-- dump date 20120504_143350 -- class Genbank::CDS -- table cds_note -- id note YP_004385897.1 PFAM: Transposase, mutator type; KEGG: lfe:LAF_0677 transposase YP_004385898.1 PFAM: Transposase, Tn3; KEGG: lpl:pWCFS103_43 putative transposase YP_004385899.1 KEGG: lpl:pWCFS103_42 putative resolvase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal YP_004385900.1 KEGG: lpl:pWCFS103_10 regulator of arsenical resistance; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004385901.1 KEGG: lpl:pWCFS103_12 arsenical pump-driving ATPase; TIGRFAM: ATPase, anion-transporting YP_004385902.1 KEGG: lpl:pWCFS103_13 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein YP_004385903.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: lpl:pWCFS103_15 repressor of arsenical resistance YP_004385904.1 SMART: Protein-tyrosine phosphatase, low molecular weight; TIGRFAM: Arsenate reductase StaphA (thioredoxin); KEGG: lcb:LCABL_29620 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight YP_004385905.1 KEGG: lpl:pWCFS103_21 hypothetical protein YP_004385906.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: lcz:LCAZH_p024 protein TrsI, topoisomerase 1A-like protein; PFAM: DNA topoisomerase, type IA, central; Toprim domain YP_004385907.1 PFAM: MobA/MobL protein; KEGG: lsl:LSL_2005 nickase YP_004385908.1 KEGG: lsl:pSF118-20_02 hypothetical protein YP_004385909.1 KEGG: lsl:LSL_2003 hypothetical protein YP_004385911.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: efa:EF_C0018 replication-associated protein RepB YP_004385912.1 KEGG: bcz:pE33L54_0002 hypothetical protein YP_004385913.1 PFAM: Integrase, catalytic core; KEGG: lcr:LCRIS_00542 transposase YP_004385914.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004385915.1 PFAM: Transposase IS3/IS911family; KEGG: ppe:PEPE_0523 transposase YP_004385916.1 KEGG: lbr:LVIS_2140 arsenate reductase; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004385917.1 PFAM: Integrase, catalytic core; KEGG: lcb:LCABL_26180 transposase TraISLpl1 YP_004385918.1 KEGG: lbr:LVIS_0081 hypothetical protein YP_004385919.1 TIGRFAM: Ribokinase, bacterial; KEGG: lpl:lp_0500 ribokinase; PFAM: Carbohydrate/purine kinase YP_004385920.1 KEGG: lpl:lp_0499 hypothetical protein YP_004385921.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase, type 1; KEGG: lpl:lp_0497 deoxyribose-phosphate aldolase YP_004385922.1 PFAM: Sugar-binding domain, putative; KEGG: lfe:LAF_1739 deoxyribonucleoside regulator YP_004385923.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ooe:OEOE_1614 fucose permease YP_004385924.1 KEGG: ooe:OEOE_1613 D-ribose pyranase; HAMAP: D-ribose pyranase; PFAM: D-ribose pyranase RbsD/L-fucose mutarotase FucU YP_004385925.1 TIGRFAM: Ribokinase, bacterial; KEGG: ooe:OEOE_1612 ribokinase family sugar kinase; PFAM: Carbohydrate/purine kinase YP_004385926.1 PFAM: Ribose 5-phosphate isomerase, type A; TIGRFAM: Ribose 5-phosphate isomerase, type A; HAMAP: Ribose-5-phosphate isomerase, type A, subgroup; KEGG: ppe:PEPE_1506 ribose-5-phosphate isomerase A YP_004385927.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004385928.1 KEGG: lpj:JDM1_1036 transporter YP_004385929.1 PFAM: Glycosyl transferase, family 14; KEGG: bln:Blon_2104 glycosyl transferase, family 14 YP_004385930.1 KEGG: lsa:LSA1574 glycerol-3-phosphate cytidyltransferase (CDP-glycerol pyrophosphorylase) (teichoic acid biosynthesis protein D); TIGRFAM: Cytidyltransferase-related; PFAM: Cytidylyltransferase YP_004385931.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004385932.1 PFAM: Transposase, mutator type; KEGG: lfe:LAF_0677 transposase YP_004385933.1 PFAM: Glycosyl transferase, family 2; KEGG: bfr:BF1543 glycosyltransferase YP_004385935.1 PFAM: Glycosyl transferase, group 1; KEGG: ppn:Palpr_0409 glycosyl transferase group 1 YP_004385936.1 PFAM: Glycosyl transferase, family 2; KEGG: lfe:LAF_0089 putative glycosyltransferase YP_004385937.1 KEGG: lpl:lp_1201 priming glycosyltransferase; manually curated; PFAM: Bacterial sugar transferase YP_004385938.1 KEGG: lps:LPST_C0962 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004385939.1 KEGG: lrf:LAR_0988 exopolysaccharide biosynthesis protein; PFAM: PHP, C-terminal YP_004385940.1 KEGG: lfe:LAF_0086 exopolysaccharide biosynthesis protein; TIGRFAM: Exopolysaccharide synthesis protein YP_004385941.1 PFAM: Lipopolysaccharide biosynthesis; KEGG: ljf:FI9785_1182 polymerization and chain length determination protein YP_004385942.1 KEGG: lrf:LAR_1004 transcription regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator YP_004385943.1 PFAM: Replication initiator A, N-terminal; KEGG: lbr:LVIS_A09 hypothetical protein YP_004385945.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004385947.1 PFAM: Integrase, catalytic core, phage; KEGG: lme:LEUM_A08 integrase YP_004385948.1 KEGG: lbr:LVIS_B20 antitoxin of toxin-antitoxin stability system; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein YP_004385949.1 KEGG: lbr:LVIS_B21 hypothetical protein; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system YP_004385950.1 KEGG: lfe:LAF_1155 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; manually curated; TIGRFAM: Arsenate reductase StaphA (thioredoxin); SMART: Protein-tyrosine phosphatase, low molecular weight YP_004385951.1 PFAM: Integrase, catalytic core; KEGG: lcr:LCRIS_00542 transposase YP_004385952.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004385953.1 KEGG: lfe:LAF_1157 arsenical resistance operon repressor; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004385956.1 KEGG: lbr:LVIS_A10 hypothetical protein YP_004397355.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: lbr:LVIS_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal YP_004397356.1 SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: lbr:LVIS_0002 DNA polymerase sliding clamp subunit; PFAM: DNA polymerase III, beta chain, central; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, C-terminal YP_004397357.1 TIGRFAM: RNA-binding S4-related,YaaA; KEGG: lbr:LVIS_0003 S4-like RNA-binding protein YP_004397358.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA-binding, RecF; KEGG: lps:LPST_C0004 recombination protein F; PFAM: RecF/RecN/SMC YP_004397359.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA gyrase, subunit B; KEGG: lps:LPST_C0005 DNA gyrase, B subunit; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004397360.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: lbr:LVIS_0006 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004397361.1 KEGG: lcz:LCAZH_2316 L-lactate dehydrogenase (FMN-dependent)-like alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase YP_004397363.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, plastid/chloroplast; KEGG: lps:LPST_C0007 30S ribosomal protein S6; PFAM: Ribosomal protein S6 YP_004397364.1 KEGG: lbr:LVIS_0008 single-stranded DNA-binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding YP_004397365.1 TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: lsa:LSA0009 30S ribosomal protein S18; PFAM: Ribosomal protein S18 YP_004397366.1 KEGG: lps:LPST_C2744 Na(+)/H(+) antiporter; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_004397367.1 PFAM: Amino acid permease domain; KEGG: lfe:LAF_0745 amino acid transport protein YP_004397368.1 KEGG: lbr:LVIS_0017 signal protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SMART: Diguanylate cyclase, predicted YP_004397369.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: lps:LPST_C0011 50S ribosomal protein L9; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal YP_004397370.1 KEGG: lbr:LVIS_0020 replicative DNA helicase; TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal YP_004397371.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004397372.1 KEGG: lbr:LVIS_0204 hypothetical protein YP_004397373.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lla:L49937 transcription regulator YP_004397374.1 PFAM: Integrase, catalytic core, phage; KEGG: lpj:JDM1_0030 prophage Lp3 protein 1, integrase YP_004397375.1 KEGG: bcy:Bcer98_2963 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397376.1 KEGG: llk:LLKF_2453 phage protein YP_004397377.1 KEGG: lsa:LSA0591 prophage lsa1 protein YP_004397378.1 PFAM: Phage regulatory protein, Rha-like; KEGG: lpl:lp_3388 prophage Lp4 protein 3, phage-like repressor YP_004397382.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004397384.1 KEGG: lrl:LC705_01063 hypothetical protein YP_004397385.1 KEGG: lpl:lp_3383 prophage Lp4 protein 7, DNA replication; PFAM: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 1; SMART: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 1 YP_004397386.1 TIGRFAM: DNA primase, phage/plasmid; PFAM: DNA primase/nucleoside triphosphatase, C-terminal; Phage/plasmid primase, P4, C-terminal; KEGG: lpl:lp_3382 prophage Lp4 protein 8, DNA primase/helicase; SMART: Phage/plasmid primase, P4, C-terminal YP_004397388.1 KEGG: lsa:LSA0596 prophage lsa1 protein YP_004397389.1 KEGG: smb:smi_2008 hypothetical protein YP_004397390.1 PFAM: Integrase, catalytic core; KEGG: gka:GK2012 transposase YP_004397391.1 PFAM: Integrase, catalytic core; KEGG: lca:LSEI_2859 IS30 family transposase YP_004397392.1 KEGG: str:Sterm_1513 MazG nucleotide pyrophosphohydrolase YP_004397393.1 KEGG: lsa:LSA1255 hypothetical protein; PFAM: Protein of unknown function DUF2075; Excinuclease ABC, C subunit, N-terminal; SMART: ATPase, AAA+ type, core YP_004397395.1 PFAM: Integrase, catalytic core; KEGG: lps:LPST_P0025 ISLpl1 transposase YP_004397396.1 TIGRFAM: Conserved hypothetical protein CHP02328; KEGG: lbr:LVIS_1846 hypothetical protein YP_004397397.1 PFAM: Domain of unknown function DUF1722; KEGG: lbr:LVIS_1845 hypothetical protein YP_004397398.1 KEGG: lki:LKI_10796 hypothetical protein YP_004397399.1 KEGG: lbr:LVIS_0029 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004397400.1 TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS fold; KEGG: lbr:LVIS_0030 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; PAS YP_004397401.1 PFAM: Regulatory protein YycH; KEGG: lbr:LVIS_0031 hypothetical protein YP_004397402.1 PFAM: Regulatory protein YycI; KEGG: ppe:PEPE_1794 hypothetical protein YP_004397403.1 KEGG: ppe:PEPE_1793 beta-lactamase superfamily hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004397404.1 KEGG: lbr:LVIS_0034 trypsin-like serine protease; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004397405.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397406.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: lbr:LVIS_0035 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted YP_004397407.1 KEGG: lmy:LM5923_0903 hypothetical protein; PFAM: Amidohydrolase 2 YP_004397408.1 PFAM: Protein of unknown function DUF2316; KEGG: lcz:LCAZH_2086 hypothetical protein YP_004397409.1 KEGG: lca:LSEI_2127 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004397410.1 KEGG: ooe:OEOE_0025 lactate dehydrogenase related enzyme; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004397411.1 PFAM: Helix-turn-helix, HxlR type; KEGG: btk:BT9727_4055 transcriptional regulator YP_004397412.1 KEGG: lfe:LAF_0984 hypothetical protein YP_004397413.1 KEGG: lbr:LVIS_0378 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397414.1 KEGG: lac:LBA1109 putative exported YP_004397415.1 KEGG: bmj:BMULJ_00255 putative transcriptional regulator YP_004397416.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lbr:LVIS_0057 ABC-type oligopeptide transport system, periplasmic component YP_004397417.1 KEGG: lac:LBA0569 aminopeptidase I zinc metalloprotease; PFAM: Peptidase M42 YP_004397418.1 PFAM: Peptidase C26; KEGG: lrl:LC705_01263 glutamine amidotransferase YP_004397419.1 PFAM: Glycoside hydrolase, family 31; KEGG: lpj:JDM1_2821 alpha-glucosidase YP_004397423.1 KEGG: aac:Aaci_1250 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004397424.1 KEGG: min:Minf_1323 formate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004397425.1 TIGRFAM: Alpha-acetolactate decarboxylase; KEGG: lbr:LVIS_0492 alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase YP_004397426.1 TIGRFAM: Acetolactate synthase, catabolic; KEGG: lbr:LVIS_0491 acetolactate synthase; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain YP_004397427.1 KEGG: lbr:LVIS_0490 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004397428.1 KEGG: bwe:BcerKBAB4_0756 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004397430.1 TIGRFAM: Acetoin reductase; KEGG: cgb:cg2958 L-2,3-butanediol dehydrogenase/acetoin reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397431.1 PFAM: Phosphotransferase system, sugar-specific permease component; KEGG: lbr:LVIS_0328 galacitol PTS, EIIC YP_004397432.1 KEGG: efa:EF0422 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal YP_004397433.1 KEGG: lrl:LC705_02692 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397434.1 KEGG: ooe:OEOE_0130 2-dehydro-3-deoxygluconokinase; PFAM: Carbohydrate/purine kinase YP_004397435.1 TIGRFAM: KDPG/KHG aldolase; KEGG: efa:EF0423 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase YP_004397436.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004397437.1 KEGG: cac:CA_C0625 periplasmic aspartyl protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004397439.1 PFAM: Beta-lactamase-related; KEGG: lbr:LVIS_1798 beta-lactamase class C related penicillin binding protein YP_004397440.1 PFAM: Beta-lactamase-related; KEGG: lpl:lp_2021 serine-type D-Ala-D-Ala carboxypeptidase YP_004397441.1 KEGG: lps:LPST_C1614 D-Ala-teichoic acid biosynthesis protein (putative) YP_004397442.1 TIGRFAM: D-alanine-activating enzyme; Amino acid adenylation; KEGG: lpj:JDM1_1687 D-alanine--poly(phosphoribitol) ligase subunit 1; PFAM: AMP-dependent synthetase/ligase YP_004397443.1 PFAM: Membrane bound O-acyl transferase, MBOAT; KEGG: lpj:JDM1_1686 D-alanyl transfer protein DltB YP_004397444.1 TIGRFAM: D-alanyl carrier protein; HAMAP: D-alanine--poly(phosphoribitol) ligase subunit 2; KEGG: lga:LGAS_1816 D-alanine--poly(phosphoribitol) ligase subunit 2; PFAM: Phosphopantetheine-binding YP_004397445.1 PFAM: DltD, C-terminal; DltD, central region; DltD, N-terminal; KEGG: lps:LPST_C1610 D-alanyl transfer protein DltD YP_004397446.1 PFAM: Beta-lactamase-related; KEGG: lbr:LVIS_1798 beta-lactamase class C related penicillin binding protein YP_004397448.1 PFAM: ABC transporter-like; KEGG: lcz:LCAZH_0127 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004397449.1 KEGG: lsa:LSA0991 hypothetical protein YP_004397450.1 KEGG: lcz:LCAZH_2408 integral membrane protein for chromosome condensation; HAMAP: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein YP_004397451.1 TIGRFAM: Camphor resistance CrcB protein; HAMAP: Camphor resistance CrcB protein; KEGG: lcb:LCABL_26100 protein CrcB homolog; PFAM: Camphor resistance CrcB protein YP_004397452.1 KEGG: lbr:LVIS_0077 transcriptional regulator YP_004397453.1 PFAM: Amino acid permease domain; KEGG: lbr:LVIS_0078 glutamate gamma-aminobutyrate antiporter YP_004397454.1 TIGRFAM: Glutamate decarboxylase; KEGG: lbr:LVIS_0079 glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase YP_004397455.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: lbr:LVIS_0080 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004397456.1 KEGG: lbr:LVIS_0081 hypothetical protein YP_004397457.1 KEGG: lsl:LSL_1333 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0340; PFAM: Uncharacterised protein family UPF0340 YP_004397458.1 KEGG: lsl:LSL_1672 hypothetical protein YP_004397459.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: lbr:LVIS_2028 C4-dicarboxylate anaerobic carrier DcuC YP_004397460.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: lfe:LAF_0950 hypothetical protein YP_004397461.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lac:LBA1958 oligopeptide ABC transporter substrate binding protein YP_004397462.1 PFAM: Glycosyl hydrolase, family 13, catalytic domain; KEGG: lbr:LVIS_2180 trehalose-6-phosphate hydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004397463.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ooe:OEOE_0041 major facilitator superfamily permease YP_004397464.1 KEGG: ooe:OEOE_0042 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004397465.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lbr:LVIS_0911 Zn-dependent alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004397466.1 KEGG: lbr:LVIS_0721 hypothetical protein YP_004397467.1 KEGG: lbr:LVIS_0461 uracil-DNA glycosylase YP_004397468.1 SMART: Protein-tyrosine phosphatase, low molecular weight; TIGRFAM: Arsenate reductase StaphA (thioredoxin); KEGG: dhd:Dhaf_1210 arsenate reductase (thioredoxin); PFAM: Protein-tyrosine phosphatase, low molecular weight YP_004397469.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: ppe:PEPE_1424 inosine-uridine nucleoside N-ribohydrolase YP_004397470.1 KEGG: blb:BBMN68_102 FadB1; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004397472.1 KEGG: lrl:LC705_00652 hypothetical protein YP_004397473.1 TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: lrh:LGG_02149 sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein YP_004397474.1 KEGG: lps:LPST_C1072 glycerophosphodiester phosphodiesterase; manually curated; PFAM: Glycerophosphoryl diester phosphodiesterase YP_004397475.1 KEGG: lbr:LVIS_0233 protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004397476.1 KEGG: lpj:JDM1_1260 transcription regulator (putative); PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397477.1 KEGG: lpj:JDM1_1259 integral membrane protein YP_004397478.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ooe:OEOE_1456 ABC-type sugar transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004397479.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lps:LPST_C1070 ABC superfamily ATP binding cassette transporter, membrane protein YP_004397480.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ooe:OEOE_1458 ABC-type sugar transport system, permease component YP_004397481.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ooe:OEOE_1459 ABC-type sugar transport system, periplasmic component YP_004397482.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: ooe:OEOE_1460 glycerophosphoryl diester phosphodiesterase YP_004397483.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lbr:LVIS_1425 ABC-type oligopeptide transport system, periplasmic component YP_004397485.1 PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: lcz:LCAZH_1925 protoheme ferro-lyase YP_004397486.1 KEGG: lca:LSEI_1990 manganese transporter NRAMP; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein YP_004397487.1 PFAM: NADPH-dependent FMN reductase; KEGG: lps:LPST_C0776 integral membrane protein YP_004397488.1 KEGG: dhd:Dhaf_2005 zinc finger SWIM domain protein YP_004397489.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ooe:OEOE_1615 ABC-type dipeptide/oligopeptide/nickel transport system, periplasmic component YP_004397490.1 PFAM: Abortive infection protein; KEGG: lcb:LCABL_25670 PlnI (immunity protein PlnI, membrane-bound protease CAAX family) YP_004397491.1 KEGG: bde:BDP_0327 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004397492.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ooe:OEOE_0157 aryl-alcohol dehydrogenase related enzyme YP_004397494.1 PFAM: Protein of unknown function DUF81; KEGG: lrh:LGG_01934 permease YP_004397495.1 KEGG: llk:LLKF_2413 ECF-type sigma factor negative effector YP_004397496.1 KEGG: lgs:LEGAS_0399 RNA polymerase ECF sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2 YP_004397497.1 PFAM: Fructosamine/Ketosamine-3-kinase; KEGG: lcz:LCAZH_2860 fructosamine-3-kinase YP_004397498.1 KEGG: mcl:MCCL_0249 NADH:flavin oxidoreductase homolog; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004397499.1 TIGRFAM: Flavocytochrome c; KEGG: lpl:lp_1113 fumarate reductase, flavoprotein subunit precursor, N-terminally truncated; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal YP_004397500.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: lrl:LC705_02821 aldo/keto reductase YP_004397501.1 PFAM: Ferritin/Dps protein; KEGG: ooe:OEOE_1750 DNA-binding ferritin-like protein (oxidative damage protectant) YP_004397502.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lfe:LAF_0155 transporter protein YP_004397503.1 KEGG: btl:BALH_4908 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase YP_004397504.1 TIGRFAM: Alpha-acetolactate decarboxylase; KEGG: lbr:LVIS_0492 alpha-acetolactate decarboxylase; PFAM: Alpha-acetolactate decarboxylase YP_004397505.1 KEGG: bld:BLi02065 hypothetical protein; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004397506.1 PFAM: ThiJ/PfpI; KEGG: sga:GALLO_0686 hypothetical protein YP_004397507.1 KEGG: lps:LPST_C1436 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004397508.1 KEGG: sha:SH2303 hypothetical protein YP_004397509.1 PFAM: Glycosyl transferase, family 2; KEGG: llm:llmg_0646 intercellular adhesion protein A YP_004397511.1 PFAM: Polysaccharide deacetylase; KEGG: lla:L82521 intercellular adhesion protein YP_004397512.1 KEGG: lbr:LVIS_0431 hypothetical protein YP_004397513.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004397514.1 KEGG: lsl:LSL_0835 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII YP_004397515.1 KEGG: lps:LPST_C2769 lincomycin resistance protein LmrB; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004397517.1 PFAM: Streptococcal 67kDa myosin-cross-reactive antigen-like; KEGG: lsa:LSA0235 myosin-cross-reactive antigen YP_004397518.1 KEGG: ppm:PPSC2_c0274 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004397519.1 PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: lpj:JDM1_1013 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal YP_004397520.1 TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Extracellular solute-binding protein, family 3; Binding-protein-dependent transport systems inner membrane component; KEGG: lps:LPST_C0625 glutamine ABC superfamily ATP binding cassette transporter, substrate binding and permease protein; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004397521.1 TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: lpj:JDM1_1398 aminohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004397522.1 PFAM: LemA; KEGG: lga:LGAS_0076 hypothetical protein YP_004397523.1 PFAM: Peptidase M48; KEGG: lcr:LCRIS_00085 probable protease HtpX homolog YP_004397524.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbr:LVIS_0273 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004397525.1 KEGG: lfe:LAF_0139 hypothetical protein YP_004397526.1 KEGG: lpj:JDM1_2437 hypothetical protein YP_004397527.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: lsl:LSL_1365 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004397528.1 PFAM: Prephenate dehydratase; KEGG: clj:CLJU_c25500 prephenate dehydratase YP_004397529.1 KEGG: lbr:LVIS_0230 alpha/beta fold family hydrolase YP_004397530.1 KEGG: lbr:LVIS_2008 hypothetical protein YP_004397531.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lcb:LCABL_08140 carbonyl reductase YP_004397532.1 PFAM: Purine catabolism PurC-like; KEGG: lrl:LC705_02354 sugar diacid utilization regulator YP_004397533.1 KEGG: lbr:LVIS_1516 lactate dehydrogenase related enzyme; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004397538.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004397539.1 KEGG: lpj:JDM1_2642 transcription regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397540.1 KEGG: lcz:LCAZH_0519 branched-chain amino acid permease; TIGRFAM: Branched-chain amino acid transport system II carrier protein; PFAM: Branched-chain amino acid transport system II carrier protein YP_004397541.1 PFAM: Isochorismatase-like; KEGG: lrl:LC705_02816 isochorismatase hydrolase YP_004397542.1 KEGG: lbr:LVIS_1883 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004397543.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: ppe:PEPE_0086 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_004397544.1 KEGG: lps:LPST_C1996 prophage Lp1 protein 58, lysin; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup YP_004397546.1 KEGG: clj:CLJU_c13540 putative AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004397547.1 KEGG: clj:CLJU_c13530 putative sugar:sodium symporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004397548.1 PFAM: Protein of unknown function DUF1680; KEGG: clj:CLJU_c13520 hypothetical protein YP_004397549.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lme:LEUM_0874 major facilitator superfamily permease YP_004397550.1 KEGG: lcb:LCABL_07330 HTH-type transcriptional regulator GalR (galactose operon repressor); PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004397551.1 KEGG: lrl:LC705_00042 beta-glucuronidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YP_004397552.1 PFAM: Glycoside hydrolase, family 59; KEGG: lrl:LC705_00053 galactosidase YP_004397553.1 KEGG: lsl:LSL_1603 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG YP_004397554.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ccb:Clocel_3450 GCN5-related N-acetyltransferase YP_004397555.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bay:RBAM_006190 YycB YP_004397556.1 PFAM: Peptidase C26; KEGG: lme:LEUM_1797 glutamine amidotransferase YP_004397557.1 PFAM: Drug/metabolite transporter; KEGG: lps:LPST_C2436 DMT family permease YP_004397558.1 KEGG: lsl:LSL_0057 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004397559.1 KEGG: lsl:LSL_0057 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004397560.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: lps:LPST_C2365 oxidoreductase YP_004397561.1 KEGG: efe:EFER_2672 putative aldo-keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004397562.1 KEGG: lin:lin2740 hypothetical protein; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004397563.1 KEGG: lps:LPST_C2764 choloylglycine hydrolase; PFAM: Choloylglycine hydrolase YP_004397564.1 PFAM: Peptidase C26; KEGG: lsl:LSL_0056 glutamine amidotransferase, class I YP_004397565.1 KEGG: lsl:LSL_0057 glutamate--cysteine ligase; PFAM: Glutamate--cysteine ligase YP_004397566.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: lpl:lp_2894 ABC transporter, ATP-binding and permease protein; SMART: ATPase, AAA+ type, core YP_004397567.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; Ribosomal protein S9; KEGG: lpl:lp_2893 ABC transporter, ATP-binding and permease protein; SMART: ATPase, AAA+ type, core YP_004397568.1 PFAM: Heat shock protein Hsp20; KEGG: lrl:LC705_02795 HSP20 family small heat shock protein YP_004397569.1 PFAM: Heat shock protein Hsp20; KEGG: lcz:LCAZH_0619 molecular chaperone YP_004397570.1 PFAM: Domain of unknown function DUF125, transmembrane; KEGG: lps:LPST_C2762 integral membrane protein YP_004397571.1 PFAM: Domain of unknown function DUF125, transmembrane; KEGG: lbr:LVIS_1881 hypothetical protein YP_004397572.1 PFAM: Nitroreductase-like; KEGG: lbr:LVIS_0103 nitroreductase YP_004397573.1 KEGG: lfe:LAF_0820 ABC transporter permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004397574.1 KEGG: lca:LSEI_A10 ABC-type amino acid transport system, permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004397575.1 PFAM: ABC transporter-like; KEGG: lca:LSEI_A11 ABC-type polar amino acid transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004397576.1 KEGG: lca:LSEI_A12 amino acid ABC transporter periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004397577.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lpl:lp_2038 transport protein YP_004397578.1 PFAM: Dehydroquinase class I; TIGRFAM: Dehydroquinase class I; HAMAP: Dehydroquinase class I; KEGG: lpj:JDM1_2785 3-dehydroquinate dehydratase YP_004397579.1 PFAM: Polysaccharide deacetylase; KEGG: lbr:LVIS_2270 xylanase/chitin deacetylase YP_004397580.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lpj:JDM1_2948 lipoprotein precursor, peptide binding protein OppA-like protein YP_004397581.1 PFAM: Amidohydrolase 1; KEGG: lps:LPST_C3009 hypothetical protein YP_004397582.1 KEGG: lpj:JDM1_1702 transport protein; PFAM: Chorismate mutase, type II; SMART: Chorismate mutase YP_004397583.1 TIGRFAM: Chorismate synthase; KEGG: lps:LPST_C1627 chorismate synthase; PFAM: Chorismate synthase YP_004397584.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: lps:LPST_C1625 3-phosphoshikimate 1-carboxyvinyltransferase YP_004397585.1 KEGG: lpj:JDM1_1698 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase YP_004397586.1 HAMAP: Shikimate kinase; KEGG: lpj:JDM1_1697 shikimate kinase; PFAM: Shikimate kinase YP_004397587.1 TIGRFAM: Shikimate dehydrogenase; HAMAP: Shikimate, quinate/shikimate dehydrogenase; KEGG: lpl:lp_1084 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase YP_004397588.1 KEGG: lbr:LVIS_2201 hypothetical protein; TIGRFAM: ThiW; PFAM: ThiW YP_004397589.1 KEGG: lgs:LEGAS_1537 galactose operon repressor; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004397590.1 KEGG: lpj:JDM1_2778 sugar transport protein; TIGRFAM: Sodium:galactoside symporter; Phosphotransferase system, sugar-specific permease EIIA 1 domain; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain YP_004397591.1 KEGG: lbr:LVIS_1758 alpha-galactosidase; PFAM: Glycoside hydrolase, clan GH-D YP_004397592.1 KEGG: esc:Entcl_2166 galactoside O-acetyltransferase YP_004397593.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lps:LPST_C1492 transport protein YP_004397594.1 KEGG: lme:LEUM_1484 hypothetical protein YP_004397595.1 KEGG: lrl:LC705_01465 DegV family protein; TIGRFAM: DegV; PFAM: DegV YP_004397596.1 KEGG: lps:LPST_C2432 possible toxin regulator YP_004397598.1 KEGG: cal:CaO19.4072 low complexity orf similar to C. albicans HYR1 protein YP_004397599.1 KEGG: pfh:PFHG_03984 conserved hypothetical protein YP_004397604.1 KEGG: lcb:LCABL_00900 cell growth regulatory protein YP_004397605.1 KEGG: lrl:LC705_01150 hypothetical protein YP_004397606.1 KEGG: lps:LPST_C2349 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004397607.1 PFAM: PemK-like protein; KEGG: lfe:LAF_0113 hypothetical protein YP_004397608.1 TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: lfe:LAF_0112 hypothetical protein; SMART: Transcription regulator AbrB/SpoV, predicted YP_004397609.1 KEGG: lcz:LCAZH_1404 hypothetical protein YP_004397611.1 TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: lfe:LAF_0728 carbamoyl-phosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation YP_004397612.1 TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: mcl:MCCL_0772 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004397613.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: lps:LPST_C2223 aspartate carbamoyltransferase catalytic subunit YP_004397614.1 TIGRFAM: Dihydroorotase; KEGG: lsl:LSL_0191 dihydroorotase; PFAM: Amidohydrolase 1 YP_004397615.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004397616.1 PFAM: NUDIX hydrolase domain; KEGG: lpj:JDM1_2216 ADP-ribose pyrophosphatase YP_004397617.1 PFAM: Small multidrug resistance protein; KEGG: lhe:lhv_0050 small multidrug efflux protein YP_004397618.1 PFAM: Uncharacterised protein family UPF0150; KEGG: afn:Acfer_1287 protein of unknown function UPF0150 YP_004397619.1 PFAM: Uncharacterised protein family UPF0395 YP_004397620.1 KEGG: lhe:lhv_0049 phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Amino acid-binding ACT YP_004397621.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, subgroup; HAMAP: Phosphoserine aminotransferase; KEGG: lhe:lhv_0048 phosphoserine aminotransferase YP_004397622.1 KEGG: lhe:lhv_0047 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004397624.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lsl:LSL_1882 oligopeptide-binding protein OppA YP_004397626.1 KEGG: lrf:LAR_0185 L-2-hydroxyisocaproate dehydrogenase; PFAM: Lactate/malate dehydrogenase, C-terminal; Lactate/malate dehydrogenase, N-terminal YP_004397627.1 PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: lsa:LSA1833 integral membrane protein YP_004397628.1 PFAM: UbiA prenyltransferase; KEGG: lcr:LCRIS_01634 prenyltransferase, UbiA family YP_004397629.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: lbr:LVIS_1920 SAM-dependent methyltransferase; PFAM: UbiE/COQ5 methyltransferase YP_004397630.1 KEGG: lcz:LCAZH_2117 aspartate/tyrosine/aromatic aminotransferase; PFAM: Aminotransferase, class I/classII YP_004397631.1 KEGG: lrl:LC705_02167 D-2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004397632.1 KEGG: lcb:LCABL_23370 PTS system, fructose-specific IIBC component YP_004397634.1 PFAM: Integrase, catalytic core; KEGG: lps:LPST_P0025 ISLpl1 transposase YP_004397635.1 KEGG: ooe:OEOE_1191 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004397636.1 KEGG: vpr:Vpar_1624 putative 5-nitroimidazole antibiotic resistance YP_004397637.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004397639.1 KEGG: bld:BLi02541 hypothetical protein YP_004397640.1 KEGG: lgs:LEGAS_1253 ABC transporter ATP-binding protein MsbA family protein; PFAM: ABC transporter, transmembrane domain; ABC transporter-like YP_004397641.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004397642.1 PFAM: Abortive infection bacteriophage resistance-related; KEGG: lmh:LMHCC_2700 hypothetical protein YP_004397643.1 KEGG: lbr:LVIS_2003 glutathione peroxidase; PFAM: Glutathione peroxidase YP_004397644.1 PFAM: Protein of unknown function DUF915, hydrolase-like; KEGG: lps:LPST_C1557 cell surface hydrolase (putative) YP_004397645.1 KEGG: lbr:LVIS_0341 hypothetical protein YP_004397646.1 KEGG: lbr:LVIS_0341 hypothetical protein YP_004397647.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lga:LGAS_1759 transcriptional regulator YP_004397648.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: lbr:LVIS_2198 peptide ABC transporter permease YP_004397649.1 PFAM: ABC transporter-like; KEGG: ooe:OEOE_0735 peptide ABC transporter ATPase; SMART: ATPase, AAA+ type, core YP_004397650.1 KEGG: lbr:LVIS_0065 aromatic compounds catabolism protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily YP_004397651.1 TIGRFAM: Naphthoate synthase; KEGG: lbr:LVIS_0066 naphthoate synthase; PFAM: Crotonase, core YP_004397652.1 TIGRFAM: O-succinylbenzoate-CoA ligase; KEGG: lbr:LVIS_0067 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-dependent synthetase/ligase YP_004397653.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Putrescine carbamoyltransferase; KEGG: lsa:LSA0067 putrescine carbamoyltransferase YP_004397654.1 PFAM: Amino acid permease domain; KEGG: lmc:Lm4b_00046 amino acid transporter YP_004397655.1 PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; TIGRFAM: Agmatine deiminase; HAMAP: Agmatine deiminase; KEGG: lbr:LVIS_2208 agmatine deiminase YP_004397656.1 TIGRFAM: Bacterial carbamate kinase; KEGG: lsa:LSA0071 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004397657.1 PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; TIGRFAM: Agmatine deiminase; HAMAP: Agmatine deiminase; KEGG: lsa:LSA0072 putative peptidylarginine deiminase (amidinotransferase) YP_004397658.1 PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: lsa:LSA0073 RpiR family transcriptional regulator YP_004397660.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: lgs:LEGAS_0793 50S ribosomal protein L33 1; PFAM: Ribosomal protein L33 YP_004397661.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbr:LVIS_0392 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004397662.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ooe:OEOE_0510 aryl-alcohol dehydrogenase related enzyme YP_004397663.1 KEGG: lps:LPST_C0661 exopolyphosphatase YP_004397664.1 PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: lbr:LVIS_0703 polyphosphate kinase YP_004397665.1 PFAM: Ppx/GppA phosphatase; KEGG: lbr:LVIS_0702 exopolyphosphatase YP_004397666.1 PFAM: VanZ-like; RDD; KEGG: lca:LSEI_2586 glycopeptide antibiotics resistance protein YP_004397667.1 PFAM: Domain of unknown function DUF218; KEGG: lrl:LC705_02565 hypothetical protein YP_004397668.1 KEGG: lbr:LVIS_2140 arsenate reductase; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004397669.1 KEGG: lrf:LAR_1303 transaminase; PFAM: Aminotransferase, class I/classII YP_004397670.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: lhe:lhv_1915 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase YP_004397671.1 PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: lhe:lhv_1914 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase YP_004397672.1 HAMAP: S-ribosylhomocysteinase (LuxS); KEGG: lbu:LBUL_1233 S-ribosylhomocysteinase; PFAM: S-ribosylhomocysteinase (LuxS) YP_004397673.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lps:LPST_C2279 transcription regulator (putative) YP_004397674.1 PFAM: ABC-2 type transporter; KEGG: lps:LPST_C2280 ABC superfamily ATP binding cassette transporter, permease protein YP_004397675.1 PFAM: ABC transporter-like; KEGG: lps:LPST_C2281 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004397676.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: lbr:LVIS_0417 purine-cytosine permease related protein YP_004397677.1 PFAM: Pentapeptide repeat; KEGG: lgs:LEGAS_1848 putative quinolone resistance protein YP_004397678.1 KEGG: lhe:lhv_1954 ABC transporter YP_004397679.1 PFAM: ABC transporter-like; KEGG: lhe:lhv_1955 cobalt transport ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004397680.1 KEGG: lhe:lhv_1956 putative metal ion ABC transporter YP_004397681.1 KEGG: lbr:LVIS_1982 hypothetical protein YP_004397682.1 KEGG: lhe:lhv_1948 hypothetical protein YP_004397683.1 KEGG: lbr:LVIS_1910 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal YP_004397684.1 KEGG: lbr:LVIS_1909 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal YP_004397685.1 KEGG: lbr:LVIS_1922 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397686.1 KEGG: lwe:lwe1819 protein-tyrosine phosphatase, putative YP_004397687.1 KEGG: ooe:OEOE_0728 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004397688.1 KEGG: lrl:LC705_02409 NRAMP family Mn2/Fe2 transporter; TIGRFAM: Natural resistance-associated macrophage protein; PFAM: Natural resistance-associated macrophage protein YP_004397689.1 PFAM: UspA; KEGG: ooe:OEOE_1794 universal stress protein UspA-like nucleotide-binding protein YP_004397690.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_1917 major facilitator superfamily permease YP_004397691.1 KEGG: ooe:OEOE_1299 NAD-dependent aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain YP_004397692.1 TIGRFAM: Diacylglycerol/lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; KEGG: lbr:LVIS_1372 diacylglycerol kinase family lipid kinase; SMART: Diacylglycerol kinase, catalytic domain YP_004397693.1 PFAM: NUDIX hydrolase domain; KEGG: lbr:LVIS_0842 NUDIX family hydrolase YP_004397694.1 PFAM: Helix-turn-helix, HxlR type; KEGG: ppy:PPE_04140 HTH-type transcriptional activator HxlR YP_004397695.1 KEGG: lrl:LC705_00015 intracellular protease PfpI family; TIGRFAM: Peptidase C56, PfpI; PFAM: ThiJ/PfpI YP_004397696.1 KEGG: lps:LPST_C0294 ammonium transport protein; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter YP_004397697.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ppe:PEPE_1708 nucleoside-diphosphate-sugar epimerase YP_004397698.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lpj:JDM1_2737 cadmium transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004397699.1 PFAM: Heavy metal transport/detoxification protein; KEGG: lbr:LVIS_0693 copper chaperone YP_004397700.1 PFAM: Ferritin/Dps protein; KEGG: lpl:lp_3441 stress induced DNA binding protein (putative) YP_004397702.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: lpj:JDM1_2188 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core YP_004397703.1 TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: lpj:JDM1_2187 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004397704.1 PFAM: SAICAR synthetase; TIGRFAM: SAICAR synthetase; HAMAP: SAICAR synthetase; KEGG: lps:LPST_C2240 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004397705.1 KEGG: lps:LPST_C2239 purine biosynthesis cluster protein; TIGRFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit; PFAM: Phosphoribosylformylglycinamidine synthetase, PurS subunit YP_004397706.1 PFAM: CobB/CobQ-like glutamine amidotransferase; TIGRFAM: Phosphoribosylformylglycinamidine synthase I; HAMAP: Phosphoribosylformylglycinamidine synthase I; KEGG: lps:LPST_C2238 phosphoribosylformylglycinamidine synthase I YP_004397707.1 PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; TIGRFAM: Phosphoribosylformylglycinamidine synthase II; HAMAP: Phosphoribosylformylglycinamidine synthase II; KEGG: lpl:lp_2724 phosphoribosylformylglycinamidine synthase II YP_004397708.1 TIGRFAM: Amidophosphoribosyl transferase; KEGG: lps:LPST_C2237 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase YP_004397709.1 TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: lpl:lp_2722 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein YP_004397710.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: lps:LPST_C2235 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal YP_004397711.1 KEGG: lps:LPST_C2234 bifunctional phosphoribosylaminoimidazole carboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain YP_004397712.1 PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: lpl:lp_2719 phosphoribosylamine--glycine ligase YP_004397713.1 KEGG: lpj:JDM1_0095 hypothetical protein; HAMAP: Uncharacterised protein family UPF0246; PFAM: Uncharacterised protein family UPF0246 YP_004397714.1 TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: lcz:LCAZH_2569 hypothetical protein; PFAM: Alpha/beta hydrolase fold-1 YP_004397715.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: amu:Amuc_0740 haloacid dehalogenase domain protein hydrolase YP_004397716.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lhe:lhv_1508 permease YP_004397717.1 PFAM: PemK-like protein; KEGG: smb:smi_0438 transcriptional regulator YP_004397719.1 SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase; KEGG: ppe:PEPE_1675 orotidine-5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain YP_004397720.1 TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: lcr:LCRIS_01376 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004397721.1 TIGRFAM: Dihydroorotate dehydrogenase, class 1; KEGG: sce:YKL216W Dihydroorotate dehydrogenase, catalyzes the fourth enzymatic step in the de novo biosynthesis of pyrimidines, converting dihydroorotic acid into orotic acid; PFAM: Dihydroorotate dehydrogenase, class 1/ 2 YP_004397722.1 PFAM: ABC transporter-like; KEGG: ljo:LJ1150 excinuclease ATPase subunit YP_004397723.1 PFAM: ROK; KEGG: lbr:LVIS_2109 transcriptional regulator/sugar kinase, xylose operon regulator YP_004397724.1 KEGG: ttm:Tthe_0362 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004397725.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bde:BDP_0209 sugar transporter YP_004397726.1 KEGG: cbb:CLD_3368 O-glycosyl hydrolase, family protein; PFAM: Glycoside hydrolase, family 30 YP_004397727.1 PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Xylose isomerase, bacterial type; HAMAP: Xylose isomerase; KEGG: lbr:LVIS_0183 xylose isomerase YP_004397728.1 KEGG: lbr:LVIS_0184 xylulose kinase; TIGRFAM: Xylulokinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004397729.1 manually curated; KEGG: cno:NT01CX_2068 hypothetical protein YP_004397730.1 PFAM: Amino acid permease domain; KEGG: lfe:LAF_0745 amino acid transport protein YP_004397731.1 KEGG: lps:LPST_C2077 transcription regulator, AsnC-type; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type YP_004397732.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lrf:LAR_1026 multidrug transport protein YP_004397734.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397735.1 KEGG: lps:LPST_C0112 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain YP_004397736.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: lcz:LCAZH_2394 oxidoreductase YP_004397737.1 KEGG: ddi:DDB_G0281343 SH2 domain-containing protein YP_004397738.1 TIGRFAM: Sodium:galactoside symporter; KEGG: lcb:LCABL_06380 XylP protein YP_004397739.1 KEGG: lps:LPST_C2655 ABC superfamily ATP binding cassette transporter, permease protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245 YP_004397740.1 PFAM: ABC transporter-like; KEGG: lsl:LSL_1684 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004397742.1 PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: lrl:LC705_00032 integral membrane protein YP_004397743.1 KEGG: lbr:LVIS_2251 hypothetical protein YP_004397744.1 KEGG: lbr:LVIS_0122 hypothetical protein YP_004397745.1 KEGG: lbr:LVIS_1782 x-prolyl-dipeptidyl aminopeptidase; SMART: Peptidase S15/CocE/NonD, C-terminal; X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal YP_004397746.1 PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: ppe:PEPE_0544 integral membrane protein YP_004397747.1 PFAM: Xylose isomerase, TIM barrel domain; KEGG: lfe:LAF_1753 hypothetical protein YP_004397748.1 PFAM: YkuD domain; KEGG: lbr:LVIS_1784 hypothetical protein YP_004397749.1 PFAM: Uracil-DNA glycosylase-like; KEGG: lrf:LAR_1435 putative uracil-DNA glycosylase YP_004397750.1 PFAM: Methyladenine glycosylase; KEGG: lbr:LVIS_1958 3-methyladenine DNA glycosylase YP_004397751.1 PFAM: Glycine cleavage H-protein; KEGG: lrf:LAR_0463 putative glycine cleavage system YP_004397752.1 KEGG: dda:Dd703_0215 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase C-terminal metazoa/fungi; Lyase 1, N-terminal YP_004397753.1 TIGRFAM: Lipoyltransferase/lipoate-protein ligase; KEGG: lfe:LAF_1710 lipoate-protein ligase; PFAM: Biotin/lipoate A/B protein ligase; Lipoate protein ligase, C-terminal YP_004397754.1 PFAM: Glycine cleavage H-protein; KEGG: bcl:ABC2986 glycine cleavage system protein H YP_004397755.1 KEGG: lbr:LVIS_1188 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004397756.1 PFAM: Domain of unknown function DUF304l; KEGG: lbr:LVIS_0414 hypothetical protein YP_004397757.1 PFAM: Domain of unknown function DUF304l; KEGG: ooe:OEOE_1567 hypothetical protein YP_004397758.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_0399 major facilitator superfamily permease YP_004397759.1 TIGRFAM: Acetoin reductase; KEGG: lbr:LVIS_0187 acetoin reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397760.1 PFAM: Protein of unknown function DUF95, transmembrane; KEGG: mpd:MCP_0191 hypothetical protein YP_004397761.1 KEGG: lfe:LAF_0936 oxidoreductase; PFAM: NADP-dependent oxidoreductase domain YP_004397762.1 KEGG: lcb:LCABL_20970 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004397763.1 KEGG: lbr:LVIS_0131 putative exporter of polyketide antibiotics YP_004397764.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lpj:JDM1_0152 transcription regulator (putative) YP_004397765.1 KEGG: lrh:LGG_00610 hypothetical protein YP_004397766.1 KEGG: lbr:LVIS_0130 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004397767.1 KEGG: lrf:LAR_0267 hypothetical protein YP_004397768.1 KEGG: ooe:OEOE_0355 Crp-like transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp YP_004397769.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; KEGG: lfe:LAF_1558 sugar kinase YP_004397770.1 KEGG: lme:LEUM_1992 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II aldolase/adducin, N-terminal YP_004397771.1 PFAM: Glycosyl transferase, family 2; KEGG: lcz:LCAZH_0595 glycosyltransferase YP_004397772.1 KEGG: lbr:LVIS_0271 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_004397773.1 PFAM: Metallo-dependent phosphatase; KEGG: lps:LPST_C2679 3,5-cyclic-nucleotide phosphodiesterase YP_004397774.1 PFAM: Protein of unknown function DUF1275; KEGG: lsa:LSA0244 integral membrane protein YP_004397775.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lps:LPST_C1961 ribosomal protein acetylating enzyme YP_004397776.1 KEGG: sga:GALLO_0581 permease YP_004397777.1 PFAM: DNA alkylation repair enzyme; KEGG: lca:LSEI_2674 DNA alkylation repair protein YP_004397779.1 KEGG: ppe:PEPE_0016 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004397780.1 KEGG: lps:LPST_C0670 acyltransferase (putative) YP_004397781.1 PFAM: Protein of unknown function DUF1234; KEGG: lki:LKI_00605 hypothetical protein YP_004397782.1 KEGG: efa:EF2767 transcriptional regulator; PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C YP_004397783.1 KEGG: lbr:LVIS_0330 3-oxoacyl-acyl carrier protein reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397784.1 manually curated; KEGG: lfe:LAF_1723 hypothetical protein YP_004397785.1 KEGG: lga:LGAS_1644 DNA-entry nuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease YP_004397786.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: lbr:LVIS_0386 oxidoreductase YP_004397787.1 PFAM: SNARE associated Golgi protein; KEGG: ppe:PEPE_1737 hypothetical protein YP_004397788.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004397789.1 TIGRFAM: Transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: lbr:LVIS_0161 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal YP_004397790.1 KEGG: lbr:LVIS_0124 aggregation promoting factor-like surface protein YP_004397792.1 KEGG: ppe:PEPE_1454 xanthine/uracil permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004397793.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: lpl:lp_0951 transcription regulator YP_004397794.1 KEGG: lpj:JDM1_2818 maltose phosphorylase; PFAM: Glycoside hydrolase, family 65, central catalytic; Glycoside hydrolase, family 65, N-terminal YP_004397795.1 KEGG: lps:LPST_C1131 arginine repressor; HAMAP: Arginine repressor; PFAM: Arginine repressor, DNA-binding domain; Arginine repressor, C-terminal YP_004397796.1 PFAM: Uncharacterised protein family YfhO; KEGG: lps:LPST_C1899 integral membrane protein YP_004397797.1 PFAM: Amidinotransferase; TIGRFAM: Arginine deiminase; HAMAP: Arginine deiminase; KEGG: lbr:LVIS_2027 arginine deiminase YP_004397798.1 PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: lbr:LVIS_2026 ornithine carbamoyltransferase YP_004397799.1 TIGRFAM: Bacterial carbamate kinase; KEGG: lbr:LVIS_2023 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004397800.1 KEGG: lbr:LVIS_2022 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain YP_004397801.1 KEGG: btk:BT9727_0343 arginine-ornithine antiporter; TIGRFAM: Arginine/ornithine antiporter; Amino acid antiporter; PFAM: Amino acid permease domain YP_004397802.1 PFAM: Protein of unknown function DUF81; KEGG: lac:LBA0338 putative integral membrane protein YP_004397803.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: lrl:LC705_00734 haloacid dehalogenase-like family hydrolase YP_004397804.1 KEGG: cbe:Cbei_2944 hypothetical protein YP_004397805.1 KEGG: lsa:LSA1843 methylated-DNA-protein-cysteine S-methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding YP_004397806.1 KEGG: lrf:LAR_1557 hypothetical protein YP_004397807.1 KEGG: lbr:LVIS_2116 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397808.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: ljf:FI9785_1401 hypothetical protein YP_004397809.1 SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; KEGG: lbr:LVIS_2112 HD superfamily hydrolase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup YP_004397810.1 KEGG: lbr:LVIS_2142 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase; PFAM: 5'-Nucleotidase, C-terminal; Metallo-dependent phosphatase YP_004397811.1 KEGG: lbr:LVIS_2140 arsenate reductase; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004397812.1 KEGG: lbr:LVIS_1819 HAD superfamily hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004397814.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004397815.1 PFAM: Peptidase M10, metallopeptidase YP_004397816.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase domain; KEGG: lps:LPST_C2132 inosine-uridine preferring nucleoside hydrolase YP_004397817.1 KEGG: lbr:LVIS_1815 hypothetical protein YP_004397818.1 HAMAP: Ferredoxin--NADP reductase, type 2; KEGG: ppe:PEPE_0366 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004397819.1 PFAM: ABC transporter-like; KEGG: lcb:LCABL_15220 excinuclease ABC, subunit A YP_004397820.1 PFAM: Ion transport 2; KEGG: lps:LPST_C1372 potassium transport protein YP_004397821.1 PFAM: Sulfatase; KEGG: lrf:LAR_1723 alkaline phosphatase superfamily protein YP_004397822.1 KEGG: lbr:LVIS_1811 phosphoglycerate mutase family protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004397823.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lbr:LVIS_1810 acetyltransferase YP_004397824.1 PFAM: Phosphotransferase system, EIIC; KEGG: lps:LPST_C0927 cellobiose PTS, EIIC YP_004397825.1 PFAM: Protein of unknown function DUF915, hydrolase-like; KEGG: ppe:PEPE_0092 alpha/beta hydrolase superfamily protein YP_004397826.1 KEGG: lpj:JDM1_1611 integral membrane protein YP_004397827.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004397828.1 PFAM: NLP/P60; KEGG: lbr:LVIS_1809 cell wall-associated hydrolase YP_004397829.1 KEGG: lbr:LVIS_1804 RND superfamily drug exporter YP_004397830.1 KEGG: lbr:LVIS_1801 penicillin V acylase related amidase; PFAM: Choloylglycine hydrolase YP_004397831.1 KEGG: lbr:LVIS_1799 N-acetylmuramidase; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme domain, subfamily 2 YP_004397832.1 KEGG: lbr:LVIS_1797 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP03716, integral membrane, YkoY; PFAM: Integral membrane protein TerC YP_004397833.1 KEGG: ppe:PEPE_0373 thiol-disulfide isomerase and thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004397834.1 KEGG: lbr:LVIS_0197 hypothetical protein YP_004397835.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lbr:LVIS_0198 acetyltransferase YP_004397836.1 KEGG: lbr:LVIS_0199 Na+/H+ antiporter; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like YP_004397837.1 KEGG: lps:LPST_C2481 extracellular protein; PFAM: Peptidoglycan-binding lysin domain; Transglycosylase-like; SMART: Peptidoglycan-binding Lysin subgroup YP_004397838.1 KEGG: lbr:LVIS_1944 hypothetical protein YP_004397839.1 PFAM: IMP dehydrogenase/GMP reductase; TIGRFAM: Guanosine monophosphate reductase 2; HAMAP: Guanosine monophosphate reductase 2; KEGG: lga:LGAS_0389 guanosine 5'-monophosphate oxidoreductase YP_004397840.1 KEGG: lsl:LSL_1724 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; SMART: Adenylosuccinate synthetase YP_004397841.1 KEGG: lps:LPST_C2692 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal metazoa/fungi YP_004397842.1 TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: lcz:LCAZH_0433 hypothetical protein YP_004397843.1 KEGG: lbr:LVIS_0232 esterase/lipase YP_004397844.1 KEGG: lbr:LVIS_0234 hypothetical protein YP_004397845.1 KEGG: mgm:Mmc1_1487 hypothetical protein YP_004397847.1 KEGG: lbr:LVIS_0236 hypothetical protein YP_004397848.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: lbr:LVIS_0238 glycerol kinase YP_004397849.1 KEGG: lbr:LVIS_2104 hypothetical protein YP_004397850.1 KEGG: lbr:LVIS_2103 tRNA (uracil-5-)-methyltransferase related enzyme; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: Deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase YP_004397851.1 KEGG: lps:LPST_C2782 2,5-diketo-D-gluconate reductase; PFAM: NADP-dependent oxidoreductase domain YP_004397852.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lrl:LC705_02746 GNAT family acetyltransferase protein YP_004397853.1 KEGG: lbr:LVIS_2100 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397854.1 HAMAP: Hydroxyethylthiazole kinase; KEGG: lbr:LVIS_2099 hydroxyethylthiazole kinase; PFAM: Hydroxyethylthiazole kinase YP_004397855.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: lbr:LVIS_2098 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004397856.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; KEGG: lps:LPST_C0094 thiamine-phosphate diphosphorylase; PFAM: Thiamine monophosphate synthase YP_004397858.1 KEGG: lbr:LVIS_0341 hypothetical protein YP_004397860.1 KEGG: lbr:LVIS_1528 Zn-dependent protease; PFAM: Peptidase M10, metallopeptidase; SMART: Peptidase, metallopeptidase YP_004397861.1 PFAM: Uncharacterised protein family UPF0344; KEGG: lcb:LCABL_01420 hypothetical protein YP_004397862.1 KEGG: dsy:DSY1953 hypothetical protein YP_004397864.1 KEGG: pjd:Pjdr2_5115 hypothetical protein YP_004397866.1 KEGG: lsl:LSL_1843 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004397868.1 PFAM: ABC transporter-like; Domain of unknown function DUF214, ABC transporter permease; KEGG: ppe:PEPE_1650 peptide ABC transporter ATPase; SMART: ATPase, AAA+ type, core YP_004397869.1 SMART: Transcription regulator AbrB/SpoV, predicted; KEGG: lga:LGAS_0929 hypothetical protein YP_004397870.1 KEGG: lga:LGAS_0928 hypothetical protein YP_004397871.1 KEGG: lrl:LC705_01253 DegV family protein; TIGRFAM: DegV; PFAM: DegV YP_004397872.1 PFAM: Protein of unknown function DUF1836; KEGG: ooe:OEOE_0941 BS_ykrK family protein YP_004397873.1 KEGG: lbr:LVIS_2251 hypothetical protein; TIGRFAM: Bacterial surface protein 26-residue repeat; PFAM: Protein of unknown function DUF285, lipoprotein predicted YP_004397874.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397875.1 PFAM: TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C; KEGG: lme:LEUM_1546 putative transcription activator YP_004397877.1 TIGRFAM: Addiction module toxin, RelE/StbE; KEGG: lcr:LCRIS_01463 putative protein without homology YP_004397878.1 PFAM: NLP/P60; KEGG: ooe:OEOE_0805 cell wall-associated hydrolase YP_004397879.1 KEGG: lsl:LSL_0388 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004397880.1 KEGG: cac:CA_C0625 periplasmic aspartyl protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004397885.1 manually curated; KEGG: lfe:LAF_1723 hypothetical protein YP_004397886.1 PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: pag:PLES_34841 hypothetical protein YP_004397887.1 KEGG: ppe:PEPE_0114 RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like; TIGRFAM: RNA polymerase sigma-70; PFAM: Bacterio-opsin activator, HTH YP_004397888.1 KEGG: ppe:PEPE_1751 hypothetical protein YP_004397889.1 KEGG: lrf:LAR_1299 hypothetical protein YP_004397892.1 KEGG: lbr:LVIS_2086 hypothetical protein YP_004397893.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397894.1 KEGG: lcr:LCRIS_00167 hypothetical protein YP_004397896.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397897.1 PFAM: Carbonic anhydrase, alpha-class, catalytic domain; KEGG: lcz:LCAZH_0573 carbonic anhydrase YP_004397898.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397900.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397901.1 KEGG: aml:100464398 hypothetical protein LOC100464398 YP_004397905.1 KEGG: lde:LDBND_1830 hypothetical protein YP_004397906.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397907.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397908.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397909.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004397910.1 TIGRFAM: Prevent-host-death protein YP_004397911.1 PFAM: Lipase, GDSL; KEGG: lrf:LAR_0803 hypothetical protein YP_004397912.1 KEGG: saj:SaurJH9_0812 cell wall anchor domain-containing protein YP_004397913.1 KEGG: lbr:LVIS_2072 phosphopentomutase YP_004397914.1 PFAM: Na dependent nucleoside transporter, C-terminal; Na dependent nucleoside transporter; KEGG: lbr:LVIS_2071 nucleoside permease YP_004397915.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: lbr:LVIS_2070 xanthine/uracil/vitamin C permease YP_004397916.1 KEGG: lbr:LVIS_2069 ribonucleoside hydrolase RihC; PFAM: Inosine/uridine-preferring nucleoside hydrolase domain YP_004397917.1 TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; KEGG: ljf:FI9785_1587 peptidase T; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004397918.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: lbr:LVIS_2066 16S rRNA methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G YP_004397919.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: lbr:LVIS_2064 chromosome partitioning ATPase YP_004397920.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: lbr:LVIS_2063 Spo0J-like protein; SMART: ParB-like nuclease YP_004397921.1 PFAM: Protein of unknown function DUF951; KEGG: lbr:LVIS_2062 hypothetical protein YP_004397922.1 KEGG: lbr:LVIS_2061 GTP-dependent nucleic acid-binding protein EngD; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related YP_004397923.1 KEGG: lbr:LVIS_2060 hypothetical protein YP_004397924.1 KEGG: lfe:LAF_0081 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase YP_004397925.1 PFAM: NUDIX hydrolase domain; KEGG: lde:LDBND_0281 hydrolase (NUDIX family) YP_004397926.1 TIGRFAM: Nicotinate phosphoribosyltransferase putative; KEGG: lrl:LC705_02753 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004397927.1 PFAM: Streptococcal 67kDa myosin-cross-reactive antigen-like; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; KEGG: llk:LLKF_p0027 hypothetical protein YP_004397929.1 KEGG: lbr:LVIS_2057 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004397930.1 KEGG: lbr:LVIS_2056 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004397931.1 KEGG: ldb:Ldb1555 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_004397932.1 PFAM: Branched-chain amino acid transport, permease; KEGG: lbr:LVIS_2049 branched-chain amino acid permease (azaleucine resistance) YP_004397933.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: lbr:LVIS_2048 hypothetical protein YP_004397934.1 PFAM: Protein of unknown function DUF1694; KEGG: lrl:LC705_01224 hypothetical protein YP_004397935.1 KEGG: lbr:LVIS_2046 lipoprotein YP_004397936.1 PFAM: Uncharacterised protein family UPF0118; KEGG: lbr:LVIS_2044 permease YP_004397937.1 KEGG: ppe:PEPE_1710 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; SMART: Histidine phosphatase superfamily, clade-1 YP_004397938.1 PFAM: Amino acid permease domain; KEGG: lbr:LVIS_0901 amino acid transporter YP_004397939.1 KEGG: lrf:LAR_0414 galactoside O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004397940.1 KEGG: sep:SE0381 putative endonuclease III; PFAM: HhH-GPD domain; SMART: HhH-GPD domain YP_004397941.1 PFAM: Sugar transport; KEGG: lps:LPST_C2364 glucose uptake protein YP_004397942.1 KEGG: lbr:LVIS_1942 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004397943.1 PFAM: Protein of unknown function DUF1440; KEGG: lfe:LAF_0905 hypothetical protein YP_004397944.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lcz:LCAZH_0038 transcriptional regulator YP_004397945.1 TIGRFAM: Natural resistance-associated macrophage protein; HAMAP: Manganese transport protein MntH; KEGG: lca:LSEI_0030 manganese transport protein MntH; PFAM: Natural resistance-associated macrophage protein YP_004397946.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: lcb:LCABL_21420 magnesium transporter (magnesium transporter CorA) YP_004397947.1 KEGG: lwe:lwe1819 protein-tyrosine phosphatase, putative YP_004397948.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lrl:LC705_00050 MFS superfamily melibiose:Na transport protein YP_004397950.1 PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; KEGG: lrf:LAR_0276 beta-galactosidase large subunit YP_004397951.1 KEGG: ppe:PEPE_0204 beta-galactosidase; PFAM: Glycoside hydrolase, family 42, domain 5 YP_004397952.1 PFAM: Uncharacterised conserved protein UCP014753; KEGG: gym:GYMC10_0965 hypothetical protein YP_004397953.1 KEGG: pfr:PFREUD_18110 carboxylic ester hydrolase YP_004397954.1 PFAM: Abortive infection protein; KEGG: sga:GALLO_0817 hypothetical protein YP_004397955.1 PFAM: Peptidase M10, metallopeptidase YP_004397956.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lcz:LCAZH_1864 GNAT family acetyltransferase YP_004397957.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lcz:LCAZH_0198 major facilitator superfamily permease YP_004397959.1 PFAM: NUDIX hydrolase domain; KEGG: lpl:lp_0119 NTP pyrophosphohydrolase YP_004397960.1 KEGG: ooe:OEOE_1672 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004397961.1 KEGG: lps:LPST_C1157 hypothetical protein YP_004397962.1 PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: lsl:pSF118-20_04 hypothetical protein YP_004397963.1 KEGG: lcr:LCRIS_00748 aminotransferase; PFAM: Aminotransferase, class I/classII YP_004397964.1 KEGG: lrl:LC705_01359 hypothetical protein YP_004397966.1 KEGG: lpl:lp_3069 oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase YP_004397967.1 KEGG: oih:OB0329 2O-beta-hydroxysteroid dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004397969.1 KEGG: lbr:LVIS_1825 D-alanyl-D-alanine carboxypeptidase; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal YP_004397970.1 KEGG: lbr:LVIS_0145 transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR YP_004397971.1 PFAM: Mannonate dehydratase; TIGRFAM: Mannonate dehydratase; HAMAP: Mannonate dehydratase; KEGG: lrl:LC705_00047 mannonate dehydratase YP_004397972.1 PFAM: Carbohydrate/purine kinase; KEGG: lrl:LC705_02694 2-dehydro-3-deoxygluconokinase YP_004397973.1 PFAM: Protein of unknown function DUF975; KEGG: lrl:LC705_02840 membrane protein YP_004397974.1 PFAM: Protein of unknown function DUF1836; KEGG: lsa:LSA0962 hypothetical protein YP_004397975.1 PFAM: Hly-III-related; KEGG: ppe:PEPE_0037 hemolysin III-like protein YP_004397976.1 PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: lpl:lp_2559 histidinol dehydrogenase YP_004397977.1 KEGG: lbr:LVIS_B16 hypothetical protein YP_004397979.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ooe:OEOE_0049 arabinose efflux permease YP_004397980.1 PFAM: Major intrinsic protein; KEGG: lbr:LVIS_1619 glycerol uptake facilitator related permease (major intrinsic protein family) YP_004397981.1 PFAM: Protein of unknown function DUF975; KEGG: lcb:LCABL_30440 hypothetical protein YP_004397982.1 PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: lfe:LAF_0815 cystathionine gamma-lyase YP_004397983.1 KEGG: lsa:LSA0122 1,3-propanediol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004397985.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: bts:Btus_0864 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase YP_004397986.1 KEGG: lfe:LAF_1688 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding YP_004397988.1 KEGG: lsa:LSA0421 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004397989.1 KEGG: lsa:LSA0723 hypothetical protein YP_004397991.1 KEGG: lbr:LVIS_0424 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; HAMAP: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4 YP_004397992.1 KEGG: lps:LPST_C1845 hypothetical protein YP_004397993.1 KEGG: lbr:LVIS_1149 beta-lactamase superfamily hydrolase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like YP_004397994.1 KEGG: sgo:SGO_1051 transcriptional regulator Spx; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like YP_004397995.1 KEGG: lbr:LVIS_1147 adaptor protein; HAMAP: Negative regulator of genetic competence, MecA; PFAM: Negative regulator of genetic competence, MecA YP_004397996.1 PFAM: Glycosyl transferase, family 2; KEGG: lcz:LCAZH_0646 glycosyltransferase-like enzyme YP_004397997.1 PFAM: Glycosyl transferase, family 39; KEGG: lcb:LCABL_07740 4-amino-4-deoxy-L-arabinose transferase related glycosyltransferase of PMT family YP_004397998.1 KEGG: lcz:LCAZH_0648 hypothetical protein; manually curated; PFAM: GtrA-like protein YP_004397999.1 KEGG: lcz:LCAZH_0649 OmpR family DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004398000.1 KEGG: lcz:LCAZH_0650 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004398001.1 KEGG: lbr:LVIS_1590 gamma-glutamylcysteine synthetase; PFAM: Glutamate--cysteine ligase YP_004398002.1 PFAM: Competence-induced protein CoiA-like; KEGG: ooe:OEOE_1161 competence protein YP_004398003.1 KEGG: lsl:LSL_0398 oligoendopeptidase F; TIGRFAM: Peptidase M3B, oligoendopeptidase F; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal YP_004398004.1 KEGG: lrf:LAR_0555 hypothetical protein YP_004398005.1 KEGG: lps:LPST_C1838 GTP pyrophosphokinase (putative); PFAM: RelA/SpoT; SMART: RelA/SpoT YP_004398006.1 HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: lbr:LVIS_1472 inorganic polyphosphate/ATP-NAD kinase; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted YP_004398007.1 KEGG: lps:LPST_C1836 pseudouridylate synthase; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004398008.1 PFAM: Methyltransferase type 11; KEGG: lrf:LAR_0563 rRNA large subunit methyltransferase A YP_004398009.1 PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: lbr:LVIS_1459 rRNA methylase (SpoU class) YP_004398010.1 KEGG: lbr:LVIS_1458 DNA segregation ATPase FtsK/SpoIIIE related protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core YP_004398011.1 manually curated YP_004398013.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: efa:EF0988 cell division protein MraZ; PFAM: MraZ domain YP_004398014.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: lfe:LAF_0569 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW YP_004398015.1 KEGG: lbr:LVIS_1453 protein required for the initiation of cell division; TIGRFAM: Cell division protein, FtsL -like; PFAM: Septum formation initiator YP_004398016.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA; KEGG: lbr:LVIS_1452 cell division protein FtsI/penicillin-binding protein 2; SMART: PASTA YP_004398017.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: lps:LPST_C1817 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site YP_004398018.1 PFAM: Mur ligase, central; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: lbr:LVIS_1450 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_004398019.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: lbr:LVIS_1449 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal YP_004398020.1 KEGG: lbr:LVIS_1448 cell division septal protein; manually curated; PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type YP_004398021.1 TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: lbr:LVIS_1447 ATPase for cell division; SMART: Cell division protein FtsA domain YP_004398022.1 TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: lps:LPST_C1812 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain YP_004398023.1 KEGG: lrf:LAR_0575 hypothetical protein; HAMAP: Cell division protein SepF; PFAM: Cell division protein SepF/SepF-related YP_004398024.1 PFAM: Uncharacterised protein family Ycf19; KEGG: lsl:LSL_1045 integral membrane protein YP_004398025.1 KEGG: lps:LPST_C1809 cell division protein (putative); PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004398026.1 KEGG: lbr:LVIS_1442 cell division initiation protein; TIGRFAM: DivIVA domain; PFAM: DivIVA YP_004398027.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: lpl:lp_2187 isoleucyl-tRNA synthetase YP_004398028.1 KEGG: bts:Btus_1957 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004398029.1 PFAM: NUDIX hydrolase domain; KEGG: lbr:LVIS_1439 NUDIX family hydrolase YP_004398030.1 KEGG: lbr:LVIS_1438 small membrane protein YP_004398031.1 TIGRFAM: MTA/SAH nucleosidase; KEGG: lrf:LAR_0582 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase domain YP_004398032.1 KEGG: lbr:LVIS_1436 cysteine sulfinate desulfinase/cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004398033.1 PFAM: Protein of unknown function DUF1831; KEGG: lps:LPST_C1797 hypothetical protein YP_004398034.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: lfe:LAF_0922 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004398035.1 TIGRFAM: Branched-chain amino acid aminotransferase II; KEGG: lps:LPST_C1985 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV YP_004398036.1 KEGG: lps:LPST_C2112 histidinol-phosphatase; TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal YP_004398037.1 HAMAP: ATP phosphoribosyltransferase regulatory subunit; KEGG: lrl:LC705_01462 ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain YP_004398038.1 PFAM: ATP phosphoribosyltransferase, catalytic domain; TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; HAMAP: ATP phosphoribosyltransferase; KEGG: lcz:LCAZH_1422 ATP phosphoribosyltransferase YP_004398039.1 HAMAP: Imidazoleglycerol-phosphate dehydratase; KEGG: lcz:LCAZH_1420 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase YP_004398040.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: lcz:LCAZH_1419 glutamine amidotransferase; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004398041.1 PFAM: Histidine biosynthesis; TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: lme:LEUM_1551 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_004398042.1 PFAM: Histidine biosynthesis; TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Histidine biosynthesis, HisF; KEGG: lpj:JDM1_2055 imidazole glycerol phosphate synthase subunit HisF YP_004398043.1 HAMAP: Phosphoribosyl-AMP cyclohydrolase; KEGG: vpr:Vpar_0130 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase YP_004398044.1 TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Phosphoribosyl-ATP pyrophosphohydrolase; KEGG: lcb:LCABL_16490 phosphoribosyl-ATP pyrophosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like YP_004398045.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: lrl:LC705_01452 histidinol-phosphate aminotransferase YP_004398046.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: lbr:LVIS_1434 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase YP_004398047.1 KEGG: lbr:LVIS_1433 phosphoglycerate mutase family protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004398048.1 KEGG: lrf:LAR_0587 hypothetical protein YP_004398049.1 KEGG: lbr:LVIS_1431 exonuclease V subunit alpha; TIGRFAM: DNA helicase, RecD/TraA type YP_004398050.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: lbr:LVIS_1430 phosphoribosylpyrophosphate synthetase; PFAM: Phosphoribosyltransferase YP_004398051.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: lbr:LVIS_1423 aryl-alcohol dehydrogenase related enzyme YP_004398052.1 KEGG: lbr:LVIS_1422 ribose operon repressor; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004398053.1 TIGRFAM: Ribokinase, bacterial; KEGG: lbr:LVIS_1421 ribokinase family sugar kinase; PFAM: Carbohydrate/purine kinase YP_004398054.1 KEGG: lbr:LVIS_1416 hypothetical protein YP_004398055.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: csh:Closa_2778 ADP-ribosylation/crystallin J1 YP_004398056.1 TIGRFAM: Diacylglycerol/lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; KEGG: lbr:LVIS_1415 diacylglycerol kinase family protein; SMART: Diacylglycerol kinase, catalytic domain YP_004398057.1 TIGRFAM: Ribonuclease J; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; KEGG: lbr:LVIS_1414 mRNA degradation ribonuclease J1/J2enzyme; SMART: Beta-lactamase-like YP_004398058.1 KEGG: lps:LPST_C1781 hypothetical protein; HAMAP: Uncharacterised protein family UPF0356; PFAM: Uncharacterised protein family UPF0356 YP_004398059.1 KEGG: lbr:LVIS_1412 hypothetical protein YP_004398060.1 KEGG: lpl:lp_2918 transcription regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004398061.1 KEGG: lps:LPST_C2276 transport protein; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004398062.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: lbr:LVIS_1411 peptide deformylase; PFAM: Formylmethionine deformylase YP_004398063.1 TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit subgroup x; KEGG: lbr:LVIS_1410 acetoin dehydrogenase complex, E1 component, alpha subunit; PFAM: Dehydrogenase, E1 component YP_004398064.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: lbr:LVIS_1409 acetoin dehydrogenase complex, E1 component, beta subunit; SMART: Transketolase-like, pyrimidine-binding domain YP_004398065.1 KEGG: lbr:LVIS_1408 acetoin/pyruvate dehydrogenase complex, E2 component, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding YP_004398066.1 TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: lbr:LVIS_1407 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004398067.1 PFAM: Uncharacterised protein family UPF0223; KEGG: oih:OB1419 hypothetical protein YP_004398068.1 PFAM: Inositol monophosphatase; KEGG: lps:LPST_C1772 myo-inositol-1(or 4)-monophosphatase YP_004398069.1 TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: lrf:LAR_0614 GTP-binding protein; SMART: Translation elongation factor EFG/EF2, C-terminal YP_004398070.1 PFAM: Cell cycle protein; KEGG: lbr:LVIS_1402 cell division membrane protein YP_004398071.1 PFAM: Uncharacterised protein family UPF0298; KEGG: lbr:LVIS_1401 hypothetical protein YP_004398072.1 KEGG: lpj:JDM1_1790 N6-adenine-specific methylase (putative); TIGRFAM: RNA methyltransferase, RsmD; PFAM: RNA methyltransferase, RsmD YP_004398073.1 PFAM: Cytidylyltransferase; TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: lcr:LCRIS_00856 phosphopantetheine adenylyltransferase YP_004398074.1 KEGG: lbr:LVIS_1398 Lon-like protease YP_004398075.1 TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; PFAM: Soluble ligand binding domain; KEGG: ppe:PEPE_1151 DNA uptake protein related DNA-binding protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1 YP_004398076.1 KEGG: lfe:LAF_0609 competence protein; TIGRFAM: Competence operon E, ComEB; PFAM: CMP/dCMP deaminase, zinc-binding YP_004398077.1 TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: lrf:LAR_0622 DNA internalization-related competence protein ComEC; SMART: Beta-lactamase-like YP_004398078.1 KEGG: lps:LPST_C1757 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_004398079.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: lrf:LAR_0624 30S ribosomal protein S20; PFAM: Ribosomal protein S20 YP_004398080.1 KEGG: ppe:PEPE_1146 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15 YP_004398081.1 KEGG: lbr:LVIS_1391 metallo-beta-lactamase superfamily hydrolase; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like YP_004398082.1 KEGG: lrf:LAR_0627 hypothetical protein YP_004398083.1 KEGG: lbr:LVIS_1389 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal YP_004398084.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: lbr:LVIS_1388 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial YP_004398085.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: lbr:LVIS_1387 ATP-dependent protease ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal YP_004398086.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; Small GTP-binding protein; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: lrf:LAR_0631 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related YP_004398087.1 PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: lbr:LVIS_1385 pyrophosphatase YP_004398088.1 PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: lps:LPST_C0603 argininosuccinate synthase YP_004398089.1 PFAM: Lyase 1, N-terminal; TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: lsl:LSL_0305 argininosuccinate lyase YP_004398090.1 KEGG: lbr:LVIS_1384 hypothetical protein YP_004398091.1 TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Extracellular solute-binding protein, family 3; Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_1200 ABC-type amino acid transport system, permease and periplasmic component; SMART: Extracellular solute-binding protein, family 3 YP_004398092.1 PFAM: ABC transporter-like; KEGG: lsl:LSL_1540 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004398093.1 SMART: Excinuclease ABC, C subunit, N-terminal; TIGRFAM: Excinuclease ABC, C subunit; KEGG: lbr:LVIS_1383 excinuclease ABC subunit C; HAMAP: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein YP_004398094.1 PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTP-binding protein GTP1/OBG, C-terminal; manually curated; TIGRFAM: GTP-binding protein Obg/CgtA; GTP-binding protein GTP1/OBG, C-terminal; KEGG: lbr:LVIS_1382 GTPase ObgE; HAMAP: GTP-binding protein Obg/CgtA YP_004398095.1 PFAM: Acyltransferase 3; KEGG: lbr:LVIS_0279 acyltransferase YP_004398096.1 KEGG: lbr:LVIS_1381 hypothetical protein YP_004398098.1 KEGG: lbr:LVIS_1379 beta-lactamase superfamily hydrolase; PFAM: Beta-lactamase-like; TIGRFAM: Ribonuclease Z; HAMAP: Ribonuclease Z; SMART: Beta-lactamase-like YP_004398099.1 KEGG: lbr:LVIS_1378 hypothetical protein YP_004398100.1 KEGG: lbr:LVIS_1377 single-stranded DNA-specific exonuclease; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; Single-stranded-DNA-specific exonuclease RecJ, C-terminal YP_004398101.1 TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: lsa:LSA1276 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004398102.1 PFAM: SNARE associated Golgi protein; KEGG: lsl:LSL_0438 DedA family protein YP_004398103.1 KEGG: lbr:LVIS_1173 RNA-binding protein; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1 YP_004398104.1 KEGG: lbr:LVIS_2125 hypothetical protein YP_004398105.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398106.1 PFAM: ABC transporter-like; KEGG: lsl:LSL_0582 glutamine transport ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004398107.1 TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Extracellular solute-binding protein, family 3; Binding-protein-dependent transport systems inner membrane component; KEGG: ppe:PEPE_1068 ABC-type amino acid transport system, permease and periplasmic component; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004398108.1 KEGG: lpl:lp_0339 transaminase; PFAM: Aminotransferase, class I/classII YP_004398109.1 PFAM: Peptidase M10, metallopeptidase; KEGG: lbr:LVIS_1825 D-alanyl-D-alanine carboxypeptidase YP_004398110.1 KEGG: lrl:pLC705_00076 predicted ORF YP_004398111.1 KEGG: lin:pli0067 hypothetical protein; PFAM: DNA-repair protein, UmuC-like YP_004398112.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: lpj:JDM1_2934 2-oxo-hept-3-ene-1,7-dioate hydratase; 2-oxo-hept-4-ene-1,7-dioate hydratase YP_004398115.1 KEGG: lbr:LVIS_0266 galactoside O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004398116.1 KEGG: lhe:lhv_0607 hypothetical protein; HAMAP: Uncharacterised protein family UPF0237, ACT domain-containing; PFAM: Amino acid-binding ACT YP_004398117.1 KEGG: lhe:lhv_0606 hypothetical protein; HAMAP: Uncharacterised protein family UPF0210; PFAM: Uncharacterised protein family UPF0210 YP_004398118.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lps:LPST_C1441 acetyltransferase (putative) YP_004398119.1 PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: bmd:BMD_1593 YbaK / prolyl-tRNA synthetases associated domain-containing protein YP_004398120.1 PFAM: YkuD domain; KEGG: lrl:LC705_02528 ErfK/YbiS/YcfS/YnhG family protein YP_004398121.1 KEGG: lmh:LMHCC_1994 putative transcriptional regulator YP_004398122.1 KEGG: lps:LPST_C2789 integral membrane protein (putative) YP_004398123.1 KEGG: lbr:LVIS_B16 hypothetical protein YP_004398124.1 PFAM: Membrane transport protein, MMPL type; KEGG: lrl:LC705_00060 membrane protein YP_004398125.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ckl:CKL_2572 transcriptional regulator YP_004398126.1 PFAM: Protein of unknown function DUF2316; KEGG: pfr:PFREUD_12580 hypothetical protein YP_004398127.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004398128.1 KEGG: ttr:Tter_2101 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Lytic transglycosylase-like, catalytic; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004398129.1 KEGG: lpj:JDM1_2272 aspartate ammonia-lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004398130.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lrh:LGG_00976 cation-transporting ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004398131.1 KEGG: bcl:ABC3242 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004398132.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ppe:PEPE_1677 spermine/spermidine N-acetyltransferase YP_004398133.1 KEGG: sgo:SGO_1394 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain YP_004398134.1 KEGG: lps:LPST_C2646 hypothetical protein YP_004398135.1 TIGRFAM: Phosphonate metabolim protein, transferase hexapeptide repeat family; KEGG: lfe:LAF_0892 hypothetical protein YP_004398136.1 KEGG: lfe:LAF_0891 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004398137.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lrl:LC705_02676 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004398138.1 KEGG: lcb:LCABL_25950 aldehyde dehydrogenase A; PFAM: Aldehyde dehydrogenase domain YP_004398140.1 PFAM: Protein of unknown function DUF81; KEGG: lbr:LVIS_1997 permease YP_004398141.1 KEGG: lrf:LAR_0893 multidrug transport protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004398142.1 KEGG: lbr:LVIS_0039 hypothetical protein YP_004398144.1 KEGG: lga:LGAS_1456 hypothetical protein YP_004398145.1 KEGG: ooe:OEOE_0516 NADH:flavin oxidoreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal YP_004398146.1 PFAM: Nitroreductase-like; KEGG: lde:LDBND_0931 nitroreductase YP_004398147.1 PFAM: Peptidase C69, dipeptidase A; KEGG: lrl:LC705_00035 dipeptidase A YP_004398148.1 KEGG: lbr:LVIS_0690 muramidase (flagellum-specific) YP_004398149.1 TIGRFAM: Phosphoenolpyruvate carboxylase, archaeal-type; HAMAP: Phosphoenolpyruvate carboxylase, archaeal-type; KEGG: ooe:OEOE_1798 phosphoenolpyruvate carboxylase YP_004398150.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: lcz:LCAZH_1114 hypothetical protein YP_004398151.1 KEGG: lrh:LGG_01093 hypothetical protein YP_004398152.1 KEGG: lsl:LSL_1038 hypothetical protein YP_004398153.1 KEGG: lrl:LC705_00202 hypothetical protein YP_004398155.1 PFAM: VanZ-like; KEGG: lfe:LAF_1052 hypothetical protein YP_004398156.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: seq:SZO_16590 hypothetical protein YP_004398159.1 KEGG: cac:CA_C0625 periplasmic aspartyl protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004398160.1 KEGG: lmh:LMHCC_0710 hypothetical protein YP_004398161.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004398163.1 PFAM: Major facilitator superfamily MFS-1; KEGG: ooe:OEOE_0049 arabinose efflux permease YP_004398164.1 KEGG: lsa:LSA1218 haloacid dehalogenase family hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004398165.1 KEGG: lbr:LVIS_0240 hypothetical protein YP_004398166.1 KEGG: lps:LPST_C2065 response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004398167.1 KEGG: lbr:LVIS_1315 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004398169.1 KEGG: lbr:LVIS_2082 hypothetical protein; TIGRFAM: Bacterial surface protein 26-residue repeat; PFAM: Protein of unknown function DUF285, lipoprotein predicted YP_004398170.1 KEGG: aat:D11S_1414 MmcQ protein YP_004398172.1 KEGG: lps:LPST_C1986 hypothetical protein YP_004398173.1 PFAM: Beta-lactamase-related; KEGG: lbr:LVIS_1294 beta-lactamase class C related penicillin binding protein YP_004398174.1 PFAM: CobB/CobQ-like glutamine amidotransferase; KEGG: ppe:PEPE_1333 glutamine amidotransferase YP_004398175.1 PFAM: Domain of unknown function DUF1727; Mur ligase, central; KEGG: lbr:LVIS_1292 UDP-N-acetylmuramyl tripeptide synthase YP_004398176.1 HAMAP: Thymidine kinase, subgroup; KEGG: lps:LPST_C1979 thymidine kinase; PFAM: Thymidine kinase YP_004398177.1 SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: lbr:LVIS_1290 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor YP_004398178.1 KEGG: lps:LPST_C1977 protoporphyrinogen oxidase (putative); TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small YP_004398179.1 KEGG: lpj:JDM1_1986 SUA5 family translation factor; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5 YP_004398180.1 KEGG: lbr:LVIS_1287 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase YP_004398181.1 TIGRFAM: Uracil phosphoribosyl transferase; KEGG: efa:EF2549 uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004398182.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATPase, F0 complex, subunit A; KEGG: lbr:LVIS_1285 F0F1-type ATP synthase, subunit A; PFAM: ATPase, F0 complex, subunit A YP_004398183.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: lbr:LVIS_1284 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C YP_004398184.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: lbr:LVIS_1283 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast YP_004398185.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: lbr:LVIS_1282 F0F1 ATP synthase subunit delta; PFAM: ATPase, F1 complex, OSCP/delta subunit YP_004398186.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: lsl:LSL_0598 F0F1 ATP synthase subunit alpha; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal YP_004398187.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATPase, F1 complex, gamma subunit; KEGG: lbr:LVIS_1280 F0F1-type ATP synthase, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit YP_004398188.1 KEGG: lrf:LAR_0457 F0F1 ATP synthase subunit beta; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; TIGRFAM: ATPase, F1 complex, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; SMART: ATPase, AAA+ type, core YP_004398189.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: lps:LPST_C1963 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal YP_004398190.1 KEGG: lbr:LVIS_1277 hypothetical protein; TIGRFAM: Conserved hypothetical protein, integral membrane YwzB; PFAM: Conserved hypothetical protein, integral membrane YwzB YP_004398191.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: lbr:LVIS_1276 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004398192.1 KEGG: lrf:LAR_0460 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004398193.1 TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: lbr:LVIS_1274 hypothetical protein; PFAM: Protein of unknown function DUF37 YP_004398194.1 KEGG: lfe:LAF_0447 hypothetical protein YP_004398195.1 PFAM: Cell cycle protein; KEGG: lbr:LVIS_1272 cell division membrane protein YP_004398196.1 PFAM: Glycine cleavage H-protein; KEGG: lbr:LVIS_1271 glycine cleavage system H protein (lipoate-binding) YP_004398197.1 PFAM: ABC transporter-like; NIL domain; KEGG: lps:LPST_C1955 amino acid ABC transporter, ATP-binding protein; SMART: NIL domain; ATPase, AAA+ type, core YP_004398198.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lps:LPST_C1954 amino acid ABC transporter, permease protein YP_004398199.1 PFAM: NLPA lipoprotein; KEGG: lps:LPST_C1953 ABC superfamily ATP binding cassette transporter, binding protein YP_004398200.1 KEGG: lps:LPST_C1346 SPFH domain/band 7 family protein; PFAM: Band 7 protein; SMART: Band 7 protein YP_004398201.1 PFAM: ABC transporter-like; KEGG: lps:LPST_C2249 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004398202.1 PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: lsa:LSA0128 peptide ABC transporter permease/transmembrane protein YP_004398203.1 KEGG: lps:LPST_C2252 transcription regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004398204.1 KEGG: lps:LPST_C2253 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004398205.1 KEGG: lps:LPST_C2254 ABC transporter, permease protein YP_004398206.1 PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: lbr:LVIS_1268 D-alanyl-alanine synthetase A YP_004398207.1 KEGG: ppe:PEPE_0040 glycerophosphoryl diester phosphodiesterase YP_004398208.1 PFAM: Methyladenine glycosylase; KEGG: lbr:LVIS_1965 3-methyladenine DNA glycosylase YP_004398209.1 KEGG: lfe:LAF_0452 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004398210.1 PFAM: UspA; KEGG: lps:LPST_C1945 hypothetical protein YP_004398212.1 KEGG: lbr:LVIS_1263 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004398213.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: lps:LPST_C1931 30S ribosomal protein S4; SMART: RNA-binding S4 YP_004398214.1 PFAM: GAF; KEGG: lsl:LSL_1076 GAF domain-containing protein YP_004398215.1 PFAM: Septation ring formation regulator, EzrA; KEGG: lbr:LVIS_1257 septation ring formation regulator EzrA YP_004398216.1 KEGG: lps:LPST_C1927 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase YP_004398217.1 SMART: THUMP; TIGRFAM: Thiamine biosynthesis protein; KEGG: lbr:LVIS_1255 thiamine biosynthesis ATP pyrophosphatase; HAMAP: Thiamine biosynthesis protein; PFAM: Thiamine biosynthesis protein, C-terminal; THUMP YP_004398218.1 PFAM: Redoxin; KEGG: lbr:LVIS_1254 peroxiredoxin YP_004398219.1 TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: lbr:LVIS_1253 valyl-tRNA synthetase YP_004398220.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: lps:LPST_C1922 folylpolyglutamate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central YP_004398221.1 KEGG: lbr:LVIS_1250 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl YP_004398222.1 KEGG: lrf:LAR_0499 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC YP_004398223.1 KEGG: lbr:LVIS_1248 cell shape-determining protein; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD YP_004398224.1 KEGG: lbr:LVIS_1247 septum formation inhibitor; HAMAP: Septum formation inhibitor MinC; PFAM: Septum formation inhibitor MinC, C-terminal YP_004398225.1 KEGG: lbr:LVIS_1246 septum formation inhibitor-activating ATPase; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase YP_004398226.1 KEGG: lbr:LVIS_1245 ABC-type amino acid transport system, permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004398227.1 PFAM: ABC transporter-like; KEGG: lrf:LAR_0502 glutamine ABC transporter ATP-binding component; SMART: ATPase, AAA+ type, core YP_004398228.1 KEGG: lbr:LVIS_1243 amino acid ABC transporter periplasmic protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004398229.1 PFAM: Peptidase M16, C-terminal; KEGG: lpj:JDM1_1930 hypothetical protein YP_004398230.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: lbr:LVIS_1241 Zn-dependent peptidase YP_004398231.1 KEGG: lbr:LVIS_1240 Xre-like DNA-binding protein YP_004398232.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: lps:LPST_C1907 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_004398233.1 KEGG: lps:LPST_C1906 competence/damage-inducible protein CinA; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal YP_004398234.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: lps:LPST_C1905 recombinase A; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA YP_004398235.1 SMART: Metal-dependent phosphohydrolase, HD domain; K Homology; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Uncharacterised protein family HDIG; KEGG: lpj:JDM1_1924 phosphodiesterase; HAMAP: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; K Homology, type 1, subgroup YP_004398236.1 KEGG: lbr:LVIS_1234 calcineurin-like phosphoesterase; TIGRFAM: Conserved hypothetical protein CHP00282; PFAM: Metallo-dependent phosphatase YP_004398237.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: lbr:LVIS_1233 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, clamp YP_004398238.1 SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: lbr:LVIS_1232 DNA mismatch repair protein; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain YP_004398239.1 SMART: Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Bacterial DNA recombination protein RuvA; KEGG: lsa:LSA0366 Holliday junction DNA helicase RuvA; HAMAP: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal YP_004398240.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: lbr:LVIS_1230 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal YP_004398241.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: Queuosine biosynthesis protein; KEGG: lps:LPST_C1894 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein YP_004398242.1 PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: lps:LPST_C1893 queuine tRNA-ribosyltransferase YP_004398243.1 manually curated; TIGRFAM: Preprotein translocase YajC; KEGG: lps:LPST_C1892 translocase subunit; PFAM: Preprotein translocase YajC YP_004398244.1 PFAM: DNA-repair protein, UmuC-like; manually curated; KEGG: lps:LPST_C1891 DNA-directed DNA polymerase IV; HAMAP: DNA polymerase IV YP_004398245.1 KEGG: lbr:LVIS_1225 phosphoesterase, DHH family protein; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1 YP_004398246.1 KEGG: lbr:LVIS_1224 superfamily II DNA/RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398247.1 TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: lpj:JDM1_1909 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004398248.1 KEGG: lbr:LVIS_1222 hypothetical protein; HAMAP: Uncharacterised protein family UPF0297; PFAM: Uncharacterised protein family UPF0297 YP_004398249.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: lbr:LVIS_1221 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like YP_004398250.1 KEGG: lbr:LVIS_1220 hypothetical protein; HAMAP: Uncharacterised protein family UPF0473; PFAM: Uncharacterised protein family UPF0473 YP_004398251.1 KEGG: lpl:lp_2272 hypothetical protein YP_004398252.1 PFAM: Colicin V production, CvpA; KEGG: lbr:LVIS_1218 membrane ancor connecting MutS2 with cell-division Z-ring YP_004398253.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; TIGRFAM: DNA mismatch repair protein MutS, type 2; KEGG: lbr:LVIS_1217 MutS family ATPase; HAMAP: DNA mismatch repair protein MutS, type 2; PFAM: Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS, C-terminal YP_004398254.1 KEGG: lbr:LVIS_1216 thiol-disulfide isomerase and thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain YP_004398255.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398256.1 PFAM: Protein of unknown function DUF2507; KEGG: lps:LPST_C1881 hypothetical protein YP_004398257.1 PFAM: Asp/Glu/hydantoin racemase; TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: lbr:LVIS_1214 glutamate racemase YP_004398258.1 PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase; KEGG: lps:LPST_C1879 xanthosine triphosphate pyrophosphatase YP_004398259.1 KEGG: lrf:LAR_0529 putative phosphoesterase; TIGRFAM: Phosphodiesterase MJ0936; PFAM: Metallo-dependent phosphatase YP_004398260.1 PFAM: Cystathionine beta-synthase, core; KEGG: lsl:LSL_0467 CBS domain-containing protein YP_004398261.1 PFAM: Mechanosensitive ion channel MscS; KEGG: lbr:LVIS_1207 small-conductance mechanosensitive channel YP_004398262.1 PFAM: Uncharacterised protein family UPF0478; KEGG: lbr:LVIS_1206 methyl-accepting chemotaxis-like protein YP_004398263.1 KEGG: lps:LPST_C1872 hypothetical protein YP_004398264.1 KEGG: lrf:LAR_0535 Xaa-Pro dipeptidase; PFAM: Peptidase M24, structural domain; Creatinase YP_004398265.1 TIGRFAM: Catabolite control protein A; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; KEGG: lbr:LVIS_1203 catabolite control protein A; SMART: HTH transcriptional regulator, LacI YP_004398266.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: lbr:LVIS_1199 hypothetical protein; PFAM: Protein of unknown function DUF28 YP_004398267.1 PFAM: Type II secretion system protein E; KEGG: lrf:LAR_0539 competence protein YP_004398268.1 KEGG: lsl:LSL_0425 ComG operon protein 2; manually curated; PFAM: Type II secretion system F domain YP_004398269.1 KEGG: lbr:LVIS_1196 competence protein ComGC YP_004398270.1 KEGG: lfe:LAF_0547 hypothetical protein YP_004398273.1 KEGG: lbr:LVIS_1191 adenine-specific DNA methylase YP_004398274.1 PFAM: Acetate/butyrate kinase; TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: lbr:LVIS_1190 acetate kinase YP_004398275.1 PFAM: Amino acid permease domain; KEGG: lpj:JDM1_1878 amino acid transport protein YP_004398276.1 KEGG: lpj:JDM1_1876 phosphoesterase (putative) YP_004398277.1 PFAM: Metallo-dependent phosphatase; KEGG: lbr:LVIS_1186 5'-nucleotidase/2',3'-cyclic phosphodiesterase related esterase YP_004398278.1 PFAM: Protein of unknown function DUF1027; KEGG: lbr:LVIS_1185 hypothetical protein YP_004398279.1 KEGG: lbr:LVIS_1184 HAD family sugar phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA, hypothetical 1; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004398280.1 KEGG: lbr:LVIS_1183 hypothetical protein; TIGRFAM: Integral membrane protein 1906; PFAM: Integral membrane protein 1906 YP_004398281.1 PFAM: Phage shock domain; KEGG: lps:LPST_C0104 stress-responsive transcription regulator (putative) YP_004398283.1 TIGRFAM: Hydroxymethylglutaryl-CoA synthase, prokaryotic; KEGG: lpl:lp_2067 hydroxymethylglutaryl-CoA synthase; PFAM: Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; Hydroxymethylglutaryl-coenzyme A synthase C-terminal YP_004398284.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: Peptidase S24, LexA repressor; KEGG: lps:LPST_C1652 LexA repressor; PFAM: LexA, DNA-binding domain; Peptidase S24/S26A/S26B, conserved region YP_004398285.1 KEGG: lps:LPST_C1651 protein of hypothetical function DUF896; HAMAP: Uncharacterised protein family UPF0291; PFAM: Uncharacterised protein family UPF0291 YP_004398286.1 KEGG: ppe:PEPE_0872 hypothetical protein; HAMAP: Uncharacterised protein family UPF0154; PFAM: Uncharacterised protein family UPF0154 YP_004398287.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398288.1 KEGG: lsl:LSL_0508 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004398289.1 PFAM: Methyltransferase small; KEGG: lpj:JDM1_1721 methyltransferase (putative) YP_004398290.1 PFAM: Excinuclease ABC, C subunit, N-terminal; KEGG: lbr:LVIS_1353 URI-like endonuclease YP_004398291.1 KEGG: lbr:LVIS_1352 lactate dehydrogenase related 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004398292.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398293.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: lbr:LVIS_1351 HAD superfamily hydrolase YP_004398294.1 KEGG: lbr:LVIS_1350 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2 YP_004398295.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Translation elongation factor EFTs/EF1B; KEGG: lps:LPST_C1644 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal YP_004398296.1 TIGRFAM: Uridylate kinase, bacteria; KEGG: lps:LPST_C1643 uridylate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004398297.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: lps:LPST_C1642 ribosome recycling factor; PFAM: Ribosome recycling factor YP_004398298.1 KEGG: lbr:LVIS_1346 hypothetical protein YP_004398299.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: lbr:LVIS_1345 undecaprenyl pyrophosphate synthase YP_004398300.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: lbr:LVIS_1344 CDP-diglyceride synthetase YP_004398301.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: lbr:LVIS_1343 membrane-associated Zn-dependent protease 1; SMART: PDZ/DHR/GLGF YP_004398302.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: lbr:LVIS_1342 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding YP_004398303.1 SMART: Exonuclease; Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit, Gram-positive type; DNA polymerase III, epsilon subunit; KEGG: lbr:LVIS_1341 DNA polymerase III PolC; HAMAP: DNA polymerase III polC-type; PFAM: Bacterial DNA polymerase III, alpha subunit; Exonuclease, RNase T/DNA polymerase III; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004398304.1 KEGG: lbr:LVIS_1339 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP YP_004398305.1 TIGRFAM: Transcription termination factor NusA; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: lps:LPST_C1633 transcription elongation factor NusA; SMART: RNA-binding domain, S1; K Homology YP_004398306.1 PFAM: Protein of unknown function DUF448; KEGG: lbr:LVIS_1337 nucleic-acid-binding protein implicated in transcription termination YP_004398307.1 PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: efa:EF1273 ribosomal protein L7A family protein YP_004398308.1 KEGG: lpj:JDM1_1704 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2 YP_004398309.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: lps:LPST_C1629 ribosome-binding factor A; PFAM: Ribosome-binding factor A YP_004398310.1 TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: lbr:LVIS_1333 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II YP_004398311.1 SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: lbr:LVIS_1332 FAD synthase; PFAM: FAD synthetase; Riboflavin kinase YP_004398312.1 TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: lbr:LVIS_1331 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; HTH transcriptional regulator, DeoR N-terminal YP_004398313.1 KEGG: lsa:LSA1237 heat shock protein GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor YP_004398314.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: lbr:LVIS_1329 molecular chaperone; PFAM: Heat shock protein 70 YP_004398315.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: lbr:LVIS_1328 chaperone protein DnaJ; HAMAP: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich domain YP_004398316.1 SMART: Translation elongation factor EFG/EF2, C-terminal; TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; KEGG: lbr:LVIS_1322 GTP-binding protein LepA; HAMAP: GTP-binding protein LepA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA, C-terminal YP_004398319.1 KEGG: lbr:LVIS_0724 hypothetical protein YP_004398320.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: lfe:LAF_0808 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA YP_004398321.1 KEGG: lsa:LSA0735 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E YP_004398322.1 SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; TIGRFAM: RelA/SpoT protein; KEGG: lbr:LVIS_0728 guanosine polyphosphate pyrophosphohydrolase/synthetase; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD subdomain; TGS YP_004398323.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: lbr:LVIS_0729 D-Tyr-tRNAtyr deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_004398324.1 KEGG: lbr:LVIS_0730 P-Ser-HPr phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004398325.1 KEGG: lbr:LVIS_0732 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SH3, type 3; SMART: Cell wall hydrolase/autolysin, catalytic; SH3-like domain, bacterial YP_004398326.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: lbr:LVIS_0735 histidyl-tRNA synthetase YP_004398327.1 TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: lbr:LVIS_0736 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain YP_004398328.1 PFAM: Domain of unknown function DUF2179; Protein of unknown function DUF161; KEGG: lps:LPST_C1594 integral membrane protein YP_004398329.1 PFAM: CDP-glycerol glycerophosphotransferase; KEGG: lbr:LVIS_0739 glycosyl/glycerophosphate transferase YP_004398330.1 PFAM: ABC-2 type transporter; KEGG: lbr:LVIS_0740 ABC-type polysaccharide/polyol phosphate export system, permease component YP_004398331.1 KEGG: lbr:LVIS_0741 glycosyl/glycerophosphate transferase; PFAM: CDP-glycerol glycerophosphotransferase YP_004398332.1 KEGG: lbr:LVIS_0742 endonuclease IV; PFAM: Xylose isomerase, TIM barrel domain; TIGRFAM: Endodeoxyribonuclease IV; HAMAP: Endodeoxyribonuclease IV; SMART: Endodeoxyribonuclease IV YP_004398333.1 KEGG: lbr:LVIS_0743 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted YP_004398334.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: ppe:PEPE_1109 30S ribosomal protein S21; PFAM: Ribosomal protein S21 YP_004398335.1 KEGG: lfe:LAF_0836 hypothetical protein YP_004398336.1 PFAM: PhoH-like protein; KEGG: lbr:LVIS_0748 phosphate starvation-inducible protein PhoH, ATPase YP_004398337.1 TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: lbr:LVIS_0749 metal-dependent hydrolase; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted YP_004398338.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: lbr:LVIS_0750 diacylglycerol kinase YP_004398339.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: lbr:LVIS_0751 GTPase; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2 YP_004398340.1 TIGRFAM: Recombination protein O, RecO; HAMAP: Recombination protein O, RecO; KEGG: lbr:LVIS_0752 recombinational DNA repair protein (RecF pathway); PFAM: Recombination protein O, RecO YP_004398341.1 PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: lbr:LVIS_0753 glycyl-tRNA synthetase subunit alpha YP_004398342.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: lbr:LVIS_0754 glycyl-tRNA synthetase subunit beta YP_004398343.1 KEGG: lbr:LVIS_0755 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain YP_004398344.1 KEGG: lcz:LCAZH_1494 DNA-directed RNA polymerase sigma70/sigma32 subunit; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 4 YP_004398345.1 PFAM: Protein of unknown function DUF633; KEGG: lps:LPST_C1530 SAM-dependent methyltransferase YP_004398346.1 KEGG: lsa:LSA0887 hypothetical protein; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3 YP_004398347.1 PFAM: Peptidase M20, dimerisation; Peptidase M20; TIGRFAM: Peptidase M20B, tripeptide aminopeptidase; HAMAP: Peptidase M20B, tripeptide aminopeptidase; KEGG: lbr:LVIS_0761 peptidase T YP_004398348.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: lbr:LVIS_0762 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones; SMART: ATPase, AAA+ type, core YP_004398349.1 KEGG: apr:Apre_1234 alpha/beta hydrolase fold protein YP_004398350.1 KEGG: lbr:LVIS_0350 hypothetical protein YP_004398351.1 SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: lbr:LVIS_0763 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004398352.1 TIGRFAM: Pyruvate kinase; KEGG: lbr:LVIS_0765 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; PEP-utilising enzyme, mobile domain YP_004398353.1 KEGG: lbr:LVIS_0766 RNA-binding protein YP_004398354.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: lps:LPST_C1520 integrase/recombinase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004398355.1 KEGG: lsl:LSL_0941 RibT protein YP_004398356.1 KEGG: lbr:LVIS_0769 hypothetical protein; HAMAP: Prokaryotic chromosome segregation/condensation protein ScpA; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA YP_004398357.1 TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; HAMAP: Chromosome segregation/condensation protein ScpB, prokaryote; KEGG: lme:LEUM_1297 condensin subunit ScpB; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote YP_004398358.1 TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: ppe:PEPE_1084 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4 YP_004398359.1 KEGG: lbr:LVIS_0772 hypothetical protein YP_004398360.1 KEGG: lps:LPST_C1514 hypothetical protein YP_004398361.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: lmh:LMHCC_0614 ATP-dependent DNA helicase, RecQ; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398362.1 KEGG: lbr:LVIS_0775 LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004398363.1 TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: ppe:PEPE_1080 cytidylate kinase; PFAM: Cytidylate kinase domain YP_004398364.1 KEGG: lps:LPST_C1510 30S ribosomal protein S1; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1 YP_004398365.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: lbr:LVIS_0778 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related YP_004398366.1 KEGG: lfe:LAF_0882 DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein YP_004398367.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; Tetratricopeptide TPR-3; KEGG: lbr:LVIS_0780 TPR repeat-containing protein YP_004398368.1 PFAM: Domain of unknown function DUF2179; Protein of unknown function DUF161; KEGG: lbr:LVIS_0781 hypothetical protein YP_004398369.1 KEGG: ppe:PEPE_1072 tRNA nucleotidyltransferase/poly(A) polymerase; HAMAP: tRNA nucleotidyltransferase, firmicutes; PFAM: Poly A polymerase, head domain YP_004398370.1 KEGG: lbr:LVIS_0783 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004398371.1 PFAM: Thymidylate synthase; TIGRFAM: Thymidylate synthase; HAMAP: Thymidylate synthase; KEGG: lca:LSEI_1387 thymidylate synthase YP_004398372.1 PFAM: Dihydrofolate reductase domain; KEGG: lbr:LVIS_0785 dihydrofolate reductase YP_004398373.1 KEGG: lbr:LVIS_0787 hypothetical protein; TIGRFAM: DegV; PFAM: DegV YP_004398374.1 PFAM: Lipase, GDSL; KEGG: lsl:LSL_0714 lipase/acylhydrolase YP_004398375.1 PFAM: Protein of unknown function DUF2140; KEGG: lbr:LVIS_0789 hypothetical protein YP_004398376.1 KEGG: lsl:LSL_0716 hypothetical protein; HAMAP: Uncharacterised protein family UPF0346; PFAM: YozE-like domain YP_004398377.1 KEGG: lbr:LVIS_0795 GTPase; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related YP_004398378.1 KEGG: ljf:FI9785_1100 hypothetical protein; PFAM: Ribonuclease HII/HIII YP_004398379.1 KEGG: lbr:LVIS_0797 Rossmann fold nucleotide-binding protein for DNA uptake; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A YP_004398380.1 SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial-type; KEGG: lbr:LVIS_0798 DNA topoisomerase I; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger YP_004398381.1 PFAM: Peptidase C69, dipeptidase A; KEGG: ooe:OEOE_1783 dipeptidase A YP_004398382.1 PFAM: Peptidase C69, dipeptidase A; KEGG: lbr:LVIS_0900 dipeptidase YP_004398383.1 PFAM: 4-oxalocrotonate tautomerase; KEGG: lpj:JDM1_1441 4-oxalocrotonate tautomerase YP_004398384.1 PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: lbr:LVIS_0897 glycerol kinase YP_004398385.1 KEGG: lbr:LVIS_0863 HAD superfamily hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004398386.1 TIGRFAM: Nop2p; KEGG: lbr:LVIS_0862 tRNA and rRNA cytosine-C5-methylase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p YP_004398387.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Isopentenyl-diphosphate delta-isomerase, FMN-dependent; HAMAP: Isopentenyl-diphosphate delta-isomerase, FMN-dependent; KEGG: lbr:LVIS_0861 isopentenyl pyrophosphate isomerase YP_004398388.1 KEGG: lsl:LSL_0683 phosphomevalonate kinase; TIGRFAM: Phosphomevalonate kinase, Gram-positive; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004398389.1 TIGRFAM: Diphosphomevalonate decarboxylase; KEGG: lbr:LVIS_0859 phosphomevalonate kinase; PFAM: GHMP kinase YP_004398390.1 TIGRFAM: Mevalonate kinase; KEGG: lbr:LVIS_0858 mevalonate kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004398391.1 TIGRFAM: DnaQ exonuclease/DinG helicase; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: lbr:LVIS_0857 Rad3-related DNA helicase; SMART: Exonuclease; Helicase, ATP-dependent, c2 type YP_004398392.1 KEGG: lsl:LSL_0687 hypothetical protein YP_004398393.1 KEGG: lps:LPST_C1391 aspartate aminotransferase; PFAM: Aminotransferase, class I/classII YP_004398394.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Asparaginyl-tRNA synthetase, class IIb; HAMAP: Asparaginyl-tRNA synthetase, class IIb; KEGG: lps:LPST_C1392 asparaginyl-tRNA synthetase YP_004398395.1 TIGRFAM: Replication protein, DnaD/DnaB domain; KEGG: lps:LPST_C1393 DNA replication protein DnaD YP_004398396.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: lbr:LVIS_0851 membrane carboxypeptidase (penicillin-binding protein); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004398397.1 TIGRFAM: Resolvase, Holliday junction-type, RecU; HAMAP: Resolvase, Holliday junction-type, RecU; KEGG: lps:LPST_C1403 recombination protein U; PFAM: Resolvase, Holliday junction-type, RecU YP_004398398.1 KEGG: lps:LPST_C1404 hypothetical protein; HAMAP: Uncharacterised protein family UPF0398; PFAM: Uncharacterised protein family UPF0398 YP_004398399.1 TIGRFAM: DivIVA domain; HAMAP: Cell cycle protein GpsB; KEGG: lps:LPST_C1405 cell division initiation protein DivIVA; PFAM: DivIVA YP_004398400.1 PFAM: Putative RNA methylase; KEGG: lps:LPST_C1406 hypothetical protein; SMART: THUMP YP_004398401.1 PFAM: Ribonuclease H domain; KEGG: lsl:LSL_0840 ribonuclease HI / cell wall enzyme EBSB YP_004398402.1 KEGG: lbr:LVIS_0835 pore-forming protein YP_004398403.1 HAMAP: Formate-tetrahydrofolate ligase, FTHFS; KEGG: lsl:LSL_0842 formate--tetrahydrofolate ligase; PFAM: Formate-tetrahydrofolate ligase, FTHFS YP_004398404.1 TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: ppe:PEPE_0940 signal peptidase II; PFAM: Peptidase A8, signal peptidase II YP_004398405.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: lps:LPST_C1424 pseudouridylate synthase; SMART: RNA-binding S4 YP_004398406.1 HAMAP: Bifunctional protein PyrR; KEGG: lbr:LVIS_0831 pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004398407.1 TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: lbr:LVIS_0830 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal YP_004398408.1 KEGG: lbr:LVIS_0829 carbamoylphosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Carbamoyl-phosphate synthetase, large subunit, oligomerisation YP_004398409.1 PFAM: Fibronectin-binding A, N-terminal; Domain of unknown function DUF814; KEGG: lbr:LVIS_0828 fibronectin-binding protein YP_004398410.1 KEGG: lbr:LVIS_0827 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004398411.1 KEGG: lbr:LVIS_0824 hypothetical protein; TIGRFAM: DegV; PFAM: DegV YP_004398413.1 KEGG: lbr:LVIS_0823 hypothetical protein YP_004398414.1 TIGRFAM: Dihydroneopterin aldolase subgroup; Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: ldb:Ldb0246 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase YP_004398415.1 PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM: GTP cyclohydrolase I; 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; HAMAP: GTP cyclohydrolase I; KEGG: lde:LDBND_0875 GTP cyclohydrolase I YP_004398416.1 TIGRFAM: Folylpolyglutamate synthetase; KEGG: lde:LDBND_0876 folylpolyglutamate synthase; PFAM: Mur ligase, C-terminal; Mur ligase, central YP_004398417.1 TIGRFAM: Dihydropteroate synthase; KEGG: lbu:LBUL_0211 dihydropteroate synthase; PFAM: Pterin-binding YP_004398418.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004398419.1 PFAM: NUDIX hydrolase domain; KEGG: lde:LDBND_0878 NUDIX family hydrolase YP_004398420.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bad:BAD_1608 acetyltransferase YP_004398421.1 PFAM: LicD-like; KEGG: lps:LPST_C0662 lipopolysaccharide biosynthesis protein LicD YP_004398422.1 PFAM: Integrase, catalytic core, phage; KEGG: lbr:LVIS_0812 site-specific tyrosine recombinase XerS YP_004398423.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; KEGG: lbr:LVIS_1945 A/G-specific DNA glycosylase; SMART: HhH-GPD domain YP_004398424.1 PFAM: Peptide methionine sulphoxide reductase MsrA; TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: ppe:PEPE_0953 peptide methionine sulfoxide reductase YP_004398425.1 PFAM: Methionine sulphoxide reductase B; TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Methionine sulphoxide reductase B; KEGG: lps:LPST_C1472 peptide-methionine (R)-S-oxide reductase YP_004398426.1 HAMAP: Manganese-dependent inorganic pyrophosphatase, probable; KEGG: lsl:LSL_0833 putative manganese-dependent inorganic pyrophosphatase; PFAM: DHHA2; Phosphoesterase, RecJ-like YP_004398427.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: lbr:LVIS_0806 transcriptional regulator YP_004398428.1 SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-positive; KEGG: lbr:LVIS_0805 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel YP_004398429.1 SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; TIGRFAM: DNA topoisomerase IV, subunit B, Gram-positive; KEGG: lps:LPST_C1476 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal YP_004398430.1 TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; KEGG: lbr:LVIS_0803 membrane protein; PFAM: Glycerol-3-phosphate acyltransferase, bacteria YP_004398431.1 PFAM: Aldose 1-epimerase; KEGG: lpj:JDM1_1550 hypothetical protein YP_004398432.1 TIGRFAM: Heat shock protein HslU; PFAM: ATPase, AAA-2; KEGG: lbr:LVIS_0801 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core YP_004398433.1 TIGRFAM: ATP-dependent protease, HslV subunit; HAMAP: ATP-dependent protease, HslV subunit; KEGG: lbr:LVIS_0800 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta YP_004398434.1 TIGRFAM: Tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; KEGG: lbr:LVIS_0799 integrase; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage YP_004398435.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: lbr:LVIS_0939 50S ribosomal protein L19; PFAM: Ribosomal protein L19 YP_004398436.1 PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: lbr:LVIS_0940 tRNA (guanine-N(1)-)-methyltransferase YP_004398437.1 TIGRFAM: 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; KEGG: lbr:LVIS_0941 16S rRNA-processing protein RimM; PFAM: RimM protein; PRC-barrel YP_004398438.1 KEGG: lbr:LVIS_0942 RNA-binding protein YP_004398439.1 TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: lbr:LVIS_0943 30S ribosomal protein S16; PFAM: Ribosomal protein S16 YP_004398440.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: lpj:JDM1_1374 signal recognition particle protein Ffh; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004398441.1 KEGG: lbr:LVIS_0949 putative DNA-binding protein; HAMAP: Putative helix-turn-helix protein, YlxM/p13-like; PFAM: Putative helix-turn-helix protein, YlxM/p13-like YP_004398442.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: lrf:LAR_1090 signal recognition particle receptor; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core YP_004398443.1 TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; SMCs flexible hinge; KEGG: lbr:LVIS_0951 chromosome segregation ATPase; SMART: SMCs flexible hinge YP_004398444.1 KEGG: lbr:LVIS_0952 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding YP_004398445.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: lbr:LVIS_0953 acyl carrier protein; PFAM: Phosphopantetheine-binding YP_004398446.1 TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; HAMAP: Phospholipid biosynthesis protein, PlsX-like; KEGG: lbr:LVIS_0954 putative glycerol-3-phosphate acyltransferase PlsX; PFAM: Fatty acid synthesis PlsX protein YP_004398447.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: lbr:LVIS_0955 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398448.1 KEGG: lbr:LVIS_0956 dihydroxyacetone kinase-like protein; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: Dak phosphatase YP_004398449.1 PFAM: Alkaline shock protein Asp23; KEGG: lps:LPST_C1290 hypothetical protein YP_004398450.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: lbr:LVIS_0958 ribosomal protein L28; PFAM: Ribosomal protein L28 YP_004398451.1 KEGG: lbr:LVIS_0959 thiamine pyrophosphokinase; TIGRFAM: Thiamin pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic domain YP_004398452.1 TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: lbr:LVIS_0960 pentose-5-phosphate-3-epimerase; PFAM: Ribulose-phosphate 3-epimerase YP_004398453.1 TIGRFAM: Ribosome biogenesis GTPase RsgA, putative; HAMAP: Ribosome biogenesis GTPase RsgA, putative; KEGG: lbr:LVIS_0961 GTPase; PFAM: Ribosome biogenesis GTPase RsgA, putative YP_004398454.1 PFAM: Serine/threonine-protein kinase-like domain; PASTA; KEGG: lbr:LVIS_0962 serine/threonine kinase protein; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; PASTA YP_004398455.1 KEGG: lpl:lp_1618 serine/threonine specific protein phosphatase (putative); PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-like YP_004398456.1 KEGG: lpj:JDM1_1357 rRNA methylase (putative); TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44 YP_004398457.1 PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: lps:LPST_C1281 methionyl-tRNA formyltransferase YP_004398458.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: lbr:LVIS_0966 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398459.1 TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: lps:LPST_C1279 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein YP_004398460.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: lbr:LVIS_0968 DNA-directed RNA polymerase, subunit K/omega; PFAM: RNA polymerase, subunit omega/K/RPABC2 YP_004398461.1 KEGG: lfe:LAF_1255 guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: Guanylate kinase, sub-group; HAMAP: Guanylate kinase, sub-group; SMART: Guanylate kinase/L-type calcium channel YP_004398463.1 KEGG: lpj:JDM1_1346 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC YP_004398464.1 KEGG: lps:LPST_C1270 arginine catabolic regulator; HAMAP: Arginine repressor; PFAM: Arginine repressor, DNA-binding domain; Arginine repressor, C-terminal YP_004398465.1 KEGG: lps:LPST_C1269 hemolysin-like protein; TIGRFAM: Haemolysin A; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 YP_004398466.1 KEGG: lpj:JDM1_1343 geranyltranstransferase; PFAM: Polyprenyl synthetase YP_004398467.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: lps:LPST_C1267 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit YP_004398468.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: lpj:JDM1_1341 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type YP_004398469.1 HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: lbr:LVIS_0978 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain YP_004398470.1 TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: lps:LPST_C1264 transcription antitermination protein NusB; PFAM: NusB/RsmB/TIM44 YP_004398471.1 PFAM: Alkaline shock protein Asp23; KEGG: lbr:LVIS_0980 hypothetical protein YP_004398472.1 SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: lbr:LVIS_0981 translation elongation factor P; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central YP_004398473.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: ppe:PEPE_0813 50S ribosomal protein L27; PFAM: Ribosomal protein L27 YP_004398474.1 PFAM: Protein of unknown function DUF464; KEGG: ppe:PEPE_0812 ribosomal protein YP_004398475.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: lrf:LAR_1124 50S ribosomal protein L21; PFAM: Ribosomal protein L21 YP_004398476.1 PFAM: 2-Deoxyuridine 5-triphosphate nucleotidohydrolase; KEGG: lps:LPST_C1253 hypothetical protein YP_004398477.1 KEGG: lbr:LVIS_0988 hypothetical protein YP_004398478.1 KEGG: lbr:LVIS_0989 hypothetical protein YP_004398479.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lpl:lp_1261 oligopeptide ABC transporter, substrate binding protein YP_004398480.1 KEGG: lbr:LVIS_0990 glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp YP_004398481.1 KEGG: lps:LPST_C1249 transcriptional regulator GlnR; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004398482.1 PFAM: tRNA isopentenyltransferase; Isopentenyl transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: lbr:LVIS_0992 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase YP_004398483.1 PFAM: Glycerophosphoryl diester phosphodiesterase; KEGG: lbr:LVIS_0993 glycerophosphoryl diester phosphodiesterase YP_004398484.1 KEGG: lps:LPST_C1246 hypothetical protein YP_004398485.1 KEGG: lrf:LAR_1138 hypothetical protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004398486.1 TIGRFAM: Glucokinase ROK; KEGG: lbr:LVIS_0996 transcriptional regulator/sugar kinase; PFAM: ROK YP_004398487.1 PFAM: Protein of unknown function DUF910; KEGG: lbr:LVIS_0997 hypothetical protein YP_004398488.1 PFAM: Peptidase S54, rhomboid domain; KEGG: lbr:LVIS_0998 membrane-associated serine protease YP_004398489.1 KEGG: lrf:LAR_1142 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase YP_004398490.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: lsa:LSA1333 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004398491.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: lbr:LVIS_1001 cell division protein FtsI/penicillin-binding protein 2 YP_004398492.1 PFAM: Uncharacterised protein family YfhO; KEGG: lpl:lp_1567 integral membrane protein YP_004398493.1 PFAM: FeS cluster biogenesis; KEGG: lbr:LVIS_1004 hypothetical protein YP_004398494.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398495.1 TIGRFAM: Transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: lps:LPST_C1233 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal YP_004398496.1 TIGRFAM: Uridine kinase; HAMAP: Uridine kinase; KEGG: lbr:LVIS_1007 uridine kinase; PFAM: Phosphoribulokinase/uridine kinase YP_004398497.1 KEGG: lbr:LVIS_1008 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755 YP_004398498.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: lbr:LVIS_1009 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial YP_004398499.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain 1, bacterial; KEGG: lbr:LVIS_1010 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal YP_004398500.1 PFAM: Helix-turn-helix, HxlR type; KEGG: lbr:LVIS_1011 transcriptional regulator YP_004398501.1 PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: lrf:LAR_1153 hypothetical protein YP_004398502.1 KEGG: lki:LKI_05745 rRNA methylase; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004398503.1 KEGG: oih:OB3253 acylphosphatase; HAMAP: Acylphosphatase; PFAM: Acylphosphatase-like YP_004398504.1 KEGG: lbr:LVIS_1015 preprotein translocase subunit YidC; TIGRFAM: Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004398505.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: lps:LPST_C0708 Na(+)/H(+) antiporter YP_004398506.1 PFAM: CsbD-like; KEGG: lsl:pSF118-20_17 hypothetical protein YP_004398507.1 PFAM: Integrase, catalytic core; KEGG: lps:LPST_P0025 ISLpl1 transposase YP_004398508.1 KEGG: lps:LPST_C2928 ATP-dependent Clp protease, ATP-binding subunit ClpL; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004398509.1 KEGG: lps:LPST_P0025 ISLpl1 transposase; manually curated; PFAM: Integrase, catalytic core YP_004398510.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: lcb:LCABL_21420 magnesium transporter (magnesium transporter CorA) YP_004398511.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004398512.1 KEGG: lpl:lp_1545 histidine protein kinase; sensor protein; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain YP_004398513.1 KEGG: lbr:LVIS_1018 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004398514.1 KEGG: lbr:LVIS_1019 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase YP_004398515.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004398516.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: lrl:LC705_01381 50S ribosomal protein L32; PFAM: Ribosomal protein L32p YP_004398517.1 PFAM: Protein of unknown function DUF177; KEGG: lbr:LVIS_1024 metal-binding protein YP_004398518.1 KEGG: lbr:LVIS_1025 hypothetical protein; HAMAP: Uncharacterised protein family UPF0348; PFAM: Uncharacterised protein family UPF0348 YP_004398519.1 PFAM: Methyltransferase type 12; KEGG: lpj:JDM1_1286 methyltransferase (putative) YP_004398520.1 KEGG: lbr:LVIS_1027 iojap family protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like YP_004398521.1 TIGRFAM: Conserved hypothetical protein CHP00488; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: lbr:LVIS_1028 HD superfamily NAD metabolism hydrolase; SMART: Metal-dependent phosphohydrolase, HD domain YP_004398522.1 PFAM: Cytidylyltransferase; TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: Probable nicotinate-nucleotide adenylyltransferase; KEGG: lbr:LVIS_1029 nicotinic acid mononucleotide adenylyltransferase YP_004398523.1 KEGG: lfe:LAF_1306 hypothetical protein; TIGRFAM: RNA-binding, CRM domain, prokaryote; PFAM: RNA-binding, CRM domain YP_004398524.1 TIGRFAM: GTP-binding protein, riobosome biogenesis, YqeH; KEGG: lbr:LVIS_1031 GTP-binding protein YqeH; PFAM: GTP-binding protein, HSR1-related YP_004398525.1 KEGG: lrf:LAR_1172 hydrolase; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIA; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase YP_004398526.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: lrf:LAR_1173 50S ribosomal protein L20; PFAM: Ribosomal protein L20 YP_004398527.1 TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: lrf:LAR_1174 50S ribosomal protein L35; PFAM: Ribosomal protein L35 YP_004398528.1 PFAM: Translation initiation factor 3, N-terminal; Translation initiation factor 3, C-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: efa:EF0914 translation initiation factor IF-3; HAMAP: Translation initiation factor 3 YP_004398529.1 TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: lbr:LVIS_1036 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD YP_004398530.1 PFAM: Primosomal DnaI, N-terminal; KEGG: lbr:LVIS_1037 primosomal protein DnaI YP_004398531.1 PFAM: Replication protein, DnaD/DnaB domain; KEGG: lpl:lp_1512 replication initiation and membrane attachment protein DnaB YP_004398532.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Ribonucleotide reductase regulator NrdR-like; KEGG: lps:LPST_C1191 transcriptional regulator NrdR; PFAM: ATP-cone YP_004398533.1 PFAM: Dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; KEGG: bwe:BcerKBAB4_4414 dephospho-CoA kinase YP_004398534.1 KEGG: lbr:LVIS_1041 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; SMART: DNA glycosylase/AP lyase, catalytic domain YP_004398535.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; KEGG: lps:LPST_C1188 DNA-directed DNA polymerase I; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA-directed DNA polymerase, family A, palm domain YP_004398536.1 PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: lrf:LAR_1183 hypothetical protein YP_004398537.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: lbr:LVIS_1047 UDP-N-acetylmuramate--L-alanine ligase YP_004398538.1 KEGG: lbr:LVIS_1048 DNA segregation ATPase FtsK/SpoIIIE related protein; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; ATPase, AAA+ type, core YP_004398539.1 PFAM: tRNA-binding domain; KEGG: lpj:JDM1_1220 hypothetical protein YP_004398540.1 PFAM: Thioredoxin domain; KEGG: lbr:LVIS_1050 thiol-disulfide isomerase and thioredoxin YP_004398542.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: lrf:LAR_1194 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase YP_004398543.1 PFAM: Bacterial ABC transporter EcsB; KEGG: lbr:LVIS_1480 ABC transporter permease YP_004398544.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_1481 ABC-type multidrug transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004398545.1 PFAM: Histidine triad (HIT) protein; KEGG: lrf:LAR_1197 histidine triad protein YP_004398547.1 KEGG: lbr:LVIS_1484 peptidylprolyl isomerase; HAMAP: Foldase protein PrsA; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; Protein of unknown function DUF903 YP_004398548.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398549.1 KEGG: lbr:LVIS_1485 HD-superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Metal-dependent phosphohydrolase, HD domain YP_004398550.1 KEGG: lrf:LAR_1200 hypothetical protein YP_004398551.1 PFAM: Metallo-dependent phosphatase; KEGG: lrf:LAR_1201 DNA repair exonuclease YP_004398552.1 KEGG: lps:LPST_C1134 hypothetical protein; HAMAP: Uncharacterised protein family UPF0342; PFAM: Uncharacterised protein family UPF0342 YP_004398553.1 TIGRFAM: Penicillin-binding protein 1A; KEGG: lbr:LVIS_1489 membrane carboxypeptidase (penicillin-binding protein); PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase YP_004398554.1 KEGG: lbr:LVIS_1491 arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic YP_004398555.1 KEGG: lbr:LVIS_1498 hypothetical protein YP_004398556.1 TIGRFAM: Aspartate racemase; KEGG: lsl:LSL_0018 aspartate racemase; PFAM: Asp/Glu/hydantoin racemase YP_004398557.1 KEGG: lsl:LSL_0017 hypothetical protein YP_004398558.1 PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: lrf:LAR_1813 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004398559.1 TIGRFAM: Asparagine synthase, glutamine-hydrolyzing; KEGG: lbr:LVIS_1501 asparagine synthase (glutamine-hydrolyzing); PFAM: Asparagine synthase; Glutamine amidotransferase, class-II YP_004398560.1 KEGG: lbr:LVIS_1504 hypothetical protein YP_004398561.1 PFAM: UspA; KEGG: lbr:LVIS_1888 UspA family nucleotide-binding protein YP_004398562.1 KEGG: cac:CA_C0625 periplasmic aspartyl protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004398563.1 KEGG: lrl:LC705_02547 integral membrane protein YP_004398564.1 KEGG: lbr:LVIS_1513 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004398565.1 KEGG: lga:LGAS_1856 beta-lactamase class A YP_004398566.1 PFAM: NLP/P60; KEGG: lbr:LVIS_1419 cell wall-associated hydrolase YP_004398567.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: bss:BSUW23_06650 L-Ala-D/L-Glu epimerase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004398568.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lpj:JDM1_1067 oligopeptide ABC transporter, substrate binding protein YP_004398569.1 KEGG: lca:LSEI_2001 hypothetical protein YP_004398570.1 PFAM: Peptidase S58, DmpA; KEGG: ooe:OEOE_0051 L-aminopeptidase/D-esterase YP_004398571.1 PFAM: Abortive infection protein; KEGG: lbr:LVIS_1514 metal-dependent membrane protease YP_004398572.1 KEGG: cac:CA_C0625 periplasmic aspartyl protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004398574.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: lps:LPST_C1074 large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel YP_004398575.1 KEGG: lpj:JDM1_0026 maltose phosphorylase; PFAM: Glycoside hydrolase, family 65, central catalytic; Glycoside hydrolase, family 65, N-terminal YP_004398576.1 TIGRFAM: Beta-phosphoglucomutase; Beta-phosphoglucomutase hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: lbr:LVIS_1518 HAD family sugar phosphatase; PFAM: Haloacid dehalogenase-like hydrolase YP_004398577.1 KEGG: lbr:LVIS_1519 HAD superfamily hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004398578.1 KEGG: lbr:LVIS_1520 deoxynucleoside kinase; PFAM: Deoxynucleoside kinase YP_004398579.1 PFAM: Protein of unknown function DUF1835; KEGG: lpj:JDM1_0085 hypothetical protein YP_004398581.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398582.1 PFAM: UspA; KEGG: lbr:LVIS_1054 UspA family nucleotide-binding protein YP_004398583.1 KEGG: lbr:LVIS_1055 dipeptidase PepV; TIGRFAM: Peptidase M20A, peptidase V-related; PFAM: Peptidase M20 YP_004398584.1 KEGG: lbr:LVIS_1056 sugar kinase; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Uncharacterised protein family, carbohydrate kinase-related YP_004398585.1 PFAM: Polysaccharide biosynthesis protein; KEGG: lbr:LVIS_1058 polysaccharide transporter YP_004398586.1 PFAM: Acyltransferase 3; KEGG: lrh:LGG_02230 acyltransferase 3 YP_004398587.1 PFAM: Protein of unknown function DUF915, hydrolase-like; KEGG: lrl:LC705_02217 alpha/beta hydrolase superfamily protein YP_004398588.1 KEGG: lbr:LVIS_2251 hypothetical protein YP_004398589.1 TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: lbr:LVIS_1062 leucyl-tRNA synthetase YP_004398590.1 KEGG: lsa:LSA1438 putative phosphoesterase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004398591.1 KEGG: ppe:PEPE_0642 major facilitator superfamily permease; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004398592.1 PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthetase; KEGG: lbr:LVIS_1523 S-adenosylmethionine synthetase YP_004398594.1 KEGG: lbr:LVIS_1525 hypothetical protein YP_004398595.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: lbr:LVIS_0312 Mg2+ and Co2+ transporter YP_004398596.1 PFAM: Amino acid permease domain; KEGG: lfe:LAF_0071 amino acid transport protein YP_004398597.1 PFAM: Isochorismatase-like; KEGG: lrh:LGG_02764 isochorismatase family protein YP_004398598.1 KEGG: lbr:LVIS_0722 hypothetical protein YP_004398600.1 PFAM: Alkaline shock protein Asp23; KEGG: ppe:PEPE_1667 hypothetical protein YP_004398601.1 PFAM: Alkaline shock protein Asp23; KEGG: lbr:LVIS_2012 hypothetical protein YP_004398603.1 KEGG: ppe:PEPE_1671 hypothetical protein YP_004398604.1 PFAM: Transglycosylase-associated protein; KEGG: ppe:PEPE_1672 hypothetical protein YP_004398605.1 PFAM: Domain of unknown function DUF218; KEGG: lrl:LC705_02565 hypothetical protein YP_004398606.1 KEGG: lbr:LVIS_0707 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004398607.1 PFAM: LicD-like; KEGG: lbr:LVIS_0705 LPS biosynthesis protein YP_004398608.1 KEGG: lbr:LVIS_1521 hypothetical protein YP_004398609.1 KEGG: lpl:lp_0827 hypothetical protein YP_004398610.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_0694 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004398611.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: lbr:LVIS_0690 muramidase (flagellum-specific); SMART: Lysozyme domain, subfamily 2 YP_004398612.1 KEGG: lbr:LVIS_0690 muramidase (flagellum-specific); PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme domain, subfamily 2 YP_004398613.1 PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: lbr:LVIS_0687 glucosamine--fructose-6-phosphate aminotransferase YP_004398614.1 TIGRFAM: Phosphoglucosamine mutase; KEGG: lbr:LVIS_0686 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal YP_004398615.1 PFAM: YbbR-like; KEGG: lbr:LVIS_0685 hypothetical protein YP_004398616.1 KEGG: lbr:LVIS_0684 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00159; PFAM: DNA integrity scanning protein, DisA, N-terminal YP_004398617.1 PFAM: Protein of unknown function DUF1361; KEGG: lbr:LVIS_0683 hypothetical protein YP_004398618.1 KEGG: llk:LLKF_2028 protein-tyrosine phosphatase YP_004398619.1 PFAM: Cation/H+ exchanger; KEGG: lbr:LVIS_0682 NhaP-type Na+/H+ and K+/H+ antiporter YP_004398620.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: ppe:PEPE_0474 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004398621.1 KEGG: lfe:LAF_0377 DNA-directed DNA polymerase III epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease YP_004398622.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lps:LPST_C0632 acetyltransferase (putative) YP_004398623.1 KEGG: lbr:LVIS_0675 ATPase or kinase; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria YP_004398624.1 TIGRFAM: Phosphate acetyltransferase; KEGG: lbr:LVIS_0674 phosphotransacetylase; PFAM: Phosphate acetyl/butaryl transferase YP_004398625.1 TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: lsl:LSL_1152 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like YP_004398626.1 KEGG: lbr:LVIS_0672 hypothetical protein YP_004398627.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: lbr:LVIS_0670 SsrA-binding protein; PFAM: SsrA-binding protein YP_004398628.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; KEGG: lbr:LVIS_0669 exoribonuclease R; SMART: Ribonuclease II/R; RNA-binding domain, S1 YP_004398629.1 KEGG: lbr:LVIS_0668 esterase/lipase YP_004398630.1 KEGG: lpj:JDM1_0659 preprotein translocase subunit SecG; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit YP_004398631.1 PFAM: Chloride channel, voltage gated; Regulator of K+ conductance, C-terminal; KEGG: lps:LPST_C0619 chloride channel protein YP_004398632.1 TIGRFAM: LPXTG-motif cell wall anchor; PFAM: Gram-positive anchor YP_004398633.1 KEGG: tps:THAPSDRAFT_23894 hypothetical protein YP_004398634.1 PFAM: Enolase, C-terminal; Enolase, N-terminal; TIGRFAM: Enolase; HAMAP: Enolase; KEGG: lbr:LVIS_0664 phosphopyruvate hydratase YP_004398635.1 TIGRFAM: Triosephosphate isomerase; KEGG: lbr:LVIS_0663 triosephosphate isomerase; PFAM: Triosephosphate isomerase YP_004398636.1 HAMAP: Phosphoglycerate kinase; KEGG: lrf:LAR_0382 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase YP_004398637.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: lbr:LVIS_0661 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004398638.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dsy:DSY1738 hypothetical protein YP_004398639.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lca:LSEI_1692 lactoylglutathione lyase related lyase YP_004398640.1 HAMAP: Peptidase S14, ClpP; KEGG: lbr:LVIS_0654 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP YP_004398641.1 TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: lrf:LAR_1444 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004398642.1 TIGRFAM: Sporulation regulator WhiA; HAMAP: Sporulation regulator WhiA; KEGG: lbr:LVIS_0653 hypothetical protein; PFAM: Sporulation regulator WhiA, C-terminal; Sporulation regulator WhiA, N-terminal YP_004398643.1 KEGG: lbr:LVIS_0652 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0052; PFAM: LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 YP_004398644.1 HAMAP: ATPase, P-loop-containing; KEGG: lbr:LVIS_0651 hypothetical protein YP_004398645.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Excinuclease ABC, A subunit; KEGG: lbr:LVIS_0649 excinuclease ABC subunit A; HAMAP: Excinuclease ABC, A subunit; PFAM: ABC transporter-like YP_004398646.1 SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: lbr:LVIS_0648 excinuclease ABC subunit B; HAMAP: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein YP_004398647.1 KEGG: lbr:LVIS_0646 HD superfamily hydrolase YP_004398648.1 TIGRFAM: Thioredoxin reductase; KEGG: lbr:LVIS_0645 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004398649.1 TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: lps:LPST_C0581 UTP--glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase YP_004398650.1 KEGG: lbr:LVIS_0643 glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal YP_004398651.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: lps:LPST_C0579 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase YP_004398652.1 TIGRFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; HAMAP: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase; KEGG: lbr:LVIS_0641 HPr kinase/phosphorylase; PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal YP_004398653.1 PFAM: Membrane protein of unknown function; KEGG: lfe:LAF_0336 hypothetical protein YP_004398654.1 PFAM: Phage shock domain; KEGG: lbr:LVIS_0639 putative stress-responsive transcriptional regulator YP_004398655.1 KEGG: lbr:LVIS_0638 phosphate uptake regulator; TIGRFAM: PhoU; PFAM: PhoU YP_004398656.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: lcb:LCABL_10540 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004398657.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: lci:LCK_01257 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004398658.1 KEGG: lbr:LVIS_0635 ABC-type phosphate transport system, permease component; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004398659.1 KEGG: lps:LPST_C0571 phosphate ABC transporter, permease protein; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004398660.1 TIGRFAM: Phosphate binding protein; KEGG: lpj:JDM1_0615 phosphate ABC transporter, substrate binding protein YP_004398661.1 manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; KEGG: lbr:LVIS_0632 signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS YP_004398662.1 KEGG: lps:LPST_C0568 response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004398663.1 KEGG: lbr:LVIS_0630 trypsin-like serine protease; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF YP_004398664.1 SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 2; HAMAP: Peptide chain release factor 2, bacterial; KEGG: lps:LPST_C0566 peptide chain release factor 2; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor YP_004398665.1 SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: lbr:LVIS_0627 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; Helicase, C-terminal; SecA Wing/Scaffold YP_004398666.1 KEGG: lps:LPST_C0564 ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein YP_004398667.1 PFAM: Phosphoribosyltransferase; KEGG: lci:LCK_01530 amidophosphoribosyltransferase YP_004398668.1 KEGG: lpj:JDM1_0606 ATP-dependent DNA helicase/translocase (putative); PFAM: Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398669.1 KEGG: lbr:LVIS_0623 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0029, Impact; PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal YP_004398670.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398671.1 PFAM: Glycosyl transferase, family 4; KEGG: lbr:LVIS_0622 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_004398672.1 PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: lbr:LVIS_0621 putative effector of murein hydrolase LrgA YP_004398673.1 PFAM: LrgB-like protein; KEGG: lbr:LVIS_0620 putative effector of murein hydrolase YP_004398674.1 PFAM: Amino acid permease domain; KEGG: lbr:LVIS_0619 amino acid transporter YP_004398675.1 TIGRFAM: Chaperonin Cpn60; HAMAP: Chaperonin Cpn60; KEGG: lbr:LVIS_0618 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1 YP_004398676.1 HAMAP: Chaperonin Cpn10; PFAM: Chaperonin Cpn10; KEGG: lbr:LVIS_0617 co-chaperonin GroES; SMART: Chaperonin Cpn10 YP_004398677.1 HAMAP: Transcriptional repressor, redox-sensing, Rex; PFAM: CoA-binding; Rex DNA-binding, C-terminal; KEGG: lbr:LVIS_0616 redox-sensing transcriptional repressor REX; SMART: CoA-binding YP_004398678.1 KEGG: lbr:LVIS_0615 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004398679.1 manually curated; KEGG: lfe:LAF_1723 hypothetical protein YP_004398680.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398681.1 PFAM: Peptidase M22, glycoprotease; TIGRFAM: Peptidase M22, O-sialoglycoprotein peptidase; Peptidase M22, glycoprotease, subgroup; HAMAP: Peptidase M22, O-sialoglycoprotein peptidase; KEGG: lbr:LVIS_0612 putative DNA-binding/iron metalloprotein/AP endonuclease YP_004398682.1 KEGG: lbr:LVIS_0611 acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain YP_004398683.1 KEGG: lbr:LVIS_0610 metal-dependent protease-like protein, putative molecular chaperone; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease YP_004398684.1 PFAM: Acyl-ACP thioesterase; KEGG: lbr:LVIS_0609 acyl-ACP thioesterase YP_004398685.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: lsl:LSL_1221 tetrapyrrole (corrin/porphyrin) methylase family protein; PFAM: Tetrapyrrole methylase YP_004398686.1 KEGG: lps:LPST_C0537 hypothetical protein; HAMAP: Initiation-control protein yabA; PFAM: Protein of unknown function DUF972 YP_004398687.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: lbr:LVIS_0606 DNA polymerase III subunit delta' YP_004398688.1 PFAM: Protein of unknown function DUF970; KEGG: lbr:LVIS_0605 hypothetical protein YP_004398689.1 PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: lbr:LVIS_0604 thymidylate kinase YP_004398690.1 PFAM: Protein of unknown function DUF2508; KEGG: lbr:LVIS_0603 hypothetical protein YP_004398691.1 SMART: Toprim domain; TIGRFAM: RecR protein; KEGG: lcz:LCAZH_2232 recombinational DNA repair protein; HAMAP: RecR protein; PFAM: Toprim domain; Zinc finger C4-type, RecR YP_004398692.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: ppe:PEPE_1483 hypothetical protein; PFAM: Uncharacterised protein family UPF0133 YP_004398693.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: lbr:LVIS_0600 DNA polymerase III, gamma/tau subunit; SMART: ATPase, AAA+ type, core YP_004398694.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ppe:PEPE_1485 tRNA-adenosine deaminase YP_004398695.1 PFAM: Methyltransferase small; KEGG: lbr:LVIS_0598 16S RNA G1207 methylase RsmC YP_004398696.1 KEGG: lbr:LVIS_0597 glutaredoxin-like protein; TIGRFAM: Glutaredoxin-like protein NrdH; PFAM: Glutaredoxin YP_004398697.1 KEGG: lps:LPST_C0527 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase N-terminal; Ribonucleotide reductase large subunit, N-terminal YP_004398698.1 KEGG: lbr:LVIS_0595 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase YP_004398699.1 KEGG: lrl:LC705_00155 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004398700.1 PFAM: Galactose-1-phosphate uridyl transferase, C-terminal; Galactose-1-phosphate uridyl transferase, N-terminal; TIGRFAM: Galactose-1-phosphate uridyl transferase, class II; HAMAP: Galactose-1-phosphate uridylyltransferase; KEGG: ooe:OEOE_0303 galactose-1-phosphate uridylyltransferase YP_004398701.1 TIGRFAM: UDP-glucose 4-epimerase; KEGG: lpj:JDM1_2773 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase YP_004398702.1 PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: Galactokinase; HAMAP: Galactokinase, bacterial; KEGG: ooe:OEOE_0304 galactokinase YP_004398703.1 KEGG: lbr:LVIS_0592 lysyl-tRNA synthetase (class II) YP_004398704.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398707.1 KEGG: lrl:LC705_00476 lyzozyme M1; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup YP_004398709.1 KEGG: llm:llmg_2084 hypothetical protein YP_004398711.1 KEGG: lbr:LVIS_1080 hypothetical protein YP_004398712.1 KEGG: lbr:LVIS_1081 hypothetical protein YP_004398713.1 KEGG: lam:LA2_05850 hypothetical protein YP_004398714.1 KEGG: lam:LA2_05845 hypothetical protein YP_004398716.1 KEGG: lam:LA2_05835 hypothetical protein YP_004398717.1 KEGG: lin:lin1714 hypothetical protein YP_004398718.1 KEGG: lam:LA2_05825 muramidase (flagellum-specific) YP_004398719.1 KEGG: lbr:LVIS_1088 SLT domain-containing protein; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region; Peptidase M23 YP_004398721.1 KEGG: efa:EF1471 hypothetical protein YP_004398722.1 KEGG: efa:EF1470 hypothetical protein YP_004398723.1 KEGG: lam:LA2_05800 hypothetical protein YP_004398726.1 KEGG: efa:EF1466 hypothetical protein YP_004398727.1 KEGG: lam:LA2_05780 hypothetical protein YP_004398729.1 PFAM: Protein of unknown function DUF2184; KEGG: efa:EF1463 hypothetical protein YP_004398730.1 KEGG: lam:LA2_05770 hypothetical protein YP_004398731.1 PFAM: Protein of unknown function DUF2213; KEGG: efa:EF1461 hypothetical protein YP_004398732.1 KEGG: cbh:CLC_0572 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup YP_004398733.1 KEGG: lam:LA2_05745 minor head protein; TIGRFAM: Phage putative head morphogenesis protein, SPP1 gp7; PFAM: Phage putative head morphogenesis protein, SPP1 gp7 YP_004398734.1 TIGRFAM: Phage-related protein HI1409; KEGG: efa:EF1456 hypothetical protein YP_004398735.1 TIGRFAM: Methanobacterium phage psiM2, terminase large subunit; KEGG: efa:EF1455 terminase, large subunit, putative YP_004398736.1 KEGG: bha:BH3534 hypothetical protein YP_004398740.1 KEGG: lbr:LVIS_1108 hypothetical protein YP_004398742.1 KEGG: lre:Lreu_1125 hypothetical protein YP_004398745.1 KEGG: lps:LPST_C2027 prophage Lp1 protein 22 YP_004398747.1 KEGG: lpl:lp_0653 prophage Lp1 protein 30; TIGRFAM: Conserved hypothetical protein CHP01671; PFAM: YopX protein YP_004398748.1 KEGG: spm:spyM18_1281 hypothetical protein YP_004398752.1 PFAM: Protein of unknown function DUF1064; KEGG: cbi:CLJ_B2556 hypothetical protein YP_004398753.1 PFAM: Lactococcus phage bIL285 ORF6, C-terminal; AntA/AntB antirepressor; KEGG: llm:llmg_0797 hypothetical protein YP_004398756.1 KEGG: efa:EF2838 DNA replication protein DnaC, putative YP_004398759.1 TIGRFAM: Replication protein, DnaD/DnaB domain; KEGG: lca:LSEI_1955 hypothetical protein YP_004398760.1 manually curated; KEGG: lrl:LC705_00850 hypothetical protein YP_004398761.1 KEGG: lpl:lp_0641 prophage Lp1 protein 18; TIGRFAM: DNA single-strand annealing protein RecT; PFAM: DNA single-strand annealing protein RecT-like YP_004398766.1 PFAM: Helix-turn-helix type 3 YP_004398768.1 KEGG: lrf:LAR_0771 putative phage repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004398769.1 KEGG: lpl:lp_2448 prophage Lp2 protein 9; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004398770.1 PFAM: Protein of unknown function DUF955; KEGG: lpl:lp_0630 prophage Lp1 protein 7 YP_004398776.1 PFAM: Integrase, catalytic core, phage; KEGG: lpl:lp_0624 prophage Lp1 protein 1, integrase YP_004398777.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: lps:LPST_C0521 ribosomal protein L12/L7; PFAM: Ribosomal protein L7/L12, C-terminal YP_004398778.1 KEGG: lps:LPST_C0520 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0 YP_004398779.1 KEGG: lfe:LAF_0269 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1 YP_004398780.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal domain; Ribosomal protein L11, N-terminal domain; KEGG: lbr:LVIS_0588 50S ribosomal protein L11; SMART: Ribosomal protein L11 YP_004398781.1 PFAM: Protein of unknown function DUF915, hydrolase-like; KEGG: lpj:JDM1_0555 cell surface hydrolase, membrane-bound (putative) YP_004398782.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: lbr:LVIS_0587 transcription antiterminator; SMART: Transcription antitermination protein, NusG, N-terminal; KOW YP_004398783.1 KEGG: lbr:LVIS_0586 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein YP_004398784.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: lps:LPST_C0514 50S ribosomal protein L33; PFAM: Ribosomal protein L33 YP_004398785.1 KEGG: lps:LPST_C0513 DNA-directed RNA polymerase, sigma factor 30; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2 YP_004398786.1 PFAM: Protein of unknown function DUF901; KEGG: lps:LPST_C0512 hypothetical protein YP_004398787.1 TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: lps:LPST_C0511 tRNA/rRNA methyltransferase; SMART: RNA 2-O ribose methyltransferase, substrate binding YP_004398788.1 PFAM: Ribonuclease III; KEGG: lrf:LAR_0292 hypothetical protein YP_004398789.1 SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: lbr:LVIS_0580 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR YP_004398790.1 PFAM: Integrase, catalytic core; KEGG: lrh:LGG_00445 transposase IS30 family protein YP_004398791.1 TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: lbr:LVIS_0579 glutamyl- and glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain YP_004398792.1 KEGG: lps:LPST_C0507 PilT family ATPase; PFAM: PilT protein, N-terminal; SMART: Nucleotide binding protein, PINc YP_004398793.1 KEGG: lbr:LVIS_0577 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core YP_004398794.1 PFAM: DeoxyUTP pyrophosphatase domain; KEGG: ppe:PEPE_1504 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_004398795.1 PFAM: Ribose 5-phosphate isomerase, type A; HTH transcriptional regulator, DeoR; TIGRFAM: Ribose 5-phosphate isomerase, type A; HAMAP: Ribose-5-phosphate isomerase, type A, subgroup; KEGG: ppe:PEPE_1506 ribose-5-phosphate isomerase A YP_004398796.1 KEGG: lbr:LVIS_0572 aminopeptidase C; PFAM: Peptidase C1B, bleomycin hydrolase YP_004398797.1 KEGG: lrf:LAR_0279 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; HAMAP: Phosphoglycerate mutase 1; SMART: Histidine phosphatase superfamily, clade-1 YP_004398798.1 PFAM: Auxin efflux carrier; KEGG: lbr:LVIS_0568 AEC family permease YP_004398799.1 KEGG: lbr:LVIS_0567 transcriptional regulator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator YP_004398800.1 PFAM: Phosphotransferase system, mannose/fructose/sorbose family IID component; KEGG: lbr:LVIS_0558 mannose-specific PTS system component IID YP_004398801.1 PFAM: Phosphotransferase system, sorbose-specific IIC subunit; KEGG: lbr:LVIS_0557 mannose-specific PTS system component IIC YP_004398802.1 KEGG: ppe:PEPE_1513 phosphotransferase system, mannose/fructose-specific component IIB; PFAM: Phosphotransferase system, sorbose subfamily IIB component YP_004398803.1 KEGG: lps:LPST_C0489 mannose PTS, EIIA; TIGRFAM: Phosphotransferase system, fructose subfamily IIA component, subgroup; PFAM: Phosphotransferase system, fructose subfamily IIA component YP_004398804.1 KEGG: lbr:LVIS_0555 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase YP_004398805.1 KEGG: lbr:LVIS_0548 homoserine kinase; TIGRFAM: Homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004398806.1 SMART: Protein of unknown function SprT; KEGG: lpj:JDM1_0467 hypothetical protein YP_004398807.1 KEGG: lbr:LVIS_0546 transcriptional accessory protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1 YP_004398808.1 KEGG: lbr:LVIS_0545 hypothetical protein YP_004398809.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, calcium-transporting, PMCA-type; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lpj:JDM1_0464 cation transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004398810.1 TIGRFAM: NAD synthase; HAMAP: NH(3)-dependent NAD(+) synthetase; KEGG: lbr:LVIS_0544 NAD synthetase; PFAM: NAD/GMP synthase YP_004398811.1 TIGRFAM: Nicotinate phosphoribosyltransferase putative; KEGG: ppe:PEPE_1525 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_004398812.1 TIGRFAM: Glycosyl transferase WecB/TagA/CpsF; KEGG: lpj:JDM1_0461 teichoic acid biosynthesis protein A; PFAM: Glycosyl transferase WecB/TagA/CpsF YP_004398814.1 KEGG: lbr:LVIS_0540 transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004398815.1 TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: lbr:LVIS_0538 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_004398816.1 KEGG: lbr:LVIS_0534 dipeptide/tripeptide permease; TIGRFAM: Amino acid/peptide transporter; PFAM: Oligopeptide transporter YP_004398818.1 KEGG: bld:BLi02506 hypothetical protein YP_004398819.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398820.1 KEGG: lps:LPST_C1665 hypothetical protein YP_004398821.1 KEGG: lrh:LGG_00486 lyzozyme M1; PFAM: Glycoside hydrolase, family 25; SMART: Glycoside hydrolase, family 25 subgroup YP_004398823.1 PFAM: Phage uncharacterised protein XkdX YP_004398825.1 KEGG: lbr:LVIS_1080 hypothetical protein YP_004398827.1 KEGG: lmy:LM5923_1320 hypothetical protein YP_004398828.1 TIGRFAM: Phage minor structural protein, N-terminal; KEGG: lps:LPST_C1670 phage minor structural protein YP_004398829.1 KEGG: lki:LKI_01745 prophage pi3 protein 14; TIGRFAM: Phage tail tape measure protein TP901, core region; PFAM: Phage tail tape measure protein TP901, core region; NLP/P60 YP_004398830.1 KEGG: lci:LCK_01048 molecular chaperone YP_004398831.1 KEGG: lsl:LSL_0290 phage major tail protein YP_004398832.1 PFAM: Protein of unknown function DUF806; KEGG: lpj:JDM1_0992 hypothetical protein YP_004398833.1 KEGG: lki:LKI_01770 prophage pi3 protein 19; TIGRFAM: Phage protein, HK97, gp10; PFAM: Protein of unknown function DUF646, phage head/tail component YP_004398834.1 KEGG: ppe:PEPE_0999 hypothetical protein; TIGRFAM: Phage head-tail joining protein; PFAM: Phage head-tail joining protein YP_004398835.1 PFAM: Bacteriophage QLRG family, putative DNA packaging; KEGG: lki:LKI_03965 prophage pi1 protein 38 YP_004398836.1 TIGRFAM: Bacteriophage HK97, major capsid protein; KEGG: bao:BAMF_0849 phage major capsid protein YP_004398837.1 PFAM: Peptidase S14, ClpP; KEGG: lrf:LAR_1060 phage Clp-protease YP_004398838.1 KEGG: lfe:LAF_0472 phage portal protein; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein YP_004398840.1 PFAM: Phage Terminase; KEGG: lpj:JDM1_0985 prophage Lp3 protein 15, terminase large subunit YP_004398841.1 TIGRFAM: Phage terminase, small subunit, putative, P27; KEGG: lki:LKI_03935 hypothetical protein YP_004398842.1 KEGG: lki:LKI_03930 prophage pi1 protein 32 YP_004398843.1 KEGG: lrh:LGG_01542 hypothetical protein YP_004398846.1 KEGG: lpj:JDM1_0491 hypothetical protein YP_004398848.1 KEGG: ccv:CCV52592_0062 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP01671; PFAM: YopX protein YP_004398850.1 KEGG: lcb:LCABL_11000 Orf106 gp; manually curated; PFAM: VRR-NUC YP_004398851.1 TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; DNA primase/nucleoside triphosphatase, C-terminal; KEGG: lfe:LAF_0466 phage primase; SMART: Phage/plasmid primase, P4, C-terminal YP_004398852.1 PFAM: Protein of unknown function DUF669; KEGG: lfe:LAF_0465 hypothetical protein YP_004398853.1 KEGG: lfe:LAF_0464 phage helicase; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; Uncharacterised protein family UPF0547; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398854.1 PFAM: Pathogenesis-related transcriptional factor/ERF, DNA-binding; KEGG: cdl:CDR20291_1443 hypothetical protein YP_004398855.1 TIGRFAM: Phage nucleotide-binding protein; KEGG: spk:MGAS9429_Spy0547 phage protein YP_004398856.1 PFAM: Protein of unknown function DUF1351; KEGG: lpj:JDM1_0973 hypothetical protein YP_004398862.1 PFAM: Protein of unknown function DUF771; KEGG: bss:BSUW23_09745 hypothetical protein YP_004398867.1 KEGG: efa:EF2467 hypothetical protein YP_004398868.1 KEGG: sao:SAOUHSC_02084 phage repressor protein; PFAM: Helix-turn-helix type 3; Peptidase S24/S26A/S26B, conserved region; SMART: Helix-turn-helix type 3 YP_004398869.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004398870.1 PFAM: Integrase, catalytic core, phage; KEGG: lfe:LAF_0460 integrase YP_004398871.1 PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase, class II; KEGG: lps:LPST_C0458 lysyl-tRNA synthetase YP_004398872.1 KEGG: ppe:PEPE_1543 tRNA-dihydrouridine synthase; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase YP_004398873.1 KEGG: lps:LPST_C0456 heat shock protein HSP33; HAMAP: Heat shock protein Hsp33 protein; PFAM: Heat shock protein Hsp33 protein YP_004398874.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: lbr:LVIS_0523 ATP-dependent Zn protease; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular YP_004398875.1 TIGRFAM: Hypoxanthine phosphoribosyl transferase; KEGG: lbr:LVIS_0522 hypoxanthine-guanine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase YP_004398876.1 SMART: Lysidine-tRNA(Ile) synthetase, C-terminal; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; KEGG: lrf:LAR_0255 cell cycle protein; HAMAP: Lysidine-tRNA(Ile) synthetase; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase YP_004398877.1 KEGG: lbr:LVIS_0520 hypothetical protein; PFAM: Ribosomal protein S1, RNA-binding domain; SMART: RNA-binding domain, S1 YP_004398878.1 PFAM: Septum formation initiator; KEGG: ppe:PEPE_1549 septum formation initiator YP_004398879.1 KEGG: lbr:LVIS_0518 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein; PFAM: RNA-binding S4; SMART: RNA-binding S4 YP_004398880.1 PFAM: Polysaccharide biosynthesis protein; KEGG: lps:LPST_C0449 integral membrane protein YP_004398881.1 TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: lbr:LVIS_0516 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398882.1 PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: lbr:LVIS_0515 peptidyl-tRNA hydrolase YP_004398883.1 PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; TIGRFAM: L-lactate dehydrogenase; HAMAP: L-lactate dehydrogenase; KEGG: lrf:LAR_0688 L-lactate dehydrogenase YP_004398884.1 PFAM: Cystathionine beta-synthase, core; KEGG: lbr:LVIS_0511 CBS domain-containing protein YP_004398885.1 PFAM: PemK-like protein; KEGG: lbr:LVIS_0510 toxin-antitoxin addiction module toxin component MazF (an endoRNAse) YP_004398887.1 PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: lps:LPST_C0426 alanine racemase YP_004398888.1 TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; HAMAP: Holo-[acyl carrier protein] synthase; KEGG: lcz:LCAZH_2524 phosphopantetheinyl transferase; PFAM: 4'-phosphopantetheinyl transferase YP_004398889.1 KEGG: lbr:LVIS_0505 superfamily II DNA/RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398890.1 TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: lpj:JDM1_0420 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal YP_004398891.1 KEGG: lbr:LVIS_0502 hypothetical protein YP_004398892.1 KEGG: lrf:LAR_0231 phosphotyrosine protein phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight YP_004398893.1 KEGG: lbr:LVIS_0496 sortase (surface protein transpeptidase); TIGRFAM: Peptidase C60, sortase A/B; PFAM: Peptidase C60, sortase A/B YP_004398894.1 PFAM: Major facilitator superfamily MFS-1; KEGG: efa:EF2068 multidrug resistance protein, putative YP_004398895.1 TIGRFAM: Ribosomal protein L31; HAMAP: Ribosomal protein L31; KEGG: lbr:LVIS_0495 ribosomal protein L31; PFAM: Ribosomal protein L31 YP_004398896.1 PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: lbr:LVIS_0494 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004398897.1 TIGRFAM: Hydrophobe/amphiphile efflux-3 HAE3; KEGG: bca:BCE_4897 hypothetical protein YP_004398898.1 PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: lbr:LVIS_0487 CTP synthetase YP_004398899.1 KEGG: lps:LPST_C0405 DNA-directed RNA polymerase subunit delta; HAMAP: DNA-directed RNA polymerase delta subunit; PFAM: DNA-directed RNA polymerase delta subunit YP_004398900.1 PFAM: Protein of unknown function DUF1934; KEGG: ppe:PEPE_1573 hypothetical protein YP_004398901.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: lbr:LVIS_0483 lipoate-protein ligase A YP_004398902.1 KEGG: lbr:LVIS_0482 HD superfamily phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain YP_004398903.1 KEGG: lbr:LVIS_0481 HAD superfamily hydrolase; TIGRFAM: Cof protein; HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004398904.1 KEGG: lbr:LVIS_0477 hypothetical protein YP_004398905.1 TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: lbr:LVIS_0476 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase YP_004398906.1 PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: lbr:LVIS_0475 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_004398907.1 KEGG: lbr:LVIS_0474 pur operon repressor; TIGRFAM: Pur operon repressor; PFAM: Bacterial purine repressor, N-terminal; Phosphoribosyltransferase YP_004398908.1 PFAM: ABC-3; KEGG: lbr:LVIS_0472 ABC-type Mn2+/Zn2+ transport system, permease component YP_004398909.1 KEGG: lbr:LVIS_0471 ABC-type Mn/Zn transport system, ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004398910.1 PFAM: GHMP kinase; GHMP kinase, C-terminal; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: lbr:LVIS_0460 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004398911.1 PFAM: Protein of unknown function DUF1021; KEGG: lbr:LVIS_0459 hypothetical protein YP_004398912.1 KEGG: lbr:LVIS_0458 dimethyladenosine transferase; PFAM: Ribosomal RNA adenine methylase transferase; TIGRFAM: Ribosomal RNA adenine dimethylase; HAMAP: Ribosomal RNA adenine dimethylase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal YP_004398913.1 TIGRFAM: Primase-related protein; PFAM: Toprim domain; KEGG: lbr:LVIS_0457 ribonuclease M5; SMART: Toprim domain YP_004398914.1 KEGG: lps:LPST_C0382 DNAse (putative); TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related YP_004398915.1 PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase, class Ia; KEGG: lps:LPST_C0380 methionine--tRNA ligase YP_004398916.1 PFAM: Protein of unknown function DUF72; KEGG: lps:LPST_C0377 hypothetical protein YP_004398917.1 KEGG: lbr:LVIS_0452 NAD-dependent deacetylase; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2 YP_004398918.1 KEGG: lbr:LVIS_0451 hypothetical protein YP_004398919.1 KEGG: lbr:LVIS_0450 hydroxymethylglutaryl-CoA reductase; TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type YP_004398920.1 PFAM: Ppx/GppA phosphatase; KEGG: ppe:PEPE_0257 exopolyphosphatase YP_004398921.1 TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: ppe:PEPE_0256 tryptophanyl-tRNA synthetase II; PFAM: Aminoacyl-tRNA synthetase, class Ib YP_004398922.1 KEGG: lrh:LGG_01481 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_004398923.1 KEGG: lbr:LVIS_0447 superfamily I DNA/RNA helicase YP_004398924.1 KEGG: lps:LPST_C0311 glutathione reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004398925.1 KEGG: lbr:LVIS_1638 geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase YP_004398926.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; KEGG: lbr:LVIS_1639 cytochrome bd biosynthesis ABC-type transporter, ATPase and permease component; PFAM: ABC transporter-like YP_004398927.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; KEGG: lpl:lp_1128 cytochrome d ABC transporter, ATP-binding and permease protein; PFAM: ABC transporter-like; ABC transporter, transmembrane domain YP_004398928.1 KEGG: lbr:LVIS_1641 cytochrome bd-type quinol oxidase, subunit 2; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II YP_004398929.1 PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: lbr:LVIS_1642 cytochrome bd-type quinol oxidase, subunit 1 YP_004398930.1 KEGG: efa:EF3257 pyridine nucleotide-disulfide family oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_004398931.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_0701 ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004398932.1 PFAM: ABC transporter permease protein; KEGG: lbr:LVIS_0700 ABC-type Fe3+-siderophore transport system, permease component YP_004398933.1 KEGG: lbr:LVIS_0699 ABC-type Fe3+-hydroxamate transport system, periplasmic component; TIGRFAM: ABC transporter, haem-binding protein IsdE; PFAM: Periplasmic binding protein YP_004398934.1 KEGG: lbr:LVIS_0698 cell surface protein; PFAM: NEAr transporter; SMART: NEAr transporter YP_004398935.1 KEGG: lbr:LVIS_0697 cell surface protein; TIGRFAM: LPXTG-motif cell wall anchor; PFAM: NEAr transporter; Gram-positive anchor YP_004398936.1 PFAM: Sulfatase; KEGG: lbr:LVIS_1546 phosphoglycerol transferase/alkaline phosphatase superfamily protein YP_004398937.1 PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: lbr:LVIS_1548 integral membrane protein YP_004398938.1 PFAM: Glycosyl transferase, group 1; KEGG: lbr:LVIS_1549 glycosyltransferase YP_004398939.1 PFAM: Glycosyl transferase, group 1; KEGG: lbr:LVIS_1550 glycosyltransferase YP_004398940.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004398941.1 TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: lps:LPST_C1034 phosphoenolpyruvate--protein phosphatase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain YP_004398942.1 KEGG: ljf:FI9785_1387 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein YP_004398943.1 KEGG: lsl:LSL_0387 hypothetical protein YP_004398944.1 manually curated; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; KEGG: lps:LPST_C1031 ATP-dependent Clp protease ATP-binding subunit ClpC; SMART: ATPase, AAA+ type, core YP_004398945.1 KEGG: lbr:LVIS_1555 hypothetical protein YP_004398946.1 KEGG: lgs:LEGAS_0064 Cro/CI family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004398947.1 PFAM: Peptidase C69, dipeptidase A; KEGG: lbr:LVIS_1557 dipeptidase YP_004398948.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: lsl:LSL_0374 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2 YP_004398949.1 KEGG: lbr:LVIS_1563 glycosyl/glycerophosphate transferase; PFAM: CDP-glycerol glycerophosphotransferase YP_004398950.1 KEGG: lbr:LVIS_1564 hypothetical protein YP_004398951.1 TIGRFAM: Glycerol-3-phosphate cytidylyltransferase; Cytidyltransferase-related; KEGG: lbr:LVIS_1565 cytidylyltransferase; PFAM: Cytidylyltransferase YP_004398952.1 PFAM: Uncharacterised protein family UPF0118; KEGG: lbr:LVIS_1566 permease YP_004398953.1 PFAM: Domain of unknown function DUF402; KEGG: lps:LPST_C1005 hypothetical protein YP_004398954.1 KEGG: lpl:lp_1240 recombination regulator RecX; HAMAP: Regulatory protein RecX; PFAM: Regulatory protein RecX YP_004398955.1 PFAM: Flavodoxin/nitric oxide synthase; KEGG: lbr:LVIS_1571 flavodoxin YP_004398956.1 KEGG: lbr:LVIS_1572 ribonuclease BN-like family protein; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related YP_004398957.1 TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: lbr:LVIS_1574 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_004398958.1 PFAM: Glycosyl transferase, family 2; KEGG: lpl:lp_2071 glycosyltransferase YP_004398959.1 PFAM: GtrA-like protein; KEGG: lbr:LVIS_0822 GtcA family membrane protein YP_004398960.1 KEGG: lbr:LVIS_1428 ABC-type amino acid transport system, permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004398961.1 KEGG: lbr:LVIS_1427 ABC-type amino acid transport system, periplasmic component; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3 YP_004398962.1 KEGG: ppe:PEPE_0156 Na+/xyloside symporter related transporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004398963.1 KEGG: lbr:LVIS_1580 superfamily II DNA/RNA helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal YP_004398964.1 PFAM: Oxidoreductase, N-terminal; KEGG: lps:LPST_C0933 oxidoreductase (putative) YP_004398965.1 KEGG: lbr:LVIS_1582 hypothetical protein YP_004398966.1 PFAM: Glycoside hydrolase, family 25; KEGG: lbr:LVIS_1583 lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_004398967.1 PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: lbr:LVIS_1584 transcriptional regulator YP_004398968.1 TIGRFAM: Gluconate kinase; KEGG: lbr:LVIS_1585 gluconate kinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal YP_004398969.1 KEGG: lbr:LVIS_1586 H+/gluconate symporter related permease; TIGRFAM: Gluconate transporter; PFAM: Gluconate transporter YP_004398970.1 PFAM: BioY protein; KEGG: lhe:lhv_1920 hypothetical protein YP_004398971.1 KEGG: lhe:lhv_1921 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11; Biotin protein ligase, C-terminal YP_004398972.1 KEGG: lhe:lhv_1922 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004398973.1 KEGG: lhe:lhv_1923 acetyl-CoA carboxylase alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit YP_004398974.1 HAMAP: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: lhe:lhv_1924 acetyl-CoA carboxylase beta subunit; PFAM: Carboxyl transferase YP_004398975.1 PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; KEGG: lhe:lhv_1925 biotin carboxylase; SMART: Biotin carboxylase, C-terminal YP_004398976.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: lhe:lhv_1926 carrier protein YP_004398977.1 KEGG: lhe:lhv_1927 acetyl-CoA biotin carboxyl carrier; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment YP_004398978.1 SMART: Polyketide synthase, beta-ketoacyl synthase domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: lhe:lhv_1928 3-oxoacyl-(acyl-carrier-protein) synthase; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal YP_004398979.1 KEGG: lhe:lhv_1929 dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004398980.1 PFAM: Acyl transferase; KEGG: lhe:lhv_1930 hypothetical protein; SMART: Polyketide synthase, acyl transferase domain YP_004398981.1 KEGG: lhe:lhv_1931 acyl carrier; HAMAP: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding YP_004398982.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: lhe:lhv_1932 3-oxoacyl-(acyl carrier protein) synthase III YP_004398983.1 KEGG: lbr:LVIS_0936 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004398984.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; KEGG: lhe:lhv_1933 carrier protein; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ YP_004398985.1 SMART: Pyrimidine nucleoside phosphorylase, C-terminal; TIGRFAM: Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic; KEGG: lbr:LVIS_1591 thymidine phosphorylase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; Pyrimidine nucleoside phosphorylase, C-terminal YP_004398986.1 PFAM: Sugar-binding domain, putative; KEGG: lbr:LVIS_1592 citrate lyase regulator YP_004398987.1 PFAM: Nucleoside phosphorylase domain; TIGRFAM: Purine nucleoside phosphorylase; HAMAP: Purine nucleoside phosphorylase; KEGG: lbr:LVIS_1593 purine nucleoside phosphorylase YP_004398988.1 PFAM: Metalloenzyme; TIGRFAM: Phosphopentomutase; HAMAP: Phosphopentomutase; KEGG: lbr:LVIS_1594 phosphopentomutase YP_004398989.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Deoxyribose-phosphate aldolase; HAMAP: Deoxyribose-phosphate aldolase, type 1; KEGG: lbr:LVIS_1595 deoxyribose-phosphate aldolase YP_004398990.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: lsa:LSA1694 putative glycine/betaine/carnitine ABC transporter, substrate binding lipoprotein precursor YP_004398991.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lsa:LSA1695 putative glycine/betaine/carnitine ABC transporter, membrane-spanning subunit YP_004398992.1 SMART: ATPase, AAA+ type, core; Cystathionine beta-synthase, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: lsa:LSA1696 putative glycine/betaine/carnitine ABC transporter, ATP-binding subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core YP_004398993.1 KEGG: lbr:LVIS_1627 tRNA (uracil-5-)-methyltransferase related enzyme; TIGRFAM: 23S rRNA methyltransferase/RumA; PFAM: Deoxyribonuclease/rho motif-related TRAM; Methyltransferase type 11 YP_004398994.1 TIGRFAM: Diacylglycerol/lipid kinase; PFAM: Diacylglycerol kinase, catalytic domain; KEGG: lps:LPST_C0923 putative lipid kinase; SMART: Diacylglycerol kinase, catalytic domain YP_004398995.1 SMART: Asn/Gln amidotransferase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: lbr:LVIS_1629 aspartyl/glutamyl-tRNA amidotransferase subunit B; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase YP_004398996.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: lbr:LVIS_1630 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase YP_004398997.1 TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Glu-tRNAGln amidotransferase, C subunit; KEGG: lbr:LVIS_1631 aspartyl/glutamyl-tRNA amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase, C subunit YP_004398998.1 PFAM: CamS sex pheromone cAM373; KEGG: lbr:LVIS_1632 hypothetical protein YP_004398999.1 KEGG: lbr:LVIS_1633 NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; TIGRFAM: NAD-dependent DNA ligase; HAMAP: NAD-dependent DNA ligase; SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT YP_004399000.1 KEGG: lbr:LVIS_1634 superfamily I DNA/RNA helicase; TIGRFAM: DNA helicase, ATP-dependent, PcrA type; PFAM: DNA helicase, UvrD/REP type YP_004399001.1 KEGG: lbr:LVIS_1635 phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type YP_004399002.1 PFAM: Phosphoribosyltransferase; TIGRFAM: Xanthine phosphoribosyltransferase; HAMAP: Xanthine phosphoribosyltransferase; KEGG: lbr:LVIS_1636 adenine/guanine phosphoribosyltransferase-like protein YP_004399003.1 KEGG: lfe:LAF_1479 N-acetylmuramidase; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme domain, subfamily 2 YP_004399004.1 KEGG: lps:LPST_C0901 hypothetical protein YP_004399005.1 KEGG: lsl:LSL_1311 hypothetical protein YP_004399006.1 PFAM: Ribosomal protein S9; KEGG: lbr:LVIS_1657 30S ribosomal protein S9 YP_004399007.1 KEGG: lps:LPST_C0863 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13 YP_004399008.1 PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: lbr:LVIS_1659 pseudouridylate synthase YP_004399009.1 PFAM: Cobalt transport protein; KEGG: lbr:LVIS_1660 ABC-type cobalt transport system, permease component CbiQ related transporter YP_004399010.1 PFAM: ABC transporter-like; KEGG: efa:EF0238 cobalt transporter ATP-binding subunit; SMART: ATPase, AAA+ type, core YP_004399011.1 PFAM: ABC transporter-like; KEGG: lsl:LSL_1407 cobalt transport ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004399012.1 TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: lbr:LVIS_1663 ribosomal protein L17; PFAM: Ribosomal protein L17 YP_004399013.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: lbr:LVIS_1664 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal YP_004399014.1 KEGG: lrl:LC705_02464 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11 YP_004399015.1 KEGG: lfe:LAF_1491 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13 YP_004399016.1 PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: lrf:LAR_1371 50S ribosomal protein L36; HAMAP: Ribosomal protein L36 YP_004399017.1 SMART: RNA-binding domain, S1; TIGRFAM: Translation initiation factor IF-1; KEGG: lbr:LVIS_1668 translation initiation factor 1; HAMAP: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type YP_004399018.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: lsa:LSA1744 adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain YP_004399019.1 KEGG: lbr:LVIS_1670 preprotein translocase subunit SecY; TIGRFAM: SecY protein; PFAM: SecY protein YP_004399020.1 TIGRFAM: Ribosomal protein L15, bacterial-type; KEGG: lbr:LVIS_1671 ribosomal protein L15 YP_004399021.1 KEGG: lrl:LC705_02471 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain YP_004399022.1 KEGG: lbr:LVIS_1673 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, N-terminal; Ribosomal protein S5, C-terminal YP_004399023.1 KEGG: lps:LPST_C0841 ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5 YP_004399024.1 KEGG: lfe:LAF_1500 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain YP_004399025.1 PFAM: Ribosomal protein S8; KEGG: lbr:LVIS_1676 30S ribosomal protein S8 YP_004399026.1 KEGG: ppe:PEPE_1405 SSU ribosomal protein S14P; manually curated; PFAM: Ribosomal protein S14 YP_004399027.1 PFAM: Ribosomal protein L5; KEGG: lbr:LVIS_1678 50S ribosomal protein L5 YP_004399028.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: lbr:LVIS_1679 50S ribosomal protein L24; SMART: KOW YP_004399029.1 KEGG: lbr:LVIS_1680 ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e YP_004399030.1 KEGG: lsl:LSL_1426 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17 YP_004399031.1 KEGG: lbr:LVIS_1682 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29 YP_004399032.1 TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: ppe:PEPE_1411 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16 YP_004399033.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: lbr:LVIS_1684 30S ribosomal protein S3; SMART: K Homology YP_004399034.1 KEGG: lbr:LVIS_1685 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17 YP_004399035.1 KEGG: lps:LPST_C0829 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15 YP_004399036.1 KEGG: ppe:PEPE_1415 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain YP_004399037.1 PFAM: Ribosomal protein L25/L23; KEGG: lbr:LVIS_1688 ribosomal protein L23 YP_004399038.1 PFAM: Ribosomal protein L4/L1e; KEGG: lbr:LVIS_1689 50S ribosomal protein L4 YP_004399039.1 KEGG: lbr:LVIS_1690 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3 YP_004399040.1 TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: lps:LPST_C0824 30S ribosomal protein S10; PFAM: Ribosomal protein S10 YP_004399041.1 TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; KEGG: ppe:PEPE_1420 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal YP_004399042.1 KEGG: lbr:LVIS_1694 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7 YP_004399043.1 KEGG: lbr:LVIS_1695 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23 YP_004399044.1 PFAM: Peptidase A24A, N-terminal; KEGG: apr:Apre_0650 peptidase A24A domain protein YP_004399045.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: lbr:LVIS_1697 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5 YP_004399046.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase, beta subunit, bacterial-type; KEGG: lbr:LVIS_1698 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7 YP_004399047.1 KEGG: lbr:LVIS_1700 ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004399048.1 PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: lps:LPST_C0815 transcriptional regulator CtsR YP_004399049.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: lps:LPST_C0813 seryl-tRNA synthetase YP_004399050.1 KEGG: lsa:LSA1805 deoxyguanosine kinase; PFAM: Deoxynucleoside kinase YP_004399051.1 KEGG: lin:lin0543 tagatose 1,6-diphosphate aldolase; PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004399052.1 PFAM: Amino acid permease domain; KEGG: lbr:LVIS_1712 amino acid transporter YP_004399053.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lps:LPST_C0805 acetyltransferase (putative) YP_004399054.1 KEGG: lfe:LAF_1539 phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004399055.1 PFAM: Protein of unknown function DUF81; KEGG: lbr:LVIS_0345 permease YP_004399056.1 PFAM: Protein of unknown function DUF1634; KEGG: lsl:LSL_0181 hypothetical protein YP_004399057.1 KEGG: lpl:lp_3218 hypothetical protein YP_004399058.1 KEGG: ppe:PEPE_1824 hypothetical protein YP_004399059.1 PFAM: Transcription regulator PadR N-terminal-like; KEGG: lps:LPST_C2647 transcription regulator (putative) YP_004399060.1 KEGG: lbr:LVIS_1716 hypothetical protein YP_004399061.1 PFAM: Protein of unknown function DUF1212; KEGG: lbr:LVIS_1717 hypothetical protein YP_004399062.1 KEGG: lbr:LVIS_1718 Mn-dependent transcriptional regulator; PFAM: Iron dependent repressor; Iron dependent repressor, N-terminal; Ferrous iron transporter, FeoA subunit; SMART: Iron dependent repressor, diptheria toxin type; Ferrous iron transporter, FeoA subunit YP_004399063.1 KEGG: lfe:LAF_1544 cation efflux system protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004399064.1 KEGG: efa:EF2601 acyl carrier protein, putative; HAMAP: NADH-azoreductase, FMN-dependent; PFAM: Flavodoxin-like fold YP_004399065.1 KEGG: lbr:LVIS_1722 transcriptional regulator YP_004399066.1 KEGG: lbr:LVIS_1731 hypothetical protein YP_004399067.1 KEGG: lbr:LVIS_0155 hypothetical protein YP_004399070.1 KEGG: lga:LGAS_0020 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004399071.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lps:LPST_C2082 acetyltransferase (putative) YP_004399072.1 PFAM: Protein of unknown function DUF1003; KEGG: lbr:LVIS_1735 hypothetical protein YP_004399074.1 KEGG: lbr:LVIS_1736 pseudouridylate synthase, 23S RNA-specific; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004399075.1 KEGG: lbr:LVIS_1558 NAD(FAD)-dependent dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004399076.1 KEGG: lbr:LVIS_1527 hypothetical protein; HAMAP: Uncharacterised protein family UPF0145; PFAM: Uncharacterised protein family UPF0145 YP_004399077.1 KEGG: lbr:LVIS_2083 hypothetical protein YP_004399078.1 KEGG: lbr:LVIS_2092 hypothetical protein YP_004399079.1 KEGG: lsl:LSL_1744 hypothetical protein YP_004399080.1 PFAM: Aminotransferase class-III; TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: lfe:LAF_0723 acetylornithine aminotransferase YP_004399081.1 TIGRFAM: Acetylglutamate kinase; KEGG: lfe:LAF_0724 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase YP_004399082.1 PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: lfe:LAF_0725 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_004399083.1 KEGG: lfe:LAF_0726 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase, type 1; SMART: Semialdehyde dehydrogenase, NAD-binding YP_004399084.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: lps:LPST_C2090 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme YP_004399085.1 KEGG: lps:LPST_C2091 homoserine O-succinyltransferase; PFAM: Homoserine O-succinyltransferase YP_004399086.1 PFAM: Protein of unknown function DUF1212; KEGG: lcz:LCAZH_2908 hypothetical protein YP_004399087.1 KEGG: lcz:LCAZH_2907 hypothetical protein YP_004399088.1 KEGG: lps:LPST_C2097 NADH peroxidase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004399089.1 KEGG: ooe:OEOE_1649 saccharopine dehydrogenase or related protein YP_004399090.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: ppe:PEPE_1682 gamma-carboxymuconolactone decarboxylase subunit-like protein YP_004399091.1 KEGG: ppe:PEPE_1683 double-stranded beta-helix-like protein YP_004399092.1 KEGG: lps:LPST_C2342 transcription regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004399093.1 KEGG: lbr:LVIS_0317 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal YP_004399094.1 KEGG: lcz:LCAZH_2680 signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain YP_004399095.1 KEGG: lbr:LVIS_1715 membrane-associated phospholipid phosphatase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004399096.1 PFAM: Uncharacterised protein family YfhO; KEGG: lpl:lp_1435 integral membrane protein YP_004399097.1 PFAM: Drug/metabolite transporter; KEGG: bcz:pE33L466_0259 drug/metabolite exporter YP_004399098.1 KEGG: lbr:LVIS_0719 cyclopropane fatty acid synthase-like protein; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase YP_004399099.1 KEGG: lsa:LSA0421 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004399100.1 KEGG: lbr:LVIS_1724 major facilitator superfamily permease; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004399101.1 KEGG: lbr:LVIS_1723 hypothetical protein YP_004399102.1 PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: nth:Nther_1931 histidinol-phosphate aminotransferase YP_004399103.1 KEGG: lsl:LSL_0055 peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_004399104.1 KEGG: lcz:LCAZH_0914 major facilitator superfamily permease; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004399105.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lbr:LVIS_0869 threonine dehydrogenase related Zn-dependent dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004399106.1 KEGG: lwe:lwe2196 cell wall surface anchor family protein; TIGRFAM: Signal peptide, KxYKxGKxW motif; LPXTG-motif cell wall anchor; PFAM: Gram-positive anchor YP_004399107.1 TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbu:LBUL_1157 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004399108.1 KEGG: lca:LSEI_A02 transcriptional regulator; TIGRFAM: Copper transport repressor CopY/TcrY; PFAM: Penicillinase repressor YP_004399109.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lhe:lhv_1946 GCN5-related N-acetyltransferase YP_004399110.1 KEGG: lpl:lp_1812 lipoprotein precursor (putative) YP_004399111.1 PFAM: Glycoside hydrolase, family 25; KEGG: lbr:LVIS_0304 lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_004399112.1 KEGG: lrh:LGG_00554 aminopeptidase N; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal YP_004399113.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lme:LEUM_0909 short chain dehydrogenase YP_004399114.1 KEGG: lbr:LVIS_0229 transcriptional regulator; manually curated; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal YP_004399115.1 KEGG: ooe:OEOE_1528 hypothetical protein YP_004399117.1 PFAM: Sugar transport; KEGG: lfe:LAF_0399 sugar transport protein YP_004399118.1 KEGG: ckr:CKR_1514 hypothetical protein; TIGRFAM: Phage infection protein, YhgE, N-terminal; Phage infection protein, YhgE, C-terminal; PFAM: ABC-2 type transporter YP_004399119.1 KEGG: lbr:LVIS_1825 D-alanyl-D-alanine carboxypeptidase YP_004399120.1 KEGG: ckr:CKR_1515 hypothetical protein; TIGRFAM: Phage infection protein, YhgE, N-terminal; Phage infection protein, YhgE, C-terminal; PFAM: ABC-2 type transporter YP_004399121.1 PFAM: Protein of unknown function DUF161; Domain of unknown function DUF2179; KEGG: lsa:LSA1052 hypothetical protein YP_004399122.1 PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase; KEGG: lbr:LVIS_1759 GMP synthase YP_004399123.1 TIGRFAM: Bacterial pantothenate kinase; HAMAP: Bacterial pantothenate kinase; KEGG: lbr:LVIS_1761 pantothenate kinase YP_004399124.1 KEGG: lpl:lp_0910 DNA helicase (putative) YP_004399125.1 KEGG: lbr:LVIS_1764 phosphoglycerate mutase family protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004399126.1 PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: lme:LEUM_1097 pyrophosphatase YP_004399127.1 KEGG: lpl:lp_2636 hypothetical protein YP_004399128.1 KEGG: cdl:CDR20291_3046 MerR-family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004399129.1 KEGG: lpj:JDM1_2051 maltose O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004399130.1 KEGG: sga:GALLO_1207 short chain dehydrogenase YP_004399131.1 KEGG: ppe:PEPE_0546 transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004399132.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: lbr:LVIS_1765 ABC-type oligopeptide transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399133.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: lbr:LVIS_1766 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004399134.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_1767 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_004399135.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_1768 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_004399136.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lbr:LVIS_1769 ABC-type oligopeptide transport system, periplasmic component YP_004399137.1 KEGG: lbr:LVIS_1771 GTPase; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related YP_004399138.1 PFAM: Amino acid permease domain; KEGG: lpj:JDM1_0739 amino acid transport protein YP_004399139.1 KEGG: sgo:SGO_0841 oxidoreductase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; SMART: Polyketide synthase, enoylreductase YP_004399140.1 KEGG: ooe:OEOE_0042 LacI family transcription regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004399141.1 PFAM: MgtC/SapB transporter; KEGG: lga:LGAS_0017 Mg2+ transporter YP_004399142.1 KEGG: lrf:LAR_1423 glutamine ABC transporter permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004399143.1 KEGG: lbr:LVIS_1773 ABC-type amino acid transport system, permease component; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004399144.1 KEGG: lpl:lp_0881 glutamine ABC transporter, substrate binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor YP_004399145.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_1775 ABC-type polar amino acid transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399146.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: lpj:JDM1_0081 hypothetical protein YP_004399147.1 KEGG: lbr:LVIS_1776 hypothetical protein YP_004399148.1 KEGG: lbr:LVIS_1777 hypothetical protein YP_004399149.1 PFAM: Ferric-uptake regulator; KEGG: lsa:LSA0109 FUR family transcriptional regulator YP_004399150.1 PFAM: Guanylate kinase; KEGG: lme:LEUM_1839 guanylate kinase; SMART: Guanylate kinase/L-type calcium channel YP_004399151.1 PFAM: NUDIX hydrolase domain; KEGG: lps:LPST_C0677 hypothetical protein YP_004399152.1 PFAM: Cation/H+ exchanger; KEGG: lsl:LSL_1533 Na+/H+ antiporter YP_004399153.1 KEGG: lpl:lp_3127 hypothetical protein YP_004399154.1 KEGG: lbr:LVIS_2082 hypothetical protein YP_004399155.1 KEGG: ooe:OEOE_0371 NAD/NADP transhydrogenase beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit YP_004399156.1 KEGG: fra:Francci3_2947 NAD/NADP transhydrogenase alpha subunit-like protein YP_004399157.1 KEGG: ooe:OEOE_0369 NAD/NADP transhydrogenase alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal YP_004399158.1 KEGG: sha:SH2649 hypothetical protein; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004399159.1 KEGG: lbr:LVIS_0138 beta-D-glucuronidase; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich YP_004399160.1 KEGG: pjd:Pjdr2_4081 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004399161.1 KEGG: lbr:LVIS_1782 x-prolyl-dipeptidyl aminopeptidase; SMART: X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal; Peptidase S15/CocE/NonD, C-terminal YP_004399162.1 TIGRFAM: Peptidase S33, tricorn interacting factor 1; KEGG: lrf:LAR_1539 prolyl aminopeptidase; PFAM: Alpha/beta hydrolase fold-1 YP_004399163.1 KEGG: lps:LPST_C0154 sucrose operon repressor; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004399164.1 PFAM: Glycosyl hydrolase, family 13, catalytic domain; KEGG: lbr:LVIS_0309 trehalose-6-phosphate hydrolase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain YP_004399165.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic domain; TIGRFAM: Sucrose phosphorylase, GftA; KEGG: lci:LCK_01248 sucrose phosphorylase; PFAM: Glycosyl hydrolase, family 13, catalytic domain YP_004399166.1 KEGG: ppe:PEPE_0185 Na+/xyloside symporter related transporter; TIGRFAM: Sodium:galactoside symporter; PFAM: Major facilitator superfamily MFS-1 YP_004399167.1 PFAM: Protein of unknown function DUF81; KEGG: lpj:JDM1_0059 transport protein YP_004399168.1 KEGG: lbr:LVIS_2251 hypothetical protein YP_004399169.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: sed:SeD_A4225 mandelate racemase/muconate lactonizing enzyme family protein; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal YP_004399170.1 TIGRFAM: Lipoyltransferase/lipoate-protein ligase; KEGG: lfe:LAF_0831 lipoate-protein ligase; PFAM: Biotin/lipoate A/B protein ligase; Lipoate protein ligase, C-terminal YP_004399171.1 KEGG: ppe:PEPE_1584 ABC-type oligopeptide transport system, periplasmic component; manually curated; PFAM: Bacterial extracellular solute-binding protein, family 5 YP_004399172.1 KEGG: lbr:LVIS_1785 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004399173.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lbr:LVIS_1786 lactoylglutathione lyase related lyase YP_004399174.1 PFAM: Abortive infection protein; KEGG: lbr:LVIS_1787 metal-dependent membrane protease YP_004399175.1 TIGRFAM: Conserved hypothetical protein CHP01655; KEGG: llk:LLKF_1470 phage protein YP_004399176.1 PFAM: Protein of unknown function DUF2075; KEGG: ljo:LJ0827 hypothetical protein YP_004399177.1 PFAM: Amidohydrolase 3; KEGG: lrf:LAR_1808 hypothetical protein YP_004399178.1 KEGG: lbr:LVIS_1749 Na+/melibiose symporter related transporter; TIGRFAM: Proton/sugar symporter, LacY, bacterial type; PFAM: Proton/sugar symporter, LacY YP_004399179.1 KEGG: lbr:LVIS_1748 beta-xylosidase; PFAM: Glycoside hydrolase, family 43 YP_004399180.1 KEGG: lbr:LVIS_1746 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004399182.1 KEGG: lrf:LAR_1457 putative lipase/esterase YP_004399183.1 PFAM: Lipase, GDSL YP_004399184.1 KEGG: lsl:LSL_0100 CRISPR-associated Csn2 family protein YP_004399185.1 manually curated; TIGRFAM: CRISPR associated protein Cas2; KEGG: lsl:LSL_0099 CRISPR-associated protein; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2 YP_004399186.1 KEGG: lsl:LSL_0098 CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1 YP_004399187.1 TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: lsl:LSL_0095 hypothetical protein YP_004399188.1 KEGG: lbr:LVIS_0872 transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR YP_004399189.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: sar:SAR0325 putative reductase YP_004399190.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004399191.1 PFAM: ABC transporter substrate binding protein; KEGG: lbr:LVIS_1792 ABC-type uncharacterized transport system, periplasmic component YP_004399192.1 PFAM: ABC transporter permease; KEGG: lbr:LVIS_1793 ribose/xylose/arabinose/galactoside ABC-type transporter permease YP_004399193.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_1794 ABC-type uncharacterized transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399194.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: lbr:LVIS_2031 hypothetical protein YP_004399195.1 KEGG: lbr:LVIS_2032 hypothetical protein; TIGRFAM: Peptidase M20A, peptidase V-related; PFAM: Peptidase M20 YP_004399196.1 KEGG: ooe:OEOE_1682 D-xylose proton-symporter; TIGRFAM: Sugar/inositol transporter; PFAM: General substrate transporter YP_004399197.1 KEGG: elm:ELI_3019 transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004399198.1 TIGRFAM: Pyruvate, phosphate dikinase; KEGG: lrh:LGG_02351 pyruvate phosphate dikinase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme YP_004399199.1 KEGG: ooe:OEOE_1329 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Helix-turn-helix, type 11; SMART: Cystathionine beta-synthase, core YP_004399200.1 PFAM: Acyltransferase 3; KEGG: lrl:LC705_02218 acyltransferase 3 YP_004399201.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: cdf:CD1211 putative acetyltransferase YP_004399202.1 KEGG: lps:LPST_C1971 uracil transport protein; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease YP_004399203.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: lpj:JDM1_1163 acetyltransferase (putative) YP_004399204.1 KEGG: lbr:LVIS_0195 hypothetical protein YP_004399205.1 KEGG: lrl:LC705_02604 phospholipid-binding protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP YP_004399206.1 PFAM: UspA; KEGG: lfe:LAF_1762 hypothetical protein YP_004399207.1 KEGG: bse:Bsel_0669 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation YP_004399210.1 PFAM: Amino acid permease domain; KEGG: lki:LKI_06185 putative amino acid permease YP_004399211.1 PFAM: Protein of unknown function DUF81; KEGG: clj:CLJU_c08280 hypothetical protein YP_004399212.1 KEGG: sgo:SGO_0921 hypothetical protein YP_004399213.1 KEGG: lhe:lhv_1963 hypothetical protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004399214.1 KEGG: sgo:SGO_0919 ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004399215.1 PFAM: Cobalt transport protein; KEGG: lhe:lhv_1965 hypothetical protein YP_004399216.1 KEGG: sgo:SGO_0917 hypothetical protein YP_004399217.1 PFAM: NLP/P60; KEGG: cpe:PCP44 cell wall-binding protein YP_004399218.1 PFAM: Amino acid permease domain; KEGG: lfe:LAF_0705 amino acid transport protein YP_004399219.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lcz:LCAZH_2027 efflux pump antibiotic resistance protein YP_004399220.1 PFAM: Cadmium resistance transporter; KEGG: cbl:CLK_0237 quaternary ammonium compound-resistance protein YP_004399221.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: ppe:PEPE_0562 ATP-dependent DNA helicase RecQ; SMART: RQC domain; DEAD-like helicase, N-terminal; Helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain YP_004399222.1 PFAM: Protein of unknown function DUF389; KEGG: lfe:LAF_0704 hypothetical protein YP_004399223.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lrl:LC705_02676 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004399224.1 KEGG: lpj:JDM1_0068 hypothetical protein YP_004399225.1 TIGRFAM: Pyruvate oxidase; KEGG: lpl:lp_0849 pyruvate oxidase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004399226.1 TIGRFAM: Cytidyltransferase-related; KEGG: lpj:JDM1_0708 bifunctional protein: riboflavin kinase; FMN adenylyltransferase; PFAM: FAD synthetase YP_004399229.1 PFAM: NLPA lipoprotein; KEGG: lpl:lp_1746 amino acid ABC transporter, substrate binding protein YP_004399230.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ooe:OEOE_1055 ABC-type metal ion transport system, permease component YP_004399231.1 PFAM: ABC transporter-like; NIL domain; KEGG: lps:LPST_C1395 amino acid ABC transporter, ATP-binding protein; SMART: NIL domain; ATPase, AAA+ type, core YP_004399232.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: ppe:PEPE_0496 methionine synthase II (cobalamin-independent) YP_004399233.1 KEGG: lwe:lwe0022 SH3 domain-containing protein YP_004399234.1 TIGRFAM: Guanine deaminase; KEGG: lbr:LVIS_1043 cytosine deaminase-like protein; PFAM: Amidohydrolase 1 YP_004399236.1 KEGG: llc:LACR_1170 hypothetical protein; TIGRFAM: Bacterial surface protein 26-residue repeat; PFAM: Protein of unknown function DUF285, lipoprotein predicted YP_004399237.1 KEGG: lbr:LVIS_2251 hypothetical protein; TIGRFAM: Bacterial surface protein 26-residue repeat; PFAM: Protein of unknown function DUF285, lipoprotein predicted; Bacterial Ig-like YP_004399238.1 TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; KEGG: lbr:LVIS_0864 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004399239.1 PFAM: Protein of unknown function DUF1648; KEGG: llk:LLKF_2450 phage protein YP_004399240.1 KEGG: lrl:LC705_00657 beta-glucosidase; PFAM: Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal YP_004399241.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lci:LCK_00123 major facilitator superfamily permease YP_004399242.1 PFAM: Protein of unknown function DUF606; KEGG: llm:llmg_1937 hypothetical protein YP_004399243.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lsp:Bsph_0877 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR YP_004399244.1 PFAM: Uncharacterised protein family UPF0150; KEGG: spb:M28_Spy0999 phage protein YP_004399245.1 KEGG: lbr:LVIS_2266 hypothetical protein YP_004399246.1 KEGG: lbr:LVIS_1764 phosphoglycerate mutase family protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004399247.1 HAMAP: L-arabinose isomerase; KEGG: lbr:LVIS_1740 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_004399248.1 PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; KEGG: bha:BH3702 transcriptional regulator YP_004399250.1 PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: lci:LCK_00825 transcriptional regulator YP_004399251.1 KEGG: lci:LCK_00824 transport protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004399252.1 KEGG: lci:LCK_00823 hypothetical protein YP_004399253.1 KEGG: cch:Cag_1709 hypothetical protein YP_004399256.1 KEGG: lbr:LVIS_1825 D-alanyl-D-alanine carboxypeptidase YP_004399257.1 KEGG: lbr:LVIS_0489 hypothetical protein; TIGRFAM: Bacterial surface protein 26-residue repeat; PFAM: Protein of unknown function DUF285, lipoprotein predicted; Protein of unknown function DUF1085 YP_004399258.1 KEGG: lfe:LAF_0703 hypothetical protein YP_004399259.1 KEGG: lrf:LAR_1729 putative sugar kinase; TIGRFAM: YjeF-related protein, N-terminal; PFAM: YjeF-related protein, N-terminal YP_004399260.1 PFAM: Peptidase M15D, VanX D-ala-D-ala dipeptidase; KEGG: lsl:LSL_1373 D-alanyl-D-alanine dipeptidase YP_004399261.1 KEGG: lcb:LCABL_01740 hypothetical protein YP_004399262.1 PFAM: Protein of unknown function DUF1680; KEGG: pjd:Pjdr2_4282 protein of unknown function DUF1680 YP_004399263.1 KEGG: gyc:GYMC61_2733 hypothetical protein YP_004399264.1 KEGG: pjd:Pjdr2_3612 alpha-L-arabinofuranosidase domain protein; PFAM: Carbohydrate-binding, CenC-like; Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal YP_004399265.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lrl:LC705_00050 MFS superfamily melibiose:Na transport protein YP_004399266.1 KEGG: ttm:Tthe_0656 alpha-L-arabinofuranosidase domain protein; PFAM: Alpha-L-arabinofuranosidase, C-terminal; SMART: Alpha-L-arabinofuranosidase, C-terminal YP_004399267.1 KEGG: lbr:LVIS_1746 transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004399268.1 KEGG: lbr:LVIS_2131 hypothetical protein YP_004399269.1 KEGG: lbr:LVIS_2132 choloylglycine hydrolase; PFAM: Choloylglycine hydrolase YP_004399270.1 KEGG: lpj:JDM1_1577 HAD superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3 YP_004399271.1 PFAM: ABC-type thiamin-related transport system, permease component 1, predicted; KEGG: lfe:LAF_1705 hypothetical protein YP_004399272.1 PFAM: ABC transporter-like; KEGG: lpj:JDM1_0202 ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core YP_004399273.1 PFAM: Cobalt transport protein; KEGG: lpl:lp_0217 ABC transporter, permease protein YP_004399275.1 KEGG: lbr:LVIS_1832 hypothetical protein YP_004399277.1 KEGG: lbr:LVIS_1834 hypothetical protein YP_004399278.1 KEGG: lbr:LVIS_1835 hypothetical protein YP_004399279.1 PFAM: Asparaginase/glutaminase; KEGG: lbr:LVIS_1836 L-asparaginase; SMART: Asparaginase/glutaminase YP_004399280.1 KEGG: lfe:LAF_0748 hypothetical protein YP_004399281.1 PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: lrl:LC705_01026 spermidine/putrescine ABC transporter ATPase; SMART: ATPase, AAA+ type, core YP_004399282.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lpj:JDM1_0282 spermidine/putrescine ABC transporter, permease protein YP_004399283.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_1861 spermidine/putrescine ABC transporter permease protein YP_004399284.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: lpj:JDM1_0280 spermidine/putrescine ABC transporter, substrate binding protein YP_004399285.1 KEGG: lbr:LVIS_1867 hypothetical protein YP_004399286.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lps:LPST_C0293 transport protein YP_004399287.1 SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lps:LPST_C0102 cation transporting P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal YP_004399288.1 KEGG: efa:EF3177 hypothetical protein YP_004399289.1 KEGG: ooe:OEOE_1183 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal YP_004399290.1 PFAM: Metallo-dependent phosphatase; KEGG: sca:Sca_2378 hypothetical protein YP_004399291.1 SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; KEGG: lrf:LAR_0598 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding YP_004399292.1 KEGG: lrf:LAR_0715 amino acid aminotransferase; PFAM: Aminotransferase, class I/classII YP_004399293.1 PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase, bacterial/plant; KEGG: lde:LDBND_1028 dihydrodipicolinate reductase (DhpR) YP_004399294.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: ljf:FI9785_1061 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase YP_004399295.1 PFAM: Peptidase M20; Peptidase M20, dimerisation; TIGRFAM: Peptidase M20D, amidohydrolase; HAMAP: N-acetyldiaminopimelate deacetylase; KEGG: lrf:LAR_0594 amino acid amidohydrolase YP_004399296.1 PFAM: Tetrahydrodipicolinate succinyltransferase N-terminal; Bacterial transferase hexapeptide repeat; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; KEGG: lam:LA2_04475 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase YP_004399297.1 TIGRFAM: Diaminopimelate decarboxylase; KEGG: lrf:LAR_0592 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal YP_004399298.1 KEGG: lfe:LAF_0853 aspartate kinase; TIGRFAM: Aspartate kinase domain; PFAM: Aspartate/glutamate/uridylate kinase YP_004399299.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: lhe:lhv_0902 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase YP_004399302.1 KEGG: lps:LPST_C0253 DNA helicase (putative); PFAM: DEAD2; SMART: Helicase, ATP-dependent, c2 type; Helicase-like, DEXD box c2 type YP_004399303.1 KEGG: lps:LPST_C0746 2-hydroxyhepta-2,4-diene-1,7-dioateisomerase / 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase (putative); PFAM: Fumarylacetoacetase, C-terminal-like YP_004399304.1 KEGG: lbr:LVIS_1877 3-carboxymuconate cyclase; PFAM: Lactonase, 7-bladed beta propeller YP_004399305.1 KEGG: ppe:PEPE_0305 hypothetical protein YP_004399306.1 PFAM: Ferric-uptake regulator; KEGG: lrf:LAR_1232 ferric uptake regulator YP_004399307.1 KEGG: lbr:LVIS_1883 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2 YP_004399308.1 TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; HAMAP: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; KEGG: lcb:LCABL_25360 glutamate 5-kinase (gamma-glutamyl kinase) (GK); PFAM: Aspartate/glutamate/uridylate kinase YP_004399309.1 PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: lrl:LC705_02359 gamma-glutamyl phosphate reductase YP_004399310.1 KEGG: lps:LPST_C1537 transcription regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR YP_004399311.1 SMART: Rhodanese-like; KEGG: lbr:LVIS_0852 rhodanese-related sulfurtransferase YP_004399312.1 PFAM: ABC-type glycine betaine transport system, substrate-binding domain; Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_0257 ABC-type proline/glycine betaine transport system, permease and substrate binding protein YP_004399313.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_0256 ABC-type proline/glycine betaine transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399314.1 PFAM: YibE/F-like; KEGG: lbr:LVIS_1885 multitransmembrane protein YP_004399315.1 PFAM: YibE/F-like; KEGG: lbr:LVIS_1886 multitransmembrane protein YP_004399316.1 PFAM: UspA; KEGG: lbr:LVIS_1888 UspA family nucleotide-binding protein YP_004399317.1 KEGG: lfe:LAF_1370 acyl-CoA hydrolase YP_004399318.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: ooe:OEOE_0745 threonine dehydrogenase or related Zn-dependent dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004399319.1 KEGG: lcz:LCAZH_2386 putative transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004399320.1 PFAM: Cation efflux protein; KEGG: lcz:LCAZH_2385 integral membrane protein YP_004399321.1 PFAM: Branched-chain amino acid transport, AzlD; KEGG: llk:LLKF_1764 branched-chain amino acid transport protein AzlD YP_004399322.1 PFAM: Branched-chain amino acid transport, permease; KEGG: llk:LLKF_1765 branched-chain amino acid transport protein AzlC YP_004399323.1 manually curated; PFAM: Appr-1-p processing; KEGG: lfe:LAF_1804 hypothetical protein; SMART: Appr-1-p processing YP_004399324.1 KEGG: lbr:LVIS_2111 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core YP_004399327.1 KEGG: lps:LPST_C2130 hypothetical protein; TIGRFAM: Polyphosphate:nucleotide phosphotransferase, PPK2; PFAM: Polyphosphate kinase-2-related YP_004399328.1 KEGG: lps:LPST_C2821 endopeptidase PepO; PFAM: Peptidase M13; Peptidase M13, neprilysin, C-terminal YP_004399329.1 KEGG: tjr:TherJR_2721 ROK family protein; PFAM: ROK YP_004399332.1 TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: lbr:LVIS_1919 methionine aminopeptidase; PFAM: Peptidase M24, structural domain YP_004399333.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: lps:LPST_C2747 low temperature requirement C protein (putative) YP_004399334.1 PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: Methylpurine-DNA glycosylase (MPG); HAMAP: Methylpurine-DNA glycosylase (MPG); KEGG: lrf:LAR_1686 3-methyladenine DNA glycosylase YP_004399335.1 PFAM: Protein of unknown function DUF488; KEGG: lps:LPST_C2751 protein of hypothetical function DUF488 YP_004399336.1 TIGRFAM: Beta-phosphoglucomutase; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: lps:LPST_C0054 beta-phosphoglucomutase; PFAM: Haloacid dehalogenase-like hydrolase YP_004399337.1 KEGG: lbr:LVIS_1929 hypothetical protein YP_004399338.1 KEGG: efa:EF1609 hypothetical protein; HAMAP: Uncharacterised protein family UPF0316; PFAM: Domain of unknown function DUF2179 YP_004399339.1 PFAM: Ribonuclease H domain; KEGG: lps:LPST_C2133 ribonuclease H (putative) YP_004399340.1 KEGG: lbr:LVIS_1931 hypothetical protein YP_004399341.1 KEGG: lga:LGAS_0057 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase YP_004399342.1 PFAM: Glycosyl transferase, family 8; KEGG: lrl:LC705_01057 lipopolysaccharide biosynthesis glycosyltransferase YP_004399343.1 KEGG: lcz:LCAZH_0988 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_004399344.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: lcz:LCAZH_2092 multidrug ABC transporter ATPase/permease; SMART: ATPase, AAA+ type, core YP_004399345.1 PFAM: Glycosyl transferase, family 8; KEGG: lrl:LC705_01056 lipopolysaccharide biosynthesis glycosyltransferase YP_004399346.1 KEGG: lbr:LVIS_1932 dihydroorotase; PFAM: Amidohydrolase 3 YP_004399347.1 TIGRFAM: Potassium uptake protein TrkH; KEGG: lrf:LAR_1464 potassium uptake protein; PFAM: Cation transporter YP_004399348.1 PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: efa:EF2910 potassium uptake protein YP_004399349.1 KEGG: lbr:LVIS_1887 hypothetical protein YP_004399350.1 TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: lbr:LVIS_1934 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_004399351.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: blb:BBMN68_861 tas2 YP_004399352.1 PFAM: Cation/H+ exchanger; KEGG: lcb:LCABL_07040 YvgP YP_004399354.1 PFAM: Flavodoxin-like fold; KEGG: lbr:LVIS_1936 putative NADPH-quinone reductase (modulator of drug activity B) YP_004399355.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: lfe:LAF_0950 hypothetical protein YP_004399356.1 KEGG: lhe:lhv_0683 ATP-dependent Clp protease, ATP-binding subunit; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; UvrB/UvrC protein; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core YP_004399357.1 KEGG: lps:LPST_C0932 cold shock protein CspP; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein YP_004399358.1 KEGG: lps:LPST_C0902 cell surface hydrolase YP_004399359.1 PFAM: Nitroreductase-like; KEGG: lbr:LVIS_0838 oxidoreductase YP_004399360.1 KEGG: lfe:LAF_0779 lactose transport protein; TIGRFAM: Sodium:galactoside symporter; Phosphotransferase system, sugar-specific permease EIIA 1 domain; PFAM: Phosphotransferase system, sugar-specific permease EIIA 1 domain YP_004399361.1 KEGG: lpl:lp_2393 lipoprotein precursor YP_004399362.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: lps:LPST_C1988 ABC transporter, ATP-binding and permease protein; SMART: ATPase, AAA+ type, core YP_004399363.1 PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: lps:LPST_C1989 multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein; SMART: ATPase, AAA+ type, core YP_004399364.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: lpj:JDM1_0305 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004399365.1 KEGG: csh:Closa_3024 Cna B domain protein; TIGRFAM: LPXTG-motif cell wall anchor; PFAM: Collagen-binding surface protein Cna-like, B-type domain; Gram-positive anchor YP_004399366.1 KEGG: cbr:CBG09244 Hypothetical protein CBG09244 YP_004399368.1 PFAM: PemK-like protein; KEGG: lpl:lp_2882 cell growth regulatory protein YP_004399369.1 PFAM: Protein of unknown function DUF159; KEGG: ooe:OEOE_1568 hypothetical protein YP_004399370.1 KEGG: lbr:LVIS_0166 3-oxoacyl-acyl carrier protein reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004399371.1 KEGG: lmy:LM5923_0514 hypothetical protein; manually curated; PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding YP_004399372.1 PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: vdi:Vdis_1965 hypothetical protein YP_004399373.1 KEGG: ols:Olsu_0523 acetyl-CoA acetyltransferase YP_004399374.1 TIGRFAM: Lipoyltransferase/lipoate-protein ligase; KEGG: lfe:LAF_0831 lipoate-protein ligase; PFAM: Biotin/lipoate A/B protein ligase YP_004399375.1 PFAM: Glycine cleavage H-protein; KEGG: lbr:LVIS_1951 glycine cleavage system H protein (lipoate-binding) YP_004399376.1 KEGG: lcz:LCAZH_2435 hypothetical protein YP_004399377.1 KEGG: bde:BDP_1686 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004399378.1 KEGG: lfe:LAF_1048 gluconate transport protein; TIGRFAM: Gluconate transporter; PFAM: Gluconate transporter YP_004399379.1 KEGG: lbr:LVIS_0108 short-chain alcohol dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004399381.1 KEGG: lbr:LVIS_1949 hypothetical protein YP_004399382.1 KEGG: bcy:Bcer98_1648 DegV family protein; TIGRFAM: DegV; PFAM: DegV YP_004399383.1 KEGG: lbr:LVIS_1901 transcription regulator of beta-galactosidase gene; PFAM: HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI YP_004399384.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; KEGG: lbr:LVIS_1907 phosphomannomutase YP_004399387.1 PFAM: Abortive infection protein; KEGG: lrh:LGG_02395 immunity protein PlnI, membrane-bound protease CAAX family YP_004399388.1 manually curated; KEGG: apr:Apre_1828 hypothetical protein YP_004399389.1 TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: lbr:LVIS_0679 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase YP_004399390.1 PFAM: Bacterial Ig-like; KEGG: lbr:LVIS_2251 hypothetical protein YP_004399391.1 KEGG: lsa:LSA0028 hypothetical protein; TIGRFAM: DegV; PFAM: DegV YP_004399392.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lrf:LAR_0268 putative transport protein YP_004399393.1 SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: lcz:LCAZH_0910 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_004399394.1 KEGG: lcz:LCAZH_2883 hypothetical protein YP_004399395.1 KEGG: lbr:LVIS_2082 hypothetical protein YP_004399397.1 KEGG: lsl:LSL_0323 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004399398.1 KEGG: lbr:LVIS_1365 phosphoglycerate mutase family protein; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004399399.1 PFAM: Zinc/iron permease; KEGG: acl:ACL_0742 GufA-like protein, putative zinc transporter YP_004399403.1 KEGG: lfe:LAF_0414 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004399404.1 KEGG: lbr:LVIS_1739 acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat YP_004399405.1 HAMAP: L-arabinose isomerase; KEGG: lbr:LVIS_1740 L-arabinose isomerase; PFAM: L-arabinose isomerase YP_004399406.1 manually curated; TIGRFAM: Sugar/inositol transporter; KEGG: cbe:Cbei_0109 sugar transporter; PFAM: General substrate transporter YP_004399407.1 KEGG: lsa:LSA1861 AraC family regulator; PFAM: HTH transcriptional regulator, GntR; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, GntR YP_004399409.1 KEGG: ppe:PEPE_0202 aldose 1-epimerase; PFAM: Aldose 1-epimerase YP_004399410.1 PFAM: Abortive infection protein; KEGG: sga:GALLO_0817 hypothetical protein YP_004399411.1 PFAM: Acetate/butyrate kinase; TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: lps:LPST_C0172 acetate kinase YP_004399412.1 TIGRFAM: Gluconate kinase; KEGG: lbr:LVIS_0143 gluconate kinase; PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal YP_004399413.1 KEGG: lbr:LVIS_0142 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004399414.1 HAMAP: Uronate isomerase; KEGG: lbr:LVIS_0135 glucuronate isomerase; PFAM: Uronate isomerase YP_004399415.1 KEGG: lbr:LVIS_0139 fructuronate reductase; PFAM: Mannitol dehydrogenase, C-terminal; Mannitol dehydrogenase, N-terminal YP_004399416.1 KEGG: lbr:LVIS_0145 transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal YP_004399417.1 KEGG: eat:EAT1b_2424 ABC-type phosphate transport system periplasmic component-like protein YP_004399418.1 KEGG: lbr:LVIS_1825 D-alanyl-D-alanine carboxypeptidase YP_004399419.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bde:BDP_0159 MFS-family sugar transporter YP_004399420.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: lrl:LC705_02433 alpha-L-rhamnosidase YP_004399421.1 PFAM: Major facilitator superfamily MFS-1; KEGG: cko:CKO_03734 hypothetical protein YP_004399422.1 SMART: Helix-turn-helix, AraC type, DNA binding domain; KEGG: lps:LPST_C2942 AraC family transcriptional regulator YP_004399423.1 TIGRFAM: 6-phosphogluconate dehydrogenase-related protein; KEGG: lbr:LVIS_0144 6-phosphogluconate dehydrogenase-like protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal YP_004399424.1 PFAM: Uncharacterised protein family YfhO; KEGG: lsa:LSA1203 hypothetical protein YP_004399425.1 PFAM: Glycoside hydrolase, family 25; KEGG: lbr:LVIS_1967 lyzozyme M1 (1,4-beta-N-acetylmuramidase) YP_004399426.1 PFAM: NLP/P60; KEGG: lbr:LVIS_2133 cell wall-associated hydrolase YP_004399427.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: lrl:LC705_00590 redox protein, regulator of disulfide bond formation YP_004399428.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lcz:LCAZH_1128 major facilitator superfamily permease YP_004399429.1 PFAM: Amino acid permease domain; KEGG: lbr:LVIS_1781 amino acid transporter YP_004399430.1 PFAM: Protein of unknown function DUF1211, TMEM175; KEGG: lrl:LC705_02600 membrane protein YP_004399431.1 KEGG: lrf:LAR_0757 hypothetical protein YP_004399432.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lsa:LSA1832 putative zinc-containing alcohol dehydrogenase (oxidoreductase); SMART: Polyketide synthase, enoylreductase YP_004399433.1 KEGG: lbr:LVIS_0182 hypothetical protein YP_004399434.1 KEGG: lbr:LVIS_0181 hypothetical protein YP_004399435.1 KEGG: lbr:LVIS_0180 lipoate-protein ligase A; TIGRFAM: Lipoyltransferase/lipoate-protein ligase; PFAM: Lipoate protein ligase, C-terminal; Biotin/lipoate A/B protein ligase YP_004399436.1 PFAM: UspA; KEGG: ppe:PEPE_0355 universal stress protein UspA-like nucleotide-binding protein YP_004399437.1 KEGG: lbr:LVIS_0168 pseudouridylate synthase, 23S RNA-specific; TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F YP_004399438.1 KEGG: ooe:OEOE_1519 amidase; PFAM: Amidase YP_004399439.1 KEGG: lrl:LC705_02738 cell envelope-associated proteinase, lactocepin PrtR; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase S8A, DUF1034 C-terminal YP_004399440.1 HAMAP: phosphoketolase; KEGG: lfe:LAF_1747 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal YP_004399441.1 KEGG: lpj:JDM1_0312 transport protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004399442.1 KEGG: lbr:LVIS_0159 transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR YP_004399443.1 KEGG: lbr:LVIS_0158 hypothetical protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain YP_004399444.1 KEGG: lbr:LVIS_0157 hypothetical protein YP_004399445.1 KEGG: ppe:PEPE_1447 HD superfamily hydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain YP_004399447.1 KEGG: lhe:lhv_1951 hypothetical protein YP_004399448.1 KEGG: lhe:lhv_1952 hypothetical protein YP_004399449.1 KEGG: lbr:LVIS_0119 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; Aldehyde dehydrogenase domain YP_004399450.1 PFAM: Protein of unknown function DUF1836; KEGG: lbr:LVIS_0117 BS_ykrK family protein YP_004399451.1 TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbr:LVIS_0116 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004399452.1 KEGG: lbr:LVIS_0114 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain YP_004399453.1 KEGG: lpl:lp_2861 galactoside O-acetyltransferase YP_004399454.1 PFAM: Auxin efflux carrier; KEGG: lps:LPST_C2323 malate transport protein (putative) YP_004399455.1 KEGG: lps:LPST_C2195 hypothetical protein YP_004399456.1 KEGG: lbr:LVIS_0110 hemolysin-like protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core YP_004399457.1 PFAM: Uncharacterised protein family YfhO; KEGG: lbr:LVIS_1311 glycosyltransferase YP_004399458.1 PFAM: Ribonucleotide reductase Class Ib, NrdI; KEGG: lrl:LC705_00737 flavoprotein NrdI YP_004399459.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_0101 major facilitator superfamily permease YP_004399460.1 KEGG: lrf:LAR_0414 galactoside O-acetyltransferase YP_004399461.1 KEGG: lbr:LVIS_0100 hypothetical protein YP_004399462.1 TIGRFAM: Glucose-6-phosphate dehydrogenase; KEGG: lbr:LVIS_0097 glucose-6-phosphate 1-dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase, C-terminal; Glucose-6-phosphate dehydrogenase, NAD-binding YP_004399463.1 TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; KEGG: lps:LPST_C1216 phosphogluconate dehydrogenase (decarboxylating); PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding YP_004399464.1 PFAM: PemK-like protein; KEGG: lcb:LCABL_00900 cell growth regulatory protein YP_004399466.1 PFAM: Domain of unknown function DUF1975; Glycosyl transferase, group 1; KEGG: lrf:LAR_1190 poly(glycerol-phosphate) alpha-glucosyltransferase YP_004399467.1 KEGG: spu:576423 similar to spicule matrix protein SM29; TIGRFAM: Signal peptide, KxYKxGKxW motif; LPXTG-motif cell wall anchor; PFAM: Gram-positive anchor YP_004399468.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: ppe:PEPE_0920 dinucleotide-binding protein YP_004399469.1 KEGG: ppe:PEPE_0919 coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein; TIGRFAM: Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative; PFAM: Luciferase-like, subgroup YP_004399470.1 PFAM: Abortive infection bacteriophage resistance-related; KEGG: san:gbs1223 hypothetical protein YP_004399471.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004399472.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine monophosphate synthase; KEGG: bpb:bpr_I1028 thiamine-phosphate pyrophosphorylase ThiE; PFAM: Thiamine monophosphate synthase YP_004399473.1 KEGG: lme:LEUM_1158 sulfur transfer protein for thiamine biosynthesis; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS YP_004399474.1 KEGG: lki:LKI_04015 thiamine biosynthesis protein ThiF; TIGRFAM: Thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold YP_004399475.1 KEGG: lme:LEUM_1156 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis YP_004399476.1 TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: bcl:ABC3738 allantoate amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation YP_004399477.1 PFAM: Sodium:dicarboxylate symporter; KEGG: efa:EF0387 sodium/dicarboxylate symporter family protein YP_004399479.1 KEGG: lbr:LVIS_0087 hypothetical protein YP_004399480.1 KEGG: lbr:LVIS_0394 putative multicopper oxidase; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2 YP_004399481.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: sha:SH1912 transposase for ISSha1 YP_004399482.1 PFAM: Sodium:dicarboxylate symporter; KEGG: lbr:LVIS_0085 Na+/H+-dicarboxylate symporter YP_004399483.1 TIGRFAM: Thiolase; KEGG: lsa:LSA1486 putative acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase); PFAM: Thiolase, N-terminal; Thiolase, C-terminal YP_004399485.1 PFAM: CsbD-like; KEGG: lrl:LC705_02349 CsbD-like superfamily protein YP_004399486.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: ppe:PEPE_0038 acetyltransferase YP_004399488.1 PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; KEGG: lki:LKI_03365 cystathionine beta-lyase YP_004399489.1 TIGRFAM: DNA helicase subunit AddA; HAMAP: DNA helicase subunit AddA; KEGG: lbr:LVIS_2267 ATP-dependent exoDNAse (exonuclease V) beta subunit; PFAM: DNA helicase, UvrD/REP type YP_004399490.1 HAMAP: DNA helicase subunit RexB; KEGG: lbr:LVIS_2268 ATP-dependent nuclease, subunit B YP_004399491.1 KEGG: lbr:LVIS_2271 hypothetical protein YP_004399492.1 KEGG: lbr:LVIS_2272 saccharopine dehydrogenase related protein YP_004399493.1 PFAM: NADP-dependent oxidoreductase domain; KEGG: ooe:OEOE_0036 aldo/keto reductase YP_004399494.1 KEGG: lbr:LVIS_0166 3-oxoacyl-acyl carrier protein reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004399495.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: lbr:LVIS_2274 xanthine/uracil/vitamin C permease YP_004399496.1 PFAM: Protein of unknown function DUF988; KEGG: lbr:LVIS_2280 hypothetical protein YP_004399497.1 KEGG: lrf:LAR_1724 glycerol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type YP_004399498.1 KEGG: lrl:LC705_00608 NADPH:quinone reductase-like Zn-dependent oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase YP_004399499.1 KEGG: ppe:PEPE_1663 RelA_SpoT domain-containing protein; PFAM: RelA/SpoT; SMART: RelA/SpoT YP_004399500.1 HAMAP: Cardiolipin synthase; PFAM: Phospholipase D/Transphosphatidylase; KEGG: lbr:LVIS_2288 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthase-like protein; SMART: Phospholipase D/Transphosphatidylase YP_004399501.1 KEGG: lbr:LVIS_2289 hypothetical protein YP_004399502.1 KEGG: bpb:bpr_I0906 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain YP_004399503.1 PFAM: Bacterial alpha-L-rhamnosidase; Bacterial alpha-L-rhamnosidase N-terminal; KEGG: bde:BDP_0161 alpha-L-rhamnosidase YP_004399504.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lps:LPST_C2845 sugar transport protein YP_004399505.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lps:LPST_C2843 sugar transport protein YP_004399506.1 PFAM: Methyltransferase type 11; KEGG: lca:LSEI_0437 SAM-dependent methyltransferase YP_004399507.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: lpj:JDM1_0363 hypothetical protein YP_004399508.1 KEGG: ccu:Ccur_10250 hypothetical protein YP_004399509.1 PFAM: Protein of unknown function DUF1801; KEGG: rci:RCIX1712 hypothetical protein YP_004399510.1 PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: lrh:LGG_00102 anthranilate phosphoribosyltransferase YP_004399511.1 KEGG: lcb:LCABL_00750 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase YP_004399512.1 KEGG: lrl:LC705_00087 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI) YP_004399513.1 PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain/beta chain-like; KEGG: lcb:LCABL_00730 tryptophan synthase subunit beta YP_004399514.1 PFAM: Tryptophan synthase, alpha chain; TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: lrh:LGG_00098 tryptophan synthase subunit alpha YP_004399515.1 manually curated YP_004399516.1 PFAM: NADPH-dependent FMN reductase; KEGG: lbr:LVIS_2252 flavoprotein YP_004399517.1 KEGG: lbr:LVIS_0369 hypothetical protein YP_004399518.1 KEGG: lki:LKI_03535 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004399519.1 KEGG: lki:LKI_03530 hypothetical protein YP_004399520.1 PFAM: Polysaccharide biosynthesis protein; KEGG: lbr:LVIS_2135 polysaccharide transporter YP_004399524.1 KEGG: lrl:LC705_02827 transportation permease, UpsA YP_004399525.1 TIGRFAM: Transcription activator MutR, C-terminal; KEGG: lcz:LCAZH_2846 UpsR YP_004399526.1 PFAM: Glutathione S-transferase, C-terminal; KEGG: lme:LEUM_0107 glutathione S-transferase YP_004399527.1 KEGG: lbr:LVIS_0233 protease; PFAM: Peptidase S53, propeptide; SMART: Peptidase S53, propeptide YP_004399528.1 PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: lbr:LVIS_0174 ABC-type oligopeptide transport system, periplasmic component YP_004399529.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_0175 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_004399530.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: lbr:LVIS_0176 ABC-type dipeptide/oligopeptide/nickel transport system, permease component YP_004399531.1 PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: lbr:LVIS_0177 ABC-type oligopeptide transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399532.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: lbr:LVIS_0178 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal YP_004399533.1 PFAM: Integrase, catalytic core; KEGG: lps:LPST_P0025 ISLpl1 transposase YP_004399534.1 PFAM: Glycosyl transferase, family 2; KEGG: lpj:JDM1_1537 glycosyltransferase (putative) YP_004399535.1 PFAM: Collagen binding; KEGG: lps:LPST_C0159 cell surface protein precursor YP_004399536.1 KEGG: lps:LPST_C1467 integral membrane protein YP_004399537.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: ooe:OEOE_0749 putative NADH-flavin reductase YP_004399538.1 KEGG: lbr:LVIS_0358 maltose phosphorylase; PFAM: Glycoside hydrolase, family 65, central catalytic; Glycoside hydrolase, family 65, N-terminal; Glycoside hydrolase, family 65, C-terminal YP_004399539.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_0357 major facilitator superfamily permease YP_004399540.1 KEGG: ooe:OEOE_1708 branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase; PFAM: ROK YP_004399541.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: ooe:OEOE_1707 threonine dehydrogenase or related Zn-dependent dehydrogenase; SMART: Polyketide synthase, enoylreductase YP_004399542.1 KEGG: lbr:LVIS_2161 hypothetical protein YP_004399543.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ooe:OEOE_1705 methylmalonyl-CoA epimerase YP_004399544.1 HAMAP: Phosphoglucose isomerase (PGI); KEGG: lbr:LVIS_1312 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI) YP_004399546.1 KEGG: lbr:LVIS_0433 major facilitator superfamily permease; manually curated; PFAM: Major facilitator superfamily MFS-1 YP_004399547.1 manually curated; KEGG: lfe:LAF_1723 hypothetical protein YP_004399551.1 KEGG: lbr:LVIS_0356 transcriptional regulator; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI YP_004399552.1 KEGG: lbr:LVIS_2291 hypothetical protein YP_004399553.1 PFAM: Glycerophosphoryl diester phosphodiesterase, membrane domain; Glycerophosphoryl diester phosphodiesterase; KEGG: lsl:LSL_1710 glycerophosphodiester phosphodiesterase YP_004399554.1 KEGG: lbr:LVIS_2296 cysteine aminopeptidase; PFAM: Peptidase C1B, bleomycin hydrolase YP_004399555.1 PFAM: Protein of unknown function DUF1393; KEGG: lfe:LAF_0937 hypothetical protein YP_004399556.1 KEGG: lsl:LSL_1333 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0340; PFAM: Uncharacterised protein family UPF0340 YP_004399557.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: lfe:LAF_0938 pyridoxal kinase YP_004399558.1 PFAM: Protein of unknown function DUF1275; KEGG: lbr:LVIS_2113 hypothetical protein YP_004399559.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: lbr:LVIS_0258 hypothetical protein YP_004399561.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_2244 major facilitator superfamily permease YP_004399562.1 KEGG: lam:LA2_01060 hypothetical protein YP_004399564.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004399565.1 KEGG: lbr:LVIS_1840 ABC-type Na+ efflux pump, permease component YP_004399566.1 PFAM: ABC transporter-like; KEGG: lbr:LVIS_1839 ABC-type uncharacterized transport system, ATPase component; SMART: ATPase, AAA+ type, core YP_004399569.1 PFAM: Phosphoribosyltransferase; KEGG: lhe:lhv_1918 adenine phosphoribosyltransferase YP_004399570.1 KEGG: lam:LA2_00225 ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent YP_004399571.1 TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: lga:LGAS_1506 Cob(I)alamin adenosyltransferase family protein; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type YP_004399572.1 KEGG: lsl:LSL_0308 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_004399573.1 KEGG: ppe:PEPE_1617 malate dehydrogenase; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding YP_004399574.1 HAMAP: Fumarate hydratase, class II; KEGG: lbr:LVIS_0714 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal YP_004399575.1 KEGG: esi:Exig_0336 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like YP_004399578.1 KEGG: efa:EF3205 hypothetical protein YP_004399579.1 KEGG: sak:SAK_1777 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14 YP_004399580.1 KEGG: lbr:LVIS_A12 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004399581.1 PFAM: Abortive infection protein; KEGG: lbr:LVIS_0840 immunity protein PlnI YP_004399582.1 KEGG: lps:LPST_C2151 ABC transporter, permease protein YP_004399583.1 KEGG: lbr:LVIS_2000 ABC transporter ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core YP_004399584.1 KEGG: lbr:LVIS_2001 transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR YP_004399585.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004399587.1 manually curated; KEGG: lhe:lhv_1988 putative transposase YP_004399588.1 PFAM: Integrase, catalytic core; KEGG: lcr:LCRIS_00542 transposase YP_004399590.1 KEGG: bcz:pE33L466_0162 transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004399591.1 PFAM: Protein of unknown function DUF2174, N-terminal; KEGG: lcb:LCABL_07590 hypothetical protein YP_004399592.1 KEGG: bce:BC1032 transcriptional repressor; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3 YP_004399593.1 KEGG: lsp:Bsph_0516 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal YP_004399594.1 KEGG: bcl:ABC0185 hypothetical protein YP_004399595.1 SMART: Helix-turn-helix type 3; KEGG: sss:SSUSC84_0275 putative DNA-binding protein YP_004399596.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004399597.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lrh:LGG_01933 transporter major facilitator superfamily MFS_1 YP_004399598.1 PFAM: ASCH domain; KEGG: ooe:OEOE_0928 hypothetical protein YP_004399599.1 KEGG: lrf:LAR_0299 aminotransferase; PFAM: Aminotransferase, class I/classII YP_004399600.1 TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: lps:LPST_C2087 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal YP_004399602.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: lcb:LCABL_28000 permease YP_004399603.1 PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: lca:LSEI_2631 transcriptional regulator YP_004399604.1 KEGG: tva:TVAG_198570 viral A-type inclusion protein YP_004399605.1 KEGG: lrl:LC705_02163 aspartate kinase; TIGRFAM: Aspartate kinase domain; PFAM: Aspartate/glutamate/uridylate kinase YP_004399606.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; KEGG: lca:LSEI_2151 homoserine dehydrogenase YP_004399607.1 TIGRFAM: Threonine synthase; KEGG: lrl:LC705_02161 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit YP_004399608.1 TIGRFAM: Homoserine kinase; HAMAP: Homoserine kinase; KEGG: lcz:LCAZH_2109 homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal YP_004399609.1 KEGG: lrl:LC705_01086 hypothetical protein; HAMAP: Ligand-binding-predicted, ACT; PFAM: Amino acid-binding ACT YP_004399610.1 PFAM: Protein of unknown function DUF1212; KEGG: lme:LEUM_1317 hypothetical protein YP_004399611.1 KEGG: lrh:LGG_00632 NADPH:quinone reductase-like Zn-dependent oxidoreductase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; SMART: Polyketide synthase, enoylreductase YP_004399612.1 TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: lps:LPST_C2786 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA YP_004399613.1 PFAM: Putative esterase; KEGG: lps:LPST_C2868 acetylesterase YP_004399614.1 KEGG: shi:Shel_15010 phosphohistidine phosphatase SixA; PFAM: CHAD; SMART: CHAD YP_004399615.1 PFAM: Domain of unknown function DUF536; KEGG: llc:LACR_E7 hypothetical protein YP_004399616.1 PFAM: Amino acid permease domain; KEGG: ooe:OEOE_0388 amino acid transporter YP_004399617.1 KEGG: ooe:OEOE_0387 4-aminobutyrate aminotransferase; PFAM: Aminotransferase class-III YP_004399618.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: lcb:LCABL_29780 endonuclease/exonuclease/phosphatase YP_004399619.1 KEGG: lrf:LAR_0979 putative phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004399620.1 PFAM: Major facilitator superfamily MFS-1; KEGG: mem:Memar_1700 Bcr/CflA subfamily drug resistance transporter YP_004399621.1 PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: clj:CLJU_c32330 putative acetyltransferase YP_004399622.1 KEGG: lbr:LVIS_2251 hypothetical protein YP_004399623.1 PFAM: Nucleoside 2-deoxyribosyltransferase; KEGG: lfe:LAF_0141 hypothetical protein YP_004399624.1 PFAM: Cation/H+ exchanger; KEGG: lbr:LVIS_0437 Kef-type K+ transport system, membrane component YP_004399625.1 KEGG: lps:LPST_C0332 LIVCS family branched chain amino acid:cation symporter; TIGRFAM: Branched-chain amino acid transport system II carrier protein; PFAM: Branched-chain amino acid transport system II carrier protein YP_004399627.1 PFAM: Integrase, catalytic core; KEGG: ssp:SSP1423 transposase YP_004399628.1 TIGRFAM: Autotransporter-associated beta strand repeat; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; KEGG: lbr:LVIS_1991 membrane-associated phospholipid phosphatase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase YP_004399629.1 KEGG: lbr:LVIS_0012 D-alanyl-D-alanine carboxypeptidase YP_004399630.1 KEGG: lps:LPST_C2931 pyruvate oxidase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding YP_004399631.1 KEGG: lpj:JDM1_0175 sucrose PTS, EIIBCA; PFAM: Phosphotransferase system, EIIC YP_004399632.1 PFAM: Major facilitator superfamily MFS-1; KEGG: lbr:LVIS_1976 arabinose efflux permease YP_004399635.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: lrl:LC705_00608 NADPH:quinone reductase-like Zn-dependent oxidoreductase; SMART: Polyketide synthase, enoylreductase YP_004399636.1 KEGG: lam:LA2_01900 phosphate uptake regulator; TIGRFAM: PhoU; PFAM: PhoU YP_004399637.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: lrl:LC705_00960 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004399638.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Phosphate transport system permease protein 1; KEGG: lsl:LSL_0403 phosphate ABC transporter ATP-binding protein; PFAM: ABC transporter-like YP_004399639.1 KEGG: ljo:LJ0791 ABC transporter permease component; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004399640.1 KEGG: lbr:LVIS_0634 ABC-type phosphate transport system, permease component; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component YP_004399641.1 KEGG: lbr:LVIS_1866 ABC-type phosphate transport system, periplasmic component; TIGRFAM: Phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1 YP_004399642.1 KEGG: lbr:LVIS_0631 DNA-binding response regulator; PFAM: Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, C-terminal YP_004399643.1 KEGG: lps:LPST_C0219 hypothetical protein YP_004399644.1 PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: lsa:LSA0894 3-dehydroquinate synthase YP_004399645.1 TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; KEGG: lpj:JDM1_0895 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA YP_004399646.1 KEGG: bpb:bpr_I2335 anthranilate synthase component I TrpE; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal YP_004399647.1 TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: ere:EUBREC_2979 anthranilate/para-aminobenzoate synthase component II, TrpG; PFAM: Glutamine amidotransferase class-I, C-terminal YP_004399648.1 PFAM: ABC-type thiamin-related transport system, permease component 1, predicted; KEGG: lbr:LVIS_1827 ABC-type cobalt transport system, permease component YP_004399649.1 TIGRFAM: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; KEGG: bmq:BMQ_0884 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20 YP_004399652.1 KEGG: lcz:LCAZH_1863 RNA:NAD 2'-phosphotransferase; HAMAP: 2'-phosphotransferase KptA, putative; PFAM: Phosphotransferase KptA/Tpt1 YP_004399653.1 KEGG: lsl:LSL_1703 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1 YP_004399654.1 KEGG: lrf:LAR_1811 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_004399655.1 KEGG: lbr:LVIS_2299 major facilitator superfamily permease; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1 YP_004399656.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: lbr:LVIS_2309 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related YP_004399657.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: lps:LPST_C3007 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related YP_004399658.1 KEGG: lbr:LVIS_2311 RNA-binding protein; PFAM: Single-stranded nucleic acid binding R3H; SMART: Single-stranded nucleic acid binding R3H YP_004399659.1 KEGG: lcz:LCAZH_1970 putative Co/Zn/Cd cation transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein YP_004399660.1 TIGRFAM: Acetoin reductase; KEGG: llm:llmg_0339 acetoin(diacetyl)reductase; PFAM: Short-chain dehydrogenase/reductase SDR YP_004399661.1 manually curated; KEGG: lfe:LAF_1723 hypothetical protein YP_004399662.1 PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: efa:EF0111 oxidoreductase, zinc-binding; SMART: Polyketide synthase, enoylreductase YP_004399663.1 KEGG: lsa:LSA0161 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004399664.1 PFAM: ThiJ/PfpI; KEGG: lcb:LCABL_21140 SA2F01-3 protein YP_004399665.1 TIGRFAM: Glycerate kinase; KEGG: aar:Acear_0799 glycerate kinase; PFAM: Glycerate kinase YP_004399666.1 TIGRFAM: Membrane insertion protein, OxaA/YidC; HAMAP: Membrane protein OxaA, firmicutes; KEGG: lbr:LVIS_2312 preprotein translocase subunit YidC; PFAM: Membrane insertion protein, OxaA/YidC YP_004399667.1 TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: lbr:LVIS_2313 ribonuclease P; PFAM: Ribonuclease P YP_004399668.1 TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: lrf:LAR_1820 50S ribosomal protein L34; PFAM: Ribosomal protein L34 YP_004399669.1 KEGG: lsl:pSF118-20_07 hypothetical protein YP_004399670.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: lsl:pSF118-20_08 putative plasmid partition protein YP_004399671.1 KEGG: lcz:LCAZH_p037 putative resolvase; PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix domain; SMART: Resolvase, N-terminal YP_004399672.1 KEGG: bpf:BpOF4_20069 transcriptional regulator, ArsR family protein; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR YP_004399673.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: sag:SAG1257 cation transporter E1-E2 family ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004399674.1 KEGG: lca:LSEI_0347 transposase; manually curated; PFAM: Integrase, catalytic core YP_004399675.1 TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lca:LSEI_2799 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase YP_004399676.1 PFAM: Integrase, catalytic core; KEGG: lcr:LCRIS_00542 transposase YP_004399677.1 PFAM: Integrase, catalytic core; KEGG: lca:LSEI_0773 transposase YP_004399678.1 PFAM: Transposase IS3/IS911family; KEGG: lcb:LCABL_21370 transposase IS3/IS911 family protein YP_004399679.1 PFAM: Toprim domain; KEGG: lcz:LCAZH_p024 protein TrsI, topoisomerase 1A-like protein; SMART: Toprim domain; DNA topoisomerase, type IA, domain 2 YP_004399680.1 PFAM: MobA/MobL protein; KEGG: lps:LPST_P0018 nickase YP_004399681.1 KEGG: lps:LPST_P0019 hypothetical protein YP_004399682.1 KEGG: lps:LPST_P0020 hypothetical protein YP_004399683.1 KEGG: lcz:LCAZH_p004 putative ATPase YP_004399684.1 KEGG: lcz:LCAZH_p003 hypothetical protein YP_004399685.1 KEGG: lcz:LCAZH_p002 addiction module antitoxin, RelB; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin YP_004399686.1 PFAM: Replication initiator A, N-terminal; KEGG: lsl:pSF118-20_06 putative replication initiation protein