; oligo-analysis  -quick -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i /software/CC/bio/opt/rsat/rsa-tools//data/genomes/Kluyveromyces_waltii/genome/Kluyveromyces_waltii_start_codons.wc -o /software/CC/bio/opt/rsat/rsa-tools//data/genomes/Kluyveromyces_waltii/genome/Kluyveromyces_waltii_start_codon_frequencies
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.163
; Quick counting mode          
; Oligomer length              	3
; Input file                   	$RSAT/data/genomes/Kluyveromyces_waltii/genome/Kluyveromyces_waltii_start_codons.wc
; Input format                 	wc
; Output file                  	$RSAT/data/genomes/Kluyveromyces_waltii/genome/Kluyveromyces_waltii_start_codon_frequencies
; Count overlapping matches
; Counted on a single strand
; Background model             	Bernoulli
; Background estimation method 	
; Sequence type                	DNA
; Nb of sequences              	0
; Sum of sequence lengths      	0
; discarded residues           	NA (quick mode)	 (other letters than ACGT)
; discarded occurrences        	NA (quick mode)	 (contain discarded residues)
; nb possible positions        	NA (quick mode)
; total oligo occurrences      	5349
; alphabet size                	4
; nb possible oligomers        	64
; oligomers tested for significance	0
; Threshold values
;	Parameter      	Lower	Upper
;	ms_P           	none	1
;	occ_P          	none	1
; Sequences:
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	occ            	observed occurrences
#seq	id	obs_freq	occ
atg	atg	0.9753224901851	5217
gat	gat	0.0014956066554	8
acg	acg	0.0014956066554	8
agc	agc	0.0011217049916	6
act	act	0.0009347541597	5
ata	ata	0.0009347541597	5
ttc	ttc	0.0007478033277	4
aac	aac	0.0007478033277	4
gct	gct	0.0007478033277	4
aat	aat	0.0007478033277	4
aag	aag	0.0007478033277	4
gtg	gtg	0.0007478033277	4
cac	cac	0.0007478033277	4
agg	agg	0.0005608524958	3
att	att	0.0005608524958	3
ctt	ctt	0.0005608524958	3
tta	tta	0.0005608524958	3
cta	cta	0.0005608524958	3
gac	gac	0.0005608524958	3
aca	aca	0.0005608524958	3
ggc	ggc	0.0005608524958	3
tcg	tcg	0.0005608524958	3
acc	acc	0.0005608524958	3
cct	cct	0.0005608524958	3
ttg	ttg	0.0005608524958	3
atc	atc	0.0005608524958	3
cca	cca	0.0003739016639	2
gta	gta	0.0003739016639	2
tgc	tgc	0.0003739016639	2
ccc	ccc	0.0003739016639	2
ccg	ccg	0.0003739016639	2
cat	cat	0.0003739016639	2
tga	tga	0.0003739016639	2
agt	agt	0.0003739016639	2
ttt	ttt	0.0001869508319	1
gcg	gcg	0.0001869508319	1
caa	caa	0.0001869508319	1
cgt	cgt	0.0001869508319	1
tac	tac	0.0001869508319	1
cga	cga	0.0001869508319	1
taa	taa	0.0001869508319	1
ggg	ggg	0.0001869508319	1
gca	gca	0.0001869508319	1
ggt	ggt	0.0001869508319	1
aaa	aaa	0.0001869508319	1
gtc	gtc	0.0001869508319	1
ctc	ctc	0.0001869508319	1
cgg	cgg	0.0001869508319	1
gga	gga	0.0001869508319	1
gtt	gtt	0.0001869508319	1
tat	tat	0.0001869508319	1
; Host name	nic48
; Job started	2011_11_26.225218
; Job done	2011_11_26.225219
; Seconds	0.15