HNE_2636 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761325.1 2795634 R 228405 CDS YP_761326.1 114799830 4290138 2797242..2799020 1 NC_008358.1 identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 67K type 2799020 sppA 4290138 sppA Hyphomonas neptunium ATCC 15444 signal peptide peptidase SppA, 67K type YP_761326.1 2797242 D 228405 CDS YP_761327.1 114798701 4289771 2799146..2800150 1 NC_008358.1 identified by similarity to SP:O54067; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucuronate 5'-epimerase 2800150 4289771 HNE_2639 Hyphomonas neptunium ATCC 15444 UDP-glucuronate 5'-epimerase YP_761327.1 2799146 D 228405 CDS YP_761328.1 114797784 4289628 complement(2800132..2800866) 1 NC_008358.1 identified by match to protein family HMM PF00849; pseudouridine synthase family protein 2800866 4289628 HNE_2640 Hyphomonas neptunium ATCC 15444 pseudouridine synthase family protein YP_761328.1 2800132 R 228405 CDS YP_761329.1 114799267 4288582 complement(2800863..2801747) 1 NC_008358.1 identified by match to protein family HMM PF01636; phosphotransferase family protein 2801747 4288582 HNE_2641 Hyphomonas neptunium ATCC 15444 phosphotransferase family protein YP_761329.1 2800863 R 228405 CDS YP_761330.1 114800296 4287941 complement(2801740..2803050) 1 NC_008358.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 2803050 4287941 HNE_2642 Hyphomonas neptunium ATCC 15444 recombination factor protein RarA YP_761330.1 2801740 R 228405 CDS YP_761331.1 114799913 4290243 2803111..2803947 1 NC_008358.1 identified by match to protein family HMM PF02668; TauD/TfdA family dioxygenase 2803947 4290243 HNE_2643 Hyphomonas neptunium ATCC 15444 TauD/TfdA family dioxygenase YP_761331.1 2803111 D 228405 CDS YP_761332.1 114797410 4287676 complement(2804024..2805445) 1 NC_008358.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease 2805445 4287676 HNE_2644 Hyphomonas neptunium ATCC 15444 Do family protease YP_761332.1 2804024 R 228405 CDS YP_761333.1 114798092 4288240 complement(2805577..2807022) 1 NC_008358.1 major facilitator transporter 2807022 4288240 HNE_2645 Hyphomonas neptunium ATCC 15444 major facilitator transporter YP_761333.1 2805577 R 228405 CDS YP_761334.1 114798973 4287430 complement(2807061..2808284) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 2808284 4287430 HNE_2646 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761334.1 2807061 R 228405 CDS YP_761335.1 114799233 4288296 complement(2808299..2808589) 1 NC_008358.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 2808589 4288296 HNE_2647 Hyphomonas neptunium ATCC 15444 antibiotic biosynthesis monooxygenase domain-containing protein YP_761335.1 2808299 R 228405 CDS YP_761336.1 114800176 4290020 2808790..2809815 1 NC_008358.1 identified by similarity to SP:P33691; match to protein family HMM PF00535; putative glycosyl transferase ExoA 2809815 4290020 HNE_2648 Hyphomonas neptunium ATCC 15444 putative glycosyl transferase ExoA YP_761336.1 2808790 D 228405 CDS YP_761337.1 114797753 4288211 2809997..2810812 1 NC_008358.1 identified by similarity to GB:AAC46052.1; match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 2810812 4288211 HNE_2649 Hyphomonas neptunium ATCC 15444 serine/threonine protein phosphatase family protein YP_761337.1 2809997 D 228405 CDS YP_761338.1 114798711 4290439 2810878..2811465 1 NC_008358.1 identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 2811465 4290439 HNE_2650 Hyphomonas neptunium ATCC 15444 polysaccharide biosynthesis/export protein YP_761338.1 2810878 D 228405 CDS YP_761339.1 114799807 4289824 2811811..2812506 1 NC_008358.1 identified by similarity to SP:Q02731; match to protein family HMM PF02397; sugar transferase 2812506 4289824 HNE_2651 Hyphomonas neptunium ATCC 15444 sugar transferase YP_761339.1 2811811 D 228405 CDS YP_761340.1 114797300 4289224 2812658..2813542 1 NC_008358.1 identified by similarity to SP:P37073; match to protein family HMM PF00722; putative licheninase 2813542 4289224 HNE_2652 Hyphomonas neptunium ATCC 15444 putative licheninase YP_761340.1 2812658 D 228405 CDS YP_761341.1 114798317 4287100 2813620..2814276 1 NC_008358.1 identified by similarity to SP:P25960; match to protein family HMM PF01478; prepilin peptidase 2814276 gspO 4287100 gspO Hyphomonas neptunium ATCC 15444 prepilin peptidase YP_761341.1 2813620 D 228405 CDS YP_761342.1 114798278 4287219 complement(2820695..2821129) 1 NC_008358.1 identified by match to protein family HMM PF00571; hypothetical protein 2821129 4287219 HNE_2660 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761342.1 2820695 R 228405 CDS YP_761343.1 114798813 4289163 complement(2821244..2821957) 1 NC_008358.1 identified by match to protein family HMM PF01694; S54 family peptidase 2821957 4289163 HNE_2661 Hyphomonas neptunium ATCC 15444 S54 family peptidase YP_761343.1 2821244 R 228405 CDS YP_761344.1 114797374 4287305 complement(2822511..2825147) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2825147 4287305 HNE_2662 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761344.1 2822511 R 228405 CDS YP_761345.1 114798339 4288622 2825506..2826045 1 NC_008358.1 hypothetical protein 2826045 4288622 HNE_2663 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761345.1 2825506 D 228405 CDS YP_761346.1 114798692 4289762 complement(2826189..2826482) 1 NC_008358.1 identified by similarity to SP:Q46560; match to protein family HMM PF01381; match to protein family HMM TIGR02607; addiction module antidote protein 2826482 higA 4289762 higA Hyphomonas neptunium ATCC 15444 addiction module antidote protein YP_761346.1 2826189 R 228405 CDS YP_761347.1 114799282 4288597 complement(2826495..2826776) 1 NC_008358.1 identified by match to protein family HMM PF05015; plasmid maintenance system killer protein 2826776 4288597 HNE_2665 Hyphomonas neptunium ATCC 15444 plasmid maintenance system killer protein YP_761347.1 2826495 R 228405 CDS YP_761348.1 114797128 4287156 complement(2826826..2828463) 1 NC_008358.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 2828463 betA 4287156 betA Hyphomonas neptunium ATCC 15444 choline dehydrogenase YP_761348.1 2826826 R 228405 CDS YP_761349.1 114799843 4290151 2828637..2829248 1 NC_008358.1 hypothetical protein 2829248 4290151 HNE_2667 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761349.1 2828637 D 228405 CDS YP_761350.1 114798682 4289863 complement(2829309..2829839) 1 NC_008358.1 identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase 2829839 4289863 HNE_2668 Hyphomonas neptunium ATCC 15444 hexapaptide repeat-containing transferase YP_761350.1 2829309 R 228405 CDS YP_761351.1 114799960 4290115 2830103..2830912 1 NC_008358.1 identified by match to protein family HMM PF02562; PhoH family protein 2830912 4290115 HNE_2669 Hyphomonas neptunium ATCC 15444 PhoH family protein YP_761351.1 2830103 D 228405 CDS YP_761352.1 114800423 4290367 2831030..2832100 1 NC_008358.1 identified by similarity to GB:AAS71125.1; putative lipoprotein 2832100 4290367 HNE_2670 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761352.1 2831030 D 228405 CDS YP_761353.1 114799279 4288594 complement(2832120..2832536) 1 NC_008358.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 2832536 apaG 4288594 apaG Hyphomonas neptunium ATCC 15444 ApaG protein YP_761353.1 2832120 R 228405 CDS YP_761354.1 114797978 4288341 complement(2832562..2833761) 1 NC_008358.1 identified by similarity to SP:P55218; match to protein family HMM PF00155; match to protein family HMM PF01053; match to protein family HMM TIGR01325; O-succinylhomoserine sulfhydrylase 2833761 metZ 4288341 metZ Hyphomonas neptunium ATCC 15444 O-succinylhomoserine sulfhydrylase YP_761354.1 2832562 R 228405 CDS YP_761355.1 114797741 4288278 2833832..2834839 1 NC_008358.1 Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 2834839 4288278 HNE_2673 Hyphomonas neptunium ATCC 15444 2'-deoxycytidine 5'-triphosphate deaminase YP_761355.1 2833832 D 228405 CDS YP_761356.1 114800013 4288805 complement(2834940..2836496) 1 NC_008358.1 identified by match to protein family HMM PF00324; amino acid transporter 2836496 4288805 HNE_2674 Hyphomonas neptunium ATCC 15444 amino acid transporter YP_761356.1 2834940 R 228405 CDS YP_761357.1 114798840 4287804 2836782..2837096 1 NC_008358.1 hypothetical protein 2837096 4287804 HNE_2675 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761357.1 2836782 D 228405 CDS YP_761358.1 114798094 4288242 2837112..2837795 1 NC_008358.1 hypothetical protein 2837795 4288242 HNE_2676 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761358.1 2837112 D 228405 CDS YP_761359.1 114797155 4287614 complement(2837792..2838541) 1 NC_008358.1 identified by match to protein family HMM PF04338; hypothetical protein 2838541 4287614 HNE_2677 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761359.1 2837792 R 228405 CDS YP_761360.1 114800081 4289964 complement(2838601..2839332) 1 NC_008358.1 identified by similarity to GB:BAB48250.1; match to protein family HMM PF00227; T1A family peptidase 2839332 4289964 HNE_2678 Hyphomonas neptunium ATCC 15444 T1A family peptidase YP_761360.1 2838601 R 228405 CDS YP_761361.1 114798479 4288762 complement(2839357..2840160) 1 NC_008358.1 identified by match to protein family HMM PF01841; transglutaminase family protein 2840160 4288762 HNE_2679 Hyphomonas neptunium ATCC 15444 transglutaminase family protein YP_761361.1 2839357 R 228405 CDS YP_761362.1 114799734 4288018 complement(2840171..2841112) 1 NC_008358.1 identified by similarity to PIR:AB2864; match to protein family HMM PF04168; hypothetical protein 2841112 4288018 HNE_2680 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761362.1 2840171 R 228405 CDS YP_761363.1 114798954 4289654 complement(2841117..2842544) 1 NC_008358.1 identified by similarity to PIR:D95989; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 2842544 4289654 HNE_2681 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761363.1 2841117 R 228405 CDS YP_761364.1 114799017 4287534 complement(2842669..2844495) 1 NC_008358.1 identified by match to protein family HMM PF02080; TrkA domain-containing protein 2844495 4287534 HNE_2682 Hyphomonas neptunium ATCC 15444 TrkA domain-containing protein YP_761364.1 2842669 R 228405 CDS YP_761365.1 114798644 4289903 2844834..2845994 1 NC_008358.1 identified by match to protein family HMM PF01757; acyltransferase family protein 2845994 4289903 HNE_2684 Hyphomonas neptunium ATCC 15444 acyltransferase family protein YP_761365.1 2844834 D 228405 CDS YP_761366.1 114797823 4288476 2846253..2847062 1 NC_008358.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 2847062 4288476 HNE_2686 Hyphomonas neptunium ATCC 15444 RNA methyltransferase YP_761366.1 2846253 D 228405 CDS YP_761367.1 114800159 4290003 complement(2847083..2847790) 1 NC_008358.1 hypothetical protein 2847790 4290003 HNE_2687 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761367.1 2847083 R 228405 CDS YP_761368.1 114800172 4290016 complement(2848086..2848790) 1 NC_008358.1 hypothetical protein 2848790 4290016 HNE_2688 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761368.1 2848086 R 228405 CDS YP_761369.1 114798219 4288600 2848958..2849584 1 NC_008358.1 hypothetical protein 2849584 4288600 HNE_2689 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761369.1 2848958 D 228405 CDS YP_761370.1 114797288 4289212 complement(2849597..2850769) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 2850769 mmgC 4289212 mmgC Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_761370.1 2849597 R 228405 CDS YP_761371.1 114799582 4289078 complement(2850826..2851992) 1 NC_008358.1 identified by similarity to SP:O31616; match to protein family HMM PF01266; putative glycine oxidase 2851992 4289078 HNE_2691 Hyphomonas neptunium ATCC 15444 putative glycine oxidase YP_761371.1 2850826 R 228405 CDS YP_761372.1 114798805 4289155 complement(2852033..2852452) 1 NC_008358.1 hypothetical protein 2852452 4289155 HNE_2692 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761372.1 2852033 R 228405 CDS YP_761373.1 114798060 4289535 2852529..2853620 1 NC_008358.1 identified by match to protein family HMM PF01547; iron ABC transporter substrate-binding protein 2853620 4289535 HNE_2693 Hyphomonas neptunium ATCC 15444 iron ABC transporter substrate-binding protein YP_761373.1 2852529 D 228405 CDS YP_761374.1 114798364 4290421 2853656..2855221 1 NC_008358.1 identified by match to protein family HMM PF00528; ABC transporter permease 2855221 4290421 HNE_2694 Hyphomonas neptunium ATCC 15444 ABC transporter permease YP_761374.1 2853656 D 228405 CDS YP_761375.1 114797566 4287284 2855218..2856225 1 NC_008358.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2856225 4287284 HNE_2695 Hyphomonas neptunium ATCC 15444 iron ABC transporter ATP-binding protein YP_761375.1 2855218 D 228405 CDS YP_761376.1 114800353 4288716 2856317..2857753 1 NC_008358.1 identified by match to protein family HMM PF01435; M48 family peptidase 2857753 4288716 HNE_2696 Hyphomonas neptunium ATCC 15444 M48 family peptidase YP_761376.1 2856317 D 228405 CDS YP_761377.1 114799585 4289081 2857851..2858591 1 NC_008358.1 identified by similarity to PIR:A49232; match to protein family HMM PF01323; outer membrane protein 2858591 4289081 HNE_2697 Hyphomonas neptunium ATCC 15444 outer membrane protein YP_761377.1 2857851 D 228405 CDS YP_761378.1 114797818 4288471 complement(2858592..2859554) 1 NC_008358.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2859554 4288471 HNE_2698 Hyphomonas neptunium ATCC 15444 NAD-dependent epimerase/dehydratase family protein YP_761378.1 2858592 R 228405 CDS YP_761379.1 114797179 4287049 complement(2859671..2860105) 1 NC_008358.1 identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein 2860105 4287049 HNE_2699 Hyphomonas neptunium ATCC 15444 peptidyl-tRNA hydrolase domain-containing protein YP_761379.1 2859671 R 228405 CDS YP_761380.1 114799951 4290106 2860243..2860767 1 NC_008358.1 hypothetical protein 2860767 4290106 HNE_2700 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761380.1 2860243 D 228405 CDS YP_761381.1 114799355 4288125 2860940..2861338 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 2861338 4288125 HNE_2701 Hyphomonas neptunium ATCC 15444 NUDIX family NudH subfamily hydrolase YP_761381.1 2860940 D 228405 CDS YP_761382.1 114797211 4289928 complement(2861558..2861665) 1 NC_008358.1 hypothetical protein 2861665 4289928 HNE_2702 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761382.1 2861558 R 228405 CDS YP_761383.1 114799187 4288404 2861665..2862795 1 NC_008358.1 putative lipoprotein 2862795 4288404 HNE_2703 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761383.1 2861665 D 228405 CDS YP_761384.1 114799724 4289142 2862820..2864466 1 NC_008358.1 hypothetical protein 2864466 4289142 HNE_2704 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761384.1 2862820 D 228405 CDS YP_761385.1 114797578 4286983 2864742..2866334 1 NC_008358.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2866334 pckA 4286983 pckA Hyphomonas neptunium ATCC 15444 phosphoenolpyruvate carboxykinase YP_761385.1 2864742 D 228405 CDS YP_761386.1 114798142 4290375 2866498..2867706 1 NC_008358.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acyltransferase/thiolase family protein 2867706 4290375 HNE_2706 Hyphomonas neptunium ATCC 15444 acetyl-CoA acyltransferase/thiolase family protein YP_761386.1 2866498 D 228405 CDS YP_761387.1 114799738 4288022 2867863..2868606 1 NC_008358.1 identified by similarity to GB:CAB45042.1; putative lipoprotein 2868606 4288022 HNE_2707 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761387.1 2867863 D 228405 CDS YP_761388.1 114798971 4287428 2868611..2869129 1 NC_008358.1 putative lipoprotein 2869129 4287428 HNE_2708 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761388.1 2868611 D 228405 CDS YP_761389.1 114798561 4287405 2869281..2870369 1 NC_008358.1 hypothetical protein 2870369 4287405 HNE_2709 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761389.1 2869281 D 228405 CDS YP_761390.1 114797057 4287025 complement(2870366..2871316) 1 NC_008358.1 identified by match to protein family HMM PF00581; rhodanese domain-containing protein 2871316 4287025 HNE_2710 Hyphomonas neptunium ATCC 15444 rhodanese domain-containing protein YP_761390.1 2870366 R 228405 CDS YP_761391.1 114798528 4290333 2872092..2872583 1 NC_008358.1 identified by similarity to GB:CAE38612.1; hypothetical protein 2872583 4290333 HNE_2711 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761391.1 2872092 D 228405 CDS YP_761392.1 114799136 4287790 complement(2872665..2874557) 1 NC_008358.1 identified by similarity to GB:AAM36379.1; hypothetical protein 2874557 4287790 HNE_2712 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761392.1 2872665 R 228405 CDS YP_761393.1 114799593 4289089 complement(2874605..2875552) 1 NC_008358.1 identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2875552 ispH 4289089 ispH Hyphomonas neptunium ATCC 15444 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_761393.1 2874605 R 228405 CDS YP_761394.1 114800357 4288720 2875581..2876252 1 NC_008358.1 hypothetical protein 2876252 4288720 HNE_2714 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761394.1 2875581 D 228405 CDS YP_761395.1 114797992 4289313 2876256..2878025 1 NC_008358.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2878025 argS 4289313 argS Hyphomonas neptunium ATCC 15444 arginyl-tRNA synthetase YP_761395.1 2876256 D 228405 CDS YP_761396.1 114798751 4287986 2878667..2879836 1 NC_008358.1 hypothetical protein 2879836 4287986 HNE_2716 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761396.1 2878667 D 228405 CDS YP_761397.1 114799308 4287317 2879936..2881000 1 NC_008358.1 identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 2881000 4287317 HNE_2717 Hyphomonas neptunium ATCC 15444 endonuclease/exonuclease/phosphatase family protein YP_761397.1 2879936 D 228405 CDS YP_761398.1 114797772 4289616 2881130..2881906 1 NC_008358.1 hypothetical protein 2881906 4289616 HNE_2718 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761398.1 2881130 D 228405 CDS YP_761399.1 114799925 4290079 2882197..2883351 1 NC_008358.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528; glycine cleavage system T protein 2883351 gcvT 4290079 gcvT Hyphomonas neptunium ATCC 15444 glycine cleavage system T protein YP_761399.1 2882197 D 228405 CDS YP_761400.1 114799251 4289681 2883370..2883741 1 NC_008358.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 2883741 gcvH 4289681 gcvH Hyphomonas neptunium ATCC 15444 glycine cleavage system H protein YP_761400.1 2883370 D 228405 CDS YP_761401.1 114797821 4288474 2883746..2885089 1 NC_008358.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 2885089 4288474 HNE_2721 Hyphomonas neptunium ATCC 15444 glycine dehydrogenase subunit 1 YP_761401.1 2883746 D 228405 CDS YP_761402.1 114800538 4288883 2885095..2886660 1 NC_008358.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 2886660 4288883 HNE_2722 Hyphomonas neptunium ATCC 15444 glycine dehydrogenase subunit 2 YP_761402.1 2885095 D 228405 CDS YP_761403.1 114798303 4289467 complement(2886681..2888060) 1 NC_008358.1 identified by similarity to SP:P26502; match to protein family HMM PF01757; putative exopolysaccharide production protein ExoZ 2888060 4289467 HNE_2723 Hyphomonas neptunium ATCC 15444 putative exopolysaccharide production protein ExoZ YP_761403.1 2886681 R 228405 CDS YP_761404.1 114797279 4290543 2888173..2888526 1 NC_008358.1 hypothetical protein 2888526 4290543 HNE_2724 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761404.1 2888173 D 228405 CDS YP_761405.1 114797432 4287169 2888622..2890025 1 NC_008358.1 identified by match to protein family HMM PF01979; amidohydrolase family protein 2890025 4287169 HNE_2725 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_761405.1 2888622 D 228405 CDS YP_761406.1 114799767 4288051 2890022..2891296 1 NC_008358.1 identified by match to protein family HMM PF01979; amidohydrolase family protein 2891296 4288051 HNE_2726 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_761406.1 2890022 D 228405 CDS YP_761407.1 114799047 4290525 2891462..2892208 1 NC_008358.1 hypothetical protein 2892208 4290525 HNE_2727 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761407.1 2891462 D 228405 CDS YP_761408.1 114798461 4287696 2892218..2892634 1 NC_008358.1 identified by match to protein family HMM PF07370; hypothetical protein 2892634 4287696 HNE_2728 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761408.1 2892218 D 228405 CDS YP_761409.1 114799561 4288546 2892767..2893891 1 NC_008358.1 putative lipoprotein 2893891 4288546 HNE_2729 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761409.1 2892767 D 228405 CDS YP_761410.1 114800484 4289437 2893961..2894194 1 NC_008358.1 hypothetical protein 2894194 4289437 HNE_2730 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761410.1 2893961 D 228405 CDS YP_761411.1 114798505 4287758 complement(2894198..2894524) 1 NC_008358.1 identified by match to protein family HMM PF07883; cupin domain-containing protein 2894524 4287758 HNE_2731 Hyphomonas neptunium ATCC 15444 cupin domain-containing protein YP_761411.1 2894198 R 228405 CDS YP_761412.1 114800124 4290457 2894729..2895523 1 NC_008358.1 identified by similarity to GB:CAG35112.1; match to protein family HMM PF01925; hypothetical protein 2895523 4290457 HNE_2732 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761412.1 2894729 D 228405 CDS YP_761413.1 114797151 4287610 complement(2895520..2896974) 1 NC_008358.1 identified by similarity to GB:BAA31229.1; match to protein family HMM PF02386; putative potassium uptake protein TrkH 2896974 4287610 HNE_2733 Hyphomonas neptunium ATCC 15444 putative potassium uptake protein TrkH YP_761413.1 2895520 R 228405 CDS YP_761414.1 114798091 4288239 complement(2897012..2897203) 1 NC_008358.1 hypothetical protein 2897203 4288239 HNE_2734 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761414.1 2897012 R 228405 CDS YP_761415.1 114798110 4289605 2897114..2898169 1 NC_008358.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812; leucine dehydrogenase 2898169 ldh2 4289605 ldh2 Hyphomonas neptunium ATCC 15444 leucine dehydrogenase YP_761415.1 2897114 D 228405 CDS YP_761416.1 114799771 4289788 2898256..2899086 1 NC_008358.1 identified by match to protein family HMM PF00582; universal stress protein family protein 2899086 4289788 HNE_2736 Hyphomonas neptunium ATCC 15444 universal stress protein family protein YP_761416.1 2898256 D 228405 CDS YP_761417.1 114797452 4288572 2899111..2899476 1 NC_008358.1 hypothetical protein 2899476 4288572 HNE_2737 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761417.1 2899111 D 228405 CDS YP_761418.1 114798207 4287831 complement(2899705..2900592) 1 NC_008358.1 identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 2900592 4287831 HNE_2739 Hyphomonas neptunium ATCC 15444 pyridine nucleotide-disulfide oxidoreductase YP_761418.1 2899705 R 228405 CDS YP_761419.1 114798919 4287863 complement(2900597..2901040) 1 NC_008358.1 identified by match to protein family HMM PF02082; hypothetical protein 2901040 4287863 HNE_2740 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761419.1 2900597 R 228405 CDS YP_761420.1 114800099 4289982 complement(2901154..2903799) 1 NC_008358.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2903799 alaS 4289982 alaS Hyphomonas neptunium ATCC 15444 alanyl-tRNA synthetase YP_761420.1 2901154 R 228405 CDS YP_761421.1 114797171 4287041 complement(2903977..2905047) 1 NC_008358.1 identified by similarity to SP:Q08327; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein 2905047 recA 4287041 recA Hyphomonas neptunium ATCC 15444 recA protein YP_761421.1 2903977 R 228405 CDS YP_761422.1 114797746 4288283 2905185..2905436 1 NC_008358.1 hypothetical protein 2905436 4288283 HNE_2743 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761422.1 2905185 D 228405 CDS YP_761423.1 114798722 4290450 2905433..2906254 1 NC_008358.1 hypothetical protein 2906254 4290450 HNE_2744 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761423.1 2905433 D 228405 CDS YP_761424.1 114799304 4287313 complement(2906263..2908296) 1 NC_008358.1 hypothetical protein 2908296 4287313 HNE_2745 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761424.1 2906263 R 228405 CDS YP_761425.1 114798399 4289740 complement(2908410..2909387) 1 NC_008358.1 identified by similarity to SP:P40783; match to protein family HMM PF00107; putative quinone oxidoreductase 2909387 4289740 HNE_2746 Hyphomonas neptunium ATCC 15444 putative quinone oxidoreductase YP_761425.1 2908410 R 228405 CDS YP_761426.1 114799657 4288679 2909515..2909883 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 2909883 4288679 HNE_2747 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_761426.1 2909515 D 228405 CDS YP_761427.1 114799956 4290111 complement(2909911..2910171) 1 NC_008358.1 hypothetical protein 2910171 4290111 HNE_2748 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761427.1 2909911 R 228405 CDS YP_761428.1 114797602 4288314 complement(2910171..2910959) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2910959 4288314 HNE_2749 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_761428.1 2910171 R 228405 CDS YP_761429.1 114797526 4289487 complement(2910960..2911736) 1 NC_008358.1 identified by match to protein family HMM PF03741; TerC family membrane protein 2911736 4289487 HNE_2750 Hyphomonas neptunium ATCC 15444 TerC family membrane protein YP_761429.1 2910960 R 228405 CDS YP_761430.1 114800471 4289424 2911879..2912862 1 NC_008358.1 identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561; putative epoxide hydrolase 2912862 4289424 HNE_2751 Hyphomonas neptunium ATCC 15444 putative epoxide hydrolase YP_761430.1 2911879 D 228405 CDS YP_761431.1 114800515 4288860 2912977..2913699 1 NC_008358.1 hypothetical protein 2913699 4288860 HNE_2752 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761431.1 2912977 D 228405 CDS YP_761432.1 114798996 4288428 complement(2913791..2914432) 1 NC_008358.1 hypothetical protein 2914432 4288428 HNE_2753 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761432.1 2913791 R 228405 CDS YP_761433.1 114798016 4290072 complement(2914580..2915353) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD dependent epimerase/dehydratase family protein 2915353 4290072 HNE_2754 Hyphomonas neptunium ATCC 15444 NAD dependent epimerase/dehydratase family protein YP_761433.1 2914580 R 228405 CDS YP_761434.1 114797072 4287353 2915483..2916106 1 NC_008358.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2916106 rnhB 4287353 rnhB Hyphomonas neptunium ATCC 15444 ribonuclease HII YP_761434.1 2915483 D 228405 CDS YP_761435.1 114799084 4287738 2916153..2916623 1 NC_008358.1 GIY-YIG domain-containing protein 2916623 4287738 HNE_2756 Hyphomonas neptunium ATCC 15444 GIY-YIG domain-containing protein YP_761435.1 2916153 D 228405 CDS YP_761436.1 114797801 4288065 complement(2916630..2917685) 1 NC_008358.1 identified by similarity to SP:O32054; match to protein family HMM PF02547; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2917685 queA 4288065 queA Hyphomonas neptunium ATCC 15444 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_761436.1 2916630 R 228405 CDS YP_761437.1 114800546 4289048 complement(2917718..2918701) 1 NC_008358.1 identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 2918701 4289048 HNE_2758 Hyphomonas neptunium ATCC 15444 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_761437.1 2917718 R 228405 CDS YP_761438.1 114799402 4289539 complement(2918698..2919195) 1 NC_008358.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 2919195 coaD 4289539 coaD Hyphomonas neptunium ATCC 15444 pantetheine-phosphate adenylyltransferase YP_761438.1 2918698 R 228405 CDS YP_761439.1 114798624 4289883 complement(2919249..2922029) 1 NC_008358.1 identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 2922029 gyrA 4289883 gyrA Hyphomonas neptunium ATCC 15444 DNA gyrase subunit A YP_761439.1 2919249 R 228405 CDS YP_761440.1 114798250 4288943 2922207..2923262 1 NC_008358.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646; kelch repeat-containing protein 2923262 4288943 HNE_2761 Hyphomonas neptunium ATCC 15444 kelch repeat-containing protein YP_761440.1 2922207 D 228405 CDS YP_761441.1 114800326 4289260 2923295..2923954 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2923954 4289260 HNE_2762 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761441.1 2923295 D 228405 CDS YP_761442.1 114799804 4289821 complement(2923963..2924784) 1 NC_008358.1 identified by similarity to SP:P05191; match to protein family HMM PF00905; putative beta-lactamase 2924784 4289821 HNE_2763 Hyphomonas neptunium ATCC 15444 putative beta-lactamase YP_761442.1 2923963 R 228405 CDS YP_761443.1 114797480 4289695 complement(2924846..2925337) 1 NC_008358.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 2925337 ssb 4289695 ssb Hyphomonas neptunium ATCC 15444 single-strand binding protein YP_761443.1 2924846 R 228405 CDS YP_761444.1 114798706 4290434 2925564..2928542 1 NC_008358.1 identified by similarity to SP:Q50968; match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2928542 uvrA 4290434 uvrA Hyphomonas neptunium ATCC 15444 excinuclease ABC subunit A YP_761444.1 2925564 D 228405 CDS YP_761445.1 114799509 4288902 complement(2928560..2929540) 1 NC_008358.1 hypothetical protein 2929540 4288902 HNE_2766 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761445.1 2928560 R 228405 CDS YP_761446.1 114800262 4287497 complement(2929595..2930410) 1 NC_008358.1 hypothetical protein 2930410 4287497 HNE_2767 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761446.1 2929595 R 228405 CDS YP_761447.1 114797503 4287632 2930509..2931912 1 NC_008358.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2931912 gid 4287632 gid Hyphomonas neptunium ATCC 15444 tRNA (uracil-5-)-methyltransferase Gid YP_761447.1 2930509 D 228405 CDS YP_761448.1 114797440 4287177 2931918..2932805 1 NC_008358.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2932805 4287177 HNE_2769 Hyphomonas neptunium ATCC 15444 C32 tRNA thiolase YP_761448.1 2931918 D 228405 CDS YP_761449.1 114799393 4288515 complement(2932806..2934095) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 2934095 4288515 HNE_2770 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761449.1 2932806 R 228405 CDS YP_761450.1 114799900 4290229 complement(2934191..2935504) 1 NC_008358.1 identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797; putative DNA-damage-inducible protein F 2935504 4290229 HNE_2771 Hyphomonas neptunium ATCC 15444 putative DNA-damage-inducible protein F YP_761450.1 2934191 R 228405 CDS YP_761451.1 114797831 4288775 complement(2935604..2936905) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 2936905 4288775 HNE_2772 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761451.1 2935604 R 228405 CDS YP_761452.1 114799162 4287014 2937036..2937782 1 NC_008358.1 identified by similarity to GB:BAC52694.1; match to protein family HMM PF01925; hypothetical protein 2937782 4287014 HNE_2773 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761452.1 2937036 D 228405 CDS YP_761453.1 114799906 4290236 2937953..2938846 1 NC_008358.1 identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2938846 4290236 HNE_2774 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_761453.1 2937953 D 228405 CDS YP_761454.1 114800280 4287925 complement(2938870..2940606) 1 NC_008358.1 identified by similarity to GB:AAS14895.1; match to protein family HMM PF00999; match to protein family HMM PF02254; glutathione-regulated potassium-efflux system protein 2940606 4287925 HNE_2775 Hyphomonas neptunium ATCC 15444 glutathione-regulated potassium-efflux system protein YP_761454.1 2938870 R 228405 CDS YP_761455.1 114798136 4287604 complement(2940664..2941104) 1 NC_008358.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein 2941104 4287604 HNE_2776 Hyphomonas neptunium ATCC 15444 cytidine/deoxycytidylate deaminase family protein YP_761455.1 2940664 R 228405 CDS YP_761456.1 114799259 4289689 complement(2941194..2941862) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2941862 4289689 HNE_2777 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase family protein YP_761456.1 2941194 R 228405 CDS YP_761457.1 114800273 4287508 2942008..2942568 1 NC_008358.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 2942568 4287508 HNE_2778 Hyphomonas neptunium ATCC 15444 putative methyltransferase YP_761457.1 2942008 D 228405 CDS YP_761458.1 114797727 4289242 complement(2942565..2942978) 1 NC_008358.1 hypothetical protein 2942978 4289242 HNE_2779 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761458.1 2942565 R 228405 CDS YP_761459.1 114797322 4287527 complement(2943054..2944085) 1 NC_008358.1 identified by match to protein family HMM PF01734; patatin family phospholipase 2944085 4287527 HNE_2780 Hyphomonas neptunium ATCC 15444 patatin family phospholipase YP_761459.1 2943054 R 228405 CDS YP_761460.1 114799366 4288837 2944171..2945421 1 NC_008358.1 identified by match to protein family HMM PF05958; putative 23S rRNA (uracil-5-)-methyltransferase RumA 2945421 4288837 HNE_2781 Hyphomonas neptunium ATCC 15444 putative 23S rRNA (uracil-5-)-methyltransferase RumA YP_761460.1 2944171 D 228405 CDS YP_761461.1 114798768 4289833 2945418..2945864 1 NC_008358.1 identified by similarity to SP:Q58549; match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 2945864 4289833 HNE_2782 Hyphomonas neptunium ATCC 15444 NUDIX family NudH subfamily hydrolase YP_761461.1 2945418 D 228405 CDS YP_761462.1 114797788 4289632 2946035..2946820 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2946820 4289632 HNE_2783 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761462.1 2946035 D 228405 CDS YP_761463.1 114799889 4290218 2946938..2947267 1 NC_008358.1 hypothetical protein 2947267 4290218 HNE_2784 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761463.1 2946938 D 228405 CDS YP_761464.1 114798807 4289157 complement(2947385..2947744) 1 NC_008358.1 hypothetical protein 2947744 4289157 HNE_2785 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761464.1 2947385 R 228405 CDS YP_761465.1 114798273 4287253 2947962..2948939 1 NC_008358.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060; trans-2-enoyl-ACP reductase II 2948939 4287253 HNE_2786 Hyphomonas neptunium ATCC 15444 trans-2-enoyl-ACP reductase II YP_761465.1 2947962 D 228405 CDS YP_761466.1 114800373 4288736 complement(2948987..2949991) 1 NC_008358.1 identified by match to protein family HMM PF01544; magnesium and cobalt transport protein CorA 2949991 corA 4288736 corA Hyphomonas neptunium ATCC 15444 magnesium and cobalt transport protein CorA YP_761466.1 2948987 R 228405 CDS YP_761467.1 114799604 4289100 complement(2950058..2951239) 1 NC_008358.1 identified by match to protein family HMM PF07995; glucose/sorbosone family dehydrogenase 2951239 4289100 HNE_2788 Hyphomonas neptunium ATCC 15444 glucose/sorbosone family dehydrogenase YP_761467.1 2950058 R 228405 CDS YP_761468.1 114798418 4288157 complement(2951264..2952259) 1 NC_008358.1 identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein 2952259 4288157 HNE_2789 Hyphomonas neptunium ATCC 15444 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_761468.1 2951264 R 228405 CDS YP_761469.1 114799433 4289337 2952239..2952676 1 NC_008358.1 identified by match to protein family HMM TIGR02301; hypothetical protein 2952676 4289337 HNE_2790 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761469.1 2952239 D 228405 CDS YP_761470.1 114798236 4288617 2952673..2954583 1 NC_008358.1 identified by match to protein family HMM PF01019; gamma-glutamyltransferase 2954583 ggt1 4288617 ggt1 Hyphomonas neptunium ATCC 15444 gamma-glutamyltransferase YP_761470.1 2952673 D 228405 CDS YP_761471.1 114797491 4289706 2954573..2955232 1 NC_008358.1 identified by match to protein family HMM PF03167; uracil-DNA glycosylase family protein 2955232 4289706 HNE_2792 Hyphomonas neptunium ATCC 15444 uracil-DNA glycosylase family protein YP_761471.1 2954573 D 228405 CDS YP_761472.1 114799696 4289114 complement(2955229..2955867) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2955867 4289114 HNE_2793 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761472.1 2955229 R 228405 CDS YP_761473.1 114799652 4290292 2955949..2956980 1 NC_008358.1 identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 2956980 4290292 HNE_2794 Hyphomonas neptunium ATCC 15444 phosphotransferase enzyme family protein YP_761473.1 2955949 D 228405 CDS YP_761474.1 114798453 4287688 2957024..2958250 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; putative acyl-CoA dehydrogenase 2958250 4287688 HNE_2795 Hyphomonas neptunium ATCC 15444 putative acyl-CoA dehydrogenase YP_761474.1 2957024 D 228405 CDS YP_761475.1 114797612 4288324 2958275..2959318 1 NC_008358.1 identified by match to protein family HMM PF00107; class III alcohol dehydrogenase 2959318 4288324 HNE_2796 Hyphomonas neptunium ATCC 15444 class III alcohol dehydrogenase YP_761475.1 2958275 D 228405 CDS YP_761476.1 114800014 4288806 2959410..2960672 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 2960672 4288806 HNE_2797 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_761476.1 2959410 D 228405 CDS YP_761477.1 114799234 4288297 complement(2960739..2961332) 1 NC_008358.1 identified by match to protein family HMM PF03031; phosphoprotein phosphatase 2961332 4288297 HNE_2798 Hyphomonas neptunium ATCC 15444 phosphoprotein phosphatase YP_761477.1 2960739 R 228405 CDS YP_761478.1 114797634 4288656 complement(2961333..2961818) 1 NC_008358.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2961818 smpB 4288656 smpB Hyphomonas neptunium ATCC 15444 SsrA-binding protein YP_761478.1 2961333 R 228405 CDS YP_761479.1 114798403 4289744 complement(2961828..2962709) 1 NC_008358.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2962709 dapA 4289744 dapA Hyphomonas neptunium ATCC 15444 dihydrodipicolinate synthase YP_761479.1 2961828 R 228405 CDS YP_761480.1 114800029 4288821 2962811..2965003 1 NC_008358.1 identified by similarity to SP:P03810; match to protein family HMM PF01464; Slt family transglycosylase 2965003 4288821 HNE_2801 Hyphomonas neptunium ATCC 15444 Slt family transglycosylase YP_761480.1 2962811 D 228405 CDS YP_761481.1 114797083 4287364 2965327..2965722 1 NC_008358.1 hypothetical protein 2965722 4287364 HNE_2802 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761481.1 2965327 D 228405 CDS YP_761482.1 114797304 4287509 complement(2965861..2967297) 1 NC_008358.1 identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171; coniferyl aldehyde dehydrogenase 2967297 calB 4287509 calB Hyphomonas neptunium ATCC 15444 coniferyl aldehyde dehydrogenase YP_761482.1 2965861 R 228405 CDS YP_761483.1 114798301 4289465 2967465..2968265 1 NC_008358.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2968265 4289465 HNE_2804 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_761483.1 2967465 D 228405 CDS YP_761484.1 114800167 4290011 2968364..2968852 1 NC_008358.1 hypothetical protein 2968852 4290011 HNE_2805 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761484.1 2968364 D 228405 CDS YP_761485.1 114797631 4288653 complement(2968855..2969232) 1 NC_008358.1 identified by match to protein family HMM PF04993; TfoX domain-containing protein 2969232 4288653 HNE_2806 Hyphomonas neptunium ATCC 15444 TfoX domain-containing protein YP_761485.1 2968855 R 228405 CDS YP_761486.1 114797266 4290530 2969231..2969524 1 NC_008358.1 hypothetical protein 2969524 4290530 HNE_2808 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761486.1 2969231 D 228405 CDS YP_761487.1 114798438 4290300 complement(2969249..2969380) 1 NC_008358.1 hypothetical protein 2969380 4290300 HNE_2807 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761487.1 2969249 R 228405 CDS YP_761488.1 114799425 4289329 complement(2969503..2970699) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 2970699 4289329 HNE_2809 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_761488.1 2969503 R 228405 CDS YP_761489.1 114797804 4288068 complement(2970738..2971898) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 2971898 4288068 HNE_2810 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_761489.1 2970738 R 228405 CDS YP_761490.1 114799197 4289952 2972010..2972441 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 2972441 4289952 HNE_2811 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761490.1 2972010 D 228405 CDS YP_761491.1 114799740 4288024 2972438..2973229 1 NC_008358.1 identified by similarity to GB:AAO66470.1; match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2973229 4288024 HNE_2812 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761491.1 2972438 D 228405 CDS YP_761492.1 114797546 4287381 complement(2973328..2975991) 1 NC_008358.1 identified by match to protein family HMM PF01433; M1 family peptidase 2975991 4287381 HNE_2813 Hyphomonas neptunium ATCC 15444 M1 family peptidase YP_761492.1 2973328 R 228405 CDS YP_761493.1 114798409 4289750 complement(2978025..2978639) 1 NC_008358.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2978639 4289750 HNE_2815 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761493.1 2978025 R 228405 CDS YP_761494.1 114799151 4287003 complement(2978650..2980584) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 2980584 4287003 HNE_2816 Hyphomonas neptunium ATCC 15444 putative TonB-dependent receptor YP_761494.1 2978650 R 228405 CDS YP_761495.1 114800517 4288862 complement(2980743..2982032) 1 NC_008358.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; NupC family nucleoside transporter 2982032 4288862 HNE_2817 Hyphomonas neptunium ATCC 15444 NupC family nucleoside transporter YP_761495.1 2980743 R 228405 CDS YP_761496.1 114797922 4287272 2982243..2983790 1 NC_008358.1 identified by match to protein family HMM PF00450; serine carboxypeptidase family protein 2983790 4287272 HNE_2818 Hyphomonas neptunium ATCC 15444 serine carboxypeptidase family protein YP_761496.1 2982243 D 228405 CDS YP_761497.1 114798926 4287870 complement(2984329..2984694) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 2984694 4287870 HNE_2819 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_761497.1 2984329 R 228405 CDS YP_761498.1 114800383 4288746 2984839..2985759 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2985759 4288746 HNE_2820 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761498.1 2984839 D 228405 CDS YP_761499.1 114797599 4288311 2985826..2986200 1 NC_008358.1 identified by match to protein family HMM PF00050; match to protein family HMM PF07648; Kazal domain-containing protein 2986200 4288311 HNE_2821 Hyphomonas neptunium ATCC 15444 Kazal domain-containing protein YP_761499.1 2985826 D 228405 CDS YP_761500.1 114798377 4288369 complement(2986216..2986443) 1 NC_008358.1 hypothetical protein 2986443 4288369 HNE_2822 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761500.1 2986216 R 228405 CDS YP_761501.1 114799134 4287788 complement(2986459..2987055) 1 NC_008358.1 identified by similarity to GB:AAV93946.1; hypothetical protein 2987055 4287788 HNE_2823 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761501.1 2986459 R 228405 CDS YP_761502.1 114800085 4289968 complement(2987157..2988221) 1 NC_008358.1 hypothetical protein 2988221 4289968 HNE_2824 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761502.1 2987157 R 228405 CDS YP_761503.1 114799107 4289206 complement(2988553..2989926) 1 NC_008358.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2989926 4289206 HNE_2825 Hyphomonas neptunium ATCC 15444 Ser/Thr protein phosphatase family protein YP_761503.1 2988553 R 228405 CDS YP_761504.1 114797079 4287360 complement(2990103..2990525) 1 NC_008358.1 identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 2990525 rplQ 4287360 rplQ Hyphomonas neptunium ATCC 15444 50S ribosomal protein L17 YP_761504.1 2990103 R 228405 CDS YP_761505.1 114798821 4287551 complement(2990570..2991598) 1 NC_008358.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2991598 rpoA 4287551 rpoA Hyphomonas neptunium ATCC 15444 DNA-directed RNA polymerase subunit alpha YP_761505.1 2990570 R 228405 CDS YP_761506.1 114799611 4289107 complement(2991654..2992043) 1 NC_008358.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2992043 rpsK 4289107 rpsK Hyphomonas neptunium ATCC 15444 30S ribosomal protein S11 YP_761506.1 2991654 R 228405 CDS YP_761507.1 114800366 4288729 complement(2992057..2992425) 1 NC_008358.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2992425 rpsM 4288729 rpsM Hyphomonas neptunium ATCC 15444 30S ribosomal protein S13 YP_761507.1 2992057 R 228405 CDS YP_761508.1 114797627 4288649 complement(2992574..2993143) 1 NC_008358.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2993143 adk 4288649 adk Hyphomonas neptunium ATCC 15444 adenylate kinase YP_761508.1 2992574 R 228405 CDS YP_761509.1 114797687 4287893 complement(2993140..2994495) 1 NC_008358.1 identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY 2994495 secY 4287893 secY Hyphomonas neptunium ATCC 15444 preprotein translocase subunit SecY YP_761509.1 2993140 R 228405 CDS YP_761510.1 114797152 4287611 complement(2994585..2995064) 1 NC_008358.1 identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071; 50S ribosomal protein L15 2995064 rplO 4287611 rplO Hyphomonas neptunium ATCC 15444 50S ribosomal protein L15 YP_761510.1 2994585 R 228405 CDS YP_761511.1 114798424 4288163 complement(2995117..2995302) 1 NC_008358.1 identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308; 50S ribosomal protein L30 2995302 rpmD 4288163 rpmD Hyphomonas neptunium ATCC 15444 50S ribosomal protein L30 YP_761511.1 2995117 R 228405 CDS YP_761512.1 114799166 4287018 complement(2995315..2995917) 1 NC_008358.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2995917 rpsE 4287018 rpsE Hyphomonas neptunium ATCC 15444 30S ribosomal protein S5 YP_761512.1 2995315 R 228405 CDS YP_761513.1 114798156 4290389 complement(2995931..2996293) 1 NC_008358.1 identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060; 50S ribosomal protein L18 2996293 rplR 4290389 rplR Hyphomonas neptunium ATCC 15444 50S ribosomal protein L18 YP_761513.1 2995931 R 228405 CDS YP_761514.1 114797429 4287166 complement(2996298..2996909) 1 NC_008358.1 identified by match to protein family HMM PF00347; 50S ribosomal protein L6 2996909 rplF 4287166 rplF Hyphomonas neptunium ATCC 15444 50S ribosomal protein L6 YP_761514.1 2996298 R 228405 CDS YP_761515.1 114799650 4290290 complement(2996922..2997317) 1 NC_008358.1 identified by match to protein family HMM PF00410; 30S ribosomal protein S8 2997317 rpsH 4290290 rpsH Hyphomonas neptunium ATCC 15444 30S ribosomal protein S8 YP_761515.1 2996922 R 228405 CDS YP_761516.1 114798922 4287866 complement(2997334..2997639) 1 NC_008358.1 identified by match to protein family HMM PF00253; 30S ribosomal protein S14 2997639 rpsN 4287866 rpsN Hyphomonas neptunium ATCC 15444 30S ribosomal protein S14 YP_761516.1 2997334 R 228405 CDS YP_761517.1 114797583 4286988 complement(2997659..2998213) 1 NC_008358.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2998213 rplE 4286988 rplE Hyphomonas neptunium ATCC 15444 50S ribosomal protein L5 YP_761517.1 2997659 R 228405 CDS YP_761518.1 114799152 4287004 complement(2998206..2998523) 1 NC_008358.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2998523 rplX 4287004 rplX Hyphomonas neptunium ATCC 15444 50S ribosomal protein L24 YP_761518.1 2998206 R 228405 CDS YP_761519.1 114799563 4288548 complement(2998526..2998894) 1 NC_008358.1 identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 2998894 rplN 4288548 rplN Hyphomonas neptunium ATCC 15444 50S ribosomal protein L14 YP_761519.1 2998526 R 228405 CDS YP_761520.1 114798486 4288769 complement(2998891..2999136) 1 NC_008358.1 identified by match to protein family HMM PF00366; 30S ribosomal protein S17 2999136 rpsQ 4288769 rpsQ Hyphomonas neptunium ATCC 15444 30S ribosomal protein S17 YP_761520.1 2998891 R 228405 CDS YP_761521.1 114799564 4288549 complement(2999148..2999345) 1 NC_008358.1 identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; 50S ribosomal protein L29 2999345 rpmC 4288549 rpmC Hyphomonas neptunium ATCC 15444 50S ribosomal protein L29 YP_761521.1 2999148 R 228405 CDS YP_761522.1 114798200 4287824 complement(2999348..2999764) 1 NC_008358.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2999764 rplP 4287824 rplP Hyphomonas neptunium ATCC 15444 50S ribosomal protein L16 YP_761522.1 2999348 R 228405 CDS YP_761523.1 114797822 4288475 complement(2999768..3000505) 1 NC_008358.1 identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 3000505 rpsC 4288475 rpsC Hyphomonas neptunium ATCC 15444 30S ribosomal protein S3 YP_761523.1 2999768 R 228405 CDS YP_761524.1 114799750 4288034 complement(3000505..3000894) 1 NC_008358.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3000894 rplV 4288034 rplV Hyphomonas neptunium ATCC 15444 50S ribosomal protein L22 YP_761524.1 3000505 R 228405 CDS YP_761525.1 114799147 4287801 complement(3000897..3001175) 1 NC_008358.1 identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 3001175 rpsS 4287801 rpsS Hyphomonas neptunium ATCC 15444 30S ribosomal protein S19 YP_761525.1 3000897 R 228405 CDS YP_761526.1 114798100 4288248 complement(3001194..3002024) 1 NC_008358.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3002024 rplB 4288248 rplB Hyphomonas neptunium ATCC 15444 50S ribosomal protein L2 YP_761526.1 3001194 R 228405 CDS YP_761527.1 114799096 4289195 complement(3002043..3002342) 1 NC_008358.1 identified by match to protein family HMM PF00276; 50S ribosomal protein L23 3002342 rplW 4289195 rplW Hyphomonas neptunium ATCC 15444 50S ribosomal protein L23 YP_761527.1 3002043 R 228405 CDS YP_761528.1 114799746 4288030 complement(3002342..3002986) 1 NC_008358.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3002986 rplD 4288030 rplD Hyphomonas neptunium ATCC 15444 50S ribosomal protein L4 YP_761528.1 3002342 R 228405 CDS YP_761529.1 114797091 4287958 complement(3002986..3003744) 1 NC_008358.1 identified by match to protein family HMM PF00297; 50S ribosomal protein L3 3003744 rplC 4287958 rplC Hyphomonas neptunium ATCC 15444 50S ribosomal protein L3 YP_761529.1 3002986 R 228405 CDS YP_761530.1 114798629 4289888 complement(3003744..3004064) 1 NC_008358.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 3004064 rpsJ 4289888 rpsJ Hyphomonas neptunium ATCC 15444 30S ribosomal protein S10 YP_761530.1 3003744 R 228405 CDS YP_761531.1 114799428 4289332 complement(3004398..3005588) 1 NC_008358.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3005588 tuf2 4289332 tuf2 Hyphomonas neptunium ATCC 15444 elongation factor Tu YP_761531.1 3004398 R 228405 CDS YP_761532.1 114800238 4287473 complement(3005625..3007748) 1 NC_008358.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3007748 fusA 4287473 fusA Hyphomonas neptunium ATCC 15444 elongation factor G YP_761532.1 3005625 R 228405 CDS YP_761533.1 114799363 4288834 complement(3007836..3008306) 1 NC_008358.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3008306 rpsG 4288834 rpsG Hyphomonas neptunium ATCC 15444 30S ribosomal protein S7 YP_761533.1 3007836 R 228405 CDS YP_761534.1 114800161 4290005 complement(3008322..3008693) 1 NC_008358.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3008693 rpsL 4290005 rpsL Hyphomonas neptunium ATCC 15444 30S ribosomal protein S12 YP_761534.1 3008322 R 228405 CDS YP_761535.1 114798314 4289478 complement(3009131..3013339) 1 NC_008358.1 identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' 3013339 rpoC 4289478 rpoC Hyphomonas neptunium ATCC 15444 DNA-directed RNA polymerase subunit beta' YP_761535.1 3009131 R 228405 CDS YP_761536.1 114799111 4289906 complement(3013454..3017590) 1 NC_008358.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3017590 rpoB 4289906 rpoB Hyphomonas neptunium ATCC 15444 DNA-directed RNA polymerase subunit beta YP_761536.1 3013454 R 228405 CDS YP_761537.1 114798365 4290422 complement(3017745..3018122) 1 NC_008358.1 identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855; 50S ribosomal protein L7/L12 3018122 rplL 4290422 rplL Hyphomonas neptunium ATCC 15444 50S ribosomal protein L7/L12 YP_761537.1 3017745 R 228405 CDS YP_761538.1 114799263 4289693 complement(3018181..3018696) 1 NC_008358.1 identified by match to protein family HMM PF00466; 50S ribosomal protein L10 3018696 rplJ 4289693 rplJ Hyphomonas neptunium ATCC 15444 50S ribosomal protein L10 YP_761538.1 3018181 R 228405 CDS YP_761539.1 114800263 4287498 3019117..3019953 1 NC_008358.1 hypothetical protein 3019953 4287498 HNE_2861 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761539.1 3019117 D 228405 CDS YP_761540.1 114797871 4288661 complement(3019963..3020880) 1 NC_008358.1 hypothetical protein 3020880 4288661 HNE_2862 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761540.1 3019963 R 228405 CDS YP_761541.1 114797065 4287033 3020155..3021051 1 NC_008358.1 hypothetical protein 3021051 4287033 HNE_2863 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761541.1 3020155 D 228405 CDS YP_761542.1 114798066 4287846 complement(3021063..3021758) 1 NC_008358.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3021758 rplA 4287846 rplA Hyphomonas neptunium ATCC 15444 50S ribosomal protein L1 YP_761542.1 3021063 R 228405 CDS YP_761543.1 114799038 4290516 complement(3021764..3022210) 1 NC_008358.1 identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632; 50S ribosomal protein L11 3022210 rplK 4290516 rplK Hyphomonas neptunium ATCC 15444 50S ribosomal protein L11 YP_761543.1 3021764 R 228405 CDS YP_761544.1 114800106 4289989 complement(3022411..3023190) 1 NC_008358.1 identified by match to protein family HMM PF01435; M48 family peptidase 3023190 4289989 HNE_2866 Hyphomonas neptunium ATCC 15444 M48 family peptidase YP_761544.1 3022411 R 228405 CDS YP_761545.1 114799225 4289595 3023529..3023903 1 NC_008358.1 hypothetical protein 3023903 4289595 HNE_2867 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761545.1 3023529 D 228405 CDS YP_761546.1 114798598 4290501 3024129..3024716 1 NC_008358.1 hypothetical protein 3024716 4290501 HNE_2868 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761546.1 3024129 D 228405 CDS YP_761547.1 114800065 4289388 complement(3024688..3026091) 1 NC_008358.1 identified by similarity to GB:BAC46349.1; hypothetical protein 3026091 4289388 HNE_2869 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761547.1 3024688 R 228405 CDS YP_761548.1 114799377 4288848 3026220..3027035 1 NC_008358.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 3027035 4288848 HNE_2870 Hyphomonas neptunium ATCC 15444 RNA methyltransferase YP_761548.1 3026220 D 228405 CDS YP_761549.1 114800149 4290482 3027032..3027928 1 NC_008358.1 identified by similarity to GB:CAF24517.1; hypothetical protein 3027928 4290482 HNE_2871 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761549.1 3027032 D 228405 CDS YP_761550.1 114797875 4288665 complement(3027965..3028474) 1 NC_008358.1 putative lipoprotein 3028474 4288665 HNE_2872 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761550.1 3027965 R 228405 CDS YP_761551.1 114798601 4290504 complement(3028704..3031820) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3031820 4290504 HNE_2873 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761551.1 3028704 R 228405 CDS YP_761552.1 114799455 4289671 complement(3032384..3034009) 1 NC_008358.1 identified by similarity to SP:P23843; match to protein family HMM PF00496; oligopeptide ABC transporter periplasmic oligopeptide-binding protein 3034009 oppA 4289671 oppA Hyphomonas neptunium ATCC 15444 oligopeptide ABC transporter periplasmic oligopeptide-binding protein YP_761552.1 3032384 R 228405 CDS YP_761553.1 114800192 4290036 3034121..3034621 1 NC_008358.1 identified by similarity to GB:AAK24786.1; hypothetical protein 3034621 4290036 HNE_2875 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761553.1 3034121 D 228405 CDS YP_761554.1 114798441 4290303 complement(3034637..3035536) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 3035536 4290303 HNE_2876 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_761554.1 3034637 R 228405 CDS YP_761555.1 114799472 4290053 complement(3035570..3036508) 1 NC_008358.1 hypothetical protein 3036508 4290053 HNE_2877 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761555.1 3035570 R 228405 CDS YP_761556.1 114799348 4288118 complement(3036624..3037034) 1 NC_008358.1 identified by match to protein family HMM PF04273; match to protein family HMM TIGR01244; hypothetical protein 3037034 4288118 HNE_2878 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761556.1 3036624 R 228405 CDS YP_761557.1 114797841 4288785 3037168..3038139 1 NC_008358.1 identified by similarity to SP:P31132; match to protein family HMM PF00528; oligopeptide ABC transporter permease 3038139 oppB 4288785 oppB Hyphomonas neptunium ATCC 15444 oligopeptide ABC transporter permease YP_761557.1 3037168 D 228405 CDS YP_761558.1 114797484 4289699 3038139..3039050 1 NC_008358.1 identified by similarity to SP:P77664; match to protein family HMM PF00528; oligopeptide ABC transporter permease 3039050 oppC 4289699 oppC Hyphomonas neptunium ATCC 15444 oligopeptide ABC transporter permease YP_761558.1 3038139 D 228405 CDS YP_761559.1 114798212 4287836 3039149..3039913 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3039913 4287836 HNE_2881 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761559.1 3039149 D 228405 CDS YP_761560.1 114798851 4287815 complement(3039916..3040491) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 3040491 4287815 HNE_2882 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_761560.1 3039916 R 228405 CDS YP_761561.1 114799905 4290235 complement(3040899..3041687) 1 NC_008358.1 identified by match to protein family HMM PF01841; transglutaminase family protein 3041687 4290235 HNE_2883 Hyphomonas neptunium ATCC 15444 transglutaminase family protein YP_761561.1 3040899 R 228405 CDS YP_761562.1 114798622 4289881 3041912..3042757 1 NC_008358.1 identified by match to protein family HMM PF04228; putative neutral zinc metallopeptidase 3042757 4289881 HNE_2884 Hyphomonas neptunium ATCC 15444 putative neutral zinc metallopeptidase YP_761562.1 3041912 D 228405 CDS YP_761563.1 114799633 4290273 3042809..3044098 1 NC_008358.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein 3044098 4290273 HNE_2885 Hyphomonas neptunium ATCC 15444 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein YP_761563.1 3042809 D 228405 CDS YP_761564.1 114799239 4288302 complement(3044119..3044868) 1 NC_008358.1 identified by similarity to GB:AAK25071.1; match to protein family HMM PF01904; hypothetical protein 3044868 4288302 HNE_2886 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761564.1 3044119 R 228405 CDS YP_761565.1 114798423 4288162 complement(3044948..3045583) 1 NC_008358.1 hypothetical protein 3045583 4288162 HNE_2887 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761565.1 3044948 R 228405 CDS YP_761566.1 114797662 4288140 complement(3045686..3047686) 1 NC_008358.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 3047686 rpoD 4288140 rpoD Hyphomonas neptunium ATCC 15444 RNA polymerase sigma factor RpoD YP_761566.1 3045686 R 228405 CDS YP_761567.1 114799204 4289959 complement(3047761..3049644) 1 NC_008358.1 synthesizes RNA primers at the replication forks; DNA primase 3049644 dnaG 4289959 dnaG Hyphomonas neptunium ATCC 15444 DNA primase YP_761567.1 3047761 R 228405 CDS YP_761568.1 114799941 4290096 complement(3049783..3050568) 1 NC_008358.1 identified by similarity to GB:BAB50529.1; hypothetical protein 3050568 4290096 HNE_2890 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761568.1 3049783 R 228405 CDS YP_761569.1 114797362 4287216 complement(3050657..3051124) 1 NC_008358.1 identified by similarity to GB:CAC46898.1; match to protein family HMM PF02637; hypothetical protein 3051124 4287216 HNE_2891 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761569.1 3050657 R 228405 CDS YP_761570.1 114797494 4289709 3051313..3052473 1 NC_008358.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit 3052473 carA 4289709 carA Hyphomonas neptunium ATCC 15444 carbamoyl-phosphate synthase small subunit YP_761570.1 3051313 D 228405 CDS YP_761571.1 114798879 4287570 complement(3052527..3053153) 1 NC_008358.1 identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144; match to protein family HMM TIGR02428; 3-oxoadipate CoA-succinyl transferase subunit beta 3053153 dxnH 4287570 dxnH Hyphomonas neptunium ATCC 15444 3-oxoadipate CoA-succinyl transferase subunit beta YP_761571.1 3052527 R 228405 CDS YP_761572.1 114799898 4290227 complement(3053153..3053860) 1 NC_008358.1 identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144; match to protein family HMM TIGR02429; 3-oxoadipate CoA-succinyl transferase subunit alpha 3053860 dxnG 4290227 dxnG Hyphomonas neptunium ATCC 15444 3-oxoadipate CoA-succinyl transferase subunit alpha YP_761572.1 3053153 R 228405 CDS YP_761573.1 114799761 4288045 complement(3053879..3054391) 1 NC_008358.1 hypothetical protein 3054391 4288045 HNE_2895 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761573.1 3053879 R 228405 CDS YP_761574.1 114797317 4287522 complement(3054544..3055557) 1 NC_008358.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 3055557 4287522 HNE_2896 Hyphomonas neptunium ATCC 15444 fumarylacetoacetate hydrolase family protein YP_761574.1 3054544 R 228405 CDS YP_761575.1 114798664 4290410 complement(3055580..3056209) 1 NC_008358.1 hypothetical protein 3056209 4290410 HNE_2897 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761575.1 3055580 R 228405 CDS YP_761576.1 114800074 4289397 3055949..3056179 1 NC_008358.1 hypothetical protein 3056179 4289397 HNE_2898 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761576.1 3055949 D 228405 CDS YP_761577.1 114797531 4289492 complement(3056249..3056797) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 3056797 4289492 HNE_2899 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_761577.1 3056249 R 228405 CDS YP_761578.1 114798568 4289498 complement(3056797..3057897) 1 NC_008358.1 identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263; 4-hydroxyphenylpyruvate dioxygenase 3057897 hppD 4289498 hppD Hyphomonas neptunium ATCC 15444 4-hydroxyphenylpyruvate dioxygenase YP_761578.1 3056797 R 228405 CDS YP_761579.1 114799037 4290515 3057970..3058449 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3058449 4290515 HNE_2901 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_761579.1 3057970 D 228405 CDS YP_761580.1 114799584 4289080 3058665..3059033 1 NC_008358.1 hypothetical protein 3059033 4289080 HNE_2902 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761580.1 3058665 D 228405 CDS YP_761581.1 114800555 4289057 complement(3059132..3060070) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3060070 4289057 HNE_2903 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761581.1 3059132 R 228405 CDS YP_761582.1 114799764 4288048 complement(3060109..3060234) 1 NC_008358.1 hypothetical protein 3060234 4288048 HNE_2904 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761582.1 3060109 R 228405 CDS YP_761583.1 114798097 4288245 3060432..3060797 1 NC_008358.1 identified by similarity to SP:Q47839; match to protein family HMM PF03965; BlaI/MecI/CopY family transcriptional regulator 3060797 4288245 HNE_2905 Hyphomonas neptunium ATCC 15444 BlaI/MecI/CopY family transcriptional regulator YP_761583.1 3060432 D 228405 CDS YP_761584.1 114798924 4287868 3060794..3062914 1 NC_008358.1 identified by match to protein family HMM PF05569; M56 family peptidase 3062914 4287868 HNE_2906 Hyphomonas neptunium ATCC 15444 M56 family peptidase YP_761584.1 3060794 D 228405 CDS YP_761585.1 114800102 4289985 3062984..3063430 1 NC_008358.1 putative lipoprotein 3063430 4289985 HNE_2907 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761585.1 3062984 D 228405 CDS YP_761586.1 114799298 4289023 3063449..3064261 1 NC_008358.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 3064261 4289023 HNE_2908 Hyphomonas neptunium ATCC 15444 3-deoxy-manno-octulosonate cytidylyltransferase YP_761586.1 3063449 D 228405 CDS YP_761587.1 114798766 4289831 3064266..3064865 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 3064865 4289831 HNE_2909 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_761587.1 3064266 D 228405 CDS YP_761588.1 114797754 4288212 complement(3064870..3067335) 1 NC_008358.1 identified by similarity to SP:P37894; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; non-motile and phage-resistance protein 3067335 pleC 4288212 pleC Hyphomonas neptunium ATCC 15444 non-motile and phage-resistance protein YP_761588.1 3064870 R 228405 CDS YP_761589.1 114799938 4290093 complement(3067367..3069988) 1 NC_008358.1 identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N 3069988 pepN 4290093 pepN Hyphomonas neptunium ATCC 15444 aminopeptidase N YP_761589.1 3067367 R 228405 CDS YP_761590.1 114799384 4288506 3070095..3070460 1 NC_008358.1 hypothetical protein 3070460 4288506 HNE_2912 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761590.1 3070095 D 228405 CDS YP_761591.1 114798035 4287190 complement(3070461..3072431) 1 NC_008358.1 hypothetical protein 3072431 4287190 HNE_2913 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761591.1 3070461 R 228405 CDS YP_761592.1 114800406 4290350 complement(3072493..3073161) 1 NC_008358.1 identified by similarity to GB:AAK24451.1; hypothetical protein 3073161 4290350 HNE_2914 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761592.1 3072493 R 228405 CDS YP_761593.1 114800388 4288751 3073276..3074391 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase family protein 3074391 4288751 HNE_2915 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761593.1 3073276 D 228405 CDS YP_761594.1 114799675 4288697 complement(3074453..3074995) 1 NC_008358.1 hypothetical protein 3074995 4288697 HNE_2916 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761594.1 3074453 R 228405 CDS YP_761595.1 114798372 4290429 3075203..3076402 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 3076402 4290429 HNE_2917 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_761595.1 3075203 D 228405 CDS YP_761596.1 114798421 4288160 complement(3076442..3077062) 1 NC_008358.1 identified by similarity to PIR:C97558; putative lipoprotein 3077062 4288160 HNE_2918 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761596.1 3076442 R 228405 CDS YP_761597.1 114799224 4289593 complement(3077062..3078015) 1 NC_008358.1 identified by match to protein family HMM PF02470; virulence factor Mce-like protein 3078015 4289593 HNE_2919 Hyphomonas neptunium ATCC 15444 virulence factor Mce-like protein YP_761597.1 3077062 R 228405 CDS YP_761598.1 114799973 4290188 complement(3078030..3078797) 1 NC_008358.1 identified by similarity to GB:AAS95092.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 3078797 4290188 HNE_2920 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_761598.1 3078030 R 228405 CDS YP_761599.1 114798707 4290435 complement(3078794..3079921) 1 NC_008358.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein 3079921 4290435 HNE_2921 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761599.1 3078794 R 228405 CDS YP_761600.1 114797771 4289615 3080011..3081009 1 NC_008358.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 3081009 4289615 HNE_2922 Hyphomonas neptunium ATCC 15444 mandelate racemase/muconate lactonizing enzyme family protein YP_761600.1 3080011 D 228405 CDS YP_761601.1 114799834 4290142 complement(3081161..3081691) 1 NC_008358.1 hypothetical protein 3081691 4290142 HNE_2923 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761601.1 3081161 R 228405 CDS YP_761602.1 114798817 4289167 complement(3081786..3083699) 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3083699 4289167 HNE_2924 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_761602.1 3081786 R 228405 CDS YP_761603.1 114797058 4287026 3083821..3084438 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 3084438 4287026 HNE_2925 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761603.1 3083821 D 228405 CDS YP_761604.1 114799984 4290199 complement(3084435..3085547) 1 NC_008358.1 identified by similarity to GB:AAK23214.1; hypothetical protein 3085547 4290199 HNE_2926 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761604.1 3084435 R 228405 CDS YP_761605.1 114800348 4289282 3085651..3086067 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3086067 4289282 HNE_2927 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761605.1 3085651 D 228405 CDS YP_761606.1 114799845 4290153 3086093..3086476 1 NC_008358.1 identified by match to protein family HMM PF04241; hypothetical protein 3086476 4290153 HNE_2928 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761606.1 3086093 D 228405 CDS YP_761607.1 114798618 4289877 complement(3086458..3087072) 1 NC_008358.1 identified by similarity to SP:O57524; putative lipoprotein 3087072 4289877 HNE_2929 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761607.1 3086458 R 228405 CDS YP_761608.1 114798234 4288615 3087157..3088173 1 NC_008358.1 identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; prolyl aminopeptidase 3088173 pip 4288615 pip Hyphomonas neptunium ATCC 15444 prolyl aminopeptidase YP_761608.1 3087157 D 228405 CDS YP_761609.1 114799380 4288851 3088264..3088614 1 NC_008358.1 identified by similarity to GB:BAB98439.1; hypothetical protein 3088614 4288851 HNE_2931 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761609.1 3088264 D 228405 CDS YP_761610.1 114799725 4289143 complement(3089214..3090635) 1 NC_008358.1 identified by match to protein family HMM PF00209; sodium-dependent symporter family protein 3090635 4289143 HNE_2932 Hyphomonas neptunium ATCC 15444 sodium-dependent symporter family protein YP_761610.1 3089214 R 228405 CDS YP_761611.1 114797109 4287976 complement(3090718..3091845) 1 NC_008358.1 identified by match to protein family HMM PF01098; rod shape-determining protein RodA 3091845 rodA 4287976 rodA Hyphomonas neptunium ATCC 15444 rod shape-determining protein RodA YP_761611.1 3090718 R 228405 CDS YP_761612.1 114797905 4288093 complement(3091950..3093905) 1 NC_008358.1 identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 3093905 mrdA 4288093 mrdA Hyphomonas neptunium ATCC 15444 penicillin-binding protein 2 YP_761612.1 3091950 R 228405 CDS YP_761613.1 114798654 4290400 complement(3093902..3094453) 1 NC_008358.1 hypothetical protein 3094453 4290400 HNE_2935 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761613.1 3093902 R 228405 CDS YP_761614.1 114799374 4288845 complement(3094456..3095490) 1 NC_008358.1 identified by similarity to SP:P16926; match to protein family HMM PF04085; putative rod shape-determining protein MreC 3095490 4288845 HNE_2936 Hyphomonas neptunium ATCC 15444 putative rod shape-determining protein MreC YP_761614.1 3094456 R 228405 CDS YP_761615.1 114800181 4290025 complement(3095529..3096569) 1 NC_008358.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3096569 mreB 4290025 mreB Hyphomonas neptunium ATCC 15444 rod shape-determining protein MreB YP_761615.1 3095529 R 228405 CDS YP_761616.1 114798822 4287552 complement(3097054..3099399) 1 NC_008358.1 identified by similarity to SP:P03018; match to protein family HMM PF00580; putative DNA helicase II 3099399 4287552 HNE_2938 Hyphomonas neptunium ATCC 15444 putative DNA helicase II YP_761616.1 3097054 R 228405 CDS YP_761617.1 114798357 4290414 3099565..3101265 1 NC_008358.1 identified by match to protein family HMM PF05170; AsmA family protein 3101265 4290414 HNE_2939 Hyphomonas neptunium ATCC 15444 AsmA family protein YP_761617.1 3099565 D 228405 CDS YP_761618.1 114798129 4287597 3101340..3102068 1 NC_008358.1 hypothetical protein 3102068 4287597 HNE_2940 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761618.1 3101340 D 228405 CDS YP_761619.1 114797131 4288348 complement(3102077..3102622) 1 NC_008358.1 identified by similarity to GB:BAC94104.1; putative lipoprotein 3102622 4288348 HNE_2941 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761619.1 3102077 R 228405 CDS YP_761620.1 114799651 4290291 complement(3102708..3103814) 1 NC_008358.1 identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 3103814 4290291 HNE_2942 Hyphomonas neptunium ATCC 15444 FAD/FMN-binding oxidoreductase YP_761620.1 3102708 R 228405 CDS YP_761621.1 114798671 4289852 3103965..3104942 1 NC_008358.1 hypothetical protein 3104942 4289852 HNE_2943 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761621.1 3103965 D 228405 CDS YP_761622.1 114800016 4288808 complement(3104971..3105096) 1 NC_008358.1 hypothetical protein 3105096 4288808 HNE_2944 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761622.1 3104971 R 228405 CDS YP_761623.1 114799471 4290052 complement(3105163..3105354) 1 NC_008358.1 identified by similarity to GB:AAV95182.1; hypothetical protein 3105354 4290052 HNE_2945 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761623.1 3105163 R 228405 CDS YP_761624.1 114798059 4289534 complement(3105351..3105956) 1 NC_008358.1 hypothetical protein 3105956 4289534 HNE_2946 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761624.1 3105351 R 228405 CDS YP_761625.1 114797460 4288405 complement(3105962..3106300) 1 NC_008358.1 hypothetical protein 3106300 4288405 HNE_2947 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761625.1 3105962 R 228405 CDS YP_761626.1 114799888 4290217 complement(3106344..3106625) 1 NC_008358.1 identified by similarity to GB:AAW77844.1; hypothetical protein 3106625 4290217 HNE_2948 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761626.1 3106344 R 228405 CDS YP_761627.1 114797295 4289219 complement(3106693..3107016) 1 NC_008358.1 hypothetical protein 3107016 4289219 HNE_2949 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761627.1 3106693 R 228405 CDS YP_761628.1 114799865 4287447 complement(3107044..3108444) 1 NC_008358.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 3108444 fumC 4287447 fumC Hyphomonas neptunium ATCC 15444 fumarate hydratase YP_761628.1 3107044 R 228405 CDS YP_761629.1 114797360 4287214 complement(3109107..3109580) 1 NC_008358.1 hypothetical protein 3109580 4287214 HNE_2951 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761629.1 3109107 R 228405 CDS YP_761630.1 114798324 4287107 3109793..3110149 1 NC_008358.1 identified by match to protein family HMM PF05866; RusA family protein 3110149 4287107 HNE_2952 Hyphomonas neptunium ATCC 15444 RusA family protein YP_761630.1 3109793 D 228405 CDS YP_761631.1 114799316 4287325 complement(3110156..3111382) 1 NC_008358.1 identified by match to protein family HMM PF00067; cytochrome P450 family protein 3111382 4287325 HNE_2953 Hyphomonas neptunium ATCC 15444 cytochrome P450 family protein YP_761631.1 3110156 R 228405 CDS YP_761632.1 114800340 4289274 complement(3111473..3111925) 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3111925 4289274 HNE_2954 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761632.1 3111473 R 228405 CDS YP_761633.1 114797792 4288056 complement(3111955..3112425) 1 NC_008358.1 identified by similarity to GB:AAK24073.1; match to protein family HMM PF07031; hypothetical protein 3112425 4288056 HNE_2955 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761633.1 3111955 R 228405 CDS YP_761634.1 114798800 4289150 3112624..3113862 1 NC_008358.1 identified by match to protein family HMM PF00282; pyridoxal-dependent decarboxylase domain-containing protein 3113862 4289150 HNE_2956 Hyphomonas neptunium ATCC 15444 pyridoxal-dependent decarboxylase domain-containing protein YP_761634.1 3112624 D 228405 CDS YP_761635.1 114799809 4289826 3113956..3114372 1 NC_008358.1 hypothetical protein 3114372 4289826 HNE_2957 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761635.1 3113956 D 228405 CDS YP_761636.1 114797208 4289925 complement(3114397..3115737) 1 NC_008358.1 identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase family protein 3115737 4289925 HNE_2958 Hyphomonas neptunium ATCC 15444 type I phosphodiesterase/nucleotide pyrophosphatase family protein YP_761636.1 3114397 R 228405 CDS YP_761637.1 114797957 4289569 3115887..3117857 1 NC_008358.1 identified by match to protein family HMM PF00326; S9A/B/C family peptidase 3117857 4289569 HNE_2959 Hyphomonas neptunium ATCC 15444 S9A/B/C family peptidase YP_761637.1 3115887 D 228405 CDS YP_761638.1 114799209 4289578 3117985..3118656 1 NC_008358.1 identified by match to protein family HMM PF02798; glutathione S-transferase 3118656 4289578 HNE_2960 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761638.1 3117985 D 228405 CDS YP_761639.1 114799928 4290082 complement(3118681..3119688) 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409; short chain dehydrogenase/reductase family oxidoreductase 3119688 4290082 HNE_2961 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761639.1 3118681 R 228405 CDS YP_761640.1 114797630 4288652 complement(3119799..3120281) 1 NC_008358.1 hypothetical protein 3120281 4288652 HNE_2962 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761640.1 3119799 R 228405 CDS YP_761641.1 114798412 4289753 complement(3120271..3120915) 1 NC_008358.1 hypothetical protein 3120915 4289753 HNE_2963 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761641.1 3120271 R 228405 CDS YP_761642.1 114797624 4288646 3121490..3122101 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3122101 4288646 HNE_2965 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761642.1 3121490 D 228405 CDS YP_761643.1 114798753 4287988 complement(3122104..3123948) 1 NC_008358.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3123948 uvrC 4287988 uvrC Hyphomonas neptunium ATCC 15444 excinuclease ABC subunit C YP_761643.1 3122104 R 228405 CDS YP_761644.1 114797434 4287171 complement(3124031..3124540) 1 NC_008358.1 hypothetical protein 3124540 4287171 HNE_2967 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761644.1 3124031 R 228405 CDS YP_761645.1 114797936 4287910 3124579..3125790 1 NC_008358.1 identified by similarity to SP:Q02635; match to protein family HMM PF00155; aspartate aminotransferase 3125790 aatA 4287910 aatA Hyphomonas neptunium ATCC 15444 aspartate aminotransferase YP_761645.1 3124579 D 228405 CDS YP_761646.1 114797861 4287132 3125912..3126376 1 NC_008358.1 identified by match to protein family HMM PF00210; DNA protection protein 3126376 dps 4287132 dps Hyphomonas neptunium ATCC 15444 DNA protection protein YP_761646.1 3125912 D 228405 CDS YP_761647.1 114800239 4287474 complement(3126373..3127338) 1 NC_008358.1 identified by match to protein family HMM PF07859; alpha/beta fold family hydrolase 3127338 4287474 HNE_2970 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761647.1 3126373 R 228405 CDS YP_761648.1 114798137 4287605 3127526..3128353 1 NC_008358.1 hypothetical protein 3128353 4287605 HNE_2971 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761648.1 3127526 D 228405 CDS YP_761649.1 114797417 4287683 3128407..3130335 1 NC_008358.1 hypothetical protein 3130335 4287683 HNE_2972 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761649.1 3128407 D 228405 CDS YP_761650.1 114799877 4287460 complement(3130606..3131517) 1 NC_008358.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3131517 4287460 HNE_2973 Hyphomonas neptunium ATCC 15444 LysR family transcriptional regulator YP_761650.1 3130606 R 228405 CDS YP_761651.1 114800460 4288202 3131673..3132455 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein 3132455 4288202 HNE_2974 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family protein YP_761651.1 3131673 D 228405 CDS YP_761652.1 114799638 4290278 complement(3133304..3134278) 1 NC_008358.1 identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 3134278 4290278 HNE_2975 Hyphomonas neptunium ATCC 15444 zinc-binding dehydrogenase family oxidoreductase YP_761652.1 3133304 R 228405 CDS YP_761653.1 114798413 4288152 complement(3134275..3135315) 1 NC_008358.1 identified by match to protein family HMM PF07859; alpha/beta hydrolase fold family protein 3135315 4288152 HNE_2976 Hyphomonas neptunium ATCC 15444 alpha/beta hydrolase fold family protein YP_761653.1 3134275 R 228405 CDS YP_761654.1 114797609 4288321 complement(3135402..3136088) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3136088 4288321 HNE_2977 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761654.1 3135402 R 228405 CDS YP_761655.1 114798893 4287584 complement(3136215..3136847) 1 NC_008358.1 identified by match to protein family HMM PF03458; hypothetical protein 3136847 4287584 HNE_2978 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761655.1 3136215 R 228405 CDS YP_761656.1 114798367 4290424 3136988..3139171 1 NC_008358.1 identified by match to protein family HMM PF07693; KAP P-loop domain-containing protein 3139171 4290424 HNE_2979 Hyphomonas neptunium ATCC 15444 KAP P-loop domain-containing protein YP_761656.1 3136988 D 228405 CDS YP_761657.1 114797595 4287000 complement(3139245..3139922) 1 NC_008358.1 hypothetical protein 3139922 4287000 HNE_2980 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761657.1 3139245 R 228405 CDS YP_761658.1 114797224 4289941 complement(3139934..3140641) 1 NC_008358.1 hypothetical protein 3140641 4289941 HNE_2981 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761658.1 3139934 R 228405 CDS YP_761659.1 114798883 4287574 complement(3140684..3141394) 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 3141394 4287574 HNE_2982 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_761659.1 3140684 R 228405 CDS YP_761660.1 114798584 4289514 complement(3141405..3142736) 1 NC_008358.1 identified by similarity to SP:P49326; match to protein family HMM PF00743; monooxygenase flavin-binding family protein 3142736 4289514 HNE_2983 Hyphomonas neptunium ATCC 15444 monooxygenase flavin-binding family protein YP_761660.1 3141405 R 228405 CDS YP_761661.1 114797200 4287071 3142703..3143341 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3143341 4287071 HNE_2984 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761661.1 3142703 D 228405 CDS YP_761662.1 114799716 4289134 3143338..3143766 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3143766 4289134 HNE_2985 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761662.1 3143338 D 228405 CDS YP_761663.1 114800300 4287945 3143878..3144342 1 NC_008358.1 identified by similarity to GB:AAK24429.1; putative lipoprotein 3144342 4287945 HNE_2986 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761663.1 3143878 D 228405 CDS YP_761664.1 114798761 4287996 complement(3144352..3145239) 1 NC_008358.1 identified by similarity to GB:AAM40707.1; putative lipoprotein 3145239 4287996 HNE_2987 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761664.1 3144352 R 228405 CDS YP_761665.1 114799148 4287802 complement(3145252..3148386) 1 NC_008358.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3148386 4287802 HNE_2988 Hyphomonas neptunium ATCC 15444 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_761665.1 3145252 R 228405 CDS YP_761666.1 114797590 4286995 3148576..3149682 1 NC_008358.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 3149682 4286995 HNE_2989 Hyphomonas neptunium ATCC 15444 glycosyl transferase family protein YP_761666.1 3148576 D 228405 CDS YP_761667.1 114799207 4289576 complement(3149685..3150782) 1 NC_008358.1 identified by similarity to SP:P39665; putative phosphate ABC transporter periplasmic phosphate-binding protein 3150782 4289576 HNE_2990 Hyphomonas neptunium ATCC 15444 putative phosphate ABC transporter periplasmic phosphate-binding protein YP_761667.1 3149685 R 228405 CDS YP_761668.1 114800350 4289284 3151052..3152248 1 NC_008358.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; decarboxylase 3152248 4289284 HNE_2991 Hyphomonas neptunium ATCC 15444 decarboxylase YP_761668.1 3151052 D 228405 CDS YP_761669.1 114799484 4289175 complement(3152191..3153063) 1 NC_008358.1 identified by similarity to SP:P22634; match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 3153063 murI 4289175 murI Hyphomonas neptunium ATCC 15444 glutamate racemase YP_761669.1 3152191 R 228405 CDS YP_761670.1 114798774 4289839 3153174..3153497 1 NC_008358.1 hypothetical protein 3153497 4289839 HNE_2993 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761670.1 3153174 D 228405 CDS YP_761671.1 114798864 4289720 complement(3153502..3153933) 1 NC_008358.1 identified by similarity to GB:CAE36316.1; hypothetical protein 3153933 4289720 HNE_2994 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761671.1 3153502 R 228405 CDS YP_761672.1 114799863 4287445 3154082..3156466 1 NC_008358.1 identified by similarity to SP:Q59637; pyruvate dehydrogenase E1 component-like protein 3156466 4287445 HNE_2995 Hyphomonas neptunium ATCC 15444 pyruvate dehydrogenase E1 component-like protein YP_761672.1 3154082 D 228405 CDS YP_761673.1 114797530 4289491 3156519..3158411 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3158411 4289491 HNE_2996 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_761673.1 3156519 D 228405 CDS YP_761674.1 114799306 4287315 complement(3158427..3159269) 1 NC_008358.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 3159269 4287315 HNE_2997 Hyphomonas neptunium ATCC 15444 carbon-nitrogen family hydrolase YP_761674.1 3158427 R 228405 CDS YP_761675.1 114798798 4287781 complement(3159286..3160269) 1 NC_008358.1 identified by match to protein family HMM PF04371; peptidyl-arginine deiminase family protein 3160269 4287781 HNE_2998 Hyphomonas neptunium ATCC 15444 peptidyl-arginine deiminase family protein YP_761675.1 3159286 R 228405 CDS YP_761676.1 114797805 4288069 complement(3160362..3163508) 1 NC_008358.1 identified by similarity to SP:P38370; outer membrane receptor (OMR) family protein 3163508 4288069 HNE_2999 Hyphomonas neptunium ATCC 15444 outer membrane receptor (OMR) family protein YP_761676.1 3160362 R 228405 CDS YP_761677.1 114797402 4287668 3163770..3165347 1 NC_008358.1 identified by similarity to GB:AAK22196.1; hypothetical protein 3165347 4287668 HNE_3000 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761677.1 3163770 D 228405 CDS YP_761678.1 114798944 4289643 complement(3165359..3166006) 1 NC_008358.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 3166006 msrA1 4289643 msrA1 Hyphomonas neptunium ATCC 15444 methionine-S-sulfoxide reductase YP_761678.1 3165359 R 228405 CDS YP_761679.1 114797739 4288276 complement(3166169..3168223) 1 NC_008358.1 identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073; penicillin-binding protein 1C 3168223 pbpC 4288276 pbpC Hyphomonas neptunium ATCC 15444 penicillin-binding protein 1C YP_761679.1 3166169 R 228405 CDS YP_761680.1 114800482 4289435 complement(3168265..3173262) 1 NC_008358.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703; alpha-2-macroglobulin family protein 3173262 4289435 HNE_3003 Hyphomonas neptunium ATCC 15444 alpha-2-macroglobulin family protein YP_761680.1 3168265 R 228405 CDS YP_761681.1 114799475 4290056 complement(3173349..3174212) 1 NC_008358.1 identified by similarity to GB:AAK23039.1; match to protein family HMM PF01370; hypothetical protein 3174212 4290056 HNE_3004 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761681.1 3173349 R 228405 CDS YP_761682.1 114799457 4289673 3174276..3174950 1 NC_008358.1 identified by match to protein family HMM PF00515; hypothetical protein 3174950 4289673 HNE_3005 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761682.1 3174276 D 228405 CDS YP_761683.1 114799126 4289921 complement(3174969..3175394) 1 NC_008358.1 putative lipoprotein 3175394 4289921 HNE_3006 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761683.1 3174969 R 228405 CDS YP_761684.1 114800113 4289996 complement(3175555..3176925) 1 NC_008358.1 identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 3176925 4289996 HNE_3007 Hyphomonas neptunium ATCC 15444 cytosol aminopeptidase YP_761684.1 3175555 R 228405 CDS YP_761685.1 114797147 4288364 3177046..3177912 1 NC_008358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3177912 4288364 HNE_3008 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761685.1 3177046 D 228405 CDS YP_761686.1 114798130 4287598 complement(3177982..3179001) 1 NC_008358.1 identified by match to protein family HMM PF00482; type II secretion system protein 3179001 4287598 HNE_3009 Hyphomonas neptunium ATCC 15444 type II secretion system protein YP_761686.1 3177982 R 228405 CDS YP_761687.1 114798049 4289524 complement(3179016..3180035) 1 NC_008358.1 identified by similarity to GB:AAF40196.1; match to protein family HMM PF00482; secretion system protein 3180035 4289524 HNE_3010 Hyphomonas neptunium ATCC 15444 secretion system protein YP_761687.1 3179016 R 228405 CDS YP_761688.1 114800387 4288750 complement(3180047..3181534) 1 NC_008358.1 identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437; pilus assembly protein CpaF 3181534 cpaF 4288750 cpaF Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaF YP_761688.1 3180047 R 228405 CDS YP_761689.1 114797644 4289038 complement(3181560..3182966) 1 NC_008358.1 identified by similarity to GB:AAF40194.1; pilus assembly protein CpaE 3182966 4289038 HNE_3012 Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaE YP_761689.1 3181560 R 228405 CDS YP_761690.1 114798148 4290381 complement(3183001..3183711) 1 NC_008358.1 identified by similarity to GB:AAF40193.1; match to protein family HMM TIGR02522; pilus assembly protein CpaD 3183711 4290381 HNE_3013 Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaD YP_761690.1 3183001 R 228405 CDS YP_761691.1 114799376 4288847 complement(3183724..3185331) 1 NC_008358.1 identified by similarity to GB:AAF40192.1; match to protein family HMM PF00263; match to protein family HMM PF04972; pilus assembly protein CpaC 3185331 4288847 HNE_3014 Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaC YP_761691.1 3183724 R 228405 CDS YP_761692.1 114799072 4287726 complement(3185334..3186179) 1 NC_008358.1 identified by similarity to GB:AAF40191.1; match to protein family HMM PF06981; pilus assembly protein CpaB 3186179 4287726 HNE_3015 Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaB YP_761692.1 3185334 R 228405 CDS YP_761693.1 114800034 4288826 complement(3186278..3186793) 1 NC_008358.1 identified by similarity to GB:AAF40190.1; match to protein family HMM PF01478; pilus assembly protein CpaA 3186793 4288826 HNE_3016 Hyphomonas neptunium ATCC 15444 pilus assembly protein CpaA YP_761693.1 3186278 R 228405 CDS YP_761694.1 114797760 4288218 complement(3186944..3187117) 1 NC_008358.1 identified by match to protein family HMM PF04964; flp/Fap pilus protein 3187117 4288218 HNE_3017 Hyphomonas neptunium ATCC 15444 flp/Fap pilus protein YP_761694.1 3186944 R 228405 CDS YP_761695.1 114798749 4287984 3187425..3187868 1 NC_008358.1 identified by similarity to GB:BAC46709.1; hypothetical protein 3187868 4287984 HNE_3018 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761695.1 3187425 D 228405 CDS YP_761696.1 114797939 4287913 3187981..3188547 1 NC_008358.1 identified by match to protein family HMM PF07811; TadE-like protein 3188547 4287913 HNE_3019 Hyphomonas neptunium ATCC 15444 TadE-like protein YP_761696.1 3187981 D 228405 CDS YP_761697.1 114798948 4289647 3188544..3189161 1 NC_008358.1 Flp/Fap pilin component 3189161 4289647 HNE_3020 Hyphomonas neptunium ATCC 15444 Flp/Fap pilin component YP_761697.1 3188544 D 228405 CDS YP_761698.1 114799959 4290114 complement(3189158..3190645) 1 NC_008358.1 identified by similarity to GB:AAK24916.1; hypothetical protein 3190645 4290114 HNE_3021 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761698.1 3189158 R 228405 CDS YP_761699.1 114797447 4288567 complement(3190739..3192163) 1 NC_008358.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3192163 murC 4288567 murC Hyphomonas neptunium ATCC 15444 UDP-N-acetylmuramate--L-alanine ligase YP_761699.1 3190739 R 228405 CDS YP_761700.1 114798779 4289844 complement(3192179..3192535) 1 NC_008358.1 hypothetical protein 3192535 4289844 HNE_3023 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761700.1 3192179 R 228405 CDS YP_761701.1 114799346 4288116 complement(3192532..3193632) 1 NC_008358.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3193632 murG 4288116 murG Hyphomonas neptunium ATCC 15444 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_761701.1 3192532 R 228405 CDS YP_761702.1 114799677 4288699 complement(3193625..3194776) 1 NC_008358.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 3194776 4288699 HNE_3025 Hyphomonas neptunium ATCC 15444 cell cycle protein FtsW YP_761702.1 3193625 R 228405 CDS YP_761703.1 114798168 4287657 complement(3194773..3196188) 1 NC_008358.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3196188 murD 4287657 murD Hyphomonas neptunium ATCC 15444 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_761703.1 3194773 R 228405 CDS YP_761704.1 114797628 4288650 complement(3196199..3197392) 1 NC_008358.1 identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase 3197392 mraY 4288650 mraY Hyphomonas neptunium ATCC 15444 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_761704.1 3196199 R 228405 CDS YP_761705.1 114799693 4289111 complement(3197392..3198828) 1 NC_008358.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 3198828 murF 4289111 murF Hyphomonas neptunium ATCC 15444 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_761705.1 3197392 R 228405 CDS YP_761706.1 114798974 4288249 complement(3198825..3200261) 1 NC_008358.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase 3200261 murE 4288249 murE Hyphomonas neptunium ATCC 15444 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase YP_761706.1 3198825 R 228405 CDS YP_761707.1 114798338 4288621 complement(3200258..3201901) 1 NC_008358.1 identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717; putative penicillin-binding protein 2 3201901 4288621 HNE_3030 Hyphomonas neptunium ATCC 15444 putative penicillin-binding protein 2 YP_761707.1 3200258 R 228405 CDS YP_761708.1 114797112 4287140 complement(3201898..3202290) 1 NC_008358.1 putative cell division protein FtsL 3202290 4287140 HNE_3031 Hyphomonas neptunium ATCC 15444 putative cell division protein FtsL YP_761708.1 3201898 R 228405 CDS YP_761709.1 114799717 4289135 complement(3202287..3203315) 1 NC_008358.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 3203315 mraW 4289135 mraW Hyphomonas neptunium ATCC 15444 S-adenosyl-methyltransferase MraW YP_761709.1 3202287 R 228405 CDS YP_761710.1 114800447 4288189 complement(3203315..3203812) 1 NC_008358.1 putative MraZ protein 3203812 4288189 HNE_3033 Hyphomonas neptunium ATCC 15444 putative MraZ protein YP_761710.1 3203315 R 228405 CDS YP_761711.1 114799646 4290286 complement(3204224..3204766) 1 NC_008358.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778; alkylhydroperoxidase 3204766 4290286 HNE_3034 Hyphomonas neptunium ATCC 15444 alkylhydroperoxidase YP_761711.1 3204224 R 228405 CDS YP_761712.1 114797286 4289210 complement(3204895..3205452) 1 NC_008358.1 identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578; alkylhydroperoxide reductase C 3205452 ahpC 4289210 ahpC Hyphomonas neptunium ATCC 15444 alkylhydroperoxide reductase C YP_761712.1 3204895 R 228405 CDS YP_761713.1 114800072 4289395 3205566..3206495 1 NC_008358.1 identified by similarity to SP:P11721; match to protein family HMM PF00126; match to protein family HMM PF03466; putative oxidative stress regulatory protein OxyR 3206495 4289395 HNE_3036 Hyphomonas neptunium ATCC 15444 putative oxidative stress regulatory protein OxyR YP_761713.1 3205566 D 228405 CDS YP_761714.1 114800086 4289969 3206624..3207817 1 NC_008358.1 identified by similarity to GB:AAK23460.1; hypothetical protein 3207817 4289969 HNE_3037 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761714.1 3206624 D 228405 CDS YP_761715.1 114798495 4287748 3207909..3208892 1 NC_008358.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047; MarR family transcriptional regulator 3208892 4287748 HNE_3038 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_761715.1 3207909 D 228405 CDS YP_761716.1 114797505 4287634 complement(3208917..3210392) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator 3210392 4287634 HNE_3039 Hyphomonas neptunium ATCC 15444 sigma-54 dependent DNA-binding response regulator YP_761716.1 3208917 R 228405 CDS YP_761717.1 114799704 4289122 3210675..3212183 1 NC_008358.1 identified by match to protein family HMM PF01384; phosphate transporter family protein 3212183 4289122 HNE_3040 Hyphomonas neptunium ATCC 15444 phosphate transporter family protein YP_761717.1 3210675 D 228405 CDS YP_761718.1 114798958 4287415 3212391..3212768 1 NC_008358.1 hypothetical protein 3212768 4287415 HNE_3041 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761718.1 3212391 D 228405 CDS YP_761719.1 114797702 4289352 complement(3213821..3213985) 1 NC_008358.1 hypothetical protein 3213985 4289352 HNE_3042 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761719.1 3213821 R 228405 CDS YP_761720.1 114800542 4288887 complement(3214073..3214309) 1 NC_008358.1 hypothetical protein 3214309 4288887 HNE_3043 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761720.1 3214073 R 228405 CDS YP_761721.1 114799356 4288126 complement(3214753..3215103) 1 NC_008358.1 identified by similarity to GB:BAD64522.1; hypothetical protein 3215103 4288126 HNE_3044 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761721.1 3214753 R 228405 CDS YP_761722.1 114800055 4289378 3215337..3217382 1 NC_008358.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3217382 uvrB 4289378 uvrB Hyphomonas neptunium ATCC 15444 excinuclease ABC subunit B YP_761722.1 3215337 D 228405 CDS YP_761723.1 114797872 4288662 complement(3217688..3218443) 1 NC_008358.1 hypothetical protein 3218443 4288662 HNE_3047 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761723.1 3217688 R 228405 CDS YP_761724.1 114798648 4290394 3218636..3218938 1 NC_008358.1 hypothetical protein 3218938 4290394 HNE_3048 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761724.1 3218636 D 228405 CDS YP_761725.1 114799849 4287431 3219040..3219960 1 NC_008358.1 hypothetical protein 3219960 4287431 HNE_3049 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761725.1 3219040 D 228405 CDS YP_761726.1 114797059 4287027 3220484..3222820 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3222820 4287027 HNE_3050 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_761726.1 3220484 D 228405 CDS YP_761727.1 114798285 4287226 complement(3222945..3223652) 1 NC_008358.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3223652 4287226 HNE_3051 Hyphomonas neptunium ATCC 15444 TetR family transcriptional regulator YP_761727.1 3222945 R 228405 CDS YP_761728.1 114799036 4290514 3223829..3224704 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3224704 4290514 HNE_3052 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761728.1 3223829 D 228405 CDS YP_761729.1 114800311 4287956 3224701..3225987 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 3225987 4287956 HNE_3053 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_761729.1 3224701 D 228405 CDS YP_761730.1 114797891 4288079 3225965..3226513 1 NC_008358.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3226513 4288079 HNE_3054 Hyphomonas neptunium ATCC 15444 thioesterase family protein YP_761730.1 3225965 D 228405 CDS YP_761731.1 114798608 4289867 complement(3226540..3227166) 1 NC_008358.1 putative lipoprotein 3227166 4289867 HNE_3055 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761731.1 3226540 R 228405 CDS YP_761732.1 114798552 4287396 complement(3227298..3228245) 1 NC_008358.1 identified by similarity to SP:P36880; match to protein family HMM PF01061; ABC transporter permease 3228245 4287396 HNE_3056 Hyphomonas neptunium ATCC 15444 ABC transporter permease YP_761732.1 3227298 R 228405 CDS YP_761733.1 114799479 4289170 3228374..3228925 1 NC_008358.1 identified by match to protein family HMM PF07750; GcrA cell cycle regulator 3228925 gcrA 4289170 gcrA Hyphomonas neptunium ATCC 15444 GcrA cell cycle regulator YP_761733.1 3228374 D 228405 CDS YP_761734.1 114800483 4289436 complement(3229002..3230381) 1 NC_008358.1 identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3230381 4289436 HNE_3058 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_761734.1 3229002 R 228405 CDS YP_761735.1 114797724 4289239 3230592..3232061 1 NC_008358.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 3232061 4289239 HNE_3059 Hyphomonas neptunium ATCC 15444 RND efflux system outer membrane lipoprotein YP_761735.1 3230592 D 228405 CDS YP_761736.1 114797172 4287042 3232067..3233335 1 NC_008358.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3233335 4287042 HNE_3060 Hyphomonas neptunium ATCC 15444 RND family efflux transporter MFP subunit YP_761736.1 3232067 D 228405 CDS YP_761737.1 114797926 4287900 3233332..3236553 1 NC_008358.1 identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 3236553 4287900 HNE_3061 Hyphomonas neptunium ATCC 15444 AcrB/AcrD/AcrF family protein YP_761737.1 3233332 D 228405 CDS YP_761738.1 114799171 4288388 3236639..3238861 1 NC_008358.1 identified by similarity to GB:BAA24495.1; match to protein family HMM PF01431; match to protein family HMM PF05649; M13 family peptidase 3238861 4288388 HNE_3062 Hyphomonas neptunium ATCC 15444 M13 family peptidase YP_761738.1 3236639 D 228405 CDS YP_761739.1 114800006 4288798 3238996..3239325 1 NC_008358.1 hypothetical protein 3239325 4288798 HNE_3063 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761739.1 3238996 D 228405 CDS YP_761740.1 114797596 4288308 3239431..3240036 1 NC_008358.1 identified by similarity to SP:P40581; match to protein family HMM PF00255; glutathione peroxidase 3240036 4288308 HNE_3064 Hyphomonas neptunium ATCC 15444 glutathione peroxidase YP_761740.1 3239431 D 228405 CDS YP_761741.1 114798386 4288378 3240139..3241320 1 NC_008358.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase/thiolase family protein 3241320 4288378 HNE_3065 Hyphomonas neptunium ATCC 15444 acetyl-CoA acetyltransferase/thiolase family protein YP_761741.1 3240139 D 228405 CDS YP_761742.1 114798997 4288429 3241329..3241952 1 NC_008358.1 identified by similarity to GB:BAC50874.1; hypothetical protein 3241952 4288429 HNE_3066 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761742.1 3241329 D 228405 CDS YP_761743.1 114797449 4288569 3241971..3243053 1 NC_008358.1 identified by similarity to PIR:D98229; hypothetical protein 3243053 4288569 HNE_3067 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761743.1 3241971 D 228405 CDS YP_761744.1 114798211 4287835 complement(3243090..3244175) 1 NC_008358.1 identified by match to protein family HMM PF00144; beta-lactamase 3244175 4287835 HNE_3068 Hyphomonas neptunium ATCC 15444 beta-lactamase YP_761744.1 3243090 R 228405 CDS YP_761745.1 114799504 4288897 complement(3244228..3244884) 1 NC_008358.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 3244884 4288897 HNE_3069 Hyphomonas neptunium ATCC 15444 AsnC family transcriptional regulator YP_761745.1 3244228 R 228405 CDS YP_761746.1 114800274 4287919 3244853..3248314 1 NC_008358.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3248314 4287919 HNE_3070 Hyphomonas neptunium ATCC 15444 indolepyruvate ferredoxin oxidoreductase YP_761746.1 3244853 D 228405 CDS YP_761747.1 114797671 4288149 complement(3248406..3248738) 1 NC_008358.1 hypothetical protein 3248738 4288149 HNE_3071 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761747.1 3248406 R 228405 CDS YP_761748.1 114798391 4288383 complement(3248802..3250394) 1 NC_008358.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 3250394 lysK 4288383 lysK Hyphomonas neptunium ATCC 15444 lysyl-tRNA synthetase YP_761748.1 3248802 R 228405 CDS YP_761749.1 114799146 4287800 3250554..3251003 1 NC_008358.1 hypothetical protein 3251003 4287800 HNE_3073 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761749.1 3250554 D 228405 CDS YP_761750.1 114800333 4289267 3251007..3251234 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 3251234 4289267 HNE_3074 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_761750.1 3251007 D 228405 CDS YP_761751.1 114799695 4289113 3251298..3251516 1 NC_008358.1 identified by match to protein family HMM PF04324; BFD/(2Fe-2S)-binding domain-containing protein 3251516 4289113 HNE_3075 Hyphomonas neptunium ATCC 15444 BFD/(2Fe-2S)-binding domain-containing protein YP_761751.1 3251298 D 228405 CDS YP_761752.1 114797328 4289406 3251720..3252205 1 NC_008358.1 identified by similarity to SP:P11056; match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin 3252205 bfr 4289406 bfr Hyphomonas neptunium ATCC 15444 bacterioferritin YP_761752.1 3251720 D 228405 CDS YP_761753.1 114800427 4290371 3252303..3253205 1 NC_008358.1 identified by match to protein family HMM PF04402; hypothetical protein 3253205 4290371 HNE_3077 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761753.1 3252303 D 228405 CDS YP_761754.1 114798832 4287562 3253377..3253751 1 NC_008358.1 identified by similarity to OMNI:NTL01AT1976; hypothetical protein 3253751 4287562 HNE_3078 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761754.1 3253377 D 228405 CDS YP_761755.1 114798498 4287751 complement(3253828..3254964) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 3254964 4287751 HNE_3079 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761755.1 3253828 R 228405 CDS YP_761756.1 114797732 4288269 complement(3255025..3256239) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 3256239 4288269 HNE_3080 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761756.1 3255025 R 228405 CDS YP_761757.1 114799896 4290225 complement(3256392..3256835) 1 NC_008358.1 hypothetical protein 3256835 4290225 HNE_3081 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761757.1 3256392 R 228405 CDS YP_761758.1 114798846 4287810 3256990..3258600 1 NC_008358.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase family protein 3258600 4287810 HNE_3082 Hyphomonas neptunium ATCC 15444 deoxyribodipyrimidine photolyase family protein YP_761758.1 3256990 D 228405 CDS YP_761759.1 114797586 4286991 3259246..3259551 1 NC_008358.1 hypothetical protein 3259551 4286991 HNE_3083 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761759.1 3259246 D 228405 CDS YP_761760.1 114797448 4288568 complement(3259667..3260194) 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 3260194 4288568 HNE_3084 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_761760.1 3259667 R 228405 CDS YP_761761.1 114799495 4289186 3260814..3261560 1 NC_008358.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 3261560 4289186 HNE_3085 Hyphomonas neptunium ATCC 15444 two-component response regulator YP_761761.1 3260814 D 228405 CDS YP_761762.1 114800281 4287926 complement(3261574..3262566) 1 NC_008358.1 identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229; putative sensory box sensor histidine kinase 3262566 4287926 HNE_3086 Hyphomonas neptunium ATCC 15444 putative sensory box sensor histidine kinase YP_761762.1 3261574 R 228405 CDS YP_761763.1 114797416 4287682 3262742..3263701 1 NC_008358.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; K+-dependent Na+/Ca+ exchanger-like protein 3263701 4287682 HNE_3087 Hyphomonas neptunium ATCC 15444 K+-dependent Na+/Ca+ exchanger-like protein YP_761763.1 3262742 D 228405 CDS YP_761764.1 114799961 4290116 3263667..3264614 1 NC_008358.1 identified by match to protein family HMM PF00892; hypothetical protein 3264614 4290116 HNE_3088 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761764.1 3263667 D 228405 CDS YP_761765.1 114799388 4288510 3264659..3266527 1 NC_008358.1 identified by similarity to SP:P33116; match to protein family HMM PF00005; ABC transporter permease/ATP-binding protein 3266527 4288510 HNE_3089 Hyphomonas neptunium ATCC 15444 ABC transporter permease/ATP-binding protein YP_761765.1 3264659 D 228405 CDS YP_761766.1 114798780 4289845 3266720..3268330 1 NC_008358.1 putative lipoprotein 3268330 4289845 HNE_3090 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761766.1 3266720 D 228405 CDS YP_761767.1 114800499 4289452 complement(3268335..3269219) 1 NC_008358.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3269219 ilvE 4289452 ilvE Hyphomonas neptunium ATCC 15444 branched-chain amino acid aminotransferase YP_761767.1 3268335 R 228405 CDS YP_761768.1 114799516 4288909 3269273..3269737 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3269737 4288909 HNE_3092 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_761768.1 3269273 D 228405 CDS YP_761769.1 114798914 4288500 3269748..3270437 1 NC_008358.1 identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator OmpR 3270437 ompR 4288500 ompR Hyphomonas neptunium ATCC 15444 DNA-binding response regulator OmpR YP_761769.1 3269748 D 228405 CDS YP_761770.1 114798347 4288630 3270446..3271741 1 NC_008358.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3271741 4288630 HNE_3094 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_761770.1 3270446 D 228405 CDS YP_761771.1 114798533 4288098 3271774..3273315 1 NC_008358.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 3273315 4288098 HNE_3095 Hyphomonas neptunium ATCC 15444 carbon-nitrogen family hydrolase YP_761771.1 3271774 D 228405 CDS YP_761772.1 114798185 4288003 complement(3273319..3273609) 1 NC_008358.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 3273609 phhB 4288003 phhB Hyphomonas neptunium ATCC 15444 pterin-4-alpha-carbinolamine dehydratase YP_761772.1 3273319 R 228405 CDS YP_761773.1 114798517 4290321 complement(3273613..3274206) 1 NC_008358.1 putative lipoprotein 3274206 4290321 HNE_3097 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761773.1 3273613 R 228405 CDS YP_761774.1 114797545 4287380 complement(3274193..3274879) 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR02247; putative phosphatase 3274879 4287380 HNE_3098 Hyphomonas neptunium ATCC 15444 putative phosphatase YP_761774.1 3274193 R 228405 CDS YP_761775.1 114800537 4288882 3274957..3275874 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 3275874 4288882 HNE_3099 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761775.1 3274957 D 228405 CDS YP_761776.1 114799482 4289173 complement(3275958..3276335) 1 NC_008358.1 hypothetical protein 3276335 4289173 HNE_3100 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761776.1 3275958 R 228405 CDS YP_761777.1 114799815 4290123 3276686..3277624 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne5, transposase 3277624 4290123 HNE_3101 Hyphomonas neptunium ATCC 15444 ISHne5, transposase YP_761777.1 3276686 D 228405 CDS YP_761778.1 114797212 4289929 complement(3277883..3279016) 1 NC_008358.1 identified by match to protein family HMM PF00912; match to protein family HMM TIGR02070; monofunctional biosynthetic peptidoglycan transglycosylase 3279016 mtgA 4289929 mtgA Hyphomonas neptunium ATCC 15444 monofunctional biosynthetic peptidoglycan transglycosylase YP_761778.1 3277883 R 228405 CDS YP_761779.1 114799749 4288033 complement(3279025..3280152) 1 NC_008358.1 identified by match to protein family HMM PF00037; putative iron-sulfur cluster binding protein 3280152 4288033 HNE_3103 Hyphomonas neptunium ATCC 15444 putative iron-sulfur cluster binding protein YP_761779.1 3279025 R 228405 CDS YP_761780.1 114799214 4289583 complement(3280133..3280810) 1 NC_008358.1 identified by match to protein family HMM PF00043; glutathione S-transferase 3280810 4289583 HNE_3104 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761780.1 3280133 R 228405 CDS YP_761781.1 114799217 4289586 complement(3280878..3285602) 1 NC_008358.1 identified by match to protein family HMM PF05088; glutamate dehydrogenase 3285602 4289586 HNE_3105 Hyphomonas neptunium ATCC 15444 glutamate dehydrogenase YP_761781.1 3280878 R 228405 CDS YP_761782.1 114798684 4289865 complement(3285977..3287065) 1 NC_008358.1 identified by match to protein family HMM PF01594; hypothetical protein 3287065 4289865 HNE_3106 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761782.1 3285977 R 228405 CDS YP_761783.1 114800059 4289382 3287214..3288770 1 NC_008358.1 identified by similarity to GB:CAC45536.1; match to protein family HMM PF05872; hypothetical protein 3288770 4289382 HNE_3107 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761783.1 3287214 D 228405 CDS YP_761784.1 114800227 4289001 3288767..3288970 1 NC_008358.1 putative lipoprotein 3288970 4289001 HNE_3108 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761784.1 3288767 D 228405 CDS YP_761785.1 114798106 4289601 3289091..3290521 1 NC_008358.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 3290521 4289601 HNE_3109 Hyphomonas neptunium ATCC 15444 aldehyde dehydrogenase family protein YP_761785.1 3289091 D 228405 CDS YP_761786.1 114799128 4289923 3290606..3291220 1 NC_008358.1 identified by match to protein family HMM PF02798; glutathione S-transferase 3291220 4289923 HNE_3110 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761786.1 3290606 D 228405 CDS YP_761787.1 114798153 4290386 3291418..3291990 1 NC_008358.1 identified by similarity to GB:AAK22112.1; putative lipoprotein 3291990 4290386 HNE_3111 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761787.1 3291418 D 228405 CDS YP_761788.1 114798945 4289644 complement(3292012..3293583) 1 NC_008358.1 identified by match to protein family HMM PF00028; cadherin domain-containing protein 3293583 4289644 HNE_3112 Hyphomonas neptunium ATCC 15444 cadherin domain-containing protein YP_761788.1 3292012 R 228405 CDS YP_761789.1 114799340 4290174 3293840..3295039 1 NC_008358.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 3295039 4290174 HNE_3113 Hyphomonas neptunium ATCC 15444 Bcr/CflA subfamily drug resistance transporter YP_761789.1 3293840 D 228405 CDS YP_761790.1 114797472 4288417 complement(3295048..3295962) 1 NC_008358.1 identified by match to protein family HMM TIGR00768; alpha-L-glutamate ligase 3295962 4288417 HNE_3114 Hyphomonas neptunium ATCC 15444 alpha-L-glutamate ligase YP_761790.1 3295048 R 228405 CDS YP_761791.1 114797164 4287623 complement(3296520..3298514) 1 NC_008358.1 identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641; putative methylmalonyl-CoA mutase 3298514 4287623 HNE_3115 Hyphomonas neptunium ATCC 15444 putative methylmalonyl-CoA mutase YP_761791.1 3296520 R 228405 CDS YP_761792.1 114797670 4288148 3298548..3299201 1 NC_008358.1 hypothetical protein 3299201 4288148 HNE_3116 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761792.1 3298548 D 228405 CDS YP_761793.1 114799694 4289112 complement(3299198..3300088) 1 NC_008358.1 identified by match to protein family HMM PF01063; putative D-alanine aminotransferase 3300088 4289112 HNE_3117 Hyphomonas neptunium ATCC 15444 putative D-alanine aminotransferase YP_761793.1 3299198 R 228405 CDS YP_761794.1 114798785 4287767 3300244..3301515 1 NC_008358.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751; crotonyl-CoA reductase 3301515 ccrA 4287767 ccrA Hyphomonas neptunium ATCC 15444 crotonyl-CoA reductase YP_761794.1 3300244 D 228405 CDS YP_761795.1 114798260 4287240 3301512..3301877 1 NC_008358.1 identified by similarity to GB:CAH37602.1; hypothetical protein 3301877 4287240 HNE_3119 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761795.1 3301512 D 228405 CDS YP_761796.1 114797315 4287520 3301889..3302413 1 NC_008358.1 identified by similarity to GB:AAP09809.1; hypothetical protein 3302413 4287520 HNE_3120 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761796.1 3301889 D 228405 CDS YP_761797.1 114797453 4288573 3302571..3303032 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3303032 4288573 HNE_3121 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_761797.1 3302571 D 228405 CDS YP_761798.1 114799699 4289117 complement(3303048..3303506) 1 NC_008358.1 hypothetical protein 3303506 4289117 HNE_3123 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761798.1 3303048 R 228405 CDS YP_761799.1 114799406 4289543 3303072..3303473 1 NC_008358.1 hypothetical protein 3303473 4289543 HNE_3122 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761799.1 3303072 D 228405 CDS YP_761800.1 114798213 4287837 complement(3303596..3304888) 1 NC_008358.1 identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase 3304888 purA 4287837 purA Hyphomonas neptunium ATCC 15444 adenylosuccinate synthetase YP_761800.1 3303596 R 228405 CDS YP_761801.1 114800229 4289003 complement(3304973..3305554) 1 NC_008358.1 identified by similarity to GB:AAK25066.1; hypothetical protein 3305554 4289003 HNE_3125 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761801.1 3304973 R 228405 CDS YP_761802.1 114800302 4287947 complement(3305657..3307252) 1 NC_008358.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 3307252 serA 4287947 serA Hyphomonas neptunium ATCC 15444 D-3-phosphoglycerate dehydrogenase YP_761802.1 3305657 R 228405 CDS YP_761803.1 114798225 4288606 complement(3307245..3307766) 1 NC_008358.1 identified by similarity to SP:P19650; match to protein family HMM PF00583; putative aminoglycoside N6'-acetyltransferase 3307766 4288606 HNE_3127 Hyphomonas neptunium ATCC 15444 putative aminoglycoside N6'-acetyltransferase YP_761803.1 3307245 R 228405 CDS YP_761804.1 114797454 4288574 complement(3308179..3309345) 1 NC_008358.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 3309345 4288574 HNE_3128 Hyphomonas neptunium ATCC 15444 phosphoserine aminotransferase YP_761804.1 3308179 R 228405 CDS YP_761805.1 114799789 4289806 complement(3309453..3310091) 1 NC_008358.1 identified by similarity to GB:BAB50416.1; match to protein family HMM PF07947; hypothetical protein 3310091 4289806 HNE_3129 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761805.1 3309453 R 228405 CDS YP_761806.1 114797407 4287673 complement(3310088..3310489) 1 NC_008358.1 identified by match to protein family HMM PF06803; hypothetical protein 3310489 4287673 HNE_3130 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761806.1 3310088 R 228405 CDS YP_761807.1 114799743 4288027 3310556..3311338 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein 3311338 4288027 HNE_3131 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family protein YP_761807.1 3310556 D 228405 CDS YP_761808.1 114798977 4288253 3311506..3312183 1 NC_008358.1 identified by match to protein family HMM PF00881; nitroreductase family protein 3312183 4288253 HNE_3132 Hyphomonas neptunium ATCC 15444 nitroreductase family protein YP_761808.1 3311506 D 228405 CDS YP_761809.1 114798652 4290398 3312282..3313457 1 NC_008358.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acyltransferase/thiolase family protein 3313457 4290398 HNE_3133 Hyphomonas neptunium ATCC 15444 acetyl-CoA acyltransferase/thiolase family protein YP_761809.1 3312282 D 228405 CDS YP_761810.1 114797878 4288668 complement(3313519..3313986) 1 NC_008358.1 identified by match to protein family HMM PF01575; MaoC domain-containing protein 3313986 4288668 HNE_3134 Hyphomonas neptunium ATCC 15444 MaoC domain-containing protein YP_761810.1 3313519 R 228405 CDS YP_761811.1 114800198 4288972 complement(3314133..3314894) 1 NC_008358.1 identified by similarity to GB:AAL94753.1; hypothetical protein 3314894 4288972 HNE_3135 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761811.1 3314133 R 228405 CDS YP_761812.1 114798691 4289761 complement(3315057..3315947) 1 NC_008358.1 identified by match to protein family HMM PF00487; fatty acid desaturase 3315947 4289761 HNE_3136 Hyphomonas neptunium ATCC 15444 fatty acid desaturase YP_761812.1 3315057 R 228405 CDS YP_761813.1 114797663 4288141 3316180..3317397 1 NC_008358.1 hypothetical protein 3317397 4288141 HNE_3137 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761813.1 3316180 D 228405 CDS YP_761814.1 114797088 4287369 complement(3317406..3318455) 1 NC_008358.1 identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238; putative L-lysine 2,3-aminomutase 3318455 4287369 HNE_3138 Hyphomonas neptunium ATCC 15444 putative L-lysine 2,3-aminomutase YP_761814.1 3317406 R 228405 CDS YP_761815.1 114799660 4288682 complement(3318452..3319495) 1 NC_008358.1 identified by match to protein family HMM PF00152; tRNA synthetase, class II 3319495 4288682 HNE_3139 Hyphomonas neptunium ATCC 15444 tRNA synthetase, class II YP_761815.1 3318452 R 228405 CDS YP_761816.1 114797547 4287382 3319629..3320201 1 NC_008358.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3320201 efp 4287382 efp Hyphomonas neptunium ATCC 15444 elongation factor P YP_761816.1 3319629 D 228405 CDS YP_761817.1 114800165 4290009 3320760..3321134 1 NC_008358.1 identified by similarity to GB:BAC45363.1; hypothetical protein 3321134 4290009 HNE_3141 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761817.1 3320760 D 228405 CDS YP_761818.1 114799615 4290255 3321307..3322008 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3322008 4290255 HNE_3142 Hyphomonas neptunium ATCC 15444 DNA-binding response regulator YP_761818.1 3321307 D 228405 CDS YP_761819.1 114798578 4289508 complement(3322005..3324686) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase/response regulator 3324686 4289508 HNE_3143 Hyphomonas neptunium ATCC 15444 sensory box sensor histidine kinase/response regulator YP_761819.1 3322005 R 228405 CDS YP_761820.1 114798084 4288232 complement(3324716..3325267) 1 NC_008358.1 hypothetical protein 3325267 4288232 HNE_3144 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761820.1 3324716 R 228405 CDS YP_761821.1 114797132 4288349 complement(3325621..3326712) 1 NC_008358.1 identified by match to protein family HMM PF00089; trypsin domain-containing lipoprotein 3326712 4288349 HNE_3146 Hyphomonas neptunium ATCC 15444 trypsin domain-containing lipoprotein YP_761821.1 3325621 R 228405 CDS YP_761822.1 114798274 4287254 complement(3326709..3327707) 1 NC_008358.1 T4 family peptidase 3327707 4287254 HNE_3147 Hyphomonas neptunium ATCC 15444 T4 family peptidase YP_761822.1 3326709 R 228405 CDS YP_761823.1 114799053 4288952 3327785..3329566 1 NC_008358.1 identified by match to protein family HMM PF01019; gamma-glutamyltransferase 3329566 ggt2 4288952 ggt2 Hyphomonas neptunium ATCC 15444 gamma-glutamyltransferase YP_761823.1 3327785 D 228405 CDS YP_761824.1 114800430 4288172 3329589..3330176 1 NC_008358.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3330176 tdk 4288172 tdk Hyphomonas neptunium ATCC 15444 thymidine kinase YP_761824.1 3329589 D 228405 CDS YP_761825.1 114797681 4287887 3330212..3330868 1 NC_008358.1 identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 3330868 4287887 HNE_3150 Hyphomonas neptunium ATCC 15444 rhodanese-like domain-containing protein YP_761825.1 3330212 D 228405 CDS YP_761826.1 114797718 4289233 3330995..3331780 1 NC_008358.1 identified by similarity to SP:Q44532; match to protein family HMM PF00970; match to protein family HMM PF08021; ferredoxin-NADP reductase family protein 3331780 4289233 HNE_3151 Hyphomonas neptunium ATCC 15444 ferredoxin-NADP reductase family protein YP_761826.1 3330995 D 228405 CDS YP_761827.1 114798695 4289765 complement(3331781..3332644) 1 NC_008358.1 identified by match to protein family HMM PF00520; cation channel family protein 3332644 4289765 HNE_3152 Hyphomonas neptunium ATCC 15444 cation channel family protein YP_761827.1 3331781 R 228405 CDS YP_761828.1 114799753 4288037 complement(3332734..3333732) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3333732 4288037 HNE_3153 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_761828.1 3332734 R 228405 CDS YP_761829.1 114797215 4289932 complement(3333874..3334521) 1 NC_008358.1 hypothetical protein 3334521 4289932 HNE_3154 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761829.1 3333874 R 228405 CDS YP_761830.1 114799507 4288900 complement(3334570..3336636) 1 NC_008358.1 identified by similarity to SP:P36655; DsbD family thioredoxin 3336636 4288900 HNE_3155 Hyphomonas neptunium ATCC 15444 DsbD family thioredoxin YP_761830.1 3334570 R 228405 CDS YP_761831.1 114800476 4289429 complement(3336875..3337669) 1 NC_008358.1 identified by match to protein family HMM PF07277; SapC family protein 3337669 4289429 HNE_3156 Hyphomonas neptunium ATCC 15444 SapC family protein YP_761831.1 3336875 R 228405 CDS YP_761832.1 114798309 4289473 3337776..3339659 1 NC_008358.1 identified by similarity to GB:AAK23989.1; match to protein family HMM PF05960; hypothetical protein 3339659 4289473 HNE_3157 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761832.1 3337776 D 228405 CDS YP_761833.1 114799776 4289793 3339687..3339998 1 NC_008358.1 hypothetical protein 3339998 4289793 HNE_3158 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761833.1 3339687 D 228405 CDS YP_761834.1 114797239 4287345 complement(3339690..3340028) 1 NC_008358.1 hypothetical protein 3340028 4287345 HNE_3159 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761834.1 3339690 R 228405 CDS YP_761835.1 114798848 4287812 complement(3340207..3340542) 1 NC_008358.1 identified by similarity to GB:AAK25626.1; hypothetical protein 3340542 4287812 HNE_3160 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761835.1 3340207 R 228405 CDS YP_761836.1 114798756 4287991 complement(3340811..3341428) 1 NC_008358.1 identified by match to protein family HMM TIGR02396; rpsU-divergently transcribed protein 3341428 4287991 HNE_3161 Hyphomonas neptunium ATCC 15444 rpsU-divergently transcribed protein YP_761836.1 3340811 R 228405 CDS YP_761837.1 114799687 4288709 3341564..3341773 1 NC_008358.1 identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 3341773 rpsU 4288709 rpsU Hyphomonas neptunium ATCC 15444 30S ribosomal protein S21 YP_761837.1 3341564 D 228405 CDS YP_761838.1 114800275 4287920 3341939..3342643 1 NC_008358.1 hypothetical protein 3342643 4287920 HNE_3163 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761838.1 3341939 D 228405 CDS YP_761839.1 114799293 4289018 complement(3342654..3344045) 1 NC_008358.1 identified by similarity to GB:AAK25260.1; hypothetical protein 3344045 4289018 HNE_3164 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761839.1 3342654 R 228405 CDS YP_761840.1 114798859 4289715 complement(3344045..3345016) 1 NC_008358.1 identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 3345016 4289715 HNE_3165 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_761840.1 3344045 R 228405 CDS YP_761841.1 114798064 4287844 complement(3345051..3345143) 1 NC_008358.1 hypothetical protein 3345143 4287844 HNE_3166 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761841.1 3345051 R 228405 CDS YP_761842.1 114798717 4290445 complement(3345156..3345458) 1 NC_008358.1 identified by similarity to GB:AAK25268.1; hypothetical protein 3345458 4290445 HNE_3167 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761842.1 3345156 R 228405 CDS YP_761843.1 114798809 4289159 complement(3345569..3346021) 1 NC_008358.1 identified by match to protein family HMM PF06676; hypothetical protein 3346021 4289159 HNE_3168 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761843.1 3345569 R 228405 CDS YP_761844.1 114800009 4288801 complement(3346034..3346294) 1 NC_008358.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 3346294 grxC 4288801 grxC Hyphomonas neptunium ATCC 15444 glutaredoxin 3 YP_761844.1 3346034 R 228405 CDS YP_761845.1 114797458 4288578 complement(3346363..3347121) 1 NC_008358.1 identified by match to protein family HMM PF00156; ComF family protein 3347121 4288578 HNE_3170 Hyphomonas neptunium ATCC 15444 ComF family protein YP_761845.1 3346363 R 228405 CDS YP_761846.1 114800231 4289005 3347132..3348043 1 NC_008358.1 identified by similarity to GB:AAK22816.1; match to protein family HMM PF05401; hypothetical protein 3348043 4289005 HNE_3171 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761846.1 3347132 D 228405 CDS YP_761847.1 114797894 4288082 complement(3348051..3348230) 1 NC_008358.1 identified by match to protein family HMM PF04964; flp/Fap pilus protein 3348230 4288082 HNE_3172 Hyphomonas neptunium ATCC 15444 flp/Fap pilus protein YP_761847.1 3348051 R 228405 CDS YP_761848.1 114797108 4287975 complement(3348230..3348646) 1 NC_008358.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; putative mutator mutT protein 3348646 4287975 HNE_3173 Hyphomonas neptunium ATCC 15444 putative mutator mutT protein YP_761848.1 3348230 R 228405 CDS YP_761849.1 114798075 4287855 complement(3348643..3349893) 1 NC_008358.1 identified by similarity to SP:P38434; match to protein family HMM PF01960; match to protein family HMM TIGR00120; arginine biosynthesis bifunctional protein ArgJ 3349893 argJ 4287855 argJ Hyphomonas neptunium ATCC 15444 arginine biosynthesis bifunctional protein ArgJ YP_761849.1 3348643 R 228405 CDS YP_761850.1 114799826 4290134 complement(3349890..3350801) 1 NC_008358.1 identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 3350801 4290134 HNE_3175 Hyphomonas neptunium ATCC 15444 peptidyl-prolyl cis-trans isomerase domain-containing protein YP_761850.1 3349890 R 228405 CDS YP_761851.1 114797726 4289241 3350983..3353748 1 NC_008358.1 identified by similarity to SP:P10408; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; Preprotein translocase subunit SecA 3353748 secA 4289241 secA Hyphomonas neptunium ATCC 15444 Preprotein translocase subunit SecA YP_761851.1 3350983 D 228405 CDS YP_761852.1 114799915 4290245 3353715..3354266 1 NC_008358.1 hypothetical protein 3354266 4290245 HNE_3177 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761852.1 3353715 D 228405 CDS YP_761853.1 114797168 4287627 complement(3354429..3355367) 1 NC_008358.1 identified by similarity to GB:BAC50594.1; match to protein family HMM PF00892; hypothetical protein 3355367 4287627 HNE_3178 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761853.1 3354429 R 228405 CDS YP_761854.1 114798520 4290325 3355564..3356574 1 NC_008358.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 3356574 gap 4290325 gap Hyphomonas neptunium ATCC 15444 glyceraldehyde-3-phosphate dehydrogenase, type I YP_761854.1 3355564 D 228405 CDS YP_761855.1 114799328 4290162 3356687..3357883 1 NC_008358.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3357883 pgk 4290162 pgk Hyphomonas neptunium ATCC 15444 phosphoglycerate kinase YP_761855.1 3356687 D 228405 CDS YP_761856.1 114797979 4288342 3357986..3358879 1 NC_008358.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 3358879 fda 4288342 fda Hyphomonas neptunium ATCC 15444 fructose-1,6-bisphosphate aldolase YP_761856.1 3357986 D 228405 CDS YP_761857.1 114798750 4287985 3358987..3359283 1 NC_008358.1 identified by similarity to GB:BAB53320.1; hypothetical protein 3359283 4287985 HNE_3182 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761857.1 3358987 D 228405 CDS YP_761858.1 114799812 4290120 3359295..3359525 1 NC_008358.1 identified by similarity to SP:P42878; match to protein family HMM PF06906; hypothetical protein 3359525 4290120 HNE_3183 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761858.1 3359295 D 228405 CDS YP_761859.1 114797287 4289211 complement(3359559..3359831) 1 NC_008358.1 identified by similarity to GB:AAQ58256.1; hypothetical protein 3359831 4289211 HNE_3184 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761859.1 3359559 R 228405 CDS YP_761860.1 114797291 4289215 3359940..3360605 1 NC_008358.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 3360605 thiE 4289215 thiE Hyphomonas neptunium ATCC 15444 thiamine-phosphate pyrophosphorylase YP_761860.1 3359940 D 228405 CDS YP_761861.1 114798326 4287109 complement(3360625..3360921) 1 NC_008358.1 identified by similarity to GB:CAE29794.1; hypothetical protein 3360921 4287109 HNE_3186 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761861.1 3360625 R 228405 CDS YP_761862.1 114797941 4287915 3361091..3361912 1 NC_008358.1 identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol-1-monophosphatase 3361912 suhB 4287915 suhB Hyphomonas neptunium ATCC 15444 inositol-1-monophosphatase YP_761862.1 3361091 D 228405 CDS YP_761863.1 114800504 4289457 3362042..3363541 1 NC_008358.1 identified by similarity to GB:BAC51207.1; match to protein family HMM PF00743; hypothetical protein 3363541 4289457 HNE_3188 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761863.1 3362042 D 228405 CDS YP_761864.1 114799920 4290250 3363833..3364417 1 NC_008358.1 hypothetical protein 3364417 4290250 HNE_3189 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761864.1 3363833 D 228405 CDS YP_761865.1 114798588 4290491 3364547..3365722 1 NC_008358.1 identified by match to protein family HMM PF00665; ISHne2, transposase 3365722 4290491 HNE_3190 Hyphomonas neptunium ATCC 15444 ISHne2, transposase YP_761865.1 3364547 D 228405 CDS YP_761866.1 114797847 4288791 3365876..3366064 1 NC_008358.1 hypothetical protein 3366064 4288791 HNE_3191 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761866.1 3365876 D 228405 CDS YP_761867.1 114798592 4290495 complement(3366046..3367878) 1 NC_008358.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; efflux ABC transporter permease/ATP-binding protein 3367878 4290495 HNE_3192 Hyphomonas neptunium ATCC 15444 efflux ABC transporter permease/ATP-binding protein YP_761867.1 3366046 R 228405 CDS YP_761868.1 114800232 4289006 3368052..3368270 1 NC_008358.1 identified by match to protein family HMM TIGR00105; 50S ribosomal protein L31 3368270 rpmE 4289006 rpmE Hyphomonas neptunium ATCC 15444 50S ribosomal protein L31 YP_761868.1 3368052 D 228405 CDS YP_761869.1 114799372 4288843 complement(3368344..3369150) 1 NC_008358.1 identified by similarity to GB:AAF04376.1; match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3369150 4288843 HNE_3194 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_761869.1 3368344 R 228405 CDS YP_761870.1 114797140 4288357 complement(3369147..3370430) 1 NC_008358.1 identified by match to protein family HMM PF04932; putative O-antigen polymerase 3370430 4288357 HNE_3195 Hyphomonas neptunium ATCC 15444 putative O-antigen polymerase YP_761870.1 3369147 R 228405 CDS YP_761871.1 114799933 4290087 complement(3370437..3372410) 1 NC_008358.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3372410 thrS 4290087 thrS Hyphomonas neptunium ATCC 15444 threonyl-tRNA synthetase YP_761871.1 3370437 R 228405 CDS YP_761872.1 114798636 4289895 complement(3372681..3373001) 1 NC_008358.1 identified by similarity to SP:Q89IV9; match to protein family HMM PF01809; hypothetical protein 3373001 4289895 HNE_3197 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761872.1 3372681 R 228405 CDS YP_761873.1 114799469 4290050 complement(3373001..3373444) 1 NC_008358.1 identified by similarity to GB:BAC50788.1; hypothetical protein 3373444 4290050 HNE_3198 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761873.1 3373001 R 228405 CDS YP_761874.1 114800206 4288980 complement(3373637..3374257) 1 NC_008358.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein 3374257 4288980 HNE_3199 Hyphomonas neptunium ATCC 15444 ExoD family protein YP_761874.1 3373637 R 228405 CDS YP_761875.1 114797483 4289698 complement(3374254..3374811) 1 NC_008358.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 3374811 4289698 HNE_3200 Hyphomonas neptunium ATCC 15444 phosphoglycerate mutase family protein YP_761875.1 3374254 R 228405 CDS YP_761876.1 114797963 4289575 complement(3374796..3376181) 1 NC_008358.1 identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase 3376181 cysS 4289575 cysS Hyphomonas neptunium ATCC 15444 cysteinyl-tRNA synthetase YP_761876.1 3374796 R 228405 CDS YP_761877.1 114799006 4288438 3376206..3376436 1 NC_008358.1 hypothetical protein 3376436 4288438 HNE_3202 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761877.1 3376206 D 228405 CDS YP_761878.1 114797723 4289238 3376545..3377165 1 NC_008358.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 3377165 folE 4289238 folE Hyphomonas neptunium ATCC 15444 GTP cyclohydrolase I YP_761878.1 3376545 D 228405 CDS YP_761879.1 114798758 4287993 complement(3377229..3377948) 1 NC_008358.1 identified by similarity to SP:Q9ASR4; hypothetical protein 3377948 4287993 HNE_3204 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761879.1 3377229 R 228405 CDS YP_761880.1 114797757 4288215 complement(3377959..3378864) 1 NC_008358.1 identified by match to protein family HMM PF01063; putative branched-chain amino acid aminotransferase 3378864 4288215 HNE_3205 Hyphomonas neptunium ATCC 15444 putative branched-chain amino acid aminotransferase YP_761880.1 3377959 R 228405 CDS YP_761881.1 114798796 4287779 complement(3378888..3379649) 1 NC_008358.1 identified by similarity to GB:BAB48463.1; hypothetical protein 3379649 4287779 HNE_3206 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761881.1 3378888 R 228405 CDS YP_761882.1 114800548 4289050 complement(3379671..3380186) 1 NC_008358.1 identified by similarity to GB:AAF79926.1; match to protein family HMM PF00293; NUDIX family hydrolase 3380186 4289050 HNE_3207 Hyphomonas neptunium ATCC 15444 NUDIX family hydrolase YP_761882.1 3379671 R 228405 CDS YP_761883.1 114799786 4289803 complement(3380183..3381472) 1 NC_008358.1 identified by similarity to GB:BAC45700.1; match to protein family HMM PF04748; hypothetical protein 3381472 4289803 HNE_3208 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761883.1 3380183 R 228405 CDS YP_761884.1 114798612 4289871 complement(3381599..3382948) 1 NC_008358.1 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 3382948 4289871 HNE_3209 Hyphomonas neptunium ATCC 15444 carboxyl-terminal protease YP_761884.1 3381599 R 228405 CDS YP_761885.1 114797629 4288651 complement(3382981..3384216) 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 3384216 4288651 HNE_3210 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_761885.1 3382981 R 228405 CDS YP_761886.1 114799936 4290091 complement(3384234..3384848) 1 NC_008358.1 hypothetical protein 3384848 4290091 HNE_3211 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761886.1 3384234 R 228405 CDS YP_761887.1 114799190 4289945 3384975..3385286 1 NC_008358.1 hypothetical protein 3385286 4289945 HNE_3212 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761887.1 3384975 D 228405 CDS YP_761888.1 114797972 4288335 3385406..3385702 1 NC_008358.1 identified by similarity to GB:AAK24731.1; hypothetical protein 3385702 4288335 HNE_3213 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761888.1 3385406 D 228405 CDS YP_761889.1 114797231 4287337 complement(3385812..3386441) 1 NC_008358.1 hypothetical protein 3386441 4287337 HNE_3214 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761889.1 3385812 R 228405 CDS YP_761890.1 114799548 4288533 complement(3386512..3387051) 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 3387051 4288533 HNE_3215 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761890.1 3386512 R 228405 CDS YP_761891.1 114798394 4289735 complement(3387065..3387520) 1 NC_008358.1 putative lipoprotein 3387520 4289735 HNE_3216 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761891.1 3387065 R 228405 CDS YP_761892.1 114798959 4287416 complement(3387610..3387912) 1 NC_008358.1 identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 3387912 4287416 HNE_3217 Hyphomonas neptunium ATCC 15444 antibiotic biosynthesis monooxygenase domain-containing protein YP_761892.1 3387610 R 228405 CDS YP_761893.1 114799989 4290204 complement(3387921..3388883) 1 NC_008358.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 3388883 mdh 4290204 mdh Hyphomonas neptunium ATCC 15444 malate dehydrogenase YP_761893.1 3387921 R 228405 CDS YP_761894.1 114797078 4287359 complement(3389030..3389803) 1 NC_008358.1 identified by similarity to SP:Q9A2A3; hypothetical protein 3389803 4287359 HNE_3219 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761894.1 3389030 R 228405 CDS YP_761895.1 114798253 4288946 3390182..3390514 1 NC_008358.1 identified by similarity to GB:BAB48836.1; hypothetical protein 3390514 4288946 HNE_3220 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761895.1 3390182 D 228405 CDS YP_761896.1 114799686 4288708 3390587..3391147 1 NC_008358.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 3391147 4288708 HNE_3221 Hyphomonas neptunium ATCC 15444 2'-5' RNA ligase YP_761896.1 3390587 D 228405 CDS YP_761897.1 114800438 4288180 3391323..3391955 1 NC_008358.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein 3391955 4288180 HNE_3223 Hyphomonas neptunium ATCC 15444 ExoD family protein YP_761897.1 3391323 D 228405 CDS YP_761898.1 114797603 4288315 3392005..3392523 1 NC_008358.1 identified by similarity to GB:AAK24167.1; hypothetical protein 3392523 4288315 HNE_3224 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761898.1 3392005 D 228405 CDS YP_761899.1 114798370 4290427 complement(3392543..3393706) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 3393706 4290427 HNE_3225 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase family protein YP_761899.1 3392543 R 228405 CDS YP_761900.1 114800038 4288830 complement(3393819..3395690) 1 NC_008358.1 identified by match to protein family HMM PF05960; putative lipoprotein 3395690 4288830 HNE_3226 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761900.1 3393819 R 228405 CDS YP_761901.1 114797250 4288448 3395793..3396758 1 NC_008358.1 identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; porphobilinogen deaminase 3396758 hemC 4288448 hemC Hyphomonas neptunium ATCC 15444 porphobilinogen deaminase YP_761901.1 3395793 D 228405 CDS YP_761902.1 114800364 4288727 3396755..3397468 1 NC_008358.1 identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase 3397468 hemD 4288727 hemD Hyphomonas neptunium ATCC 15444 uroporphyrinogen-III synthase YP_761902.1 3396755 D 228405 CDS YP_761903.1 114799645 4290285 3397538..3398611 1 NC_008358.1 hypothetical protein 3398611 4290285 HNE_3229 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761903.1 3397538 D 228405 CDS YP_761904.1 114798425 4288164 3398617..3400053 1 NC_008358.1 identified by match to protein family HMM PF07219; HemY domain-containing protein 3400053 4288164 HNE_3230 Hyphomonas neptunium ATCC 15444 HemY domain-containing protein YP_761904.1 3398617 D 228405 CDS YP_761905.1 114797653 4289047 3400244..3400954 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 3400954 4289047 HNE_3232 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_761905.1 3400244 D 228405 CDS YP_761906.1 114797308 4287513 complement(3400965..3401783) 1 NC_008358.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 3401783 4287513 HNE_3233 Hyphomonas neptunium ATCC 15444 PhzF family phenazine biosynthesis protein YP_761906.1 3400965 R 228405 CDS YP_761907.1 114799777 4289794 complement(3401871..3402689) 1 NC_008358.1 identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 3402689 thiD 4289794 thiD Hyphomonas neptunium ATCC 15444 phosphomethylpyrimidine kinase YP_761907.1 3401871 R 228405 CDS YP_761908.1 114799016 4287533 complement(3402695..3403345) 1 NC_008358.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase 3403345 4287533 HNE_3235 Hyphomonas neptunium ATCC 15444 putative transaldolase YP_761908.1 3402695 R 228405 CDS YP_761909.1 114798680 4289861 complement(3403379..3404689) 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02737; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose dehydrogenase 3404689 4289861 HNE_3236 Hyphomonas neptunium ATCC 15444 UDP-glucose dehydrogenase YP_761909.1 3403379 R 228405 CDS YP_761910.1 114799400 4289537 3404841..3405467 1 NC_008358.1 identified by match to protein family HMM PF02798; glutathione S-transferase 3405467 4289537 HNE_3237 Hyphomonas neptunium ATCC 15444 glutathione S-transferase YP_761910.1 3404841 D 228405 CDS YP_761911.1 114798536 4288101 complement(3405496..3407013) 1 NC_008358.1 identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; putative phosphoglucomutase/phosphomannomutase 3407013 4288101 HNE_3238 Hyphomonas neptunium ATCC 15444 putative phosphoglucomutase/phosphomannomutase YP_761911.1 3405496 R 228405 CDS YP_761912.1 114798145 4290378 3407233..3408018 1 NC_008358.1 identified by match to protein family HMM PF01617; surface antigen family protein 3408018 4290378 HNE_3239 Hyphomonas neptunium ATCC 15444 surface antigen family protein YP_761912.1 3407233 D 228405 CDS YP_761913.1 114799238 4288301 complement(3408015..3408746) 1 NC_008358.1 identified by match to protein family HMM PF00117; class I glutamine amidotransferase domain-containing protein 3408746 4288301 HNE_3240 Hyphomonas neptunium ATCC 15444 class I glutamine amidotransferase domain-containing protein YP_761913.1 3408015 R 228405 CDS YP_761914.1 114799785 4289802 complement(3408743..3410611) 1 NC_008358.1 identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; putative multidrug ABC transporter permease/ATP-binding protein 3410611 4289802 HNE_3241 Hyphomonas neptunium ATCC 15444 putative multidrug ABC transporter permease/ATP-binding protein YP_761914.1 3408743 R 228405 CDS YP_761915.1 114797251 4288449 complement(3410675..3412318) 1 NC_008358.1 identified by similarity to GB:AAK23040.1; match to protein family HMM PF05960; hypothetical protein 3412318 4288449 HNE_3242 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761915.1 3410675 R 228405 CDS YP_761916.1 114798487 4288770 3412514..3412912 1 NC_008358.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit 3412912 sdhC 4288770 sdhC Hyphomonas neptunium ATCC 15444 succinate dehydrogenase, cytochrome b556 subunit YP_761916.1 3412514 D 228405 CDS YP_761917.1 114799518 4288911 3412923..3413312 1 NC_008358.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968; succinate dehydrogenase, hydrophobic membrane anchor protein 3413312 sdhD 4288911 sdhD Hyphomonas neptunium ATCC 15444 succinate dehydrogenase, hydrophobic membrane anchor protein YP_761917.1 3412923 D 228405 CDS YP_761918.1 114798098 4288246 3413339..3415126 1 NC_008358.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3415126 sdhA 4288246 sdhA Hyphomonas neptunium ATCC 15444 succinate dehydrogenase flavoprotein subunit YP_761918.1 3413339 D 228405 CDS YP_761919.1 114799101 4289200 3415160..3415459 1 NC_008358.1 identified by similarity to GB:AAR02143.1; hypothetical protein 3415459 4289200 HNE_3246 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761919.1 3415160 D 228405 CDS YP_761920.1 114799946 4290101 3415494..3416276 1 NC_008358.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 3416276 sdhB 4290101 sdhB Hyphomonas neptunium ATCC 15444 succinate dehydrogenase iron-sulfur subunit YP_761920.1 3415494 D 228405 CDS YP_761921.1 114797183 4287053 3416546..3417484 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 3417484 4287053 HNE_3248 Hyphomonas neptunium ATCC 15444 ISHne3, transposase YP_761921.1 3416546 D 228405 CDS YP_761922.1 114799532 4288925 3417711..3418109 1 NC_008358.1 hypothetical protein 3418109 4288925 HNE_3249 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761922.1 3417711 D 228405 CDS YP_761923.1 114800529 4288874 3418314..3418613 1 NC_008358.1 hypothetical protein 3418613 4288874 HNE_3250 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761923.1 3418314 D 228405 CDS YP_761924.1 114797497 4289712 3418733..3419026 1 NC_008358.1 identified by similarity to GB:BAC47510.1; hypothetical protein 3419026 4289712 HNE_3251 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761924.1 3418733 D 228405 CDS YP_761925.1 114798634 4289893 complement(3419055..3419303) 1 NC_008358.1 hypothetical protein 3419303 4289893 HNE_3252 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761925.1 3419055 R 228405 CDS YP_761926.1 114799083 4287737 complement(3419300..3420187) 1 NC_008358.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882; putative FolD bifunctional protein 3420187 4287737 HNE_3253 Hyphomonas neptunium ATCC 15444 putative FolD bifunctional protein YP_761926.1 3419300 R 228405 CDS YP_761927.1 114798070 4287850 complement(3420168..3420467) 1 NC_008358.1 identified by similarity to SP:Q98EP2; match to protein family HMM PF02594; hypothetical protein 3420467 4287850 HNE_3254 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761927.1 3420168 R 228405 CDS YP_761928.1 114797565 4287283 complement(3420489..3420797) 1 NC_008358.1 identified by similarity to GB:CAE25859.1; match to protein family HMM PF02325; hypothetical protein 3420797 4287283 HNE_3255 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761928.1 3420489 R 228405 CDS YP_761929.1 114800188 4290032 3420990..3422183 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 3422183 4290032 HNE_3256 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_761929.1 3420990 D 228405 CDS YP_761930.1 114800147 4290480 3422336..3423523 1 NC_008358.1 identified by match to protein family HMM PF07690; major facilitator family transporter 3423523 4290480 HNE_3257 Hyphomonas neptunium ATCC 15444 major facilitator family transporter YP_761930.1 3422336 D 228405 CDS YP_761931.1 114799477 4290058 complement(3423520..3424251) 1 NC_008358.1 putative lipoprotein 3424251 4290058 HNE_3258 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_761931.1 3423520 R 228405 CDS YP_761932.1 114798449 4290311 complement(3424306..3425079) 1 NC_008358.1 identified by similarity to SP:P50198; match to protein family HMM PF00106; short chain dehydrogenase 3425079 4290311 HNE_3259 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase YP_761932.1 3424306 R 228405 CDS YP_761933.1 114797701 4289351 3425220..3425870 1 NC_008358.1 hypothetical protein 3425870 4289351 HNE_3260 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761933.1 3425220 D 228405 CDS YP_761934.1 114797190 4287061 3425939..3426301 1 NC_008358.1 hypothetical protein 3426301 4287061 HNE_3261 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761934.1 3425939 D 228405 CDS YP_761935.1 114797713 4289228 3426395..3427798 1 NC_008358.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 3427798 lpdA2 4289228 lpdA2 Hyphomonas neptunium ATCC 15444 dihydrolipoamide dehydrogenase YP_761935.1 3426395 D 228405 CDS YP_761936.1 114798792 4287775 3427821..3428372 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 3428372 4287775 HNE_3263 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_761936.1 3427821 D 228405 CDS YP_761937.1 114799334 4290168 3428377..3429714 1 NC_008358.1 identified by similarity to GB:AAS82622.1; hypothetical protein 3429714 4290168 HNE_3264 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761937.1 3428377 D 228405 CDS YP_761938.1 114800220 4288994 complement(3429721..3429951) 1 NC_008358.1 identified by similarity to GB:AAN56986.1; hypothetical protein 3429951 4288994 HNE_3265 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761938.1 3429721 R 228405 CDS YP_761939.1 114797838 4288782 complement(3430013..3430216) 1 NC_008358.1 hypothetical protein 3430216 4288782 HNE_3266 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761939.1 3430013 R 228405 CDS YP_761940.1 114798633 4289892 complement(3430329..3430784) 1 NC_008358.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'-triphosphate nucleotidohydrolase 3430784 dut 4289892 dut Hyphomonas neptunium ATCC 15444 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_761940.1 3430329 R 228405 CDS YP_761941.1 114799868 4287450 complement(3430830..3432056) 1 NC_008358.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 3432056 coaBC 4287450 coaBC Hyphomonas neptunium ATCC 15444 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_761941.1 3430830 R 228405 CDS YP_761942.1 114800496 4289449 complement(3432173..3432505) 1 NC_008358.1 hypothetical protein 3432505 4289449 HNE_3269 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761942.1 3432173 R 228405 CDS YP_761943.1 114799461 4290042 complement(3432635..3433081) 1 NC_008358.1 identified by similarity to GB:AAM36436.1; match to protein family HMM PF04828; hypothetical protein 3433081 4290042 HNE_3270 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761943.1 3432635 R 228405 CDS YP_761944.1 114798427 4288166 complement(3433142..3434665) 1 NC_008358.1 identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase 3434665 ubiB 4288166 ubiB Hyphomonas neptunium ATCC 15444 2-polyprenylphenol 6-hydroxylase YP_761944.1 3433142 R 228405 CDS YP_761945.1 114800138 4290471 3434685..3434915 1 NC_008358.1 hypothetical protein 3434915 4290471 HNE_3272 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761945.1 3434685 D 228405 CDS YP_761946.1 114800122 4290455 complement(3434927..3435715) 1 NC_008358.1 identified by similarity to SP:P27851; match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase UbiE 3435715 ubiE 4290455 ubiE Hyphomonas neptunium ATCC 15444 ubiquinone/menaquinone biosynthesis methyltransferase UbiE YP_761946.1 3434927 R 228405 CDS YP_761947.1 114799193 4289948 3435714..3436607 1 NC_008358.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3436607 mutM 4289948 mutM Hyphomonas neptunium ATCC 15444 formamidopyrimidine-DNA glycosylase YP_761947.1 3435714 D 228405 CDS YP_761948.1 114798759 4287994 complement(3436604..3437806) 1 NC_008358.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; FAD-dependent oxidoreductase 3437806 4287994 HNE_3275 Hyphomonas neptunium ATCC 15444 FAD-dependent oxidoreductase YP_761948.1 3436604 R 228405 CDS YP_761949.1 114797186 4287057 complement(3437881..3438843) 1 NC_008358.1 hypothetical protein 3438843 4287057 HNE_3276 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761949.1 3437881 R 228405 CDS YP_761950.1 114800111 4289994 complement(3438916..3440067) 1 NC_008358.1 identified by similarity to GB:AAG61032.1; match to protein family HMM PF00441; match to protein family HMM PF08028; putative hydrolase NrgC 3440067 4289994 HNE_3277 Hyphomonas neptunium ATCC 15444 putative hydrolase NrgC YP_761950.1 3438916 R 228405 CDS YP_761951.1 114797081 4287362 complement(3440070..3441809) 1 NC_008358.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 3441809 4287362 HNE_3278 Hyphomonas neptunium ATCC 15444 amidohydrolase family protein YP_761951.1 3440070 R 228405 CDS YP_761952.1 114800031 4288823 complement(3441884..3442234) 1 NC_008358.1 identified by similarity to GB:CAC45584.1; hypothetical protein 3442234 4288823 HNE_3279 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761952.1 3441884 R 228405 CDS YP_761953.1 114799851 4287433 complement(3442231..3443337) 1 NC_008358.1 hypothetical protein 3443337 4287433 HNE_3280 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761953.1 3442231 R 228405 CDS YP_761954.1 114798845 4287809 complement(3443354..3444241) 1 NC_008358.1 identified by match to protein family HMM PF01553; acyltransferase domain-containing protein 3444241 4287809 HNE_3281 Hyphomonas neptunium ATCC 15444 acyltransferase domain-containing protein YP_761954.1 3443354 R 228405 CDS YP_761955.1 114797258 4288456 complement(3444241..3445401) 1 NC_008358.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 3445401 4288456 HNE_3282 Hyphomonas neptunium ATCC 15444 acyl-CoA dehydrogenase YP_761955.1 3444241 R 228405 CDS YP_761956.1 114799570 4288555 complement(3445416..3446333) 1 NC_008358.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3446333 metA 4288555 metA Hyphomonas neptunium ATCC 15444 homoserine O-succinyltransferase YP_761956.1 3445416 R 228405 CDS YP_761957.1 114800473 4289426 complement(3446538..3447350) 1 NC_008358.1 identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase domain-containing protein 3447350 4289426 HNE_3284 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase/isomerase domain-containing protein YP_761957.1 3446538 R 228405 CDS YP_761958.1 114797158 4287617 3447492..3448142 1 NC_008358.1 identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein 3448142 4287617 HNE_3285 Hyphomonas neptunium ATCC 15444 ExoD family protein YP_761958.1 3447492 D 228405 CDS YP_761959.1 114798128 4287596 3448157..3448504 1 NC_008358.1 identified by similarity to GB:BAC46552.1; hypothetical protein 3448504 4287596 HNE_3286 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761959.1 3448157 D 228405 CDS YP_761960.1 114797225 4289942 3448581..3449519 1 NC_008358.1 identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060; trans-2-enoyl-ACP reductase II 3449519 fabK 4289942 fabK Hyphomonas neptunium ATCC 15444 trans-2-enoyl-ACP reductase II YP_761960.1 3448581 D 228405 CDS YP_761961.1 114797980 4288343 3449649..3451829 1 NC_008358.1 identified by similarity to SP:P24171; match to protein family HMM PF01432; peptidyl-dipeptidase 3451829 dcp 4288343 dcp Hyphomonas neptunium ATCC 15444 peptidyl-dipeptidase YP_761961.1 3449649 D 228405 CDS YP_761962.1 114799188 4289943 complement(3451907..3452374) 1 NC_008358.1 identified by match to protein family HMM PF00359; sugar phosphotransferase system (PTS),mannose/fructose family protein 3452374 4289943 HNE_3289 Hyphomonas neptunium ATCC 15444 sugar phosphotransferase system (PTS),mannose/fructose family protein YP_761962.1 3451907 R 228405 CDS YP_761963.1 114800119 4290452 complement(3452401..3452997) 1 NC_008358.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; hypothetical protein 3452997 4290452 HNE_3290 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761963.1 3452401 R 228405 CDS YP_761964.1 114797169 4287039 complement(3453225..3455342) 1 NC_008358.1 hypothetical protein 3455342 4287039 HNE_3291 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761964.1 3453225 R 228405 CDS YP_761965.1 114799167 4287019 complement(3455430..3456536) 1 NC_008358.1 identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; psp operon transcription activator 3456536 pspF 4287019 pspF Hyphomonas neptunium ATCC 15444 psp operon transcription activator YP_761965.1 3455430 R 228405 CDS YP_761966.1 114800010 4288802 3456687..3456878 1 NC_008358.1 hypothetical protein 3456878 4288802 HNE_3293 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761966.1 3456687 D 228405 CDS YP_761967.1 114797618 4288640 3456904..3457584 1 NC_008358.1 identified by similarity to SP:P23853; match to protein family HMM PF04012; match to protein family HMM TIGR02977; phage shock protein A 3457584 pspA 4288640 pspA Hyphomonas neptunium ATCC 15444 phage shock protein A YP_761967.1 3456904 D 228405 CDS YP_761968.1 114798410 4289751 3457698..3457955 1 NC_008358.1 phage shock protein B 3457955 pspB 4289751 pspB Hyphomonas neptunium ATCC 15444 phage shock protein B YP_761968.1 3457698 D 228405 CDS YP_761969.1 114798290 4287231 3457967..3458383 1 NC_008358.1 identified by similarity to SP:P23855; match to protein family HMM PF04024; match to protein family HMM TIGR02978; phage shock protein C 3458383 pspC 4287231 pspC Hyphomonas neptunium ATCC 15444 phage shock protein C YP_761969.1 3457967 D 228405 CDS YP_761970.1 114797327 4289405 3458431..3458616 1 NC_008358.1 hypothetical protein 3458616 4289405 HNE_3297 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761970.1 3458431 D 228405 CDS YP_761971.1 114799736 4288020 complement(3458613..3460433) 1 NC_008358.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05430; FAD dependent oxidoreductase domain-containing protein 3460433 4288020 HNE_3298 Hyphomonas neptunium ATCC 15444 FAD dependent oxidoreductase domain-containing protein YP_761971.1 3458613 R 228405 CDS YP_761972.1 114799528 4288921 3460578..3460865 1 NC_008358.1 identified by similarity to GB:CAC47295.1; hypothetical protein 3460865 4288921 HNE_3299 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761972.1 3460578 D 228405 CDS YP_761973.1 114798729 4289292 3460891..3461139 1 NC_008358.1 identified by similarity to GB:AAT43525.1; hypothetical protein 3461139 4289292 HNE_3300 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761973.1 3460891 D 228405 CDS YP_761974.1 114797501 4287630 3461136..3461414 1 NC_008358.1 identified by similarity to GB:AAM40706.1; hypothetical protein 3461414 4287630 HNE_3301 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761974.1 3461136 D 228405 CDS YP_761975.1 114800294 4287939 3461419..3461868 1 NC_008358.1 identified by similarity to SP:Q88E79; match to protein family HMM PF05779; hypothetical protein 3461868 4287939 HNE_3302 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761975.1 3461419 D 228405 CDS YP_761976.1 114799919 4290249 3461923..3462246 1 NC_008358.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 3462246 4290249 HNE_3303 Hyphomonas neptunium ATCC 15444 ArsR family transcriptional regulator YP_761976.1 3461923 D 228405 CDS YP_761977.1 114799160 4287012 3462243..3462461 1 NC_008358.1 hypothetical protein 3462461 4287012 HNE_3304 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761977.1 3462243 D 228405 CDS YP_761978.1 114798014 4290070 3462468..3462893 1 NC_008358.1 identified by similarity to PIR:C95983; hypothetical protein 3462893 4290070 HNE_3305 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761978.1 3462468 D 228405 CDS YP_761979.1 114797620 4288642 3462890..3463291 1 NC_008358.1 identified by similarity to GB:BAC52018.1; hypothetical protein 3463291 4288642 HNE_3306 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761979.1 3462890 D 228405 CDS YP_761980.1 114798569 4289499 3463288..3463686 1 NC_008358.1 identified by similarity to GB:BAB49428.1; hypothetical protein 3463686 4289499 HNE_3307 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761980.1 3463288 D 228405 CDS YP_761981.1 114798167 4287656 3463731..3464630 1 NC_008358.1 identified by similarity to GB:CAA55226.1; match to protein family HMM PF00589; match to protein family HMM PF02899; putative tyrosine recombinase XerC 3464630 4287656 HNE_3308 Hyphomonas neptunium ATCC 15444 putative tyrosine recombinase XerC YP_761981.1 3463731 D 228405 CDS YP_761982.1 114797411 4287677 complement(3464637..3465809) 1 NC_008358.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; putative oxygen-independent coproporphyrinogen III oxidase 3465809 4287677 HNE_3309 Hyphomonas neptunium ATCC 15444 putative oxygen-independent coproporphyrinogen III oxidase YP_761982.1 3464637 R 228405 CDS YP_761983.1 114800076 4289399 complement(3465806..3466462) 1 NC_008358.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; non-canonical purine NTP pyrophosphatase 3466462 rdgB 4289399 rdgB Hyphomonas neptunium ATCC 15444 non-canonical purine NTP pyrophosphatase YP_761983.1 3465806 R 228405 CDS YP_761984.1 114799603 4289099 3466585..3467079 1 NC_008358.1 hypothetical protein 3467079 4289099 HNE_3311 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761984.1 3466585 D 228405 CDS YP_761985.1 114799014 4287531 3467095..3467334 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 3467334 4287531 HNE_3312 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_761985.1 3467095 D 228405 CDS YP_761986.1 114797623 4288645 3467388..3468068 1 NC_008358.1 identified by similarity to GB:AAG28336.1; putative satD protein 3468068 4288645 HNE_3313 Hyphomonas neptunium ATCC 15444 putative satD protein YP_761986.1 3467388 D 228405 CDS YP_761987.1 114800112 4289995 3468055..3468444 1 NC_008358.1 hypothetical protein 3468444 4289995 HNE_3314 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761987.1 3468055 D 228405 CDS YP_761988.1 114798422 4288161 complement(3468445..3469170) 1 NC_008358.1 identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966; ribonuclease PH 3469170 rph 4288161 rph Hyphomonas neptunium ATCC 15444 ribonuclease PH YP_761988.1 3468445 R 228405 CDS YP_761989.1 114799647 4290287 3469261..3470931 1 NC_008358.1 identified by match to protein family HMM PF01268; formate--tetrahydrofolate ligase 3470931 fhs 4290287 fhs Hyphomonas neptunium ATCC 15444 formate--tetrahydrofolate ligase YP_761989.1 3469261 D 228405 CDS YP_761990.1 114800305 4287950 3470977..3472065 1 NC_008358.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 3472065 hrcA 4287950 hrcA Hyphomonas neptunium ATCC 15444 heat-inducible transcription repressor YP_761990.1 3470977 D 228405 CDS YP_761991.1 114797336 4289414 3472065..3472631 1 NC_008358.1 identified by match to protein family HMM PF01025; co-chaperone GrpE 3472631 grpE 4289414 grpE Hyphomonas neptunium ATCC 15444 co-chaperone GrpE YP_761991.1 3472065 D 228405 CDS YP_761992.1 114797965 4288328 complement(3472650..3473570) 1 NC_008358.1 hypothetical protein 3473570 4288328 HNE_3319 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761992.1 3472650 R 228405 CDS YP_761993.1 114799170 4288387 complement(3473667..3473918) 1 NC_008358.1 identified by similarity to PIR:E83372; hypothetical protein 3473918 4288387 HNE_3320 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761993.1 3473667 R 228405 CDS YP_761994.1 114798319 4287102 3474210..3476105 1 NC_008358.1 identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein DnaK 3476105 dnaK 4287102 dnaK Hyphomonas neptunium ATCC 15444 chaperone protein DnaK YP_761994.1 3474210 D 228405 CDS YP_761995.1 114798065 4287845 3476261..3476878 1 NC_008358.1 hypothetical protein 3476878 4287845 HNE_3322 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761995.1 3476261 D 228405 CDS YP_761996.1 114798574 4289504 complement(3476925..3477914) 1 NC_008358.1 identified by similarity to SP:Q08257; match to protein family HMM PF00107; putative quinone oxidoreductase 3477914 4289504 HNE_3323 Hyphomonas neptunium ATCC 15444 putative quinone oxidoreductase YP_761996.1 3476925 R 228405 CDS YP_761997.1 114800051 4289374 3478012..3478884 1 NC_008358.1 identified by match to protein family HMM PF01112; putative asparaginase 3478884 4289374 HNE_3324 Hyphomonas neptunium ATCC 15444 putative asparaginase YP_761997.1 3478012 D 228405 CDS YP_761998.1 114797073 4287354 3478881..3479201 1 NC_008358.1 hypothetical protein 3479201 4287354 HNE_3325 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_761998.1 3478881 D 228405 CDS YP_761999.1 114798567 4287411 3479201..3479734 1 NC_008358.1 identified by match to protein family HMM PF00588; RNA methyltransferase 3479734 4287411 HNE_3326 Hyphomonas neptunium ATCC 15444 RNA methyltransferase YP_761999.1 3479201 D 228405 CDS YP_762000.1 114799135 4287789 complement(3479756..3480430) 1 NC_008358.1 identified by similarity to SP:P40685; match to protein family HMM PF07883; ChR family anti-sigma factor 3480430 4287789 HNE_3327 Hyphomonas neptunium ATCC 15444 ChR family anti-sigma factor YP_762000.1 3479756 R 228405 CDS YP_762001.1 114798215 4287839 complement(3480520..3481065) 1 NC_008358.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 3481065 4287839 HNE_3328 Hyphomonas neptunium ATCC 15444 ECF subfamily RNA polymerase sigma factor YP_762001.1 3480520 R 228405 CDS YP_762002.1 114799447 4289663 3481255..3481788 1 NC_008358.1 identified by similarity to PIR:AD3485; hypothetical protein 3481788 4289663 HNE_3329 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762002.1 3481255 D 228405 CDS YP_762003.1 114800290 4287935 complement(3481862..3482497) 1 NC_008358.1 identified by match to protein family HMM PF00691; OmpA family protein 3482497 4287935 HNE_3330 Hyphomonas neptunium ATCC 15444 OmpA family protein YP_762003.1 3481862 R 228405 CDS YP_762004.1 114797352 4287206 3482686..3483849 1 NC_008358.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein 3483849 4287206 HNE_3331 Hyphomonas neptunium ATCC 15444 radical SAM protein YP_762004.1 3482686 D 228405 CDS YP_762005.1 114800151 4290484 complement(3483860..3486091) 1 NC_008358.1 putative transporter 3486091 4290484 HNE_3332 Hyphomonas neptunium ATCC 15444 putative transporter YP_762005.1 3483860 R 228405 CDS YP_762006.1 114797851 4287120 3486211..3486960 1 NC_008358.1 identified by similarity to GB:CAC46553.1; putative lipoprotein 3486960 4287120 HNE_3333 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762006.1 3486211 D 228405 CDS YP_762007.1 114798596 4290499 3486957..3487193 1 NC_008358.1 identified by similarity to GB:AAO58762.1; hypothetical protein 3487193 4290499 HNE_3334 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762007.1 3486957 D 228405 CDS YP_762008.1 114798929 4287873 3487288..3487629 1 NC_008358.1 identified by match to protein family HMM PF03960; ArsC family protein 3487629 4287873 HNE_3335 Hyphomonas neptunium ATCC 15444 ArsC family protein YP_762008.1 3487288 D 228405 CDS YP_762009.1 114799803 4289820 complement(3487662..3487949) 1 NC_008358.1 hypothetical protein 3487949 4289820 HNE_3336 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762009.1 3487662 R 228405 CDS YP_762010.1 114797390 4287086 3488106..3488537 1 NC_008358.1 identified by similarity to GB:AAS71203.1; hypothetical protein 3488537 4287086 HNE_3337 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762010.1 3488106 D 228405 CDS YP_762011.1 114799796 4289813 3488534..3490426 1 NC_008358.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3490426 thiC 4289813 thiC Hyphomonas neptunium ATCC 15444 thiamine biosynthesis protein ThiC YP_762011.1 3488534 D 228405 CDS YP_762012.1 114797060 4287028 3490490..3491263 1 NC_008358.1 identified by similarity to GB:CAG41809.1; hypothetical protein 3491263 4287028 HNE_3339 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762012.1 3490490 D 228405 CDS YP_762013.1 114799404 4289541 complement(3491365..3491541) 1 NC_008358.1 identified by similarity to GB:CAG20701.1; hypothetical protein 3491541 4289541 HNE_3340 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762013.1 3491365 R 228405 CDS YP_762014.1 114799045 4290523 complement(3491745..3492119) 1 NC_008358.1 hypothetical protein 3492119 4290523 HNE_3341 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762014.1 3491745 R 228405 CDS YP_762015.1 114797325 4289403 3492226..3492348 1 NC_008358.1 hypothetical protein 3492348 4289403 HNE_3342 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762015.1 3492226 D 228405 CDS YP_762016.1 114798061 4289536 complement(3492323..3493147) 1 NC_008358.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 3493147 4289536 HNE_3343 Hyphomonas neptunium ATCC 15444 Ser/Thr protein phosphatase family protein YP_762016.1 3492323 R 228405 CDS YP_762017.1 114800286 4287931 complement(3493248..3494993) 1 NC_008358.1 putative lipoprotein 3494993 4287931 HNE_3344 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762017.1 3493248 R 228405 CDS YP_762018.1 114799264 4289694 3495062..3495781 1 NC_008358.1 identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863; hypothetical protein 3495781 4289694 HNE_3345 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762018.1 3495062 D 228405 CDS YP_762019.1 114798630 4289889 complement(3495903..3496433) 1 NC_008358.1 hypothetical protein 3496433 4289889 HNE_3346 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762019.1 3495903 R 228405 CDS YP_762020.1 114799859 4287441 complement(3496498..3497373) 1 NC_008358.1 identified by similarity to GB:AAF35850.1; match to protein family HMM PF01618; chemotaxis MotA protein 3497373 4287441 HNE_3347 Hyphomonas neptunium ATCC 15444 chemotaxis MotA protein YP_762020.1 3496498 R 228405 CDS YP_762021.1 114798953 4289653 3497512..3498783 1 NC_008358.1 identified by match to protein family HMM PF07690; drug:H+ antiporter-1 family protein 3498783 4289653 HNE_3348 Hyphomonas neptunium ATCC 15444 drug:H+ antiporter-1 family protein YP_762021.1 3497512 D 228405 CDS YP_762022.1 114799549 4288534 complement(3498804..3500108) 1 NC_008358.1 identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283; lytic murein transglycosylase 3500108 4288534 HNE_3349 Hyphomonas neptunium ATCC 15444 lytic murein transglycosylase YP_762022.1 3498804 R 228405 CDS YP_762023.1 114798781 4287763 3500252..3500377 1 NC_008358.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 3500377 rpmJ 4287763 rpmJ Hyphomonas neptunium ATCC 15444 50S ribosomal protein L36 YP_762023.1 3500252 D 228405 CDS YP_762024.1 114797582 4286987 3500409..3501017 1 NC_008358.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 3501017 4286987 HNE_3351 Hyphomonas neptunium ATCC 15444 HAD family hydrolase YP_762024.1 3500409 D 228405 CDS YP_762025.1 114799283 4288598 3501087..3501623 1 NC_008358.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3501623 4288598 HNE_3352 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762025.1 3501087 D 228405 CDS YP_762026.1 114799194 4289949 3501629..3502576 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3502576 4289949 HNE_3353 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_762026.1 3501629 D 228405 CDS YP_762027.1 114798719 4290447 3502616..3502879 1 NC_008358.1 identified by similarity to GB:BAB50739.1; hypothetical protein 3502879 4290447 HNE_3354 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762027.1 3502616 D 228405 CDS YP_762028.1 114800017 4288809 3502929..3503435 1 NC_008358.1 hypothetical protein 3503435 4288809 HNE_3355 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762028.1 3502929 D 228405 CDS YP_762029.1 114797298 4289222 3503462..3504346 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 3504346 4289222 HNE_3356 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_762029.1 3503462 D 228405 CDS YP_762030.1 114798306 4289470 3504422..3505309 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 3505309 4289470 HNE_3357 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_762030.1 3504422 D 228405 CDS YP_762031.1 114797278 4290542 complement(3505300..3505614) 1 NC_008358.1 hypothetical protein 3505614 4290542 HNE_3358 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762031.1 3505300 R 228405 CDS YP_762032.1 114800316 4289250 3505583..3506545 1 NC_008358.1 identified by similarity to PIR:AE3417; match to protein family HMM PF00892; putative transporter 3506545 4289250 HNE_3359 Hyphomonas neptunium ATCC 15444 putative transporter YP_762032.1 3505583 D 228405 CDS YP_762033.1 114797778 4289622 3506694..3507716 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 3507716 4289622 HNE_3360 Hyphomonas neptunium ATCC 15444 NAD-dependent epimerase/dehydratase family protein YP_762033.1 3506694 D 228405 CDS YP_762034.1 114797311 4287516 3507891..3508355 1 NC_008358.1 identified by similarity to GB:BAC50417.1; putative lipoprotein 3508355 4287516 HNE_3361 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762034.1 3507891 D 228405 CDS YP_762035.1 114798616 4289875 complement(3508592..3509062) 1 NC_008358.1 hypothetical protein 3509062 4289875 HNE_3362 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762035.1 3508592 R 228405 CDS YP_762036.1 114798847 4287811 complement(3509068..3509451) 1 NC_008358.1 identified by similarity to GB:CAC45517.1; hypothetical protein 3509451 4287811 HNE_3363 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762036.1 3509068 R 228405 CDS YP_762037.1 114799534 4288927 complement(3509561..3510034) 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3510034 4288927 HNE_3364 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_762037.1 3509561 R 228405 CDS YP_762038.1 114800244 4287479 3510290..3511120 1 NC_008358.1 identified by similarity to SP:P25026; match to protein family HMM PF00561; chloride peroxidase 3511120 4287479 HNE_3365 Hyphomonas neptunium ATCC 15444 chloride peroxidase YP_762038.1 3510290 D 228405 CDS YP_762039.1 114797835 4288779 complement(3511193..3511402) 1 NC_008358.1 identified by similarity to GB:CAE25475.1; match to protein family HMM PF07896; hypothetical protein 3511402 4288779 HNE_3366 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762039.1 3511193 R 228405 CDS YP_762040.1 114798607 4289866 3511506..3512399 1 NC_008358.1 putative metalloprotease; heat shock protein HtpX 3512399 4289866 HNE_3367 Hyphomonas neptunium ATCC 15444 heat shock protein HtpX YP_762040.1 3511506 D 228405 CDS YP_762041.1 114799841 4290149 3512431..3513702 1 NC_008358.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM PF05175; putative ribosomal RNA small subunit methyltransferase B 3513702 4290149 HNE_3368 Hyphomonas neptunium ATCC 15444 putative ribosomal RNA small subunit methyltransferase B YP_762041.1 3512431 D 228405 CDS YP_762042.1 114798828 4287558 3513822..3514310 1 NC_008358.1 identified by match to protein family HMM PF05433; putative lipoprotein 3514310 4287558 HNE_3369 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762042.1 3513822 D 228405 CDS YP_762043.1 114797584 4286989 3514452..3515120 1 NC_008358.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 3515120 rpe 4286989 rpe Hyphomonas neptunium ATCC 15444 ribulose-phosphate 3-epimerase YP_762043.1 3514452 D 228405 CDS YP_762044.1 114797226 4287332 3515148..3516875 1 NC_008358.1 identified by match to protein family HMM PF07940; heparinase II/III-like family protein 3516875 4287332 HNE_3371 Hyphomonas neptunium ATCC 15444 heparinase II/III-like family protein YP_762044.1 3515148 D 228405 CDS YP_762045.1 114797222 4289939 3516969..3518558 1 NC_008358.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; bifunctional purine biosynthesis protein PurH 3518558 purH 4289939 purH Hyphomonas neptunium ATCC 15444 bifunctional purine biosynthesis protein PurH YP_762045.1 3516969 D 228405 CDS YP_762046.1 114797976 4288339 3518642..3518929 1 NC_008358.1 putative lipoprotein 3518929 4288339 HNE_3373 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762046.1 3518642 D 228405 CDS YP_762047.1 114800467 4288209 complement(3519321..3520220) 1 NC_008358.1 identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682; putative hydroxymethylglutaryl-CoA lyase 3520220 4288209 HNE_3374 Hyphomonas neptunium ATCC 15444 putative hydroxymethylglutaryl-CoA lyase YP_762047.1 3519321 R 228405 CDS YP_762048.1 114797855 4287125 complement(3520228..3521058) 1 NC_008358.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3521058 4287125 HNE_3375 Hyphomonas neptunium ATCC 15444 enoyl-CoA hydratase YP_762048.1 3520228 R 228405 CDS YP_762049.1 114797571 4287289 3521179..3521574 1 NC_008358.1 identified by match to protein family HMM PF01502; phosphoribosyl-AMP cyclohydrolase 3521574 4287289 HNE_3376 Hyphomonas neptunium ATCC 15444 phosphoribosyl-AMP cyclohydrolase YP_762049.1 3521179 D 228405 CDS YP_762050.1 114799156 4287008 3521600..3522505 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family lipoprotein 3522505 4287008 HNE_3377 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family lipoprotein YP_762050.1 3521600 D 228405 CDS YP_762051.1 114798755 4287990 complement(3522495..3524141) 1 NC_008358.1 identified by match to protein family HMM PF04087; hypothetical protein 3524141 4287990 HNE_3378 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762051.1 3522495 R 228405 CDS YP_762052.1 114800342 4289276 complement(3524229..3525929) 1 NC_008358.1 identified by similarity to GB:AAL17673.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; isobutyryl-CoA dehydrogenase 3525929 4289276 HNE_3379 Hyphomonas neptunium ATCC 15444 isobutyryl-CoA dehydrogenase YP_762052.1 3524229 R 228405 CDS YP_762053.1 114799744 4288028 complement(3526058..3526876) 1 NC_008358.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 3526876 4288028 HNE_3380 Hyphomonas neptunium ATCC 15444 short chain dehydrogenase/reductase family oxidoreductase YP_762053.1 3526058 R 228405 CDS YP_762054.1 114798760 4287995 3527048..3529534 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3529534 4287995 HNE_3381 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_762054.1 3527048 D 228405 CDS YP_762055.1 114799337 4290171 3529672..3530499 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3530499 4290171 HNE_3382 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_762055.1 3529672 D 228405 CDS YP_762056.1 114799917 4290247 complement(3530504..3531475) 1 NC_008358.1 identified by match to protein family HMM PF04199; putative cyclase 3531475 4290247 HNE_3383 Hyphomonas neptunium ATCC 15444 putative cyclase YP_762056.1 3530504 R 228405 CDS YP_762057.1 114797490 4289705 complement(3531540..3532487) 1 NC_008358.1 identified by similarity to PIR:G83164; hypothetical protein 3532487 4289705 HNE_3384 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762057.1 3531540 R 228405 CDS YP_762058.1 114798838 4287568 3532547..3533515 1 NC_008358.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589; ADA regulatory protein 3533515 ada 4287568 ada Hyphomonas neptunium ATCC 15444 ADA regulatory protein YP_762058.1 3532547 D 228405 CDS YP_762059.1 114800513 4288858 3533598..3534056 1 NC_008358.1 hypothetical protein 3534056 4288858 HNE_3386 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762059.1 3533598 D 228405 CDS YP_762060.1 114797712 4289362 3534053..3534526 1 NC_008358.1 identified by match to protein family HMM PF00903; putative lactoylglutathione lyase 3534526 4289362 HNE_3387 Hyphomonas neptunium ATCC 15444 putative lactoylglutathione lyase YP_762060.1 3534053 D 228405 CDS YP_762061.1 114798562 4287406 complement(3534658..3535182) 1 NC_008358.1 identified by similarity to SP:P37472; match to protein family HMM PF00156; hypoxanthine phosphoribosyltransferase 3535182 hpt 4287406 hpt Hyphomonas neptunium ATCC 15444 hypoxanthine phosphoribosyltransferase YP_762061.1 3534658 R 228405 CDS YP_762062.1 114799317 4287326 complement(3535188..3535934) 1 NC_008358.1 identified by match to protein family HMM TIGR02098; hypothetical protein 3535934 4287326 HNE_3389 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762062.1 3535188 R 228405 CDS YP_762063.1 114797092 4287959 3536001..3536759 1 NC_008358.1 identified by similarity to GB:AAK20881.1; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 3536759 ftsE 4287959 ftsE Hyphomonas neptunium ATCC 15444 cell division ATP-binding protein FtsE YP_762063.1 3536001 D 228405 CDS YP_762064.1 114797852 4287122 3536756..3537628 1 NC_008358.1 identified by match to protein family HMM PF02687; putative permease 3537628 4287122 HNE_3391 Hyphomonas neptunium ATCC 15444 putative permease YP_762064.1 3536756 D 228405 CDS YP_762065.1 114798585 4289515 3537674..3538414 1 NC_008358.1 identified by match to protein family HMM PF01553; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 3538414 4289515 HNE_3392 Hyphomonas neptunium ATCC 15444 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_762065.1 3537674 D 228405 CDS YP_762066.1 114799381 4288503 3538411..3539052 1 NC_008358.1 identified by match to protein family HMM PF00730; putative DNA-3-methyladenine glycosylase 3539052 4288503 HNE_3393 Hyphomonas neptunium ATCC 15444 putative DNA-3-methyladenine glycosylase YP_762066.1 3538411 D 228405 CDS YP_762067.1 114800298 4287943 3539176..3539769 1 NC_008358.1 identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 3539769 4287943 HNE_3394 Hyphomonas neptunium ATCC 15444 HNH endonuclease domain-containing protein YP_762067.1 3539176 D 228405 CDS YP_762068.1 114800135 4290468 complement(3539742..3541592) 1 NC_008358.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 3541592 4290468 HNE_3395 Hyphomonas neptunium ATCC 15444 dolichyl-phosphate-mannose-protein mannosyltransferase YP_762068.1 3539742 R 228405 CDS YP_762069.1 114799537 4288522 3541774..3542544 1 NC_008358.1 identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3542544 4288522 HNE_3396 Hyphomonas neptunium ATCC 15444 glycosyl transferase group 2 family protein YP_762069.1 3541774 D 228405 CDS YP_762070.1 114798829 4287559 complement(3542551..3543291) 1 NC_008358.1 identified by similarity to SP:Q52720; match to protein family HMM PF02630; SCO1/SenC family protein 3543291 4287559 HNE_3397 Hyphomonas neptunium ATCC 15444 SCO1/SenC family protein YP_762070.1 3542551 R 228405 CDS YP_762071.1 114799590 4289086 3543239..3544606 1 NC_008358.1 identified by similarity to GB:AAF01775.3; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3544606 4289086 HNE_3398 Hyphomonas neptunium ATCC 15444 sensor histidine kinase YP_762071.1 3543239 D 228405 CDS YP_762072.1 114797184 4287054 3544666..3545238 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199; DNA-binding response regulator RegA 3545238 regA 4287054 regA Hyphomonas neptunium ATCC 15444 DNA-binding response regulator RegA YP_762072.1 3544666 D 228405 CDS YP_762073.1 114798739 4289302 complement(3545242..3546183) 1 NC_008358.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807; prephenate dehydrogenase 3546183 4289302 HNE_3400 Hyphomonas neptunium ATCC 15444 prephenate dehydrogenase YP_762073.1 3545242 R 228405 CDS YP_762074.1 114797487 4289702 3546307..3546696 1 NC_008358.1 hypothetical protein 3546696 4289702 HNE_3401 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762074.1 3546307 D 228405 CDS YP_762075.1 114800276 4287921 3546911..3547381 1 NC_008358.1 identified by similarity to GB:AAK22457.1; hypothetical protein 3547381 4287921 HNE_3402 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762075.1 3546911 D 228405 CDS YP_762076.1 114798839 4287803 complement(3547412..3548002) 1 NC_008358.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848; polyhydroxyalkanoate synthesis repressor PhaR 3548002 phaR 4287803 phaR Hyphomonas neptunium ATCC 15444 polyhydroxyalkanoate synthesis repressor PhaR YP_762076.1 3547412 R 228405 CDS YP_762077.1 114798054 4289529 3548159..3548884 1 NC_008358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01829; acetoacetyl-CoA reductase 3548884 phbB 4289529 phbB Hyphomonas neptunium ATCC 15444 acetoacetyl-CoA reductase YP_762077.1 3548159 D 228405 CDS YP_762078.1 114798676 4289857 complement(3548996..3549445) 1 NC_008358.1 identified by similarity to GB:AAK22505.1; match to protein family HMM PF06172; hypothetical protein 3549445 4289857 HNE_3405 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762078.1 3548996 R 228405 CDS YP_762079.1 114797885 4288675 complement(3549445..3550215) 1 NC_008358.1 identified by similarity to SP:O24496; match to protein family HMM PF00753; putative hydroxyacylglutathione hydrolase 3550215 4288675 HNE_3406 Hyphomonas neptunium ATCC 15444 putative hydroxyacylglutathione hydrolase YP_762079.1 3549445 R 228405 CDS YP_762080.1 114800073 4289396 3550272..3551015 1 NC_008358.1 identified by similarity to GB:AAN30876.1; hypothetical protein 3551015 4289396 HNE_3407 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762080.1 3550272 D 228405 CDS YP_762081.1 114799395 4288517 3551080..3551424 1 NC_008358.1 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 3551424 4288517 HNE_3408 Hyphomonas neptunium ATCC 15444 nitrogen regulatory protein P-II YP_762081.1 3551080 D 228405 CDS YP_762082.1 114798169 4287658 complement(3551484..3552680) 1 NC_008358.1 identified by match to protein family HMM PF01551; M23 family peptidase 3552680 4287658 HNE_3409 Hyphomonas neptunium ATCC 15444 M23 family peptidase YP_762082.1 3551484 R 228405 CDS YP_762083.1 114797716 4289231 complement(3552680..3553345) 1 NC_008358.1 putative lipoprotein 3553345 4289231 HNE_3410 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762083.1 3552680 R 228405 CDS YP_762084.1 114797973 4288336 complement(3553342..3554001) 1 NC_008358.1 hypothetical protein 3554001 4288336 HNE_3411 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762084.1 3553342 R 228405 CDS YP_762085.1 114799165 4287017 complement(3554003..3556321) 1 NC_008358.1 identified by match to protein family HMM PF00082; subtilase family protein 3556321 4287017 HNE_3412 Hyphomonas neptunium ATCC 15444 subtilase family protein YP_762085.1 3554003 R 228405 CDS YP_762086.1 114798107 4289602 complement(3556432..3556887) 1 NC_008358.1 identified by similarity to GB:AAK22107.1; match to protein family HMM PF01980; hypothetical protein 3556887 4289602 HNE_3413 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762086.1 3556432 R 228405 CDS YP_762087.1 114800508 4288853 3557019..3557504 1 NC_008358.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 3557504 4288853 HNE_3414 Hyphomonas neptunium ATCC 15444 pentapeptide repeat-containing protein YP_762087.1 3557019 D 228405 CDS YP_762088.1 114800036 4288828 3557539..3560412 1 NC_008358.1 identified by similarity to GB:CAA90562.1; match to protein family HMM PF00271; putative helicase 3560412 4288828 HNE_3415 Hyphomonas neptunium ATCC 15444 putative helicase YP_762088.1 3557539 D 228405 CDS YP_762089.1 114799054 4288953 3560426..3560713 1 NC_008358.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 3560713 4288953 HNE_3416 Hyphomonas neptunium ATCC 15444 S4 domain-containing protein YP_762089.1 3560426 D 228405 CDS YP_762090.1 114797520 4289481 3560710..3561156 1 NC_008358.1 identified by match to protein family HMM PF07049; hypothetical protein 3561156 4289481 HNE_3417 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762090.1 3560710 D 228405 CDS YP_762091.1 114799500 4288893 3561255..3561596 1 NC_008358.1 identified by similarity to GB:AAA85787.1; match to protein family HMM PF00037; ferredoxin 3561596 fdxA 4288893 fdxA Hyphomonas neptunium ATCC 15444 ferredoxin YP_762091.1 3561255 D 228405 CDS YP_762092.1 114799783 4289800 3561882..3562406 1 NC_008358.1 identified by match to protein family HMM PF02559; CarD family transcriptional regulator 3562406 4289800 HNE_3419 Hyphomonas neptunium ATCC 15444 CarD family transcriptional regulator YP_762092.1 3561882 D 228405 CDS YP_762093.1 114797093 4287960 3562565..3563305 1 NC_008358.1 hypothetical protein 3563305 4287960 HNE_3420 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762093.1 3562565 D 228405 CDS YP_762094.1 114797812 4288465 3563395..3563811 1 NC_008358.1 identified by similarity to GB:BAC48320.1; match to protein family HMM PF04828; hypothetical protein 3563811 4288465 HNE_3421 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762094.1 3563395 D 228405 CDS YP_762095.1 114798583 4289513 complement(3563928..3564044) 1 NC_008358.1 hypothetical protein 3564044 4289513 HNE_3422 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762095.1 3563928 R 228405 CDS YP_762096.1 114799056 4288955 3564043..3564312 1 NC_008358.1 hypothetical protein 3564312 4288955 HNE_3423 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762096.1 3564043 D 228405 CDS YP_762097.1 114800044 4289367 complement(3564320..3565501) 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3565501 4289367 HNE_3424 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_762097.1 3564320 R 228405 CDS YP_762098.1 114797901 4288089 complement(3565595..3566011) 1 NC_008358.1 identified by match to protein family HMM PF00903; glyoxalase family protein 3566011 4288089 HNE_3425 Hyphomonas neptunium ATCC 15444 glyoxalase family protein YP_762098.1 3565595 R 228405 CDS YP_762099.1 114798478 4288761 3566093..3566548 1 NC_008358.1 identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 3566548 soxR 4288761 soxR Hyphomonas neptunium ATCC 15444 redox-sensitive transcriptional activator SoxR YP_762099.1 3566093 D 228405 CDS YP_762100.1 114799539 4288524 complement(3566555..3568123) 1 NC_008358.1 identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase 3568123 fcs5 4288524 fcs5 Hyphomonas neptunium ATCC 15444 feruloyl-CoA synthetase YP_762100.1 3566555 R 228405 CDS YP_762101.1 114800268 4287503 3568322..3569170 1 NC_008358.1 identified by similarity to GB:AAS43651.1; hypothetical protein 3569170 4287503 HNE_3428 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762101.1 3568322 D 228405 CDS YP_762102.1 114799184 4288401 3569216..3570502 1 NC_008358.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3570502 proA 4288401 proA Hyphomonas neptunium ATCC 15444 gamma-glutamyl phosphate reductase YP_762102.1 3569216 D 228405 CDS YP_762103.1 114798022 4290078 3570499..3571086 1 NC_008358.1 identified by match to protein family HMM PF01467; nicotinate (nicotinamide) nucleotide adenylyltransferase 3571086 nadD 4290078 nadD Hyphomonas neptunium ATCC 15444 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_762103.1 3570499 D 228405 CDS YP_762104.1 114797177 4287047 3571083..3571823 1 NC_008358.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; putative molybdopterin biosynthesis protein MoeB 3571823 4287047 HNE_3431 Hyphomonas neptunium ATCC 15444 putative molybdopterin biosynthesis protein MoeB YP_762104.1 3571083 D 228405 CDS YP_762105.1 114800369 4288732 3571899..3572900 1 NC_008358.1 identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3572900 4288732 HNE_3432 Hyphomonas neptunium ATCC 15444 alpha/beta fold family hydrolase YP_762105.1 3571899 D 228405 CDS YP_762106.1 114798669 4289850 complement(3572930..3573916) 1 NC_008358.1 identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase 3573916 gyaR 4289850 gyaR Hyphomonas neptunium ATCC 15444 glyoxylate reductase YP_762106.1 3572930 R 228405 CDS YP_762107.1 114797532 4289493 3574054..3574632 1 NC_008358.1 identified by similarity to GB:BAB51997.1; match to protein family HMM PF06347; hypothetical protein 3574632 4289493 HNE_3434 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762107.1 3574054 D 228405 CDS YP_762108.1 114800283 4287928 3574690..3575244 1 NC_008358.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3575244 fabZ 4287928 fabZ Hyphomonas neptunium ATCC 15444 3-hydroxydecanoyl-ACP dehydratase YP_762108.1 3574690 D 228405 CDS YP_762109.1 114799930 4290084 3575314..3576132 1 NC_008358.1 identified by match to protein family HMM PF00106; enoyl-(acyl carrier protein) reductase 3576132 4290084 HNE_3436 Hyphomonas neptunium ATCC 15444 enoyl-(acyl carrier protein) reductase YP_762109.1 3575314 D 228405 CDS YP_762110.1 114798694 4289764 3576377..3576634 1 NC_008358.1 identified by similarity to PIR:AI2738; hypothetical protein 3576634 4289764 HNE_3437 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762110.1 3576377 D 228405 CDS YP_762111.1 114799628 4290268 3576689..3577138 1 NC_008358.1 identified by similarity to GB:AAQ60449.1; match to protein family HMM PF04828; hypothetical protein 3577138 4290268 HNE_3438 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762111.1 3576689 D 228405 CDS YP_762112.1 114797873 4288663 complement(3577889..3578716) 1 NC_008358.1 identified by match to protein family HMM PF00188; SCP-like extracellular family protein 3578716 4288663 HNE_3439 Hyphomonas neptunium ATCC 15444 SCP-like extracellular family protein YP_762112.1 3577889 R 228405 CDS YP_762113.1 114800418 4290362 complement(3578779..3579465) 1 NC_008358.1 identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235; putative uridine kinase 3579465 4290362 HNE_3440 Hyphomonas neptunium ATCC 15444 putative uridine kinase YP_762113.1 3578779 R 228405 CDS YP_762114.1 114798182 4288000 complement(3579558..3581699) 1 NC_008358.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase 3581699 pnpA 4288000 pnpA Hyphomonas neptunium ATCC 15444 polynucleotide phosphorylase/polyadenylase YP_762114.1 3579558 R 228405 CDS YP_762115.1 114797457 4288577 complement(3581768..3582037) 1 NC_008358.1 identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 3582037 rpsO 4288577 rpsO Hyphomonas neptunium ATCC 15444 30S ribosomal protein S15 YP_762115.1 3581768 R 228405 CDS YP_762116.1 114797473 4288418 complement(3582083..3582202) 1 NC_008358.1 hypothetical protein 3582202 4288418 HNE_3443 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762116.1 3582083 R 228405 CDS YP_762117.1 114799721 4289139 3582333..3582701 1 NC_008358.1 putative lipoprotein 3582701 4289139 HNE_3444 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762117.1 3582333 D 228405 CDS YP_762118.1 114799010 4288442 3582725..3583195 1 NC_008358.1 identified by similarity to GB:AAR33584.1; hypothetical protein 3583195 4288442 HNE_3445 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762118.1 3582725 D 228405 CDS YP_762119.1 114798666 4289847 3583402..3584340 1 NC_008358.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 3584340 4289847 HNE_3446 Hyphomonas neptunium ATCC 15444 ISHne3, transposase YP_762119.1 3583402 D 228405 CDS YP_762120.1 114799060 4288959 complement(3585322..3586614) 1 NC_008358.1 identified by similarity to SP:P13254; match to protein family HMM PF01053; methionine gamma-lyase 3586614 mdeA 4288959 mdeA Hyphomonas neptunium ATCC 15444 methionine gamma-lyase YP_762120.1 3585322 R 228405 CDS YP_762121.1 114798157 4290390 3586724..3587515 1 NC_008358.1 identified by match to protein family HMM PF00565; thermonuclease family protein 3587515 4290390 HNE_3449 Hyphomonas neptunium ATCC 15444 thermonuclease family protein YP_762121.1 3586724 D 228405 CDS YP_762122.1 114798150 4290383 complement(3587521..3588408) 1 NC_008358.1 identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; putative alternative sigma factor RpoH 3588408 4290383 HNE_3450 Hyphomonas neptunium ATCC 15444 putative alternative sigma factor RpoH YP_762122.1 3587521 R 228405 CDS YP_762123.1 114798968 4287425 3588598..3589083 1 NC_008358.1 identified by similarity to GB:AAK25429.1; match to protein family HMM PF06319; hypothetical protein 3589083 4287425 HNE_3451 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762123.1 3588598 D 228405 CDS YP_762124.1 114799752 4288036 3589080..3589526 1 NC_008358.1 hypothetical protein 3589526 4288036 HNE_3452 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762124.1 3589080 D 228405 CDS YP_762125.1 114797906 4287256 complement(3589530..3590597) 1 NC_008358.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle; citrate synthase 2 3590597 4287256 HNE_3453 Hyphomonas neptunium ATCC 15444 citrate synthase 2 YP_762125.1 3589530 R 228405 CDS YP_762126.1 114797889 4288077 3590675..3591805 1 NC_008358.1 identified by match to protein family HMM PF00285; citrate synthase family protein 3591805 4288077 HNE_3454 Hyphomonas neptunium ATCC 15444 citrate synthase family protein YP_762126.1 3590675 D 228405 CDS YP_762127.1 114798491 4287744 complement(3591807..3593780) 1 NC_008358.1 identified by similarity to SP:P27302; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 3593780 tkt 4287744 tkt Hyphomonas neptunium ATCC 15444 transketolase YP_762127.1 3591807 R 228405 CDS YP_762128.1 114799291 4289016 3593866..3594180 1 NC_008358.1 identified by similarity to GB:CAE26390.1; hypothetical protein 3594180 4289016 HNE_3456 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762128.1 3593866 D 228405 CDS YP_762129.1 114800282 4287927 3594167..3594478 1 NC_008358.1 identified by similarity to GB:BAC46791.1; match to protein family HMM PF05164; hypothetical protein 3594478 4287927 HNE_3457 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762129.1 3594167 D 228405 CDS YP_762130.1 114800140 4290473 3594475..3595182 1 NC_008358.1 hypothetical protein 3595182 4290473 HNE_3458 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762130.1 3594475 D 228405 CDS YP_762131.1 114800379 4288742 3595196..3595408 1 NC_008358.1 identified by similarity to PIR:C98285; hypothetical protein 3595408 4288742 HNE_3459 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762131.1 3595196 D 228405 CDS YP_762132.1 114797243 4287349 3595428..3596000 1 NC_008358.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; putative ATP:cob(I)alamin adenosyltransferase 3596000 4287349 HNE_3460 Hyphomonas neptunium ATCC 15444 putative ATP:cob(I)alamin adenosyltransferase YP_762132.1 3595428 D 228405 CDS YP_762133.1 114798378 4288370 complement(3596004..3596966) 1 NC_008358.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 3596966 4288370 HNE_3461 Hyphomonas neptunium ATCC 15444 metallo-beta-lactamase family protein YP_762133.1 3596004 R 228405 CDS YP_762134.1 114800374 4288737 complement(3597034..3599718) 1 NC_008358.1 identified by similarity to GB:AAV93653.1; hypothetical protein 3599718 4288737 HNE_3462 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762134.1 3597034 R 228405 CDS YP_762135.1 114799974 4290189 complement(3599697..3600971) 1 NC_008358.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 3600971 lysA 4290189 lysA Hyphomonas neptunium ATCC 15444 diaminopimelate decarboxylase YP_762135.1 3599697 R 228405 CDS YP_762136.1 114800174 4290018 complement(3600984..3601211) 1 NC_008358.1 putative lipoprotein 3601211 4290018 HNE_3464 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762136.1 3600984 R 228405 CDS YP_762137.1 114798021 4290077 complement(3601452..3602849) 1 NC_008358.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838; argininosuccinate lyase 3602849 argH 4290077 argH Hyphomonas neptunium ATCC 15444 argininosuccinate lyase YP_762137.1 3601452 R 228405 CDS YP_762138.1 114799212 4289581 3602896..3603486 1 NC_008358.1 identified by similarity to SP:P43221; putative thiol:disulfide interchange protein 3603486 4289581 HNE_3466 Hyphomonas neptunium ATCC 15444 putative thiol:disulfide interchange protein YP_762138.1 3602896 D 228405 CDS YP_762139.1 114799390 4288512 3603811..3604293 1 NC_008358.1 hypothetical protein 3604293 4288512 HNE_3467 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762139.1 3603811 D 228405 CDS YP_762140.1 114799034 4290512 complement(3604300..3604794) 1 NC_008358.1 identified by match to protein family HMM PF00565; putative nuclease 3604794 4290512 HNE_3468 Hyphomonas neptunium ATCC 15444 putative nuclease YP_762140.1 3604300 R 228405 CDS YP_762141.1 114797883 4288673 complement(3604911..3605789) 1 NC_008358.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 3605789 4288673 HNE_3469 Hyphomonas neptunium ATCC 15444 3-hydroxybutyryl-CoA dehydrogenase YP_762141.1 3604911 R 228405 CDS YP_762142.1 114797076 4287357 complement(3605943..3606872) 1 NC_008358.1 identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 3606872 etfA 4287357 etfA Hyphomonas neptunium ATCC 15444 electron transfer flavoprotein subunit alpha YP_762142.1 3605943 R 228405 CDS YP_762143.1 114799429 4289333 complement(3606872..3607618) 1 NC_008358.1 identified by similarity to SP:P38975; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 3607618 eftB 4289333 eftB Hyphomonas neptunium ATCC 15444 electron transfer flavoprotein subunit beta YP_762143.1 3606872 R 228405 CDS YP_762144.1 114800401 4290345 complement(3607747..3609000) 1 NC_008358.1 identified by match to protein family HMM TIGR01499; putative folylpolyglutamate synthase 3609000 4290345 HNE_3472 Hyphomonas neptunium ATCC 15444 putative folylpolyglutamate synthase YP_762144.1 3607747 R 228405 CDS YP_762145.1 114797289 4289213 complement(3608997..3609977) 1 NC_008358.1 acetyl-CoA carboxylase carboxyl transferase subunit beta 3609977 accD 4289213 accD Hyphomonas neptunium ATCC 15444 acetyl-CoA carboxylase carboxyl transferase subunit beta YP_762145.1 3608997 R 228405 CDS YP_762146.1 114798201 4287825 complement(3610008..3610835) 1 NC_008358.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha 3610835 trpA 4287825 trpA Hyphomonas neptunium ATCC 15444 tryptophan synthase subunit alpha YP_762146.1 3610008 R 228405 CDS YP_762147.1 114798841 4287805 complement(3610838..3611158) 1 NC_008358.1 identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent-cation tolerance protein CutA 3611158 cutA 4287805 cutA Hyphomonas neptunium ATCC 15444 divalent-cation tolerance protein CutA YP_762147.1 3610838 R 228405 CDS YP_762148.1 114799821 4290129 complement(3611155..3612366) 1 NC_008358.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3612366 trpB 4290129 trpB Hyphomonas neptunium ATCC 15444 tryptophan synthase subunit beta YP_762148.1 3611155 R 228405 CDS YP_762149.1 114797372 4287303 complement(3612405..3613040) 1 NC_008358.1 identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase 3613040 trpF 4287303 trpF Hyphomonas neptunium ATCC 15444 N-(5'phosphoribosyl)anthranilate isomerase YP_762149.1 3612405 R 228405 CDS YP_762150.1 114797543 4287378 3613303..3613953 1 NC_008358.1 identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 3613953 msrA2 4287378 msrA2 Hyphomonas neptunium ATCC 15444 methionine-S-sulfoxide reductase YP_762150.1 3613303 D 228405 CDS YP_762151.1 114800216 4288990 complement(3613969..3614958) 1 NC_008358.1 hypothetical protein 3614958 4288990 HNE_3480 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762151.1 3613969 R 228405 CDS YP_762152.1 114799552 4288537 3615111..3615956 1 NC_008358.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3615956 4288537 HNE_3481 Hyphomonas neptunium ATCC 15444 glutamyl-Q tRNA(Asp) synthetase YP_762152.1 3615111 D 228405 CDS YP_762153.1 114797206 4287077 3615953..3616885 1 NC_008358.1 identified by similarity to PIR:AF3578; match to protein family HMM PF00892; putative transporter 3616885 4287077 HNE_3482 Hyphomonas neptunium ATCC 15444 putative transporter YP_762153.1 3615953 D 228405 CDS YP_762154.1 114799748 4288032 3616953..3618542 1 NC_008358.1 identified by match to protein family HMM PF00245; alkaline phosphatase 3618542 4288032 HNE_3483 Hyphomonas neptunium ATCC 15444 alkaline phosphatase YP_762154.1 3616953 D 228405 CDS YP_762155.1 114799141 4287795 complement(3618551..3618991) 1 NC_008358.1 hypothetical protein 3618991 4287795 HNE_3484 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762155.1 3618551 R 228405 CDS YP_762156.1 114798593 4290496 3619094..3619909 1 NC_008358.1 identified by match to protein family HMM PF01381; DNA-binding protein 3619909 4290496 HNE_3485 Hyphomonas neptunium ATCC 15444 DNA-binding protein YP_762156.1 3619094 D 228405 CDS YP_762157.1 114797810 4288463 3619995..3621095 1 NC_008358.1 identified by similarity to GB:AAK24991.1; match to protein family HMM PF00107; class III alcohol dehydrogenase 3621095 4288463 HNE_3486 Hyphomonas neptunium ATCC 15444 class III alcohol dehydrogenase YP_762157.1 3619995 D 228405 CDS YP_762158.1 114799952 4290107 3621155..3621865 1 NC_008358.1 hypothetical protein 3621865 4290107 HNE_3487 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762158.1 3621155 D 228405 CDS YP_762159.1 114799261 4289691 complement(3621862..3622911) 1 NC_008358.1 identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate oxidase 3622911 pyrD 4289691 pyrD Hyphomonas neptunium ATCC 15444 dihydroorotate oxidase YP_762159.1 3621862 R 228405 CDS YP_762160.1 114800306 4287951 complement(3622908..3623252) 1 NC_008358.1 identified by match to protein family HMM PF06108; hypothetical protein 3623252 4287951 HNE_3489 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762160.1 3622908 R 228405 CDS YP_762161.1 114799277 4288592 complement(3623297..3625255) 1 NC_008358.1 hypothetical protein 3625255 4288592 HNE_3490 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762161.1 3623297 R 228405 CDS YP_762162.1 114799175 4288392 3625430..3626671 1 NC_008358.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 3626671 argG 4288392 argG Hyphomonas neptunium ATCC 15444 argininosuccinate synthase YP_762162.1 3625430 D 228405 CDS YP_762163.1 114798272 4287252 complement(3626752..3627315) 1 NC_008358.1 hypothetical protein 3627315 4287252 HNE_3492 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762163.1 3626752 R 228405 CDS YP_762164.1 114797802 4288066 complement(3627686..3629677) 1 NC_008358.1 identified by similarity to SP:P29934; match to protein family HMM PF06213; match to protein family HMM TIGR01651; cobaltochelatase subunit CobT 3629677 cobT 4288066 cobT Hyphomonas neptunium ATCC 15444 cobaltochelatase subunit CobT YP_762164.1 3627686 R 228405 CDS YP_762165.1 114799817 4290125 complement(3629708..3630691) 1 NC_008358.1 identified by similarity to SP:P29933; match to protein family HMM TIGR01650; cobaltochelatase subunit CobS 3630691 cobS 4290125 cobS Hyphomonas neptunium ATCC 15444 cobaltochelatase subunit CobS YP_762165.1 3629708 R 228405 CDS YP_762166.1 114799305 4287314 3630848..3632131 1 NC_008358.1 hypothetical protein 3632131 4287314 HNE_3495 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762166.1 3630848 D 228405 CDS YP_762167.1 114798714 4290442 complement(3632144..3632761) 1 NC_008358.1 identified by similarity to SP:Q93P63; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 3632761 msrA3 4290442 msrA3 Hyphomonas neptunium ATCC 15444 methionine-S-sulfoxide reductase YP_762167.1 3632144 R 228405 CDS YP_762168.1 114799630 4290270 complement(3632878..3634533) 1 NC_008358.1 identified by match to protein family HMM PF07969; putative lipoprotein 3634533 4290270 HNE_3497 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762168.1 3632878 R 228405 CDS YP_762169.1 114799496 4289187 complement(3634765..3635049) 1 NC_008358.1 identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein 3635049 rpmB 4289187 rpmB Hyphomonas neptunium ATCC 15444 50S ribosomal protein YP_762169.1 3634765 R 228405 CDS YP_762170.1 114800078 4289401 3635328..3636221 1 NC_008358.1 identified by similarity to GB:BAB50418.1; hypothetical protein 3636221 4289401 HNE_3499 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762170.1 3635328 D 228405 CDS YP_762171.1 114799098 4289197 complement(3636243..3637268) 1 NC_008358.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 3637268 4289197 HNE_3500 Hyphomonas neptunium ATCC 15444 RluA family pseudouridine synthase YP_762171.1 3636243 R 228405 CDS YP_762172.1 114798024 4287179 3637362..3639047 1 NC_008358.1 identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409; alkaline phosphatase 3639047 phoD2 4287179 phoD2 Hyphomonas neptunium ATCC 15444 alkaline phosphatase YP_762172.1 3637362 D 228405 CDS YP_762173.1 114797252 4288450 complement(3639044..3639802) 1 NC_008358.1 oxidoreductase-like protein 3639802 4288450 HNE_3502 Hyphomonas neptunium ATCC 15444 oxidoreductase-like protein YP_762173.1 3639044 R 228405 CDS YP_762174.1 114797747 4288284 complement(3639910..3640131) 1 NC_008358.1 identified by similarity to GB:AAK25253.1; match to protein family HMM PF04325; hypothetical protein 3640131 4288284 HNE_3503 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762174.1 3639910 R 228405 CDS YP_762175.1 114799892 4290221 complement(3640179..3640865) 1 NC_008358.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3640865 4290221 HNE_3504 Hyphomonas neptunium ATCC 15444 diguanylate cyclase YP_762175.1 3640179 R 228405 CDS YP_762176.1 114799300 4289025 complement(3640875..3641030) 1 NC_008358.1 hypothetical protein 3641030 4289025 HNE_3505 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762176.1 3640875 R 228405 CDS YP_762177.1 114798773 4289838 3640999..3641493 1 NC_008358.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 3641493 purE 4289838 purE Hyphomonas neptunium ATCC 15444 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_762177.1 3640999 D 228405 CDS YP_762178.1 114800267 4287502 3641490..3642569 1 NC_008358.1 identified by match to protein family HMM PF02222; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase ATPase subunit 3642569 purK 4287502 purK Hyphomonas neptunium ATCC 15444 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_762178.1 3641490 D 228405 CDS YP_762179.1 114797561 4287279 3642574..3643329 1 NC_008358.1 identified by match to protein family HMM PF02633; creatininase 3643329 4287279 HNE_3508 Hyphomonas neptunium ATCC 15444 creatininase YP_762179.1 3642574 D 228405 CDS YP_762180.1 114797705 4289355 3643428..3644159 1 NC_008358.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3644159 4289355 HNE_3509 Hyphomonas neptunium ATCC 15444 ABC transporter ATP-binding protein YP_762180.1 3643428 D 228405 CDS YP_762181.1 114798656 4290402 3644180..3644914 1 NC_008358.1 identified by similarity to GB:AAU92171.1; putative ABC transporter permease 3644914 4290402 HNE_3510 Hyphomonas neptunium ATCC 15444 putative ABC transporter permease YP_762181.1 3644180 D 228405 CDS YP_762182.1 114799662 4288684 3644945..3646813 1 NC_008358.1 identified by similarity to PIR:A83188; hypothetical protein 3646813 4288684 HNE_3511 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762182.1 3644945 D 228405 CDS YP_762183.1 114799832 4290140 3646810..3647862 1 NC_008358.1 hypothetical protein 3647862 4290140 HNE_3512 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762183.1 3646810 D 228405 CDS YP_762184.1 114798088 4288236 complement(3647863..3648510) 1 NC_008358.1 identified by similarity to GB:BAB51019.1; hypothetical protein 3648510 4288236 HNE_3513 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762184.1 3647863 R 228405 CDS YP_762185.1 114799040 4290518 complement(3648618..3651380) 1 NC_008358.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 3651380 acnA 4290518 acnA Hyphomonas neptunium ATCC 15444 aconitate hydratase YP_762185.1 3648618 R 228405 CDS YP_762186.1 114800037 4288829 3651552..3652133 1 NC_008358.1 identified by similarity to SP:P33931; match to protein family HMM PF00005; match to protein family HMM TIGR01189; heme exporter protein CcmA 3652133 ccmA 4288829 ccmA Hyphomonas neptunium ATCC 15444 heme exporter protein CcmA YP_762186.1 3651552 D 228405 CDS YP_762187.1 114800180 4290024 3652130..3652795 1 NC_008358.1 identified by match to protein family HMM PF03379; heme exporter protein CcmB 3652795 ccmB 4290024 ccmB Hyphomonas neptunium ATCC 15444 heme exporter protein CcmB YP_762187.1 3652130 D 228405 CDS YP_762188.1 114800532 4288877 3652819..3653547 1 NC_008358.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein CcmC 3653547 ccmC 4288877 ccmC Hyphomonas neptunium ATCC 15444 heme exporter protein CcmC YP_762188.1 3652819 D 228405 CDS YP_762189.1 114798547 4288112 3653551..3653709 1 NC_008358.1 putative lipoprotein 3653709 4288112 HNE_3518 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762189.1 3653551 D 228405 CDS YP_762190.1 114799338 4290172 3653706..3654230 1 NC_008358.1 identified by similarity to SP:P33926; putative thiol:disulfide interchange protein 3654230 4290172 HNE_3519 Hyphomonas neptunium ATCC 15444 putative thiol:disulfide interchange protein YP_762190.1 3653706 D 228405 CDS YP_762191.1 114797467 4288412 complement(3654253..3654891) 1 NC_008358.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3654891 4288412 HNE_3520 Hyphomonas neptunium ATCC 15444 MarR family transcriptional regulator YP_762191.1 3654253 R 228405 CDS YP_762192.1 114799173 4288390 3655083..3655598 1 NC_008358.1 identified by match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 3655598 4288390 HNE_3521 Hyphomonas neptunium ATCC 15444 NUDIX family NudH subfamily hydrolase YP_762192.1 3655083 D 228405 CDS YP_762193.1 114798221 4288602 complement(3655588..3656349) 1 NC_008358.1 putative intracellular septation protein A 3656349 4288602 HNE_3522 Hyphomonas neptunium ATCC 15444 putative intracellular septation protein A YP_762193.1 3655588 R 228405 CDS YP_762194.1 114799708 4289126 complement(3656429..3657289) 1 NC_008358.1 identified by match to protein family HMM PF00892; hypothetical protein 3657289 4289126 HNE_3523 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762194.1 3656429 R 228405 CDS YP_762195.1 114797795 4288059 3657579..3658442 1 NC_008358.1 identified by similarity to GB:BAB51678.1; hypothetical protein 3658442 4288059 HNE_3524 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762195.1 3657579 D 228405 CDS YP_762196.1 114798786 4287768 3658543..3660282 1 NC_008358.1 identified by match to protein family HMM PF07908; match to protein family HMM PF07969; amidohydrolase 3660282 4287768 HNE_3525 Hyphomonas neptunium ATCC 15444 amidohydrolase YP_762196.1 3658543 D 228405 CDS YP_762197.1 114799634 4290274 complement(3660286..3661530) 1 NC_008358.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 3661530 ftsY 4290274 ftsY Hyphomonas neptunium ATCC 15444 signal recognition particle-docking protein FtsY YP_762197.1 3660286 R 228405 CDS YP_762198.1 114800325 4289259 complement(3661527..3662804) 1 NC_008358.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; tRNA-i(6)A37 thiotransferase enzyme MiaB 3662804 4289259 HNE_3527 Hyphomonas neptunium ATCC 15444 tRNA-i(6)A37 thiotransferase enzyme MiaB YP_762198.1 3661527 R 228405 CDS YP_762199.1 114799327 4290161 complement(3662876..3663334) 1 NC_008358.1 hypothetical protein 3663334 4290161 HNE_3528 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762199.1 3662876 R 228405 CDS YP_762200.1 114797495 4289710 complement(3663413..3664222) 1 NC_008358.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3664222 dapF 4289710 dapF Hyphomonas neptunium ATCC 15444 diaminopimelate epimerase YP_762200.1 3663413 R 228405 CDS YP_762201.1 114798732 4289295 complement(3664277..3664693) 1 NC_008358.1 hypothetical protein 3664693 4289295 HNE_3530 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762201.1 3664277 R 228405 CDS YP_762202.1 114798842 4287806 complement(3664725..3665777) 1 NC_008358.1 identified by match to protein family HMM PF01575; MaoC domain-containing protein 3665777 4287806 HNE_3531 Hyphomonas neptunium ATCC 15444 MaoC domain-containing protein YP_762202.1 3664725 R 228405 CDS YP_762203.1 114800343 4289277 complement(3665825..3666094) 1 NC_008358.1 hypothetical protein 3666094 4289277 HNE_3532 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762203.1 3665825 R 228405 CDS YP_762204.1 114797794 4288058 complement(3666180..3666527) 1 NC_008358.1 identified by match to protein family HMM PF03960; putative arsenate reductase 3666527 4288058 HNE_3533 Hyphomonas neptunium ATCC 15444 putative arsenate reductase YP_762204.1 3666180 R 228405 CDS YP_762205.1 114799185 4288402 complement(3666591..3667469) 1 NC_008358.1 identified by similarity to SP:P77770; match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate lyase subunit beta 3667469 citE 4288402 citE Hyphomonas neptunium ATCC 15444 citrate lyase subunit beta YP_762205.1 3666591 R 228405 CDS YP_762206.1 114799299 4289024 3667523..3667999 1 NC_008358.1 identified by match to protein family HMM PF00583; acetyltransferase 3667999 4289024 HNE_3535 Hyphomonas neptunium ATCC 15444 acetyltransferase YP_762206.1 3667523 D 228405 CDS YP_762207.1 114797143 4288360 3667992..3669125 1 NC_008358.1 identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 3669125 4288360 HNE_3536 Hyphomonas neptunium ATCC 15444 putative esterase YP_762207.1 3667992 D 228405 CDS YP_762208.1 114798108 4289603 complement(3669244..3670155) 1 NC_008358.1 identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688; chloramphenicol-sensitivity protein (RarD) family protein 3670155 rarD 4289603 rarD Hyphomonas neptunium ATCC 15444 chloramphenicol-sensitivity protein (RarD) family protein YP_762208.1 3669244 R 228405 CDS YP_762209.1 114799847 4290155 complement(3670288..3672783) 1 NC_008358.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3672783 4290155 HNE_3538 Hyphomonas neptunium ATCC 15444 TonB-dependent receptor YP_762209.1 3670288 R 228405 CDS YP_762210.1 114798850 4287814 3673018..3674562 1 NC_008358.1 identified by match to protein family HMM PF00685; sulfotransferase domain-containing protein 3674562 4287814 HNE_3539 Hyphomonas neptunium ATCC 15444 sulfotransferase domain-containing protein YP_762210.1 3673018 D 228405 CDS YP_762211.1 114798332 4287115 3674624..3675640 1 NC_008358.1 identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 3675640 4287115 HNE_3540 Hyphomonas neptunium ATCC 15444 aldo/keto reductase family oxidoreductase YP_762211.1 3674624 D 228405 CDS YP_762212.1 114797355 4287209 complement(3676640..3679153) 1 NC_008358.1 identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein 3679153 4287209 HNE_3541 Hyphomonas neptunium ATCC 15444 FtsK/SpoIIIE family protein YP_762212.1 3676640 R 228405 CDS YP_762213.1 114799360 4288130 complement(3679369..3680730) 1 NC_008358.1 identified by match to protein family HMM PF00909; ammonium transporter family protein 3680730 4288130 HNE_3542 Hyphomonas neptunium ATCC 15444 ammonium transporter family protein YP_762213.1 3679369 R 228405 CDS YP_762214.1 114798374 4288366 3680977..3682185 1 NC_008358.1 identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3682185 ubiF 4288366 ubiF Hyphomonas neptunium ATCC 15444 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_762214.1 3680977 D 228405 CDS YP_762215.1 114797817 4288470 complement(3682182..3682487) 1 NC_008358.1 identified by similarity to GB:CAD85056.1; match to protein family HMM PF06155; hypothetical protein 3682487 4288470 HNE_3544 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762215.1 3682182 R 228405 CDS YP_762216.1 114799656 4288678 complement(3682484..3682741) 1 NC_008358.1 identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; hypothetical protein 3682741 4288678 HNE_3545 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762216.1 3682484 R 228405 CDS YP_762217.1 114798647 4290393 complement(3682761..3683405) 1 NC_008358.1 identified by match to protein family HMM PF02190; ATP-dependent La family protease 3683405 4290393 HNE_3546 Hyphomonas neptunium ATCC 15444 ATP-dependent La family protease YP_762217.1 3682761 R 228405 CDS YP_762218.1 114797202 4287073 complement(3683446..3684333) 1 NC_008358.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; putative thioredoxin 3684333 4287073 HNE_3547 Hyphomonas neptunium ATCC 15444 putative thioredoxin YP_762218.1 3683446 R 228405 CDS YP_762219.1 114798962 4287419 3684510..3685172 1 NC_008358.1 identified by match to protein family HMM PF03548; LolA family outer membrane lipoprotein carrier protein 3685172 4287419 HNE_3548 Hyphomonas neptunium ATCC 15444 LolA family outer membrane lipoprotein carrier protein YP_762219.1 3684510 D 228405 CDS YP_762220.1 114800092 4289975 3685413..3686222 1 NC_008358.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633; putative exodeoxyribonuclease III 3686222 4289975 HNE_3549 Hyphomonas neptunium ATCC 15444 putative exodeoxyribonuclease III YP_762220.1 3685413 D 228405 CDS YP_762221.1 114797342 4289420 complement(3686223..3686909) 1 NC_008358.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3686909 4289420 HNE_3550 Hyphomonas neptunium ATCC 15444 DNA-binding response regulator YP_762221.1 3686223 R 228405 CDS YP_762222.1 114797650 4289044 3687010..3687516 1 NC_008358.1 identified by similarity to GB:AAK25706.1; hypothetical protein 3687516 4289044 HNE_3551 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762222.1 3687010 D 228405 CDS YP_762223.1 114799476 4290057 complement(3687513..3688181) 1 NC_008358.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase domain-containing protein 3688181 4290057 HNE_3552 Hyphomonas neptunium ATCC 15444 alanine racemase domain-containing protein YP_762223.1 3687513 R 228405 CDS YP_762224.1 114800255 4287490 3688228..3688824 1 NC_008358.1 identified by match to protein family HMM PF02581; thiamine monophosphate synthase family protein 3688824 4287490 HNE_3553 Hyphomonas neptunium ATCC 15444 thiamine monophosphate synthase family protein YP_762224.1 3688228 D 228405 CDS YP_762225.1 114797859 4287129 complement(3688877..3689329) 1 NC_008358.1 identified by similarity to GB:AAK25709.1; hypothetical protein 3689329 4287129 HNE_3554 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762225.1 3688877 R 228405 CDS YP_762226.1 114797949 4289561 complement(3689403..3690638) 1 NC_008358.1 hypothetical protein 3690638 4289561 HNE_3555 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762226.1 3689403 R 228405 CDS YP_762227.1 114799797 4289814 3690713..3691141 1 NC_008358.1 putative lipoprotein 3691141 4289814 HNE_3556 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762227.1 3690713 D 228405 CDS YP_762228.1 114799286 4289011 3691192..3693759 1 NC_008358.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3693759 leuS 4289011 leuS Hyphomonas neptunium ATCC 15444 leucyl-tRNA synthetase YP_762228.1 3691192 D 228405 CDS YP_762229.1 114798875 4289731 3693756..3694229 1 NC_008358.1 identified by similarity to GB:AAK25712.1; putative lipoprotein 3694229 4289731 HNE_3558 Hyphomonas neptunium ATCC 15444 putative lipoprotein YP_762229.1 3693756 D 228405 CDS YP_762230.1 114798351 4288634 3694229..3695260 1 NC_008358.1 identified by match to protein family HMM TIGR01128; DNA polymerase III subunit delta 3695260 holA 4288634 holA Hyphomonas neptunium ATCC 15444 DNA polymerase III subunit delta YP_762230.1 3694229 D 228405 CDS YP_762231.1 114799854 4287436 complement(3695268..3696233) 1 NC_008358.1 identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome partitioning protein ParB 3696233 parB 4287436 parB Hyphomonas neptunium ATCC 15444 chromosome partitioning protein ParB YP_762231.1 3695268 R 228405 CDS YP_762232.1 114798917 4287861 complement(3696230..3697036) 1 NC_008358.1 identified by similarity to SP:O05189; match to protein family HMM PF01656; chromosome partitioning protein ParA 3697036 parA 4287861 parA Hyphomonas neptunium ATCC 15444 chromosome partitioning protein ParA YP_762232.1 3696230 R 228405 CDS YP_762233.1 114798745 4287980 complement(3697029..3697652) 1 NC_008358.1 identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB 3697652 gidB 4287980 gidB Hyphomonas neptunium ATCC 15444 methyltransferase GidB YP_762233.1 3697029 R 228405 CDS YP_762234.1 114797761 4288219 complement(3697656..3699521) 1 NC_008358.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3699521 gidA 4288219 gidA Hyphomonas neptunium ATCC 15444 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_762234.1 3697656 R 228405 CDS YP_762235.1 114799625 4290265 complement(3699586..3700911) 1 NC_008358.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE 3700911 trmE 4290265 trmE Hyphomonas neptunium ATCC 15444 tRNA modification GTPase TrmE YP_762235.1 3699586 R 228405 CDS YP_762236.1 114798602 4290505 complement(3700924..3702180) 1 NC_008358.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 3702180 rho 4290505 rho Hyphomonas neptunium ATCC 15444 transcription termination factor Rho YP_762236.1 3700924 R 228405 CDS YP_762237.1 114798055 4289530 complement(3702356..3702799) 1 NC_008358.1 identified by match to protein family HMM PF03653; hypothetical protein 3702799 4289530 HNE_3566 Hyphomonas neptunium ATCC 15444 hypothetical protein YP_762237.1 3702356 R 228405 CDS YP_762238.1 114798830 4287560 complement(3702813..3703886) 1 NC_008358.1 identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 3703886 hemH 4287560 hemH Hyphomonas neptunium ATCC 15444 ferrochelatase YP_762238.1 3702813 R 228405 CDS YP_762239.1 114800363 4288726 complement(3703903..3704937) 1 NC_008358.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 3704937 hemE 4288726 hemE Hyphomonas neptunium ATCC 15444 uroporphyrinogen decarboxylase YP_762239.1 3703903 R 228405 CDS