-- dump date 20140619_121058 -- class Genbank::CDS -- table cds_note -- id note YP_002235543.1 identified by Glimmer3; putative YP_002235544.1 identified by Glimmer3; putative YP_002235545.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_002235546.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_002235547.1 identified by Glimmer3; putative YP_002235548.1 identified by Glimmer3; putative YP_002235549.1 identified by Glimmer3; putative YP_002235550.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_002235551.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002235552.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002235553.1 identified by match to protein family HMM PF07690 YP_002235554.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_002235555.1 identified by match to protein family HMM PF00165 YP_002235556.1 identified by similarity to GB:AAS04364.1 YP_002235557.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002235558.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002235559.1 identified by match to protein family HMM PF00892 YP_002235560.1 identified by match to protein family HMM PF01609 YP_002235561.1 identified by match to protein family HMM PF00529 YP_002235562.1 identified by match to protein family HMM PF07869 YP_002235563.1 identified by match to protein family HMM PF04632 YP_002235564.1 identified by match to protein family HMM PF00165 YP_002235565.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_002235566.1 identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965 YP_002235567.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002235568.1 identified by Glimmer3; putative YP_002235570.1 identified by match to protein family HMM PF00239 YP_002235571.1 identified by Glimmer3; putative YP_002235572.1 identified by match to protein family HMM PF00583 YP_002235573.1 identified by similarity to GB:AAM08030.1; match to protein family HMM PF00665 YP_002235574.1 identified by Glimmer3; putative YP_002235575.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002235576.1 identified by similarity to SP:P69824; match to protein family HMM PF00359 YP_002235577.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002235578.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002235579.1 identified by similarity to SP:P50852; match to protein family HMM PF02302; match to protein family HMM PF02378 YP_002235581.1 identified by Glimmer3; putative YP_002235582.1 identified by similarity to GB:ABG56821.1; match to protein family HMM PF00665 YP_002235583.1 identified by match to protein family HMM PF01527 YP_002235584.1 identified by similarity to GB:CAG20213.1 YP_002235585.1 identified by match to protein family HMM PF00665 YP_002235586.1 identified by similarity to GB:AAZ28416.1; match to protein family HMM PF04229 YP_002235587.1 identified by Glimmer3; putative YP_002235588.1 Similar to Escherichia coli yedK; identified by similarity to SP:P76318; match to protein family HMM PF02586 YP_002235589.1 identified by Glimmer3; putative YP_002235590.1 identified by match to protein family HMM PF06171 YP_002235591.1 identified by Glimmer3; putative YP_002235592.1 identified by Glimmer3; putative YP_002235594.1 identified by Glimmer3; putative YP_002235595.1 identified by similarity to GB:CAE16354.1 YP_002235596.1 identified by similarity to GB:CAE16353.1 YP_002235597.1 identified by similarity to GB:CAG75875.1 YP_002235598.1 identified by Glimmer3; putative YP_002235599.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_002235600.1 identified by match to protein family HMM PF00165 YP_002235601.1 Similar to Escherichia coli yeaN; identified by match to protein family HMM PF07690 YP_002235602.1 identified by Glimmer3; putative YP_002235603.1 identified by Glimmer3; putative YP_002235605.1 identified by similarity to SP:P0A754; match to protein family HMM PF02525 YP_002235606.1 identified by match to protein family HMM PF00248 YP_002235607.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002235608.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002235609.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002235610.1 identified by match to protein family HMM PF04657 YP_002235611.1 identified by match to protein family HMM PF08450 YP_002235612.1 identified by match to protein family HMM PF05368 YP_002235613.1 identified by match to protein family HMM PF01638 YP_002235614.1 identified by match to protein family HMM PF07859 YP_002235615.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_002235616.1 identified by Glimmer3; putative YP_002235617.1 identified by similarity to GB:ABE58096.1 YP_002235618.1 identified by Glimmer3; putative YP_002235619.1 identified by similarity to GB:ABI56889.1 YP_002235620.1 identified by Glimmer3; putative YP_002235621.1 identified by Glimmer3; putative YP_002235622.1 identified by Glimmer3; putative YP_002235623.1 identified by Glimmer3; putative YP_002235624.1 identified by similarity to SP:P62552; match to protein family HMM PF07362 YP_002235625.1 controlled cell death protein; post-segregation toxin; toxin addiction system YP_002235626.1 identified by Glimmer3; putative YP_002235627.1 identified by Glimmer3; putative YP_002235628.1 identified by Glimmer3; putative YP_002235629.1 identified by Glimmer3; putative YP_002235630.1 RepE; RepFIB YP_002235631.1 identified by Glimmer3; putative YP_002235632.1 identified by similarity to SP:P07620 YP_002235633.1 identified by similarity to SP:P07621; match to protein family HMM PF02195; match to protein family HMM PF08775; match to protein family HMM TIGR00180 YP_002235634.1 N-terminal truncation; identified by similarity to SP:P18471; match to protein family HMM PF06834 YP_002235635.1 identified by Glimmer3; putative YP_002235636.1 identified by Glimmer3; putative YP_002235637.1 identified by Glimmer3; putative YP_002235638.1 identified by Glimmer3; putative YP_002235639.1 identified by match to protein family HMM TIGR02742 YP_002235640.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell YP_002235641.1 identified by Glimmer3; putative YP_002235642.1 identified by similarity to SP:Q05807 YP_002235643.1 identified by Glimmer3; putative YP_002235644.1 type IV secretion system pilus assembly protein; similar to F plasmid TraF YP_002235645.1 identified by similarity to SP:P22710; match to protein family HMM PF05857; match to protein family HMM TIGR02755 YP_002235646.1 identified by similarity to SP:P22707; match to protein family HMM PF05286 YP_002235648.1 identified by Glimmer3; putative YP_002235649.1 identified by similarity to GB:CAA69586.1 YP_002235651.1 identified by similarity to GB:CAD91808.1 YP_002235652.1 identified by similarity to PDB:1BYR_A YP_002235653.1 identified by similarity to SP:Q7BSX2 YP_002235654.1 identified by match to protein family HMM TIGR03475 YP_002235655.1 RepA YP_002235656.1 identified by similarity to GB:CAD09738.1 YP_002235657.1 identified by match to protein family HMM PF05321 YP_002235658.1 identified by Glimmer3; putative YP_002235659.1 identified by match to protein family HMM PF00589 YP_002235660.1 identified by similarity to GB:AAS76413.1 YP_002235661.1 identified by Glimmer3; putative YP_002235662.1 identified by similarity to GB:CAE51583.1 YP_002235663.1 identified by match to protein family HMM PF05472 YP_002235664.1 identified by Glimmer3; putative YP_002235665.1 identified by similarity to GB:CAD09725.1 YP_002235666.1 identified by Glimmer3; putative YP_002235667.1 identified by match to protein family HMM PF01527 YP_002235668.1 identified by match to protein family HMM PF00665 YP_002235669.1 identified by Glimmer3; putative YP_002235670.1 identified by Glimmer3; putative YP_002235672.1 identified by match to protein family HMM PF01610 YP_002235673.1 identified by Glimmer3; putative YP_002235674.1 SopB YP_002235675.1 involved in plamid partioning; identified by similarity to SP:P62556; match to protein family HMM PF00376; match to protein family HMM PF01656 YP_002235676.1 identified by Glimmer3; putative YP_002235677.1 identified by similarity to SP:P24042; match to protein family HMM PF01051 YP_002235679.1 identified by match to protein family HMM PF00589 YP_002235680.1 identified by Glimmer3; putative YP_002235681.1 identified by Glimmer3; putative YP_002235682.1 identified by Glimmer3; putative YP_002235683.1 identified by Glimmer3; putative YP_002235684.1 identified by similarity to GB:ABA77795.1 YP_002235685.1 identified by Glimmer3; putative YP_002235686.1 identified by Glimmer3; putative YP_002235687.1 identified by Glimmer3; putative YP_002235688.1 identified by Glimmer3; putative YP_002235689.1 identified by match to protein family HMM PF00990; match to protein family HMM PF05230; match to protein family HMM TIGR00254 YP_002235690.1 identified by similarity to GB:CAH21843.1 YP_002235691.1 identified by Glimmer3; putative YP_002235692.1 identified by similarity to GB:ABF59871.1 YP_002235693.1 identified by Glimmer3; putative YP_002235694.1 identified by match to protein family HMM TIGR02293 YP_002235695.1 identified by match to protein family HMM PF08808 YP_002235696.1 identified by Glimmer3; putative YP_002235697.1 identified by Glimmer3; putative YP_002235698.1 identified by similarity to GB:AAL72400.1 YP_002235699.1 identified by similarity to SP:P19769; match to protein family HMM PF00665 YP_002235700.1 identified by Glimmer3; putative YP_002235701.1 regulates the expression of of the arsRBC involved in resistance to arsenic YP_002235702.1 identified by similarity to GB:BAA24821.1; match to protein family HMM PF06953 YP_002235703.1 identified by similarity to SP:P08690; match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_002235704.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935 YP_002235705.1 identified by similarity to SP:P08692; match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_002235706.1 identified by similarity to SP:P31668; match to protein family HMM PF00583 YP_002235707.1 identified by similarity to SP:P08690; match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_002235708.1 identified by similarity to GB:BAA24821.1; match to protein family HMM PF06953 YP_002235709.1 identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002235710.1 identified by similarity to GB:AAF69240.1; match to protein family HMM PF03358; match to protein family HMM TIGR02690 YP_002235711.1 identified by match to protein family HMM PF01022 YP_002235712.1 identified by match to protein family HMM PF08681 YP_002235713.1 identified by match to protein family HMM PF00583 YP_002235714.1 identified by match to protein family HMM PF01848 YP_002235715.1 identified by Glimmer3; putative YP_002235716.1 identified by Glimmer3; putative YP_002235717.1 identified by Glimmer3; putative YP_002235718.1 identified by Glimmer3; putative YP_002235719.1 identified by Glimmer3; putative YP_002235720.1 identified by similarity to GB:BAB93827.1 YP_002235721.1 identified by Glimmer3; putative YP_002235722.1 identified by Glimmer3; putative YP_002235723.1 identified by Glimmer3; putative YP_002235724.1 identified by Glimmer3; putative YP_002235725.1 identified by match to protein family HMM PF03288 YP_002235727.1 identified by Glimmer3; putative YP_002235728.1 identified by Glimmer3; putative YP_002235729.1 identified by Glimmer3; putative YP_002235730.1 identified by Glimmer3; putative YP_002235731.1 identified by similarity to RF:NP_404844.1 YP_002235732.1 identified by Glimmer3; putative YP_002235733.1 identified by Glimmer3; putative YP_002235734.1 identified by Glimmer3; putative YP_002235735.1 identified by similarity to RF:NP_836846.1 YP_002235736.1 identified by Glimmer3; putative YP_002235737.1 identified by Glimmer3; putative YP_002235738.1 identified by similarity to GB:ABF12897.1 YP_002235739.1 identified by similarity to GB:CAD09854.1 YP_002235740.1 identified by similarity to GB:AAX22070.2 YP_002235741.1 identified by match to protein family HMM PF01527 YP_002235742.1 identified by match to protein family HMM PF00665 YP_002235743.1 identified by Glimmer3; putative YP_002235744.1 catalyzes the transfer of palmitate to lipid A YP_002235745.1 identified by Glimmer3; putative YP_002235747.1 identified by match to protein family HMM PF00873 YP_002235748.1 identified by match to protein family HMM TIGR01730 YP_002235749.1 identified by Glimmer3; putative YP_002235750.1 identified by match to protein family HMM PF00582 YP_002235751.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002235752.1 identified by similarity to GB:AAG06602.1 YP_002235753.1 identified by match to protein family HMM PF02470 YP_002235754.1 identified by match to protein family HMM PF00005 YP_002235755.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_002235756.1 identified by similarity to GB:AAK82938.1; match to protein family HMM PF00128 YP_002235757.1 identified by similarity to GB:AAL16643.1; match to protein family HMM PF01490; match to protein family HMM PF03222 YP_002235758.1 identified by match to protein family HMM PF00155 YP_002235759.1 identified by match to protein family HMM PF07690 YP_002235760.1 identified by Glimmer3; putative YP_002235761.1 identified by Glimmer3; putative YP_002235762.1 identified by Glimmer3; putative YP_002235763.1 identified by Glimmer3; putative YP_002235764.1 identified by similarity to GB:AAW85649.1 YP_002235765.1 identified by similarity to SP:P37589; similarity to SP:P37590 YP_002235766.1 identified by similarity to GB:CAJ49184.1 YP_002235767.1 identified by Glimmer3; putative YP_002235768.1 identified by similarity to GB:CAA46499.1; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002235769.1 identified by similarity to SP:O68438; match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927 YP_002235770.1 identified by Glimmer3; putative YP_002235771.1 identified by Glimmer3; putative YP_002235772.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002235773.1 identified by similarity to SP:P03841 YP_002235774.1 identified by similarity to SP:P26466 YP_002235775.1 identified by Glimmer3; putative YP_002235776.1 identified by Glimmer3; putative YP_002235777.1 identified by match to protein family HMM PF02302 YP_002235778.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002235779.1 identified by match to protein family HMM PF00232 YP_002235780.1 identified by match to protein family HMM PF02255 YP_002235781.1 identified by similarity to GB:ABD51759.1; match to protein family HMM PF07395 YP_002235782.1 identified by Glimmer3; putative YP_002235783.1 identified by match to protein family HMM PF03212; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_002235784.1 identified by Glimmer3; putative YP_002235785.1 identified by match to protein family HMM PF06171 YP_002235786.1 identified by similarity to GB:ABB68921.1 YP_002235787.1 identified by match to protein family HMM PF08681 YP_002235788.1 identified by similarity to GB:CAG24992.1 YP_002235789.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins YP_002235790.1 identified by Glimmer3; putative YP_002235791.1 identified by similarity to GB:AAR07815.1 YP_002235793.1 identified by Glimmer3; putative YP_002235794.1 identified by similarity to GB:ABK50440.1; match to protein family HMM PF07512 YP_002235795.1 identified by Glimmer3; putative YP_002235796.1 identified by match to protein family HMM PF02517 YP_002235797.1 Type I secretion system ABC protein; identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_002235798.1 Type I secretion system; identified by similarity to GB:AAL08401.1; match to protein family HMM PF00529 YP_002235799.1 identified by Glimmer3; putative YP_002235800.1 identified by Glimmer3; putative YP_002235802.1 possibly involved in maintenance of plasmid stability; identified by similarity to GB:CAA47369.1; match to protein family HMM PF01850 YP_002235803.1 possibly involved in maintenance of plasmid stability; identified by similarity to SP:Q05459; match to protein family HMM PF04014 YP_002235804.1 identified by Glimmer3; putative YP_002235805.1 identified by Glimmer3; putative YP_002235806.1 identified by similarity to GB:AAW73285.1 YP_002235807.1 identified by similarity to GB:AAR05719.1 YP_002235808.1 identified by similarity to GB:AAR05720.1 YP_002235809.1 identified by Glimmer3; putative YP_002235810.1 identified by similarity to GB:AAK50422.1 YP_002235811.1 identified by Glimmer3; putative YP_002235812.1 identified by Glimmer3; putative YP_002235813.1 identified by Glimmer3; putative YP_002235814.1 identified by Glimmer3; putative YP_002235815.1 identified by Glimmer3; putative YP_002235816.1 identified by Glimmer3; putative YP_002235817.1 identified by similarity to GB:BAB35022.1 YP_002235818.1 identified by Glimmer3; putative YP_002235819.1 identified by Glimmer3; putative YP_002235820.1 identified by similarity to GB:AAN79957.1 YP_002235821.1 identified by Glimmer3; putative YP_002235822.1 identified by Glimmer3; putative YP_002235823.1 identified by match to protein family HMM PF01609 YP_002235824.1 identified by similarity to SP:P22997; match to protein family HMM PF00565 YP_002235825.1 identified by match to protein family HMM PF06666 YP_002235826.1 identified by Glimmer3; putative YP_002235827.1 identified by Glimmer3; putative YP_002235828.1 identified by similarity to GB:BAB12671.1 YP_002235829.1 PsiA YP_002235830.1 identified by Glimmer3; putative YP_002235832.1 identified by Glimmer3; putative YP_002235833.1 identified by similarity to GB:BAD55535.1 YP_002235834.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002235835.1 identified by Glimmer3; putative YP_002235836.1 identified by match to protein family HMM PF02342 YP_002235837.1 identified by similarity to SP:P18782; match to protein family HMM PF02342 YP_002235838.1 identified by similarity to SP:Q52357; match to protein family HMM PF02342 YP_002235839.1 identified by similarity to SP:Q52356; match to protein family HMM PF03741 YP_002235840.1 identified by match to protein family HMM PF05099 YP_002235841.1 identified by similarity to GB:AAD47285.1; match to protein family HMM PF02342 YP_002235842.1 identified by similarity to SP:Q52353; match to protein family HMM PF02342 YP_002235843.1 identified by match to protein family HMM PF02655 YP_002235844.1 identified by Glimmer3; putative YP_002235845.1 identified by Glimmer3; putative YP_002235846.1 identified by similarity to GB:CAE51598.1 YP_002235847.1 identified by similarity to GB:BAB34768.1 YP_002235848.1 identified by similarity to GB:CAI61971.2 YP_002235849.1 identified by match to protein family HMM PF01402 YP_002235850.1 identified by Glimmer3; putative YP_002235851.1 identified by similarity to GB:AAC44737.1; match to protein family HMM PF00092 YP_002235852.1 identified by similarity to SP:P75012; match to protein family HMM PF02342 YP_002235853.1 identified by match to protein family HMM PF00092 YP_002235854.1 identified by match to protein family HMM PF00092 YP_002235855.1 identified by similarity to GB:CAH22704.1 YP_002235856.1 identified by similarity to GB:AAR07659.1 YP_002235857.1 identified by similarity to GB:CAD09896.1 YP_002235858.1 identified by Glimmer3; putative YP_002235859.1 identified by Glimmer3; putative YP_002235860.1 identified by similarity to GB:BAC53441.1 YP_002235861.1 identified by Glimmer3; putative YP_002235862.1 identified by match to protein family HMM PF00239 YP_002235863.1 identified by match to protein family HMM PF04591 YP_002235866.1 identified by Glimmer3; putative YP_002235867.1 identified by similarity to GB:ABC30324.1 YP_002235868.1 identified by Glimmer3; putative YP_002235869.1 identified by similarity to GB:AAU36866.1 YP_002235870.1 identified by match to protein family HMM PF00583 YP_002235871.1 identified by match to protein family HMM PF08681 YP_002235872.1 identified by Glimmer3; putative YP_002235873.1 identified by Glimmer3; putative YP_002235874.1 identified by Glimmer3; putative YP_002235875.1 identified by similarity to GB:ABD51701.1 YP_002235876.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA YP_002235877.1 identified by Glimmer3; putative YP_002235878.1 identified by Glimmer3; putative YP_002235879.1 identified by Glimmer3; putative YP_002235880.1 identified by Glimmer3; putative YP_002235881.1 identified by Glimmer3; putative YP_002235882.1 identified by Glimmer3; putative YP_002235883.1 identified by Glimmer3; putative YP_002235884.1 identified by Glimmer3; putative YP_002235885.1 identified by similarity to SP:P24042; match to protein family HMM PF01051 YP_002235886.1 identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362 YP_002235887.1 binds the polymerase to DNA and acts as a sliding clamp YP_002235888.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002235889.1 negatively supercoils closed circular double-stranded DNA YP_002235890.1 YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins YP_002235891.1 identified by similarity to GB:CAD03165.1 YP_002235892.1 identified by match to protein family HMM PF01103 YP_002235893.1 identified by similarity to GB:AAX67640.1 YP_002235894.1 identified by match to protein family HMM PF07119 YP_002235895.1 with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress YP_002235896.1 16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent YP_002235897.1 Similar to Escherichia coli yidE; identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625 YP_002235898.1 Similar to Escherichia coli yidP; identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002235899.1 identified by similarity to SP:Q9AGA7; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00852; match to protein family HMM TIGR02005 YP_002235900.1 identified by similarity to SP:Q9AGA6; match to protein family HMM PF02056 YP_002235901.1 Similar to Escherichia coli yidH; identified by similarity to SP:P0ADM3; match to protein family HMM PF02656 YP_002235902.1 Similar to Escherichia coli yidG; identified by similarity to SP:P0ADL9 YP_002235903.1 Similar to Escherichia coli yidF; identified by similarity to SP:P31443 YP_002235904.1 catalyzes the formation of pyruvate from serine YP_002235905.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function YP_002235906.1 regulates the synthesis and expression of the dsdXA operon and dadA gene YP_002235907.1 multidrug efflux protein involved in adaptation to low energy shock YP_002235908.1 identified by match to protein family HMM PF00892 YP_002235909.1 identified by match to protein family HMM PF00583 YP_002235911.1 identified by similarity to SP:P08142; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_002235912.1 with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit YP_002235913.1 response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter YP_002235914.1 Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph YP_002235915.1 membrane protein regulates uhpT expression YP_002235916.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate YP_002235917.1 identified by match to protein family HMM PF06711 YP_002235918.1 identified by match to protein family HMM PF01381 YP_002235919.1 identified by similarity to GB:CAE16839.1; match to protein family HMM PF06296 YP_002235920.1 experimental results in Escherichia coli suggest that this gene encodes an inosine export protein; member of major facilitator superfamily; MFS YP_002235921.1 identified by similarity to SP:P02943 YP_002235922.1 identified by match to protein family HMM PF02255 YP_002235923.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002235924.1 identified by match to protein family HMM PF02302 YP_002235925.1 identified by match to protein family HMM PF00356 YP_002235926.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002235927.1 extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway YP_002235928.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002235929.1 identified by match to protein family HMM PF02585 YP_002235930.1 identified by similarity to GB:BAB88738.1; match to protein family HMM PF03737; match to protein family HMM TIGR02798 YP_002235931.1 identified by similarity to GB:CAB87567.1; match to protein family HMM PF04303 YP_002235932.1 identified by match to protein family HMM PF03446; match to protein family HMM PF09130 YP_002235933.1 identified by similarity to SP:Q5PC60 YP_002235934.1 Similar to Escherichia coli yicL; identified by similarity to SP:P31437; match to protein family HMM PF00892; match to protein family HMM TIGR00950 YP_002235935.1 belongs to PEP-dependent PTS system; contains the PTS EIIBC domains; involved in uptake of exogenous N-acetylmuramic acid (MurNAc); requires crr-encoded enzyme IIA-glucose component YP_002235936.1 identified by similarity to SP:P76535; match to protein family HMM TIGR00274 YP_002235937.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002235938.1 identified by similarity to GB:CAD48863.1; match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002235939.1 identified by similarity to GB:CAD48862.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002235940.1 identified by similarity to GB:CAD48861.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002235941.1 identified by Glimmer3 YP_002235942.1 identified by Glimmer3 YP_002235943.1 identified by match to protein family HMM PF00583 YP_002235944.1 identified by match to protein family HMM PF00440 YP_002235945.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002235946.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002235947.1 identified by match to protein family HMM PF01243 YP_002235948.1 identified by similarity to GB:AAZ36073.1; match to protein family HMM PF07080 YP_002235949.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; match to protein family HMM TIGR01926 YP_002235950.1 identified by match to protein family HMM PF00165 YP_002235951.1 identified by similarity to SP:P04846; match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_002235952.1 identified by match to protein family HMM PF00892 YP_002235953.1 identified by similarity to SP:P54570; match to protein family HMM PF00293 YP_002235954.1 identified by similarity to GB:BAB33823.1 YP_002235955.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_002235956.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002235957.1 identified by similarity to GB:CAD01174.1 YP_002235958.1 identified by match to protein family HMM PF03992 YP_002235959.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02817 YP_002235960.1 identified by similarity to SP:O07005 YP_002235961.1 may be involved in the transport of galactosides-pentoses-hexuronides YP_002235962.1 catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides YP_002235963.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002235964.1 identified by match to protein family HMM PF02056 YP_002235965.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002235966.1 Similar to Escherichia coli yicH; identified by match to protein family HMM PF05170 YP_002235967.1 Similar to Escherichia coli yicE; identified by similarity to SP:P0AGM9; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002235968.1 identified by similarity to SP:P0AER8; match to protein family HMM PF03616; match to protein family HMM TIGR00210 YP_002235969.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311 YP_002235970.1 identified by similarity to SP:P0AER0; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002235971.1 Similar to Escherichia coli yiiU; identified by similarity to SP:P0AF39; match to protein family HMM PF06005 YP_002235972.1 identified by similarity to SP:P02906; match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_002235973.1 identified by match to protein family HMM PF02611; match to protein family HMM TIGR00672 YP_002235974.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600 YP_002235975.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002235976.1 Similar to Escherichia coli yiiQ; identified by similarity to SP:P32160; match to protein family HMM PF07305 YP_002235977.1 identified by match to protein family HMM PF05656 YP_002235978.1 identified by similarity to SP:P28861; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002235979.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002235980.1 catalyzes branch migration in Holliday junction intermediates YP_002235981.1 specifically modifies tRNA at position G18 YP_002235982.1 identified by similarity to SP:P0AG26; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002235983.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002235984.1 Essential for recycling GMP and indirectly, cGMP YP_002235985.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+ YP_002235986.1 identified by match to protein family HMM PF03458 YP_002235987.1 identified by match to protein family HMM PF00654 YP_002235988.1 Similar to Escherichia coli yicC; identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002235989.1 identified by Glimmer3 YP_002235990.1 identified by similarity to GB:CAG77016.1 YP_002235992.1 identified by match to protein family HMM PF00005 YP_002235993.1 identified by match to protein family HMM PF01061 YP_002235994.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002235995.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002235996.1 identified by match to protein family HMM PF08450; match to protein family HMM TIGR01409 YP_002235997.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_002235998.1 catalyzes the formation of dUMP from dUTP YP_002235999.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002236000.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002236001.1 required for 70S ribosome assembly YP_002236002.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002236003.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002236004.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002236005.1 identified by match to protein family HMM PF00535 YP_002236006.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_002236007.1 identified by match to protein family HMM PF00535 YP_002236008.1 identified by match to protein family HMM PF00534 YP_002236009.1 identified by similarity to SP:P25740; match to protein family HMM PF00534 YP_002236010.1 identified by similarity to SP:P25742; match to protein family HMM PF01075; match to protein family HMM TIGR02201 YP_002236012.1 identified by similarity to SP:P27242; match to protein family HMM PF01075 YP_002236013.1 identified by similarity to GB:AAL91973.1; match to protein family HMM PF04932 YP_002236015.1 also known as waaC; identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_002236016.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core YP_002236017.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose YP_002236018.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002236019.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_002236020.1 identified by match to protein family HMM PF00535 YP_002236021.1 identified by match to protein family HMM PF04748 YP_002236022.1 identified by match to protein family HMM PF01551 YP_002236023.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002236024.1 identified by match to protein family HMM PF00581 YP_002236025.1 identified by similarity to SP:P0AC62; match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_002236026.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_002236027.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002236028.1 catalyzes the O-acetylation of serine YP_002236029.1 member of the SPOUT superfamily of RNA methyltransferases; no methyltransferase activity observed with certain tRNA substrates YP_002236030.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration YP_002236031.1 represses the lctPRD operon YP_002236032.1 identified by similarity to SP:P33231; match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_002236033.1 identified by similarity to RF:NP_458237.1 YP_002236034.1 identified by similarity to RF:NP_462588.1 YP_002236035.1 Acts as a repressor of the mtlAD operon YP_002236036.1 identified by similarity to SP:P09424; match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002236037.1 identified by similarity to SP:P00550; match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851 YP_002236038.1 identified by similarity to GB:AAN82851.1 YP_002236039.1 Similar to Escherichia coli yibH; identified by match to protein family HMM PF00529 YP_002236040.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002236041.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_002236042.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475 YP_002236043.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_002236044.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_002236045.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate YP_002236046.1 identified by similarity to SP:P37677; match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002236047.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002236048.1 identified by similarity to GB:CAD07958.1 YP_002236049.1 Similar to Escherichia coli yiaL; identified by similarity to SP:P37673; match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002236050.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate YP_002236051.1 Similar to Escherichia coli yiaJ; identified by similarity to SP:P37671; match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002236052.1 identified by match to protein family HMM PF00037 YP_002236053.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis YP_002236054.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds YP_002236055.1 identified by similarity to SP:P27297 YP_002236056.1 identified by similarity to SP:P0ACI3; match to protein family HMM PF00165 YP_002236057.1 identified by match to protein family HMM PF02653 YP_002236058.1 with XylFH is part of the high affinity xylose ABC transporter YP_002236059.1 substrate-binding component of the ATP-dependent xylose transport system; high affinity YP_002236060.1 catalyzes the interconversion of D-xylose to D-xylulose YP_002236061.1 identified by similarity to SP:P29444; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_002236062.1 identified by match to protein family HMM PF05360 YP_002236063.1 identified by match to protein family HMM PF05360 YP_002236064.1 identified by match to protein family HMM PF01757 YP_002236065.1 identified by similarity to SP:Q1R535 YP_002236066.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002236067.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002236068.1 identified by similarity to SP:P37305; match to protein family HMM PF01848 YP_002236069.1 identified by match to protein family HMM PF00005 YP_002236070.1 identified by similarity to SP:P0A9Y4; match to protein family HMM PF00313 YP_002236071.1 Similar to Escherichia coli yiaG; identified by similarity to SP:P0A9V5 YP_002236072.1 identified by similarity to SP:Q51955; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00895 YP_002236074.1 identified by similarity to SP:P37666; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002236075.1 identified by match to protein family HMM PF07690 YP_002236076.1 identified by match to protein family HMM PF00294 YP_002236077.1 identified by similarity to PDB:1YX1_A; match to protein family HMM PF01261 YP_002236078.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236079.1 identified by Glimmer3 YP_002236080.1 identified by similarity to SP:P37665; match to protein family HMM PF00691; match to protein family HMM PF05433 YP_002236081.1 identified by similarity to SP:P20099; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR00509 YP_002236082.1 identified by match to protein family HMM PF00583 YP_002236083.1 constitutive, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine YP_002236084.1 Similar to Escherichia coli yhjY; identified by similarity to SP:P37663 YP_002236085.1 Similar to Escherichia coli yhjX; identified by match to protein family HMM PF07690; match to protein family HMM TIGR00890 YP_002236086.1 catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide YP_002236087.1 identified by match to protein family HMM PF00023 YP_002236088.1 identified by similarity to SP:P23847; match to protein family HMM PF00496 YP_002236089.1 transports peptides consisting of two or three amino acids YP_002236090.1 identified by similarity to SP:P0AEG1; match to protein family HMM PF00528 YP_002236091.1 DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF YP_002236092.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_002236093.1 identified by Glimmer3 YP_002236094.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR03371 YP_002236095.1 identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030 YP_002236096.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_002236097.1 identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_002236098.1 identified by similarity to GB:BAA31466.1 YP_002236099.1 identified by similarity to SP:P37651; match to protein family HMM PF01270 YP_002236100.1 identified by match to protein family HMM TIGR03368 YP_002236101.1 identified by similarity to SP:P0ADJ5 YP_002236102.1 identified by match to protein family HMM TIGR03369 YP_002236103.1 identified by similarity to RF:NP_458299.1 YP_002236104.1 identified by match to protein family HMM PF06564; match to protein family HMM TIGR03371 YP_002236105.1 polymerizes uridine 5'-diphosphate glucose to cellulose; acts with BcsB, BcsZ and BcsC in cellulose biosynthesis YP_002236106.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_002236107.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans YP_002236108.1 cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA YP_002236109.1 identified by Glimmer3 YP_002236110.1 HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; similar to a phosphodiesterase protein from E. coli YP_002236111.1 involved in the transport of C4-dicarboxylates across the membrane YP_002236112.1 Similar to yhjJ; identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002236113.1 identified by similarity to SP:P45416; match to protein family HMM PF00294 YP_002236114.1 identified by match to protein family HMM PF05170 YP_002236115.1 Similarity to Escherichia coli yhjE; identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002236116.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00766 YP_002236117.1 Similar to Escherichia coli yhjC; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236118.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002236119.1 identified by match to protein family HMM PF00583 YP_002236120.1 cytoplasmic; catalyzes the hydrolysis of trehalose to glucose YP_002236121.1 identified by match to protein family HMM PF00465 YP_002236122.1 identified by match to protein family HMM PF02798 YP_002236123.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_002236124.1 identified by similarity to SP:P37634; match to protein family HMM PF04378 YP_002236125.1 identified by match to protein family HMM PF01569 YP_002236126.1 identified by similarity to SP:P27298; match to protein family HMM PF01432 YP_002236127.1 predicted SAM-dependent methyltransferase YP_002236128.1 member of the POT family of peptide transporters; probable proton-dependent peptide transporter function YP_002236129.1 identified by similarity to SP:P0AED0; match to protein family HMM PF00582 YP_002236130.1 ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress YP_002236131.1 identified by similarity to SP:P0AFJ7; match to protein family HMM PF01384 YP_002236132.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_002236133.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728 YP_002236134.1 identified by similarity to SP:P39761; match to protein family HMM PF01979 YP_002236135.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785 YP_002236136.1 identified by similarity to GB:BAD66291.1; match to protein family HMM PF03737 YP_002236137.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002236138.1 identified by match to protein family HMM PF00126 YP_002236139.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769 YP_002236140.1 Inhibits transcription at high concentrations of nickel YP_002236141.1 with NikABCD is involved with nickel transport into the cell YP_002236142.1 with NikABCE is involved in nickel transport into the cell YP_002236143.1 with NikABDE is involved in nickel transport into the cell YP_002236144.1 with NikACDE is involved in nickel transport into the cell YP_002236145.1 identified by similarity to SP:P33590; match to protein family HMM PF00496; match to protein family HMM TIGR02294 YP_002236146.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236147.1 identified by similarity to SP:O07006; match to protein family HMM PF05870 YP_002236148.1 catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose YP_002236149.1 catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate YP_002236150.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains YP_002236151.1 identified by match to protein family HMM PF01522 YP_002236152.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A YP_002236153.1 Similar to Escherichia coli yfbW; identified by match to protein family HMM PF00893 YP_002236154.1 Similar to Escherichia coli yfbJ; identified by similarity to SP:P76474 YP_002236155.1 identified by match to protein family HMM PF01594 YP_002236156.1 Similarity to Escherichia coli yhhS; identified by match to protein family HMM PF07690 YP_002236157.1 identified by similarity to GB:ABJ02948.1 YP_002236158.1 Similar to Escherichia coli yhhQ; identified by similarity to SP:P37619; match to protein family HMM PF02592; match to protein family HMM TIGR00697 YP_002236159.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs YP_002236160.1 P-type ATPase involved in the export of lead, cadmium, zinc and mercury YP_002236161.1 Similar to Escherichia coli yhhN; identified by similarity to SP:P0ADJ2; match to protein family HMM PF07947 YP_002236162.1 Similar to Escherichia coli yhhM; identified by similarity to SP:P37615 YP_002236163.1 identified by match to protein family HMM PF06611 YP_002236164.1 catalyzes the methylation of 16S rRNA at position G966 YP_002236165.1 signal recognition protein receptor; functions in the targeting and insertion of membrane proteins YP_002236166.1 ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions YP_002236167.1 ABC transporter membrane protein YP_002236168.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_002236169.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002236170.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002236171.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222 YP_002236172.1 identified by similarity to SP:P0AD96; match to protein family HMM PF01094 YP_002236174.1 identified by match to protein family HMM PF04011 YP_002236175.1 identified by match to protein family HMM PF00583 YP_002236176.1 identified by Glimmer3 YP_002236177.1 identified by similarity to SP:P04816; match to protein family HMM PF01094 YP_002236178.1 LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter YP_002236179.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_002236180.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_002236181.1 with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_002236182.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_002236183.1 with UgpEC is involved in the uptake of glycerol-3-phosphate YP_002236184.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_002236185.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_002236186.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_002236187.1 identified by Glimmer3 YP_002236188.1 periplasmic enzyme; post-translationally processed into two subunits which are required for wild-type enzyme activity; cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides YP_002236189.1 YhhY; regulated by the fur regulator; unknown function YP_002236190.1 identified by similarity to GB:CAA03912.1; match to protein family HMM PF04519 YP_002236191.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002236192.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_002236193.1 identified by similarity to SP:P0ACP5; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236194.1 thermoresistant; catalyzes the formation of 6-phospho-D-gluconate from gluconate YP_002236195.1 identified by similarity to SP:P0AC96; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002236196.1 identified by Glimmer3 YP_002236197.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002236198.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002236199.1 catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen YP_002236200.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002236201.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002236202.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002236203.1 identified by similarity to GB:CAH19145.1 YP_002236204.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_002236205.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine YP_002236206.1 protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity YP_002236207.1 represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism YP_002236208.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides YP_002236209.1 identified by Glimmer3 YP_002236210.1 identified by similarity to SP:P00490; match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002236211.1 amylomaltase; acts to release glucose from maltodextrins YP_002236212.1 identified by similarity to SP:P39835; match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002236213.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_002236214.1 identified by similarity to SP:Q8FCT3 YP_002236215.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01738 YP_002236216.1 identified by match to protein family HMM PF07338 YP_002236217.1 identified by match to protein family HMM PF09012 YP_002236218.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake YP_002236219.1 identified by similarity to SP:P0AEL3; match to protein family HMM PF04023 YP_002236220.1 identified by Glimmer3 YP_002236221.1 Similar to Escherichia coli yghF; identified by match to protein family HMM PF00575 YP_002236222.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002236223.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_002236224.1 membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR YP_002236225.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002236226.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002236227.1 identified by similarity to SP:P0ACG8; match to protein family HMM PF01479 YP_002236228.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002236229.1 identified by similarity to SP:P45800; match to protein family HMM PF07095 YP_002236230.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_002236231.1 bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits YP_002236232.1 identified by similarity to SP:P45753 YP_002236233.1 identified by match to protein family HMM PF05137 YP_002236234.1 identified by similarity to GB:CAD08124.1 YP_002236235.1 identified by similarity to GB:ABE09319.1 YP_002236236.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa YP_002236237.1 type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002236238.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002236239.1 identified by similarity to SP:P11557; match to protein family HMM PF05036 YP_002236240.1 identified by match to protein family HMM PF02086; match to protein family HMM TIGR00571 YP_002236241.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002236242.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_002236243.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002236244.1 multifunction enzyme consisting of uroporphyrin-III C-methyltransferase precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin YP_002236245.1 involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations YP_002236246.1 identified by similarity to SP:P08201; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_002236247.1 Catalyzes the deamination of cytosine to uracil and ammonia YP_002236248.1 identified by similarity to SP:P60778; match to protein family HMM PF07690 YP_002236249.1 identified by Glimmer3 YP_002236250.1 identified by similarity to SP:P20752; match to protein family HMM PF00160 YP_002236251.1 identified by similarity to GB:AAN82575.1 YP_002236252.1 identified by similarity to SP:P20605; match to protein family HMM PF02661 YP_002236253.1 aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity YP_002236254.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_002236255.1 Similar to Escherichia coli yhfK; identified by match to protein family HMM PF05976; match to protein family HMM TIGR01667 YP_002236256.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_002236257.1 Similar to Escherichia coli yhfA; identified by match to protein family HMM PF02566 YP_002236258.1 identified by match to protein family HMM PF00485 YP_002236259.1 Similar to Escherichia coli yheU; identified by similarity to SP:P67627; match to protein family HMM PF06794 YP_002236260.1 identified by match to protein family HMM PF00561 YP_002236261.1 Similar to Escherichia coli yheS; identified by match to protein family HMM PF00005 YP_002236262.1 required for KefB activity YP_002236263.1 involved in potassium efflux YP_002236264.1 identified by match to protein family HMM TIGR02443 YP_002236265.1 rotamase YP_002236266.1 identified by match to protein family HMM PF04102 YP_002236267.1 rotamase YP_002236268.1 Similar to Escherichia coli yheO; identified by similarity to SP:P64626; match to protein family HMM PF08348 YP_002236269.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_002236270.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_002236271.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_002236272.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002236273.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002236274.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002236275.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002236276.1 identified by similarity to SP:P0AE56; match to protein family HMM PF04324 YP_002236277.1 iron storage protein YP_002236278.1 identified by match to protein family HMM PF01478 YP_002236279.1 identified by Glimmer3 YP_002236280.1 identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049 YP_002236281.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002236282.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002236283.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002236284.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002236285.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002236286.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002236287.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002236288.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002236289.1 one of the stabilizing components for the large ribosomal subunit YP_002236290.1 identified by similarity to GB:AAN82512.1 YP_002236291.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002236292.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002236293.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002236294.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002236295.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002236296.1 binds 5S rRNA along with protein L5 and L25 YP_002236297.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002236298.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002236299.1 late assembly protein YP_002236300.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002236301.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002236302.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002236303.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002236304.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002236305.1 identified by similarity to SP:P36677 YP_002236306.1 mediates expression of the zinc export protein ZntA in response to high levels of zinc; member of MerR family of transcriptional regulators YP_002236307.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002236308.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002236309.1 catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase YP_002236310.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002236311.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002236312.1 identified by similarity to SP:P43862; match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002236313.1 identified by similarity to SP:P0A829; match to protein family HMM PF04361 YP_002236314.1 identified by match to protein family HMM PF01396 YP_002236315.1 RimN; YrdC; required for maturation of 16s RNA; binds preferentially double stranded RNA YP_002236316.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002236317.1 identified by match to protein family HMM PF07369 YP_002236318.1 identified by similarity to SP:P0A9X0 YP_002236319.1 identified by Glimmer3 YP_002236320.1 Similar to Escherichia coli yhdV YP_002236321.1 identified by similarity to SP:P24181; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002236322.1 identified by similarity to SP:P24180; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002236323.1 identified by similarity to SP:P0ACT2; match to protein family HMM PF00440; match to protein family HMM PF08361 YP_002236324.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_002236325.1 identified by similarity to SP:P0ABT5; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002236326.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002236327.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_002236328.1 identified by match to protein family HMM PF06196 YP_002236329.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002236330.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_002236331.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002236332.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_002236333.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_002236334.1 identified by Glimmer3 YP_002236335.1 regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules YP_002236336.1 functions in MreBCD complex in some organisms YP_002236337.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002236338.1 part of cell wall structural complex MreBCD; transmembrane component YP_002236339.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002236340.1 involved in the processing of the 5'end of 16S rRNA YP_002236341.1 Similar to Escherichia coli yhdP; identified by similarity to SP:P46474; match to protein family HMM TIGR02099 YP_002236342.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA YP_002236343.1 identified by similarity to SP:P67662; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236344.1 membrane protein AaeX; the gene is a member of the aaeXAB operon YP_002236345.1 with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate YP_002236346.1 with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate YP_002236347.1 Similar to Escherichia coli yhcO; identified by similarity to SP:P64616 YP_002236348.1 identified by Glimmer3 YP_002236349.1 identified by match to protein family HMM PF02129; match to protein family HMM PF07859 YP_002236350.1 identified by similarity to SP:P0AB40; match to protein family HMM PF07338 YP_002236351.1 identified by similarity to SP:P0AB40; match to protein family HMM PF07338 YP_002236352.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002236353.1 identified by Glimmer3 YP_002236354.1 oxidizes malate to oxaloacetate YP_002236355.1 identified by match to protein family HMM PF00392 YP_002236356.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002236357.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785 YP_002236358.1 Involved in the tartrate degradation pathway YP_002236359.1 Involved in the tartrate degradation pathway YP_002236360.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide YP_002236361.1 catalyzes the formation of pyruvate from oxaloacetate YP_002236362.1 identified by similarity to SP:P13156; match to protein family HMM PF03977; match to protein family HMM TIGR01109 YP_002236363.1 identified by similarity to GB:AAX64673.1 YP_002236364.1 identified by similarity to SP:P0AEE3; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02038 YP_002236365.1 identified by similarity to SP:P39099; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_002236366.1 identified by match to protein family HMM PF06295 YP_002236367.1 identified by match to protein family HMM PF03969 YP_002236368.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002236369.1 forms a direct contact with the tRNA during translation YP_002236370.1 transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation YP_002236371.1 identified by similarity to SP:P0AFZ3; match to protein family HMM PF04386 YP_002236372.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_002236373.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002236374.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_002236375.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002236376.1 identified by match to protein family HMM PF07690 YP_002236377.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002236378.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_002236379.1 sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA YP_002236380.1 identified by similarity to SP:P0ABU6; match to protein family HMM PF01965 YP_002236381.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_002236382.1 identified by similarity to SP:P0A9N0; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002236383.1 Similar to Escherichia coli yhbJ; identified by match to protein family HMM PF03668 YP_002236384.1 identified by similarity to SP:P69829; match to protein family HMM PF00359; match to protein family HMM TIGR01419 YP_002236385.1 YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing YP_002236386.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002236387.1 identified by similarity to SP:P0A9V1; match to protein family HMM PF00005 YP_002236388.1 LptA; periplasmic binding protein part of a ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system YP_002236389.1 Similar to Escherichia coli yrbK; identified by similarity to SP:P0ADW2; match to protein family HMM PF06835 YP_002236390.1 forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis YP_002236391.1 identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_002236392.1 YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers YP_002236393.1 ATP-binding subunit of a ABC toluene efflux transporter YP_002236394.1 Similar to Escherichia coli yrbE; identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_002236395.1 Similar to Escherichia coli yrbD; identified by match to protein family HMM PF02470 YP_002236396.1 identified by match to protein family HMM PF05494 YP_002236397.1 identified by similarity to RF:NP_457688.1 YP_002236398.1 identified by match to protein family HMM PF01722 YP_002236399.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002236400.1 activator of maltose metabolism genes YP_002236401.1 identified by similarity to SP:P0AD57; match to protein family HMM PF00348 YP_002236402.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002236403.1 involved in the peptidyltransferase reaction during translation YP_002236404.1 Similar to Escherichia coli yhbE; identified by similarity to SP:P0AA75; match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002236405.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002236406.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains YP_002236407.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002236408.1 identified by similarity to SP:P0AGK7; match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002236409.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit YP_002236410.1 inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins YP_002236411.1 catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate YP_002236412.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002236413.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002236414.1 identified by similarity to GB:AAN17348.1 YP_002236415.1 identified by match to protein family HMM PF07437 YP_002236416.1 identified by Glimmer3 YP_002236417.1 identified by Glimmer3 YP_002236418.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_002236419.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002236420.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002236421.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002236422.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002236423.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002236424.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002236425.1 identified by Glimmer3 YP_002236426.1 identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_002236427.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_002236428.1 participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division YP_002236429.1 tryptophan transporter of high affinity YP_002236430.1 identified by match to protein family HMM PF00296 YP_002236431.1 identified by match to protein family HMM PF01136 YP_002236432.1 identified by match to protein family HMM PF01136 YP_002236433.1 identified by match to protein family HMM PF02036 YP_002236434.1 identified by match to protein family HMM PF00583 YP_002236435.1 Similar to Escherichia coli yhbQ; identified by match to protein family HMM PF01541 YP_002236436.1 Similar to Escherichia coli yhbP; identified by similarity to SP:Q8XA94 YP_002236437.1 Similar to Escherichia coli yhbO; identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_002236438.1 identified by match to protein family HMM PF07993 YP_002236439.1 Similar to Escherichia coli yraQ; identified by match to protein family HMM PF03773 YP_002236440.1 Similar to Escherichia coli yraP; identified by match to protein family HMM PF04972 YP_002236441.1 Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein YP_002236442.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_002236443.1 identified by match to protein family HMM PF04348 YP_002236444.1 Similar to Escherichia coli yraL; identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002236445.1 identified by similarity to SP:P39829; match to protein family HMM PF04295; match to protein family HMM PF08666; match to protein family HMM TIGR03248 YP_002236446.1 identified by Glimmer3 YP_002236447.1 cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate YP_002236448.1 catalyzes the reduction of tartronate semialdehyde to glycerate YP_002236449.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002236451.1 identified by match to protein family HMM PF07813 YP_002236452.1 identified by similarity to RF:NP_457626.1 YP_002236453.1 identified by match to protein family HMM PF02678 YP_002236454.1 Similar to Escherichia coli yhaJ; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236455.1 identified by match to protein family HMM PF05656 YP_002236456.1 identified by similarity to GB:ABJ02608.1 YP_002236457.1 identified by match to protein family HMM PF07681 YP_002236458.1 identified by similarity to RF:NP_457620.1 YP_002236459.1 identified by similarity to GB:ABE08983.1 YP_002236460.1 Similar to Escherichia coli yqjD; identified by similarity to SP:P64584; match to protein family HMM PF05957 YP_002236461.1 Similar to Escherichia coli yqjC; identified by similarity to SP:P42616; match to protein family HMM PF06476 YP_002236462.1 identified by similarity to GB:AAN82299.1 YP_002236463.1 Similar to Escherichia coli yqjA; identified by match to protein family HMM PF09335 YP_002236464.1 regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization. YP_002236465.1 identified by similarity to SP:P0AA78; match to protein family HMM PF07690; match to protein family HMM TIGR00893 YP_002236466.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_002236467.1 identified by similarity to SP:P42604; match to protein family HMM PF04295; match to protein family HMM PF08666 YP_002236468.1 Similar to Escherichia coli ygjV; identified by similarity to SP:P42603 YP_002236469.1 involved in the import of serine and threonine coupled with the import of sodium YP_002236470.1 identified by similarity to SP:P42601; match to protein family HMM PF03741 YP_002236471.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002236472.1 identified by similarity to SP:P42597; match to protein family HMM PF01863 YP_002236473.1 identified by similarity to GB:AAQ62864.1; match to protein family HMM PF04616 YP_002236474.1 identified by match to protein family HMM PF00165 YP_002236475.1 uncharacterized member of the GPH family of galactose-pentose-hexuronide transporters YP_002236476.1 identified by match to protein family HMM PF05175 YP_002236477.1 identified by similarity to SP:P42593; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_002236478.1 identified by similarity to SP:P77432; match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002236479.1 identified by similarity to SP:P76141; match to protein family HMM PF04198 YP_002236480.1 identified by similarity to SP:P77257; match to protein family HMM PF00005 YP_002236481.1 identified by similarity to SP:P77672; match to protein family HMM PF02653 YP_002236482.1 identified by similarity to SP:P0AFS1; match to protein family HMM PF02653 YP_002236483.1 identified by similarity to SP:P76142 YP_002236484.1 identified by similarity to SP:P76143; match to protein family HMM PF01791 YP_002236485.1 identified by similarity to SP:P64461; match to protein family HMM PF03992 YP_002236486.1 catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate YP_002236487.1 Similar to Escherichia coli yqjI; identified by match to protein family HMM PF03551 YP_002236488.1 Similar to Escherichia coli yqjH; identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_002236489.1 identified by Glimmer3 YP_002236490.1 identified by match to protein family HMM PF02733; match to protein family HMM PF02734; match to protein family HMM TIGR02361 YP_002236491.1 phosphotransferaese subunit; phosphorylates dihydroxyacetone along with DhaK/DhaL YP_002236492.1 with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone YP_002236493.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_002236494.1 identified by Glimmer3 YP_002236495.1 identified by similarity to SP:P45511; match to protein family HMM PF00465; match to protein family HMM PF01761 YP_002236496.1 Positively regulates the dhaKLM operon from a sigma-70 promoter YP_002236497.1 identified by similarity to GB:AAD39014.1; match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_002236498.1 identified by similarity to GB:AAB48847.1 YP_002236499.1 identified by similarity to SP:P45513; match to protein family HMM PF00465 YP_002236500.1 identified by match to protein family HMM PF03928 YP_002236501.1 identified by similarity to SP:P45514; match to protein family HMM PF02286 YP_002236502.1 identified by similarity to GB:AAB48851.1; match to protein family HMM PF02288 YP_002236503.1 identified by similarity to GB:AAB48852.1; match to protein family HMM PF02287 YP_002236504.1 identified by similarity to GB:AAB48853.1; match to protein family HMM PF08841 YP_002236505.1 identified by similarity to SP:P31140; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002236506.1 identified by similarity to RF:NP_455930.1 YP_002236507.1 identified by similarity to SP:P0AET7 YP_002236508.1 Similar to Escherichia coli yfdX; identified by similarity to SP:P76520 YP_002236509.1 120 AA gap in alignment to Escherichia coli evgS, but hmm evidence suggests orf may still be functional; identified by similarity to SP:P30855; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_002236510.1 response regulator in two-component regulatory system with EvgS; phosphorylated EvgA activates ompC, emrKY, gadABC, hdeAB and others genes; involved in acid resistance, osmotic adaption, and drug resistance YP_002236511.1 identified by similarity to SP:P0AET2 YP_002236513.1 identified by match to protein family HMM PF00753 YP_002236514.1 identified by Glimmer3 YP_002236515.1 identified by Glimmer3 YP_002236516.1 identified by similarity to GB:CAH38280.1 YP_002236517.1 identified by similarity to SP:P0A9H1; match to protein family HMM PF03167 YP_002236518.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_002236519.1 synthesizes RNA primers at the replication forks YP_002236520.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002236521.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002236522.1 identified by match to protein family HMM PF02133 YP_002236523.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_002236524.1 identified by match to protein family HMM PF01730 YP_002236525.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_002236526.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_002236527.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_002236528.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_002236529.1 identified by match to protein family HMM PF01774 YP_002236530.1 identified by Glimmer3 YP_002236531.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002236532.1 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin YP_002236533.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002236534.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_002236535.1 identified by match to protein family HMM PF08239 YP_002236536.1 identified by Glimmer3 YP_002236537.1 identified by match to protein family HMM PF01928; match to protein family HMM PF05235 YP_002236538.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_002236539.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_002236540.1 Involved in glycogen synthesis. May be involved in glycogen priming YP_002236541.1 Similar to Escherichia coli yqiC; identified by similarity to SP:Q46868; match to protein family HMM PF04380 YP_002236542.1 DHBP synthase; functions during riboflavin biosynthesis YP_002236543.1 identified by similarity to SP:P0A8H3; match to protein family HMM PF02535 YP_002236544.1 seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine YP_002236545.1 identified by match to protein family HMM PF03738 YP_002236546.1 identified by similarity to GB:ABG71111.1 YP_002236547.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell YP_002236548.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_002236549.1 identified by similarity to SP:P0ADV0; match to protein family HMM PF06853 YP_002236550.1 identified by similarity to SP:P0AEW4; match to protein family HMM PF00149; match to protein family HMM PF08413 YP_002236551.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate YP_002236552.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002236553.1 Similar to Escherichia coli ygiN; identified by similarity to SP:P0ADU2; match to protein family HMM PF03992 YP_002236554.1 identified by similarity to SP:P0AEY5; match to protein family HMM PF02525 YP_002236555.1 identified by similarity to SP:P40719; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002236556.1 response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes YP_002236557.1 Similar to Escherichia coli ygiW; identified by similarity to SP:P0ADU5; match to protein family HMM PF04076; match to protein family HMM TIGR00156 YP_002236558.1 Similar to Escherichia coli ygiV; identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002236559.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002236560.1 identified by similarity to SP:P26647; match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002236561.1 identified by similarity to SP:P26648; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409 YP_002236562.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_002236563.1 methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate YP_002236564.1 identified by similarity to SP:Q46856; match to protein family HMM PF00465 YP_002236565.1 Similar to Escherichia coli yqhC; identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_002236566.1 identified by similarity to SP:P0AA60; match to protein family HMM PF09335 YP_002236567.1 catalyzes the formation of L-homocysteine from cystathionine YP_002236568.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell YP_002236569.1 membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell YP_002236570.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_002236571.1 identified by match to protein family HMM PF01738 YP_002236572.1 identified by similarity to SP:P64577 YP_002236573.1 YghU; B2989; one of eight glutathione transferase proteins from E. coli YP_002236574.1 identified by similarity to GB:AAO58210.1 YP_002236575.1 identified by Glimmer3 YP_002236576.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction YP_002236577.1 identified by match to protein family HMM PF00155 YP_002236578.1 identified by Glimmer3 YP_002236579.1 identified by similarity to GB:CAG69863.1 YP_002236580.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002236581.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236582.1 identified by similarity to GB:AAF14695.1; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_002236583.1 identified by match to protein family HMM PF00291; match to protein family HMM PF00571 YP_002236584.1 Similar to Escherichia coli yqgA; identified by match to protein family HMM PF04474 YP_002236585.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_002236586.1 identified by similarity to SP:P0AFF4; match to protein family HMM PF03825; match to protein family HMM PF07690; match to protein family HMM TIGR00889 YP_002236587.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_002236588.1 identified by similarity to PDB:1YHD_A; match to protein family HMM PF04362 YP_002236589.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002236590.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002236591.1 Similar to Escherichia coli yggL; identified by similarity to SP:P38521; match to protein family HMM PF04320 YP_002236592.1 identified by similarity to RF:NP_806712.1 YP_002236593.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002236594.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002236595.1 identified by match to protein family HMM PF02594; match to protein family HMM TIGR00251 YP_002236596.1 identified by match to protein family HMM PF02325 YP_002236597.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002236598.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_002236599.1 activates the csgBA and csgDEFG operons involved in biofilm formation YP_002236600.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002236601.1 identified by similarity to SP:P0A8W7; match to protein family HMM PF02622 YP_002236602.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002236603.1 identified by similarity to SP:P0AGL7; match to protein family HMM PF04452; match to protein family HMM TIGR00046 YP_002236604.1 identified by similarity to SP:P25736; match to protein family HMM PF04231 YP_002236605.1 identified by similarity to SP:P39902; match to protein family HMM PF03926 YP_002236606.1 identified by similarity to SP:P0AEP1; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_002236607.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002236608.1 identified by similarity to RF:NP_457481.1 YP_002236609.1 identified by similarity to RF:NP_457480.1 YP_002236610.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_002236611.1 catalyzes the formation of putrescine from agmatine YP_002236612.1 identified by similarity to SP:P32722; match to protein family HMM PF03573 YP_002236613.1 identified by Glimmer3 YP_002236614.1 identified by match to protein family HMM PF01435 YP_002236615.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002236616.1 NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate YP_002236617.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002236618.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002236619.1 participates in the regulation of osmotic pressure changes within the cel YP_002236620.1 Involved in the export of arginine YP_002236621.1 identified by match to protein family HMM PF04402 YP_002236622.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_002236623.1 identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021 YP_002236624.1 identified by Glimmer3 YP_002236625.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_002236626.1 ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms; unknown function YP_002236627.1 identified by similarity to PDB:1W2E_A; match to protein family HMM PF05164 YP_002236628.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown YP_002236629.1 exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide YP_002236630.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone YP_002236631.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_002236632.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002236633.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002236634.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_002236635.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002236636.1 identified by similarity to GB:AAC45603.1; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002236637.1 identified by similarity to GB:AAL20047.1; match to protein family HMM PF01323 YP_002236638.1 identified by similarity to GB:AAC45601.1 YP_002236639.1 identified by similarity to RF:NP_460086.1 YP_002236640.1 identified by Glimmer3 YP_002236641.1 identified by similarity to SP:Q46829; match to protein family HMM PF00232 YP_002236642.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002236643.1 Similar to Escherichia coli yqfB; identified by similarity to SP:P67603; match to protein family HMM PF06164 YP_002236644.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002236645.1 physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator YP_002236646.1 Similar to Escherichia coli ygfY; identified by match to protein family HMM PF03937 YP_002236647.1 identified by match to protein family HMM PF07254 YP_002236648.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic YP_002236649.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002236650.1 DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity YP_002236651.1 5'-3' single-stranded-DNA-specific exonuclease YP_002236652.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_002236653.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002236654.1 catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate YP_002236655.1 Similar to Escherichia coli ygeR; identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_002236656.1 identified by match to protein family HMM PF00589 YP_002236657.1 identified by similarity to GB:CAD02866.1 YP_002236658.1 identified by similarity to GB:CAL13400.1 YP_002236659.1 identified by similarity to GB:CAG75214.1 YP_002236660.1 identified by similarity to GB:CAG75215.1 YP_002236661.1 identified by match to protein family HMM PF07690 YP_002236662.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236663.1 identified by match to protein family HMM PF02627 YP_002236664.1 identified by match to protein family HMM PF00248 YP_002236665.1 identified by similarity to SP:P0A754; match to protein family HMM PF02525 YP_002236666.1 identified by similarity to GB:CAK07842.1 YP_002236667.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236668.1 identified by Glimmer3 YP_002236669.1 identified by match to protein family HMM PF07081 YP_002236670.1 identified by match to protein family HMM PF03795 YP_002236671.1 identified by similarity to SP:P15905; match to protein family HMM PF01022 YP_002236672.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935 YP_002236673.1 identified by similarity to SP:P08692; match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_002236674.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002236675.1 Similar to Escherichia coli yoaC; identified by similarity to SP:P64492 YP_002236676.1 part of a multidrug efflux system involved in resistance to acriflavin, puromycin, erytjhromycin and tetraphenylarsonium chloride; member of the outer membrane factor (OMF) family YP_002236677.1 possibly part of a tripartite efflux system composed of MdtN, MdtO and MdtP which could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride YP_002236678.1 with MdtO and MdtP is involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride YP_002236679.1 identified by similarity to GB:ABD94682.1 YP_002236680.1 Similar to Escherichia coli yjdI; identified by similarity to SP:P0AF59; match to protein family HMM PF06902 YP_002236681.1 identified by similarity to SP:P39274 YP_002236682.1 identified by match to protein family HMM PF00563 YP_002236683.1 identified by similarity to SP:P08191; match to protein family HMM PF00419; match to protein family HMM PF09160 YP_002236684.1 identified by similarity to SP:P08190; match to protein family HMM PF00419 YP_002236685.1 identified by similarity to SP:P08189; match to protein family HMM PF00419 YP_002236686.1 identified by similarity to SP:P30130; match to protein family HMM PF00577 YP_002236687.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002236688.1 identified by match to protein family HMM PF00419 YP_002236689.1 identified by similarity to SP:P04128; match to protein family HMM PF00419 YP_002236690.1 inversion of on/off regulator of fimA YP_002236691.1 identified by Glimmer3 YP_002236692.1 inversion of on/off regulator of fimA YP_002236693.1 identified by Glimmer3 YP_002236694.1 identified by Glimmer3 YP_002236695.1 identified by similarity to GB:ABF09472.1 YP_002236696.1 identified by match to protein family HMM PF00419 YP_002236697.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002236698.1 identified by match to protein family HMM PF00577 YP_002236699.1 identified by similarity to GB:AAZ86820.1 YP_002236700.1 identified by match to protein family HMM PF03824 YP_002236701.1 identified by match to protein family HMM PF01047 YP_002236702.1 identified by match to protein family HMM PF00892 YP_002236703.1 identified by match to protein family HMM PF07338 YP_002236704.1 identified by similarity to SP:P12267; match to protein family HMM PF00419 YP_002236705.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002236706.1 identified by similarity to SP:P21647; match to protein family HMM PF00577 YP_002236707.1 identified by similarity to GB:AAP44769.1; match to protein family HMM PF00419 YP_002236708.1 identified by match to protein family HMM PF00419 YP_002236709.1 identified by match to protein family HMM PF00563 YP_002236710.1 identified by match to protein family HMM PF00196 YP_002236711.1 identified by match to protein family HMM PF07238 YP_002236712.1 identified by match to protein family HMM PF00248 YP_002236713.1 identified by similarity to SP:P0AAD6 YP_002236714.1 identified by match to protein family HMM PF05232 YP_002236715.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236716.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002236717.1 identified by match to protein family HMM PF06178 YP_002236718.1 identified by similarity to SP:P21258; match to protein family HMM PF07676 YP_002236719.1 identified by Glimmer3 YP_002236720.1 catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate YP_002236721.1 identified by similarity to SP:P45598; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_002236722.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236723.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments YP_002236724.1 identified by similarity to SP:P40714; match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002236725.1 identified by similarity to GB:AAB71432.1 YP_002236726.1 identified by similarity to GB:CAC44121.1; match to protein family HMM PF01547 YP_002236727.1 identified by similarity to GB:CAC44120.1; match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002236728.1 identified by similarity to GB:CAC44119.1; match to protein family HMM PF00528 YP_002236729.1 identified by similarity to GB:CAC44118.1; match to protein family HMM PF00528 YP_002236730.1 identified by Glimmer3 YP_002236731.1 identified by similarity to SP:Q05527; match to protein family HMM PF07883 YP_002236732.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002236733.1 activates the transcription of the lysA gene encoding diaminopimelate decarboxylase YP_002236734.1 catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding YP_002236735.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236736.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002236737.1 identified by match to protein family HMM PF00232 YP_002236738.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002236739.1 identified by match to protein family HMM PF00583 YP_002236740.1 controls transcription of galETKM YP_002236741.1 Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1 YP_002236742.1 identified by similarity to SP:P39196; match to protein family HMM PF07690 YP_002236743.1 complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH YP_002236744.1 Similar to Escherichia coli ygdR; identified by match to protein family HMM PF06004 YP_002236745.1 Similar to Escherichia coli ygdQ; identified by match to protein family HMM PF03741 YP_002236746.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_002236747.1 identified by Glimmer3 YP_002236748.1 hydrolyzes diadenosine polyphosphate YP_002236749.1 member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr YP_002236750.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002236751.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002236752.1 identified by similarity to SP:P33554; match to protein family HMM TIGR02532 YP_002236753.1 identified by similarity to SP:P08371; match to protein family HMM TIGR02532 YP_002236754.1 identified by similarity to GB:ABJ02276.1 YP_002236755.1 identified by similarity to SP:P08372; match to protein family HMM TIGR02532 YP_002236756.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination YP_002236757.1 identified by similarity to SP:P05458; match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002236758.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity YP_002236759.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity YP_002236760.1 identified by Glimmer3 YP_002236761.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_002236762.1 identified by similarity to SP:P63883; match to protein family HMM PF01520; match to protein family HMM TIGR01409 YP_002236763.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_002236764.1 identified by similarity to GB:AAD39022.1; match to protein family HMM PF00288; match to protein family HMM PF08544 YP_002236765.1 involved in coenzyme B(12)-dependent 1, 2-propanediol degradation; important for the synthesis of propionyl coenzyme A during growth on 1,2-propanediol YP_002236766.1 identified by similarity to SP:Q9XDM6; match to protein family HMM TIGR02528 YP_002236767.1 identified by similarity to SP:P0A1D1; match to protein family HMM PF00936 YP_002236768.1 identified by similarity to GB:AAL20958.1; match to protein family HMM PF00936 YP_002236769.1 identified by similarity to GB:AAD39017.1; match to protein family HMM PF00037; match to protein family HMM PF01512 YP_002236770.1 identified by similarity to GB:AAD39016.1; match to protein family HMM PF00465 YP_002236771.1 identified by similarity to GB:AAD39015.1; match to protein family HMM PF00171 YP_002236772.1 identified by similarity to GB:AAD39014.1; match to protein family HMM PF01923; match to protein family HMM PF03928; match to protein family HMM TIGR00636 YP_002236773.1 identified by similarity to GB:AAD39013.1; match to protein family HMM PF03319 YP_002236774.1 identified by similarity to GB:AAD39012.1 YP_002236775.1 identified by match to protein family HMM PF06130 YP_002236776.1 identified by similarity to GB:AAD39010.1; match to protein family HMM PF00936 YP_002236777.1 identified by similarity to RF:NP_456595.1; match to protein family HMM PF00936 YP_002236778.1 identified by similarity to GB:AAD39008.1 YP_002236779.1 identified by similarity to GB:AAB84105.2; match to protein family HMM PF08841 YP_002236780.1 identified by similarity to GB:AAB84104.1; match to protein family HMM PF02287 YP_002236781.1 identified by similarity to GB:AAB84103.1; match to protein family HMM PF02288 YP_002236782.1 identified by similarity to SP:P37450; match to protein family HMM PF02286 YP_002236783.1 identified by similarity to SP:P37449; match to protein family HMM PF00936 YP_002236784.1 identified by similarity to SP:P0A1C7; match to protein family HMM PF00936 YP_002236785.1 identified by Glimmer3 YP_002236786.1 identified by similarity to SP:P37451; match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002236787.1 identified by similarity to SP:Q05587; match to protein family HMM PF00165 YP_002236788.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_002236789.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002236790.1 catalyzes the interconversion of cobalt-precorrin-8X and cobyrinic acid in the anaerobic biosynthesis of cobalamin YP_002236791.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_002236792.1 catalyzes the methylation of C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W-a YP_002236793.1 catalyzes the methylation of either C-15 or C-5 in cobalt-precorrin-6Y to form cobalt-precorrin-7W; decarboxylating YP_002236794.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_002236795.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_002236796.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_002236797.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_002236798.1 identified by similarity to SP:Q05592; match to protein family HMM PF06180 YP_002236799.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_002236800.1 catalyzes the ATP-dependent transport of cobalt YP_002236801.1 periplasmic cobalt binding component of the cobalt transport system YP_002236802.1 identified by similarity to SP:Q05598; match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_002236803.1 with CbiNQ forms the ABC transporter for cobalt import YP_002236804.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002236805.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP YP_002236806.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002236807.1 identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357 YP_002236808.1 identified by match to protein family HMM TIGR03352 YP_002236809.1 identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347 YP_002236810.1 identified by match to protein family HMM PF05947; match to protein family HMM TIGR03359 YP_002236811.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_002236812.1 identified by similarity to GB:ABE08652.1 YP_002236813.1 identified by similarity to GB:CAE15609.1 YP_002236814.1 identified by similarity to GB:CAE15609.1 YP_002236815.1 identified by similarity to GB:ABE08648.1 YP_002236816.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002236817.1 identified by match to protein family HMM PF00691 YP_002236818.1 identified by match to protein family HMM TIGR03349 YP_002236819.1 identified by similarity to GB:AAN81832.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353 YP_002236820.1 identified by similarity to GB:AAN81831.1 YP_002236821.1 identified by Glimmer3 YP_002236822.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_002236823.1 identified by match to protein family HMM PF00899 YP_002236824.1 identified by similarity to SP:P0AGF2; match to protein family HMM PF02657; match to protein family HMM TIGR03391 YP_002236825.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR03392 YP_002236826.1 Similar to Escherichia coli ygdI; identified by match to protein family HMM PF06004 YP_002236827.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_002236828.1 identified by match to protein family HMM PF04241 YP_002236829.1 identified by similarity to SP:P0ADR6 YP_002236830.1 regulates expression of genes involved in L-fucose utilization YP_002236831.1 identified by similarity to SP:P0AEN8; match to protein family HMM PF05025 YP_002236832.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR02628 YP_002236833.1 identified by Glimmer3 YP_002236834.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_002236835.1 identified by similarity to SP:P11551; match to protein family HMM PF07690; match to protein family HMM TIGR00885 YP_002236836.1 identified by Glimmer3 YP_002236837.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate YP_002236838.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638 YP_002236839.1 has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups YP_002236840.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01728 YP_002236841.1 identified by Glimmer3 YP_002236842.1 identified by match to protein family HMM PF00296 YP_002236843.1 identified by match to protein family HMM PF01266 YP_002236844.1 identified by similarity to GB:AAN68354.1 YP_002236845.1 identified by match to protein family HMM PF00005 YP_002236846.1 identified by match to protein family HMM PF00528 YP_002236847.1 identified by match to protein family HMM PF03180 YP_002236848.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002236849.1 identified by similarity to GB:AAY92533.1 YP_002236850.1 identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728 YP_002236851.1 identified by similarity to SP:P30744; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_002236852.1 identified by similarity to SP:P0AAD6; match to protein family HMM TIGR00814 YP_002236853.1 identified by similarity to SP:P0ADS1; match to protein family HMM PF03641 YP_002236854.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_002236855.1 SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function YP_002236856.1 identified by similarity to SP:Q46919; match to protein family HMM PF04287 YP_002236857.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp YP_002236858.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002236859.1 identified by similarity to SP:Q46916; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00893 YP_002236860.1 identified by similarity to SP:Q46915; match to protein family HMM PF01188 YP_002236861.1 Synonym GlucD; identified by similarity to SP:P0AES2; match to protein family HMM PF01188; match to protein family HMM TIGR03247 YP_002236862.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002236863.1 part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system YP_002236864.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_002236865.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP YP_002236866.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_002236867.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002236868.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002236869.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002236870.1 identified by Glimmer3 YP_002236871.1 Similar to Escherichia coli ygcF; identified by match to protein family HMM PF04055 YP_002236872.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR00039; match to protein family HMM TIGR03367 YP_002236873.1 catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity YP_002236874.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_002236875.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_002236876.1 catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3 YP_002236877.1 identified by similarity to GB:AAG42466.1; match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470 YP_002236878.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002236879.1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ YP_002236880.1 converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis YP_002236881.1 identified by similarity to GB:AAG42462.1 YP_002236882.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_002236883.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002236884.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002236885.1 catalyzes the modification of U13 in tRNA(Glu) YP_002236886.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002236887.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins YP_002236888.1 outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus YP_002236889.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_002236890.1 identified by similarity to GB:AAX66748.1 YP_002236891.1 identified by match to protein family HMM PF07690 YP_002236892.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236893.1 SlyA-like; identified by similarity to SP:Q9F8R8; match to protein family HMM PF01047 YP_002236894.1 identified by similarity to GB:AAY57854.1; match to protein family HMM PF02441; match to protein family HMM TIGR00421 YP_002236895.1 identified by similarity to GB:AAY57855.1; match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_002236896.1 identified by similarity to GB:AAY57856.1 YP_002236897.1 identified by match to protein family HMM PF01848 YP_002236898.1 This protein performs the mismatch recognition step during the DNA repair process YP_002236899.1 identified by similarity to SP:P20605; match to protein family HMM PF02661 YP_002236900.1 with HmuTU is involved in the transport of hemin YP_002236901.1 identified by similarity to SP:Q56992; match to protein family HMM PF01032 YP_002236902.1 identified by similarity to SP:Q56991; match to protein family HMM PF01497 YP_002236903.1 identified by similarity to SP:Q56990; match to protein family HMM PF05171 YP_002236904.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_002236905.1 identified by match to protein family HMM PF05169; match to protein family HMM TIGR02174 YP_002236906.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002236907.1 identified by match to protein family HMM PF03547 YP_002236908.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002236909.1 Similar to Escherichia coli ygbA; identified by similarity to SP:P25728 YP_002236910.1 identified by similarity to SP:Q56955; match to protein family HMM PF00950 YP_002236911.1 identified by similarity to GB:AAU94304.1; match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002236912.1 identified by similarity to GB:AAU94303.1; match to protein family HMM PF00005 YP_002236913.1 identified by similarity to GB:ABC70487.1; match to protein family HMM PF01297 YP_002236914.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236915.1 identified by match to protein family HMM PF00480 YP_002236916.1 identified by similarity to SP:P69791; match to protein family HMM PF02255 YP_002236917.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002236918.1 identified by match to protein family HMM PF02302 YP_002236919.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002236920.1 identified by match to protein family HMM PF02264 YP_002236921.1 identified by similarity to PDB:1UUQ_A YP_002236922.1 identified by match to protein family HMM PF00232 YP_002236923.1 identified by similarity to SP:P19323; match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002236924.1 identified by similarity to SP:P24193; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_002236925.1 identified by match to protein family HMM PF01924; match to protein family HMM TIGR00075 YP_002236926.1 HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase YP_002236927.1 GTP hydrolase involved in nickel liganding into hydrogenases YP_002236928.1 plays a role in hydrogenase nickel cofactor insertion YP_002236929.1 regulates several genes involved in the formate hydrogenlyase system; seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon YP_002236930.1 identified by similarity to SP:P0AAK1; match to protein family HMM PF00037 YP_002236931.1 catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen; formate hydrogenlyase comprises of a formate dehydrogenase, unidentified electron carriers and a hydrogenase (subunit 3) YP_002236932.1 identified by similarity to SP:P16430; match to protein family HMM PF00146 YP_002236933.1 identified by similarity to SP:P16431; match to protein family HMM PF00329; match to protein family HMM PF00346 YP_002236934.1 electron transfer protein for hydrogenase-3; the formate hydrogenlyase complex comprises of a formate dehydrogenase, unidentified electron carriers and hydrogenase-3; in this non-energy conserving pathway, molecular hydrogen and carbodioxide are released from formate YP_002236935.1 identified by similarity to SP:P16433; match to protein family HMM PF01058 YP_002236936.1 identified by match to protein family HMM PF07450 YP_002236937.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE YP_002236938.1 identified by match to protein family HMM PF08845 YP_002236939.1 identified by similarity to SP:P24240; match to protein family HMM PF00232 YP_002236940.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002236941.1 identified by similarity to SP:P24242; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002236942.1 involved in electron transport from formate to hydrogen YP_002236943.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_002236944.1 identified by similarity to SP:P23516; match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_002236945.1 identified by match to protein family HMM PF07690 YP_002236946.1 identified by match to protein family HMM PF09339 YP_002236947.1 identified by similarity to SP:Q9KBI9; match to protein family HMM PF03737 YP_002236948.1 identified by similarity to PDB:1YGY_A; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002236949.1 catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase YP_002236950.1 detoxifies nitric oxide using NADH YP_002236951.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon YP_002236952.1 catalyzes the conversion of D-arabinose 5-phosphate to D-ribulose-5-phosphate YP_002236953.1 regulates genes involved in glucitol utilization YP_002236954.1 regulator for glucitol utilization YP_002236955.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate YP_002236956.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002236957.1 identified by similarity to SP:P56580; match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825 YP_002236958.1 identified by similarity to SP:P56579; match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_002236959.1 membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan YP_002236960.1 identified by Glimmer3 YP_002236961.1 identified by match to protein family HMM PF00005 YP_002236962.1 identified by match to protein family HMM PF00950 YP_002236963.1 identified by match to protein family HMM PF01297 YP_002236964.1 Similar to Escherichia coli ygaD; identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_002236965.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002236966.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002236967.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002236968.1 affects carbohydrate metabolism; has regulatory role in many processes YP_002236969.1 identified by match to protein family HMM PF04972 YP_002236970.1 YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent YP_002236972.1 involved in the first step of glutathione biosynthesis YP_002236973.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002236974.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_002236975.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970 YP_002236976.1 identified by similarity to SP:P0AEJ0; match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002236977.1 identified by similarity to SP:P27303; match to protein family HMM PF00529; match to protein family HMM TIGR00998 YP_002236978.1 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB YP_002236979.1 Similar to Escherichia coli ygaH; identified by similarity to SP:P43667 YP_002236980.1 identified by match to protein family HMM PF03591 YP_002236981.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine YP_002236982.1 with ProVX is involved in the high-affinity uptake of glycine betaine YP_002236983.1 identified by similarity to SP:P14175; match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_002236984.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002236985.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002236986.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002236987.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194 YP_002236988.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002236989.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002236990.1 identified by similarity to GB:AAL21687.1; match to protein family HMM PF05957 YP_002236992.1 Similar to Escherichia coli ygaW; identified by similarity to SP:P64553; match to protein family HMM PF06610 YP_002236993.1 identified by Glimmer3 YP_002236994.1 identified by similarity to SP:P0ACG1; match to protein family HMM PF00816 YP_002236995.1 identified by similarity to GB:AAX66637.1 YP_002236996.1 identified by match to protein family HMM PF05118 YP_002236997.1 identified by match to protein family HMM PF00581 YP_002236998.1 Similar to Escherichia coli ygaV; identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_002236999.1 identified by similarity to SP:P41407; match to protein family HMM PF02525 YP_002237000.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237001.1 identified by match to protein family HMM PF01569 YP_002237002.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_002237003.1 identified by Glimmer3 YP_002237004.1 identified by similarity to GB:BAA24014.1; match to protein family HMM PF00171 YP_002237005.1 identified by Glimmer3 YP_002237006.1 identified by match to protein family HMM PF00419 YP_002237007.1 identified by Glimmer3 YP_002237008.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002237009.1 identified by match to protein family HMM PF00577 YP_002237010.1 identified by match to protein family HMM PF00419 YP_002237011.1 identified by match to protein family HMM PF00345 YP_002237012.1 identified by match to protein family HMM PF00419 YP_002237013.1 identified by similarity to SP:Q01269; match to protein family HMM PF00497 YP_002237015.1 identified by match to protein family HMM PF00106 YP_002237016.1 identified by match to protein family HMM PF02826 YP_002237017.1 identified by match to protein family HMM PF00596 YP_002237018.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237019.1 identified by match to protein family HMM PF00497 YP_002237020.1 identified by match to protein family HMM PF03171 YP_002237021.1 identified by match to protein family HMM PF01261 YP_002237022.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_002237023.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237024.1 identified by match to protein family HMM PF00112; match to protein family HMM PF01471 YP_002237025.1 identified by match to protein family HMM PF02082 YP_002237026.1 identified by similarity to GB:AAP43110.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002237027.1 identified by similarity to GB:AAP43109.1; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002237028.1 identified by match to protein family HMM PF00165 YP_002237030.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237031.1 identified by similarity to GB:CAE36294.1 YP_002237032.1 identified by match to protein family HMM PF07883 YP_002237033.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002237034.1 identified by Glimmer3 YP_002237035.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_002237037.1 identified by match to protein family HMM PF00580 YP_002237038.1 identified by match to protein family HMM PF07693 YP_002237039.1 identified by similarity to GB:ABF09044.1 YP_002237040.1 identified by similarity to GB:ABF09045.1 YP_002237041.1 identified by Glimmer3 YP_002237042.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002237043.1 Similar to Escherichia coli yfjG; identified by match to protein family HMM PF03364 YP_002237044.1 identified by similarity to SP:P52119; match to protein family HMM PF03658 YP_002237045.1 identified by match to protein family HMM PF04355 YP_002237046.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002237047.1 catalyzes the phosphorylation of NAD to NADP YP_002237048.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002237049.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002237050.1 identified by match to protein family HMM PF01578 YP_002237051.1 with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins YP_002237052.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002237053.1 Essential for efficient processing of 16S rRNA YP_002237054.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002237055.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002237056.1 identified by similarity to GB:AAZ35869.1 YP_002237057.1 identified by match to protein family HMM PF03929 YP_002237058.1 identified by match to protein family HMM PF00691 YP_002237059.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002237060.1 Similar to Escherichia coli yfiR; identified by similarity to SP:P64548 YP_002237061.1 identified by Glimmer3 YP_002237062.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_002237063.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_002237064.1 identified by match to protein family HMM PF08450 YP_002237065.1 catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002237066.1 associated with 30S ribosomal subunit; interferes with translation elongation YP_002237067.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline YP_002237068.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA YP_002237069.1 identified by similarity to PDB:1XAF_A; match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002237070.1 identified by similarity to SP:P63284; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002237071.1 identified by similarity to SP:P0AEX3; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002237073.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_002237074.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629 YP_002237075.1 identified by match to protein family HMM PF03942 YP_002237076.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002237077.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002237078.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002237079.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit YP_002237080.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_002237081.1 identified by match to protein family HMM PF05175 YP_002237082.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002237083.1 identified by Glimmer3 YP_002237084.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_002237085.1 identified by similarity to SP:P0AFX7; match to protein family HMM PF03872; match to protein family HMM PF03873 YP_002237086.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP YP_002237087.1 involved in the reduction of the SoxR iron-sulfur cluster YP_002237088.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002237089.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins YP_002237090.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002237091.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002237092.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002237093.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002237094.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002237095.1 identified by match to protein family HMM PF00037 YP_002237096.1 Similar to Escherichia coli yfhH; identified by similarity to SP:P37767; match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002237097.1 identified by match to protein family HMM TIGR01545 YP_002237098.1 identified by similarity to SP:P68398; match to protein family HMM PF00383 YP_002237099.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_002237100.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002237101.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002237102.1 identified by similarity to GB:AAN81527.1 YP_002237103.1 Similar to Escherichia coli yfhA; identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728 YP_002237104.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA YP_002237105.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_002237106.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002237107.1 identified by match to protein family HMM PF07681 YP_002237108.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters YP_002237109.1 identified by similarity to SP:P54901; match to protein family HMM PF00874 YP_002237110.1 identified by Glimmer3 YP_002237111.1 identified by match to protein family HMM PF06226 YP_002237112.1 identified by match to protein family HMM PF03824 YP_002237114.1 identified by similarity to SP:P0ADG4; match to protein family HMM PF00459 YP_002237115.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_002237116.1 regulates the expression of the iscRSUA operon YP_002237117.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_002237118.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_002237119.1 forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein YP_002237120.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_002237121.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_002237122.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_002237123.1 identified by similarity to SP:P0C0L9; match to protein family HMM PF04384; match to protein family HMM TIGR03412 YP_002237124.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_002237125.1 enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I YP_002237127.1 identified by similarity to GB:AAV76351.1 YP_002237128.1 catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds YP_002237129.1 identified by match to protein family HMM PF01835; match to protein family HMM PF07703 YP_002237130.1 penicillin-insensitive transglycosylase/transpeptidase YP_002237131.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002237132.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002237133.1 identified by Glimmer3 YP_002237134.1 Similar to Escherichia coli yfgA YP_002237135.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002237136.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002237137.1 identified by similarity to GB:AAP83327.1 YP_002237138.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis YP_002237139.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002237140.1 identified by match to protein family HMM PF01408 YP_002237141.1 identified by match to protein family HMM PF07191 YP_002237142.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002237143.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002237144.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002237145.1 identified by match to protein family HMM PF00589 YP_002237146.1 identified by match to protein family HMM PF05930 YP_002237147.1 identified by similarity to SP:P20356 YP_002237149.1 identified by match to protein family HMM TIGR02783 YP_002237150.1 identified by match to protein family HMM TIGR02780 YP_002237151.1 identified by similarity to GB:AAN33568.1 YP_002237152.1 identified by similarity to GB:AAN33569.1 YP_002237153.1 identified by Glimmer3 YP_002237154.1 identified by similarity to GB:ABD68811.1 YP_002237155.1 identified by similarity to GB:CAD58555.1 YP_002237156.1 identified by Glimmer3 YP_002237157.1 identified by similarity to GB:ABI41347.1 YP_002237159.1 identified by match to protein family HMM PF07690 YP_002237160.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237161.1 identified by similarity to GB:AAL21400.1 YP_002237162.1 Similar to Escherichia coli yfgF; identified by match to protein family HMM PF00563; match to protein family HMM PF05231 YP_002237163.1 identified by similarity to SP:P0AFL6; match to protein family HMM PF02541 YP_002237164.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002237165.1 identified by similarity to GB:CAG76448.1 YP_002237166.1 identified by match to protein family HMM PF07470 YP_002237167.1 identified by similarity to GB:CAC44457.1; match to protein family HMM PF07690 YP_002237168.1 identified by match to protein family HMM PF00295 YP_002237169.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002237170.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002237171.1 identified by Glimmer3 YP_002237172.1 identified by similarity to GB:AAK58463.1; match to protein family HMM PF00480 YP_002237173.1 converts 6-phospho-beta-D-glucosyl-(1,4)-D-glucose to glucose and glucose 6-phosphate; required for cellobiose uptake and metabolism YP_002237174.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002237175.1 identified by similarity to SP:P0AGM7; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002237176.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP YP_002237177.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 YP_002237178.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_002237179.1 identified by match to protein family HMM PF01435; match to protein family HMM PF07721 YP_002237180.1 identified by Glimmer3 YP_002237181.1 identified by similarity to SP:P0AFI9; match to protein family HMM PF01594 YP_002237182.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine YP_002237183.1 negative transcriptional regulator of the gcvTHP operon YP_002237184.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002237185.1 identified by match to protein family HMM PF06804 YP_002237186.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002237187.1 identified by similarity to GB:ABB67042.1; match to protein family HMM PF04228 YP_002237188.1 identified by similarity to GB:BAB36759.1; match to protein family HMM PF05127 YP_002237189.1 Displays esterase activity toward palmitoyl-CoA and pNP-butyrate YP_002237190.1 identified by similarity to SP:Q3YZ80 YP_002237191.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_002237192.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002237193.1 identified by similarity to SP:P24177; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002237194.1 identified by Glimmer3 YP_002237195.1 unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic) YP_002237196.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_002237197.1 identified by similarity to GB:ABB67033.1; match to protein family HMM PF06674 YP_002237198.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002237199.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_002237200.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_002237201.1 identified by similarity to SP:Q9ZFV7; match to protein family HMM PF00936 YP_002237202.1 identified by similarity to SP:P0A208; match to protein family HMM TIGR02528 YP_002237203.1 identified by match to protein family HMM PF06249 YP_002237204.1 identified by similarity to SP:Q9ZFV4; match to protein family HMM PF01923 YP_002237205.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002237206.1 identified by similarity to SP:P41791; match to protein family HMM PF00936 YP_002237207.1 identified by similarity to SP:P41792; match to protein family HMM PF03319 YP_002237208.1 identified by similarity to SP:P77445; match to protein family HMM PF00171 YP_002237209.1 identified by similarity to SP:P0A206; match to protein family HMM TIGR02529 YP_002237210.1 identified by similarity to SP:P41795; match to protein family HMM PF00465 YP_002237211.1 identified by similarity to SP:P41796; match to protein family HMM PF04346 YP_002237212.1 ethanolamine utilization protein EutA YP_002237213.1 identified by similarity to SP:P19264; match to protein family HMM PF06751 YP_002237214.1 catalyzes the formation of acetaldehyde from ethanolamine YP_002237215.1 identified by similarity to SP:P0A1C9; match to protein family HMM PF00936 YP_002237216.1 identified by similarity to SP:Q9ZFU8; match to protein family HMM PF00936 YP_002237217.1 activates the transcription of the ethanolamine utilization operon YP_002237218.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_002237219.1 identified by similarity to SP:P36548; match to protein family HMM PF01520 YP_002237220.1 identified by match to protein family HMM PF00583 YP_002237222.1 Similar to Escherichia coli yfeY; identified by match to protein family HMM PF06572 YP_002237223.1 Similar to Escherichia coli yfeX; identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_002237224.1 identified by similarity to GB:ABF03507.1; match to protein family HMM PF04480 YP_002237225.1 identified by similarity to SP:P16700; match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_002237226.1 identified by similarity to SP:P16701; match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_002237227.1 Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import YP_002237228.1 identified by similarity to SP:P16676; match to protein family HMM PF00005; match to protein family HMM TIGR00968 YP_002237229.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_002237230.1 identified by similarity to PDB:2GXF_A YP_002237231.1 identified by similarity to SP:P40193; match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002237232.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_002237233.1 identified by similarity to GB:CAD07666.1 YP_002237234.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose YP_002237235.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system YP_002237236.1 identified by similarity to SP:P16481; match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002237237.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_002237238.1 role in sulfur assimilation YP_002237239.1 identified by Glimmer3 YP_002237240.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure YP_002237241.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002237242.1 identified by similarity to SP:P0AD40 YP_002237243.1 Similar to Escherichia coli yfeH; identified by match to protein family HMM PF01758 YP_002237244.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237245.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002237246.1 Similar to Escherichia coli yfeD; identified by similarity to SP:P27238 YP_002237248.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF05231 YP_002237249.1 identified by similarity to SP:P0AFF2; match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002237250.1 identified by similarity to SP:P0A769; match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_002237251.1 Similar to Escherichia coli ypeC; identified by similarity to SP:P64544 YP_002237252.1 identified by match to protein family HMM PF00248 YP_002237253.1 identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002237254.1 Similar to Escherichia coli yfeO; identified by match to protein family HMM PF00654 YP_002237255.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_002237256.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002237257.1 Similar to Escherichia coli ypdA; identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002237258.1 identified by match to protein family HMM PF00155 YP_002237259.1 MFS transporter family member induced in the presence of cyanate as part of a 3 gene operon; not essential YP_002237260.1 identified by similarity to SP:O34598; match to protein family HMM PF00383 YP_002237261.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_002237262.1 identified by similarity to GB:CAE12593.1 YP_002237263.1 identified by similarity to GB:AAT45029.1 YP_002237264.1 Similar to Escherichia coli yfdC YP_002237265.1 identified by match to protein family HMM PF04333 YP_002237266.1 identified by similarity to SP:P10384; match to protein family HMM PF03349 YP_002237267.1 Similar to Escherichia coli yfcZ; identified by similarity to SP:P0AD33; match to protein family HMM PF04175; match to protein family HMM TIGR00743 YP_002237268.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_002237269.1 multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate YP_002237270.1 identified by similarity to SP:P76502; match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_002237271.1 identified by match to protein family HMM PF01713 YP_002237272.1 involved in methylation of ribosomal protein L3 YP_002237273.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002237274.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_002237275.1 Similar to Escherichia coli yfcA; identified by match to protein family HMM PF01925 YP_002237276.1 identified by match to protein family HMM PF04315 YP_002237277.1 Similar to Escherichia coli yfcL; identified by similarity to SP:P64540; match to protein family HMM PF08891 YP_002237278.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_002237279.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002237280.1 identified by match to protein family HMM PF07690 YP_002237281.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002237282.1 identified by match to protein family HMM PF02302 YP_002237283.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002237284.1 identified by match to protein family HMM PF02255 YP_002237285.1 identified by similarity to SP:P26218; match to protein family HMM PF02264 YP_002237286.1 in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system; lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm; inner membrane-anchored protein YP_002237287.1 identified by similarity to SP:P05459; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002237288.1 identified by similarity to SP:P08390; match to protein family HMM PF01118; match to protein family HMM PF02774 YP_002237289.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002237290.1 identified by similarity to SP:P0ABP7; match to protein family HMM PF09335 YP_002237291.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002237292.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002237293.1 identified by match to protein family HMM PF05036 YP_002237294.1 membrane protein required for colicin V production YP_002237295.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002237296.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_002237297.1 identified by Glimmer3 YP_002237298.1 identified by similarity to SP:P09551; match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_002237299.1 identified by Glimmer3 YP_002237300.1 identified by similarity to SP:P02910; match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_002237301.1 identified by similarity to SP:P52094; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237302.1 identified by similarity to SP:P0AEU3; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237303.1 identified by similarity to SP:P07109; match to protein family HMM PF00005 YP_002237304.1 identified by match to protein family HMM PF00583 YP_002237305.1 identified by Glimmer3 YP_002237306.1 Similar to Escherichia coli yfcH; identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM PF08338; match to protein family HMM TIGR01777 YP_002237307.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_002237308.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002237309.1 identified by match to protein family HMM PF02798 YP_002237310.1 identified by similarity to SP:P67095; match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002237311.1 identified by similarity to SP:P65556; match to protein family HMM PF00293 YP_002237312.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_002237313.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002237314.1 identified by Glimmer3 YP_002237315.1 identified by match to protein family HMM PF04217 YP_002237316.1 Similar to Escherichia coli yfbU; identified by match to protein family HMM PF03887 YP_002237317.1 identified by similarity to SP:P77625; match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002237318.1 Similar to Escherichia coli yfbS; identified by match to protein family HMM PF02080; match to protein family HMM PF03600; match to protein family HMM PF06808 YP_002237319.1 identified by similarity to SP:P76491; match to protein family HMM PF01966 YP_002237320.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_002237321.1 identified by Glimmer3 YP_002237322.1 identified by similarity to SP:P36771; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237323.1 identified by Glimmer3 YP_002237324.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237325.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002237326.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms YP_002237327.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237328.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_002237329.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237330.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237331.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237332.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237333.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237334.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002237335.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237336.1 Catalyzes the transfer of electrons from NADH to quinone YP_002237337.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002237338.1 identified by match to protein family HMM PF00583 YP_002237339.1 identified by similarity to SP:P38051; match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_002237340.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_002237341.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA YP_002237342.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_002237343.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_002237344.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923 YP_002237345.1 identified by similarity to SP:P52006; match to protein family HMM PF00293 YP_002237346.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 YP_002237347.1 identified by Glimmer3 YP_002237348.1 identified by similarity to SP:P76471; match to protein family HMM PF07437 YP_002237349.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR00200 YP_002237350.1 Similar to Escherichia coli yfaX; identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002237351.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002237352.1 Similar to Escherichia coli yfaV; identified by match to protein family HMM PF07690 YP_002237353.1 identified by match to protein family HMM PF03328 YP_002237354.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate YP_002237355.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters YP_002237356.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor YP_002237357.1 catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell YP_002237358.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic YP_002237359.1 identified by Glimmer3 YP_002237360.1 plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases YP_002237361.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_002237362.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002237363.1 Involved in ubiquinone biosynthesis YP_002237364.1 negatively supercoils closed circular double-stranded DNA YP_002237365.1 identified by similarity to SP:P14376; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002237366.1 two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF YP_002237367.1 identified by similarity to SP:P39838; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_002237368.1 identified by Glimmer3 YP_002237369.1 allows for ions and hydrophilic solutes to cross the outer membrane YP_002237370.1 catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway YP_002237371.1 identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002237372.1 identified by similarity to SP:P05050; match to protein family HMM PF03171 YP_002237373.1 efflux pump for the antibacterial peptide microcin J25 YP_002237374.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_002237375.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002237376.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002237377.1 serine protease inhibitor, inhibits trypsin and other proteases YP_002237378.1 identified by match to protein family HMM PF01594 YP_002237379.1 identified by Glimmer3 YP_002237380.1 Similar to Escherichia coli ybiJ; identified by similarity to SP:P0AAX5; match to protein family HMM PF07338 YP_002237381.1 identified by Glimmer3 YP_002237382.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_002237383.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237384.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237385.1 identified by match to protein family HMM PF00497 YP_002237386.1 identified by similarity to GB:AAS12880.1 YP_002237387.1 identified by match to protein family HMM PF03807; match to protein family HMM TIGR00112 YP_002237388.1 identified by match to protein family HMM PF00884 YP_002237389.1 identified by similarity to SP:P0AD24; match to protein family HMM PF07208 YP_002237390.1 identified by match to protein family HMM PF04245 YP_002237391.1 identified by match to protein family HMM PF00392; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002237392.1 identified by similarity to SP:P37128; match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_002237393.1 identified by match to protein family HMM PF00144 YP_002237394.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237395.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002237396.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002237397.1 catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA YP_002237398.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance YP_002237400.1 Similar to Escherichia coli yejF; identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002237401.1 Similar to Escherichia coli yejE; identified by match to protein family HMM PF00528 YP_002237402.1 Similar to Escherichia coli yejB; identified by match to protein family HMM PF00528 YP_002237403.1 Similar to Escherichia coli yejA; identified by match to protein family HMM PF00496 YP_002237404.1 identified by similarity to SP:P76446; match to protein family HMM PF00563 YP_002237405.1 by similarity, Spr seems to have peptidase activity; involved in thermoresistance YP_002237406.1 identified by Glimmer3 YP_002237407.1 identified by match to protein family HMM PF01569 YP_002237408.1 Similar to Escherichia coli yeiR; identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002237409.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002237410.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_002237411.1 Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein YP_002237412.1 identified by match to protein family HMM PF03692 YP_002237413.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237414.1 identified by Glimmer3 YP_002237415.1 identified by similarity to SP:P0ADK4 YP_002237416.1 identified by match to protein family HMM PF00529 YP_002237417.1 identified by similarity to SP:P33026; match to protein family HMM PF07690; match to protein family HMM TIGR00899 YP_002237418.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr YP_002237419.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers YP_002237420.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002237421.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_002237422.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_002237423.1 Similar to Escherichia coli yeiE; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237424.1 identified by similarity to SP:P25737; match to protein family HMM PF00324 YP_002237425.1 Cir; FeuA; CirA; receptor protein for siderophores (colicin IA, IB and V) and microcins (E492, H47, and M); TonB-dependent; able to transport monomers, dimer, and linear trimers of 2,3-dihydorxybenzoylserine; outer membrane protein YP_002237426.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_002237427.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002237428.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002237429.1 negative regulator of the mglBAC operon for galactose utilization YP_002237430.1 identified by similarity to SP:P0AEE5; match to protein family HMM PF00532 YP_002237431.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains YP_002237432.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex YP_002237433.1 identified by match to protein family HMM PF01381 YP_002237434.1 identified by similarity to SP:P0AFY5; match to protein family HMM PF02698 YP_002237435.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002237436.1 identified by match to protein family HMM PF04172; match to protein family HMM TIGR00659 YP_002237437.1 identified by match to protein family HMM PF03788 YP_002237438.1 identified by similarity to SP:P33371; match to protein family HMM PF01207 YP_002237439.1 identified by similarity to SP:Q51485; match to protein family HMM PF04966 YP_002237440.1 identified by similarity to SP:P11989; match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002237441.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002237442.1 identified by similarity to SP:P11988; match to protein family HMM PF00232 YP_002237443.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002237444.1 may be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride YP_002237445.1 identified by similarity to SP:P33366; match to protein family HMM PF09335 YP_002237446.1 identified by match to protein family HMM PF06930 YP_002237447.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7 YP_002237448.1 identified by similarity to SP:P31668; match to protein family HMM PF00583 YP_002237449.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent YP_002237450.1 identified by similarity to SP:P33363; match to protein family HMM PF00933; match to protein family HMM PF01915 YP_002237451.1 Similar to Escherichia coli osmF (yehZ); identified by match to protein family HMM PF04069 YP_002237452.1 Similar to Escherichia coli yehY; identified by match to protein family HMM PF00528 YP_002237453.1 Similar to Escherichia coli yehX; identified by match to protein family HMM PF00005 YP_002237454.1 Similar to Escherichia coli yehW; identified by match to protein family HMM PF00528 YP_002237456.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002237457.1 unknown function; when overproduced it confers drug-resistance YP_002237458.1 identified by match to protein family HMM PF07308 YP_002237459.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002237460.1 identified by similarity to SP:P0AF08 YP_002237461.1 identified by match to protein family HMM PF00583 YP_002237463.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237464.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002237465.1 identified by match to protein family HMM PF01979 YP_002237466.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237468.1 identified by Glimmer3 YP_002237469.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002237470.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002237471.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_002237472.1 identified by similarity to GB:AAC26497.1; match to protein family HMM PF04198 YP_002237473.1 identified by similarity to SP:O52720; match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002237474.1 identified by similarity to SP:P09099; match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_002237475.1 identified by similarity to SP:O52718; match to protein family HMM PF07690; match to protein family HMM TIGR00897 YP_002237476.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002237477.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002237478.1 identified by match to protein family HMM PF00496 YP_002237479.1 identified by match to protein family HMM PF00528 YP_002237480.1 identified by match to protein family HMM PF00528 YP_002237481.1 identified by match to protein family HMM PF00005 YP_002237482.1 identified by match to protein family HMM PF00005 YP_002237483.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role YP_002237484.1 identified by match to protein family HMM PF01136 YP_002237485.1 response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport YP_002237486.1 identified by similarity to SP:P30847; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002237487.1 identified by similarity to SP:P36554; match to protein family HMM PF07690 YP_002237488.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate YP_002237489.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate YP_002237490.1 Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate YP_002237491.1 identified by match to protein family HMM PF00375 YP_002237492.1 identified by Glimmer3 YP_002237493.1 identified by Glimmer3 YP_002237494.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002237495.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002237497.1 inducible, catalyzes the hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine YP_002237498.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002237499.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_002237500.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs YP_002237501.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741 YP_002237502.1 together with GalU subunit composes the UTP--glucose-1-phosphate uridylyltransferase an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose YP_002237503.1 identified by match to protein family HMM PF01569 YP_002237504.1 identified by Glimmer3 YP_002237505.1 identified by similarity to GB:AAD21561.1 YP_002237506.1 identified by similarity to SP:P0A932; match to protein family HMM PF02563 YP_002237507.1 identified by similarity to SP:P38134; match to protein family HMM PF02706; match to protein family HMM TIGR01007 YP_002237508.1 identified by similarity to GB:AAU42500.1 YP_002237509.1 identified by match to protein family HMM PF01943 YP_002237510.1 identified by match to protein family HMM PF00534 YP_002237512.1 identified by match to protein family HMM PF00534 YP_002237513.1 identified by Glimmer3 YP_002237514.1 identified by match to protein family HMM PF03808 YP_002237515.1 identified by similarity to GB:ABD90574.1 YP_002237516.1 identified by match to protein family HMM PF01757 YP_002237517.1 WcaJ; glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid YP_002237518.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002237519.1 identified by similarity to SP:P24174; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002237520.1 identified by similarity to SP:P24175; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002237521.1 identified by similarity to SP:P76373; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002237523.1 identified by similarity to GB:AAP68521.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002237524.1 identified by Glimmer3 YP_002237525.1 identified by Glimmer3 YP_002237526.1 identified by similarity to SP:P24174; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_002237527.1 identified by similarity to SP:P24175; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002237528.1 identified by match to protein family HMM PF01061 YP_002237529.1 identified by match to protein family HMM PF00005 YP_002237530.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002237531.1 identified by similarity to GB:BAA07750.1; match to protein family HMM PF00534 YP_002237532.1 identified by similarity to GB:BAA07751.1; match to protein family HMM PF00534 YP_002237533.1 identified by match to protein family HMM PF00534 YP_002237534.1 identified by similarity to SP:P06989; match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456 YP_002237535.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002237536.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002237537.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002237538.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_002237539.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002237540.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002237541.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_002237543.1 identified by match to protein family HMM PF01370 YP_002237544.1 Similar to Escherichia coli yeeY; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237545.1 Similar to Escherichia coli yeeF; identified by match to protein family HMM PF00324 YP_002237546.1 identified by Glimmer3 YP_002237547.1 identified by similarity to SP:P11068; match to protein family HMM PF04891 YP_002237548.1 identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290 YP_002237549.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01817 YP_002237550.1 identified by match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR02938 YP_002237551.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002237552.1 identified by match to protein family HMM PF00639; match to protein family HMM TIGR02933 YP_002237553.1 identified by match to protein family HMM PF04319 YP_002237555.1 identified by match to protein family HMM PF00682; match to protein family HMM TIGR02660 YP_002237556.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR03402 YP_002237557.1 identified by match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000 YP_002237558.1 identified by similarity to GB:AAA64718.1; match to protein family HMM PF02579 YP_002237559.1 functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe YP_002237560.1 identified by match to protein family HMM PF00148; match to protein family HMM TIGR01283 YP_002237561.1 identified by similarity to GB:CAA31670.1; match to protein family HMM PF02579 YP_002237562.1 identified by match to protein family HMM PF06988; match to protein family HMM TIGR02934 YP_002237563.1 identified by match to protein family HMM PF00148; match to protein family HMM TIGR01286 YP_002237564.1 identified by match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862 YP_002237565.1 identified by match to protein family HMM PF00142; match to protein family HMM TIGR01287 YP_002237566.1 identified by similarity to SP:P03833; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002237568.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484 YP_002237569.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_002237570.1 removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; penicillin-binding protein 6B; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains YP_002237571.1 identified by similarity to SP:P33012; match to protein family HMM PF06445 YP_002237572.1 Similar to Escherichia coli yeeA YP_002237573.1 identified by similarity to SP:Q8KR41; match to protein family HMM PF04363 YP_002237574.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_002237575.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002237576.1 identified by match to protein family HMM PF00670; match to protein family HMM PF02254; match to protein family HMM PF02826 YP_002237577.1 identified by match to protein family HMM PF04982 YP_002237578.1 identified by similarity to GB:CAC11007.1; match to protein family HMM PF01361 YP_002237579.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237580.1 identified by similarity to GB:AAZ64898.1 YP_002237581.1 identified by similarity to SP:P76350; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002237582.1 identified by similarity to GB:AAL44309.1 YP_002237583.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002237584.1 Similar to Escherichia coli yeaR; identified by similarity to SP:P64488; match to protein family HMM PF09313 YP_002237585.1 identified by similarity to GB:CAG74382.1 YP_002237586.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237588.1 identified by match to protein family HMM PF00561 YP_002237589.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_002237590.1 identified by similarity to GB:CAA09672.1 YP_002237591.1 identified by similarity to SP:P13975; match to protein family HMM PF04014 YP_002237592.1 identified by similarity to SP:P13976; match to protein family HMM PF02452 YP_002237593.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_002237594.1 identified by similarity to SP:P37589; similarity to SP:P37590 YP_002237595.1 identified by similarity to GB:ABF12254.1 YP_002237596.1 identified by similarity to PDB:1O8C_A; match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823 YP_002237597.1 identified by match to protein family HMM PF00440 YP_002237598.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_002237599.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136 YP_002237601.1 identified by match to protein family HMM PF02597 YP_002237602.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237 YP_002237603.1 identified by similarity to GB:ABG59081.1 YP_002237604.1 identified by similarity to SP:P77444; match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002237605.1 identified by Glimmer3 YP_002237606.1 identified by Glimmer3 YP_002237607.1 identified by match to protein family HMM PF00271 YP_002237608.1 identified by similarity to GB:AAP70295.1; match to protein family HMM PF08401 YP_002237609.1 identified by Glimmer3 YP_002237610.1 identified by Glimmer3 YP_002237611.1 identified by similarity to GB:ABJ00680.1 YP_002237612.1 identified by Glimmer3 YP_002237613.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002237614.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237615.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002237616.1 identified by match to protein family HMM PF00589 YP_002237617.1 identified by match to protein family HMM PF00589 YP_002237618.1 identified by match to protein family HMM PF01555 YP_002237619.1 identified by similarity to GB:CAB62410.1 YP_002237620.1 identified by match to protein family HMM TIGR02759 YP_002237621.1 identified by similarity to GB:CAG74516.1 YP_002237622.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788 YP_002237623.1 identified by match to protein family HMM PF03743 YP_002237624.1 identified by match to protein family HMM PF03524; match to protein family HMM TIGR02781 YP_002237625.1 identified by match to protein family HMM PF04335 YP_002237626.1 identified by similarity to GB:CAD58567.1 YP_002237627.1 identified by match to protein family HMM PF04610 YP_002237628.1 identified by similarity to GB:CAF25452.1 YP_002237630.1 identified by match to protein family HMM PF03135; match to protein family HMM PF05101 YP_002237631.1 identified by similarity to SP:Q45390 YP_002237632.1 identified by match to protein family HMM PF01464 YP_002237633.1 identified by similarity to GB:AAS58611.1 YP_002237634.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02419 YP_002237635.1 identified by similarity to GB:CAB46596.1 YP_002237636.1 identified by match to protein family HMM PF05930 YP_002237637.1 identified by similarity to GB:CAB46593.1 YP_002237638.1 identified by match to protein family HMM PF07690 YP_002237639.1 identified by similarity to GB:BAF32881.1 YP_002237640.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002237641.1 identified by Glimmer3 YP_002237642.1 identified by match to protein family HMM PF07973 YP_002237643.1 identified by match to protein family HMM PF00155 YP_002237644.1 identified by match to protein family HMM PF00221 YP_002237645.1 identified by similarity to GB:ABB06472.1 YP_002237646.1 identified by match to protein family HMM PF00589 YP_002237647.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237648.1 identified by similarity to SP:P23883; match to protein family HMM PF00171 YP_002237649.1 identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199 YP_002237650.1 identified by match to protein family HMM PF02133 YP_002237651.1 identified by similarity to GB:ABB06037.1 YP_002237652.1 identified by match to protein family HMM PF01042 YP_002237653.1 identified by similarity to GB:AAG08776.1; match to protein family HMM PF06267 YP_002237654.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002237655.1 identified by Glimmer3 YP_002237656.1 identified by match to protein family HMM PF00589 YP_002237657.1 Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation YP_002237658.1 LysR-type transcriptional regulator similar to CysB; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon; regulated by CysB YP_002237659.1 identified by match to protein family HMM PF03734 YP_002237660.1 identified by Glimmer3 YP_002237661.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237662.1 identified by match to protein family HMM PF01042 YP_002237663.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002237664.1 identified by match to protein family HMM PF00497 YP_002237665.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237666.1 identified by match to protein family HMM PF00005 YP_002237667.1 identified by match to protein family HMM PF03972 YP_002237668.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002237669.1 identified by match to protein family HMM PF00583 YP_002237670.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002237671.1 identified by similarity to SP:P50173; match to protein family HMM PF00465; match to protein family HMM PF01761 YP_002237672.1 identified by similarity to SP:P54989 YP_002237673.1 identified by similarity to SP:Q06191; match to protein family HMM PF00155 YP_002237674.1 identified by Glimmer3 YP_002237675.1 identified by Glimmer3 YP_002237676.1 identified by Glimmer3 YP_002237677.1 identified by Glimmer3 YP_002237678.1 identified by match to protein family HMM PF07978 YP_002237679.1 identified by similarity to SP:Q00538; match to protein family HMM PF07690 YP_002237680.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237681.1 identified by similarity to GB:AAP70295.1; match to protein family HMM PF08401 YP_002237682.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_002237683.1 identified by match to protein family HMM PF07690 YP_002237684.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; match to protein family HMM TIGR02430 YP_002237685.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237686.1 identified by match to protein family HMM PF00589 YP_002237687.1 identified by similarity to SP:P76346; match to protein family HMM PF06167 YP_002237688.1 identified by similarity to SP:P77747; match to protein family HMM PF00267 YP_002237689.1 identified by Glimmer3 YP_002237690.1 identified by Glimmer3 YP_002237691.1 identified by similarity to SP:P76334 YP_002237692.1 identified by match to protein family HMM PF01966 YP_002237693.1 identified by similarity to SP:P0AED9; match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002237694.1 identified by similarity to SP:P09184; match to protein family HMM PF03852 YP_002237695.1 Similar to Escherichia coli yedA; identified by similarity to SP:P0AA70; match to protein family HMM PF00892 YP_002237696.1 Similar to Escherichia coli yedI; identified by similarity to SP:P46125; match to protein family HMM PF05661 YP_002237697.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002237698.1 identified by Glimmer3 YP_002237699.1 identified by similarity to RF:NP_456545.1 YP_002237700.1 identified by similarity to SP:P0AEG8 YP_002237701.1 identified by match to protein family HMM PF00196 YP_002237702.1 identified by Glimmer3 YP_002237704.1 converts 1,4-alpha-D-glucans to maltodextrin YP_002237705.1 identified by similarity to SP:P0AEM9; match to protein family HMM PF00497 YP_002237706.1 catalyzes the formation of pyruvate from D-cysteine YP_002237707.1 Similar to Escherichia coli yecS; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002237708.1 Similar to Escherichia coli yecC; identified by match to protein family HMM PF00005 YP_002237709.1 regulates genes involved in cell division YP_002237710.1 identified by similarity to RF:NP_456512.1 YP_002237711.1 in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system YP_002237712.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002237713.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002237714.1 identified by similarity to GB:BAE74040.1; match to protein family HMM PF08795 YP_002237715.1 identified by match to protein family HMM PF00701 YP_002237716.1 Similar to Escherichia coli yecA; identified by match to protein family HMM PF02810; match to protein family HMM TIGR02292 YP_002237717.1 identified by similarity to SP:P0AAD4; match to protein family HMM PF01490; match to protein family HMM PF03222; match to protein family HMM TIGR00837 YP_002237718.1 identified by similarity to SP:P46887 YP_002237719.1 cytoplasmic iron storage protein YP_002237720.1 identified by match to protein family HMM PF02502 YP_002237721.1 identified by match to protein family HMM PF07690 YP_002237722.1 Similar to Escherichia coli yecJ; identified by similarity to SP:P0AD10 YP_002237723.1 identified by similarity to GB:CAC44457.1 YP_002237724.1 Similar to uncharacterized Escherichia coli ftnB; identified by match to protein family HMM PF00210 YP_002237725.1 identified by Glimmer3 YP_002237726.1 identified by Glimmer3 YP_002237727.1 identified by similarity to SP:P02924; match to protein family HMM PF00532 YP_002237728.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002237729.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_002237730.1 biosynthetic; catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate; expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature YP_002237731.1 identified by similarity to SP:P31677; match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_002237732.1 ppGpp-dependent; membrane-associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress YP_002237733.1 identified by similarity to GB:CAC44457.1; match to protein family HMM PF07690 YP_002237734.1 identified by match to protein family HMM PF07470 YP_002237735.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002237736.1 identified by similarity to GB:AAL20824.1; match to protein family HMM PF06185 YP_002237737.1 identified by similarity to SP:P67826; match to protein family HMM PF03932 YP_002237738.1 identified by match to protein family HMM PF08003; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00452 YP_002237739.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR00740 YP_002237740.1 identified by similarity to SP:P64515 YP_002237741.1 Similar to Escherichia coli yecE; identified by match to protein family HMM PF01904 YP_002237742.1 identified by match to protein family HMM PF00857 YP_002237743.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002237744.1 converts dATP to dAMP and pyrophosphate YP_002237745.1 Similar to Escherichia coli yebC; identified by similarity to SP:P0A8A1; match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002237746.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_002237747.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002237748.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002237749.1 involved in transport of zinc(II) with ZnuA and C YP_002237750.1 involved in transport of zinc(II) with ZnuA and C YP_002237751.1 involved in transport of zinc(II) with ZnuA and C YP_002237752.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551; match to protein family HMM PF04225; match to protein family HMM PF08525 YP_002237753.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA YP_002237754.1 identified by similarity to SP:P0AD01; match to protein family HMM PF00072 YP_002237755.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_002237756.1 identified by match to protein family HMM PF03547 YP_002237757.1 identified by match to protein family HMM PF03390 YP_002237758.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002237759.1 Represses the expression of the zwf, eda, glp and gap YP_002237760.1 identified by Glimmer3 YP_002237761.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002237762.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_002237763.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_002237764.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002237765.1 identified by similarity to SP:P0ACY9; match to protein family HMM PF07130 YP_002237766.1 identified by match to protein family HMM PF04391 YP_002237767.1 PtrB; oligopeptidase that cleaves peptide bonds following arginine and lysine residues YP_002237768.1 3'-5' exonuclease activity on single or double-strand DNA YP_002237769.1 identified by similarity to SP:P0ABS8; match to protein family HMM PF06440 YP_002237770.1 identified by match to protein family HMM PF04234 YP_002237771.1 identified by match to protein family HMM PF05425 YP_002237772.1 identified by similarity to SP:P64507 YP_002237774.1 identified by similarity to SP:P75829; match to protein family HMM PF04393 YP_002237775.1 Plays a key role in signaling protein misfolding via the cpxR/cpxA transducing system; modulates the phosphorylated status of many phosphoproteins YP_002237776.1 identified by match to protein family HMM PF07358 YP_002237777.1 identified by match to protein family HMM PF07351 YP_002237778.1 in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA YP_002237779.1 identified by match to protein family HMM PF02470 YP_002237780.1 Similar to Escherichia coli yebS; identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155 YP_002237781.1 identified by match to protein family HMM PF01590 YP_002237782.1 affects solute and DNA transport through an unknown mechanism YP_002237783.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_002237784.1 metalloprotease YP_002237785.1 Similar to Escherichia coli yebQ; identified by match to protein family HMM PF07690 YP_002237786.1 identified by similarity to SP:P76268; match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002237787.1 identified by similarity to SP:Q83T43 YP_002237789.1 identified by similarity to GB:AAV77005.1 YP_002237790.1 identified by Glimmer3 YP_002237791.1 identified by Glimmer3 YP_002237792.1 identified by similarity to SP:P0A9Y6; match to protein family HMM PF00313 YP_002237793.1 identified by similarity to SP:P0AD68; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002237794.1 identified by similarity to SP:P36999; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002237795.1 identified by match to protein family HMM PF02659 YP_002237796.1 identified by similarity to SP:Q8ZP01; match to protein family HMM PF06173 YP_002237797.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel YP_002237798.1 identified by similarity to SP:P69801; match to protein family HMM PF03609; match to protein family HMM TIGR00822 YP_002237799.1 identified by similarity to SP:P69797; match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824; match to protein family HMM TIGR00854 YP_002237800.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471; match to protein family HMM PF03741 YP_002237801.1 Similar to Escherichia coli yoaD; identified by match to protein family HMM PF00563 YP_002237802.1 identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_002237803.1 identified by match to protein family HMM PF00293 YP_002237804.1 identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553 YP_002237805.1 identified by similarity to SP:P67338; match to protein family HMM PF03701 YP_002237806.1 identified by match to protein family HMM PF01042 YP_002237807.1 identified by similarity to GB:AAP16916.1; match to protein family HMM TIGR01407 YP_002237808.1 identified by match to protein family HMM PF00814 YP_002237809.1 identified by similarity to SP:P37194; match to protein family HMM PF03843; match to protein family HMM TIGR00752 YP_002237810.1 Activates fatty acids by binding to coenzyme A YP_002237811.1 identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388 YP_002237812.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_002237813.1 ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums YP_002237814.1 blocks the formation of polar Z-ring septums YP_002237815.1 identified by match to protein family HMM PF05166 YP_002237816.1 identified by match to protein family HMM PF01557 YP_002237817.1 identified by similarity to SP:Q8FI28; match to protein family HMM PF03692 YP_002237818.1 identified by match to protein family HMM PF09313 YP_002237819.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_002237820.1 involved in regulation of intracellular pH under alkaline conditions YP_002237821.1 identified by Glimmer3 YP_002237822.1 Multifunctional regulator of fatty acid metabolism YP_002237823.1 identified by match to protein family HMM PF04293 YP_002237824.1 catalyzes the oxidative deamination of D-amino acids YP_002237825.1 identified by similarity to SP:P29012; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002237826.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_002237827.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_002237828.1 identified by similarity to SP:P76009; match to protein family HMM PF01464; match to protein family HMM PF06737 YP_002237829.1 identified by Glimmer3 YP_002237830.1 identified by Glimmer3 YP_002237831.1 identified by similarity to SP:Q01674; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; match to protein family HMM TIGR03304 YP_002237832.1 periplasmic; catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell YP_002237833.1 identified by Glimmer3 YP_002237834.1 identified by similarity to GB:CAD45188.1 YP_002237835.1 identified by similarity to GB:CAG73298.1; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_002237836.1 identified by similarity to GB:CAG73297.1; match to protein family HMM PF04168 YP_002237837.1 identified by match to protein family HMM PF01841; match to protein family HMM PF08379 YP_002237838.1 identified by similarity to GB:CAG73295.1 YP_002237839.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002237840.1 identified by match to protein family HMM PF00294 YP_002237841.1 identified by match to protein family HMM PF00528 YP_002237842.1 identified by match to protein family HMM PF00528 YP_002237843.1 identified by match to protein family HMM PF01547 YP_002237844.1 identified by match to protein family HMM PF00480 YP_002237845.1 identified by match to protein family HMM PF00487 YP_002237846.1 identified by similarity to GB:ABA76083.1 YP_002237847.1 identified by match to protein family HMM PF00296 YP_002237848.1 identified by match to protein family HMM PF04069 YP_002237849.1 identified by match to protein family HMM PF00528 YP_002237850.1 identified by match to protein family HMM PF00528 YP_002237851.1 identified by match to protein family HMM PF00005 YP_002237852.1 regulates the tdcABCDEFG operon which is involved in amino acid degradation YP_002237853.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic YP_002237854.1 involved in the import of threonine and serine in combination with the import of a proton YP_002237855.1 catalyzes the formation of propanoyl phosphate from propanoate and ATP; TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism YP_002237856.1 identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002237857.1 identified by match to protein family HMM PF01094 YP_002237858.1 identified by match to protein family HMM PF02653 YP_002237859.1 identified by match to protein family HMM PF02653 YP_002237860.1 identified by match to protein family HMM PF00005 YP_002237861.1 identified by match to protein family HMM PF00005 YP_002237862.1 Similar to Escherichia coli yjiE; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237863.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002237864.1 identified by match to protein family HMM PF00583 YP_002237865.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237866.1 identified by similarity to SP:P16482; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002237867.1 identified by match to protein family HMM PF01547 YP_002237868.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237869.1 identified by match to protein family HMM PF00313 YP_002237870.1 identified by match to protein family HMM PF00849 YP_002237871.1 identified by similarity to SP:P51024 YP_002237872.1 identified by similarity to SP:P31460; match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002237873.1 identified by match to protein family HMM PF05035 YP_002237874.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_002237875.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002237876.1 identified by match to protein family HMM PF07690 YP_002237877.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002237878.1 identified by similarity to GB:AAL01561.1 YP_002237879.1 identified by Glimmer3 YP_002237880.1 identified by similarity to RF:NP_992723.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353 YP_002237881.1 identified by similarity to RF:NP_994745.1; match to protein family HMM TIGR03349 YP_002237882.1 identified by match to protein family HMM PF00691 YP_002237883.1 identified by Glimmer3 YP_002237884.1 identified by Glimmer3 YP_002237885.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002237886.1 identified by match to protein family HMM PF01476 YP_002237887.1 identified by match to protein family HMM PF01609 YP_002237888.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01551 YP_002237889.1 identified by Glimmer3 YP_002237890.1 identified by Glimmer3 YP_002237891.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_002237892.1 identified by similarity to GB:ABJ02259.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359 YP_002237893.1 identified by match to protein family HMM PF06996; match to protein family HMM TIGR03347 YP_002237894.1 identified by match to protein family HMM TIGR03352 YP_002237895.1 identified by match to protein family HMM PF04965; match to protein family HMM TIGR03357 YP_002237896.1 identified by match to protein family HMM PF06812 YP_002237897.1 identified by similarity to SP:P49308; match to protein family HMM PF00532 YP_002237898.1 identified by Glimmer3 YP_002237899.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002237900.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002237901.1 YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function YP_002237902.1 identified by similarity to SP:P10488; match to protein family HMM PF00376; match to protein family HMM PF05583; match to protein family HMM PF09278 YP_002237903.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_002237904.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002237905.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002237906.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_002237907.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002237908.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002237909.1 HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB YP_002237910.1 identified by match to protein family HMM PF04247 YP_002237911.1 identified by similarity to SP:P0AGM5 YP_002237912.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002237913.1 identified by similarity to SP:P31801; match to protein family HMM PF01699; match to protein family HMM TIGR00846 YP_002237914.1 in Escherichia coli this protein ly regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA; has weak affinity for calcium and magnesium ions YP_002237915.1 identified by similarity to SP:P39163; match to protein family HMM PF04752 YP_002237916.1 identified by Glimmer3 YP_002237917.1 identified by similarity to GB:CAG75337.1 YP_002237918.1 identified by Glimmer3 YP_002237919.1 identified by match to protein family HMM PF02635 YP_002237920.1 identified by similarity to SP:Q48468; match to protein family HMM PF03861; match to protein family HMM PF08376 YP_002237921.1 identified by Glimmer3 YP_002237922.1 identified by similarity to GB:AAB86900.1; match to protein family HMM TIGR01409 YP_002237923.1 identified by similarity to GB:AAB86903.1; match to protein family HMM PF00528; match to protein family HMM TIGR01183 YP_002237924.1 identified by similarity to SP:P39459; match to protein family HMM PF00005; match to protein family HMM TIGR01184 YP_002237925.1 identified by similarity to SP:Q06458; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; match to protein family HMM TIGR02378 YP_002237926.1 identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_002237927.1 identified by Glimmer3 YP_002237928.1 identified by similarity to SP:P11922 YP_002237929.1 two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase YP_002237930.1 identified by similarity to SP:P0AFA2; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002237931.1 identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_002237932.1 identified by Glimmer3 YP_002237933.1 identified by similarity to SP:P09152; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_002237934.1 identified by similarity to SP:P11349; match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_002237935.1 identified by similarity to SP:P0AF26; match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_002237936.1 identified by similarity to SP:P11350; match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_002237937.1 identified by match to protein family HMM PF00892; match to protein family HMM PF08449 YP_002237938.1 identified by match to protein family HMM PF01037 YP_002237939.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002237940.1 identified by match to protein family HMM PF02810 YP_002237941.1 identified by match to protein family HMM PF01734 YP_002237942.1 identified by match to protein family HMM PF00072 YP_002237943.1 together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose YP_002237944.1 identified by similarity to SP:P18955; match to protein family HMM PF00816 YP_002237945.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002237946.1 identified by similarity to SP:P0A9Q7; match to protein family HMM PF00171; match to protein family HMM PF00465 YP_002237947.1 identified by Glimmer3 YP_002237948.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_002237949.1 identified by Glimmer3 YP_002237950.1 identified by similarity to SP:P23843; match to protein family HMM PF00496 YP_002237951.1 identified by similarity to SP:P08005; match to protein family HMM PF00528 YP_002237952.1 identified by similarity to SP:P08006; match to protein family HMM PF00528 YP_002237953.1 identified by similarity to SP:P04285; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002237954.1 identified by similarity to SP:P08007; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002237955.1 identified by match to protein family HMM PF00520; match to protein family HMM PF07885 YP_002237956.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein YP_002237957.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002237958.1 identified by similarity to GB:CAG68855.1; match to protein family HMM PF04264 YP_002237959.1 identified by similarity to SP:Q59086; match to protein family HMM PF01011; match to protein family HMM TIGR03074 YP_002237960.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_002237961.1 identified by Glimmer3 YP_002237962.1 identified by Glimmer3 YP_002237963.1 identified by Glimmer3 YP_002237965.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002237966.1 identified by similarity to GB:AAZ18061.1; match to protein family HMM PF03703 YP_002237967.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002237968.1 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins YP_002237969.1 identified by match to protein family HMM PF01636; match to protein family HMM PF03881 YP_002237970.1 identified by similarity to RF:NP_456186.1 YP_002237971.1 identified by Glimmer3 YP_002237972.1 Similar to Escherichia coli ydiY; identified by similarity to SP:P76206; match to protein family HMM PF04338 YP_002237973.1 identified by similarity to SP:P0AAX5 YP_002237974.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002237975.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_002237976.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002237977.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002237978.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002237979.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002237980.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002237981.1 identified by match to protein family HMM PF01042 YP_002237982.1 identified by match to protein family HMM PF01266 YP_002237983.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002237984.1 identified by match to protein family HMM PF03600 YP_002237985.1 with BtuD and BtuF transports vitamin B12 into the cell YP_002237986.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_002237987.1 similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane YP_002237988.1 ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell YP_002237989.1 identified by match to protein family HMM PF00877 YP_002237990.1 identified by similarity to SP:P77649; match to protein family HMM PF02696 YP_002237991.1 identified by similarity to GB:CAD61861.1 YP_002237992.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_002237993.1 identified by similarity to SP:Q8ZDY4; match to protein family HMM PF03618 YP_002237994.1 identified by Glimmer3 YP_002237995.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002237996.1 YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function YP_002237997.1 identified by Glimmer3 YP_002237998.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002237999.1 identified by similarity to SP:P77781; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002238000.1 identified by match to protein family HMM PF04226 YP_002238001.1 identified by Glimmer3 YP_002238002.1 identified by Glimmer3 YP_002238003.1 identified by similarity to GB:CAG76024.1; match to protein family HMM PF08908 YP_002238004.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_002238005.1 identified by match to protein family HMM PF07690 YP_002238006.1 identified by match to protein family HMM PF00005 YP_002238007.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002238008.1 identified by match to protein family HMM PF01497 YP_002238009.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238010.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321 YP_002238011.1 identified by match to protein family HMM PF00440 YP_002238012.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002238013.1 identified by match to protein family HMM PF00873 YP_002238014.1 identified by similarity to SP:P33232; match to protein family HMM PF01070 YP_002238015.1 identified by Glimmer3 YP_002238016.1 functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein YP_002238017.1 with SufCD activates cysteine desulfurase SufS YP_002238018.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE YP_002238019.1 with SufBC activates cysteine desulfurase SufS YP_002238020.1 catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine YP_002238021.1 Acts with SufS to catalyze the formation of L-alanine from L-cysteine YP_002238022.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734 YP_002238023.1 identified by similarity to SP:P69776; match to protein family HMM PF04728 YP_002238024.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002238025.1 identified by Glimmer3 YP_002238026.1 identified by Glimmer3 YP_002238027.1 identified by similarity to SP:P0ACX8 YP_002238028.1 identified by match to protein family HMM PF00440 YP_002238029.1 identified by match to protein family HMM PF01261 YP_002238030.1 identified by match to protein family HMM PF07690 YP_002238031.1 identified by match to protein family HMM PF00899; match to protein family HMM PF08501 YP_002238032.1 identified by match to protein family HMM TIGR01256 YP_002238033.1 identified by match to protein family HMM PF00005 YP_002238034.1 identified by match to protein family HMM PF01032 YP_002238035.1 identified by match to protein family HMM PF01497 YP_002238036.1 activator of 3-phenylpropionic acid catabolism YP_002238037.1 catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate YP_002238038.1 catalyzes the cleavage of 3-(2,3-dihydroxyphenyl) propionate into 2-hydroxy-6-oxonona-2,4-diene-1,9-dioate; part of the 3-phenylpropionic acid degradation pathway; member of the protocatechuate 4,5-dioxygenase family YP_002238039.1 identified by similarity to SP:P77044; match to protein family HMM PF00561 YP_002238040.1 catalyzes the formation of 2-keto-4-hydroxypentanoic acid from 2-hydroxypentadienoic acid YP_002238041.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_002238042.1 identified by similarity to SP:P51020; match to protein family HMM PF00682; match to protein family HMM PF07836; match to protein family HMM TIGR03217 YP_002238043.1 identified by similarity to SP:P77589; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238044.1 identified by similarity to GB:AAY94409.1; match to protein family HMM PF02578 YP_002238045.1 identified by similarity to PDB:1YT8_A; match to protein family HMM PF00581 YP_002238046.1 identified by similarity to PDB:2GM6_A; match to protein family HMM PF05995 YP_002238047.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238048.1 identified by match to protein family HMM PF00296 YP_002238049.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_002238050.1 identified by match to protein family HMM TIGR01728 YP_002238051.1 identified by match to protein family HMM TIGR01409 YP_002238052.1 identified by match to protein family HMM PF00528 YP_002238053.1 identified by match to protein family HMM PF00005 YP_002238054.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_002238055.1 identified by Glimmer3 YP_002238056.1 identified by similarity to GB:ABI52623.1; match to protein family HMM PF00005 YP_002238057.1 identified by similarity to GB:ABI52624.1; match to protein family HMM PF01032 YP_002238058.1 identified by similarity to GB:ABI52625.1; match to protein family HMM PF01032 YP_002238059.1 identified by similarity to GB:ABI52626.1; match to protein family HMM PF01497 YP_002238060.1 identified by match to protein family HMM PF01380 YP_002238061.1 identified by match to protein family HMM PF00497 YP_002238062.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238063.1 identified by similarity to SP:P27675; match to protein family HMM PF00005 YP_002238064.1 identified by match to protein family HMM PF01042 YP_002238065.1 identified by match to protein family HMM PF07690 YP_002238066.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002238067.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238068.1 identified by match to protein family HMM PF01292 YP_002238069.1 identified by match to protein family HMM PF00199 YP_002238071.1 identified by match to protein family HMM PF00440 YP_002238072.1 identified by similarity to GB:AAV94227.1 YP_002238073.1 identified by match to protein family HMM PF00903 YP_002238074.1 identified by match to protein family HMM PF07690 YP_002238075.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002238076.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002238077.1 identified by similarity to PDB:2G8Y_A; match to protein family HMM PF02615 YP_002238078.1 identified by Glimmer3 YP_002238079.1 identified by match to protein family HMM PF01547 YP_002238080.1 identified by match to protein family HMM PF00528 YP_002238081.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002238082.1 identified by Glimmer3 YP_002238083.1 identified by similarity to GB:CAE51727.1 YP_002238084.1 identified by match to protein family HMM PF00903 YP_002238085.1 identified by similarity to SP:O34213 YP_002238086.1 identified by similarity to SP:O34214; match to protein family HMM PF00732 YP_002238087.1 identified by similarity to SP:O34215; match to protein family HMM PF00034 YP_002238088.1 ATP-binding protein; required for proper cytochrome c maturation YP_002238089.1 identified by match to protein family HMM PF03379; match to protein family HMM TIGR01190 YP_002238090.1 identified by similarity to SP:P0ABM1; match to protein family HMM PF01578; match to protein family HMM TIGR01191 YP_002238091.1 identified by match to protein family HMM PF04995; match to protein family HMM TIGR03141 YP_002238092.1 identified by match to protein family HMM PF03100 YP_002238093.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; match to protein family HMM TIGR00353 YP_002238094.1 identified by similarity to SP:P0AA86; match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR00385 YP_002238095.1 identified by match to protein family HMM TIGR03142 YP_002238096.1 identified by match to protein family HMM PF00583 YP_002238097.1 identified by Glimmer3 YP_002238098.1 identified by Glimmer3 YP_002238099.1 identified by Glimmer3 YP_002238100.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002238101.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238102.1 identified by match to protein family HMM PF00296 YP_002238103.1 identified by similarity to SP:Q48436; match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR02415 YP_002238104.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_002238105.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002238106.1 identified by similarity to SP:P52666; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238107.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_002238108.1 identified by match to protein family HMM PF03600 YP_002238109.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM TIGR02279 YP_002238110.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_002238111.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002238112.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002238113.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238114.1 identified by Glimmer3 YP_002238115.1 identified by Glimmer3 YP_002238117.1 identified by match to protein family HMM PF07690 YP_002238118.1 identified by match to protein family HMM PF01638 YP_002238119.1 identified by match to protein family HMM PF01361 YP_002238120.1 identified by match to protein family HMM PF07690 YP_002238121.1 identified by similarity to SP:P17552 YP_002238122.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_002238123.1 identified by Glimmer3 YP_002238124.1 identified by Glimmer3 YP_002238125.1 identified by match to protein family HMM PF01565 YP_002238126.1 identified by match to protein family HMM PF00528 YP_002238127.1 identified by match to protein family HMM PF00005 YP_002238128.1 identified by match to protein family HMM PF09084 YP_002238129.1 identified by match to protein family HMM PF02633 YP_002238130.1 identified by match to protein family HMM PF01042 YP_002238131.1 identified by similarity to SP:P25524 YP_002238132.1 identified by similarity to SP:O54037; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002238133.1 identified by Glimmer3 YP_002238134.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238135.1 identified by match to protein family HMM PF09084 YP_002238136.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002238137.1 identified by match to protein family HMM PF03171 YP_002238138.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238139.1 identified by match to protein family HMM PF00202 YP_002238140.1 identified by match to protein family HMM PF01636 YP_002238141.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002238142.1 identified by match to protein family HMM PF00324 YP_002238143.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238144.1 identified by match to protein family HMM PF07690 YP_002238145.1 identified by match to protein family HMM PF00196 YP_002238146.1 identified by match to protein family HMM PF05163 YP_002238147.1 identified by similarity to GB:AAL22620.1 YP_002238148.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002238149.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002238150.1 identified by similarity to SP:P42063; match to protein family HMM PF00528 YP_002238151.1 identified by match to protein family HMM PF00528 YP_002238152.1 identified by similarity to SP:P42061; match to protein family HMM PF00496 YP_002238153.1 identified by match to protein family HMM PF00005 YP_002238154.1 identified by match to protein family HMM PF03180 YP_002238155.1 identified by match to protein family HMM PF00528 YP_002238156.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_002238157.1 identified by match to protein family HMM PF00302 YP_002238158.1 identified by match to protein family HMM PF00903 YP_002238159.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238160.1 identified by match to protein family HMM PF01810 YP_002238161.1 identified by match to protein family HMM PF00484 YP_002238162.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002238163.1 identified by similarity to GB:CAD33779.1; match to protein family HMM PF07338 YP_002238164.1 identified by Glimmer3 YP_002238165.1 identified by similarity to GB:CAD83456.1 YP_002238166.1 identified by Glimmer3 YP_002238167.1 identified by match to protein family HMM PF00753 YP_002238168.1 identified by similarity to GB:ABK12786.1 YP_002238169.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238170.1 identified by match to protein family HMM PF00165 YP_002238171.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002238172.1 identified by Glimmer3 YP_002238173.1 identified by Glimmer3 YP_002238174.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002238175.1 identified by Glimmer3 YP_002238176.1 identified by match to protein family HMM PF06392 YP_002238177.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_002238178.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002238179.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_002238180.1 uncharacterized member of the major facilitator superfamily (MFS) YP_002238181.1 Similar to Escherichia coli ydhB; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238182.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers YP_002238183.1 Similar to Escherichia coli ydhP; identified by match to protein family HMM PF07690 YP_002238184.1 SodB; iron binding; present under aerobic and anaerobic conditions; destroys free radicals YP_002238185.1 identified by match to protein family HMM PF00165 YP_002238186.1 identified by match to protein family HMM PF00877 YP_002238187.1 identified by similarity to SP:P0AC69; match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_002238188.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_002238189.1 Ni-dependent; catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione YP_002238190.1 FMN-linked; catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide YP_002238191.1 Similar to Escherichia coli ydhM; identified by match to protein family HMM PF00440 YP_002238192.1 identified by match to protein family HMM PF06945 YP_002238193.1 identified by similarity to SP:P76187; match to protein family HMM PF00248 YP_002238194.1 SodC; copper and zinc binding; converts superoxide radicals to hydrogen peroxide and water YP_002238195.1 Similar to Escherichia coli ydhK; identified by match to protein family HMM PF04632 YP_002238196.1 identified by match to protein family HMM PF00529 YP_002238197.1 identified by match to protein family HMM PF07869 YP_002238198.1 Transcription regulator that can both activate or repress expression YP_002238199.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002238200.1 identified by similarity to SP:P0A1X0; match to protein family HMM PF05433 YP_002238201.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002238202.1 MliC; membrane-bound lysozyme inhibitor of c-type lysozyme YP_002238203.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_002238204.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002238205.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_002238206.1 identified by similarity to SP:P0A9D2; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002238207.1 mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation YP_002238208.1 identified by Glimmer3 YP_002238209.1 DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines YP_002238210.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002238211.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen YP_002238212.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_002238213.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_002238214.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_002238215.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943 YP_002238217.1 YdgT; in E. coli, when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC; seems to play a role in optimizing the activity of oriC; non-essential; Hha protein paralog; in an hha mutant background, cnu is overexpressed and can compensate hha-induced phenotypes YP_002238218.1 identified by similarity to GB:AAB49339.1; match to protein family HMM PF00232; match to protein family HMM TIGR03356 YP_002238219.1 identified by similarity to SP:P56976 YP_002238220.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002238221.1 identified by similarity to SP:P22333; match to protein family HMM PF00962; match to protein family HMM TIGR01430 YP_002238222.1 Similarity to Escherichia coli ygaY; identified by match to protein family HMM PF07690 YP_002238223.1 identified by match to protein family HMM PF01638 YP_002238224.1 identified by Glimmer3 YP_002238225.1 identified by similarity to RF:XP_804354.1 YP_002238226.1 B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm YP_002238227.1 identified by similarity to SP:P15753; match to protein family HMM PF02583 YP_002238228.1 Synonym: frmA; identified by similarity to SP:P25437; match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818 YP_002238229.1 identified by similarity to SP:Q59086; match to protein family HMM PF01011; match to protein family HMM TIGR03074 YP_002238230.1 identified by similarity to SP:P15750; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238231.1 identified by similarity to SP:P15749; match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_002238232.1 identified by similarity to SP:P15748; match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_002238233.1 identified by similarity to SP:P15747; match to protein family HMM PF07063 YP_002238234.1 identified by similarity to SP:P37967; match to protein family HMM PF00135 YP_002238235.1 identified by similarity to GB:AAD34026.1; match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002238236.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_002238237.1 identified by similarity to SP:P13857; match to protein family HMM PF00583 YP_002238238.1 identified by similarity to SP:P15644 YP_002238239.1 identified by similarity to SP:P25396; match to protein family HMM PF03595; match to protein family HMM TIGR00816 YP_002238240.1 with TehA confers resistance to tellurite YP_002238241.1 identified by Glimmer3 YP_002238243.1 identified by match to protein family HMM PF00892 YP_002238244.1 identified by match to protein family HMM PF00165 YP_002238245.1 Similar to Escherichia coli ydcO; identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_002238246.1 Similar to Escherichia coli ydcN; identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002238247.1 identified by Glimmer3 YP_002238248.1 identified by match to protein family HMM PF01136 YP_002238250.1 identified by similarity to RF:XP_001213543.1 YP_002238251.1 identified by similarity to GB:AAZ63455.1 YP_002238252.1 identified by similarity to GB:CAA71556.1; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002238253.1 identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654 YP_002238254.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002238255.1 Similar to Escherichia coli ydcS; identified by match to protein family HMM PF01547 YP_002238256.1 Similar to Escherichia coli ydcT; identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002238257.1 Similar to Escherichia coli ydcU; identified by match to protein family HMM PF00528 YP_002238258.1 Similar to Escherichia coli ydcV; identified by match to protein family HMM PF00528 YP_002238259.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_002238260.1 identified by Glimmer3 YP_002238261.1 identified by Glimmer3 YP_002238262.1 Similar to Escherichia coli ydcX; identified by similarity to SP:P64453 YP_002238263.1 identified by match to protein family HMM PF00561 YP_002238264.1 identified by similarity to GB:CAA72286.1; match to protein family HMM PF00171 YP_002238265.1 identified by similarity to SP:P23847; match to protein family HMM PF00496 YP_002238267.1 Similar to Escherichia coli ydcZ; identified by match to protein family HMM PF04657 YP_002238268.1 Similar to Escherichia coli yncA; identified by match to protein family HMM PF00583 YP_002238269.1 identified by match to protein family HMM PF01381 YP_002238270.1 identified by match to protein family HMM PF00107 YP_002238271.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific YP_002238272.1 identified by Glimmer3 YP_002238273.1 identified by match to protein family HMM PF04175; match to protein family HMM TIGR00743 YP_002238274.1 Similar to Escherichia coli yncD; identified by similarity to SP:P76115; match to protein family HMM PF00593; match to protein family HMM PF07715 YP_002238276.1 identified by match to protein family HMM PF06004 YP_002238277.1 identified by similarity to SP:P40812; match to protein family HMM PF00324 YP_002238278.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238279.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652 YP_002238280.1 identified by match to protein family HMM PF05175; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002238281.1 identified by similarity to GB:CAG75666.1 YP_002238282.1 identified by match to protein family HMM PF00296 YP_002238283.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002238284.1 identified by similarity to PDB:1YW1_A YP_002238285.1 identified by match to protein family HMM PF00497 YP_002238286.1 identified by match to protein family HMM PF00583 YP_002238287.1 permease and atpase components exist as one orf in other organisms, but appear to be separate orfs here; identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238288.1 permease and atpase components exist as one orf in other organisms, but appear to be separate orfs here; identified by match to protein family HMM PF00005 YP_002238289.1 identified by match to protein family HMM PF00497 YP_002238290.1 identified by match to protein family HMM PF07690 YP_002238291.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002238292.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002238293.1 identified by match to protein family HMM PF02798 YP_002238294.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002238295.1 identified by match to protein family HMM PF02264 YP_002238296.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_002238297.1 identified by match to protein family HMM PF05592 YP_002238298.1 identified by similarity to SP:P09377; match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_002238299.1 Similar to Escherichia coli yddH; identified by match to protein family HMM PF01613 YP_002238300.1 identified by match to protein family HMM PF00005 YP_002238301.1 identified by match to protein family HMM PF01547 YP_002238302.1 identified by match to protein family HMM PF00528 YP_002238303.1 identified by similarity to SP:Q00267; match to protein family HMM PF00797 YP_002238304.1 identified by similarity to SP:P0AF32; match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_002238305.1 identified by similarity to SP:P19317; match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_002238306.1 identified by similarity to SP:P19318; match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_002238307.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_002238308.1 identified by similarity to SP:P37758; match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_002238309.1 identified by match to protein family HMM PF00440 YP_002238310.1 identified by similarity to SP:P37594; match to protein family HMM PF07690 YP_002238311.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002238312.1 identified by similarity to SP:P08310; match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534 YP_002238313.1 identified by match to protein family HMM PF02426; match to protein family HMM TIGR03221 YP_002238314.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439 YP_002238315.1 identified by similarity to GB:BAE46757.1; match to protein family HMM PF00355; match to protein family HMM PF00848 YP_002238316.1 identified by similarity to GB:BAB21464.1; match to protein family HMM PF00866; match to protein family HMM TIGR03232 YP_002238317.1 identified by similarity to GB:BAB21465.1; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002238318.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_002238319.1 Similar to Escherichia coli yddG YP_002238320.1 Selenoprotein. identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_002238321.1 identified by similarity to SP:P0AAJ3; match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582 YP_002238322.1 nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase YP_002238323.1 identified by similarity to GB:CAE14448.1 YP_002238324.1 identified by Glimmer3 YP_002238325.1 identified by match to protein family HMM PF03976 YP_002238326.1 identified by match to protein family HMM PF00903 YP_002238327.1 member of the major facilitator superfamily (MFS) of transporters; unknown function; may be associated with transport or processing of arabinose polymers YP_002238328.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; match to protein family HMM TIGR01926 YP_002238329.1 identified by match to protein family HMM PF00296 YP_002238330.1 identified by match to protein family HMM PF00005 YP_002238331.1 identified by match to protein family HMM PF00528 YP_002238332.1 identified by match to protein family HMM PF00528 YP_002238333.1 identified by match to protein family HMM PF00496 YP_002238334.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002238335.1 identified by similarity to SP:P0A7A9; match to protein family HMM PF00719 YP_002238336.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01047 YP_002238337.1 identified by match to protein family HMM PF00005 YP_002238338.1 identified by Glimmer3 YP_002238339.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_002238340.1 identified by Glimmer3 YP_002238341.1 protein D; stationary-phase-induced ribosome-associated; in Escherichia coli this protein becomes associated with the ribosome; expression increases during stationary phase YP_002238342.1 identified by match to protein family HMM PF00753 YP_002238343.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238344.1 identified by similarity to GB:CAG74486.1 YP_002238345.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002238346.1 identified by Glimmer3 YP_002238347.1 identified by similarity to RF:NP_455967.1 YP_002238348.1 identified by Glimmer3 YP_002238349.1 identified by similarity to GB:CAG89617.1 YP_002238350.1 Similar to Escherichia coli yciE; identified by similarity to SP:P21363; match to protein family HMM PF05974 YP_002238351.1 identified by match to protein family HMM PF00128 YP_002238352.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002238353.1 identified by similarity to GB:AAY35827.1 YP_002238354.1 identified by similarity to GB:AAZ55686.1 YP_002238355.1 identified by Glimmer3 YP_002238356.1 Similar to Escherichia coli ydeI; identified by similarity to SP:P31130; match to protein family HMM PF04076; match to protein family HMM TIGR00156 YP_002238357.1 identified by Glimmer3 YP_002238358.1 identified by similarity to SP:P0C0L2; match to protein family HMM PF02566 YP_002238359.1 identified by similarity to GB:AAN70276.1 YP_002238361.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002238362.1 Similar to Escherichia coli yneE; identified by similarity to SP:P76146; match to protein family HMM PF05249 YP_002238363.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701 YP_002238364.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238365.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238366.1 identified by match to protein family HMM PF03969 YP_002238367.1 identified by similarity to SP:P13029; match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_002238368.1 identified by match to protein family HMM PF01810 YP_002238369.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423 YP_002238370.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002238371.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; match to protein family HMM TIGR02110 YP_002238372.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02109 YP_002238373.1 identified by match to protein family HMM PF05402 YP_002238374.1 Required in the synthesis of PPQ, but its exact function is unknown YP_002238375.1 possibly involved in transport of pyrroloquinoline quinone transport YP_002238376.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme YP_002238377.1 identified by match to protein family HMM PF01244 YP_002238378.1 identified by match to protein family HMM PF00561 YP_002238379.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002238380.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002238381.1 identified by match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534 YP_002238382.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238383.1 identified by similarity to SP:Q43908; match to protein family HMM PF00282; match to protein family HMM PF01212 YP_002238384.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_002238385.1 identified by match to protein family HMM PF03180; match to protein family HMM PF09084 YP_002238386.1 identified by match to protein family HMM PF00528 YP_002238387.1 identified by match to protein family HMM PF00005 YP_002238388.1 identified by match to protein family HMM PF03070 YP_002238389.1 identified by Glimmer3 YP_002238390.1 identified by Glimmer3 YP_002238391.1 identified by similarity to GB:AAW86858.1 YP_002238393.1 identified by similarity to GB:AAT73775.1 YP_002238394.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002238395.1 identified by match to protein family HMM PF01261 YP_002238396.1 identified by match to protein family HMM PF00356 YP_002238397.1 identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002238399.1 identified by similarity to SP:P76641; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02967; match to protein family HMM TIGR03179 YP_002238400.1 identified by match to protein family HMM PF02133 YP_002238401.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002238402.1 identified by similarity to SP:Q00924; match to protein family HMM PF01177 YP_002238403.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR03212 YP_002238404.1 identified by match to protein family HMM PF01925 YP_002238405.1 identified by match to protein family HMM PF02311 YP_002238406.1 identified by Glimmer3 YP_002238407.1 identified by similarity to GB:CAE51652.1 YP_002238408.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_002238409.1 identified by match to protein family HMM PF02311 YP_002238410.1 identified by Glimmer3 YP_002238411.1 identified by match to protein family HMM PF06171 YP_002238412.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238413.1 identified by similarity to GB:AAZ17923.1; match to protein family HMM PF04657 YP_002238414.1 identified by match to protein family HMM PF04657 YP_002238415.1 identified by Glimmer3 YP_002238416.1 identified by similarity to SP:P26218; match to protein family HMM PF02264 YP_002238417.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_002238418.1 identified by similarity to SP:P40740; match to protein family HMM PF00232 YP_002238419.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002238420.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238421.1 identified by similarity to GB:AAC44159.1; match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002238422.1 identified by similarity to GB:AAW85099.1 YP_002238423.1 identified by Glimmer3 YP_002238424.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150 YP_002238425.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002238426.1 identified by match to protein family HMM PF00529 YP_002238427.1 identified by match to protein family HMM PF01638 YP_002238428.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002238429.1 identified by match to protein family HMM PF00583 YP_002238430.1 identified by similarity to GB:CAG76398.1 YP_002238431.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002238432.1 identified by similarity to GB:CAG76396.1 YP_002238433.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_002238434.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002238435.1 identified by match to protein family HMM PF00497 YP_002238436.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238437.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238438.1 identified by match to protein family HMM PF00005 YP_002238439.1 identified by match to protein family HMM PF00266 YP_002238440.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_002238441.1 identified by match to protein family HMM PF03060 YP_002238442.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238444.1 identified by match to protein family HMM PF00724 YP_002238445.1 identified by match to protein family HMM PF01266 YP_002238446.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238447.1 identified by match to protein family HMM PF00892 YP_002238448.1 identified by similarity to GB:ABD82742.1 YP_002238449.1 identified by match to protein family HMM PF00440 YP_002238450.1 identified by match to protein family HMM PF00583 YP_002238451.1 identified by match to protein family HMM PF07690 YP_002238452.1 identified by match to protein family HMM TIGR03427 YP_002238453.1 identified by match to protein family HMM PF00528 YP_002238454.1 identified by match to protein family HMM PF00005 YP_002238455.1 identified by similarity to GB:CAG74818.1; match to protein family HMM TIGR03425 YP_002238456.1 identified by match to protein family HMM TIGR03424 YP_002238457.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00724; match to protein family HMM TIGR02712 YP_002238458.1 catalyzes the hydrolysis of allophanate YP_002238459.1 identified by Glimmer3 YP_002238460.1 identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002238461.1 identified by match to protein family HMM PF01810 YP_002238462.1 identified by match to protein family HMM PF00196 YP_002238463.1 identified by similarity to SP:P08190; match to protein family HMM PF00419 YP_002238464.1 identified by match to protein family HMM PF00419 YP_002238465.1 identified by similarity to SP:P43662; match to protein family HMM PF00577 YP_002238466.1 identified by similarity to SP:P43661; match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002238467.1 identified by match to protein family HMM PF00419 YP_002238468.1 identified by match to protein family HMM PF00027 YP_002238469.1 identified by similarity to GB:AAX68347.1 YP_002238470.1 identified by match to protein family HMM PF07690 YP_002238471.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238472.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238473.1 identified by similarity to GB:AAO47340.1; match to protein family HMM PF00753 YP_002238474.1 identified by Glimmer3 YP_002238475.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910 YP_002238476.1 identified by similarity to GB:AAY35830.1; match to protein family HMM PF07090 YP_002238477.1 identified by match to protein family HMM PF02126 YP_002238478.1 identified by match to protein family HMM PF02653 YP_002238479.1 identified by match to protein family HMM PF00005 YP_002238480.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002238481.1 identified by match to protein family HMM PF00532 YP_002238482.1 identified by match to protein family HMM PF00294 YP_002238483.1 identified by match to protein family HMM PF03437; match to protein family HMM TIGR00259 YP_002238484.1 identified by match to protein family HMM PF03070 YP_002238485.1 identified by match to protein family HMM PF00496 YP_002238486.1 identified by match to protein family HMM PF00528 YP_002238487.1 identified by match to protein family HMM PF00528 YP_002238488.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002238489.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002238490.1 identified by match to protein family HMM PF00529 YP_002238491.1 identified by match to protein family HMM PF01047 YP_002238492.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002238493.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_002238494.1 identified by match to protein family HMM PF06629 YP_002238495.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002238496.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002238497.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002238498.1 identified by match to protein family HMM PF00873 YP_002238499.1 identified by similarity to GB:BAC15558.1 YP_002238500.1 identified by match to protein family HMM PF01152 YP_002238501.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002238502.1 identified by similarity to SP:P97051; match to protein family HMM PF02979; match to protein family HMM TIGR01323 YP_002238503.1 identified by similarity to SP:P97052; match to protein family HMM PF02211 YP_002238504.1 identified by similarity to GB:CAI96188.1 YP_002238505.1 identified by similarity to GB:ABB10475.1 YP_002238507.1 identified by match to protein family HMM PF00300 YP_002238508.1 identified by similarity to RF:NP_407450.1 YP_002238509.1 identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03446 YP_002238510.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238511.1 identified by match to protein family HMM PF01925 YP_002238512.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002238513.1 identified by similarity to SP:P54715; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_002238514.1 identified by similarity to SP:Q9AGA6; match to protein family HMM PF02056 YP_002238515.1 identified by Glimmer3 YP_002238516.1 identified by similarity to SP:O34718; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879 YP_002238517.1 identified by match to protein family HMM PF00359 YP_002238519.1 identified by Glimmer3 YP_002238520.1 identified by similarity to GB:AAN76092.1 YP_002238521.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002238522.1 identified by Glimmer3 YP_002238523.1 identified by Glimmer3 YP_002238524.1 identified by Glimmer3 YP_002238525.1 identified by similarity to GB:AAQ60005.1 YP_002238526.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_002238527.1 identified by match to protein family HMM PF00144 YP_002238529.1 identified by match to protein family HMM PF01381 YP_002238530.1 identified by similarity to GB:AAX65000.1 YP_002238531.1 identified by match to protein family HMM PF00419 YP_002238532.1 identified by similarity to SP:P43661; match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002238533.1 identified by similarity to SP:P43662; match to protein family HMM PF00577 YP_002238534.1 identified by match to protein family HMM PF00419 YP_002238535.1 identified by similarity to SP:Q8CW29; match to protein family HMM PF02638 YP_002238536.1 identified by similarity to SP:P23874; match to protein family HMM PF07804; match to protein family HMM PF07805; match to protein family HMM TIGR03071 YP_002238537.1 identified by similarity to SP:P23873; match to protein family HMM PF01381 YP_002238538.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962 YP_002238539.1 identified by match to protein family HMM TIGR03180 YP_002238540.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002238541.1 identified by match to protein family HMM PF01494 YP_002238542.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238543.1 identified by match to protein family HMM PF00355 YP_002238544.1 identified by similarity to SP:O54037; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002238545.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238546.1 identified by match to protein family HMM PF00165 YP_002238548.1 identified by similarity to GB:CAM07330.1 YP_002238549.1 identified by similarity to GB:CAG75142.1 YP_002238550.1 identified by match to protein family HMM PF03171 YP_002238551.1 identified by match to protein family HMM PF03180 YP_002238552.1 identified by match to protein family HMM PF00005 YP_002238553.1 identified by match to protein family HMM PF00528 YP_002238554.1 identified by match to protein family HMM PF03060 YP_002238555.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238556.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_002238557.1 identified by Glimmer3 YP_002238558.1 identified by similarity to SP:P37479 YP_002238559.1 identified by match to protein family HMM PF00903 YP_002238560.1 identified by match to protein family HMM PF07690 YP_002238561.1 identified by similarity to GB:CAI59603.1 YP_002238562.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate YP_002238563.1 identified by match to protein family HMM PF02627 YP_002238564.1 identified by similarity to GB:CAK09546.1 YP_002238565.1 identified by Glimmer3 YP_002238566.1 identified by Glimmer3 YP_002238567.1 identified by similarity to GB:CAH21087.1 YP_002238568.1 identified by match to protein family HMM PF00583 YP_002238569.1 catalyzes the formation of D-tagaturonate from D-altronate YP_002238570.1 identified by match to protein family HMM PF00583 YP_002238571.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002238572.1 identified by similarity to GB:AAN80403.1 YP_002238573.1 catalyzes the formation of glutamate from glutamine YP_002238574.1 in Escherichia coli this enzyme appears to be an NAD+/NADP+-dependent succinate semialdehyde dehydrogenase YP_002238575.1 Similar to ER coli yneJ; identified by similarity to SP:P77309; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238576.1 identified by match to protein family HMM PF00583 YP_002238577.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_002238578.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238579.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002238580.1 identified by similarity to GB:ABJ00084.1; match to protein family HMM PF07005 YP_002238581.1 identified by similarity to GB:BAC22648.1; match to protein family HMM PF00465 YP_002238582.1 identified by match to protein family HMM PF00701 YP_002238583.1 identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002238584.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238585.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002238586.1 identified by similarity to SP:Q9S3J9; match to protein family HMM PF07690 YP_002238587.1 protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function YP_002238588.1 Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes YP_002238589.1 transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype; also activates sodA, zwf and micF YP_002238590.1 identified by similarity to SP:P31121 YP_002238591.1 identified by similarity to SP:P31125; match to protein family HMM PF00892 YP_002238592.1 YdeF; uncharacterized member of the major facilitator superfamily (MFS) of transporters YP_002238593.1 identified by match to protein family HMM PF01381 YP_002238594.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03410 YP_002238595.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR03411 YP_002238596.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR03408 YP_002238597.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR03409 YP_002238598.1 identified by match to protein family HMM PF01094; match to protein family HMM TIGR01409; match to protein family HMM TIGR03407 YP_002238599.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate YP_002238600.1 identified by similarity to GB:AAK25328.1 YP_002238601.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_002238602.1 identified by similarity to GB:CAB83606.1 YP_002238603.1 identified by match to protein family HMM PF00583 YP_002238604.1 transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer YP_002238605.1 identified by Glimmer3 YP_002238606.1 forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon YP_002238607.1 identified by similarity to SP:P02920; match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882 YP_002238608.1 identified by match to protein family HMM PF02463 YP_002238609.1 identified by similarity to GB:AAO49609.1 YP_002238610.1 identified by match to protein family HMM PF00144 YP_002238611.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238612.1 identified by match to protein family HMM PF03446 YP_002238613.1 identified by match to protein family HMM PF07005 YP_002238614.1 identified by match to protein family HMM PF00596 YP_002238615.1 identified by match to protein family HMM PF01261 YP_002238616.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function YP_002238617.1 identified by match to protein family HMM PF00165 YP_002238618.1 identified by match to protein family HMM PF00196 YP_002238619.1 identified by match to protein family HMM PF00563; match to protein family HMM PF04940 YP_002238620.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_002238621.1 identified by match to protein family HMM PF00011 YP_002238622.1 identified by match to protein family HMM PF00196 YP_002238623.1 identified by Glimmer3 YP_002238624.1 identified by Glimmer3 YP_002238625.1 identified by match to protein family HMM PF00583 YP_002238626.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238628.1 identified by similarity to GB:AAS47047.1; match to protein family HMM PF02463 YP_002238629.1 identified by similarity to GB:AAO49609.1 YP_002238630.1 identified by match to protein family HMM PF00144 YP_002238631.1 Similar to Escherichia coli ygbI; identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238632.1 identified by match to protein family HMM PF03446 YP_002238633.1 identified by match to protein family HMM PF07005 YP_002238634.1 identified by match to protein family HMM PF00596 YP_002238635.1 identified by match to protein family HMM PF01261 YP_002238636.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function YP_002238637.1 identified by match to protein family HMM PF00165 YP_002238638.1 identified by match to protein family HMM PF00196 YP_002238639.1 identified by match to protein family HMM PF00563; match to protein family HMM PF04940 YP_002238640.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_002238641.1 identified by match to protein family HMM PF00011 YP_002238642.1 identified by match to protein family HMM PF00196 YP_002238643.1 identified by Glimmer3 YP_002238644.1 identified by Glimmer3 YP_002238645.1 identified by match to protein family HMM PF00583 YP_002238646.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238647.1 identified by match to protein family HMM PF01810 YP_002238648.1 identified by match to protein family HMM PF01988 YP_002238650.1 identified by match to protein family HMM PF00440 YP_002238651.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002238652.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238653.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238655.1 identified by match to protein family HMM PF01609 YP_002238656.1 identified by similarity to RF:XP_001027999.1 YP_002238657.1 identified by Glimmer3 YP_002238658.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02224; match to protein family HMM TIGR02225 YP_002238659.1 identified by match to protein family HMM PF00589 YP_002238660.1 identified by Glimmer3 YP_002238661.1 identified by similarity to GB:ABK43867.1 YP_002238662.1 identified by similarity to GB:ABF09913.1 YP_002238663.1 identified by match to protein family HMM PF00899 YP_002238664.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization YP_002238665.1 identified by match to protein family HMM PF06183 YP_002238666.1 identified by similarity to GB:AAL94832.1; match to protein family HMM PF07087 YP_002238667.1 identified by similarity to SP:P03013; match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002238668.1 identified by similarity to GB:CAI43927.1 YP_002238670.1 identified by Glimmer3 YP_002238671.1 identified by Glimmer3 YP_002238672.1 identified by match to protein family HMM PF03245 YP_002238673.1 identified by match to protein family HMM PF00959 YP_002238674.1 identified by match to protein family HMM PF05106; match to protein family HMM TIGR01594 YP_002238675.1 identified by Glimmer3 YP_002238676.1 identified by Glimmer3 YP_002238677.1 identified by Glimmer3 YP_002238679.1 identified by similarity to RF:NP_951049.1 YP_002238680.1 identified by match to protein family HMM PF05866 YP_002238681.1 identified by similarity to GB:AAZ88459.1; match to protein family HMM PF07102 YP_002238682.1 identified by similarity to GB:AAX66528.1; match to protein family HMM PF07105 YP_002238683.1 identified by similarity to GB:AAX66529.1 YP_002238685.1 identified by Glimmer3 YP_002238686.1 identified by match to protein family HMM PF01844 YP_002238687.1 identified by similarity to SP:P50192 YP_002238688.1 identified by Glimmer3 YP_002238689.1 identified by similarity to SP:P75970 YP_002238690.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003 YP_002238691.1 identified by similarity to SP:P24171; match to protein family HMM PF01432 YP_002238692.1 NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine YP_002238693.1 Similar to Escherichia coli ydfH; identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002238694.1 identified by similarity to SP:P39177; match to protein family HMM PF00582 YP_002238695.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_002238696.1 identified by match to protein family HMM PF07690 YP_002238697.1 identified by match to protein family HMM PF02694 YP_002238698.1 identified by match to protein family HMM PF06932 YP_002238699.1 identified by match to protein family HMM PF00583 YP_002238701.1 identified by match to protein family HMM PF06649 YP_002238702.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166 YP_002238703.1 identified by similarity to SP:P18776; match to protein family HMM PF00037; match to protein family HMM TIGR02951 YP_002238704.1 identified by similarity to SP:P18777; match to protein family HMM PF04976 YP_002238705.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane YP_002238706.1 identified by match to protein family HMM PF00654 YP_002238707.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002238708.1 identified by similarity to SP:P50456; match to protein family HMM PF00480 YP_002238709.1 Similar to Escherichia coli ynfL; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238710.1 Similar to Escherichia coli ynfM; identified by match to protein family HMM PF07690 YP_002238711.1 identified by Glimmer3 YP_002238712.1 identified by match to protein family HMM PF02074 YP_002238713.1 identified by Glimmer3 YP_002238714.1 identified by Glimmer3 YP_002238715.1 identified by Glimmer3 YP_002238716.1 identified by match to protein family HMM PF00089 YP_002238717.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002238718.1 with MdtJ is involved in resistance to deoxycholate, nalidixic acid, fosfomycin, and SDS YP_002238719.1 with MdtI is involved in resistance to deoxycholate , nalidixic acid, fosfomycin, and SDS YP_002238720.1 transport of quorum-sensing signal; mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes YP_002238721.1 identified by match to protein family HMM TIGR01110 YP_002238722.1 identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132 YP_002238723.1 identified by similarity to GB:AAB97628.1; match to protein family HMM PF06857; match to protein family HMM TIGR03130 YP_002238724.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_002238725.1 identified by similarity to GB:BAA36208.1; match to protein family HMM PF06833; match to protein family HMM TIGR03134 YP_002238726.1 identified by match to protein family HMM PF03547; match to protein family HMM TIGR00946 YP_002238727.1 Catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_002238728.1 identified by similarity to GB:AAC45461.1; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238729.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002238730.1 identified by similarity to GB:CAD48864.1 YP_002238731.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration YP_002238732.1 response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration YP_002238733.1 identified by match to protein family HMM PF02424 YP_002238734.1 identified by match to protein family HMM PF00724; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01813 YP_002238735.1 identified by similarity to SP:P39414; match to protein family HMM PF00939; match to protein family HMM TIGR00785 YP_002238736.1 identified by similarity to SP:P14407; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_002238737.1 identified by match to protein family HMM PF00924 YP_002238738.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_002238739.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_002238740.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426 YP_002238741.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; match to protein family HMM TIGR02430 YP_002238742.1 identified by similarity to SP:Q59091; match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002238743.1 identified by similarity to SP:Q01103; match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002238744.1 identified by similarity to SP:Q52154; match to protein family HMM PF01614; match to protein family HMM PF09339; match to protein family HMM TIGR02431 YP_002238745.1 identified by match to protein family HMM PF01713 YP_002238746.1 identified by similarity to SP:P77744; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238747.1 identified by similarity to SP:P77357; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002238748.1 identified by similarity to SP:P76052; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002238749.1 identified by similarity to SP:P46133; match to protein family HMM PF03806; match to protein family HMM TIGR00819 YP_002238750.1 identified by Glimmer3 YP_002238751.1 identified by similarity to SP:P0AFH0; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002238752.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_002238753.1 with UspC and UspD is involved in resistance to UV irradiation YP_002238754.1 identified by similarity to SP:P64478 YP_002238755.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_002238756.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_002238757.1 identified by Glimmer3 YP_002238758.1 identified by Glimmer3 YP_002238759.1 Similar to Escherichia coli ydgH; identified by similarity to SP:P76177; match to protein family HMM PF07338 YP_002238760.1 identified by Glimmer3 YP_002238761.1 identified by similarity to SP:P18275; match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR00905 YP_002238762.1 identified by match to protein family HMM PF00106 YP_002238763.1 identified by match to protein family HMM PF06942 YP_002238764.1 response regulator in two-component regulatory system with RstB YP_002238765.1 identified by Glimmer3 YP_002238766.1 identified by similarity to SP:P18392; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002238767.1 binds to DNA replication terminator sequences to prevent passage of replication forks YP_002238768.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002238769.1 identified by similarity to SP:P0AC33; match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_002238770.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002238771.1 identified by similarity to GB:AAL20386.1; match to protein family HMM PF06097 YP_002238772.1 regulates malXY which are involved in maltose-glucose transport YP_002238773.1 phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS); catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane; component IIB catalyzes the phosphorylation of the sugar molecule; IIC forms the translocation channel and contains the substrate specific binding site YP_002238774.1 identified by similarity to SP:P23256; match to protein family HMM PF00155 YP_002238775.1 identified by match to protein family HMM PF01544 YP_002238776.1 identified by Glimmer3 YP_002238777.1 Similar to Escherichia coli ydfZ; identified by similarity to SP:P64466; match to protein family HMM TIGR03318 YP_002238778.1 identified by similarity to GB:AAW85649.1 YP_002238779.1 identified by match to protein family HMM PF06993 YP_002238780.1 identified by match to protein family HMM PF04143 YP_002238781.1 identified by match to protein family HMM PF01206 YP_002238783.1 identified by similarity to GB:ABB65073.1; match to protein family HMM PF01679 YP_002238784.1 identified by similarity to SP:P33898; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002238785.1 NAD-linked YP_002238786.1 identified by Glimmer3 YP_002238787.1 identified by similarity to GB:ABG69428.1; match to protein family HMM PF02698 YP_002238788.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238789.1 identified by similarity to SP:P0AAE0; match to protein family HMM PF00324 YP_002238790.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_002238791.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_002238792.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR03240 YP_002238793.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244 YP_002238794.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate YP_002238795.1 identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002238796.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002238797.1 identified by similarity to GB:AAV97474.1 YP_002238798.1 identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930 YP_002238799.1 identified by match to protein family HMM PF01494 YP_002238800.1 identified by match to protein family HMM PF00248 YP_002238801.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002238802.1 identified by match to protein family HMM PF00248 YP_002238803.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238804.1 identified by match to protein family HMM PF01047 YP_002238805.1 identified by match to protein family HMM PF07690 YP_002238806.1 identified by match to protein family HMM PF00529 YP_002238807.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_002238808.1 identified by match to protein family HMM PF01596 YP_002238809.1 identified by Glimmer3 YP_002238810.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain YP_002238811.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002238812.1 identified by similarity to GB:ABM18994.1 YP_002238813.1 identified by match to protein family HMM PF01381 YP_002238814.1 identified by similarity to SP:P77181; match to protein family HMM PF00132; match to protein family HMM TIGR02287 YP_002238815.1 identified by similarity to SP:P76086; match to protein family HMM PF07848; match to protein family HMM PF08223; match to protein family HMM TIGR02277 YP_002238816.1 identified by similarity to SP:P76085; match to protein family HMM TIGR02155 YP_002238817.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_002238818.1 identified by similarity to SP:P76084; match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286 YP_002238819.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation YP_002238820.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002238821.1 identified by similarity to SP:P76082; match to protein family HMM PF00378 YP_002238822.1 identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_002238823.1 identified by similarity to SP:P76080; match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_002238824.1 identified by similarity to SP:P76079; match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_002238825.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_002238826.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_002238827.1 catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA YP_002238828.1 catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine YP_002238829.1 identified by similarity to SP:Q9BV79; match to protein family HMM PF08240 YP_002238830.1 identified by match to protein family HMM PF05721 YP_002238831.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002238832.1 identified by similarity to GB:AAG08776.1; match to protein family HMM PF06267 YP_002238833.1 identified by match to protein family HMM PF01042 YP_002238834.1 identified by similarity to GB:AAG08778.1 YP_002238835.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238836.1 identified by Glimmer3 YP_002238837.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238838.1 identified by match to protein family HMM PF05721 YP_002238839.1 identified by match to protein family HMM PF00497 YP_002238840.1 identified by match to protein family HMM PF00596 YP_002238841.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546 YP_002238842.1 identified by similarity to SP:P80668; match to protein family HMM PF00171 YP_002238843.1 identified by Glimmer3 YP_002238844.1 activator of genes involved in phenylacetic acid catabolism YP_002238845.1 identified by similarity to GB:AAL20562.1; match to protein family HMM PF07027 YP_002238847.1 identified by similarity to SP:P52645 YP_002238848.1 identified by match to protein family HMM PF09335 YP_002238849.1 identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002238850.1 identified by similarity to SP:P52644; match to protein family HMM PF03724 YP_002238851.1 identified by similarity to SP:P0ACW2 YP_002238852.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_002238853.1 identified by Glimmer3 YP_002238854.1 identified by similarity to SP:P77747; match to protein family HMM PF00267 YP_002238855.1 identified by similarity to RF:NP_405968.1 YP_002238856.1 identified by similarity to SP:P37903; match to protein family HMM PF00582 YP_002238857.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_002238858.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_002238859.1 identified by match to protein family HMM PF01544 YP_002238860.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238861.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002238862.1 identified by Glimmer3 YP_002238863.1 identified by similarity to RF:NP_994839.1 YP_002238864.1 identified by similarity to SP:P15993; match to protein family HMM PF00324 YP_002238865.1 identified by match to protein family HMM PF01037 YP_002238866.1 identified by similarity to GB:CAG68213.1; match to protein family HMM PF02588 YP_002238867.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_002238868.1 identified by match to protein family HMM PF00528 YP_002238869.1 identified by match to protein family HMM PF00005 YP_002238870.1 identified by match to protein family HMM PF03180 YP_002238871.1 identified by match to protein family HMM PF00155; match to protein family HMM PF04864 YP_002238872.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002238873.1 identified by match to protein family HMM PF00440 YP_002238874.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_002238875.1 identified by match to protein family HMM PF00753 YP_002238876.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238877.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238878.1 identified by match to protein family HMM PF05368 YP_002238879.1 identified by similarity to GB:CAD33779.1 YP_002238880.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_002238881.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002238882.1 Similar to Escherichia coli yjgJ; identified by match to protein family HMM PF00440 YP_002238887.1 identified by similarity to GB:CAE15619.1 YP_002238888.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361 YP_002238889.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345 YP_002238890.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344 YP_002238891.1 identified by match to protein family HMM PF00691 YP_002238892.1 identified by similarity to GB:CAH20725.1; match to protein family HMM TIGR03349 YP_002238893.1 identified by match to protein family HMM PF05936; match to protein family HMM TIGR03353 YP_002238894.1 identified by match to protein family HMM PF05943; match to protein family HMM TIGR03355 YP_002238895.1 identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358 YP_002238896.1 identified by Glimmer3 YP_002238897.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_002238898.1 identified by match to protein family HMM PF00106 YP_002238899.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238902.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_002238903.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_002238904.1 identified by Glimmer3 YP_002238906.1 identified by match to protein family HMM PF00535 YP_002238907.1 identified by similarity to GB:ABA21193.1 YP_002238908.1 identified by similarity to GB:ABA21192.1 YP_002238909.1 identified by similarity to GB:BAB75455.1 YP_002238910.1 identified by Glimmer3 YP_002238911.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447 YP_002238912.1 identified by match to protein family HMM PF02836; match to protein family HMM PF02837 YP_002238913.1 identified by match to protein family HMM PF00248 YP_002238914.1 identified by match to protein family HMM PF07690 YP_002238916.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238917.1 identified by Glimmer3 YP_002238918.1 identified by similarity to GB:AAZ71437.1 YP_002238919.1 identified by similarity to GB:CAG74461.1 YP_002238920.1 identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005 YP_002238921.1 identified by similarity to GB:AAD31786.2; match to protein family HMM PF00528 YP_002238922.1 identified by similarity to GB:AAD31785.1 YP_002238923.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238924.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002238925.1 identified by match to protein family HMM PF00497 YP_002238926.1 identified by match to protein family HMM PF00005 YP_002238927.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238928.1 identified by match to protein family HMM PF03972 YP_002238929.1 identified by similarity to SP:P77348; match to protein family HMM PF00496 YP_002238930.1 identified by Glimmer3 YP_002238931.1 identified by match to protein family HMM PF00246 YP_002238932.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002238933.1 identified by similarity to SP:P0A862; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002238934.1 identified by similarity to SP:P75747; match to protein family HMM PF05145; match to protein family HMM TIGR03082 YP_002238935.1 regulates genes involved in the biosynthesis and transport of aromatic amino acids YP_002238936.1 identified by match to protein family HMM PF05128; match to protein family HMM TIGR01620 YP_002238937.1 identified by similarity to RF:NP_287867.1; match to protein family HMM PF04317 YP_002238938.1 identified by similarity to SP:P0AFV8; match to protein family HMM TIGR02979 YP_002238939.1 with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock YP_002238940.1 acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding YP_002238941.1 involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF YP_002238942.1 transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor YP_002238943.1 identified by match to protein family HMM PF07690 YP_002238944.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002238945.1 identified by Glimmer3 YP_002238946.1 identified by match to protein family HMM PF00165 YP_002238947.1 identified by similarity to GB:CAE44092.1 YP_002238948.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002238949.1 Sap operon appears to be interrupted with sapAB separated from sapCDF; identified by similarity to SP:P36634; match to protein family HMM PF00496 YP_002238950.1 Sap operon appears to be interrupted with sapAB separated from sapCDF; identified by similarity to SP:P0AGH3; match to protein family HMM PF00528 YP_002238951.1 Similar to Escherichia coli yedK; identified by similarity to SP:P76318; match to protein family HMM PF02586 YP_002238952.1 binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization YP_002238953.1 binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC); involved in translesion polymerization YP_002238955.1 identified by Glimmer3 YP_002238956.1 identified by Glimmer3 YP_002238957.1 identified by Glimmer3 YP_002238958.1 identified by similarity to GB:AAN69451.1 YP_002238960.1 identified by match to protein family HMM PF03837 YP_002238961.1 identified by similarity to RF:YP_296574.1 YP_002238962.1 identified by Glimmer3 YP_002238963.1 identified by similarity to SP:P05998 YP_002238964.1 identified by match to protein family HMM PF00589 YP_002238965.1 Sap operon appears to be interrupted with sapAB separated from sapCDF; identified by similarity to SP:P0AGH5; match to protein family HMM PF00528 YP_002238966.1 Sap operon appears to be interrupted with sapAB separated from sapCDF; identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002238967.1 Sap operon appears to be interrupted with sapAB separated from sapCDF; identified by similarity to SP:P36638; match to protein family HMM PF00005 YP_002238968.1 identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225 YP_002238969.1 identified by match to protein family HMM PF00005 YP_002238970.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238971.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002238972.1 identified by match to protein family HMM PF00497 YP_002238973.1 identified by similarity to GB:CAE36363.1; match to protein family HMM PF05962 YP_002238974.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002238975.1 identified by Glimmer3 YP_002238976.1 Similar to Escherichia coli yciW; identified by similarity to SP:P76035 YP_002238977.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction YP_002238978.1 identified by Glimmer3 YP_002238979.1 identified by similarity to GB:AAX65604.1 YP_002238980.1 Similar to Escherichia coli yciT; identified by similarity to SP:P76034; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002238981.1 identified by similarity to SP:P37723 YP_002238982.1 involved in start site selection during the initiation of translation YP_002238983.1 identified by similarity to SP:P08244; match to protein family HMM PF00215; match to protein family HMM TIGR01740 YP_002238984.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002238985.1 identified by match to protein family HMM PF06305 YP_002238986.1 identified by similarity to SP:P0A924; match to protein family HMM PF01569 YP_002238987.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_002238988.1 Catalyzes the conversion of citrate to isocitrate YP_002238989.1 identified by Glimmer3 YP_002238990.1 identified by similarity to GB:AAX65615.1 YP_002238991.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_002238992.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002238993.1 identified by similarity to GB:ABG69335.1 YP_002238994.1 Similar to Escherichia coli yciN; identified by similarity to SP:P0AB64 YP_002238995.1 SohB; periplasmic protein; member of the peptidase S49 family YP_002238996.1 identified by Glimmer3 YP_002238997.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002238998.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_002238999.1 catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA YP_002239000.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239001.1 identified by match to protein family HMM PF00892 YP_002239002.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_002239003.1 identified by match to protein family HMM PF02811 YP_002239005.1 with component II, the glutamine amidotransferase catalyzes the formation of anthranilate from chorismate and glutamine YP_002239006.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis YP_002239007.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_002239008.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002239009.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002239010.1 identified by similarity to SP:P70788; match to protein family HMM PF05161 YP_002239011.1 identified by similarity to SP:Q44471; match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_002239012.1 identified by similarity to SP:P70786; match to protein family HMM PF07690 YP_002239013.1 identified by similarity to SP:P52669; match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239014.1 identified by match to protein family HMM PF01047 YP_002239015.1 identified by match to protein family HMM PF08240 YP_002239017.1 Fiu; YbiL; porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine, dihydroxybenzoate) and beta lactam agents; Fiu interacts with TonB which provides the energy required for transport across the outer membrane; acts as a receptor for iron-siderophores and microcins E492, M, and H47; outer membrane protein YP_002239018.1 identified by match to protein family HMM PF03171 YP_002239019.1 receptor for colicin S4 YP_002239020.1 identified by match to protein family HMM PF03692 YP_002239021.1 identified by match to protein family HMM PF06790 YP_002239022.1 Involved in cell division; probably involved in intracellular septation YP_002239023.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space YP_002239024.1 identified by similarity to SP:P0A8Z0; match to protein family HMM PF03061 YP_002239025.1 Similar to Escherichia coli yniB; identified by similarity to SP:P76208 YP_002239026.1 YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate YP_002239027.1 identified by similarity to SP:P37769; match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01832 YP_002239028.1 identified by match to protein family HMM PF04307 YP_002239029.1 Similar to Escherichia coli ydjN; identified by match to protein family HMM PF00375 YP_002239030.1 identified by similarity to SP:P0AE62 YP_002239031.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide YP_002239032.1 identified by similarity to SP:Q8FH10; match to protein family HMM PF04794 YP_002239033.1 identified by similarity to SP:P17411; match to protein family HMM PF02056 YP_002239034.1 represses the celABCDF-ydjC operon involved in carbon uptake YP_002239035.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake YP_002239036.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake YP_002239037.1 identified by Glimmer3 YP_002239038.1 catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N,N'-diacetylchitobiose transport; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake YP_002239039.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein YP_002239040.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002239041.1 3' incision activity; acts with UvrC YP_002239042.1 periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP YP_002239043.1 identified by Glimmer3 YP_002239044.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_002239045.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_002239046.1 identified by similarity to SP:P76217; match to protein family HMM PF00171; match to protein family HMM TIGR03240 YP_002239047.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03243; match to protein family HMM TIGR03244 YP_002239048.1 catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate; also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate YP_002239049.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_002239050.1 identified by match to protein family HMM PF09335 YP_002239051.1 identified by similarity to SP:P76221; match to protein family HMM PF09335 YP_002239052.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002239053.1 identified by similarity to SP:P76223 YP_002239054.1 identified by similarity to SP:P76224 YP_002239055.1 identified by match to protein family HMM PF00005 YP_002239056.1 identified by similarity to SP:P78067 YP_002239057.1 identified by match to protein family HMM PF01066 YP_002239058.1 identified by similarity to SP:P77788; match to protein family HMM PF00293 YP_002239059.1 identified by Glimmer3 YP_002239060.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002239061.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824 YP_002239062.1 decatenates replicating daughter chromosomes YP_002239063.1 catalyzes the formation of selenophosphate from selenide and ATP YP_002239064.1 identified by match to protein family HMM PF01569 YP_002239065.1 identified by match to protein family HMM PF00881 YP_002239066.1 SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane YP_002239067.1 converts asparagine to aspartate and ammonia YP_002239068.1 catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide YP_002239069.1 identified by match to protein family HMM PF01844 YP_002239070.1 identified by similarity to SP:P76231; match to protein family HMM PF07023 YP_002239071.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_002239072.1 identified by similarity to SP:P0A9B2; match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002239073.1 identified by match to protein family HMM PF01263 YP_002239074.1 identified by match to protein family HMM PF00248 YP_002239075.1 identified by similarity to SP:P0A908; match to protein family HMM PF06629 YP_002239076.1 Similar to Escherichia coli yeaG; identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_002239077.1 identified by similarity to SP:Q8ZPW3; match to protein family HMM PF04285 YP_002239079.1 identified by match to protein family HMM PF00255 YP_002239081.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239082.1 identified by match to protein family HMM PF01370 YP_002239083.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239084.1 identified by similarity to SP:Q9S3J9; match to protein family HMM PF07690 YP_002239085.1 identified by match to protein family HMM PF03417 YP_002239086.1 similar to ATP-binding component of ABC transporters YP_002239087.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_002239088.1 identified by match to protein family HMM PF00497 YP_002239089.1 identified by similarity to GB:CAE51627.1 YP_002239090.1 identified by match to protein family HMM PF00202 YP_002239091.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002239092.1 identified by match to protein family HMM PF00165 YP_002239093.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_002239094.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239095.1 identified by match to protein family HMM PF00724 YP_002239096.1 identified by similarity to GB:ABA76388.1; match to protein family HMM PF07366 YP_002239097.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002239098.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239099.1 identified by similarity to GB:AAY92617.1 YP_002239100.1 identified by Glimmer3 YP_002239101.1 identified by similarity to SP:P22036; match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_002239102.1 identified by Glimmer3 YP_002239103.1 identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002239104.1 identified by similarity to GB:AAY92621.1 YP_002239105.1 identified by similarity to SP:Q01911; match to protein family HMM PF01494 YP_002239106.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02909 YP_002239107.1 identified by Glimmer3 YP_002239108.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002239109.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239110.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; match to protein family HMM PF08279 YP_002239111.1 identified by match to protein family HMM PF00497 YP_002239112.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002239113.1 identified by match to protein family HMM PF00005 YP_002239114.1 identified by similarity to GB:AAC82366.1; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910 YP_002239115.1 identified by similarity to SP:P51981; match to protein family HMM PF01188 YP_002239116.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002239117.1 identified by match to protein family HMM PF00701 YP_002239118.1 identified by similarity to SP:Q59321; match to protein family HMM PF00117 YP_002239119.1 identified by similarity to SP:Q02635; match to protein family HMM PF00155 YP_002239120.1 identified by Glimmer3 YP_002239121.1 identified by match to protein family HMM PF00440 YP_002239122.1 identified by similarity to GB:ABK11428.1 YP_002239123.1 identified by Glimmer3 YP_002239124.1 identified by similarity to SP:P0AG11; match to protein family HMM PF00717 YP_002239125.1 identified by similarity to SP:P04152; match to protein family HMM PF00817 YP_002239126.1 identified by similarity to SP:P0A1G3; match to protein family HMM PF06183 YP_002239127.1 identified by match to protein family HMM PF01075 YP_002239128.1 identified by Glimmer3 YP_002239129.1 Similar to Escherichia coli yeaK; identified by match to protein family HMM PF04073 YP_002239130.1 identified by Glimmer3 YP_002239131.1 Similar to Escherichia coli yeaL; identified by similarity to SP:P0ACY8; match to protein family HMM PF04284 YP_002239132.1 Similar to Escherichia coli yeaM; identified by match to protein family HMM PF00165 YP_002239133.1 Similar to Escherichia coli yeaN; identified by match to protein family HMM PF07690; match to protein family HMM TIGR00896 YP_002239134.1 identified by match to protein family HMM PF00117 YP_002239135.1 identified by similarity to GB:ABC89700.1; match to protein family HMM PF04463 YP_002239136.1 Similar to Escherichia coli yeaO; identified by similarity to SP:P76243; match to protein family HMM PF04343 YP_002239137.1 identified by match to protein family HMM PF03891 YP_002239138.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254 YP_002239139.1 identified by Glimmer3 YP_002239140.1 identified by Glimmer3 YP_002239142.1 identified by similarity to SP:P64445 YP_002239143.1 identified by similarity to SP:P76249; match to protein family HMM PF01810 YP_002239144.1 identified by match to protein family HMM PF03279; match to protein family HMM TIGR02207 YP_002239145.1 identified by Glimmer3 YP_002239146.1 identified by similarity to SP:P06608; match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_002239147.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_002239148.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002239149.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239150.1 identified by match to protein family HMM PF01977 YP_002239151.1 identified by match to protein family HMM PF07813 YP_002239152.1 identified by match to protein family HMM PF00563 YP_002239154.1 identified by similarity to GB:ABG72520.1 YP_002239155.1 identified by Glimmer3 YP_002239156.1 identified by Glimmer3 YP_002239157.1 identified by match to protein family HMM PF00165 YP_002239158.1 identified by Glimmer3 YP_002239159.1 identified by match to protein family HMM PF04632 YP_002239160.1 identified by Glimmer3 YP_002239161.1 identified by match to protein family HMM PF00529 YP_002239162.1 identified by similarity to GB:CAA71556.1; match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002239163.1 identified by similarity to GB:CAA71555.1; match to protein family HMM PF01654 YP_002239164.1 identified by similarity to SP:P60355; match to protein family HMM PF05067 YP_002239165.1 Similar to Escherichia coli yciE; identified by similarity to SP:P21363; match to protein family HMM PF05974 YP_002239166.1 identified by similarity to SP:P21362; match to protein family HMM PF05974 YP_002239167.1 identified by similarity to RF:NP_455967.1 YP_002239168.1 identified by Glimmer3 YP_002239169.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002239170.1 identified by similarity to GB:AAG05238.1; match to protein family HMM PF06906 YP_002239171.1 identified by match to protein family HMM PF00857 YP_002239172.1 identified by match to protein family HMM PF02566 YP_002239173.1 identified by match to protein family HMM PF03992 YP_002239174.1 identified by match to protein family HMM PF01842 YP_002239175.1 identified by match to protein family HMM PF01022 YP_002239176.1 identified by Glimmer3 YP_002239177.1 identified by Glimmer3 YP_002239178.1 identified by Glimmer3 YP_002239180.1 identified by match to protein family HMM PF00990; match to protein family HMM PF05230; match to protein family HMM TIGR00254 YP_002239181.1 identified by Glimmer3 YP_002239182.1 identified by similarity to GB:AAR83037.1; match to protein family HMM PF09327 YP_002239183.1 identified by similarity to SP:P03729; match to protein family HMM PF00877 YP_002239184.1 identified by match to protein family HMM PF05100; match to protein family HMM TIGR01600 YP_002239185.1 identified by similarity to GB:BAC46134.1 YP_002239186.1 identified by match to protein family HMM PF05939 YP_002239187.1 identified by similarity to GB:AAR83022.1 YP_002239188.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002239189.1 identified by match to protein family HMM PF03354 YP_002239190.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002239191.1 identified by similarity to GB:AAR83078.1 YP_002239193.1 identified by match to protein family HMM PF01844 YP_002239194.1 identified by similarity to GB:CAA60564.1 YP_002239195.1 identified by similarity to GB:AAW51214.1 YP_002239196.1 identified by match to protein family HMM PF00959 YP_002239197.1 identified by Glimmer3 YP_002239198.1 identified by similarity to GB:CAJ97157.1; match to protein family HMM PF03681 YP_002239199.1 identified by similarity to SP:Q7MZD9; match to protein family HMM PF07927 YP_002239200.1 identified by similarity to GB:ABG53642.1; match to protein family HMM PF03235 YP_002239201.1 identified by similarity to GB:ABG53643.1 YP_002239202.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002239203.1 identified by match to protein family HMM PF06530 YP_002239204.1 identified by match to protein family HMM PF06914 YP_002239205.1 identified by similarity to GB:BAB34944.1 YP_002239206.1 identified by match to protein family HMM PF01726 YP_002239208.1 identified by match to protein family HMM PF06183 YP_002239209.1 identified by Glimmer3 YP_002239210.1 identified by similarity to GB:CAH16334.1; match to protein family HMM PF08279 YP_002239211.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239212.1 identified by Glimmer3 YP_002239213.1 identified by similarity to GB:ABK12572.1 YP_002239214.1 identified by Glimmer3 YP_002239215.1 identified by match to protein family HMM PF00563; match to protein family HMM PF01590 YP_002239216.1 identified by Glimmer3 YP_002239217.1 identified by Glimmer3 YP_002239218.1 identified by similarity to GB:ABI25676.1 YP_002239219.1 identified by similarity to GB:AAW62196.1 YP_002239221.1 identified by similarity to GB:AAF84925.1 YP_002239222.1 identified by match to protein family HMM PF01381 YP_002239223.1 identified by similarity to GB:CAI10253.1 YP_002239225.1 identified by match to protein family HMM PF02082 YP_002239226.1 identified by Glimmer3 YP_002239228.1 identified by similarity to PDB:1PM6_A YP_002239229.1 identified by match to protein family HMM PF00589; match to protein family HMM PF09003 YP_002239230.1 Converts isocitrate to alpha ketoglutarate YP_002239231.1 identified by similarity to SP:P75966; match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_002239232.1 identified by match to protein family HMM PF00293 YP_002239233.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002239234.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_002239235.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002239236.1 identified by match to protein family HMM PF07883 YP_002239237.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002239238.1 response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress YP_002239239.1 identified by similarity to SP:P23837; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002239240.1 Similar to Escherichia coli ycfD; identified by match to protein family HMM PF08007 YP_002239241.1 identified by match to protein family HMM PF07605 YP_002239242.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002239243.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_002239244.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component YP_002239245.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_002239246.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate YP_002239247.1 identified by similarity to GB:ABM39472.1 YP_002239248.1 identified by match to protein family HMM PF00501 YP_002239249.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002239250.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_002239251.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002239252.1 identified by similarity to SP:P05706; match to protein family HMM PF03829 YP_002239253.1 transports degraded pectin products into the bacterial cell YP_002239254.1 identified by similarity to SP:P56580; match to protein family HMM PF03612; match to protein family HMM PF07005 YP_002239255.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002239256.1 identified by similarity to GB:CAD98882.1; match to protein family HMM PF00121; match to protein family HMM TIGR00419 YP_002239257.1 identified by match to protein family HMM PF04198 YP_002239258.1 identified by Glimmer3 YP_002239259.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002239260.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine YP_002239261.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane YP_002239262.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_002239263.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane YP_002239264.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002239265.1 identified by Glimmer3 YP_002239266.1 identified by match to protein family HMM PF01476; match to protein family HMM PF03734 YP_002239267.1 Similar to Escherichia coli ycfR; identified by similarity to SP:P0AB40; match to protein family HMM PF07338 YP_002239268.1 Similar to Escherichia coli ycfQ; identified by match to protein family HMM PF00440 YP_002239269.1 identified by Glimmer3 YP_002239270.1 identified by similarity to SP:P14542; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_002239271.1 identified by match to protein family HMM PF05433 YP_002239272.1 identified by similarity to SP:P00393; match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992 YP_002239273.1 identified by Glimmer3 YP_002239274.1 ycfP; identified by similarity to SP:P0A8E4; match to protein family HMM PF05728 YP_002239275.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_002239276.1 catalyzes the phosphorylation of thiamine to thiamine phosphate YP_002239277.1 identified by match to protein family HMM TIGR02722 YP_002239278.1 identified by match to protein family HMM PF07233 YP_002239279.1 identified by similarity to SP:P0ACE7; match to protein family HMM PF01230 YP_002239280.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002239281.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002239282.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002239283.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002239284.1 identified by similarity to SP:P28306; match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002239285.1 identified by similarity to SP:P28305; match to protein family HMM PF01063; match to protein family HMM TIGR03461 YP_002239286.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002239287.1 carries the fatty acid chain in fatty acid biosynthesis YP_002239288.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002239289.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002239290.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002239291.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002239292.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002239293.1 identified by similarity to SP:P0AB28; match to protein family HMM PF02620 YP_002239294.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002239295.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA YP_002239296.1 bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase YP_002239297.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239298.1 identified by match to protein family HMM PF07690 YP_002239299.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_002239300.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002239301.1 identified by similarity to SP:P29217; match to protein family HMM PF04337 YP_002239302.1 identified by similarity to SP:P0A948; match to protein family HMM PF00583 YP_002239303.1 Confers resistance to norfloxacin and enoxacin YP_002239304.1 Similar to Escherichia coli yceB; identified by match to protein family HMM PF07273 YP_002239305.1 identified by Glimmer3 YP_002239306.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002239307.1 identified by similarity to SP:P0ABR4; match to protein family HMM PF06183 YP_002239308.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing YP_002239309.1 catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde; FAD-binding; can also catalyze the demethylation of other N-methyl amino acids YP_002239310.1 identified by similarity to RF:NP_460130.1 YP_002239311.1 identified by match to protein family HMM PF00581 YP_002239312.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002239313.1 Confers resistance to fosfomycin and deoxycholate YP_002239314.1 identified by similarity to SP:P25738 YP_002239315.1 identified by match to protein family HMM PF07119 YP_002239316.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_002239317.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan YP_002239318.1 required for the transfer of succinyl residues to the glucan backbone YP_002239319.1 identified by match to protein family HMM PF00440 YP_002239320.1 Similar to Escherichia coli ymdB; identified by match to protein family HMM PF01661 YP_002239321.1 identified by match to protein family HMM PF06496 YP_002239322.1 identified by match to protein family HMM PF06192 YP_002239323.1 identified by match to protein family HMM PF02811 YP_002239324.1 identified by similarity to SP:P75913; match to protein family HMM PF02826 YP_002239325.1 identified by similarity to SP:P53608; match to protein family HMM PF00491 YP_002239326.1 identified by match to protein family HMM PF00440 YP_002239327.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239328.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_002239329.1 identified by match to protein family HMM PF00857 YP_002239330.1 identified by similarity to SP:P0A9K1; match to protein family HMM PF02562 YP_002239331.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01409; match to protein family HMM TIGR01412; match to protein family HMM TIGR01413 YP_002239332.1 Similar to Escherichia coli ycdO; identified by similarity to SP:P0AB25; match to protein family HMM PF04302 YP_002239333.1 identified by similarity to SP:P75901; match to protein family HMM PF03239; match to protein family HMM TIGR00145 YP_002239334.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002239336.1 identified by similarity to SP:P07117; match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_002239337.1 identified by Glimmer3 YP_002239338.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_002239339.1 identified by similarity to GB:AAL20054.1; match to protein family HMM PF07007 YP_002239340.1 identified by similarity to SP:P0ACU2; match to protein family HMM PF00440; match to protein family HMM PF08362 YP_002239341.1 identified by similarity to SP:P75898; match to protein family HMM PF00296 YP_002239342.1 identified by similarity to SP:P75897; match to protein family HMM PF00857 YP_002239343.1 identified by similarity to SP:P0AFQ5; match to protein family HMM PF01042 YP_002239344.1 identified by similarity to SP:P75895; match to protein family HMM PF00561 YP_002239345.1 identified by similarity to SP:P75894; match to protein family HMM PF00881 YP_002239346.1 identified by similarity to SP:P75893; match to protein family HMM PF01613 YP_002239347.1 identified by similarity to SP:P75892; match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002239348.1 identified by Glimmer3 YP_002239349.1 identified by Glimmer3 YP_002239350.1 identified by match to protein family HMM PF00892 YP_002239351.1 stationary phase protein that binds TrpR repressor YP_002239353.1 identified by Glimmer3 YP_002239354.1 identified by similarity to SP:P19926; match to protein family HMM PF00328 YP_002239355.1 identified by match to protein family HMM PF01638 YP_002239356.1 identified by match to protein family HMM PF00106 YP_002239357.1 identified by Glimmer3 YP_002239358.1 identified by Glimmer3 YP_002239359.1 identified by similarity to SP:P76037; match to protein family HMM PF00324 YP_002239360.1 identified by similarity to SP:P78061; match to protein family HMM PF00120 YP_002239361.1 catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate YP_002239362.1 regulates genes involved in putrescine degradation YP_002239363.1 catalyzes the formation of gamma-glutamyl-gamma-aminobutyrate from Gamma-glutamyl-gamma-aminobutyraldehyde; involved in putrescine degradation YP_002239364.1 identified by similarity to SP:P37906; match to protein family HMM PF01266 YP_002239365.1 Similar to Escherichia coli yeaT; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239366.1 identified by similarity to SP:Q51945; match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_002239367.1 member of the betaine, carnitine, choline transporter (BCCT) family; unknown function YP_002239368.1 identified by match to protein family HMM PF00355 YP_002239369.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_002239370.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002239371.1 identified by similarity to SP:P32670; match to protein family HMM PF00359; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002239372.1 FrwC with FrwB, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; forms translocation channel and contains the specific substrate-binding site YP_002239373.1 FrwB with FrwC, FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell; cytoplasmic protein that interacts with complex EIIA; contains the second phosphorylation site of the PTS YP_002239374.1 involved in production of D-lactate from glucose under microaerobic conditions; cytoplasmic protein YP_002239375.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002239376.1 FrwD with FrwB, FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell; phosphorylated by EIIA; FrwB homolog YP_002239377.1 identified by match to protein family HMM PF05721 YP_002239378.1 identified by Glimmer3 YP_002239379.1 Similar to Escherichia coli yijO; identified by match to protein family HMM PF00165 YP_002239380.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002239381.1 identified by similarity to SP:P21410; match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002239382.1 identified by similarity to SP:P21409; match to protein family HMM PF00528 YP_002239383.1 identified by similarity to SP:P21408; match to protein family HMM PF01547 YP_002239384.1 Similar to Escherichia coli ycgG; identified by match to protein family HMM PF00563 YP_002239385.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_002239386.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002239387.1 identified by similarity to SP:P06202; match to protein family HMM PF00496 YP_002239388.1 identified by match to protein family HMM PF01027 YP_002239389.1 transfers sulfur from TusBCD complex to MnmA; involved in thiouridation of U34 position of some tRNAs YP_002239390.1 catalyzes the hydrolysis of acylphosphate YP_002239392.1 identified by similarity to SP:P77368; match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_002239393.1 identified by match to protein family HMM PF03602 YP_002239394.1 identified by similarity to SP:P0AB20; match to protein family HMM PF08755; match to protein family HMM TIGR02097 YP_002239395.1 identified by match to protein family HMM PF02629 YP_002239396.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002239397.1 catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand YP_002239398.1 identified by similarity to GB:AAN79566.1; match to protein family HMM PF03733 YP_002239399.1 identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667 YP_002239400.1 identified by similarity to SP:P75869; match to protein family HMM PF04993; match to protein family HMM PF04994 YP_002239401.1 identified by Glimmer3 YP_002239402.1 identified by similarity to SP:P08848; match to protein family HMM PF03846; match to protein family HMM TIGR00623 YP_002239403.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d YP_002239404.1 Similar to Escherichia coli ycbG; identified by similarity to SP:P0A8N2; match to protein family HMM PF06303 YP_002239406.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_002239407.1 identified by match to protein family HMM PF03886 YP_002239408.1 identified by match to protein family HMM PF02470 YP_002239409.1 identified by match to protein family HMM PF04403; match to protein family HMM TIGR00155 YP_002239410.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth YP_002239411.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_002239412.1 identified by match to protein family HMM PF00111; match to protein family HMM PF03473; match to protein family HMM PF03476 YP_002239413.1 identified by match to protein family HMM PF07126 YP_002239414.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002239415.1 identified by similarity to SP:P80644; match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002239416.1 identified by similarity to SP:P75853; match to protein family HMM PF04069; match to protein family HMM TIGR01728 YP_002239417.1 catalyzes the release of sulfite from alkanesulfonates YP_002239418.1 part of the ABC type transport system for alkanesulfonate SsuABC; SsuB the ATP-binding subunit and SsuC the permease YP_002239419.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease YP_002239420.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_002239421.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_002239422.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002239423.1 identified by similarity to GB:AAR84610.1; match to protein family HMM PF00267 YP_002239424.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_002239425.1 identified by match to protein family HMM PF00753 YP_002239426.1 identified by match to protein family HMM PF05951; match to protein family HMM PF08291; match to protein family HMM TIGR01409 YP_002239427.1 Similar to Escherichia coli ycbB; identified by match to protein family HMM PF01471 YP_002239428.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects YP_002239429.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division YP_002239430.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division YP_002239431.1 involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA YP_002239432.1 identified by similarity to SP:P0AB01; match to protein family HMM PF02698 YP_002239434.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002239435.1 Similar to Escherichia coli ycaR; identified by similarity to SP:P0AB00; match to protein family HMM PF03966 YP_002239436.1 identified by match to protein family HMM PF06224 YP_002239437.1 involved in the transport of lipid A across the inner membrane YP_002239438.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002239439.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_002239440.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002239441.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002239442.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002239443.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002239444.1 identified by similarity to SP:P75839; match to protein family HMM PF04239 YP_002239445.1 identified by similarity to SP:P75838; match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_002239446.1 identified by similarity to SP:P0AC23; match to protein family HMM PF01226; match to protein family HMM TIGR00790 YP_002239447.1 identified by similarity to SP:P09373; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002239448.1 activates pyruvate formate-lyase 1 under anaerobic conditions YP_002239449.1 Similar to Escherichia coli ycaD; identified by match to protein family HMM PF07690 YP_002239450.1 identified by Glimmer3 YP_002239451.1 identified by similarity to SP:P18777; match to protein family HMM PF04976 YP_002239452.1 identified by similarity to SP:P18776; match to protein family HMM PF00037; match to protein family HMM TIGR02951 YP_002239453.1 identified by similarity to SP:P18775; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR02166 YP_002239454.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002239455.1 identified by similarity to SP:P0AAZ4; match to protein family HMM PF00004 YP_002239456.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_002239457.1 identified by similarity to SP:P46889; match to protein family HMM PF01580 YP_002239458.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_002239459.1 identified by Glimmer3 YP_002239460.1 catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding YP_002239461.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_002239462.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_002239463.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_002239464.1 identified by Glimmer3 YP_002239465.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002239466.1 ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates YP_002239467.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_002239468.1 identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381 YP_002239469.1 with MacA is involved in the export of macrolide YP_002239470.1 confers macrolide resistance via active drug efflux YP_002239471.1 identified by similarity to GB:ABG68906.1 YP_002239472.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_002239473.1 identified by match to protein family HMM PF03956 YP_002239474.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002239475.1 identified by similarity to SP:P75824; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_002239476.1 identified by match to protein family HMM PF07681 YP_002239477.1 catalyzes the formation of acetate from pyruvate YP_002239478.1 low- specificity; catalyzes the formation of acetaldehyde and glycine from L-threonine; acts on L-threonine, L-allo-threonine, L-threo-phenylserine, and L-erythro-phenylserine YP_002239479.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368 YP_002239480.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002239481.1 identified by similarity to SP:P75820; match to protein family HMM PF01510 YP_002239482.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002239483.1 identified by match to protein family HMM PF07338 YP_002239484.1 induced during stationary phase and by acivicin (a glutamine analog); regulated by Lrp and RpoS YP_002239485.1 With ArtMQJI transports arginine across the inner membrane YP_002239486.1 identified by similarity to SP:P30859; match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_002239487.1 with ArtPMJI transports arginine across the inner membrane YP_002239488.1 with ArtPQJI acts to transport arginine across the inner membrane YP_002239489.1 identified by similarity to SP:P30860; match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_002239490.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002239491.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002239492.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_002239494.1 identified by similarity to SP:P0AFL1; match to protein family HMM PF00528 YP_002239495.1 identified by similarity to SP:P31135; match to protein family HMM PF00528 YP_002239496.1 part of the PotFGHI ATP-dependent putrescine transporter YP_002239497.1 identified by similarity to SP:P31133; match to protein family HMM PF01547 YP_002239498.1 identified by similarity to GB:AAL19812.1 YP_002239499.1 identified by similarity to SP:P0C0U4; match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768 YP_002239500.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds YP_002239501.1 YbjC; located in the same operon as the nfsA gene; member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress; induced by paraquat; regulated by SoxS; unknown function YP_002239502.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase YP_002239504.1 Similar to Escherichia coli ybjL; identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625 YP_002239505.1 identified by Glimmer3 YP_002239506.1 Similar to Escherichia coli ybjK; identified by match to protein family HMM PF00440 YP_002239507.1 Similar to Escherichia coli ybjJ; identified by match to protein family HMM PF07690 YP_002239508.1 identified by similarity to SP:P75809; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002239509.1 synonym cmr; identified by similarity to SP:P0AEY8; match to protein family HMM PF07690 YP_002239510.1 Similar to Escherichia coli ybjG; identified by similarity to SP:P75806; match to protein family HMM PF01569 YP_002239511.1 identified by similarity to SP:P0ACK5; match to protein family HMM PF00455; match to protein family HMM PF08220 YP_002239512.1 penicillin-binding protein 6a; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains YP_002239513.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002239514.1 identified by similarity to SP:P75804; match to protein family HMM PF07995 YP_002239515.1 BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing YP_002239516.1 identified by match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882 YP_002239517.1 identified by similarity to GB:CAH21657.1 YP_002239518.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_002239519.1 identified by Glimmer3 YP_002239520.1 identified by similarity to SP:P75799; match to protein family HMM PF00528 YP_002239521.1 identified by similarity to SP:P75798; match to protein family HMM PF00528 YP_002239522.1 identified by similarity to SP:P75797; match to protein family HMM PF00496 YP_002239523.1 with GsiBCD is involved in glutathione import; GsiA contains 2 ATP-binding domains YP_002239524.1 identified by similarity to SP:P37595; match to protein family HMM PF01112 YP_002239525.1 is involved in the formation of active molybdenum cofactor and the chelation of molybdenum YP_002239526.1 ATP-dependent adenylate transferase transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_002239527.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002239528.1 identified by similarity to SP:P75793; match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_002239529.1 identified by similarity to SP:P75792; match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002239530.1 identified by match to protein family HMM PF07350 YP_002239531.1 identified by match to protein family HMM PF00532 YP_002239532.1 identified by similarity to SP:P0AA78; match to protein family HMM PF07690 YP_002239533.1 identified by match to protein family HMM PF01055 YP_002239534.1 Similar to Escherichia coli ybiT; identified by match to protein family HMM PF00005 YP_002239535.1 identified by similarity to GB:CAG73105.1 YP_002239536.1 identified by similarity to SP:P0AAX8; match to protein family HMM PF03734 YP_002239537.1 identified by Glimmer3 YP_002239538.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002239539.1 identified by match to protein family HMM PF00232 YP_002239540.1 identified by match to protein family HMM PF00248 YP_002239541.1 Similar to Escherichia coli ybiR; identified by match to protein family HMM PF03600 YP_002239542.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present YP_002239544.1 identified by match to protein family HMM PF00884 YP_002239545.1 OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains YP_002239546.1 identified by similarity to SP:P0AA67; match to protein family HMM PF00892 YP_002239547.1 binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage YP_002239548.1 similar to periplasmic-binding component of ABC transporters YP_002239549.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_002239550.1 similar to ATP-binding component of ABC transporters YP_002239551.1 Similar to Escherichia coli ybiO; identified by match to protein family HMM PF00924 YP_002239552.1 Similar to Escherichia coli ybiN; identified by similarity to SP:P75782; match to protein family HMM PF05971 YP_002239553.1 identified by similarity to GB:ABI73453.1 YP_002239554.1 identified by match to protein family HMM PF07338 YP_002239555.1 identified by match to protein family HMM PF01258 YP_002239556.1 Similar to Escherichia coli ybiJ; identified by similarity to SP:P0AAX5; match to protein family HMM PF07338 YP_002239557.1 identified by match to protein family HMM PF02885 YP_002239558.1 helicase involved in DNA repair and perhaps also replication YP_002239559.1 this helicase is not essential cell growth YP_002239560.1 identified by Glimmer3 YP_002239561.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002239562.1 identified by match to protein family HMM PF00456 YP_002239563.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239564.1 identified by match to protein family HMM PF07690 YP_002239565.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239566.1 Similar to Escherichia coli ybiH; identified by match to protein family HMM PF00440; match to protein family HMM PF09209 YP_002239567.1 Similar to Escherichia coli ybhG; identified by match to protein family HMM PF00529 YP_002239568.1 Similar to Escherichia coli ybhF; identified by match to protein family HMM PF00005 YP_002239569.1 Similar to Escherichia coli ybhS; identified by match to protein family HMM PF01061 YP_002239570.1 Similar to Escherichia coli ybhR; identified by match to protein family HMM PF01061 YP_002239572.1 Similar to Escherichia coli ybhP; identified by match to protein family HMM PF03372 YP_002239573.1 identified by similarity to SP:P0AA84; match to protein family HMM PF00614 YP_002239575.1 identified by match to protein family HMM PF02371 YP_002239576.1 identified by match to protein family HMM PF01027 YP_002239577.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin YP_002239578.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002239579.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_002239580.1 identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667 YP_002239581.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_002239582.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002239583.1 with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division YP_002239584.1 response regulator in two-component regulatory system with BasS YP_002239585.1 identified by similarity to SP:P30844; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002239586.1 identified by Glimmer3 YP_002239587.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002239588.1 identified by Glimmer3 YP_002239589.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002239590.1 methyltransferase; acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA, a biotin precursor; member of the bio operon (bioABFCD); in Escherichia coli, bioC-null mutants require biotin for growth YP_002239591.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_002239592.1 identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_002239593.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002239594.1 YbhB; similar to rat and human kinase inhibitory proteins YP_002239595.1 identified by match to protein family HMM PF00324 YP_002239596.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002239597.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002239598.1 identified by similarity to SP:P12380; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_002239599.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002239600.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002239601.1 outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family YP_002239602.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002239603.1 identified by match to protein family HMM PF00582 YP_002239604.1 identified by match to protein family HMM TIGR01730 YP_002239605.1 identified by match to protein family HMM PF00873 YP_002239607.1 identified by similarity to GB:AAW85649.1 YP_002239608.1 identified by Glimmer3 YP_002239609.1 identified by Glimmer3 YP_002239611.1 identified by match to protein family HMM PF00196 YP_002239612.1 identified by similarity to SP:P33358; match to protein family HMM PF00376 YP_002239613.1 Similar to Escherichia coli ycgF; identified by match to protein family HMM PF00563; match to protein family HMM PF04940 YP_002239614.1 identified by similarity to GB:AAN80075.1 YP_002239615.1 identified by Glimmer3 YP_002239617.1 catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate YP_002239618.1 YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily YP_002239619.1 Part of the ABC transporter complex modABC involved in molybdenum import YP_002239620.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_002239621.1 with ModCB is involved in the high-affinity transport of molybdate YP_002239622.1 Similar to Escherichia coli ybhT; identified by similarity to SP:P0AAX2 YP_002239623.1 represses the modABCD operon and activates the moaABCD and napFDAGHBC operons YP_002239624.1 contains 2 ATP-binding cassettes; involved in the transport of molybdenum YP_002239625.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002239626.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P YP_002239627.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_002239628.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose YP_002239629.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002239630.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002239631.1 Similar to Escherichia coli ybgS; identified by similarity to SP:P0AAV7 YP_002239632.1 involved in zinc efflux across the cytoplasmic membrane YP_002239633.1 identified by similarity to SP:P24520; match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002239634.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002239635.1 identified by Glimmer3 YP_002239636.1 periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity YP_002239637.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802 YP_002239638.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_002239639.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins YP_002239640.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins YP_002239641.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins YP_002239642.1 identified by Glimmer3 YP_002239643.1 identified by match to protein family HMM TIGR02112 YP_002239644.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_002239645.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002239646.1 identified by match to protein family HMM PF01654 YP_002239647.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002239648.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002239649.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002239650.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002239651.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002239652.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002239653.1 identified by match to protein family HMM TIGR02968 YP_002239654.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970 YP_002239655.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_002239656.1 5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity YP_002239657.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002239658.1 Similar to Escherichia coli ybgL; identified by match to protein family HMM PF03746 YP_002239659.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_002239660.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_002239661.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002239662.1 Similar to Escherichia coli ybgH; identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002239663.1 UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent YP_002239664.1 identified by similarity to GB:AAN79258.1 YP_002239665.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002239666.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002239667.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_002239668.1 sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein YP_002239669.1 identified by similarity to SP:P21866; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002239671.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002239672.1 negative modulator of the initiation of chromosome replication YP_002239673.1 Similar to Escherichia coli ybfF; identified by similarity to SP:P75736; match to protein family HMM PF00561; match to protein family HMM PF07819 YP_002239674.1 Similar to Escherichia coli ybfE; identified by match to protein family HMM PF01402 YP_002239675.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002239676.1 negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer YP_002239677.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239678.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica YP_002239679.1 identified by similarity to SP:P05853; match to protein family HMM PF00037; match to protein family HMM TIGR02484 YP_002239680.1 Similarity to Klebsiella pneumoniae citH; identified by similarity to SP:P07661; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_002239681.1 Similar to Escherichia coli ybfN YP_002239682.1 Similar to Escherichia coli ybfM; identified by match to protein family HMM PF03573 YP_002239683.1 identified by Glimmer3 YP_002239684.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002239685.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002239686.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002239687.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate YP_002239688.1 identified by similarity to SP:P0AF20; match to protein family HMM PF00480 YP_002239689.1 identified by similarity to SP:P0AF24; match to protein family HMM PF00702; match to protein family HMM TIGR01460 YP_002239690.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_002239691.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002239692.1 identified by match to protein family HMM PF02562 YP_002239693.1 Similar to Escherichia coli ybeY; identified by similarity to SP:P0A899; match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002239694.1 identified by similarity to SP:P0A2L3; match to protein family HMM PF00571; match to protein family HMM PF03471 YP_002239695.1 Transfers the fatty acyl group on membrane lipoproteins YP_002239696.1 identified by similarity to SP:P37902; match to protein family HMM PF00497 YP_002239697.1 identified by similarity to SP:P0AER3; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002239698.1 identified by similarity to SP:P0AER5; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002239699.1 identified by similarity to SP:P0AAG3; match to protein family HMM PF00005 YP_002239700.1 identified by match to protein family HMM PF03865; match to protein family HMM PF08479 YP_002239701.1 identified by match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_002239702.1 identified by similarity to SP:P0AAT9; match to protein family HMM PF07295 YP_002239703.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002239704.1 identified by match to protein family HMM PF04390 YP_002239705.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002239706.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002239707.1 identified by similarity to SP:P52086; match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_002239708.1 identified by similarity to SP:P0AAT8; match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002239709.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002239710.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423 YP_002239711.1 identified by similarity to SP:P0ABG7; match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_002239712.1 identified by similarity to SP:P10100; match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413 YP_002239713.1 penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors YP_002239714.1 identified by similarity to SP:P0A8J4; match to protein family HMM PF04359 YP_002239715.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214 YP_002239716.1 Similar to Escherichia coli ybeF; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239717.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002239718.1 TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002239719.1 identified by match to protein family HMM PF00795 YP_002239720.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002239721.1 member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator YP_002239722.1 catalyzes the transfer of palmitate to lipid A YP_002239723.1 responsible for the transport of C4-dicarboxylates during anaerobic growth YP_002239724.1 identified by similarity to SP:P21338 YP_002239725.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation YP_002239726.1 identified by similarity to SP:P39177; match to protein family HMM PF00582 YP_002239727.1 identified by similarity to SP:P35340; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140 YP_002239728.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate YP_002239729.1 identified by similarity to SP:P77202 YP_002239730.1 Similar to Escherichia coli ybdO; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239731.1 identified by similarity to GB:AAM53133.1; match to protein family HMM PF01507 YP_002239732.1 identified by similarity to GB:AAM53134.1; match to protein family HMM PF02195 YP_002239733.1 catalyzes the transfer of an amino moiety YP_002239734.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01691 YP_002239735.1 identified by match to protein family HMM PF03079 YP_002239736.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568 YP_002239737.1 identified by Glimmer3 YP_002239738.1 identified by match to protein family HMM PF00532 YP_002239739.1 identified by match to protein family HMM PF00005 YP_002239740.1 identified by match to protein family HMM PF02653 YP_002239741.1 identified by match to protein family HMM PF02653 YP_002239742.1 identified by match to protein family HMM PF00294 YP_002239743.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002239744.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002239745.1 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway YP_002239746.1 identified by match to protein family HMM PF02133 YP_002239747.1 identified by match to protein family HMM PF02954; match to protein family HMM PF07905 YP_002239748.1 identified by similarity to SP:P25524; match to protein family HMM PF07969 YP_002239749.1 identified by match to protein family HMM PF00532 YP_002239750.1 identified by match to protein family HMM PF00459 YP_002239751.1 identified by match to protein family HMM PF07690 YP_002239752.1 identified by match to protein family HMM PF00328 YP_002239753.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524 YP_002239754.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002239755.1 identified by similarity to GB:CAG74314.1 YP_002239757.1 identified by match to protein family HMM PF02653 YP_002239758.1 identified by match to protein family HMM PF00005 YP_002239759.1 member of the iron-containing alcohol dehydrogenase family; unknown function YP_002239760.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002239761.1 identified by match to protein family HMM PF05016 YP_002239762.1 identified by match to protein family HMM PF01381 YP_002239763.1 Similar to Escherichia coli ybdD; identified by similarity to SP:P0AAT1; match to protein family HMM PF04328 YP_002239764.1 identified by similarity to SP:P15078; match to protein family HMM PF02554 YP_002239765.1 identified by Glimmer3 YP_002239766.1 identified by Glimmer3 YP_002239767.1 Similar to Escherichia coli ybdB; identified by similarity to SP:P0A8Y8; match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002239768.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin YP_002239769.1 identified by similarity to SP:P0ADI4; match to protein family HMM PF00550; match to protein family HMM PF00857 YP_002239770.1 bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate YP_002239771.1 identified by similarity to SP:P0AEJ2; match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_002239772.1 with FepCDG is involved in the transport of ferric enterobactin YP_002239773.1 protein p43; inner membrane protein that exports enterobactin to the periplasmic space; member of the major facilitator superfamily (MFS) of transporters YP_002239774.1 with FepBCG is involved in the transport of ferric enterobactin YP_002239775.1 with FepBCD is involved in the transport of ferric enterobactin YP_002239776.1 with FepBDE is involved in the transport of ferric enterobactin YP_002239777.1 with EntB, EntD, and EntE forms the multienzyme complex enterobactin synthase; EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin YP_002239778.1 Similar to Escherichia coli ybdZ; identified by similarity to SP:P18393; match to protein family HMM PF03621 YP_002239779.1 identified by similarity to SP:P13039; match to protein family HMM PF00756 YP_002239780.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space YP_002239781.1 identified by similarity to SP:P19925; match to protein family HMM PF01648 YP_002239782.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002239783.1 identified by match to protein family HMM PF00456 YP_002239784.1 identified by match to protein family HMM PF04198 YP_002239785.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002239786.1 identified by match to protein family HMM PF00532 YP_002239788.1 identified by match to protein family HMM PF00005 YP_002239789.1 identified by match to protein family HMM PF02653 YP_002239790.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239791.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239792.1 identified by match to protein family HMM PF02798 YP_002239793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002239794.1 identified by match to protein family HMM PF00924 YP_002239795.1 inactivates vertebrate C-type lysozyme YP_002239796.1 proton-motive-force-driven choline transporter YP_002239797.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_002239798.1 catalyzes the formation of betaine from betaine aldehyde YP_002239799.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_002239801.1 identified by similarity to GB:AAN68539.1; match to protein family HMM PF08348 YP_002239802.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002239803.1 identified by Glimmer3 YP_002239804.1 identified by match to protein family HMM PF06004 YP_002239805.1 identified by match to protein family HMM PF00583 YP_002239806.1 identified by match to protein family HMM PF00496 YP_002239807.1 identified by match to protein family HMM PF00528 YP_002239808.1 identified by match to protein family HMM PF00528 YP_002239809.1 identified by match to protein family HMM PF00005 YP_002239810.1 identified by match to protein family HMM PF00005 YP_002239811.1 identified by similarity to SP:Q9APM5; match to protein family HMM PF00202 YP_002239812.1 identified by similarity to SP:Q9KWN1; match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002239813.1 identified by match to protein family HMM PF00005 YP_002239814.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002239815.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002239816.1 identified by match to protein family HMM PF00497 YP_002239817.1 identified by match to protein family HMM PF00392 YP_002239818.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002239819.1 identified by match to protein family HMM PF00892 YP_002239820.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01879 YP_002239821.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002239822.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002239823.1 identified by match to protein family HMM PF00528 YP_002239824.1 identified by match to protein family HMM PF00528 YP_002239825.1 identified by match to protein family HMM PF00496 YP_002239826.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_002239828.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002239829.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002239830.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002239831.1 Similar to Escherichia coli ybdJ; identified by match to protein family HMM PF06643 YP_002239832.1 identified by similarity to SP:Q48413; match to protein family HMM PF00165 YP_002239833.1 identified by similarity to PRF:1613275A; match to protein family HMM PF00753 YP_002239834.1 identified by match to protein family HMM PF00440 YP_002239835.1 identified by similarity to GB:AAV78047.1; match to protein family HMM PF04237 YP_002239836.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive YP_002239837.1 identified by match to protein family HMM PF01381 YP_002239838.1 identified by similarity to GB:CAI79521.1; match to protein family HMM PF05973 YP_002239840.1 identified by similarity to GB:AAG04652.1 YP_002239841.1 identified by match to protein family HMM PF07690 YP_002239842.1 Similar to Escherichia coli ybdG; identified by match to protein family HMM PF00924 YP_002239843.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002239845.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002239846.1 identified by similarity to SP:P42416; match to protein family HMM PF01261; match to protein family HMM PF07582 YP_002239847.1 Similar to Escherichia coli yegT; identified by match to protein family HMM PF03825; match to protein family HMM PF07690 YP_002239848.1 identified by similarity to SP:P24207; match to protein family HMM PF00324 YP_002239849.1 identified by similarity to SP:Q05202; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; match to protein family HMM TIGR03304 YP_002239851.1 identified by similarity to SP:P80668; match to protein family HMM PF00171 YP_002239852.1 identified by match to protein family HMM PF01266 YP_002239853.1 identified by match to protein family HMM PF05899 YP_002239854.1 identified by match to protein family HMM PF00324 YP_002239855.1 identified by similarity to GB:BAD88604.1 YP_002239856.1 identified by match to protein family HMM PF00850 YP_002239857.1 identified by match to protein family HMM PF07690 YP_002239858.1 identified by similarity to SP:P54794; match to protein family HMM PF00196 YP_002239859.1 identified by Glimmer3 YP_002239860.1 identified by similarity to SP:P54795; match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002239861.1 identified by similarity to SP:P54796 YP_002239862.1 identified by match to protein family HMM PF00248 YP_002239863.1 identified by match to protein family HMM PF00497 YP_002239864.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002239866.1 identified by similarity to GB:AAN65684.1 YP_002239867.1 identified by similarity to GB:ABA26579.1 YP_002239868.1 identified by Glimmer3 YP_002239869.1 identified by match to protein family HMM PF01497 YP_002239870.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002239871.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_002239872.1 identified by match to protein family HMM PF00529 YP_002239873.1 identified by similarity to GB:BAC62822.1 YP_002239874.1 identified by Glimmer3 YP_002239875.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least YP_002239876.1 identified by similarity to SP:P27218; match to protein family HMM PF02264 YP_002239877.1 identified by similarity to SP:P27219; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00852; match to protein family HMM TIGR01996 YP_002239878.1 identified by similarity to SP:P27217; match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002239879.1 identified by similarity to SP:P37076; match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR02417 YP_002239880.1 identified by Glimmer3 YP_002239881.1 identified by match to protein family HMM PF02653 YP_002239882.1 identified by match to protein family HMM PF00005 YP_002239883.1 identified by match to protein family HMM PF00532 YP_002239885.1 identified by similarity to SP:O68965; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002239886.1 identified by Glimmer3 YP_002239887.1 identified by match to protein family HMM PF01408 YP_002239888.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002239889.1 identified by similarity to SP:P49304; match to protein family HMM PF01261 YP_002239890.1 identified by Glimmer3 YP_002239891.1 identified by Glimmer3 YP_002239892.1 identified by Glimmer3 YP_002239893.1 class II; inducible; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; induced by high temperature, anaerobiosis, and low pH; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002239894.1 Similar to Escherichia coli yjdL; identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002239895.1 identified by similarity to SP:P52095; match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_002239896.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein YP_002239897.1 regulates the cadBA operon YP_002239898.1 identified by match to protein family HMM PF07338 YP_002239899.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_002239900.1 identified by match to protein family HMM PF00583 YP_002239901.1 identified by similarity to SP:P08189; match to protein family HMM PF00419 YP_002239902.1 identified by match to protein family HMM PF00577 YP_002239903.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002239904.1 identified by match to protein family HMM PF00419 YP_002239905.1 identified by match to protein family HMM PF00196 YP_002239906.1 identified by Glimmer3 YP_002239907.1 identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798 YP_002239908.1 identified by Glimmer3 YP_002239909.1 identified by Glimmer3 YP_002239910.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962 YP_002239911.1 identified by Glimmer3 YP_002239912.1 identified by Glimmer3 YP_002239913.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_002239914.1 identified by match to protein family HMM PF03865; match to protein family HMM PF08479 YP_002239916.1 identified by Glimmer3 YP_002239917.1 identified by similarity to GB:AAU37355.1 YP_002239918.1 identified by similarity to GB:ABE29300.1 YP_002239919.1 identified by Glimmer3 YP_002239920.1 identified by similarity to GB:CAE15757.1 YP_002239921.1 identified by similarity to GB:CAE15758.1 YP_002239922.1 identified by Glimmer3 YP_002239923.1 identified by similarity to SP:P03037 YP_002239924.1 identified by similarity to SP:P03049; match to protein family HMM PF03869 YP_002239925.1 identified by similarity to GB:AAZ25537.1 YP_002239926.1 identified by Glimmer3 YP_002239927.1 identified by similarity to GB:BAE74037.1 YP_002239929.1 identified by similarity to GB:BAE74035.1 YP_002239930.1 identified by similarity to GB:CAE15765.1 YP_002239931.1 identified by match to protein family HMM PF01464 YP_002239932.1 identified by similarity to GB:AAT37734.2 YP_002239933.1 identified by similarity to GB:CAE15767.1 YP_002239934.1 identified by similarity to GB:CAE15768.1 YP_002239935.1 identified by similarity to GB:CAE15769.1 YP_002239936.1 identified by similarity to GB:CAE15770.1 YP_002239937.1 identified by similarity to GB:BAE74030.1 YP_002239938.1 identified by similarity to GB:ABF15011.1 YP_002239939.1 identified by similarity to GB:CAE15773.1 YP_002239940.1 identified by similarity to GB:BAE74492.1 YP_002239941.1 identified by similarity to GB:BAE74491.1 YP_002239942.1 identified by similarity to GB:CAE15776.1 YP_002239944.1 identified by match to protein family HMM PF04233 YP_002239945.1 identified by similarity to GB:CAE15779.1 YP_002239946.1 identified by similarity to GB:CAJ42225.1; match to protein family HMM TIGR01630 YP_002239947.1 identified by similarity to GB:CAL20738.1 YP_002239948.1 identified by similarity to GB:CAC90914.1 YP_002239949.1 identified by Glimmer3 YP_002239950.1 identified by similarity to GB:AAL89454.1 YP_002239951.1 identified by similarity to GB:CAD05586.1 YP_002239952.1 identified by similarity to SP:P27359; match to protein family HMM PF00959 YP_002239953.1 identified by similarity to GB:AAC45168.1 YP_002239956.1 identified by match to protein family HMM PF05766 YP_002239957.1 identified by similarity to SP:P55798; match to protein family HMM PF00149 YP_002239958.1 DLP12 prophage; conserved protein similar to phage 82 and lambda proteins YP_002239959.1 identified by match to protein family HMM PF05772 YP_002239960.1 identified by similarity to SP:P0ABS8; match to protein family HMM PF06440 YP_002239961.1 identified by Glimmer3 YP_002239962.1 identified by similarity to GB:CAD91795.1 YP_002239964.1 identified by Glimmer3 YP_002239965.1 identified by Glimmer3 YP_002239966.1 identified by similarity to SP:Q03546 YP_002239967.1 identified by Glimmer3 YP_002239968.1 identified by Glimmer3 YP_002239969.1 identified by Glimmer3 YP_002239970.1 identified by similarity to GB:AAG57237.1 YP_002239971.1 identified by match to protein family HMM PF01695 YP_002239972.1 identified by match to protein family HMM PF04492; match to protein family HMM TIGR01610 YP_002239973.1 identified by Glimmer3 YP_002239974.1 identified by Glimmer3 YP_002239975.1 identified by similarity to RF:NP_455500.1 YP_002239976.1 identified by similarity to SP:P03040 YP_002239977.1 identified by similarity to SP:P03034; match to protein family HMM PF00717; match to protein family HMM PF01381 YP_002239978.1 identified by Glimmer3 YP_002239979.1 identified by Glimmer3 YP_002239980.1 identified by Glimmer3 YP_002239981.1 identified by similarity to GB:CAE15307.1 YP_002239982.1 identified by Glimmer3 YP_002239983.1 identified by similarity to SP:P14112 YP_002239984.1 identified by similarity to GB:BAE74205.1 YP_002239985.1 identified by Glimmer3 YP_002239986.1 identified by similarity to GB:AAV78305.1 YP_002239987.1 identified by Glimmer3 YP_002239988.1 identified by similarity to GB:AAF75227.1; match to protein family HMM PF05063 YP_002239989.1 identified by match to protein family HMM PF00145 YP_002239990.1 identified by similarity to GB:BAB34229.1 YP_002239991.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02419 YP_002239993.1 identified by similarity to SP:P04889; match to protein family HMM TIGR01764 YP_002239994.1 identified by match to protein family HMM PF00589 YP_002239995.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002239996.1 identified by similarity to RF:NP_455131.1 YP_002239997.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002239998.1 identified by similarity to SP:P23869; match to protein family HMM PF00160 YP_002239999.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_002240001.1 identified by similarity to SP:P0AG18; match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002240002.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002240003.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_002240004.1 identified by similarity to GB:AAL19463.1 YP_002240005.1 identified by Glimmer3 YP_002240006.1 Similar to Escherichia coli ybbP; identified by match to protein family HMM PF02687 YP_002240007.1 identified by match to protein family HMM PF00005 YP_002240008.1 identified by similarity to SP:P0ADA1; match to protein family HMM PF00657 YP_002240009.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002240010.1 identified by similarity to SP:P77395; match to protein family HMM PF00085 YP_002240011.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_002240012.1 Similar to Escherichia coli ybbL; identified by match to protein family HMM PF00005 YP_002240013.1 identified by match to protein family HMM PF01145 YP_002240014.1 Similar to Escherichia coli ybbJ; identified by match to protein family HMM PF01957 YP_002240015.1 identified by similarity to SP:P0A9G4; match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044 YP_002240016.1 identified by similarity to SP:Q59385; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002240017.1 identified by match to protein family HMM PF07446 YP_002240018.1 identified by similarity to SP:P0AAR3; match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_002240019.1 catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides YP_002240020.1 identified by similarity to SP:P52067; match to protein family HMM PF07690 YP_002240021.1 YbaL; member of the CPA-2 family of antiporters; uncharacterized protein YP_002240022.1 identified by similarity to SP:P0AEW6; match to protein family HMM PF00294 YP_002240023.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002240024.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002240025.1 molecular chaperone YP_002240026.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002240027.1 identified by similarity to GB:AAZ90762.1; match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002240028.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002240029.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002240030.1 identified by match to protein family HMM PF04304 YP_002240031.1 PriC; protein involved in DNA replication; part of the primosome, a protein complex required to restart stalled replication forks; binds the complex formed by PriA, PriB and DNA; PriC-dependent primosome requires a gap to restart DNA replication; stimulates Rep activity at stalled forks YP_002240032.1 identified by similarity to RF:NP_455077.1 YP_002240033.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 YP_002240034.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS YP_002240035.1 regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine YP_002240036.1 identified by similarity to SP:P0AE06; match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_002240037.1 identified by similarity to GB:CAC35725.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_002240038.1 Similar to Escherichia coli ybaJ; identified by similarity to SP:P0AAR0 YP_002240039.1 with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins YP_002240040.1 identified by similarity to SP:P77791; match to protein family HMM PF00132 YP_002240041.1 Similar to Escherichia coli ylaC; identified by similarity to SP:P0AAS2 YP_002240042.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002240043.1 identified by match to protein family HMM PF00583 YP_002240044.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_002240045.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002240046.1 transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer YP_002240047.1 porin involved in the transport of maltose and maltodextrins YP_002240048.1 identified by match to protein family HMM PF00367 YP_002240049.1 identified by similarity to SP:P19668; match to protein family HMM PF02449; match to protein family HMM PF08532; match to protein family HMM PF08533 YP_002240050.1 identified by match to protein family HMM PF07745 YP_002240051.1 identified by match to protein family HMM PF00528 YP_002240052.1 identified by match to protein family HMM PF00528 YP_002240053.1 identified by match to protein family HMM PF01547 YP_002240054.1 identified by similarity to SP:Q01937; match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002240055.1 Similarity to Escherichia coli ylaB; identified by match to protein family HMM PF00563 YP_002240056.1 identified by similarity to SP:P64530; match to protein family HMM PF02583 YP_002240057.1 membrane protein conferring nickel and cobalt resistance YP_002240058.1 identified by match to protein family HMM PF02588 YP_002240059.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002240060.1 identified by Glimmer3 YP_002240061.1 identified by similarity to GB:CAG74678.1 YP_002240062.1 identified by Glimmer3 YP_002240063.1 identified by Glimmer3 YP_002240064.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_002240066.1 identified by match to protein family HMM PF02551; match to protein family HMM TIGR00189 YP_002240067.1 identified by similarity to SP:P69681; match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002240068.1 indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase nitrogen regulator I, and the absence of ammonia. YP_002240069.1 identified by Glimmer3 YP_002240070.1 identified by similarity to SP:P0AAG5; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002240071.1 identified by similarity to SP:P77265; match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002240072.1 Similar to Escherichia coli ybaO; identified by match to protein family HMM PF01037 YP_002240073.1 identified by match to protein family HMM PF00291 YP_002240074.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002240075.1 ybaE; identified by match to protein family HMM PF00496 YP_002240076.1 YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His YP_002240077.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002240078.1 Similar to Escherichia coli ybaV; identified by match to protein family HMM TIGR00426 YP_002240079.1 identified by similarity to SP:P0ADY1; match to protein family HMM PF00639; match to protein family HMM PF09312 YP_002240080.1 histone-like DNA-binding protein YP_002240081.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002240082.1 binds and unfolds substrates as part of the ClpXP protease YP_002240083.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002240084.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002240085.1 positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress YP_002240086.1 identified by Glimmer3 YP_002240087.1 identified by match to protein family HMM PF03923 YP_002240088.1 in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein YP_002240089.1 identified by similarity to SP:P0ABJ1; match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_002240090.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_002240091.1 identified by similarity to SP:P0ABJ3; match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_002240092.1 identified by similarity to SP:P0ABJ6; match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_002240093.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002240094.1 identified by Glimmer3 YP_002240095.1 identified by Glimmer3 YP_002240096.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002240097.1 identified by match to protein family HMM PF00899; match to protein family HMM PF01488; match to protein family HMM PF08501 YP_002240098.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_002240099.1 identified by similarity to GB:AAN68214.1; match to protein family HMM PF07978 YP_002240100.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01266 YP_002240101.1 identified by match to protein family HMM PF01261 YP_002240102.1 identified by similarity to SP:Q51955; match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002240103.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002240104.1 Similar to Escherichia coli yajR; identified by match to protein family HMM PF07690 YP_002240105.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002240106.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002240107.1 identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_002240108.1 identified by similarity to GB:ABF80274.1; match to protein family HMM PF08327 YP_002240109.1 Required for the synthesis of the thiazole moiety YP_002240110.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002240111.1 identified by similarity to SP:P22939; match to protein family HMM PF00348 YP_002240112.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002240113.1 identified by match to protein family HMM PF00248 YP_002240114.1 hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate YP_002240115.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_002240116.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002240117.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002240118.1 riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil YP_002240119.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002240120.1 Similar to Escherichia coli yajI; identified by similarity to SP:P46122 YP_002240121.1 identified by similarity to SP:P40786; match to protein family HMM PF03502 YP_002240122.1 identified by match to protein family HMM PF08279 YP_002240123.1 identified by match to protein family HMM PF00903 YP_002240124.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002240125.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002240126.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002240127.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002240128.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002240129.1 identified by Glimmer3 YP_002240130.1 Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP YP_002240131.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002240132.1 identified by Glimmer3 YP_002240133.1 identified by match to protein family HMM PF00359 YP_002240134.1 identified by match to protein family HMM PF02302 YP_002240135.1 identified by match to protein family HMM PF04215 YP_002240136.1 identified by match to protein family HMM PF00294 YP_002240137.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_002240138.1 identified by match to protein family HMM PF07969 YP_002240139.1 identified by match to protein family HMM PF03992 YP_002240140.1 identified by match to protein family HMM PF00857 YP_002240141.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240142.1 identified by similarity to SP:P21517; match to protein family HMM PF00128 YP_002240143.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation YP_002240144.1 identified by similarity to SP:P25185; match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002240145.1 membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB YP_002240146.1 two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB YP_002240147.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity YP_002240148.1 with SbcD cleaves DNA hairpin structures; also has 5' single-strand endonuclease activity YP_002240149.1 identified by similarity to SP:P23917; match to protein family HMM PF00480 YP_002240150.1 Required for efficient pilin antigenic variation YP_002240151.1 Similar to Escherichia coli yaiE; identified by similarity to SP:P0C040; match to protein family HMM PF06865 YP_002240152.1 identified by match to protein family HMM PF07302 YP_002240154.1 type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002240155.1 identified by similarity to GB:AAY39332.1 YP_002240156.1 identified by similarity to SP:Q3Z523; match to protein family HMM PF02639 YP_002240157.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002240158.1 identified by similarity to SP:P0AFM4; match to protein family HMM PF07769 YP_002240159.1 identified by similarity to SP:P00634; match to protein family HMM PF00245 YP_002240160.1 identified by similarity to RF:NP_454978.1 YP_002240161.1 identified by Glimmer3 YP_002240162.1 identified by match to protein family HMM PF07690 YP_002240163.1 identified by match to protein family HMM PF06904 YP_002240164.1 identified by similarity to SP:P0A6J8; match to protein family HMM PF01820; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF07478; match to protein family HMM TIGR01205 YP_002240165.1 identified by similarity to GB:AAZ87131.1 YP_002240166.1 identified by similarity to SP:P0AAP7 YP_002240167.1 identified by match to protein family HMM PF07759 YP_002240168.1 in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope YP_002240169.1 identified by match to protein family HMM PF00857 YP_002240170.1 this protein has no known enzymatic function YP_002240171.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002240172.1 identified by Glimmer3 YP_002240173.1 identified by match to protein family HMM PF01553 YP_002240174.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers YP_002240175.1 identified by similarity to SP:Q47539; match to protein family HMM PF00528 YP_002240176.1 Part of the ABC transporter complex tauABC involved in taurine import YP_002240177.1 identified by similarity to SP:Q47537; match to protein family HMM PF04069; match to protein family HMM TIGR01729 YP_002240178.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines YP_002240179.1 identified by similarity to SP:Q47689; match to protein family HMM PF00324 YP_002240180.1 identified by Glimmer3 YP_002240181.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_002240182.1 identified by match to protein family HMM PF06751 YP_002240183.1 identified by match to protein family HMM PF05985 YP_002240184.1 identified by match to protein family HMM PF01094 YP_002240185.1 identified by match to protein family HMM PF02653 YP_002240186.1 identified by match to protein family HMM PF02653 YP_002240187.1 identified by match to protein family HMM PF00005 YP_002240188.1 identified by match to protein family HMM PF00005 YP_002240189.1 identified by Glimmer3 YP_002240190.1 identified by Glimmer3 YP_002240191.1 identified by match to protein family HMM PF00497 YP_002240192.1 identified by match to protein family HMM PF00005 YP_002240193.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002240194.1 identified by match to protein family HMM PF00528 YP_002240195.1 Similar to Escherichia coli yagV; identified by similarity to SP:P77263 YP_002240199.1 identified by similarity to GB:AAK01671.1 YP_002240200.1 identified by similarity to GB:AAK01670.1; match to protein family HMM PF00196 YP_002240201.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_002240202.1 identified by match to protein family HMM TIGR01098; match to protein family HMM TIGR03431 YP_002240203.1 identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002240204.1 transporter organization differs from that of phn operon in Escherichia coli; identified by similarity to SP:P16683; match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002240205.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_002240206.1 identified by match to protein family HMM PF00892 YP_002240207.1 identified by match to protein family HMM PF00877 YP_002240208.1 identified by similarity to SP:P30704; match to protein family HMM PF00267 YP_002240209.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002240210.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002240211.1 identified by Glimmer3 YP_002240212.1 identified by Glimmer3 YP_002240213.1 identified by Glimmer3 YP_002240214.1 identified by Glimmer3 YP_002240215.1 identified by Glimmer3 YP_002240216.1 identified by Glimmer3 YP_002240217.1 identified by Glimmer3 YP_002240218.1 identified by Glimmer3 YP_002240219.1 identified by Glimmer3 YP_002240220.1 identified by Glimmer3 YP_002240222.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002240223.1 identified by Glimmer3 YP_002240224.1 identified by match to protein family HMM PF00589 YP_002240225.1 identified by match to protein family HMM PF00589 YP_002240227.1 identified by match to protein family HMM PF05930 YP_002240228.1 identified by Glimmer3 YP_002240230.1 identified by match to protein family HMM PF03432 YP_002240231.1 identified by similarity to GB:AAX68253.1 YP_002240233.1 identified by similarity to GB:BAB36932.1 YP_002240234.1 identified by similarity to GB:BAB36933.1 YP_002240235.1 identified by match to protein family HMM PF00589 YP_002240236.1 identified by match to protein family HMM PF00589 YP_002240237.1 identified by Glimmer3 YP_002240238.1 identified by Glimmer3 YP_002240239.1 identified by match to protein family HMM PF04055 YP_002240240.1 identified by match to protein family HMM PF04055 YP_002240241.1 identified by similarity to GB:BAC61787.1 YP_002240242.1 identified by similarity to GB:ABE59725.1 YP_002240243.1 identified by similarity to GB:AAZ34178.1 YP_002240244.1 identified by match to protein family HMM PF01609 YP_002240245.1 identified by similarity to GB:BAC46138.1 YP_002240246.1 identified by match to protein family HMM PF02195 YP_002240247.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002240248.1 identified by match to protein family HMM PF00528 YP_002240249.1 identified by match to protein family HMM TIGR01409 YP_002240250.1 identified by match to protein family HMM PF00005 YP_002240251.1 identified by similarity to GB:CAK14759.1 YP_002240252.1 identified by match to protein family HMM PF02627 YP_002240253.1 identified by match to protein family HMM PF00165 YP_002240254.1 identified by Glimmer3 YP_002240255.1 identified by match to protein family HMM PF00165 YP_002240256.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02041 YP_002240257.1 identified by match to protein family HMM PF00117 YP_002240258.1 identified by similarity to GB:AAC44880.1; match to protein family HMM PF00196 YP_002240259.1 identified by similarity to GB:AAA21744.1; match to protein family HMM PF00676 YP_002240260.1 identified by similarity to SP:O34591; match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002240261.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002240262.1 identified by similarity to GB:AAB40885.1; match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_002240263.1 identified by similarity to GB:AAK80424.1 YP_002240264.1 identified by similarity to SP:P58315; match to protein family HMM PF01791 YP_002240265.1 identified by match to protein family HMM PF04309 YP_002240266.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002240267.1 identified by similarity to SP:P51831; match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002240268.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002240269.1 identified by similarity to SP:P69831; match to protein family HMM PF03611 YP_002240270.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002240271.1 identified by match to protein family HMM PF08241 YP_002240272.1 identified by similarity to GB:ABD18718.1 YP_002240273.1 in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP; the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases; forms homotetramers in solution YP_002240274.1 catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate YP_002240275.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent YP_002240276.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002240277.1 identified by similarity to SP:P25527; match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_002240278.1 regulator of gab gene expression YP_002240279.1 involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS YP_002240280.1 forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation YP_002240281.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_002240282.1 identified by similarity to SP:P15288; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002240283.1 identified by match to protein family HMM PF00583 YP_002240284.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002240285.1 identified by match to protein family HMM PF03009 YP_002240286.1 identified by similarity to RF:NP_406705.1; match to protein family HMM PF04400 YP_002240287.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002240288.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. YP_002240289.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_002240290.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002240291.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002240292.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002240293.1 identified by match to protein family HMM PF06104 YP_002240294.1 identified by match to protein family HMM PF00310 YP_002240295.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_002240296.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_002240297.1 identified by match to protein family HMM PF00795 YP_002240298.1 identified by Glimmer3 YP_002240300.1 identified by match to protein family HMM PF01810 YP_002240301.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240302.1 3'-5' exonuclease of DNA polymerase III YP_002240303.1 identified by match to protein family HMM PF00075 YP_002240304.1 identified by match to protein family HMM PF08241 YP_002240305.1 catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione; plays an important role in cellular detoxification using glutathione YP_002240306.1 catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall YP_002240307.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002240308.1 Similar to Escherichia coli yafD; identified by match to protein family HMM PF03372 YP_002240309.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002240310.1 Similar to Escherichia coli yafC; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240311.1 catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid YP_002240312.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_002240313.1 part of the metNIQ transport system for methionine YP_002240314.1 part of the MetNIQ methionine uptake system YP_002240315.1 identified by similarity to SP:P28635; match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_002240316.1 identified by similarity to SP:P69411 YP_002240317.1 identified by match to protein family HMM PF01980; match to protein family HMM TIGR00104 YP_002240318.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002240319.1 identified by similarity to GB:ABB60443.1 YP_002240320.1 identified by similarity to SP:P40710; match to protein family HMM PF04170 YP_002240321.1 identified by match to protein family HMM PF00472 YP_002240322.1 Similar to Escherichia coli yaeQ; identified by similarity to SP:P0AA98; match to protein family HMM PF07152 YP_002240323.1 Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination YP_002240324.1 identified by similarity to SP:P52097; match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002240325.1 identified by match to protein family HMM PF00903 YP_002240326.1 identified by similarity to SP:P52095; match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_002240327.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002240328.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_002240329.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002240330.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_002240331.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002240332.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002240333.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_002240334.1 identified by similarity to SP:P31519; match to protein family HMM PF03938 YP_002240335.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins YP_002240336.1 catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response YP_002240337.1 catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate YP_002240338.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002240339.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002240340.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002240341.1 Catalyzes the phosphorylation of UMP to UDP YP_002240342.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002240343.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002240344.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002240345.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_002240346.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002240347.1 Similar to Escherichia coli yaeH; identified by similarity to SP:Q3Z5J4 YP_002240348.1 regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization YP_002240349.1 protease Do; required at high temperature; degrades damaged proteins YP_002240350.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate YP_002240351.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002240352.1 solute binding component of the vitamin B12 transport system BtuCDF YP_002240353.1 identified by match to protein family HMM PF03458 YP_002240354.1 Similar to Escherichia coli yadR; identified by similarity to SP:P0ACC3; match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_002240355.1 Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation YP_002240356.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002240357.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_002240358.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter YP_002240359.1 involved with the transport of ferrichrome across the outer membrane; binds the ferrichrome-iron ligand and interacts with the TonB protein YP_002240360.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell YP_002240361.1 identified by Glimmer3 YP_002240362.1 identified by similarity to SP:P20440; match to protein family HMM TIGR01004 YP_002240364.1 identified by similarity to SP:P07206; match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02103 YP_002240365.1 identified by Glimmer3 YP_002240366.1 identified by similarity to SP:P15643; match to protein family HMM PF00595; match to protein family HMM TIGR01713 YP_002240367.1 identified by similarity to SP:P15644; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_002240368.1 identified by similarity to SP:P15645; match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_002240369.1 identified by similarity to GB:AAA25128.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_002240370.1 identified by similarity to SP:P15746; match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_002240371.1 identified by similarity to SP:P15747; match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_002240372.1 identified by similarity to SP:P15748; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_002240373.1 identified by similarity to SP:P15749; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532 YP_002240374.1 identified by similarity to SP:P31706; match to protein family HMM PF03934 YP_002240375.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_002240376.1 identified by similarity to SP:P15752; match to protein family HMM PF04612 YP_002240377.1 identified by similarity to SP:P15753; match to protein family HMM PF01203 YP_002240378.1 identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002240379.1 similar in sequence to the ATP-dependent RNA helicase HrpA YP_002240380.1 identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002240381.1 Regulatory factor involved in maltose metabolism YP_002240382.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_002240383.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_002240384.1 Polymerase that creates the 3' poly(A) tail found in some mRNA's YP_002240385.1 catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine and ATP YP_002240386.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002240387.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002240388.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002240389.1 identified by match to protein family HMM PF01522 YP_002240390.1 identified by match to protein family HMM PF03610 YP_002240391.1 Similar to Escherichia coli yadH; identified by match to protein family HMM PF01061 YP_002240392.1 Similar to Escherichia coli yadG; identified by match to protein family HMM PF00005 YP_002240393.1 catalyzes the interconversion of bicarbonate and carbon dioxide YP_002240394.1 identified by similarity to SP:P0A9M2; match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002240395.1 identified by Glimmer3 YP_002240396.1 identified by similarity to SP:P15877; match to protein family HMM PF01011; match to protein family HMM TIGR03074 YP_002240397.1 laccase; copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification YP_002240399.1 identified by similarity to GB:CAE12707.1 YP_002240400.1 identified by match to protein family HMM PF00254 YP_002240401.1 identified by Glimmer3 YP_002240402.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002240403.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_002240404.1 Similar to Escherichia coli yacL; identified by similarity to SP:P0A8E5; match to protein family HMM PF06062 YP_002240405.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002240406.1 identified by Glimmer3 YP_002240407.1 identified by similarity to GB:AAL19121.1 YP_002240408.1 identified by similarity to RF:NP_454770.1 YP_002240410.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002240411.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains YP_002240412.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_002240413.1 activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex YP_002240414.1 identified by Glimmer3 YP_002240415.1 identified by similarity to SP:P15993; match to protein family HMM PF00324 YP_002240416.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00792 YP_002240417.1 identified by similarity to SP:P82594; match to protein family HMM PF04616 YP_002240418.1 involved in regulation of beta-lactamase; signaling protein YP_002240419.1 identified by similarity to SP:P13016; match to protein family HMM PF01510 YP_002240420.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002240421.1 identified by similarity to GB:AAX12396.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002240422.1 Homologous to PilB of Pseudomonas aeruginosa; identified by similarity to SP:P36645; match to protein family HMM PF00437 YP_002240423.1 Homologous to PilC of Pseudomonas aeruginosa; identified by similarity to SP:P36646; match to protein family HMM PF00482 YP_002240424.1 catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate YP_002240425.1 identified by Glimmer3 YP_002240426.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002240427.1 Similar to Escherichia coli yacF; identified by similarity to SP:P36680; match to protein family HMM PF07072 YP_002240428.1 identified by similarity to SP:P0A8H8; match to protein family HMM PF03884 YP_002240429.1 identified by similarity to SP:P08337; match to protein family HMM PF00293; match to protein family HMM TIGR00586 YP_002240430.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002240431.1 secM translational pause allows for the initiation of secA translation YP_002240432.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_002240433.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002240434.1 ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane YP_002240435.1 involved in septum formation YP_002240436.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002240437.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002240438.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002240439.1 integral membrane protein involved in stabilizing FstZ ring during cell division YP_002240440.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002240441.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002240442.1 identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002240443.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002240444.1 identified by similarity to SP:P0AD68; match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002240445.1 membrane bound cell division protein at septum containing leucine zipper motif YP_002240446.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002240447.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002240448.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism YP_002240449.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002240450.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive YP_002240451.1 activator for leuABCD operon; member of LysR family of transcriptional activators YP_002240453.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002240454.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002240455.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002240456.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002240457.1 identified by similarity to SP:P32382; match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF01134 YP_002240458.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002240459.1 Similar to Escherichia coli ydiM; identified by match to protein family HMM PF07690 YP_002240460.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093 YP_002240461.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240462.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002240463.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00899 YP_002240464.1 identified by similarity to GB:AAX64010.1 YP_002240465.1 activates sgrS under glucose-phosphate stress conditions YP_002240466.1 part of the thiamine and TPP transport system tbpA-thiPQ YP_002240467.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine YP_002240468.1 with TbpA and ThiP is part of the thiamine and TPP transport system YP_002240469.1 identified by similarity to SP:P30149; match to protein family HMM PF09335 YP_002240470.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose YP_002240471.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_002240472.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_002240473.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_002240474.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C YP_002240475.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA YP_002240476.1 catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs YP_002240477.1 identified by similarity to SP:P0A6G5; match to protein family HMM PF03802; match to protein family HMM TIGR03124 YP_002240478.1 identified by similarity to GB:AAL60462.1; match to protein family HMM PF03390 YP_002240479.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518 YP_002240480.1 identified by match to protein family HMM PF00072 YP_002240481.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_002240482.1 determines N-hexane tolerance and is involved in outer membrane permeability YP_002240483.1 Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB YP_002240484.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_002240485.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002240486.1 protein associated with Co2+ and Mg2+ efflux YP_002240487.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_002240488.1 catalyzes the reduction of dihydrofolate to tetrahydrofolate YP_002240489.1 transport system that facilitates potassium-efflux YP_002240490.1 Required for full activity of KefC, a potassium-proton antiporter YP_002240491.1 identified by match to protein family HMM PF07690 YP_002240492.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002240493.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002240494.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate YP_002240495.1 identified by similarity to SP:P39208; match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_002240496.1 identified by similarity to SP:P0AF97; match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002240497.1 identified by match to protein family HMM PF06004 YP_002240498.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002240499.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002240500.1 identified by similarity to GB:AAX63965.1 YP_002240501.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002240502.1 identified by similarity to SP:P77231; match to protein family HMM PF01874; match to protein family HMM TIGR03125 YP_002240503.1 identified by match to protein family HMM PF04223; match to protein family HMM TIGR01584 YP_002240504.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR01588 YP_002240505.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate YP_002240506.1 identified by similarity to SP:P77390; match to protein family HMM PF00583; match to protein family HMM PF08218; match to protein family HMM TIGR00124; match to protein family HMM TIGR00125 YP_002240507.1 identified by similarity to SP:P31602; match to protein family HMM PF03390; match to protein family HMM TIGR00783 YP_002240508.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide YP_002240509.1 catalyzes the formation of pyruvate from oxaloacetate YP_002240510.1 identified by similarity to SP:P13156; match to protein family HMM PF03977; match to protein family HMM TIGR01109 YP_002240511.1 Synonym: dpiB; identified by similarity to SP:P52687; match to protein family HMM PF02518 YP_002240512.1 identified by similarity to SP:P52688; match to protein family HMM PF00072 YP_002240514.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240515.1 identified by match to protein family HMM PF05656 YP_002240516.1 identified by match to protein family HMM PF00330; match to protein family HMM PF00694 YP_002240517.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM PF06808; match to protein family HMM TIGR00785 YP_002240518.1 identified by Glimmer3 YP_002240519.1 Similar to Escherichia coli ybhL; identified by similarity to SP:P75763; match to protein family HMM PF00939; match to protein family HMM PF03600; match to protein family HMM TIGR00785 YP_002240520.1 identified by similarity to GB:CAB87567.1; match to protein family HMM PF04303 YP_002240521.1 Similar to Escherichia coli ybhD; identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240522.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides YP_002240523.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002240524.1 identified by match to protein family HMM PF00254 YP_002240525.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002240526.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002240527.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002240528.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002240529.1 identified by Glimmer3 YP_002240530.1 Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC YP_002240531.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_002240532.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002240533.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002240534.1 Similar to Escherichia coli yaaI; identified by similarity to SP:P28696 YP_002240535.1 Similar to Escherichia coli yaaW; identified by similarity to SP:P75617; match to protein family HMM PF03667 YP_002240536.1 identified by match to protein family HMM PF01184 YP_002240537.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002240538.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_002240539.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_002240540.1 Similar to Escherichia coli yaaJ; identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002240541.1 identified by similarity to SP:Q8ZS17; match to protein family HMM PF03883 YP_002240543.1 identified by Glimmer3 YP_002240544.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002240545.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002240546.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_002240547.1 involved in threonine biosynthesis; controls the expression of the thrLABC operon YP_002240548.1 member of the SPOUT superfamily of methyltransferases YP_002240549.1 identified by similarity to SP:P0A9Q1; match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002240550.1 identified by similarity to SP:P08369; match to protein family HMM PF06123 YP_002240551.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation YP_002240552.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation YP_002240553.1 identified by match to protein family HMM PF05981 YP_002240554.1 identified by similarity to SP:P0ACI0; match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002240555.1 catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate YP_002240556.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_002240557.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription YP_002240558.1 catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan YP_002240559.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_002240560.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide YP_002240561.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002240562.1 catalyzes the formation of serine from O-phosphoserine YP_002240563.1 identified by similarity to SP:P0AGC8 YP_002240564.1 Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins YP_002240565.1 identified by similarity to SP:Q59482; match to protein family HMM PF01048; match to protein family HMM TIGR00107 YP_002240566.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002240567.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_002240568.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002240569.1 identified by match to protein family HMM PF01026 YP_002240570.1 identified by match to protein family HMM PF01734 YP_002240571.1 identified by match to protein family HMM PF07043 YP_002240572.1 identified by similarity to SP:P0AFH8; match to protein family HMM PF04972 YP_002240573.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_002240574.1 manganese-dependent 5'-nucleotidase; specific for 5'-UMP, 5'-dUMP, and 5'-dTMP; member of haloacid dehalogenase (HAD)-like hydrolase superfamily YP_002240575.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18 YP_002240576.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_002240577.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit YP_002240578.1 identified by similarity to SP:P55914; match to protein family HMM PF07256 YP_002240579.1 identified by Glimmer3 YP_002240580.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002240581.1 identified by similarity to SP:P39405; match to protein family HMM PF06276 YP_002240582.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002240583.1 identified by match to protein family HMM PF04073 YP_002240584.1 regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin YP_002240585.1 Similar to Escherichia coli yjjQ; identified by match to protein family HMM PF00196 YP_002240586.1 identified by similarity to GB:CAB64665.1; match to protein family HMM PF00165 YP_002240587.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_002240588.1 identified by match to protein family HMM PF06738 YP_002240589.1 Similar to Escherichia coli yjjB; identified by similarity to GB:AAN83862.1 YP_002240590.1 This protein is required for primosome-dependent normal DNA replication; it is also involved in inducing stable DNA replication during SOS response. It forms, in concert with dnaB protein and other prepriming proteins dnaC, N, N', N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N' YP_002240591.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_002240592.1 identified by similarity to SP:P18390 YP_002240593.1 catalyzes the transfer of phosphoglycerol to the glucan backbone YP_002240594.1 identified by match to protein family HMM PF01380 YP_002240595.1 identified by match to protein family HMM PF03613 YP_002240596.1 identified by match to protein family HMM PF03609 YP_002240597.1 identified by match to protein family HMM PF03830 YP_002240598.1 identified by match to protein family HMM PF03610 YP_002240599.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874 YP_002240600.1 catalyzes the formation of D-tagaturonate from D-altronate YP_002240601.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002240602.1 Similar to Escherichia coli yjjM; identified by match to protein family HMM PF07729 YP_002240603.1 Similar to Escherichia coli yjjL; identified by match to protein family HMM PF07690 YP_002240604.1 identified by match to protein family HMM PF00583 YP_002240605.1 identified by match to protein family HMM PF00583 YP_002240606.1 identified by match to protein family HMM PF02615 YP_002240607.1 identified by match to protein family HMM PF00324 YP_002240608.1 identified by similarity to SP:Q56694; match to protein family HMM PF00171 YP_002240609.1 identified by match to protein family HMM PF00701 YP_002240610.1 identified by match to protein family HMM PF00165; match to protein family HMM PF08448 YP_002240611.1 identified by match to protein family HMM PF05544 YP_002240612.1 identified by match to protein family HMM PF01266 YP_002240613.1 identified by match to protein family HMM PF00111 YP_002240614.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002240615.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337 YP_002240616.1 identified by Glimmer3 YP_002240617.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305 YP_002240618.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303 YP_002240619.1 identified by similarity to GB:CAA86041.1; match to protein family HMM PF00171; match to protein family HMM TIGR02299 YP_002240620.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298 YP_002240621.1 identified by similarity to SP:Q05354; match to protein family HMM PF02962 YP_002240622.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312 YP_002240623.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311 YP_002240624.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02332 YP_002240625.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883; match to protein family HMM TIGR02297 YP_002240626.1 identified by similarity to SP:Q57501; match to protein family HMM PF01613; match to protein family HMM TIGR02296 YP_002240627.1 identified by match to protein family HMM PF01609 YP_002240628.1 identified by Glimmer3 YP_002240629.1 identified by Glimmer3 YP_002240630.1 identified by match to protein family HMM PF02554 YP_002240631.1 identified by match to protein family HMM PF04328 YP_002240632.1 Similar to Escherichia coli yjiA; identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002240633.1 identified by match to protein family HMM PF07437 YP_002240635.1 identified by match to protein family HMM PF00171 YP_002240636.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 YP_002240637.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_002240638.1 identified by match to protein family HMM PF01810 YP_002240639.1 identified by match to protein family HMM PF04286 YP_002240640.1 identified by similarity to SP:P39386; match to protein family HMM PF07690 YP_002240641.1 identified by similarity to RF:NP_993369.1 YP_002240642.1 identified by match to protein family HMM PF06050 YP_002240643.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_002240644.1 identified by similarity to GB:BAB38719.1 YP_002240645.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002240646.1 Similar to Escherichia coli yjiG; identified by match to protein family HMM PF07670 YP_002240647.1 identified by match to protein family HMM PF07670 YP_002240648.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240650.1 identified by match to protein family HMM PF00529 YP_002240651.1 identified by match to protein family HMM PF01047 YP_002240652.1 Similar to Escherichia coli yjiS; identified by similarity to SP:P39390; match to protein family HMM PF06568 YP_002240653.1 Similar to Escherichia coli yjiR; identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002240654.1 identified by similarity to RF:NP_463388.1 YP_002240655.1 identified by match to protein family HMM PF04365 YP_002240656.1 identified by similarity to SP:Q03377; match to protein family HMM PF00903 YP_002240657.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240658.1 identified by similarity to SP:P16083; match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002240659.1 identified by match to protein family HMM PF00440 YP_002240660.1 identified by match to protein family HMM PF00486 YP_002240661.1 identified by similarity to GB:CAD42080.1 YP_002240662.1 identified by similarity to SP:P0A1C7; match to protein family HMM PF00936 YP_002240663.1 identified by match to protein family HMM PF00936 YP_002240664.1 identified by similarity to RF:NP_456595.1; match to protein family HMM PF00936 YP_002240665.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518 YP_002240666.1 identified by similarity to GB:AAD39013.1; match to protein family HMM PF03319 YP_002240667.1 identified by match to protein family HMM PF00465; match to protein family HMM PF01761 YP_002240668.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_002240669.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_002240670.1 identified by similarity to SP:P0A1C7; match to protein family HMM PF00936 YP_002240671.1 identified by match to protein family HMM PF06130 YP_002240672.1 identified by similarity to GB:CAD42069.1 YP_002240673.1 identified by match to protein family HMM PF00893 YP_002240674.1 identified by match to protein family HMM PF00893 YP_002240675.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002240676.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002240677.1 Similar to Escherichia coli yhiL; identified by match to protein family HMM PF00529 YP_002240678.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_002240679.1 Similar to Escherichia coli yhhJ; identified by match to protein family HMM PF01061 YP_002240680.1 identified by Glimmer3 YP_002240681.1 identified by similarity to GB:AAV76697.1 YP_002240682.1 Similar to Escherichia coli ycfD; identified by similarity to SP:P27431; match to protein family HMM PF08007 YP_002240683.1 identified by similarity to SP:P77485; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_002240684.1 response regulator in two-component regulatory system with CusS; regulates the copper efflux system YP_002240685.1 with CusA, CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver YP_002240686.1 identified by similarity to SP:P77214 YP_002240687.1 with CusA, CusC and CusF is part of a cation efflux system that mediates resistance to copper and silver YP_002240688.1 identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_002240689.1 identified by match to protein family HMM PF06961 YP_002240690.1 lipocalin; globomycin-sensitive outer membrane lipoprotein YP_002240691.1 identified by match to protein family HMM PF00376 YP_002240692.1 identified by similarity to GB:ABE57826.1 YP_002240693.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659 YP_002240694.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_002240695.1 identified by similarity to GB:CAG75114.1; match to protein family HMM PF07103 YP_002240696.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002240698.1 identified by similarity to GB:AAF94283.1 YP_002240700.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349 YP_002240701.1 identified by similarity to SP:P31242 YP_002240702.1 identified by Glimmer3 YP_002240703.1 catalyzes the interconversion of D-xylose to D-xylulose YP_002240704.1 identified by similarity to GB:AAQ62863.1; match to protein family HMM TIGR00792 YP_002240705.1 identified by similarity to GB:AAQ62864.1; match to protein family HMM PF00251; match to protein family HMM PF04616 YP_002240706.1 identified by match to protein family HMM PF01844 YP_002240707.1 identified by similarity to GB:ABB68774.1 YP_002240708.1 identified by Glimmer3 YP_002240709.1 identified by match to protein family HMM PF05638; match to protein family HMM TIGR03344 YP_002240710.1 identified by match to protein family HMM PF00614 YP_002240711.1 identified by similarity to GB:AAC03167.1; match to protein family HMM PF00665 YP_002240712.1 identified by match to protein family HMM PF01527 YP_002240713.1 identified by Glimmer3 YP_002240714.1 identified by Glimmer3 YP_002240715.1 identified by similarity to RF:NP_994845.1 YP_002240717.1 identified by Glimmer3 YP_002240718.1 identified by Glimmer3 YP_002240719.1 identified by Glimmer3 YP_002240720.1 Similar to Escherichia coli yeeU; identified by similarity to SP:P76364; match to protein family HMM PF06154 YP_002240721.1 identified by similarity to SP:Q9XB42 YP_002240722.1 identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608 YP_002240723.1 Similar to Escherichia coli yfjX; identified by match to protein family HMM PF03230 YP_002240724.1 Similar to Escherichia coli yafZ; identified by similarity to GB:CAD33785.1; match to protein family HMM PF06067 YP_002240725.1 identified by similarity to SP:P52135 YP_002240726.1 identified by Glimmer3 YP_002240727.1 identified by similarity to SP:P52133 YP_002240728.1 identified by match to protein family HMM PF01926 YP_002240729.1 identified by similarity to GB:ABJ03907.1 YP_002240730.1 identified by match to protein family HMM PF00313 YP_002240731.1 identified by similarity to SP:P20471; match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_002240732.1 identified by similarity to GB:AAN81595.1 YP_002240733.1 identified by Glimmer3 YP_002240734.1 identified by similarity to GB:AAL80772.1 YP_002240735.1 identified by match to protein family HMM PF03279; match to protein family HMM TIGR02207 YP_002240736.1 identified by Glimmer3 YP_002240737.1 identified by similarity to GB:CAD33737.1 YP_002240738.1 identified by match to protein family HMM PF05930 YP_002240739.1 identified by similarity to GB:AAV80049.1; match to protein family HMM PF06353 YP_002240740.1 identified by match to protein family HMM PF00903 YP_002240741.1 identified by match to protein family HMM PF00583 YP_002240742.1 identified by match to protein family HMM PF07081 YP_002240743.1 identified by match to protein family HMM PF07690 YP_002240744.1 identified by similarity to GB:ABM93636.1 YP_002240745.1 identified by similarity to RF:NP_463360.1 YP_002240746.1 identified by match to protein family HMM PF05175; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002240747.1 identified by similarity to GB:AAK80424.1 YP_002240748.1 identified by similarity to GB:ABE74728.1; match to protein family HMM PF01863 YP_002240749.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_002240750.1 identified by match to protein family HMM PF01661 YP_002240751.1 identified by similarity to GB:CAK13243.1 YP_002240752.1 identified by match to protein family HMM PF01420 YP_002240753.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 YP_002240754.1 identified by similarity to GB:CAE17274.1 YP_002240755.1 identified by match to protein family HMM PF00589 YP_002240756.1 identified by match to protein family HMM PF00484 YP_002240757.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002240758.1 identified by match to protein family HMM PF00107; match to protein family HMM PF01262; match to protein family HMM PF08240 YP_002240759.1 identified by match to protein family HMM PF00528 YP_002240760.1 identified by match to protein family HMM PF00528 YP_002240761.1 identified by similarity to GB:AAN52089.1; match to protein family HMM PF00149 YP_002240762.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002240763.1 identified by match to protein family HMM PF01547 YP_002240764.1 identified by similarity to SP:P42416; match to protein family HMM PF01261 YP_002240765.1 identified by similarity to SP:P42418; match to protein family HMM PF01261 YP_002240766.1 identified by similarity to SP:P26935; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002240767.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002240768.1 identified by Glimmer3 YP_002240769.1 identified by Glimmer3 YP_002240770.1 identified by match to protein family HMM PF00294 YP_002240771.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002240772.1 identified by match to protein family HMM PF06845 YP_002240773.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_002240774.1 identified by match to protein family HMM PF01261 YP_002240775.1 Similar to Escherichia coli yjgR; identified by similarity to SP:P39342; match to protein family HMM PF05872 YP_002240776.1 identified by match to protein family HMM PF03739 YP_002240777.1 identified by match to protein family HMM PF03739 YP_002240778.1 identified by Glimmer3 YP_002240779.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002240780.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_002240781.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002240782.1 Similar to Escherichia coli yjgM; identified by similarity to SP:P39337; match to protein family HMM PF00583 YP_002240783.1 identified by match to protein family HMM PF06175 YP_002240784.1 identified by similarity to PDB:1NXI_A; match to protein family HMM PF06877 YP_002240785.1 identified by similarity to SP:P04391; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_002240786.1 identified by similarity to SP:P0AF97; match to protein family HMM PF04074; match to protein family HMM TIGR00022 YP_002240787.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002240788.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_002240789.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002240790.1 P-type ATPase involved in magnesium influx YP_002240791.1 regulates genes involved in trehalose metabolism; binds the intermediate trehalose-6-phosphate; binds a dimer; regulates treBC operon YP_002240792.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_002240793.1 identified by similarity to SP:P28904; match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002240794.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002240795.1 identified by Glimmer3 YP_002240796.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions YP_002240797.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002240798.1 identified by similarity to GB:CAD73313.1 YP_002240799.1 identified by similarity to GB:CAD06907.1; match to protein family HMM PF07071 YP_002240800.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437 YP_002240801.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002240803.1 identified by similarity to GB:AAL23262.1 YP_002240804.1 identified by similarity to RF:NP_458858.1 YP_002240805.1 identified by match to protein family HMM PF00874 YP_002240806.1 identified by Glimmer3 YP_002240807.1 identified by similarity to SP:P0ABE7; match to protein family HMM PF07361 YP_002240808.1 protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD YP_002240809.1 Similar to Escherichia coli yjgA; identified by similarity to SP:Q3YUB7; match to protein family HMM PF04751 YP_002240810.1 identified by Glimmer3 YP_002240811.1 identified by similarity to GB:ABG62998.1 YP_002240812.1 identified by match to protein family HMM PF00583 YP_002240813.1 identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081 YP_002240814.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002240815.1 membrane component of a sugar ABC transporter system YP_002240816.1 Similar to Escherichia coli ytfT; identified by similarity to SP:P39328; match to protein family HMM PF02653 YP_002240817.1 Similar to Escherichia coli ytfR; identified by similarity to SP:Q6BEX0; match to protein family HMM PF00005 YP_002240818.1 Similar to Escherichia coli ytfQ; identified by similarity to SP:P39325; match to protein family HMM PF00532 YP_002240819.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002240821.1 Similar to Escherichia coli ytfP; identified by similarity to SP:P0AE51; match to protein family HMM PF03674 YP_002240822.1 Similar to Escherichia coli ytfN; identified by similarity to SP:P39321; match to protein family HMM PF04357 YP_002240823.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_002240824.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_002240825.1 identified by similarity to GB:AAL19707.1 YP_002240827.1 identified by match to protein family HMM PF00701 YP_002240828.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002240829.1 identified by match to protein family HMM PF06178 YP_002240830.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002240831.1 identified by match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882 YP_002240832.1 identified by match to protein family HMM PF02449; match to protein family HMM PF08532 YP_002240833.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose YP_002240834.1 identified by match to protein family HMM PF06526 YP_002240835.1 identified by match to protein family HMM TIGR01626 YP_002240836.1 catalyzes the formation of AMP from adenosine-3',5'-bisphosphate YP_002240837.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_002240838.1 Similar to Escherichia coli ytfH; identified by match to protein family HMM PF01638 YP_002240839.1 identified by match to protein family HMM PF05368 YP_002240840.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002240841.1 identified by similarity to SP:P39314; match to protein family HMM PF00892 YP_002240842.1 Involved in anaerobic NO protection and iron metabolism YP_002240843.1 involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine YP_002240844.1 FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides YP_002240845.1 identified by similarity to SP:P44415; match to protein family HMM PF04225; match to protein family HMM PF08525 YP_002240846.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002240847.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002240848.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002240849.1 Similar to Escherichia coli yjfY; identified by similarity to SP:P0AF89; match to protein family HMM PF07338 YP_002240850.1 identified by match to protein family HMM PF07690 YP_002240851.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_002240852.1 UlaE; catalyzes the epimerization of L-ribulose-5-phosphate into L-xylulose-5-phosphate; part of the anaerobic L-ascorbate degradation pathway YP_002240853.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_002240854.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake YP_002240855.1 involved in the phosphorylation and transport of sugars across the cell membrane; protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar; IIC forms the translocation channel for the sugar uptake YP_002240856.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002240857.1 identified by similarity to SP:Q7CP92 YP_002240858.1 negative regulator of ulaG and ulaABCDEF YP_002240859.1 YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo YP_002240860.1 in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility YP_002240861.1 Similar to Escherichia coli yjfN; identified by similarity to SP:P0AF85; match to protein family HMM PF07338 YP_002240862.1 catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA YP_002240863.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_002240864.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs YP_002240865.1 negatively regulates the transcription of genes upregulated by nitrosative stress YP_002240866.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002240867.1 identified by similarity to SP:P0AF75 YP_002240868.1 identified by Glimmer3 YP_002240869.1 identified by similarity to RF:XP_583696.2 YP_002240870.1 with HflK inhibits proteolysis of lambda cII protein by FtsH YP_002240871.1 with HflC inhibits proteolysis of lambda cII protein by FtsH YP_002240872.1 involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein YP_002240873.1 Stimulates the elongation of poly(A) tails YP_002240874.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002240875.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002240876.1 identified by similarity to SP:P26365; match to protein family HMM PF01520 YP_002240877.1 possibly involved in cell wall synthesis YP_002240878.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_002240879.1 identified by match to protein family HMM PF00037; match to protein family HMM PF08331; match to protein family HMM TIGR00276 YP_002240880.1 identified by similarity to SP:P30860; match to protein family HMM PF00497 YP_002240881.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_002240882.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002240883.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_002240884.1 Similar to Escherichia coli yjeP; identified by match to protein family HMM PF00924 YP_002240885.1 Similar to Escherichia coli yjeM; identified by match to protein family HMM PF00324 YP_002240886.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_002240887.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002240888.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002240889.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_002240890.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane YP_002240891.1 lipocalin; globomycin-sensitive outer membrane lipoprotein YP_002240892.1 identified by similarity to SP:P69937; match to protein family HMM PF00893 YP_002240893.1 identified by similarity to SP:P0ADB7; match to protein family HMM PF08085 YP_002240894.1 identified by similarity to SP:P56551; match to protein family HMM PF08085 YP_002240895.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002240896.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_002240897.1 identified by Glimmer3 YP_002240898.1 identified by match to protein family HMM PF01609 YP_002240899.1 identified by Glimmer3 YP_002240900.1 identified by Glimmer3 YP_002240901.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002240902.1 identified by match to protein family HMM PF00577 YP_002240903.1 identified by Glimmer3 YP_002240904.1 identified by Glimmer3 YP_002240905.1 identified by similarity to SP:Q9EXN6; match to protein family HMM PF00529 YP_002240906.1 identified by similarity to SP:Q9EXN5; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_002240908.1 Similar to Escherichia coli yjeI YP_002240909.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002240910.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002240911.1 identified by Glimmer3 YP_002240912.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function YP_002240913.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_002240914.1 catalyzes the formation of fumarate from aspartate YP_002240915.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_002240916.1 copper binding protein required for copper tolerance; involved in resistance toward heavy metals YP_002240917.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm YP_002240918.1 Similar to Escherichia coli yjdC YP_002240919.1 identified by match to protein family HMM PF06674 YP_002240921.1 identified by match to protein family HMM PF00196 YP_002240922.1 outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia YP_002240923.1 in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export YP_002240924.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_002240925.1 in Yersinia this gene is involved in biofilm formation and hemin adsorption YP_002240926.1 identified by match to protein family HMM PF01323 YP_002240927.1 identified by match to protein family HMM PF03741 YP_002240928.1 functional analog of DnaJ; co-chaperone with DnaK, molecular chaperone in an adaptive response to environmental stresses other than heat shock YP_002240929.1 with CpbA modulates the activity of the dnaK chaperone system; interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA YP_002240931.1 identified by similarity to SP:P11904; match to protein family HMM PF06406 YP_002240932.1 identified by similarity to SP:Q02581; match to protein family HMM TIGR00792 YP_002240933.1 identified by similarity to SP:P06720; match to protein family HMM PF02056 YP_002240934.1 identified by similarity to SP:P0ACH8; match to protein family HMM PF00165 YP_002240935.1 identified by similarity to SP:P40862; match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM PF08946; match to protein family HMM TIGR00883 YP_002240936.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002240937.1 identified by similarity to SP:P16681; match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002240938.1 may be involved in phosphonate uptake and biodegradation YP_002240939.1 identified by similarity to SP:P16685; match to protein family HMM PF06754; match to protein family HMM TIGR03293 YP_002240940.1 identified by match to protein family HMM PF05845; match to protein family HMM TIGR03292 YP_002240941.1 identified by match to protein family HMM PF05861 YP_002240942.1 identified by match to protein family HMM PF06007 YP_002240943.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_002240944.1 identified by similarity to SP:P16679; match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_002240945.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_002240946.1 identified by match to protein family HMM TIGR02322 YP_002240947.1 required for the use of phosphonates and phosphite as phosphorus sources YP_002240948.1 identified by Glimmer3 YP_002240949.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002240950.1 identified by match to protein family HMM PF00005 YP_002240951.1 identified by match to protein family HMM PF02653 YP_002240952.1 identified by match to protein family HMM PF00532 YP_002240953.1 identified by match to protein family HMM PF00294 YP_002240954.1 identified by similarity to GB:AAL59716.1; match to protein family HMM PF08843 YP_002240955.1 identified by similarity to GB:BAE46936.1 YP_002240956.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002240957.1 identified by Glimmer3 YP_002240958.1 Selenoprotein. identified by similarity to SP:P07658; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002240959.1 identified by match to protein family HMM PF08238 YP_002240960.1 carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system YP_002240961.1 identified by similarity to GB:AAX68068.1 YP_002240962.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002240963.1 identified by match to protein family HMM PF04341 YP_002240964.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_002240965.1 identified by match to protein family HMM PF00419 YP_002240966.1 identified by match to protein family HMM PF00419 YP_002240967.1 identified by match to protein family HMM PF00577 YP_002240968.1 identified by similarity to SP:P43661; match to protein family HMM PF00345; match to protein family HMM PF02753 YP_002240969.1 identified by similarity to SP:P08190; match to protein family HMM PF00419 YP_002240970.1 identified by Glimmer3 YP_002240971.1 identified by match to protein family HMM PF04172 YP_002240972.1 identified by match to protein family HMM PF03788 YP_002240973.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240974.1 Similar to Escherichia coli yjcE; identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_002240975.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002240976.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_002240977.1 identified by similarity to SP:P0ACS2; match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR01950 YP_002240978.1 regulates genes involved in response to oxidative stress YP_002240979.1 Similar to Escherichia coli yjcC; identified by match to protein family HMM PF00563 YP_002240981.1 identified by match to protein family HMM PF00528 YP_002240982.1 identified by match to protein family HMM PF00528 YP_002240983.1 identified by match to protein family HMM PF01547 YP_002240984.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002240985.1 identified by match to protein family HMM PF00753; match to protein family HMM TIGR02651 YP_002240986.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002240987.1 identified by similarity to SP:P0ADG4; match to protein family HMM PF00459 YP_002240988.1 identified by similarity to GB:AAL20042.1 YP_002240989.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002240990.1 identified by match to protein family HMM PF08450 YP_002240991.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins YP_002240992.1 identified by Glimmer3 YP_002240993.1 identified by Glimmer3 YP_002240994.1 identified by match to protein family HMM PF07519 YP_002240995.1 identified by match to protein family HMM PF00165 YP_002240996.1 identified by Glimmer3 YP_002240997.1 Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space YP_002240998.1 identified by Glimmer3 YP_002240999.1 identified by match to protein family HMM PF01464 YP_002241000.1 binds to single stranded DNA and PriA helcase facilitate replication restart YP_002241001.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002241002.1 identified by match to protein family HMM PF04237 YP_002241003.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_002241004.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity YP_002241005.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_002241006.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_002241007.1 unwinds double stranded DNA YP_002241008.1 identified by similarity to SP:P28304; match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002241009.1 coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia YP_002241010.1 identified by similarity to SP:P32695; match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_002241011.1 identified by match to protein family HMM PF07883 YP_002241012.1 Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB YP_002241013.1 unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential YP_002241014.1 identified by Glimmer3 YP_002241015.1 identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002241016.1 Represses a number of genes involved in the response to DNA damage YP_002241017.1 identified by similarity to SP:P0ABN1; match to protein family HMM PF01219 YP_002241018.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_002241019.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_002241020.1 catalyzes the formation of 4-hydroxybenzoate from chorismate YP_002241021.1 identified by similarity to SP:P03841; match to protein family HMM PF07148 YP_002241022.1 porin involved in the transport of maltose and maltodextrins YP_002241023.1 with malEFG is involved in import of maltose/maltodextrin YP_002241024.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis YP_002241025.1 with MalKGE is involved in maltose transport into the cell YP_002241026.1 with MalKFE is involved in the transport of maltose into the cell YP_002241027.1 identified by similarity to SP:P0A7D0; match to protein family HMM PF06146 YP_002241028.1 identified by match to protein family HMM PF00583 YP_002241029.1 identified by match to protein family HMM PF00132 YP_002241030.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002241031.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_002241032.1 identified by match to protein family HMM PF01758 YP_002241033.1 identified by similarity to GB:AAL22757.1 YP_002241034.1 identified by similarity to GB:AAO59116.1; match to protein family HMM PF05973 YP_002241035.1 identified by similarity to RF:NP_463059.1 YP_002241036.1 catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA YP_002241037.1 identified by similarity to SP:P37078; match to protein family HMM PF04198 YP_002241038.1 Converts D-sorbitol-dphosphate to D-fructose-6-phosphate YP_002241039.1 identified by similarity to SP:P37080; match to protein family HMM PF03610; match to protein family HMM TIGR00824 YP_002241040.1 identified by similarity to SP:P37081; match to protein family HMM PF03830; match to protein family HMM TIGR00854 YP_002241041.1 identified by similarity to SP:P37082; match to protein family HMM PF03609; match to protein family HMM TIGR00822 YP_002241042.1 identified by similarity to SP:P37083; match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_002241043.1 identified by similarity to SP:P37084; match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002241044.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002241045.1 Similar to Escherichia coli yjbB; identified by match to protein family HMM PF02690; match to protein family HMM TIGR00704; match to protein family HMM TIGR01013 YP_002241046.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_002241047.1 regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase YP_002241048.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_002241049.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_002241050.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002241051.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002241052.1 identified by match to protein family HMM PF00583 YP_002241053.1 involved in de novo purine biosynthesis YP_002241054.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002241055.1 DNA-binding response regulator in two-component regulatory system with ZraS; response regulator/sigma54 interaction protein YP_002241056.1 identified by similarity to SP:P37461; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002241057.1 identified by similarity to SP:P0AAA9 YP_002241058.1 identified by match to protein family HMM PF07356 YP_002241059.1 histone-like DNA-binding protein YP_002241060.1 identified by similarity to SP:P32680; match to protein family HMM PF04222 YP_002241061.1 Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA; cleaves DNA containing urea residues, AP sites, base mismatches, insertion/deletion mismatches, flaps, and pseudo-Y structures YP_002241062.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002241063.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates YP_002241064.1 binds specifically to the major sigma factor sigma 70; active in stationary phase YP_002241065.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002241066.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate YP_002241067.1 identified by similarity to SP:P30138; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356 YP_002241068.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683 YP_002241069.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002241070.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_002241071.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002241072.1 identified by match to protein family HMM PF02302 YP_002241073.1 identified by similarity to SP:P69791; match to protein family HMM PF02255 YP_002241074.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters YP_002241075.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002241076.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002241077.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002241078.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002241079.1 identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169 YP_002241080.1 binds directly to 23S ribosomal RNA YP_002241081.1 Modulates Rho-dependent transcription termination YP_002241082.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002241083.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002241084.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_002241085.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_002241086.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002241087.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX YP_002241088.1 identified by similarity to SP:P0AFZ7; match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002241089.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002241090.1 catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters YP_002241091.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_002241092.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids YP_002241093.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin YP_002241094.1 catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol YP_002241095.1 identified by match to protein family HMM PF02357; match to protein family HMM TIGR01955 YP_002241096.1 magnesium dependent; not involved in the Sec-independent protein export system YP_002241097.1 with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane YP_002241098.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_002241099.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002241100.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_002241101.1 identified by similarity to SP:P0ADP8; match to protein family HMM PF06843 YP_002241102.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002241103.1 YigN; nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence; transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner YP_002241104.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway YP_002241105.1 identified by match to protein family HMM PF01738 YP_002241106.1 identified by similarity to SP:P25550; match to protein family HMM PF02810; match to protein family HMM PF04055 YP_002241107.1 identified by similarity to SP:P0ADM3; match to protein family HMM PF02656 YP_002241108.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002241109.1 identified by match to protein family HMM PF00884 YP_002241110.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002241111.1 identified by Glimmer3 YP_002241112.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002241113.1 Similar to Escherichia coli yigM; identified by match to protein family HMM PF00892; match to protein family HMM TIGR00950 YP_002241114.1 purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium YP_002241115.1 lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates YP_002241116.1 identified by similarity to SP:P0AG34; match to protein family HMM PF01810; match to protein family HMM TIGR00949 YP_002241117.1 identified by match to protein family HMM PF04754; match to protein family HMM TIGR01784 YP_002241118.1 identified by similarity to SP:P0AG38; match to protein family HMM PF01810; match to protein family HMM TIGR00949 YP_002241119.1 functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway YP_002241120.1 catalyzes the hydrolysis of phosphatidylcholine YP_002241121.1 Similar to Escherichia coli yigI; identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002241122.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_002241123.1 responsible for the influx of magnesium ions YP_002241124.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_002241125.1 YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function YP_002241126.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002241127.1 identified by similarity to SP:Q83IW8; match to protein family HMM PF04340 YP_002241128.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002241129.1 identified by similarity to SP:P0A1T6 YP_002241130.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_002241131.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_002241132.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002241133.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_002241134.1 identified by match to protein family HMM PF04375 YP_002241135.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM TIGR00540 YP_002241136.1 identified by Glimmer3 YP_002241137.1 uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function YP_002241138.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002241139.1 enterobacterial common antigen polymerase YP_002241140.1 catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis YP_002241141.1 identified by match to protein family HMM PF01943 YP_002241142.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis YP_002241143.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02382 YP_002241144.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_002241145.1 identified by similarity to SP:P27830; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002241146.1 catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid YP_002241147.1 identified by similarity to SP:P27828; match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002241148.1 Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein YP_002241149.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR02380 YP_002241150.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002241151.1 identified by similarity to SP:P0AA25; match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002241152.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_002241153.1 catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation YP_002241154.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002241155.1 identified by match to protein family HMM PF04909 YP_002241156.1 identified by Glimmer3 YP_002241157.1 identified by match to protein family HMM PF04474 YP_002241158.1 single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication YP_002241159.1 identified by similarity to SP:P0A9L5; match to protein family HMM PF00639 YP_002241160.1 identified by similarity to SP:P0A9L5; match to protein family HMM PF00639 YP_002241161.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002241162.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_002241163.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_002241164.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002241165.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002241166.1 identified by similarity to SP:P0ADG3 YP_002241167.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002241169.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_002241170.1 Similar to Escherichia coli yifE; identified by similarity to SP:P0ADN5; match to protein family HMM PF04219 YP_002241171.1 Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon YP_002241172.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002241173.1 involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space YP_002241174.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_002241175.1 Similar to Escherichia coli yijD; identified by similarity to SP:P0AF40; match to protein family HMM PF07226 YP_002241176.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_002241177.1 catalyzes the conversion of NADPH to NADH YP_002241178.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA YP_002241179.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002241180.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002241181.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002241182.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_002241183.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_002241184.1 Similar to Escherichia coli yodA; identified by similarity to SP:P76344 YP_002241185.1 Similar to Escherichia coli yijO; identified by match to protein family HMM PF00165 YP_002241186.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies YP_002241187.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_002241188.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor YP_002241189.1 identified by Glimmer3 YP_002241190.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002241191.1 identified by match to protein family HMM PF02627 YP_002241192.1 multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_002241193.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_002241194.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_002241195.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002241196.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002241197.1 negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins YP_002241198.1 identified by similarity to SP:P29131; match to protein family HMM PF05036; match to protein family HMM TIGR02223 YP_002241199.1 heat shock protein involved in degradation of misfolded proteins YP_002241200.1 heat shock protein involved in degradation of misfolded proteins YP_002241201.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002241202.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002241203.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002241204.1 member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers YP_002241205.1 repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA; CpxP is degraded by DegP protease especially in the presence of misfolded substrates YP_002241206.1 response regulator in two-component regulatory system with CpxA; part of the envelope stress response system YP_002241207.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors YP_002241208.1 Similar to Escherichia coli yiiM; identified by match to protein family HMM PF03473; match to protein family HMM PF03475 YP_002241209.1 SodA; manganese binding; only present under aerobic conditions; destroys free radicals YP_002241210.1 transports L-rhamnose and L-lyxose into the cell YP_002241211.1 identified by similarity to SP:P09378; match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002241212.1 activates the expression of the rhaBAD operon and rhaT gene YP_002241213.1 identified by Glimmer3 YP_002241214.1 catalyzes the ATP-dependent phosphorylation of rhamnulose YP_002241215.1 catalyzes the formation of L-rhamnulose from L-rhamnose YP_002241216.1 identified by Glimmer3 YP_002241217.1 identified by similarity to SP:P32169; match to protein family HMM PF00596; match to protein family HMM TIGR02624 YP_002241218.1 identified by similarity to GB:AAQ92407.1; match to protein family HMM TIGR02637 YP_002241219.1 identified by similarity to GB:AAQ92408.1; match to protein family HMM PF00005 YP_002241220.1 identified by similarity to GB:AAQ92409.1; match to protein family HMM PF02653 YP_002241221.1 identified by similarity to GB:AAQ92410.1; match to protein family HMM PF02653 YP_002241222.1 identified by match to protein family HMM PF00465; match to protein family HMM TIGR02638 YP_002241223.1 identified by match to protein family HMM PF05336; match to protein family HMM TIGR02625 YP_002241224.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments YP_002241225.1 identified by similarity to SP:P16551; match to protein family HMM PF02065 YP_002241226.1 identified by similarity to SP:P21867; match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002241227.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002241228.1 identified by match to protein family HMM PF03591 YP_002241229.1 identified by match to protein family HMM PF05437 YP_002241230.1 identified by similarity to GB:CAG75260.1 YP_002241231.1 identified by match to protein family HMM PF00359 YP_002241232.1 identified by similarity to GB:CAG75258.1 YP_002241233.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167 YP_002241234.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_002241235.1 identified by match to protein family HMM PF02302 YP_002241236.1 identified by match to protein family HMM PF00365 YP_002241237.1 identified by similarity to GB:CAD33779.1; match to protein family HMM PF07338 YP_002241238.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002241239.1 Selenoprotein. identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553 YP_002241240.1 identified by similarity to SP:P0AAJ5; match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582 YP_002241241.1 cytochrome b556(FDO) component; heme containing YP_002241242.1 required for the formation of active formate dehydrogenase YP_002241243.1 identified by match to protein family HMM PF01850 YP_002241244.1 Similar to Escherichia coli yiiF; identified by similarity to SP:P0AFU7; match to protein family HMM PF01402 YP_002241245.1 identified by match to protein family HMM PF07859 YP_002241246.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR02447 YP_002241247.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002241248.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_002241249.1 identified by similarity to SP:P0A8Y4; match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002241250.1 identified by similarity to SP:P0A3B4; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002241251.1 forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme YP_002241252.1 sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation YP_002241253.1 response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54 YP_002241254.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002241255.1 Similar to Escherichia coli yihI; identified by similarity to SP:P0A8H7; match to protein family HMM PF04220 YP_002241256.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002241257.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002241258.1 identified by match to protein family HMM PF01553 YP_002241259.1 identified by similarity to SP:P52235; match to protein family HMM PF01323 YP_002241260.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_002241261.1 Similar to Escherichia coli yihD; identified by similarity to SP:P0ADP9; match to protein family HMM PF06288 YP_002241262.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_002241263.1 in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway YP_002241264.1 Similar to Escherichia coli yieP; identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002241265.1 identified by similarity to SP:P31474; match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002241266.1 DNA-binding transcriptional repressor of ribose metabolism YP_002241267.1 catalyzes the formation of D-ribose 5-phosphate from ribose YP_002241268.1 substrate-binding component of the ATP-dependent ribose transport system YP_002241269.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B YP_002241270.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain YP_002241271.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_002241272.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH YP_002241273.1 interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase YP_002241274.1 contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA YP_002241275.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002241276.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_002241277.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002241278.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002241279.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002241280.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation YP_002241281.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002241282.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002241283.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002241284.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002241285.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002241286.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002241287.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002241288.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002241289.1 identified by Glimmer3 YP_002241290.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002241291.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002241292.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_002241293.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002241294.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_002241295.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002241296.1 regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon YP_002241297.1 identified by similarity to SP:P26218; match to protein family HMM PF02264 YP_002241298.1 identified by match to protein family HMM PF00756; match to protein family HMM PF02922 YP_002241299.1 identified by match to protein family HMM PF01182 YP_002241300.1 YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily YP_002241301.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002241302.1 Similar to Escherichia coli yieF; identified by match to protein family HMM PF03358 YP_002241303.1 Similar to Escherichia coli yieE; identified by similarity to SP:P0ADM8 YP_002241304.1 Involved in anaerobic NO protection YP_002241305.1 Confers resistance to chloramphenicol YP_002241306.1 identified by match to protein family HMM PF00583 YP_002241307.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002241308.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_002241309.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002241310.1 in Escherichia coli transcription of this gene is enhanced by polyamines