-- dump date 20111121_012711 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001842817.1 184154477 6233574 1..1317 1 NC_010610.1 chromosomal replication initiation protein DnaA 1317 6233574 LAF_0001 Lactobacillus fermentum IFO 3956 chromosomal replication initiation protein DnaA YP_001842817.1 1 D 334390 CDS YP_001842818.1 184154478 6233575 1482..2621 1 NC_010610.1 DNA-directed DNA polymerase III subunit beta 2621 6233575 LAF_0002 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase III subunit beta YP_001842818.1 1482 D 334390 CDS YP_001842819.1 184154479 6233576 2843..3061 1 NC_010610.1 hypothetical protein 3061 6233576 LAF_0003 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842819.1 2843 D 334390 CDS YP_001842820.1 184154480 6233577 3071..4192 1 NC_010610.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4192 recF 6233577 recF Lactobacillus fermentum IFO 3956 recombination protein F YP_001842820.1 3071 D 334390 CDS YP_001842821.1 184154481 6233578 4192..6141 1 NC_010610.1 DNA gyrase subunit B 6141 6233578 LAF_0005 Lactobacillus fermentum IFO 3956 DNA gyrase subunit B YP_001842821.1 4192 D 334390 CDS YP_001842822.1 184154482 6233579 6167..8677 1 NC_010610.1 DNA gyrase subunit A 8677 6233579 LAF_0006 Lactobacillus fermentum IFO 3956 DNA gyrase subunit A YP_001842822.1 6167 D 334390 CDS YP_001842823.1 184154483 6233580 8884..9177 1 NC_010610.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 9177 rpsF 6233580 rpsF Lactobacillus fermentum IFO 3956 30S ribosomal protein S6 YP_001842823.1 8884 D 334390 CDS YP_001842824.1 184154484 6233581 9218..9943 1 NC_010610.1 single-strand binding protein 9943 6233581 LAF_0008 Lactobacillus fermentum IFO 3956 single-strand binding protein YP_001842824.1 9218 D 334390 CDS YP_001842825.1 184154485 6233582 9982..10218 1 NC_010610.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 10218 rpsR 6233582 rpsR Lactobacillus fermentum IFO 3956 30S ribosomal protein S18 YP_001842825.1 9982 D 334390 CDS YP_001842826.1 184154486 6233583 10343..12376 1 NC_010610.1 hypothetical protein 12376 6233583 LAF_0010 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842826.1 10343 D 334390 CDS YP_001842827.1 184154487 6233584 12376..12828 1 NC_010610.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 12828 rplI 6233584 rplI Lactobacillus fermentum IFO 3956 50S ribosomal protein L9 YP_001842827.1 12376 D 334390 CDS YP_001842828.1 184154488 6233585 12873..14276 1 NC_010610.1 replicative DNA helicase 14276 6233585 LAF_0012 Lactobacillus fermentum IFO 3956 replicative DNA helicase YP_001842828.1 12873 D 334390 CDS YP_001842829.1 184154489 6233586 14360..15535 1 NC_010610.1 multidrug transport protein 15535 6233586 LAF_0013 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001842829.1 14360 D 334390 CDS YP_001842830.1 184154490 6233587 15547..15879 1 NC_010610.1 hypothetical protein 15879 6233587 LAF_0014 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842830.1 15547 D 334390 CDS YP_001842831.1 184154491 6232382 16335..17042 1 NC_010610.1 two-component response regulator 17042 6232382 LAF_0015 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001842831.1 16335 D 334390 CDS YP_001842832.1 184154492 6233589 17054..18913 1 NC_010610.1 two-component sensor histidine kinase 18913 6233589 LAF_0016 Lactobacillus fermentum IFO 3956 two-component sensor histidine kinase YP_001842832.1 17054 D 334390 CDS YP_001842833.1 184154493 6233590 18897..20195 1 NC_010610.1 hypothetical protein 20195 6233590 LAF_0017 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842833.1 18897 D 334390 CDS YP_001842834.1 184154494 6233591 20197..20997 1 NC_010610.1 hypothetical protein 20997 6233591 LAF_0018 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842834.1 20197 D 334390 CDS YP_001842835.1 184154495 6233592 21012..21827 1 NC_010610.1 hypothetical protein 21827 6233592 LAF_0019 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842835.1 21012 D 334390 CDS YP_001842836.1 184154496 6233593 21902..23173 1 NC_010610.1 serine protease 23173 6233593 LAF_0020 Lactobacillus fermentum IFO 3956 serine protease YP_001842836.1 21902 D 334390 CDS YP_001842837.1 184154497 6233594 23681..24160 1 NC_010610.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 24160 6233594 LAF_0021 Lactobacillus fermentum IFO 3956 rRNA large subunit methyltransferase YP_001842837.1 23681 D 334390 CDS YP_001842838.1 184154498 6233595 24375..24800 1 NC_010610.1 hypothetical protein 24800 6233595 LAF_0022 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842838.1 24375 D 334390 CDS YP_001842839.1 184154499 6233596 24806..25741 1 NC_010610.1 transcriptional regulator 25741 6233596 LAF_0023 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001842839.1 24806 D 334390 CDS YP_001842840.1 184154500 6233597 26121..27464 1 NC_010610.1 sugar transport protein 27464 6233597 LAF_0024 Lactobacillus fermentum IFO 3956 sugar transport protein YP_001842840.1 26121 D 334390 CDS YP_001842841.1 184154501 6233598 27477..29723 1 NC_010610.1 maltose phosphorylase 29723 6233598 LAF_0025 Lactobacillus fermentum IFO 3956 maltose phosphorylase YP_001842841.1 27477 D 334390 CDS YP_001842842.1 184154502 6233599 29870..30538 1 NC_010610.1 beta-phosphoglucomutase 30538 6233599 LAF_0026 Lactobacillus fermentum IFO 3956 beta-phosphoglucomutase YP_001842842.1 29870 D 334390 CDS YP_001842843.1 184154503 6233600 complement(30621..31286) 1 NC_010610.1 hypothetical protein 31286 6233600 LAF_0027 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842843.1 30621 R 334390 CDS YP_001842844.1 184154504 6233601 complement(31337..32314) 1 NC_010610.1 penicillin acylase 32314 6233601 LAF_0028 Lactobacillus fermentum IFO 3956 penicillin acylase YP_001842844.1 31337 R 334390 CDS YP_001842845.1 184154505 6233602 complement(32369..33304) 1 NC_010610.1 cell surface hydrolase 33304 6233602 LAF_0029 Lactobacillus fermentum IFO 3956 cell surface hydrolase YP_001842845.1 32369 R 334390 CDS YP_001842846.1 184154506 6233603 complement(33607..34599) 1 NC_010610.1 D-lactate dehydrogenase 34599 6233603 LAF_0030 Lactobacillus fermentum IFO 3956 D-lactate dehydrogenase YP_001842846.1 33607 R 334390 CDS YP_001842847.1 184154507 6233604 complement(34615..35799) 1 NC_010610.1 aromatic amino acid aminotransferase 35799 6233604 LAF_0031 Lactobacillus fermentum IFO 3956 aromatic amino acid aminotransferase YP_001842847.1 34615 R 334390 CDS YP_001842848.1 184154508 6233605 36148..36378 1 NC_010610.1 hypothetical protein 36378 6233605 LAF_0032 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842848.1 36148 D 334390 CDS YP_001842849.1 184154509 6233606 36473..38566 1 NC_010610.1 ATP-dependent Clp protease ATP-binding subunit 38566 6233606 LAF_0033 Lactobacillus fermentum IFO 3956 ATP-dependent Clp protease ATP-binding subunit YP_001842849.1 36473 D 334390 CDS YP_001842850.1 184154510 6233607 complement(38599..38823) 1 NC_010610.1 hypothetical protein 38823 6233607 LAF_0034 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842850.1 38599 R 334390 CDS YP_001842851.1 184154511 6233608 38867..40327 1 NC_010610.1 cardiolipin synthase 40327 6233608 LAF_0035 Lactobacillus fermentum IFO 3956 cardiolipin synthase YP_001842851.1 38867 D 334390 CDS YP_001842852.1 184154512 6233609 40810..44547 1 NC_010610.1 ATP-dependent nuclease subunit B 44547 6233609 LAF_0036 Lactobacillus fermentum IFO 3956 ATP-dependent nuclease subunit B YP_001842852.1 40810 D 334390 CDS YP_001842853.1 184154513 6233610 44554..48567 1 NC_010610.1 ATP-dependent nuclease subunit A 48567 6233610 LAF_0037 Lactobacillus fermentum IFO 3956 ATP-dependent nuclease subunit A YP_001842853.1 44554 D 334390 CDS YP_001842854.1 184154514 6233611 48567..49430 1 NC_010610.1 oxidoreductase 49430 6233611 LAF_0038 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001842854.1 48567 D 334390 CDS YP_001842855.1 184154515 6233612 49669..51294 1 NC_010610.1 glycerophosphodiester phosphodiesterase 51294 6233612 LAF_0039 Lactobacillus fermentum IFO 3956 glycerophosphodiester phosphodiesterase YP_001842855.1 49669 D 334390 CDS YP_001842856.1 184154516 6233613 complement(51588..51944) 1 NC_010610.1 arsenate reductase 51944 6233613 LAF_0040 Lactobacillus fermentum IFO 3956 arsenate reductase YP_001842856.1 51588 R 334390 CDS YP_001842857.1 184154517 6233614 complement(51982..53097) 1 NC_010610.1 ABC transporter permease 53097 6233614 LAF_0041 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001842857.1 51982 R 334390 CDS YP_001842858.1 184154518 6233615 complement(53090..53821) 1 NC_010610.1 ABC transporter ATP-binding protein 53821 6233615 LAF_0042 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001842858.1 53090 R 334390 CDS YP_001842859.1 184154519 6233616 53948..54514 1 NC_010610.1 hypothetical protein 54514 6233616 LAF_0043 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842859.1 53948 D 334390 CDS YP_001842860.1 184154520 6233617 55767..57056 1 NC_010610.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 57056 6233617 LAF_0044 Lactobacillus fermentum IFO 3956 adenylosuccinate synthetase YP_001842860.1 55767 D 334390 CDS YP_001842861.1 184154521 6233618 57383..58738 1 NC_010610.1 succinic semialdehyde dehydrogenase 58738 6233618 LAF_0045 Lactobacillus fermentum IFO 3956 succinic semialdehyde dehydrogenase YP_001842861.1 57383 D 334390 CDS YP_001842862.1 184154522 6233619 59048..59587 1 NC_010610.1 pyrimidine operon regulator 59587 6233619 LAF_0046 Lactobacillus fermentum IFO 3956 pyrimidine operon regulator YP_001842862.1 59048 D 334390 CDS YP_001842863.1 184154523 6233620 59706..60437 1 NC_010610.1 orotidine-5'-phosphate decarboxylase 60437 6233620 LAF_0047 Lactobacillus fermentum IFO 3956 orotidine-5'-phosphate decarboxylase YP_001842863.1 59706 D 334390 CDS YP_001842864.1 184154524 6233621 60437..61063 1 NC_010610.1 orotate phosphoribosyltransferase 61063 6233621 LAF_0048 Lactobacillus fermentum IFO 3956 orotate phosphoribosyltransferase YP_001842864.1 60437 D 334390 CDS YP_001842865.1 184154525 6233622 complement(61624..62049) 1 NC_010610.1 transposase 62049 6233622 LAF_0049 Lactobacillus fermentum IFO 3956 transposase YP_001842865.1 61624 R 334390 CDS YP_001842866.1 184154526 6233623 62125..63411 1 NC_010610.1 transposase 63411 6233623 LAF_0050 Lactobacillus fermentum IFO 3956 transposase YP_001842866.1 62125 D 334390 CDS YP_001842867.1 184154527 6233624 64286..65824 1 NC_010610.1 poly(glycerol-phosphate) alpha-glucosyltransferase 65824 6233624 LAF_0051 Lactobacillus fermentum IFO 3956 poly(glycerol-phosphate) alpha-glucosyltransferase YP_001842867.1 64286 D 334390 CDS YP_001842868.1 184154528 6233625 65824..67320 1 NC_010610.1 poly(glycerol-phosphate) alpha-glucosyltransferase 67320 6233625 LAF_0052 Lactobacillus fermentum IFO 3956 poly(glycerol-phosphate) alpha-glucosyltransferase YP_001842868.1 65824 D 334390 CDS YP_001842869.1 184154529 6233626 67730..68572 1 NC_010610.1 hypothetical protein 68572 6233626 LAF_0053 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842869.1 67730 D 334390 CDS YP_001842870.1 184154530 6233627 68598..69662 1 NC_010610.1 ABC transporter ATP-binding protein 69662 6233627 LAF_0054 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001842870.1 68598 D 334390 CDS YP_001842871.1 184154531 6233628 69655..70356 1 NC_010610.1 ABC transporter permease 70356 6233628 LAF_0055 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001842871.1 69655 D 334390 CDS YP_001842872.1 184154532 6233629 70482..71630 1 NC_010610.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 71630 6233629 LAF_0056 Lactobacillus fermentum IFO 3956 succinyl-diaminopimelate desuccinylase YP_001842872.1 70482 D 334390 CDS YP_001842873.1 184154533 6233630 complement(71930..73537) 1 NC_010610.1 RNA methyltransferase 73537 6233630 LAF_0057 Lactobacillus fermentum IFO 3956 RNA methyltransferase YP_001842873.1 71930 R 334390 CDS YP_001842874.1 184154534 6233631 73909..74346 1 NC_010610.1 transposase 74346 6233631 LAF_0058 Lactobacillus fermentum IFO 3956 transposase YP_001842874.1 73909 D 334390 CDS YP_001842875.1 184154535 6232158 74343..75506 1 NC_010610.1 transposase 75506 6232158 LAF_0059 Lactobacillus fermentum IFO 3956 transposase YP_001842875.1 74343 D 334390 CDS YP_001842876.1 184154536 6232159 complement(76377..77669) 1 NC_010610.1 D-alanyl transfer protein 77669 6232159 LAF_0060 Lactobacillus fermentum IFO 3956 D-alanyl transfer protein YP_001842876.1 76377 R 334390 CDS YP_001842877.1 184154537 6232160 complement(77683..77934) 1 NC_010610.1 D-alanyl carrier protein 77934 6232160 LAF_0061 Lactobacillus fermentum IFO 3956 D-alanyl carrier protein YP_001842877.1 77683 R 334390 CDS YP_001842878.1 184154538 6232161 complement(77949..79175) 1 NC_010610.1 D-alanyl transfer protein 79175 6232161 LAF_0062 Lactobacillus fermentum IFO 3956 D-alanyl transfer protein YP_001842878.1 77949 R 334390 CDS YP_001842879.1 184154539 6232162 complement(79175..80704) 1 NC_010610.1 D-alanine-activating enzyme 80704 6232162 LAF_0063 Lactobacillus fermentum IFO 3956 D-alanine-activating enzyme YP_001842879.1 79175 R 334390 CDS YP_001842880.1 184154540 6232163 81076..82209 1 NC_010610.1 exonuclease SbcD 82209 6232163 LAF_0064 Lactobacillus fermentum IFO 3956 exonuclease SbcD YP_001842880.1 81076 D 334390 CDS YP_001842881.1 184154541 6232164 82206..85310 1 NC_010610.1 exonuclease SbcC 85310 6232164 LAF_0065 Lactobacillus fermentum IFO 3956 exonuclease SbcC YP_001842881.1 82206 D 334390 CDS YP_001842882.1 184154542 6232165 85598..86896 1 NC_010610.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 86896 6232165 LAF_0066 Lactobacillus fermentum IFO 3956 seryl-tRNA synthetase YP_001842882.1 85598 D 334390 CDS YP_001842883.1 184154543 6232383 complement(87382..88395) 1 NC_010610.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 88395 6232383 LAF_0067 Lactobacillus fermentum IFO 3956 tryptophanyl-tRNA synthetase II YP_001842883.1 87382 R 334390 CDS YP_001842884.1 184154544 6232167 complement(88653..89906) 1 NC_010610.1 tyrosyl-tRNA synthase 89906 6232167 LAF_0068 Lactobacillus fermentum IFO 3956 tyrosyl-tRNA synthase YP_001842884.1 88653 R 334390 CDS YP_001842885.1 184154545 6232168 90572..91828 1 NC_010610.1 glutamine ABC transporter permease 91828 6232168 LAF_0069 Lactobacillus fermentum IFO 3956 glutamine ABC transporter permease YP_001842885.1 90572 D 334390 CDS YP_001842886.1 184154546 6232169 91832..92575 1 NC_010610.1 glutamine ABC transporter ATP-binding protein 92575 6232169 LAF_0070 Lactobacillus fermentum IFO 3956 glutamine ABC transporter ATP-binding protein YP_001842886.1 91832 D 334390 CDS YP_001842887.1 184154547 6232170 93082..94455 1 NC_010610.1 amino acid transporter 94455 6232170 LAF_0071 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001842887.1 93082 D 334390 CDS YP_001842888.1 184154548 6232171 complement(94779..96029) 1 NC_010610.1 transposase 96029 6232171 LAF_0072 Lactobacillus fermentum IFO 3956 transposase YP_001842888.1 94779 R 334390 CDS YP_001842889.1 184154549 6232172 96108..96560 1 NC_010610.1 transposase 96560 6232172 LAF_0073 Lactobacillus fermentum IFO 3956 transposase YP_001842889.1 96108 D 334390 CDS YP_001842890.1 184154550 6232173 97271..98470 1 NC_010610.1 nucleoside transport protein 98470 6232173 LAF_0074 Lactobacillus fermentum IFO 3956 nucleoside transport protein YP_001842890.1 97271 D 334390 CDS YP_001842891.1 184154551 6232174 99815..100552 1 NC_010610.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 100552 gidB 6232174 gidB Lactobacillus fermentum IFO 3956 16S rRNA methyltransferase GidB YP_001842891.1 99815 D 334390 CDS YP_001842892.1 184154552 6231779 100571..101506 1 NC_010610.1 chromosome partitioning protein ParB 101506 6231779 LAF_0076 Lactobacillus fermentum IFO 3956 chromosome partitioning protein ParB YP_001842892.1 100571 D 334390 CDS YP_001842893.1 184154553 6232595 101490..102353 1 NC_010610.1 chromosome partitioning protein ParB 102353 6232595 LAF_0077 Lactobacillus fermentum IFO 3956 chromosome partitioning protein ParB YP_001842893.1 101490 D 334390 CDS YP_001842894.1 184154554 6232596 102366..102566 1 NC_010610.1 hypothetical protein 102566 6232596 LAF_0078 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842894.1 102366 D 334390 CDS YP_001842895.1 184154555 6232597 102582..103679 1 NC_010610.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 103679 6232597 LAF_0079 Lactobacillus fermentum IFO 3956 GTP-dependent nucleic acid-binding protein EngD YP_001842895.1 102582 D 334390 CDS YP_001842896.1 184154556 6232734 103713..104486 1 NC_010610.1 hypothetical protein 104486 6232734 LAF_0080 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842896.1 103713 D 334390 CDS YP_001842897.1 184154557 6231940 104757..105899 1 NC_010610.1 inosine-5'-monophosphate dehydrogenase 105899 6231940 LAF_0081 Lactobacillus fermentum IFO 3956 inosine-5'-monophosphate dehydrogenase YP_001842897.1 104757 D 334390 CDS YP_001842898.1 184154558 6231941 complement(106246..107262) 1 NC_010610.1 transposase 107262 6231941 LAF_0082 Lactobacillus fermentum IFO 3956 transposase YP_001842898.1 106246 R 334390 CDS YP_001842899.1 184154559 6232598 107553..108653 1 NC_010610.1 transposase 108653 6232598 LAF_0083 Lactobacillus fermentum IFO 3956 transposase YP_001842899.1 107553 D 334390 CDS YP_001842900.1 184154560 6232599 108801..109802 1 NC_010610.1 hypothetical protein 109802 6232599 LAF_0084 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842900.1 108801 D 334390 CDS YP_001842901.1 184154561 6232175 109802..110572 1 NC_010610.1 hypothetical protein 110572 6232175 LAF_0085 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842901.1 109802 D 334390 CDS YP_001842902.1 184154562 6232176 110589..111332 1 NC_010610.1 exopolysaccharide biosynthesis protein 111332 6232176 LAF_0086 Lactobacillus fermentum IFO 3956 exopolysaccharide biosynthesis protein YP_001842902.1 110589 D 334390 CDS YP_001842903.1 184154563 6232177 111353..112123 1 NC_010610.1 exopolysaccharide biosynthesis protein 112123 6232177 LAF_0087 Lactobacillus fermentum IFO 3956 exopolysaccharide biosynthesis protein YP_001842903.1 111353 D 334390 CDS YP_001842904.1 184154564 6232178 112240..112791 1 NC_010610.1 capsular polysaccharide synthesis protein 112791 6232178 LAF_0088 Lactobacillus fermentum IFO 3956 capsular polysaccharide synthesis protein YP_001842904.1 112240 D 334390 CDS YP_001842905.1 184154565 6232179 112815..113669 1 NC_010610.1 glycosyltransferase 113669 6232179 LAF_0089 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001842905.1 112815 D 334390 CDS YP_001842906.1 184154566 6232180 113686..114498 1 NC_010610.1 hypothetical protein 114498 6232180 LAF_0090 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842906.1 113686 D 334390 CDS YP_001842907.1 184154567 6232181 114518..115753 1 NC_010610.1 hypothetical protein 115753 6232181 LAF_0091 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842907.1 114518 D 334390 CDS YP_001842908.1 184154568 6232182 115750..116751 1 NC_010610.1 hypothetical protein 116751 6232182 LAF_0092 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842908.1 115750 D 334390 CDS YP_001842909.1 184154569 6232183 116768..117871 1 NC_010610.1 hypothetical protein 117871 6232183 LAF_0093 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842909.1 116768 D 334390 CDS YP_001842910.1 184154570 6232184 117881..118753 1 NC_010610.1 glycosyltransferases 118753 6232184 LAF_0094 Lactobacillus fermentum IFO 3956 glycosyltransferases YP_001842910.1 117881 D 334390 CDS YP_001842911.1 184154571 6232185 118758..120266 1 NC_010610.1 flippase 120266 6232185 LAF_0095 Lactobacillus fermentum IFO 3956 flippase YP_001842911.1 118758 D 334390 CDS YP_001842912.1 184154572 6232186 120285..121154 1 NC_010610.1 glucose-1-phosphate thymidylyltransferase 121154 6232186 LAF_0096 Lactobacillus fermentum IFO 3956 glucose-1-phosphate thymidylyltransferase YP_001842912.1 120285 D 334390 CDS YP_001842913.1 184154573 6232187 121158..121739 1 NC_010610.1 dTDP-4-dehydrorhamnose 3,5-epimerase 121739 6232187 LAF_0097 Lactobacillus fermentum IFO 3956 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001842913.1 121158 D 334390 CDS YP_001842914.1 184154574 6232188 121750..122781 1 NC_010610.1 dTDP-glucose 4,6-dehydratase 122781 6232188 LAF_0098 Lactobacillus fermentum IFO 3956 dTDP-glucose 4,6-dehydratase YP_001842914.1 121750 D 334390 CDS YP_001842915.1 184154575 6232189 122844..123701 1 NC_010610.1 dTDP-4-dehydrorhamnose reductase 123701 6232189 LAF_0099 Lactobacillus fermentum IFO 3956 dTDP-4-dehydrorhamnose reductase YP_001842915.1 122844 D 334390 CDS YP_001842916.1 184154576 6232190 124005..125225 1 NC_010610.1 transposase 125225 6232190 LAF_0100 Lactobacillus fermentum IFO 3956 transposase YP_001842916.1 124005 D 334390 CDS YP_001842917.1 184154577 6232191 complement(126283..127491) 1 NC_010610.1 hypothetical protein 127491 6232191 LAF_0101 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842917.1 126283 R 334390 CDS YP_001842918.1 184154578 6232192 127627..127902 1 NC_010610.1 hypothetical protein 127902 6232192 LAF_0102 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842918.1 127627 D 334390 CDS YP_001842919.1 184154579 6232193 127906..128106 1 NC_010610.1 hypothetical protein 128106 6232193 LAF_0103 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842919.1 127906 D 334390 CDS YP_001842920.1 184154580 6232194 128347..129072 1 NC_010610.1 hypothetical protein 129072 6232194 LAF_0104 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842920.1 128347 D 334390 CDS YP_001842921.1 184154581 6232195 complement(129815..130177) 1 NC_010610.1 hypothetical protein 130177 6232195 LAF_0105 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842921.1 129815 R 334390 CDS YP_001842922.1 184154582 6232196 complement(130825..131331) 1 NC_010610.1 hypothetical protein 131331 6232196 LAF_0106 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842922.1 130825 R 334390 CDS YP_001842923.1 184154583 6232197 131528..132217 1 NC_010610.1 two-component response regulator 132217 6232197 LAF_0107 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001842923.1 131528 D 334390 CDS YP_001842924.1 184154584 6232198 132415..133557 1 NC_010610.1 two-component system histidine kinase 133557 6232198 LAF_0108 Lactobacillus fermentum IFO 3956 two-component system histidine kinase YP_001842924.1 132415 D 334390 CDS YP_001842925.1 184154585 6232600 133617..134852 1 NC_010610.1 D-alanyl-D-alanine 134852 6232600 LAF_0109 Lactobacillus fermentum IFO 3956 D-alanyl-D-alanine YP_001842925.1 133617 D 334390 CDS YP_001842926.1 184154586 6232601 135068..135928 1 NC_010610.1 branched-chain amino acid transporter 135928 6232601 LAF_0110 Lactobacillus fermentum IFO 3956 branched-chain amino acid transporter YP_001842926.1 135068 D 334390 CDS YP_001842927.1 184154587 6232266 135983..136357 1 NC_010610.1 hypothetical protein 136357 6232266 LAF_0111 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842927.1 135983 D 334390 CDS YP_001842928.1 184154588 6232943 136470..136730 1 NC_010610.1 hypothetical protein 136730 6232943 LAF_0112 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842928.1 136470 D 334390 CDS YP_001842929.1 184154589 6232944 136730..137077 1 NC_010610.1 hypothetical protein 137077 6232944 LAF_0113 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842929.1 136730 D 334390 CDS YP_001842930.1 184154590 6232945 137087..137635 1 NC_010610.1 hypothetical protein 137635 6232945 LAF_0114 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842930.1 137087 D 334390 CDS YP_001842931.1 184154591 6232946 complement(137911..139098) 1 NC_010610.1 cyclopropane-fatty-acyl-phospholipid synthase 139098 6232946 LAF_0115 Lactobacillus fermentum IFO 3956 cyclopropane-fatty-acyl-phospholipid synthase YP_001842931.1 137911 R 334390 CDS YP_001842932.1 184154592 6232947 139441..140481 1 NC_010610.1 hypothetical protein 140481 6232947 LAF_0116 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842932.1 139441 D 334390 CDS YP_001842933.1 184154593 6232948 140569..142230 1 NC_010610.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 142230 6232948 LAF_0117 Lactobacillus fermentum IFO 3956 formate--tetrahydrofolate ligase YP_001842933.1 140569 D 334390 CDS YP_001842934.1 184154594 6232949 142517..143002 1 NC_010610.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 143002 6232949 LAF_0118 Lactobacillus fermentum IFO 3956 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001842934.1 142517 D 334390 CDS YP_001842935.1 184154595 6232950 142986..144125 1 NC_010610.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 144125 6232950 LAF_0119 Lactobacillus fermentum IFO 3956 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001842935.1 142986 D 334390 CDS YP_001842936.1 184154596 6232951 144144..145439 1 NC_010610.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 145439 6232951 LAF_0120 Lactobacillus fermentum IFO 3956 adenylosuccinate lyase YP_001842936.1 144144 D 334390 CDS YP_001842937.1 184154597 6232952 145782..146822 1 NC_010610.1 hypothetical protein 146822 6232952 LAF_0121 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842937.1 145782 D 334390 CDS YP_001842938.1 184154598 6232953 146834..148384 1 NC_010610.1 hypothetical protein 148384 6232953 LAF_0122 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842938.1 146834 D 334390 CDS YP_001842939.1 184154599 6232954 complement(148685..148900) 1 NC_010610.1 hypothetical protein 148900 6232954 LAF_0123 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842939.1 148685 R 334390 CDS YP_001842940.1 184154600 6232955 149463..150185 1 NC_010610.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 150185 6232955 LAF_0124 Lactobacillus fermentum IFO 3956 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001842940.1 149463 D 334390 CDS YP_001842941.1 184154601 6232956 150188..150430 1 NC_010610.1 phosphoribosylformylglycinamidine synthase 150430 6232956 LAF_0125 Lactobacillus fermentum IFO 3956 phosphoribosylformylglycinamidine synthase YP_001842941.1 150188 D 334390 CDS YP_001842942.1 184154602 6232957 150431..151111 1 NC_010610.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 151111 6232957 LAF_0126 Lactobacillus fermentum IFO 3956 phosphoribosylformylglycinamidine synthase I YP_001842942.1 150431 D 334390 CDS YP_001842943.1 184154603 6232958 151115..153340 1 NC_010610.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 153340 6232958 LAF_0127 Lactobacillus fermentum IFO 3956 phosphoribosylformylglycinamidine synthase II YP_001842943.1 151115 D 334390 CDS YP_001842944.1 184154604 6232959 153316..154779 1 NC_010610.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 154779 6232959 LAF_0128 Lactobacillus fermentum IFO 3956 amidophosphoribosyltransferase YP_001842944.1 153316 D 334390 CDS YP_001842945.1 184154605 6232602 154779..155816 1 NC_010610.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 155816 6232602 LAF_0129 Lactobacillus fermentum IFO 3956 phosphoribosylaminoimidazole synthetase YP_001842945.1 154779 D 334390 CDS YP_001842946.1 184154606 6232603 155825..156406 1 NC_010610.1 phosphoribosylglycinamide formyltransferase 156406 6232603 LAF_0130 Lactobacillus fermentum IFO 3956 phosphoribosylglycinamide formyltransferase YP_001842946.1 155825 D 334390 CDS YP_001842947.1 184154607 6232604 156390..157943 1 NC_010610.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 157943 purH 6232604 purH Lactobacillus fermentum IFO 3956 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001842947.1 156390 D 334390 CDS YP_001842948.1 184154608 6232605 158217..159470 1 NC_010610.1 phosphoribosylamine-glycine ligase 159470 6232605 LAF_0132 Lactobacillus fermentum IFO 3956 phosphoribosylamine-glycine ligase YP_001842948.1 158217 D 334390 CDS YP_001842949.1 184154609 6232606 complement(159716..160879) 1 NC_010610.1 transposase 160879 6232606 LAF_0133 Lactobacillus fermentum IFO 3956 transposase YP_001842949.1 159716 R 334390 CDS YP_001842950.1 184154610 6232607 complement(160876..161313) 1 NC_010610.1 transposase 161313 6232607 LAF_0134 Lactobacillus fermentum IFO 3956 transposase YP_001842950.1 160876 R 334390 CDS YP_001842951.1 184154611 6232608 161528..162223 1 NC_010610.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 162223 gpmA 6232608 gpmA Lactobacillus fermentum IFO 3956 phosphoglyceromutase YP_001842951.1 161528 D 334390 CDS YP_001842952.1 184154612 6232609 162347..163525 1 NC_010610.1 aminotransferase 163525 6232609 LAF_0136 Lactobacillus fermentum IFO 3956 aminotransferase YP_001842952.1 162347 D 334390 CDS YP_001842953.1 184154613 6233410 163638..164642 1 NC_010610.1 hypothetical protein 164642 6233410 LAF_0137 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842953.1 163638 D 334390 CDS YP_001842954.1 184154614 6233411 165128..165499 1 NC_010610.1 hypothetical protein 165499 6233411 LAF_0138 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842954.1 165128 D 334390 CDS YP_001842955.1 184154615 6233412 165513..165821 1 NC_010610.1 hypothetical protein 165821 6233412 LAF_0139 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842955.1 165513 D 334390 CDS YP_001842956.1 184154616 6233413 165821..167752 1 NC_010610.1 cation-transporting ATPase 167752 6233413 LAF_0140 Lactobacillus fermentum IFO 3956 cation-transporting ATPase YP_001842956.1 165821 D 334390 CDS YP_001842957.1 184154617 6233414 complement(168349..168825) 1 NC_010610.1 hypothetical protein 168825 6233414 LAF_0141 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842957.1 168349 R 334390 CDS YP_001842958.1 184154618 6232384 174750..175406 1 NC_010610.1 nitroreductase 175406 6232384 LAF_0142 Lactobacillus fermentum IFO 3956 nitroreductase YP_001842958.1 174750 D 334390 CDS YP_001842959.1 184154619 6233416 175412..175972 1 NC_010610.1 hydrolase 175972 6233416 LAF_0143 Lactobacillus fermentum IFO 3956 hydrolase YP_001842959.1 175412 D 334390 CDS YP_001842960.1 184154620 6233417 175959..176636 1 NC_010610.1 hypothetical protein 176636 6233417 LAF_0144 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842960.1 175959 D 334390 CDS YP_001842961.1 184154621 6233418 177168..177476 1 NC_010610.1 hypothetical protein 177476 6233418 LAF_0145 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842961.1 177168 D 334390 CDS YP_001842962.1 184154622 6233419 178958..179542 1 NC_010610.1 transport protein 179542 6233419 LAF_0146 Lactobacillus fermentum IFO 3956 transport protein YP_001842962.1 178958 D 334390 CDS YP_001842963.1 184154623 6233420 complement(179594..179815) 1 NC_010610.1 hypothetical protein 179815 6233420 LAF_0147 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842963.1 179594 R 334390 CDS YP_001842964.1 184154624 6233421 179983..180321 1 NC_010610.1 hypothetical protein 180321 6233421 LAF_0148 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842964.1 179983 D 334390 CDS YP_001842965.1 184154625 6233422 complement(181934..183457) 1 NC_010610.1 hypothetical protein 183457 6233422 LAF_0149 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842965.1 181934 R 334390 CDS YP_001842966.1 184154626 6233423 183629..185494 1 NC_010610.1 hypothetical protein 185494 6233423 LAF_0150 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842966.1 183629 D 334390 CDS YP_001842967.1 184154627 6233424 185484..186275 1 NC_010610.1 hypothetical protein 186275 6233424 LAF_0151 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842967.1 185484 D 334390 CDS YP_001842968.1 184154628 6233425 186290..187168 1 NC_010610.1 iron ABC transporter substrate-binding protein 187168 6233425 LAF_0152 Lactobacillus fermentum IFO 3956 iron ABC transporter substrate-binding protein YP_001842968.1 186290 D 334390 CDS YP_001842969.1 184154629 6233426 187170..188096 1 NC_010610.1 iron ABC transporter permease 188096 6233426 LAF_0153 Lactobacillus fermentum IFO 3956 iron ABC transporter permease YP_001842969.1 187170 D 334390 CDS YP_001842970.1 184154630 6233427 188080..188850 1 NC_010610.1 iron ABC transporter ATP-binding protein 188850 6233427 LAF_0154 Lactobacillus fermentum IFO 3956 iron ABC transporter ATP-binding protein YP_001842970.1 188080 D 334390 CDS YP_001842971.1 184154631 6233428 complement(189087..190391) 1 NC_010610.1 transporter protein 190391 6233428 LAF_0155 Lactobacillus fermentum IFO 3956 transporter protein YP_001842971.1 189087 R 334390 CDS YP_001842972.1 184154632 6233429 191023..191580 1 NC_010610.1 hypothetical protein 191580 6233429 LAF_0156 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842972.1 191023 D 334390 CDS YP_001842973.1 184154633 6233430 191513..192139 1 NC_010610.1 hypothetical protein 192139 6233430 LAF_0157 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842973.1 191513 D 334390 CDS YP_001842974.1 184154634 6233431 192271..193110 1 NC_010610.1 exodeoxyribonuclease 193110 6233431 LAF_0158 Lactobacillus fermentum IFO 3956 exodeoxyribonuclease YP_001842974.1 192271 D 334390 CDS YP_001842975.1 184154635 6232378 198915..199886 1 NC_010610.1 phosphoglycerate dehydrogenase 199886 6232378 LAF_0159 Lactobacillus fermentum IFO 3956 phosphoglycerate dehydrogenase YP_001842975.1 198915 D 334390 CDS YP_001842976.1 184154636 6233433 203131..204402 1 NC_010610.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 204402 6233433 LAF_0160 Lactobacillus fermentum IFO 3956 allantoate amidohydrolase YP_001842976.1 203131 D 334390 CDS YP_001842977.1 184154637 6233434 complement(204351..205337) 1 NC_010610.1 transposase 205337 6233434 LAF_0161 Lactobacillus fermentum IFO 3956 transposase YP_001842977.1 204351 R 334390 CDS YP_001842978.1 184154638 6233435 205460..205990 1 NC_010610.1 hypothetical protein 205990 6233435 LAF_0162 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842978.1 205460 D 334390 CDS YP_001842979.1 184154639 6233436 206275..207339 1 NC_010610.1 ureidoglycolate dehydrogenase 207339 6233436 LAF_0163 Lactobacillus fermentum IFO 3956 ureidoglycolate dehydrogenase YP_001842979.1 206275 D 334390 CDS YP_001842980.1 184154640 6233437 207410..207592 1 NC_010610.1 hypothetical protein 207592 6233437 LAF_0164 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842980.1 207410 D 334390 CDS YP_001842981.1 184154641 6233438 207703..208641 1 NC_010610.1 Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 208641 rihA 6233438 rihA Lactobacillus fermentum IFO 3956 ribonucleoside hydrolase 1 YP_001842981.1 207703 D 334390 CDS YP_001842982.1 184154642 6233439 208718..209365 1 NC_010610.1 nitroreductase 209365 6233439 LAF_0166 Lactobacillus fermentum IFO 3956 nitroreductase YP_001842982.1 208718 D 334390 CDS YP_001842983.1 184154643 6233440 209375..210106 1 NC_010610.1 hypothetical protein 210106 6233440 LAF_0167 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842983.1 209375 D 334390 CDS YP_001842984.1 184154644 6233441 210075..210431 1 NC_010610.1 hypothetical protein 210431 6233441 LAF_0168 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842984.1 210075 D 334390 CDS YP_001842985.1 184154645 6233442 210556..211596 1 NC_010610.1 alcohol dehydrogenase 211596 6233442 LAF_0169 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001842985.1 210556 D 334390 CDS YP_001842986.1 184154646 6233443 complement(211799..214324) 1 NC_010610.1 aminopeptidase N 214324 6233443 LAF_0170 Lactobacillus fermentum IFO 3956 aminopeptidase N YP_001842986.1 211799 R 334390 CDS YP_001842987.1 184154647 6233444 complement(214586..214951) 1 NC_010610.1 oxidoreductase 214951 6233444 LAF_0171 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001842987.1 214586 R 334390 CDS YP_001842988.1 184154648 6233445 215058..215969 1 NC_010610.1 transcription regulator 215969 6233445 LAF_0172 Lactobacillus fermentum IFO 3956 transcription regulator YP_001842988.1 215058 D 334390 CDS YP_001842989.1 184154649 6233446 215999..216544 1 NC_010610.1 hypothetical protein 216544 6233446 LAF_0173 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842989.1 215999 D 334390 CDS YP_001842990.1 184154650 6233447 216612..217376 1 NC_010610.1 nitroreductase 217376 6233447 LAF_0174 Lactobacillus fermentum IFO 3956 nitroreductase YP_001842990.1 216612 D 334390 CDS YP_001842991.1 184154651 6232385 complement(217742..218194) 1 NC_010610.1 transposase 218194 6232385 LAF_0175 Lactobacillus fermentum IFO 3956 transposase YP_001842991.1 217742 R 334390 CDS YP_001842992.1 184154652 6233449 218273..219523 1 NC_010610.1 transposase 219523 6233449 LAF_0176 Lactobacillus fermentum IFO 3956 transposase YP_001842992.1 218273 D 334390 CDS YP_001842993.1 184154653 6233450 219712..220560 1 NC_010610.1 amino acid ABC transporter substrate-binding protein 220560 6233450 LAF_0177 Lactobacillus fermentum IFO 3956 amino acid ABC transporter substrate-binding protein YP_001842993.1 219712 D 334390 CDS YP_001842994.1 184154654 6233451 220703..221866 1 NC_010610.1 Na-H antiporter 221866 6233451 LAF_0178 Lactobacillus fermentum IFO 3956 Na-H antiporter YP_001842994.1 220703 D 334390 CDS YP_001842995.1 184154655 6233452 complement(221909..224230) 1 NC_010610.1 DNA helicase 224230 6233452 LAF_0179 Lactobacillus fermentum IFO 3956 DNA helicase YP_001842995.1 221909 R 334390 CDS YP_001842996.1 184154656 6233453 224430..225368 1 NC_010610.1 exopolyphosphatase 225368 6233453 LAF_0180 Lactobacillus fermentum IFO 3956 exopolyphosphatase YP_001842996.1 224430 D 334390 CDS YP_001842997.1 184154657 6233454 225361..226638 1 NC_010610.1 hydroxymethylglutaryl-CoA reductase 226638 6233454 LAF_0181 Lactobacillus fermentum IFO 3956 hydroxymethylglutaryl-CoA reductase YP_001842997.1 225361 D 334390 CDS YP_001842998.1 184154658 6233455 226619..227602 1 NC_010610.1 hypothetical protein 227602 6233455 LAF_0182 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001842998.1 226619 D 334390 CDS YP_001842999.1 184154659 6233456 227605..228303 1 NC_010610.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 228303 6233456 LAF_0183 Lactobacillus fermentum IFO 3956 NAD-dependent deacetylase YP_001842999.1 227605 D 334390 CDS YP_001843000.1 184154660 6233457 228519..229694 1 NC_010610.1 multidrug transport protein 229694 6233457 LAF_0184 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001843000.1 228519 D 334390 CDS YP_001843001.1 184154661 6233458 229750..230592 1 NC_010610.1 hypothetical protein 230592 6233458 LAF_0185 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843001.1 229750 D 334390 CDS YP_001843002.1 184154662 6233459 230693..232693 1 NC_010610.1 methionyl-tRNA synthase 232693 6233459 LAF_0186 Lactobacillus fermentum IFO 3956 methionyl-tRNA synthase YP_001843002.1 230693 D 334390 CDS YP_001843003.1 184154663 6233460 232697..233485 1 NC_010610.1 DNase 233485 6233460 LAF_0187 Lactobacillus fermentum IFO 3956 DNase YP_001843003.1 232697 D 334390 CDS YP_001843004.1 184154664 6233461 233472..234041 1 NC_010610.1 hypothetical protein 234041 6233461 LAF_0188 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843004.1 233472 D 334390 CDS YP_001843005.1 184154665 6233462 234034..234921 1 NC_010610.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 234921 ksgA 6233462 ksgA Lactobacillus fermentum IFO 3956 dimethyladenosine transferase YP_001843005.1 234034 D 334390 CDS YP_001843006.1 184154666 6233463 235201..236052 1 NC_010610.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 236052 ipk 6233463 ipk Lactobacillus fermentum IFO 3956 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001843006.1 235201 D 334390 CDS YP_001843007.1 184154667 6233464 236227..237135 1 NC_010610.1 zinc/iron ABC transporter substrate-binding protein 237135 6233464 LAF_0191 Lactobacillus fermentum IFO 3956 zinc/iron ABC transporter substrate-binding protein YP_001843007.1 236227 D 334390 CDS YP_001843008.1 184154668 6233465 237240..237803 1 NC_010610.1 zinc/iron ABC transporter ATP-binding protein 237803 6233465 LAF_0192 Lactobacillus fermentum IFO 3956 zinc/iron ABC transporter ATP-binding protein YP_001843008.1 237240 D 334390 CDS YP_001843009.1 184154669 6233466 237803..238597 1 NC_010610.1 zinc/iron ABC transporter permease 238597 6233466 LAF_0193 Lactobacillus fermentum IFO 3956 zinc/iron ABC transporter permease YP_001843009.1 237803 D 334390 CDS YP_001843010.1 184154670 6233467 238822..239658 1 NC_010610.1 pur operon repressor 239658 6233467 LAF_0194 Lactobacillus fermentum IFO 3956 pur operon repressor YP_001843010.1 238822 D 334390 CDS YP_001843011.1 184154671 6233468 239674..241041 1 NC_010610.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 241041 glmU 6233468 glmU Lactobacillus fermentum IFO 3956 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001843011.1 239674 D 334390 CDS YP_001843012.1 184154672 6233469 241117..242103 1 NC_010610.1 ribose-phosphate pyrophosphokinase 242103 6233469 LAF_0196 Lactobacillus fermentum IFO 3956 ribose-phosphate pyrophosphokinase YP_001843012.1 241117 D 334390 CDS YP_001843013.1 184154673 6233470 242213..242941 1 NC_010610.1 hypothetical protein 242941 6233470 LAF_0197 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843013.1 242213 D 334390 CDS YP_001843014.1 184154674 6233471 complement(243118..243939) 1 NC_010610.1 hydrolase 243939 6233471 LAF_0198 Lactobacillus fermentum IFO 3956 hydrolase YP_001843014.1 243118 R 334390 CDS YP_001843015.1 184154675 6233472 complement(243951..245306) 1 NC_010610.1 hypothetical protein 245306 6233472 LAF_0199 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843015.1 243951 R 334390 CDS YP_001843016.1 184154676 6233473 245421..245846 1 NC_010610.1 hypothetical protein 245846 6233473 LAF_0200 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843016.1 245421 D 334390 CDS YP_001843017.1 184154677 6233474 245892..246479 1 NC_010610.1 participates in both the initiation and recycling phases of transcription; in the presence of the subunit delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 246479 6233474 LAF_0201 Lactobacillus fermentum IFO 3956 DNA-directed RNA polymerase subunit delta YP_001843017.1 245892 D 334390 CDS YP_001843018.1 184154678 6233475 246646..248247 1 NC_010610.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 248247 pyrG 6233475 pyrG Lactobacillus fermentum IFO 3956 CTP synthetase YP_001843018.1 246646 D 334390 CDS YP_001843019.1 184154679 6233476 248458..249726 1 NC_010610.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 249726 6233476 LAF_0203 Lactobacillus fermentum IFO 3956 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001843019.1 248458 D 334390 CDS YP_001843020.1 184154680 6233477 249821..250066 1 NC_010610.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 250066 rpmE2 6233477 rpmE2 Lactobacillus fermentum IFO 3956 50S ribosomal protein L31 type B YP_001843020.1 249821 D 334390 CDS YP_001843021.1 184154681 6233478 250797..251501 1 NC_010610.1 sortase 251501 6233478 LAF_0205 Lactobacillus fermentum IFO 3956 sortase YP_001843021.1 250797 D 334390 CDS YP_001843022.1 184154682 6233479 252185..252742 1 NC_010610.1 hypothetical protein 252742 6233479 LAF_0206 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843022.1 252185 D 334390 CDS YP_001843023.1 184154683 6233480 252753..253652 1 NC_010610.1 metalloprotease; heat shock protein HtpX 253652 6233480 LAF_0207 Lactobacillus fermentum IFO 3956 heat shock protein HtpX YP_001843023.1 252753 D 334390 CDS YP_001843024.1 184154684 6233481 253827..255206 1 NC_010610.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase 255206 6233481 LAF_0208 Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase YP_001843024.1 253827 D 334390 CDS YP_001843025.1 184154685 6233482 255377..256855 1 NC_010610.1 ATP-dependent RNA helicase 256855 6233482 LAF_0209 Lactobacillus fermentum IFO 3956 ATP-dependent RNA helicase YP_001843025.1 255377 D 334390 CDS YP_001843026.1 184154686 6233483 256859..257218 1 NC_010610.1 holo-[acyl-carrier protein] synthase 257218 6233483 LAF_0210 Lactobacillus fermentum IFO 3956 holo-[acyl-carrier protein] synthase YP_001843026.1 256859 D 334390 CDS YP_001843027.1 184154687 6233484 257221..258342 1 NC_010610.1 alanine racemase 258342 6233484 LAF_0211 Lactobacillus fermentum IFO 3956 alanine racemase YP_001843027.1 257221 D 334390 CDS YP_001843028.1 184154688 6233485 258348..258707 1 NC_010610.1 hypothetical protein 258707 6233485 LAF_0212 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843028.1 258348 D 334390 CDS YP_001843029.1 184154689 6233486 complement(258840..259475) 1 NC_010610.1 hypothetical protein 259475 6233486 LAF_0213 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843029.1 258840 R 334390 CDS YP_001843030.1 184154690 6233487 259663..260223 1 NC_010610.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 260223 6233487 LAF_0214 Lactobacillus fermentum IFO 3956 peptidyl-tRNA hydrolase YP_001843030.1 259663 D 334390 CDS YP_001843031.1 184154691 6233488 260241..263783 1 NC_010610.1 transcription-repair coupling factor 263783 6233488 LAF_0215 Lactobacillus fermentum IFO 3956 transcription-repair coupling factor YP_001843031.1 260241 D 334390 CDS YP_001843032.1 184154692 6233489 263780..264052 1 NC_010610.1 hypothetical protein 264052 6233489 LAF_0216 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843032.1 263780 D 334390 CDS YP_001843033.1 184154693 6233490 264141..264497 1 NC_010610.1 hypothetical protein 264497 6233490 LAF_0217 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843033.1 264141 D 334390 CDS YP_001843034.1 184154694 6233491 264626..265132 1 NC_010610.1 RNA binding protein 265132 6233491 LAF_0218 Lactobacillus fermentum IFO 3956 RNA binding protein YP_001843034.1 264626 D 334390 CDS YP_001843035.1 184154695 6232610 265132..266481 1 NC_010610.1 cell cycle protein 266481 6232610 LAF_0219 Lactobacillus fermentum IFO 3956 cell cycle protein YP_001843035.1 265132 D 334390 CDS YP_001843036.1 184154696 6232611 266498..267046 1 NC_010610.1 hypoxanthine-guanine phosphoribosyltransferase 267046 6232611 LAF_0220 Lactobacillus fermentum IFO 3956 hypoxanthine-guanine phosphoribosyltransferase YP_001843036.1 266498 D 334390 CDS YP_001843037.1 184154697 6232612 267130..269298 1 NC_010610.1 cell division protein FtsH 269298 6232612 LAF_0221 Lactobacillus fermentum IFO 3956 cell division protein FtsH YP_001843037.1 267130 D 334390 CDS YP_001843038.1 184154698 6232613 269380..270261 1 NC_010610.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 270261 hslO 6232613 hslO Lactobacillus fermentum IFO 3956 Hsp33-like chaperonin YP_001843038.1 269380 D 334390 CDS YP_001843039.1 184154699 6232614 270350..271351 1 NC_010610.1 hypothetical protein 271351 6232614 LAF_0223 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843039.1 270350 D 334390 CDS YP_001843040.1 184154700 6233328 271367..272860 1 NC_010610.1 lysyl-tRNA synthase 272860 6233328 LAF_0224 Lactobacillus fermentum IFO 3956 lysyl-tRNA synthase YP_001843040.1 271367 D 334390 CDS YP_001843041.1 184154701 6232389 281848..282612 1 NC_010610.1 hypothetical protein 282612 6232389 LAF_0225 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843041.1 281848 D 334390 CDS YP_001843042.1 184154702 6233330 complement(285332..285574) 1 NC_010610.1 hypothetical protein 285574 6233330 LAF_0226 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843042.1 285332 R 334390 CDS YP_001843043.1 184154703 6233331 complement(286074..286640) 1 NC_010610.1 hypothetical protein 286640 6233331 LAF_0227 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843043.1 286074 R 334390 CDS YP_001843044.1 184154704 6233332 complement(289237..290061) 1 NC_010610.1 hypothetical protein 290061 6233332 LAF_0228 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843044.1 289237 R 334390 CDS YP_001843045.1 184154705 6233333 complement(290720..290986) 1 NC_010610.1 hypothetical protein 290986 6233333 LAF_0229 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843045.1 290720 R 334390 CDS YP_001843046.1 184154706 6233334 291300..292412 1 NC_010610.1 hypothetical protein 292412 6233334 LAF_0230 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843046.1 291300 D 334390 CDS YP_001843047.1 184154707 6233335 292530..293633 1 NC_010610.1 integrase 293633 6233335 LAF_0231 Lactobacillus fermentum IFO 3956 integrase YP_001843047.1 292530 D 334390 CDS YP_001843048.1 184154708 6233336 complement(295677..296621) 1 NC_010610.1 L-2-hydroxyisocaproate dehydrogenase 296621 6233336 LAF_0232 Lactobacillus fermentum IFO 3956 L-2-hydroxyisocaproate dehydrogenase YP_001843048.1 295677 R 334390 CDS YP_001843049.1 184154709 6233337 complement(296654..297463) 1 NC_010610.1 2-oxo-hept-3-ene-1,7-dioate hydratase 297463 6233337 LAF_0233 Lactobacillus fermentum IFO 3956 2-oxo-hept-3-ene-1,7-dioate hydratase YP_001843049.1 296654 R 334390 CDS YP_001843050.1 184154710 6233338 complement(297654..298988) 1 NC_010610.1 transport protein 298988 6233338 LAF_0234 Lactobacillus fermentum IFO 3956 transport protein YP_001843050.1 297654 R 334390 CDS YP_001843051.1 184154711 6233339 299427..299834 1 NC_010610.1 transposase 299834 6233339 LAF_0235 Lactobacillus fermentum IFO 3956 transposase YP_001843051.1 299427 D 334390 CDS YP_001843052.1 184154712 6233340 299834..301009 1 NC_010610.1 transposase 301009 6233340 LAF_0236 Lactobacillus fermentum IFO 3956 transposase YP_001843052.1 299834 D 334390 CDS YP_001843053.1 184154713 6233341 301213..303441 1 NC_010610.1 hypothetical protein 303441 6233341 LAF_0237 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843053.1 301213 D 334390 CDS YP_001843054.1 184154714 6233342 303674..305170 1 NC_010610.1 dipeptide/tripeptide transport protein 305170 6233342 LAF_0238 Lactobacillus fermentum IFO 3956 dipeptide/tripeptide transport protein YP_001843054.1 303674 D 334390 CDS YP_001843055.1 184154715 6233343 305264..306109 1 NC_010610.1 hypothetical protein 306109 6233343 LAF_0239 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843055.1 305264 D 334390 CDS YP_001843056.1 184154716 6232391 306403..307047 1 NC_010610.1 hypothetical protein 307047 6232391 LAF_0240 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843056.1 306403 D 334390 CDS YP_001843057.1 184154717 6233345 307130..307843 1 NC_010610.1 aspartate racemase 307843 6233345 LAF_0241 Lactobacillus fermentum IFO 3956 aspartate racemase YP_001843057.1 307130 D 334390 CDS YP_001843058.1 184154718 6233346 307999..308700 1 NC_010610.1 transcription regulator 308700 6233346 LAF_0242 Lactobacillus fermentum IFO 3956 transcription regulator YP_001843058.1 307999 D 334390 CDS YP_001843059.1 184154719 6233347 308731..310191 1 NC_010610.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 310191 6233347 LAF_0243 Lactobacillus fermentum IFO 3956 nicotinate phosphoribosyltransferase YP_001843059.1 308731 D 334390 CDS YP_001843060.1 184154720 6233348 310208..311038 1 NC_010610.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 311038 nadE 6233348 nadE Lactobacillus fermentum IFO 3956 NAD synthetase YP_001843060.1 310208 D 334390 CDS YP_001843061.1 184154721 6233349 311042..313219 1 NC_010610.1 hypothetical protein 313219 6233349 LAF_0245 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843061.1 311042 D 334390 CDS YP_001843062.1 184154722 6233350 313212..313667 1 NC_010610.1 hypothetical protein 313667 6233350 LAF_0246 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843062.1 313212 D 334390 CDS YP_001843063.1 184154723 6232392 313954..315834 1 NC_010610.1 beta-galactosidase large subunit 315834 6232392 LAF_0247 Lactobacillus fermentum IFO 3956 beta-galactosidase large subunit YP_001843063.1 313954 D 334390 CDS YP_001843064.1 184154724 6233352 315818..316780 1 NC_010610.1 beta-galactosidase small subunit 316780 6233352 LAF_0248 Lactobacillus fermentum IFO 3956 beta-galactosidase small subunit YP_001843064.1 315818 D 334390 CDS YP_001843065.1 184154725 6233353 316923..317879 1 NC_010610.1 malate transport protein 317879 6233353 LAF_0249 Lactobacillus fermentum IFO 3956 malate transport protein YP_001843065.1 316923 D 334390 CDS YP_001843066.1 184154726 6233354 318167..318844 1 NC_010610.1 phosphoglycerate mutase 318844 6233354 LAF_0250 Lactobacillus fermentum IFO 3956 phosphoglycerate mutase YP_001843066.1 318167 D 334390 CDS YP_001843067.1 184154727 6233355 318848..319723 1 NC_010610.1 hypothetical protein 319723 6233355 LAF_0251 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843067.1 318848 D 334390 CDS YP_001843068.1 184154728 6233356 complement(320040..321377) 1 NC_010610.1 aminopeptidase C 321377 6233356 LAF_0252 Lactobacillus fermentum IFO 3956 aminopeptidase C YP_001843068.1 320040 R 334390 CDS YP_001843069.1 184154729 6233357 complement(321441..322055) 1 NC_010610.1 galactoside O-acetyltransferase 322055 6233357 LAF_0253 Lactobacillus fermentum IFO 3956 galactoside O-acetyltransferase YP_001843069.1 321441 R 334390 CDS YP_001843070.1 184154730 6233358 complement(322083..322769) 1 NC_010610.1 ribose 5-phosphate isomerase 322769 6233358 LAF_0254 Lactobacillus fermentum IFO 3956 ribose 5-phosphate isomerase YP_001843070.1 322083 R 334390 CDS YP_001843071.1 184154731 6233359 complement(322781..323092) 1 NC_010610.1 acetyltransferase 323092 6233359 LAF_0255 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843071.1 322781 R 334390 CDS YP_001843072.1 184154732 6233360 323292..323831 1 NC_010610.1 dUTPase 323831 6233360 LAF_0256 Lactobacillus fermentum IFO 3956 dUTPase YP_001843072.1 323292 D 334390 CDS YP_001843073.1 184154733 6233361 323844..325217 1 NC_010610.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 325217 6233361 LAF_0257 Lactobacillus fermentum IFO 3956 DNA repair protein RadA YP_001843073.1 323844 D 334390 CDS YP_001843074.1 184154734 6233362 325250..326383 1 NC_010610.1 hypothetical protein 326383 6233362 LAF_0258 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843074.1 325250 D 334390 CDS YP_001843075.1 184154735 6233363 326454..327950 1 NC_010610.1 glutamyl-tRNA synthase 327950 6233363 LAF_0259 Lactobacillus fermentum IFO 3956 glutamyl-tRNA synthase YP_001843075.1 326454 D 334390 CDS YP_001843076.1 184154736 6233364 328018..328587 1 NC_010610.1 hypothetical protein 328587 6233364 LAF_0260 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843076.1 328018 D 334390 CDS YP_001843077.1 184154737 6233365 328935..330353 1 NC_010610.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 330353 cysS 6233365 cysS Lactobacillus fermentum IFO 3956 cysteinyl-tRNA synthetase YP_001843077.1 328935 D 334390 CDS YP_001843078.1 184154738 6233366 330360..330773 1 NC_010610.1 hypothetical protein 330773 6233366 LAF_0262 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843078.1 330360 D 334390 CDS YP_001843079.1 184154739 6233367 330763..331518 1 NC_010610.1 RNA methyltransferase 331518 6233367 LAF_0263 Lactobacillus fermentum IFO 3956 RNA methyltransferase YP_001843079.1 330763 D 334390 CDS YP_001843080.1 184154740 6233368 331757..332335 1 NC_010610.1 RNA polymerase sigma-30 factor 332335 6233368 LAF_0264 Lactobacillus fermentum IFO 3956 RNA polymerase sigma-30 factor YP_001843080.1 331757 D 334390 CDS YP_001843081.1 184154741 6233369 332400..332546 1 NC_010610.1 50S ribosomal protein L33 332546 6233369 LAF_0265 Lactobacillus fermentum IFO 3956 50S ribosomal protein L33 YP_001843081.1 332400 D 334390 CDS YP_001843082.1 184154742 6233370 332561..332737 1 NC_010610.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 332737 secE 6233370 secE Lactobacillus fermentum IFO 3956 preprotein translocase subunit SecE YP_001843082.1 332561 D 334390 CDS YP_001843083.1 184154743 6233371 332846..333391 1 NC_010610.1 transcription antitermination protein 333391 6233371 LAF_0267 Lactobacillus fermentum IFO 3956 transcription antitermination protein YP_001843083.1 332846 D 334390 CDS YP_001843084.1 184154744 6233372 333511..333936 1 NC_010610.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 333936 rplK 6233372 rplK Lactobacillus fermentum IFO 3956 50S ribosomal protein L11 YP_001843084.1 333511 D 334390 CDS YP_001843085.1 184154745 6233373 334030..334722 1 NC_010610.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 334722 rplA 6233373 rplA Lactobacillus fermentum IFO 3956 50S ribosomal protein L1 YP_001843085.1 334030 D 334390 CDS YP_001843086.1 184154746 6233374 complement(334870..336198) 1 NC_010610.1 amino acid transporter 336198 6233374 LAF_0270 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001843086.1 334870 R 334390 CDS YP_001843087.1 184154747 6233375 336575..337078 1 NC_010610.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 337078 rplJ 6233375 rplJ Lactobacillus fermentum IFO 3956 50S ribosomal protein L10 YP_001843087.1 336575 D 334390 CDS YP_001843088.1 184154748 6233376 337147..337512 1 NC_010610.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 337512 rplL 6233376 rplL Lactobacillus fermentum IFO 3956 50S ribosomal protein L7/L12 YP_001843088.1 337147 D 334390 CDS YP_001843089.1 184154749 6233377 337956..339392 1 NC_010610.1 cytochrome D ubiquinol oxidase subunit I 339392 6233377 LAF_0273 Lactobacillus fermentum IFO 3956 cytochrome D ubiquinol oxidase subunit I YP_001843089.1 337956 D 334390 CDS YP_001843090.1 184154750 6233378 339394..340410 1 NC_010610.1 cytochrome D ubiquinol oxidase subunit II 340410 6233378 LAF_0274 Lactobacillus fermentum IFO 3956 cytochrome D ubiquinol oxidase subunit II YP_001843090.1 339394 D 334390 CDS YP_001843091.1 184154751 6233379 340410..342140 1 NC_010610.1 cytochrome D ABC transporter ATP-binding and permease components 342140 6233379 LAF_0275 Lactobacillus fermentum IFO 3956 cytochrome D ABC transporter ATP-binding and permease components YP_001843091.1 340410 D 334390 CDS YP_001843092.1 184154752 6233380 342130..343881 1 NC_010610.1 cytochrome D ABC transporter ATP-binding and permease components 343881 6233380 LAF_0276 Lactobacillus fermentum IFO 3956 cytochrome D ABC transporter ATP-binding and permease components YP_001843092.1 342130 D 334390 CDS YP_001843093.1 184154753 6233381 344360..346963 1 NC_010610.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase 346963 6233381 LAF_0277 Lactobacillus fermentum IFO 3956 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001843093.1 344360 D 334390 CDS YP_001843094.1 184154754 6233382 347490..348869 1 NC_010610.1 branched-chain amino acid transporter 348869 6233382 LAF_0278 Lactobacillus fermentum IFO 3956 branched-chain amino acid transporter YP_001843094.1 347490 D 334390 CDS YP_001843095.1 184154755 6233383 complement(348958..349959) 1 NC_010610.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 349959 nrdF 6233383 nrdF Lactobacillus fermentum IFO 3956 ribonucleotide-diphosphate reductase subunit beta YP_001843095.1 348958 R 334390 CDS YP_001843096.1 184154756 6233384 complement(350021..352192) 1 NC_010610.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 352192 6233384 LAF_0280 Lactobacillus fermentum IFO 3956 ribonucleotide-diphosphate reductase subunit alpha YP_001843096.1 350021 R 334390 CDS YP_001843097.1 184154757 6233385 complement(352292..352513) 1 NC_010610.1 glutaredoxin 352513 6233385 LAF_0281 Lactobacillus fermentum IFO 3956 glutaredoxin YP_001843097.1 352292 R 334390 CDS YP_001843098.1 184154758 6233386 352770..353294 1 NC_010610.1 cytosine/adenosine deaminase 353294 6233386 LAF_0282 Lactobacillus fermentum IFO 3956 cytosine/adenosine deaminase YP_001843098.1 352770 D 334390 CDS YP_001843099.1 184154759 6233387 353550..355241 1 NC_010610.1 DNA-directed DNA polymerase III gamma/tau subunit 355241 6233387 LAF_0283 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase III gamma/tau subunit YP_001843099.1 353550 D 334390 CDS YP_001843100.1 184154760 6233388 355264..355572 1 NC_010610.1 hypothetical protein 355572 6233388 LAF_0284 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843100.1 355264 D 334390 CDS YP_001843101.1 184154761 6233389 355588..356187 1 NC_010610.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 356187 recR 6233389 recR Lactobacillus fermentum IFO 3956 recombination protein RecR YP_001843101.1 355588 D 334390 CDS YP_001843102.1 184154762 6233390 356189..356437 1 NC_010610.1 hypothetical protein 356437 6233390 LAF_0286 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843102.1 356189 D 334390 CDS YP_001843103.1 184154763 6233391 356457..357101 1 NC_010610.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 357101 tmk 6233391 tmk Lactobacillus fermentum IFO 3956 thymidylate kinase YP_001843103.1 356457 D 334390 CDS YP_001843104.1 184154764 6233392 357114..357434 1 NC_010610.1 hypothetical protein 357434 6233392 LAF_0288 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843104.1 357114 D 334390 CDS YP_001843105.1 184154765 6233393 357452..358492 1 NC_010610.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the subunit gamma to transfer the subunit beta on the DNA; DNA polymerase III subunit delta' 358492 6233393 LAF_0289 Lactobacillus fermentum IFO 3956 DNA polymerase III subunit delta' YP_001843105.1 357452 D 334390 CDS YP_001843106.1 184154766 6233394 358485..358820 1 NC_010610.1 hypothetical protein 358820 6233394 LAF_0290 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843106.1 358485 D 334390 CDS YP_001843107.1 184154767 6233395 358823..359683 1 NC_010610.1 methyltransferase 359683 6233395 LAF_0291 Lactobacillus fermentum IFO 3956 methyltransferase YP_001843107.1 358823 D 334390 CDS YP_001843108.1 184154768 6233396 359703..360458 1 NC_010610.1 hypothetical protein 360458 6233396 LAF_0292 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843108.1 359703 D 334390 CDS YP_001843109.1 184154769 6233397 360578..362089 1 NC_010610.1 exopolyphosphatase 362089 6233397 LAF_0293 Lactobacillus fermentum IFO 3956 exopolyphosphatase YP_001843109.1 360578 D 334390 CDS YP_001843110.1 184154770 6233398 362090..364318 1 NC_010610.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 364318 6233398 LAF_0294 Lactobacillus fermentum IFO 3956 polyphosphate kinase YP_001843110.1 362090 D 334390 CDS YP_001843111.1 184154771 6233399 364332..365285 1 NC_010610.1 exopolyphosphatase 365285 6233399 LAF_0295 Lactobacillus fermentum IFO 3956 exopolyphosphatase YP_001843111.1 364332 D 334390 CDS YP_001843112.1 184154772 6233400 365375..366370 1 NC_010610.1 UDP-glucose 4-epimerase 366370 6233400 LAF_0296 Lactobacillus fermentum IFO 3956 UDP-glucose 4-epimerase YP_001843112.1 365375 D 334390 CDS YP_001843113.1 184154773 6233401 complement(366591..367442) 1 NC_010610.1 two-component response regulator 367442 6233401 LAF_0297 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001843113.1 366591 R 334390 CDS YP_001843114.1 184154774 6233402 367930..368931 1 NC_010610.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 368931 6233402 LAF_0298 Lactobacillus fermentum IFO 3956 ornithine carbamoyltransferase YP_001843114.1 367930 D 334390 CDS YP_001843115.1 184154775 6233403 368947..369876 1 NC_010610.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 369876 6233403 LAF_0299 Lactobacillus fermentum IFO 3956 carbamate kinase YP_001843115.1 368947 D 334390 CDS YP_001843116.1 184154776 6233404 369937..371160 1 NC_010610.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 371160 6233404 LAF_0300 Lactobacillus fermentum IFO 3956 arginine deiminase YP_001843116.1 369937 D 334390 CDS YP_001843117.1 184154777 6233405 371281..372699 1 NC_010610.1 arginine-ornithine antiporter 372699 6233405 LAF_0301 Lactobacillus fermentum IFO 3956 arginine-ornithine antiporter YP_001843117.1 371281 D 334390 CDS YP_001843118.1 184154778 6233406 complement(372850..373971) 1 NC_010610.1 hypothetical protein 373971 6233406 LAF_0302 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843118.1 372850 R 334390 CDS YP_001843119.1 184154779 6233407 374435..375553 1 NC_010610.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 375553 6233407 LAF_0303 Lactobacillus fermentum IFO 3956 transaminase YP_001843119.1 374435 D 334390 CDS YP_001843120.1 184154780 6233408 375624..376355 1 NC_010610.1 glycoprotein endopeptidase 376355 6233408 LAF_0304 Lactobacillus fermentum IFO 3956 glycoprotein endopeptidase YP_001843120.1 375624 D 334390 CDS YP_001843121.1 184154781 6233409 376345..376944 1 NC_010610.1 hypothetical protein 376944 6233409 LAF_0305 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843121.1 376345 D 334390 CDS YP_001843122.1 184154782 6232960 376913..377947 1 NC_010610.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 377947 6232960 LAF_0306 Lactobacillus fermentum IFO 3956 DNA-binding/iron metalloprotein/AP endonuclease YP_001843122.1 376913 D 334390 CDS YP_001843123.1 184154783 6232411 378223..378462 1 NC_010610.1 hypothetical protein 378462 6232411 LAF_0307 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843123.1 378223 D 334390 CDS YP_001843124.1 184154784 6232412 378825..379280 1 NC_010610.1 (3R)-hydroxymyristoyl-ACP dehydratase 379280 6232412 LAF_0308 Lactobacillus fermentum IFO 3956 (3R)-hydroxymyristoyl-ACP dehydratase YP_001843124.1 378825 D 334390 CDS YP_001843125.1 184154785 6233059 379356..379796 1 NC_010610.1 transcriptional regulator 379796 6233059 LAF_0309 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843125.1 379356 D 334390 CDS YP_001843126.1 184154786 6233060 379820..380779 1 NC_010610.1 3-oxoacyl-ACP synthase III 380779 6233060 LAF_0310 Lactobacillus fermentum IFO 3956 3-oxoacyl-ACP synthase III YP_001843126.1 379820 D 334390 CDS YP_001843127.1 184154787 6233061 380808..381056 1 NC_010610.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 381056 acpP 6233061 acpP Lactobacillus fermentum IFO 3956 acyl carrier protein YP_001843127.1 380808 D 334390 CDS YP_001843128.1 184154788 6233062 381056..382003 1 NC_010610.1 malonyl CoA-acyl carrier protein transacylase 382003 6233062 LAF_0312 Lactobacillus fermentum IFO 3956 malonyl CoA-acyl carrier protein transacylase YP_001843128.1 381056 D 334390 CDS YP_001843129.1 184154789 6233063 381987..382718 1 NC_010610.1 3-oxoacyl-[acyl-carrier protein] reductase 382718 6233063 LAF_0313 Lactobacillus fermentum IFO 3956 3-oxoacyl-[acyl-carrier protein] reductase YP_001843129.1 381987 D 334390 CDS YP_001843130.1 184154790 6233064 382731..383969 1 NC_010610.1 3-oxoacyl-[acyl-carrier protein] synthase II 383969 6233064 LAF_0314 Lactobacillus fermentum IFO 3956 3-oxoacyl-[acyl-carrier protein] synthase II YP_001843130.1 382731 D 334390 CDS YP_001843131.1 184154791 6233065 383972..384418 1 NC_010610.1 acetyl-CoA carboxylase biotin carboxyl carrier protein 384418 6233065 LAF_0315 Lactobacillus fermentum IFO 3956 acetyl-CoA carboxylase biotin carboxyl carrier protein YP_001843131.1 383972 D 334390 CDS YP_001843132.1 184154792 6233066 384421..384855 1 NC_010610.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 384855 fabZ 6233066 fabZ Lactobacillus fermentum IFO 3956 (3R)-hydroxymyristoyl-ACP dehydratase YP_001843132.1 384421 D 334390 CDS YP_001843133.1 184154793 6233067 384876..386273 1 NC_010610.1 acetyl-CoA carboxylase biotin carboxylase subunit 386273 6233067 LAF_0317 Lactobacillus fermentum IFO 3956 acetyl-CoA carboxylase biotin carboxylase subunit YP_001843133.1 384876 D 334390 CDS YP_001843134.1 184154794 6233068 386242..387090 1 NC_010610.1 acetyl-CoA carboxylase carboxyl transferase subunit beta 387090 6233068 LAF_0318 Lactobacillus fermentum IFO 3956 acetyl-CoA carboxylase carboxyl transferase subunit beta YP_001843134.1 386242 D 334390 CDS YP_001843135.1 184154795 6233069 387083..387856 1 NC_010610.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha 387856 6233069 LAF_0319 Lactobacillus fermentum IFO 3956 acetyl-CoA carboxylase carboxyl transferase subunit alpha YP_001843135.1 387083 D 334390 CDS YP_001843136.1 184154796 6233070 387874..388638 1 NC_010610.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 388638 6233070 LAF_0320 Lactobacillus fermentum IFO 3956 enoyl-(acyl carrier protein) reductase YP_001843136.1 387874 D 334390 CDS YP_001843137.1 184154797 6233071 388747..389292 1 NC_010610.1 hypothetical protein 389292 6233071 LAF_0321 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843137.1 388747 D 334390 CDS YP_001843138.1 184154798 6233072 389283..390254 1 NC_010610.1 biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor 390254 6233072 LAF_0322 Lactobacillus fermentum IFO 3956 biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor YP_001843138.1 389283 D 334390 CDS YP_001843139.1 184154799 6233073 complement(390368..392311) 1 NC_010610.1 ABC transporter ATP-binding protein 392311 6233073 LAF_0323 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843139.1 390368 R 334390 CDS YP_001843140.1 184154800 6233074 392478..393128 1 NC_010610.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 393128 6233074 LAF_0324 Lactobacillus fermentum IFO 3956 redox-sensing transcriptional repressor Rex YP_001843140.1 392478 D 334390 CDS YP_001843141.1 184154801 6233075 393441..393722 1 NC_010610.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 393722 groES 6233075 groES Lactobacillus fermentum IFO 3956 co-chaperonin GroES YP_001843141.1 393441 D 334390 CDS YP_001843142.1 184154802 6233076 393747..395378 1 NC_010610.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 395378 groEL 6233076 groEL Lactobacillus fermentum IFO 3956 chaperonin GroEL YP_001843142.1 393747 D 334390 CDS YP_001843143.1 184154803 6233077 395519..397357 1 NC_010610.1 transport protein 397357 6233077 LAF_0327 Lactobacillus fermentum IFO 3956 transport protein YP_001843143.1 395519 D 334390 CDS YP_001843144.1 184154804 6233078 397564..397830 1 NC_010610.1 hypothetical protein 397830 6233078 LAF_0328 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843144.1 397564 D 334390 CDS YP_001843145.1 184154805 6233079 complement(398029..398667) 1 NC_010610.1 hypothetical protein 398667 6233079 LAF_0329 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843145.1 398029 R 334390 CDS YP_001843146.1 184154806 6233080 398731..400047 1 NC_010610.1 DNA helicase 400047 6233080 LAF_0330 Lactobacillus fermentum IFO 3956 DNA helicase YP_001843146.1 398731 D 334390 CDS YP_001843147.1 184154807 6233081 400044..400718 1 NC_010610.1 hypothetical protein 400718 6233081 LAF_0331 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843147.1 400044 D 334390 CDS YP_001843148.1 184154808 6233082 400854..401399 1 NC_010610.1 ribosomal subunit interface protein 401399 6233082 LAF_0332 Lactobacillus fermentum IFO 3956 ribosomal subunit interface protein YP_001843148.1 400854 D 334390 CDS YP_001843149.1 184154809 6233083 401570..403939 1 NC_010610.1 preprotein translocase SecA subunit 403939 6233083 LAF_0333 Lactobacillus fermentum IFO 3956 preprotein translocase SecA subunit YP_001843149.1 401570 D 334390 CDS YP_001843150.1 184154810 6233084 404048..405115 1 NC_010610.1 peptide chain release factor 2 405115 6233084 LAF_0334 Lactobacillus fermentum IFO 3956 peptide chain release factor 2 YP_001843150.1 404048 D 334390 CDS YP_001843151.1 184154811 6233085 405171..405500 1 NC_010610.1 transcriptional regulator 405500 6233085 LAF_0335 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843151.1 405171 D 334390 CDS YP_001843152.1 184154812 6233086 405500..405853 1 NC_010610.1 hypothetical protein 405853 6233086 LAF_0336 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843152.1 405500 D 334390 CDS YP_001843153.1 184154813 6233087 405868..406830 1 NC_010610.1 HPr-P(Ser) kinase/phosphatase 406830 6233087 LAF_0337 Lactobacillus fermentum IFO 3956 HPr-P(Ser) kinase/phosphatase YP_001843153.1 405868 D 334390 CDS YP_001843154.1 184154814 6233088 406823..407668 1 NC_010610.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 407668 6233088 LAF_0338 Lactobacillus fermentum IFO 3956 prolipoprotein diacylglyceryl transferase YP_001843154.1 406823 D 334390 CDS YP_001843155.1 184154815 6233089 407665..408678 1 NC_010610.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 408678 gpsA 6233089 gpsA Lactobacillus fermentum IFO 3956 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001843155.1 407665 D 334390 CDS YP_001843156.1 184154816 6233090 408741..409652 1 NC_010610.1 UTP-glucose-1-phosphate uridylyltransferase 409652 6233090 LAF_0340 Lactobacillus fermentum IFO 3956 UTP-glucose-1-phosphate uridylyltransferase YP_001843156.1 408741 D 334390 CDS YP_001843157.1 184154817 6233091 410176..410955 1 NC_010610.1 hypothetical protein 410955 6233091 LAF_0341 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843157.1 410176 D 334390 CDS YP_001843158.1 184154818 6233092 410971..412149 1 NC_010610.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 412149 6233092 LAF_0342 Lactobacillus fermentum IFO 3956 transaminase YP_001843158.1 410971 D 334390 CDS YP_001843159.1 184154819 6233093 412192..413166 1 NC_010610.1 2-dehydropantoate 2-reductase 413166 6233093 LAF_0343 Lactobacillus fermentum IFO 3956 2-dehydropantoate 2-reductase YP_001843159.1 412192 D 334390 CDS YP_001843160.1 184154820 6233094 413268..413684 1 NC_010610.1 hypothetical protein 413684 6233094 LAF_0344 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843160.1 413268 D 334390 CDS YP_001843161.1 184154821 6233095 414789..415607 1 NC_010610.1 homoserine O-succinyltransferase 415607 6233095 LAF_0345 Lactobacillus fermentum IFO 3956 homoserine O-succinyltransferase YP_001843161.1 414789 D 334390 CDS YP_001843162.1 184154822 6233096 415628..416554 1 NC_010610.1 cysteine synthase 416554 6233096 LAF_0346 Lactobacillus fermentum IFO 3956 cysteine synthase YP_001843162.1 415628 D 334390 CDS YP_001843163.1 184154823 6233097 complement(416745..417773) 1 NC_010610.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 417773 6233097 LAF_0347 Lactobacillus fermentum IFO 3956 branched-chain amino acid aminotransferase YP_001843163.1 416745 R 334390 CDS YP_001843164.1 184154824 6233098 complement(417799..418740) 1 NC_010610.1 L-2-hydroxyisocaproate dehydrogenase 418740 6233098 LAF_0348 Lactobacillus fermentum IFO 3956 L-2-hydroxyisocaproate dehydrogenase YP_001843164.1 417799 R 334390 CDS YP_001843165.1 184154825 6233099 418843..419643 1 NC_010610.1 hypothetical protein 419643 6233099 LAF_0349 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843165.1 418843 D 334390 CDS YP_001843166.1 184154826 6233100 419706..421430 1 NC_010610.1 phosphoglucomutase 421430 6233100 LAF_0350 Lactobacillus fermentum IFO 3956 phosphoglucomutase YP_001843166.1 419706 D 334390 CDS YP_001843167.1 184154827 6233101 421645..422280 1 NC_010610.1 hypothetical protein 422280 6233101 LAF_0351 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843167.1 421645 D 334390 CDS YP_001843168.1 184154828 6233102 422286..422516 1 NC_010610.1 hypothetical protein 422516 6233102 LAF_0352 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843168.1 422286 D 334390 CDS YP_001843169.1 184154829 6233103 422616..424631 1 NC_010610.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 424631 6233103 LAF_0353 Lactobacillus fermentum IFO 3956 excinuclease ABC subunit B YP_001843169.1 422616 D 334390 CDS YP_001843170.1 184154830 6233104 424641..427502 1 NC_010610.1 excinuclease ABC subunit A 427502 6233104 LAF_0354 Lactobacillus fermentum IFO 3956 excinuclease ABC subunit A YP_001843170.1 424641 D 334390 CDS YP_001843171.1 184154831 6233105 427592..428677 1 NC_010610.1 hypothetical protein 428677 6233105 LAF_0355 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843171.1 427592 D 334390 CDS YP_001843172.1 184154832 6233106 428896..429765 1 NC_010610.1 hypothetical protein 429765 6233106 LAF_0356 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843172.1 428896 D 334390 CDS YP_001843173.1 184154833 6233107 429784..430764 1 NC_010610.1 hypothetical protein 430764 6233107 LAF_0357 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843173.1 429784 D 334390 CDS YP_001843174.1 184154834 6233108 430782..431720 1 NC_010610.1 hypothetical protein 431720 6233108 LAF_0358 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843174.1 430782 D 334390 CDS YP_001843175.1 184154835 6233109 complement(431841..432488) 1 NC_010610.1 transcriptional regulator 432488 6233109 LAF_0359 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843175.1 431841 R 334390 CDS YP_001843176.1 184154836 6233110 complement(432602..433192) 1 NC_010610.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 433192 clpP 6233110 clpP Lactobacillus fermentum IFO 3956 ATP-dependent Clp protease proteolytic subunit YP_001843176.1 432602 R 334390 CDS YP_001843177.1 184154837 6231781 complement(433609..433743) 1 NC_010610.1 hypothetical protein 433743 6231781 LAF_0361 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843177.1 433609 R 334390 CDS YP_001843178.1 184154838 6232394 complement(434496..434627) 1 NC_010610.1 hypothetical protein 434627 6232394 LAF_0362 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843178.1 434496 R 334390 CDS YP_001843179.1 184154839 6232414 434899..435912 1 NC_010610.1 glyceraldehyde 3-phosphate dehydrogenase 435912 6232414 LAF_0363 Lactobacillus fermentum IFO 3956 glyceraldehyde 3-phosphate dehydrogenase YP_001843179.1 434899 D 334390 CDS YP_001843180.1 184154840 6232415 435994..437199 1 NC_010610.1 phosphoglycerate kinase 437199 6232415 LAF_0364 Lactobacillus fermentum IFO 3956 phosphoglycerate kinase YP_001843180.1 435994 D 334390 CDS YP_001843181.1 184154841 6232416 437305..438072 1 NC_010610.1 triosephosphate isomerase 438072 6232416 LAF_0365 Lactobacillus fermentum IFO 3956 triosephosphate isomerase YP_001843181.1 437305 D 334390 CDS YP_001843182.1 184154842 6232417 438189..439511 1 NC_010610.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 439511 eno 6232417 eno Lactobacillus fermentum IFO 3956 phosphopyruvate hydratase YP_001843182.1 438189 D 334390 CDS YP_001843183.1 184154843 6232418 439696..441099 1 NC_010610.1 hypothetical protein 441099 6232418 LAF_0367 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843183.1 439696 D 334390 CDS YP_001843184.1 184154844 6232419 441188..442738 1 NC_010610.1 chloride channel protein 442738 6232419 LAF_0368 Lactobacillus fermentum IFO 3956 chloride channel protein YP_001843184.1 441188 D 334390 CDS YP_001843185.1 184154845 6232420 442801..443040 1 NC_010610.1 preprotein translocase SecG subunit 443040 6232420 LAF_0369 Lactobacillus fermentum IFO 3956 preprotein translocase SecG subunit YP_001843185.1 442801 D 334390 CDS YP_001843186.1 184154846 6232421 443093..445486 1 NC_010610.1 ribonuclease R 445486 6232421 LAF_0370 Lactobacillus fermentum IFO 3956 ribonuclease R YP_001843186.1 443093 D 334390 CDS YP_001843187.1 184154847 6232422 445507..445980 1 NC_010610.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 445980 smpB 6232422 smpB Lactobacillus fermentum IFO 3956 SsrA-binding protein YP_001843187.1 445507 D 334390 CDS YP_001843188.1 184154848 6232423 complement(446008..446592) 1 NC_010610.1 hypothetical protein 446592 6232423 LAF_0372 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843188.1 446008 R 334390 CDS YP_001843189.1 184154849 6232424 446730..447419 1 NC_010610.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 447419 6232424 LAF_0373 Lactobacillus fermentum IFO 3956 uracil-DNA glycosylase YP_001843189.1 446730 D 334390 CDS YP_001843190.1 184154850 6232425 447452..448426 1 NC_010610.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 448426 eutD 6232425 eutD Lactobacillus fermentum IFO 3956 phosphotransacetylase YP_001843190.1 447452 D 334390 CDS YP_001843191.1 184154851 6232426 448435..448887 1 NC_010610.1 hypothetical protein 448887 6232426 LAF_0375 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843191.1 448435 D 334390 CDS YP_001843192.1 184154852 6232427 448887..449402 1 NC_010610.1 acetyltransferase 449402 6232427 LAF_0376 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843192.1 448887 D 334390 CDS YP_001843193.1 184154853 6232428 complement(449532..450071) 1 NC_010610.1 DNA-directed DNA polymerase III subunit epsilon 450071 6232428 LAF_0377 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase III subunit epsilon YP_001843193.1 449532 R 334390 CDS YP_001843194.1 184154854 6232429 450193..451095 1 NC_010610.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 451095 murB 6232429 murB Lactobacillus fermentum IFO 3956 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001843194.1 450193 D 334390 CDS YP_001843195.1 184154855 6232430 451101..451952 1 NC_010610.1 hypothetical protein 451952 6232430 LAF_0379 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843195.1 451101 D 334390 CDS YP_001843196.1 184154856 6232431 451942..452820 1 NC_010610.1 hypothetical protein 452820 6232431 LAF_0380 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843196.1 451942 D 334390 CDS YP_001843197.1 184154857 6232432 452860..454218 1 NC_010610.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 454218 glmM 6232432 glmM Lactobacillus fermentum IFO 3956 phosphoglucosamine mutase YP_001843197.1 452860 D 334390 CDS YP_001843198.1 184154858 6232433 454432..456252 1 NC_010610.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 456252 6232433 LAF_0382 Lactobacillus fermentum IFO 3956 glucosamine--fructose-6-phosphate aminotransferase YP_001843198.1 454432 D 334390 CDS YP_001843199.1 184154859 6232434 456530..456844 1 NC_010610.1 hypothetical protein 456844 6232434 LAF_0383 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843199.1 456530 D 334390 CDS YP_001843200.1 184154860 6232435 458727..459554 1 NC_010610.1 hypothetical protein 459554 6232435 LAF_0384 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843200.1 458727 D 334390 CDS YP_001843201.1 184154861 6232436 459875..460465 1 NC_010610.1 extracellular surface protein 460465 6232436 LAF_0385 Lactobacillus fermentum IFO 3956 extracellular surface protein YP_001843201.1 459875 D 334390 CDS YP_001843202.1 184154862 6232437 complement(460862..461890) 1 NC_010610.1 hypothetical protein 461890 6232437 LAF_0386 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843202.1 460862 R 334390 CDS YP_001843203.1 184154863 6232438 462011..462916 1 NC_010610.1 transcriptional regulator 462916 6232438 LAF_0387 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843203.1 462011 D 334390 CDS YP_001843204.1 184154864 6232439 complement(464062..464901) 1 NC_010610.1 hypothetical protein 464901 6232439 LAF_0388 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843204.1 464062 R 334390 CDS YP_001843205.1 184154865 6232440 465064..465579 1 NC_010610.1 hypothetical protein 465579 6232440 LAF_0389 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843205.1 465064 D 334390 CDS YP_001843206.1 184154866 6232441 complement(465814..466755) 1 NC_010610.1 hypothetical protein 466755 6232441 LAF_0390 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843206.1 465814 R 334390 CDS YP_001843207.1 184154867 6232442 467232..468215 1 NC_010610.1 PTS system mannose-specific IIAB component 468215 6232442 LAF_0391 Lactobacillus fermentum IFO 3956 PTS system mannose-specific IIAB component YP_001843207.1 467232 D 334390 CDS YP_001843208.1 184154868 6232443 468235..469038 1 NC_010610.1 PTS system mannose-specific IIC component 469038 6232443 LAF_0392 Lactobacillus fermentum IFO 3956 PTS system mannose-specific IIC component YP_001843208.1 468235 D 334390 CDS YP_001843209.1 184154869 6232444 469067..469987 1 NC_010610.1 PTS system mannose-specific IID component 469987 6232444 LAF_0393 Lactobacillus fermentum IFO 3956 PTS system mannose-specific IID component YP_001843209.1 469067 D 334390 CDS YP_001843210.1 184154870 6232445 469988..470338 1 NC_010610.1 hypothetical protein 470338 6232445 LAF_0394 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843210.1 469988 D 334390 CDS YP_001843211.1 184154871 6232446 complement(470644..471864) 1 NC_010610.1 transposase 471864 6232446 LAF_0395 Lactobacillus fermentum IFO 3956 transposase YP_001843211.1 470644 R 334390 CDS YP_001843212.1 184154872 6232447 472277..473164 1 NC_010610.1 transposase 473164 6232447 LAF_0396 Lactobacillus fermentum IFO 3956 transposase YP_001843212.1 472277 D 334390 CDS YP_001843213.1 184154873 6232448 473796..474518 1 NC_010610.1 two-component response regulator 474518 6232448 LAF_0397 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001843213.1 473796 D 334390 CDS YP_001843214.1 184154874 6232449 474518..476020 1 NC_010610.1 two-component histidine kinase 476020 6232449 LAF_0398 Lactobacillus fermentum IFO 3956 two-component histidine kinase YP_001843214.1 474518 D 334390 CDS YP_001843215.1 184154875 6232450 476223..477083 1 NC_010610.1 sugar transport protein 477083 6232450 LAF_0399 Lactobacillus fermentum IFO 3956 sugar transport protein YP_001843215.1 476223 D 334390 CDS YP_001843216.1 184154876 6232451 477184..478353 1 NC_010610.1 xylose repressor 478353 6232451 LAF_0400 Lactobacillus fermentum IFO 3956 xylose repressor YP_001843216.1 477184 D 334390 CDS YP_001843217.1 184154877 6232452 complement(478437..479816) 1 NC_010610.1 D-xylose transport protein 479816 6232452 LAF_0401 Lactobacillus fermentum IFO 3956 D-xylose transport protein YP_001843217.1 478437 R 334390 CDS YP_001843218.1 184154878 6232453 480153..481502 1 NC_010610.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 481502 6232453 LAF_0402 Lactobacillus fermentum IFO 3956 xylose isomerase YP_001843218.1 480153 D 334390 CDS YP_001843219.1 184154879 6232454 481589..483094 1 NC_010610.1 xylose kinase 483094 6232454 LAF_0403 Lactobacillus fermentum IFO 3956 xylose kinase YP_001843219.1 481589 D 334390 CDS YP_001843220.1 184154880 6232455 complement(483680..484057) 1 NC_010610.1 hypothetical protein 484057 6232455 LAF_0404 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843220.1 483680 R 334390 CDS YP_001843221.1 184154881 6232456 484221..485876 1 NC_010610.1 xylosidase 485876 6232456 LAF_0405 Lactobacillus fermentum IFO 3956 xylosidase YP_001843221.1 484221 D 334390 CDS YP_001843222.1 184154882 6232457 485895..487133 1 NC_010610.1 hypothetical protein 487133 6232457 LAF_0406 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843222.1 485895 D 334390 CDS YP_001843223.1 184154883 6232458 complement(487215..488102) 1 NC_010610.1 transposase 488102 6232458 LAF_0407 Lactobacillus fermentum IFO 3956 transposase YP_001843223.1 487215 R 334390 CDS YP_001843224.1 184154884 6232459 complement(488099..488635) 1 NC_010610.1 transposase 488635 6232459 LAF_0408 Lactobacillus fermentum IFO 3956 transposase YP_001843224.1 488099 R 334390 CDS YP_001843225.1 184154885 6232460 489059..489622 1 NC_010610.1 alkyl hydroperoxide reductase 489622 6232460 LAF_0409 Lactobacillus fermentum IFO 3956 alkyl hydroperoxide reductase YP_001843225.1 489059 D 334390 CDS YP_001843226.1 184154886 6232461 489638..491302 1 NC_010610.1 thioredoxin reductase 491302 6232461 LAF_0410 Lactobacillus fermentum IFO 3956 thioredoxin reductase YP_001843226.1 489638 D 334390 CDS YP_001843227.1 184154887 6232462 491506..492792 1 NC_010610.1 glucose-6-phosphate isomerase 492792 6232462 LAF_0411 Lactobacillus fermentum IFO 3956 glucose-6-phosphate isomerase YP_001843227.1 491506 D 334390 CDS YP_001843228.1 184154888 6232463 complement(493157..493639) 1 NC_010610.1 hypothetical protein 493639 6232463 LAF_0412 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843228.1 493157 R 334390 CDS YP_001843229.1 184154889 6232464 complement(493657..494358) 1 NC_010610.1 hypothetical protein 494358 6232464 LAF_0413 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843229.1 493657 R 334390 CDS YP_001843230.1 184154890 6232465 complement(494391..495239) 1 NC_010610.1 aldo/keto reductase 495239 6232465 LAF_0414 Lactobacillus fermentum IFO 3956 aldo/keto reductase YP_001843230.1 494391 R 334390 CDS YP_001843231.1 184154891 6232466 495379..496155 1 NC_010610.1 triosephosphate isomerase 496155 6232466 LAF_0415 Lactobacillus fermentum IFO 3956 triosephosphate isomerase YP_001843231.1 495379 D 334390 CDS YP_001843232.1 184154892 6232467 complement(496263..496970) 1 NC_010610.1 alpha-acetolactate decarboxylase 496970 6232467 LAF_0416 Lactobacillus fermentum IFO 3956 alpha-acetolactate decarboxylase YP_001843232.1 496263 R 334390 CDS YP_001843233.1 184154893 6232395 complement(497222..497554) 1 NC_010610.1 hypothetical protein 497554 6232395 LAF_0417 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843233.1 497222 R 334390 CDS YP_001843234.1 184154894 6232396 498740..499201 1 NC_010610.1 hypothetical protein 499201 6232396 LAF_0418 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843234.1 498740 D 334390 CDS YP_001843235.1 184154895 6232470 499194..500945 1 NC_010610.1 multidrug ABC transporter ATP-binding and permease components 500945 6232470 LAF_0419 Lactobacillus fermentum IFO 3956 multidrug ABC transporter ATP-binding and permease components YP_001843235.1 499194 D 334390 CDS YP_001843236.1 184154896 6232471 500920..502761 1 NC_010610.1 multidrug ABC transporter ATP-binding and permease components 502761 6232471 LAF_0420 Lactobacillus fermentum IFO 3956 multidrug ABC transporter ATP-binding and permease components YP_001843236.1 500920 D 334390 CDS YP_001843237.1 184154897 6232472 502856..503875 1 NC_010610.1 hypothetical protein 503875 6232472 LAF_0421 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843237.1 502856 D 334390 CDS YP_001843238.1 184154898 6232473 503875..505362 1 NC_010610.1 cardiolipin synthase 505362 6232473 LAF_0422 Lactobacillus fermentum IFO 3956 cardiolipin synthase YP_001843238.1 503875 D 334390 CDS YP_001843239.1 184154899 6232474 complement(505669..505974) 1 NC_010610.1 hypothetical protein 505974 6232474 LAF_0423 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843239.1 505669 R 334390 CDS YP_001843240.1 184154900 6232475 complement(505986..506717) 1 NC_010610.1 cobyric acid synthase 506717 6232475 LAF_0424 Lactobacillus fermentum IFO 3956 cobyric acid synthase YP_001843240.1 505986 R 334390 CDS YP_001843241.1 184154901 6232476 complement(506717..508054) 1 NC_010610.1 UDP-N-acetylmuramyl tripeptide synthase 508054 6232476 LAF_0425 Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramyl tripeptide synthase YP_001843241.1 506717 R 334390 CDS YP_001843242.1 184154902 6232477 508333..508923 1 NC_010610.1 thymidine kinase 508923 6232477 LAF_0426 Lactobacillus fermentum IFO 3956 thymidine kinase YP_001843242.1 508333 D 334390 CDS YP_001843243.1 184154903 6232478 508929..510011 1 NC_010610.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 510011 prfA 6232478 prfA Lactobacillus fermentum IFO 3956 peptide chain release factor 1 YP_001843243.1 508929 D 334390 CDS YP_001843244.1 184154904 6232479 510004..510855 1 NC_010610.1 protoporphyrinogen oxidase 510855 6232479 LAF_0428 Lactobacillus fermentum IFO 3956 protoporphyrinogen oxidase YP_001843244.1 510004 D 334390 CDS YP_001843245.1 184154905 6232480 510874..511905 1 NC_010610.1 hypothetical protein 511905 6232480 LAF_0429 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843245.1 510874 D 334390 CDS YP_001843246.1 184154906 6232481 512029..513264 1 NC_010610.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 513264 glyA 6232481 glyA Lactobacillus fermentum IFO 3956 serine hydroxymethyltransferase YP_001843246.1 512029 D 334390 CDS YP_001843247.1 184154907 6232482 513404..514039 1 NC_010610.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 514039 upp 6232482 upp Lactobacillus fermentum IFO 3956 uracil phosphoribosyltransferase YP_001843247.1 513404 D 334390 CDS YP_001843248.1 184154908 6232483 514207..515352 1 NC_010610.1 hypothetical protein 515352 6232483 LAF_0432 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843248.1 514207 D 334390 CDS YP_001843249.1 184154909 6232484 515349..516122 1 NC_010610.1 hypothetical protein 516122 6232484 LAF_0433 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843249.1 515349 D 334390 CDS YP_001843250.1 184154910 6232485 516256..517524 1 NC_010610.1 uracil transport protein 517524 6232485 LAF_0434 Lactobacillus fermentum IFO 3956 uracil transport protein YP_001843250.1 516256 D 334390 CDS YP_001843251.1 184154911 6232486 517851..518561 1 NC_010610.1 F1F0-ATPase subunit A 518561 6232486 LAF_0435 Lactobacillus fermentum IFO 3956 F1F0-ATPase subunit A YP_001843251.1 517851 D 334390 CDS YP_001843252.1 184154912 6232487 518590..518802 1 NC_010610.1 F1F0-ATPase subunit C 518802 6232487 LAF_0436 Lactobacillus fermentum IFO 3956 F1F0-ATPase subunit C YP_001843252.1 518590 D 334390 CDS YP_001843253.1 184154913 6232488 518848..519354 1 NC_010610.1 F1F0-ATPase subunit B 519354 6232488 LAF_0437 Lactobacillus fermentum IFO 3956 F1F0-ATPase subunit B YP_001843253.1 518848 D 334390 CDS YP_001843254.1 184154914 6232489 519347..519892 1 NC_010610.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 519892 6232489 LAF_0438 Lactobacillus fermentum IFO 3956 F0F1 ATP synthase subunit delta YP_001843254.1 519347 D 334390 CDS YP_001843255.1 184154915 6232490 519920..521458 1 NC_010610.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 521458 6232490 LAF_0439 Lactobacillus fermentum IFO 3956 F0F1 ATP synthase subunit alpha YP_001843255.1 519920 D 334390 CDS YP_001843256.1 184154916 6232491 521490..522425 1 NC_010610.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 522425 6232491 LAF_0440 Lactobacillus fermentum IFO 3956 F0F1 ATP synthase subunit gamma YP_001843256.1 521490 D 334390 CDS YP_001843257.1 184154917 6232492 522448..523869 1 NC_010610.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 523869 6232492 LAF_0441 Lactobacillus fermentum IFO 3956 F0F1 ATP synthase subunit beta YP_001843257.1 522448 D 334390 CDS YP_001843258.1 184154918 6232493 523881..524303 1 NC_010610.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 524303 atpC 6232493 atpC Lactobacillus fermentum IFO 3956 F0F1 ATP synthase subunit epsilon YP_001843258.1 523881 D 334390 CDS YP_001843259.1 184154919 6232615 524539..524760 1 NC_010610.1 hypothetical protein 524760 6232615 LAF_0443 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843259.1 524539 D 334390 CDS YP_001843260.1 184154920 6232744 524767..525993 1 NC_010610.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 525993 6232744 LAF_0444 Lactobacillus fermentum IFO 3956 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001843260.1 524767 D 334390 CDS YP_001843261.1 184154921 6232745 526068..527084 1 NC_010610.1 rod shape-determining protein MreB 527084 6232745 LAF_0445 Lactobacillus fermentum IFO 3956 rod shape-determining protein MreB YP_001843261.1 526068 D 334390 CDS YP_001843262.1 184154922 6232746 527085..527327 1 NC_010610.1 hypothetical protein 527327 6232746 LAF_0446 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843262.1 527085 D 334390 CDS YP_001843263.1 184154923 6232747 527337..527561 1 NC_010610.1 hypothetical protein 527561 6232747 LAF_0447 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843263.1 527337 D 334390 CDS YP_001843264.1 184154924 6232748 527616..528818 1 NC_010610.1 rod-shape determining protein 528818 6232748 LAF_0448 Lactobacillus fermentum IFO 3956 rod-shape determining protein YP_001843264.1 527616 D 334390 CDS YP_001843265.1 184154925 6232749 528830..529117 1 NC_010610.1 glycine cleavage system H protein 529117 6232749 LAF_0449 Lactobacillus fermentum IFO 3956 glycine cleavage system H protein YP_001843265.1 528830 D 334390 CDS YP_001843266.1 184154926 6232750 529314..530291 1 NC_010610.1 hypothetical protein 530291 6232750 LAF_0450 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843266.1 529314 D 334390 CDS YP_001843267.1 184154927 6232751 530361..531494 1 NC_010610.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 531494 ddl 6232751 ddl Lactobacillus fermentum IFO 3956 D-alanyl-alanine synthetase A YP_001843267.1 530361 D 334390 CDS YP_001843268.1 184154928 6232752 531868..532758 1 NC_010610.1 hypothetical protein 532758 6232752 LAF_0452 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843268.1 531868 D 334390 CDS YP_001843269.1 184154929 6232753 complement(532814..533293) 1 NC_010610.1 hypothetical protein 533293 6232753 LAF_0453 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843269.1 532814 R 334390 CDS YP_001843270.1 184154930 6232754 complement(533372..533776) 1 NC_010610.1 hypothetical protein 533776 6232754 LAF_0454 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843270.1 533372 R 334390 CDS YP_001843271.1 184154931 6232755 complement(533938..535230) 1 NC_010610.1 recombination factor protein RarA 535230 6232755 LAF_0455 Lactobacillus fermentum IFO 3956 recombination factor protein RarA YP_001843271.1 533938 R 334390 CDS YP_001843272.1 184154932 6232756 complement(535227..535700) 1 NC_010610.1 hypothetical protein 535700 6232756 LAF_0456 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843272.1 535227 R 334390 CDS YP_001843273.1 184154933 6232757 complement(535790..536200) 1 NC_010610.1 hypothetical protein 536200 6232757 LAF_0457 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843273.1 535790 R 334390 CDS YP_001843274.1 184154934 6232758 complement(536237..536983) 1 NC_010610.1 hypothetical protein 536983 6232758 LAF_0458 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843274.1 536237 R 334390 CDS YP_001843275.1 184154935 6232759 complement(537219..538064) 1 NC_010610.1 hypothetical protein 538064 6232759 LAF_0459 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843275.1 537219 R 334390 CDS YP_001843276.1 184154936 6232760 complement(539413..540534) 1 NC_010610.1 integrase 540534 6232760 LAF_0460 Lactobacillus fermentum IFO 3956 integrase YP_001843276.1 539413 R 334390 CDS YP_001843277.1 184154937 6232761 542998..543198 1 NC_010610.1 hypothetical protein 543198 6232761 LAF_0461 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843277.1 542998 D 334390 CDS YP_001843278.1 184154938 6232762 543201..543686 1 NC_010610.1 hypothetical protein 543686 6232762 LAF_0462 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843278.1 543201 D 334390 CDS YP_001843279.1 184154939 6232763 543711..544391 1 NC_010610.1 hypothetical protein 544391 6232763 LAF_0463 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843279.1 543711 D 334390 CDS YP_001843280.1 184154940 6232764 544384..545730 1 NC_010610.1 phage helicase 545730 6232764 LAF_0464 Lactobacillus fermentum IFO 3956 phage helicase YP_001843280.1 544384 D 334390 CDS YP_001843281.1 184154941 6232765 545750..546310 1 NC_010610.1 hypothetical protein 546310 6232765 LAF_0465 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843281.1 545750 D 334390 CDS YP_001843282.1 184154942 6232766 546376..548685 1 NC_010610.1 phage primase 548685 6232766 LAF_0466 Lactobacillus fermentum IFO 3956 phage primase YP_001843282.1 546376 D 334390 CDS YP_001843283.1 184154943 6232767 548986..549330 1 NC_010610.1 hypothetical protein 549330 6232767 LAF_0467 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843283.1 548986 D 334390 CDS YP_001843284.1 184154944 6232768 550838..551746 1 NC_010610.1 hypothetical protein 551746 6232768 LAF_0468 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843284.1 550838 D 334390 CDS YP_001843285.1 184154945 6232769 552537..552998 1 NC_010610.1 phage terminase 552998 6232769 LAF_0469 Lactobacillus fermentum IFO 3956 phage terminase YP_001843285.1 552537 D 334390 CDS YP_001843286.1 184154946 6232770 552995..554899 1 NC_010610.1 phage terminase 554899 6232770 LAF_0470 Lactobacillus fermentum IFO 3956 phage terminase YP_001843286.1 552995 D 334390 CDS YP_001843287.1 184154947 6232771 554914..555096 1 NC_010610.1 hypothetical protein 555096 6232771 LAF_0471 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843287.1 554914 D 334390 CDS YP_001843288.1 184154948 6232772 555096..556316 1 NC_010610.1 phage portal protein 556316 6232772 LAF_0472 Lactobacillus fermentum IFO 3956 phage portal protein YP_001843288.1 555096 D 334390 CDS YP_001843289.1 184154949 6232773 556765..558027 1 NC_010610.1 phage capsid protein 558027 6232773 LAF_0473 Lactobacillus fermentum IFO 3956 phage capsid protein YP_001843289.1 556765 D 334390 CDS YP_001843290.1 184154950 6232774 558048..558350 1 NC_010610.1 hypothetical protein 558350 6232774 LAF_0474 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843290.1 558048 D 334390 CDS YP_001843291.1 184154951 6232775 558569..559120 1 NC_010610.1 hypothetical protein 559120 6232775 LAF_0475 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843291.1 558569 D 334390 CDS YP_001843292.1 184154952 6232776 559503..560126 1 NC_010610.1 hypothetical protein 560126 6232776 LAF_0476 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843292.1 559503 D 334390 CDS YP_001843293.1 184154953 6232777 560193..560522 1 NC_010610.1 hypothetical protein 560522 6232777 LAF_0477 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843293.1 560193 D 334390 CDS YP_001843294.1 184154954 6232778 560727..564926 1 NC_010610.1 hypothetical protein 564926 6232778 LAF_0478 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843294.1 560727 D 334390 CDS YP_001843295.1 184154955 6232779 564989..565828 1 NC_010610.1 hypothetical protein 565828 6232779 LAF_0479 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843295.1 564989 D 334390 CDS YP_001843296.1 184154956 6232780 565835..566875 1 NC_010610.1 hypothetical protein 566875 6232780 LAF_0480 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843296.1 565835 D 334390 CDS YP_001843297.1 184154957 6232781 566872..568434 1 NC_010610.1 hypothetical protein 568434 6232781 LAF_0481 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843297.1 566872 D 334390 CDS YP_001843298.1 184154958 6232782 568421..571915 1 NC_010610.1 hypothetical protein 571915 6232782 LAF_0482 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843298.1 568421 D 334390 CDS YP_001843299.1 184154959 6232783 571931..572119 1 NC_010610.1 hypothetical protein 572119 6232783 LAF_0483 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843299.1 571931 D 334390 CDS YP_001843300.1 184154960 6232784 572122..572379 1 NC_010610.1 hypothetical protein 572379 6232784 LAF_0484 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843300.1 572122 D 334390 CDS YP_001843301.1 184154961 6232785 573257..573745 1 NC_010610.1 hypothetical protein 573745 6232785 LAF_0485 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843301.1 573257 D 334390 CDS YP_001843302.1 184154962 6232786 574530..575693 1 NC_010610.1 hypothetical protein 575693 6232786 LAF_0486 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843302.1 574530 D 334390 CDS YP_001843303.1 184154963 6232787 complement(575895..576500) 1 NC_010610.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 576500 rpsD 6232787 rpsD Lactobacillus fermentum IFO 3956 30S ribosomal protein S4 YP_001843303.1 575895 R 334390 CDS YP_001843304.1 184154964 6232788 576830..578539 1 NC_010610.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 578539 6232788 LAF_0488 Lactobacillus fermentum IFO 3956 septation ring formation regulator EzrA YP_001843304.1 576830 D 334390 CDS YP_001843305.1 184154965 6232789 578720..579868 1 NC_010610.1 cysteine desulfurase 579868 6232789 LAF_0489 Lactobacillus fermentum IFO 3956 cysteine desulfurase YP_001843305.1 578720 D 334390 CDS YP_001843306.1 184154966 6232790 579881..581101 1 NC_010610.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 581101 6232790 LAF_0490 Lactobacillus fermentum IFO 3956 thiamine biosynthesis protein ThiI YP_001843306.1 579881 D 334390 CDS YP_001843307.1 184154967 6232791 581484..582785 1 NC_010610.1 gluconate symporter 582785 6232791 LAF_0491 Lactobacillus fermentum IFO 3956 gluconate symporter YP_001843307.1 581484 D 334390 CDS YP_001843308.1 184154968 6232792 582798..583940 1 NC_010610.1 glycerate kinase 583940 6232792 LAF_0492 Lactobacillus fermentum IFO 3956 glycerate kinase YP_001843308.1 582798 D 334390 CDS YP_001843309.1 184154969 6232793 complement(584202..584894) 1 NC_010610.1 transposase 584894 6232793 LAF_0493 Lactobacillus fermentum IFO 3956 transposase YP_001843309.1 584202 R 334390 CDS YP_001843310.1 184154970 6232794 586745..587149 1 NC_010610.1 hypothetical protein 587149 6232794 LAF_0494 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843310.1 586745 D 334390 CDS YP_001843311.1 184154971 6232795 587441..587920 1 NC_010610.1 hypothetical protein 587920 6232795 LAF_0495 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843311.1 587441 D 334390 CDS YP_001843312.1 184154972 6232796 588072..588566 1 NC_010610.1 thiol peroxidase 588566 6232796 LAF_0496 Lactobacillus fermentum IFO 3956 thiol peroxidase YP_001843312.1 588072 D 334390 CDS YP_001843313.1 184154973 6232797 588872..591526 1 NC_010610.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 591526 valS 6232797 valS Lactobacillus fermentum IFO 3956 valyl-tRNA synthetase YP_001843313.1 588872 D 334390 CDS YP_001843314.1 184154974 6232798 591635..592957 1 NC_010610.1 folylpolyglutamate synthase 592957 6232798 LAF_0498 Lactobacillus fermentum IFO 3956 folylpolyglutamate synthase YP_001843314.1 591635 D 334390 CDS YP_001843315.1 184154975 6232799 593010..593636 1 NC_010610.1 hypothetical protein 593636 6232799 LAF_0499 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843315.1 593010 D 334390 CDS YP_001843316.1 184154976 6232800 593799..594809 1 NC_010610.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 594809 6232800 LAF_0500 Lactobacillus fermentum IFO 3956 rod shape-determining protein MreB YP_001843316.1 593799 D 334390 CDS YP_001843317.1 184154977 6232801 594928..595779 1 NC_010610.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 595779 6232801 LAF_0501 Lactobacillus fermentum IFO 3956 rod shape-determining protein MreC YP_001843317.1 594928 D 334390 CDS YP_001843318.1 184154978 6232802 595795..596328 1 NC_010610.1 cell shape determining protein MreD 596328 6232802 LAF_0502 Lactobacillus fermentum IFO 3956 cell shape determining protein MreD YP_001843318.1 595795 D 334390 CDS YP_001843319.1 184154979 6232803 596805..597452 1 NC_010610.1 glutamine ABC transporter permease 597452 6232803 LAF_0503 Lactobacillus fermentum IFO 3956 glutamine ABC transporter permease YP_001843319.1 596805 D 334390 CDS YP_001843320.1 184154980 6232804 597467..598111 1 NC_010610.1 glutamine ABC transporter ATP-binding protein 598111 6232804 LAF_0504 Lactobacillus fermentum IFO 3956 glutamine ABC transporter ATP-binding protein YP_001843320.1 597467 D 334390 CDS YP_001843321.1 184154981 6232805 598127..598984 1 NC_010610.1 glutamine ABC transporter substrate-binding protein 598984 6232805 LAF_0505 Lactobacillus fermentum IFO 3956 glutamine ABC transporter substrate-binding protein YP_001843321.1 598127 D 334390 CDS YP_001843322.1 184154982 6232806 599240..600514 1 NC_010610.1 hypothetical protein 600514 6232806 LAF_0506 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843322.1 599240 D 334390 CDS YP_001843323.1 184154983 6232807 600501..601802 1 NC_010610.1 zinc-dependent protease 601802 6232807 LAF_0507 Lactobacillus fermentum IFO 3956 zinc-dependent protease YP_001843323.1 600501 D 334390 CDS YP_001843324.1 184154984 6232808 601899..602903 1 NC_010610.1 hypothetical protein 602903 6232808 LAF_0508 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843324.1 601899 D 334390 CDS YP_001843325.1 184154985 6232809 602919..603503 1 NC_010610.1 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase 603503 6232809 LAF_0509 Lactobacillus fermentum IFO 3956 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase YP_001843325.1 602919 D 334390 CDS YP_001843326.1 184154986 6232810 603580..604824 1 NC_010610.1 competence-damage protein 604824 6232810 LAF_0510 Lactobacillus fermentum IFO 3956 competence-damage protein YP_001843326.1 603580 D 334390 CDS YP_001843327.1 184154987 6232811 604918..605979 1 NC_010610.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 605979 recA 6232811 recA Lactobacillus fermentum IFO 3956 recombinase A YP_001843327.1 604918 D 334390 CDS YP_001843328.1 184154988 6232812 606374..607933 1 NC_010610.1 hypothetical protein 607933 6232812 LAF_0512 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843328.1 606374 D 334390 CDS YP_001843329.1 184154989 6232813 608027..610669 1 NC_010610.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 610669 6232813 LAF_0513 Lactobacillus fermentum IFO 3956 DNA mismatch repair protein MutS YP_001843329.1 608027 D 334390 CDS YP_001843330.1 184154990 6232814 610686..612629 1 NC_010610.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 612629 mutL 6232814 mutL Lactobacillus fermentum IFO 3956 DNA mismatch repair protein YP_001843330.1 610686 D 334390 CDS YP_001843331.1 184154991 6232815 612683..613285 1 NC_010610.1 holliday junction DNA helicase RuvA 613285 6232815 LAF_0515 Lactobacillus fermentum IFO 3956 holliday junction DNA helicase RuvA YP_001843331.1 612683 D 334390 CDS YP_001843332.1 184154992 6232816 613296..614315 1 NC_010610.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 614315 ruvB 6232816 ruvB Lactobacillus fermentum IFO 3956 Holliday junction DNA helicase RuvB YP_001843332.1 613296 D 334390 CDS YP_001843333.1 184154993 6232817 614296..615246 1 NC_010610.1 hypothetical protein 615246 6232817 LAF_0517 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843333.1 614296 D 334390 CDS YP_001843334.1 184154994 6232818 615317..615739 1 NC_010610.1 hypothetical protein 615739 6232818 LAF_0518 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843334.1 615317 D 334390 CDS YP_001843335.1 184154995 6232819 615965..616924 1 NC_010610.1 hypothetical protein 616924 6232819 LAF_0519 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843335.1 615965 D 334390 CDS YP_001843336.1 184154996 6232820 616924..618306 1 NC_010610.1 ATP-dependent RNA helicase 618306 6232820 LAF_0520 Lactobacillus fermentum IFO 3956 ATP-dependent RNA helicase YP_001843336.1 616924 D 334390 CDS YP_001843337.1 184154997 6232821 618559..621207 1 NC_010610.1 alanyl-tRNA synthase 621207 6232821 LAF_0521 Lactobacillus fermentum IFO 3956 alanyl-tRNA synthase YP_001843337.1 618559 D 334390 CDS YP_001843338.1 184154998 6232822 621417..621680 1 NC_010610.1 hypothetical protein 621680 6232822 LAF_0522 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843338.1 621417 D 334390 CDS YP_001843339.1 184154999 6232823 621680..622117 1 NC_010610.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 622117 6232823 LAF_0523 Lactobacillus fermentum IFO 3956 Holliday junction resolvase-like protein YP_001843339.1 621680 D 334390 CDS YP_001843340.1 184155000 6232824 622129..622434 1 NC_010610.1 hypothetical protein 622434 6232824 LAF_0524 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843340.1 622129 D 334390 CDS YP_001843341.1 184155001 6231863 complement(622557..623462) 1 NC_010610.1 ribonuclease HIII 623462 6231863 LAF_0525 Lactobacillus fermentum IFO 3956 ribonuclease HIII YP_001843341.1 622557 R 334390 CDS YP_001843342.1 184155002 6233632 623550..624077 1 NC_010610.1 hypothetical protein 624077 6233632 LAF_0526 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843342.1 623550 D 334390 CDS YP_001843343.1 184155003 6233633 624095..626470 1 NC_010610.1 DNA mismatch repair protein MutS2 626470 6233633 LAF_0527 Lactobacillus fermentum IFO 3956 DNA mismatch repair protein MutS2 YP_001843343.1 624095 D 334390 CDS YP_001843344.1 184155004 6233634 626543..626857 1 NC_010610.1 thioredoxin 626857 6233634 LAF_0528 Lactobacillus fermentum IFO 3956 thioredoxin YP_001843344.1 626543 D 334390 CDS YP_001843345.1 184155005 6233635 627003..628265 1 NC_010610.1 chloride channel protein 628265 6233635 LAF_0529 Lactobacillus fermentum IFO 3956 chloride channel protein YP_001843345.1 627003 D 334390 CDS YP_001843346.1 184155006 6233636 complement(628367..628909) 1 NC_010610.1 hypothetical protein 628909 6233636 LAF_0530 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843346.1 628367 R 334390 CDS YP_001843347.1 184155007 6233637 629069..629875 1 NC_010610.1 glutamate racemase 629875 6233637 LAF_0531 Lactobacillus fermentum IFO 3956 glutamate racemase YP_001843347.1 629069 D 334390 CDS YP_001843348.1 184155008 6233638 629877..630470 1 NC_010610.1 xanthosine triphosphate pyrophosphatase 630470 6233638 LAF_0532 Lactobacillus fermentum IFO 3956 xanthosine triphosphate pyrophosphatase YP_001843348.1 629877 D 334390 CDS YP_001843349.1 184155009 6233639 630470..630982 1 NC_010610.1 hypothetical protein 630982 6233639 LAF_0533 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843349.1 630470 D 334390 CDS YP_001843350.1 184155010 6233640 complement(631221..632063) 1 NC_010610.1 hypothetical protein 632063 6233640 LAF_0534 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843350.1 631221 R 334390 CDS YP_001843351.1 184155011 6233641 complement(632053..632931) 1 NC_010610.1 hypothetical protein 632931 6233641 LAF_0535 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843351.1 632053 R 334390 CDS YP_001843352.1 184155012 6233642 633061..633474 1 NC_010610.1 hypothetical protein 633474 6233642 LAF_0536 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843352.1 633061 D 334390 CDS YP_001843353.1 184155013 6233643 633486..633917 1 NC_010610.1 hypothetical protein 633917 6233643 LAF_0537 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843353.1 633486 D 334390 CDS YP_001843354.1 184155014 6233644 complement(633999..635105) 1 NC_010610.1 Xaa-Pro dipeptidase 635105 6233644 LAF_0538 Lactobacillus fermentum IFO 3956 Xaa-Pro dipeptidase YP_001843354.1 633999 R 334390 CDS YP_001843355.1 184155015 6233645 635263..636285 1 NC_010610.1 catabolite control protein 636285 6233645 LAF_0539 Lactobacillus fermentum IFO 3956 catabolite control protein YP_001843355.1 635263 D 334390 CDS YP_001843356.1 184155016 6233646 636303..637160 1 NC_010610.1 hypothetical protein 637160 6233646 LAF_0540 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843356.1 636303 D 334390 CDS YP_001843357.1 184155017 6233647 637227..637970 1 NC_010610.1 hypothetical protein 637970 6233647 LAF_0541 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843357.1 637227 D 334390 CDS YP_001843358.1 184155018 6233648 638221..639261 1 NC_010610.1 hypothetical protein 639261 6233648 LAF_0542 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843358.1 638221 D 334390 CDS YP_001843359.1 184155019 6233649 639392..641374 1 NC_010610.1 hypothetical protein 641374 6233649 LAF_0543 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843359.1 639392 D 334390 CDS YP_001843360.1 184155020 6233650 641566..642525 1 NC_010610.1 competence protein 642525 6233650 LAF_0544 Lactobacillus fermentum IFO 3956 competence protein YP_001843360.1 641566 D 334390 CDS YP_001843361.1 184155021 6233651 642563..643510 1 NC_010610.1 competence protein 643510 6233651 LAF_0545 Lactobacillus fermentum IFO 3956 competence protein YP_001843361.1 642563 D 334390 CDS YP_001843362.1 184155022 6233652 643510..643827 1 NC_010610.1 competence protein 643827 6233652 LAF_0546 Lactobacillus fermentum IFO 3956 competence protein YP_001843362.1 643510 D 334390 CDS YP_001843363.1 184155023 6233653 643805..644290 1 NC_010610.1 hypothetical protein 644290 6233653 LAF_0547 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843363.1 643805 D 334390 CDS YP_001843364.1 184155024 6233654 644298..644546 1 NC_010610.1 hypothetical protein 644546 6233654 LAF_0548 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843364.1 644298 D 334390 CDS YP_001843365.1 184155025 6233655 645413..646282 1 NC_010610.1 hypothetical protein 646282 6233655 LAF_0549 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843365.1 645413 D 334390 CDS YP_001843366.1 184155026 6233656 646296..647492 1 NC_010610.1 acetate kinase 647492 6233656 LAF_0550 Lactobacillus fermentum IFO 3956 acetate kinase YP_001843366.1 646296 D 334390 CDS YP_001843367.1 184155027 6233657 647549..648172 1 NC_010610.1 phosphoesterase 648172 6233657 LAF_0551 Lactobacillus fermentum IFO 3956 phosphoesterase YP_001843367.1 647549 D 334390 CDS YP_001843368.1 184155028 6233658 648199..648735 1 NC_010610.1 hypothetical protein 648735 6233658 LAF_0552 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843368.1 648199 D 334390 CDS YP_001843369.1 184155029 6233659 648735..649517 1 NC_010610.1 sugar phosphatase 649517 6233659 LAF_0553 Lactobacillus fermentum IFO 3956 sugar phosphatase YP_001843369.1 648735 D 334390 CDS YP_001843370.1 184155030 6233660 complement(650119..650769) 1 NC_010610.1 hypothetical protein 650769 6233660 LAF_0554 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843370.1 650119 R 334390 CDS YP_001843371.1 184155031 6233551 complement(658077..658571) 1 NC_010610.1 hypothetical protein 658571 6233551 LAF_0555 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843371.1 658077 R 334390 CDS YP_001843372.1 184155032 6233662 658898..659302 1 NC_010610.1 hypothetical protein 659302 6233662 LAF_0556 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843372.1 658898 D 334390 CDS YP_001843373.1 184155033 6233663 659439..660152 1 NC_010610.1 competence negative regulator 660152 6233663 LAF_0557 Lactobacillus fermentum IFO 3956 competence negative regulator YP_001843373.1 659439 D 334390 CDS YP_001843374.1 184155034 6233664 660205..661227 1 NC_010610.1 competence protein 661227 6233664 LAF_0558 Lactobacillus fermentum IFO 3956 competence protein YP_001843374.1 660205 D 334390 CDS YP_001843375.1 184155035 6233665 complement(661558..662184) 1 NC_010610.1 hypothetical protein 662184 6233665 LAF_0559 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843375.1 661558 R 334390 CDS YP_001843376.1 184155036 6233666 662347..663027 1 NC_010610.1 GTP pyrophosphokinase 663027 6233666 LAF_0560 Lactobacillus fermentum IFO 3956 GTP pyrophosphokinase YP_001843376.1 662347 D 334390 CDS YP_001843377.1 184155037 6233667 663042..663851 1 NC_010610.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 663851 ppnK 6233667 ppnK Lactobacillus fermentum IFO 3956 inorganic polyphosphate/ATP-NAD kinase YP_001843377.1 663042 D 334390 CDS YP_001843378.1 184155038 6233668 663851..664741 1 NC_010610.1 pseudouridine synthase 664741 6233668 LAF_0562 Lactobacillus fermentum IFO 3956 pseudouridine synthase YP_001843378.1 663851 D 334390 CDS YP_001843379.1 184155039 6233669 complement(664798..665826) 1 NC_010610.1 hypothetical protein 665826 6233669 LAF_0563 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843379.1 664798 R 334390 CDS YP_001843380.1 184155040 6233670 665938..666792 1 NC_010610.1 rRNA methyltransferase 666792 6233670 LAF_0564 Lactobacillus fermentum IFO 3956 rRNA methyltransferase YP_001843380.1 665938 D 334390 CDS YP_001843381.1 184155041 6233671 666964..667470 1 NC_010610.1 rRNA methyltransferase 667470 6233671 LAF_0565 Lactobacillus fermentum IFO 3956 rRNA methyltransferase YP_001843381.1 666964 D 334390 CDS YP_001843382.1 184155042 6233672 667480..669789 1 NC_010610.1 cell division protein 669789 6233672 LAF_0566 Lactobacillus fermentum IFO 3956 cell division protein YP_001843382.1 667480 D 334390 CDS YP_001843383.1 184155043 6233673 670117..670503 1 NC_010610.1 hypothetical protein 670503 6233673 LAF_0567 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843383.1 670117 D 334390 CDS YP_001843384.1 184155044 6233674 670645..671076 1 NC_010610.1 hypothetical protein 671076 6233674 LAF_0568 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843384.1 670645 D 334390 CDS YP_001843385.1 184155045 6233675 671091..672035 1 NC_010610.1 S-adenosyl-methyltransferase MraW 672035 mraW 6233675 mraW Lactobacillus fermentum IFO 3956 S-adenosyl-methyltransferase MraW YP_001843385.1 671091 D 334390 CDS YP_001843386.1 184155046 6233676 672045..672422 1 NC_010610.1 cell division protein 672422 6233676 LAF_0570 Lactobacillus fermentum IFO 3956 cell division protein YP_001843386.1 672045 D 334390 CDS YP_001843387.1 184155047 6233677 672422..674578 1 NC_010610.1 penicillin binding protein 2B 674578 6233677 LAF_0571 Lactobacillus fermentum IFO 3956 penicillin binding protein 2B YP_001843387.1 672422 D 334390 CDS YP_001843388.1 184155048 6233678 674615..675574 1 NC_010610.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 675574 mraY 6233678 mraY Lactobacillus fermentum IFO 3956 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001843388.1 674615 D 334390 CDS YP_001843389.1 184155049 6233679 675602..676978 1 NC_010610.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 676978 murD 6233679 murD Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001843389.1 675602 D 334390 CDS YP_001843390.1 184155050 6233680 676978..678084 1 NC_010610.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 678084 murG 6233680 murG Lactobacillus fermentum IFO 3956 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001843390.1 676978 D 334390 CDS YP_001843391.1 184155051 6233681 678101..678946 1 NC_010610.1 cell division initiation protein FtsQ 678946 6233681 LAF_0575 Lactobacillus fermentum IFO 3956 cell division initiation protein FtsQ YP_001843391.1 678101 D 334390 CDS YP_001843392.1 184155052 6233682 679090..680472 1 NC_010610.1 cell division protein FtsA 680472 6233682 LAF_0576 Lactobacillus fermentum IFO 3956 cell division protein FtsA YP_001843392.1 679090 D 334390 CDS YP_001843393.1 184155053 6233683 680499..681788 1 NC_010610.1 cell division protein FtsZ 681788 6233683 LAF_0577 Lactobacillus fermentum IFO 3956 cell division protein FtsZ YP_001843393.1 680499 D 334390 CDS YP_001843394.1 184155054 6233684 681827..682297 1 NC_010610.1 hypothetical protein 682297 6233684 LAF_0578 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843394.1 681827 D 334390 CDS YP_001843395.1 184155055 6233685 682294..682572 1 NC_010610.1 hypothetical protein 682572 6233685 LAF_0579 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843395.1 682294 D 334390 CDS YP_001843396.1 184155056 6233686 682580..683368 1 NC_010610.1 hypothetical protein 683368 6233686 LAF_0580 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843396.1 682580 D 334390 CDS YP_001843397.1 184155057 6233687 683393..684079 1 NC_010610.1 cell division initiation protein 684079 6233687 LAF_0581 Lactobacillus fermentum IFO 3956 cell division initiation protein YP_001843397.1 683393 D 334390 CDS YP_001843398.1 184155058 6233688 684373..687165 1 NC_010610.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 687165 ileS 6233688 ileS Lactobacillus fermentum IFO 3956 isoleucyl-tRNA synthetase YP_001843398.1 684373 D 334390 CDS YP_001843399.1 184155059 6233689 687307..687519 1 NC_010610.1 cold shock protein 687519 6233689 LAF_0583 Lactobacillus fermentum IFO 3956 cold shock protein YP_001843399.1 687307 D 334390 CDS YP_001843400.1 184155060 6233690 687521..688069 1 NC_010610.1 ADP-ribose pyrophosphatase 688069 6233690 LAF_0584 Lactobacillus fermentum IFO 3956 ADP-ribose pyrophosphatase YP_001843400.1 687521 D 334390 CDS YP_001843401.1 184155061 6232616 688070..688306 1 NC_010610.1 hypothetical protein 688306 6232616 LAF_0585 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843401.1 688070 D 334390 CDS YP_001843402.1 184155062 6231782 688319..689026 1 NC_010610.1 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase 689026 6231782 LAF_0586 Lactobacillus fermentum IFO 3956 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase YP_001843402.1 688319 D 334390 CDS YP_001843403.1 184155063 6231783 689026..689370 1 NC_010610.1 hypothetical protein 689370 6231783 LAF_0587 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843403.1 689026 D 334390 CDS YP_001843404.1 184155064 6231784 689477..690610 1 NC_010610.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 690610 mnmA 6231784 mnmA Lactobacillus fermentum IFO 3956 tRNA-specific 2-thiouridylase MnmA YP_001843404.1 689477 D 334390 CDS YP_001843405.1 184155065 6231785 691088..692743 1 NC_010610.1 hypothetical protein 692743 6231785 LAF_0589 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843405.1 691088 D 334390 CDS YP_001843406.1 184155066 6231786 692851..693783 1 NC_010610.1 L-2-hydroxyisocaproate dehydrogenase 693783 6231786 LAF_0590 Lactobacillus fermentum IFO 3956 L-2-hydroxyisocaproate dehydrogenase YP_001843406.1 692851 D 334390 CDS YP_001843407.1 184155067 6231787 693992..694648 1 NC_010610.1 phosphoglycerate mutase 694648 6231787 LAF_0591 Lactobacillus fermentum IFO 3956 phosphoglycerate mutase YP_001843407.1 693992 D 334390 CDS YP_001843408.1 184155068 6231788 694663..695352 1 NC_010610.1 hypothetical protein 695352 6231788 LAF_0592 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843408.1 694663 D 334390 CDS YP_001843409.1 184155069 6231789 695353..697899 1 NC_010610.1 exodeoxyribonuclease V subunit alpha 697899 6231789 LAF_0593 Lactobacillus fermentum IFO 3956 exodeoxyribonuclease V subunit alpha YP_001843409.1 695353 D 334390 CDS YP_001843410.1 184155070 6231790 697970..698956 1 NC_010610.1 ribose-phosphate pyrophosphokinase 698956 6231790 LAF_0594 Lactobacillus fermentum IFO 3956 ribose-phosphate pyrophosphokinase YP_001843410.1 697970 D 334390 CDS YP_001843411.1 184155071 6231791 complement(698989..699417) 1 NC_010610.1 hypothetical protein 699417 6231791 LAF_0595 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843411.1 698989 R 334390 CDS YP_001843412.1 184155072 6231792 complement(699641..700615) 1 NC_010610.1 transcription regulator 700615 6231792 LAF_0596 Lactobacillus fermentum IFO 3956 transcription regulator YP_001843412.1 699641 R 334390 CDS YP_001843413.1 184155073 6231793 complement(700875..701090) 1 NC_010610.1 hypothetical protein 701090 6231793 LAF_0597 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843413.1 700875 R 334390 CDS YP_001843414.1 184155074 6231794 701205..701663 1 NC_010610.1 hypothetical protein 701663 6231794 LAF_0598 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843414.1 701205 D 334390 CDS YP_001843415.1 184155075 6231795 complement(701774..702343) 1 NC_010610.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 702343 def 6231795 def Lactobacillus fermentum IFO 3956 peptide deformylase YP_001843415.1 701774 R 334390 CDS YP_001843416.1 184155076 6231796 702471..702758 1 NC_010610.1 hypothetical protein 702758 6231796 LAF_0600 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843416.1 702471 D 334390 CDS YP_001843417.1 184155077 6231797 702762..703526 1 NC_010610.1 myo-inositol-1(or 4)-monophosphatase 703526 6231797 LAF_0601 Lactobacillus fermentum IFO 3956 myo-inositol-1(or 4)-monophosphatase YP_001843417.1 702762 D 334390 CDS YP_001843418.1 184155078 6231798 703604..705451 1 NC_010610.1 GTP-binding protein 705451 6231798 LAF_0602 Lactobacillus fermentum IFO 3956 GTP-binding protein YP_001843418.1 703604 D 334390 CDS YP_001843419.1 184155079 6231799 705554..706753 1 NC_010610.1 cell division protein 706753 6231799 LAF_0603 Lactobacillus fermentum IFO 3956 cell division protein YP_001843419.1 705554 D 334390 CDS YP_001843420.1 184155080 6231800 706740..707036 1 NC_010610.1 hypothetical protein 707036 6231800 LAF_0604 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843420.1 706740 D 334390 CDS YP_001843421.1 184155081 6231801 707039..707599 1 NC_010610.1 N6-adenine-specific methylase 707599 6231801 LAF_0605 Lactobacillus fermentum IFO 3956 N6-adenine-specific methylase YP_001843421.1 707039 D 334390 CDS YP_001843422.1 184155082 6231802 707604..708125 1 NC_010610.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 708125 coaD 6231802 coaD Lactobacillus fermentum IFO 3956 phosphopantetheine adenylyltransferase YP_001843422.1 707604 D 334390 CDS YP_001843423.1 184155083 6231803 708109..709158 1 NC_010610.1 hypothetical protein 709158 6231803 LAF_0607 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843423.1 708109 D 334390 CDS YP_001843424.1 184155084 6231804 709224..709898 1 NC_010610.1 competence protein 709898 6231804 LAF_0608 Lactobacillus fermentum IFO 3956 competence protein YP_001843424.1 709224 D 334390 CDS YP_001843425.1 184155085 6231805 709953..710432 1 NC_010610.1 competence protein 710432 6231805 LAF_0609 Lactobacillus fermentum IFO 3956 competence protein YP_001843425.1 709953 D 334390 CDS YP_001843426.1 184155086 6231806 710433..712670 1 NC_010610.1 competence protein 712670 6231806 LAF_0610 Lactobacillus fermentum IFO 3956 competence protein YP_001843426.1 710433 D 334390 CDS YP_001843427.1 184155087 6231807 712688..713716 1 NC_010610.1 DNA-directed DNA polymerase III subunit delta 713716 6231807 LAF_0611 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase III subunit delta YP_001843427.1 712688 D 334390 CDS YP_001843428.1 184155088 6231808 complement(713905..714903) 1 NC_010610.1 transposase 714903 6231808 LAF_0612 Lactobacillus fermentum IFO 3956 transposase YP_001843428.1 713905 R 334390 CDS YP_001843429.1 184155089 6231809 complement(715077..715331) 1 NC_010610.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 715331 rpsT 6231809 rpsT Lactobacillus fermentum IFO 3956 30S ribosomal protein S20 YP_001843429.1 715077 R 334390 CDS YP_001843430.1 184155090 6231810 715577..715846 1 NC_010610.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 715846 rpsO 6231810 rpsO Lactobacillus fermentum IFO 3956 30S ribosomal protein S15 YP_001843430.1 715577 D 334390 CDS YP_001843431.1 184155091 6231811 716003..717373 1 NC_010610.1 hypothetical protein 717373 6231811 LAF_0615 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843431.1 716003 D 334390 CDS YP_001843432.1 184155092 6231812 717544..719343 1 NC_010610.1 metallo-beta-lactamase superfamily protein 719343 6231812 LAF_0616 Lactobacillus fermentum IFO 3956 metallo-beta-lactamase superfamily protein YP_001843432.1 717544 D 334390 CDS YP_001843433.1 184155093 6231813 719364..720329 1 NC_010610.1 hypothetical protein 720329 6231813 LAF_0617 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843433.1 719364 D 334390 CDS YP_001843434.1 184155094 6231814 720510..721700 1 NC_010610.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 721700 6231814 LAF_0618 Lactobacillus fermentum IFO 3956 elongation factor Tu YP_001843434.1 720510 D 334390 CDS YP_001843435.1 184155095 6231815 721871..723178 1 NC_010610.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 723178 tig 6231815 tig Lactobacillus fermentum IFO 3956 trigger factor YP_001843435.1 721871 D 334390 CDS YP_001843436.1 184155096 6231816 723329..724579 1 NC_010610.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 724579 clpX 6231816 clpX Lactobacillus fermentum IFO 3956 ATP-dependent protease ATP-binding subunit ClpX YP_001843436.1 723329 D 334390 CDS YP_001843437.1 184155097 6231817 724593..725186 1 NC_010610.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 725186 engB 6231817 engB Lactobacillus fermentum IFO 3956 ribosome biogenesis GTP-binding protein YsxC YP_001843437.1 724593 D 334390 CDS YP_001843438.1 184155098 6231818 725186..725485 1 NC_010610.1 hypothetical protein 725485 6231818 LAF_0622 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843438.1 725186 D 334390 CDS YP_001843439.1 184155099 6231819 complement(725752..725898) 1 NC_010610.1 hypothetical protein 725898 6231819 LAF_0623 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843439.1 725752 R 334390 CDS YP_001843440.1 184155100 6231820 726086..726832 1 NC_010610.1 glutamine ABC transporter ATP-binding protein 726832 6231820 LAF_0624 Lactobacillus fermentum IFO 3956 glutamine ABC transporter ATP-binding protein YP_001843440.1 726086 D 334390 CDS YP_001843441.1 184155101 6231821 727110..728921 1 NC_010610.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 728921 uvrC 6231821 uvrC Lactobacillus fermentum IFO 3956 excinuclease ABC subunit C YP_001843441.1 727110 D 334390 CDS YP_001843442.1 184155102 6231822 728986..730293 1 NC_010610.1 GTP-binding protein 730293 6231822 LAF_0626 Lactobacillus fermentum IFO 3956 GTP-binding protein YP_001843442.1 728986 D 334390 CDS YP_001843443.1 184155103 6231823 730320..731252 1 NC_010610.1 beta-lactamase superfamily hydrolase 731252 6231823 LAF_0627 Lactobacillus fermentum IFO 3956 beta-lactamase superfamily hydrolase YP_001843443.1 730320 D 334390 CDS YP_001843444.1 184155104 6231824 731273..732112 1 NC_010610.1 short-chain dehydrogenase/oxidoreductase 732112 6231824 LAF_0628 Lactobacillus fermentum IFO 3956 short-chain dehydrogenase/oxidoreductase YP_001843444.1 731273 D 334390 CDS YP_001843445.1 184155105 6231825 732185..734482 1 NC_010610.1 single-strand DNA-specific exonuclease 734482 6231825 LAF_0629 Lactobacillus fermentum IFO 3956 single-strand DNA-specific exonuclease YP_001843445.1 732185 D 334390 CDS YP_001843446.1 184155106 6231826 734496..735023 1 NC_010610.1 adenine phosphoribosyltransferase 735023 6231826 LAF_0630 Lactobacillus fermentum IFO 3956 adenine phosphoribosyltransferase YP_001843446.1 734496 D 334390 CDS YP_001843447.1 184155107 6231827 735355..735732 1 NC_010610.1 hypothetical protein 735732 6231827 LAF_0631 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843447.1 735355 D 334390 CDS YP_001843448.1 184155108 6231828 complement(735812..736810) 1 NC_010610.1 D-lactate dehydrogenase 736810 6231828 LAF_0632 Lactobacillus fermentum IFO 3956 D-lactate dehydrogenase YP_001843448.1 735812 R 334390 CDS YP_001843449.1 184155109 6231829 737313..738122 1 NC_010610.1 2-oxo-hept-3-ene-1,7-dioate hydratase 738122 6231829 LAF_0633 Lactobacillus fermentum IFO 3956 2-oxo-hept-3-ene-1,7-dioate hydratase YP_001843449.1 737313 D 334390 CDS YP_001843450.1 184155110 6231830 738555..738824 1 NC_010610.1 hypothetical protein 738824 6231830 LAF_0634 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843450.1 738555 D 334390 CDS YP_001843451.1 184155111 6231831 738827..739363 1 NC_010610.1 NAD(P)H oxidoreductase 739363 6231831 LAF_0635 Lactobacillus fermentum IFO 3956 NAD(P)H oxidoreductase YP_001843451.1 738827 D 334390 CDS YP_001843452.1 184155112 6231832 739356..739655 1 NC_010610.1 hypothetical protein 739655 6231832 LAF_0636 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843452.1 739356 D 334390 CDS YP_001843453.1 184155113 6231833 739655..739984 1 NC_010610.1 hypothetical protein 739984 6231833 LAF_0637 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843453.1 739655 D 334390 CDS YP_001843454.1 184155114 6231834 complement(740332..740622) 1 NC_010610.1 hypothetical protein 740622 6231834 LAF_0638 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843454.1 740332 R 334390 CDS YP_001843455.1 184155115 6231835 complement(741841..742932) 1 NC_010610.1 glycerol dehydrogenase 742932 6231835 LAF_0639 Lactobacillus fermentum IFO 3956 glycerol dehydrogenase YP_001843455.1 741841 R 334390 CDS YP_001843456.1 184155116 6231836 743670..743813 1 NC_010610.1 hypothetical protein 743813 6231836 LAF_0640 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843456.1 743670 D 334390 CDS YP_001843457.1 184155117 6231837 743898..744599 1 NC_010610.1 short-chain dehydrogenase/oxidoreductase 744599 6231837 LAF_0641 Lactobacillus fermentum IFO 3956 short-chain dehydrogenase/oxidoreductase YP_001843457.1 743898 D 334390 CDS YP_001843458.1 184155118 6231838 744599..745159 1 NC_010610.1 acetyltransferase 745159 6231838 LAF_0642 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843458.1 744599 D 334390 CDS YP_001843459.1 184155119 6231839 745518..745883 1 NC_010610.1 hypothetical protein 745883 6231839 LAF_0643 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843459.1 745518 D 334390 CDS YP_001843460.1 184155120 6231840 746155..746523 1 NC_010610.1 hypothetical protein 746523 6231840 LAF_0644 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843460.1 746155 D 334390 CDS YP_001843461.1 184155121 6231841 complement(746649..747758) 1 NC_010610.1 transport protein 747758 6231841 LAF_0645 Lactobacillus fermentum IFO 3956 transport protein YP_001843461.1 746649 R 334390 CDS YP_001843462.1 184155122 6231842 complement(748344..749933) 1 NC_010610.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 749933 asnB 6231842 asnB Lactobacillus fermentum IFO 3956 asparagine synthetase B YP_001843462.1 748344 R 334390 CDS YP_001843463.1 184155123 6231843 complement(750757..751212) 1 NC_010610.1 transposase 751212 6231843 LAF_0647 Lactobacillus fermentum IFO 3956 transposase YP_001843463.1 750757 R 334390 CDS YP_001843464.1 184155124 6231844 751286..752536 1 NC_010610.1 transposase 752536 6231844 LAF_0648 Lactobacillus fermentum IFO 3956 transposase YP_001843464.1 751286 D 334390 CDS YP_001843465.1 184155125 6231845 752968..753672 1 NC_010610.1 hypothetical protein 753672 6231845 LAF_0649 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843465.1 752968 D 334390 CDS YP_001843466.1 184155126 6231846 753793..753957 1 NC_010610.1 hypothetical protein 753957 6231846 LAF_0650 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843466.1 753793 D 334390 CDS YP_001843467.1 184155127 6231847 753994..754224 1 NC_010610.1 hypothetical protein 754224 6231847 LAF_0651 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843467.1 753994 D 334390 CDS YP_001843468.1 184155128 6231848 755100..756485 1 NC_010610.1 mucus binding protein precursor 756485 6231848 LAF_0652 Lactobacillus fermentum IFO 3956 mucus binding protein precursor YP_001843468.1 755100 D 334390 CDS YP_001843469.1 184155129 6231849 complement(756567..757007) 1 NC_010610.1 hypothetical protein 757007 6231849 LAF_0653 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843469.1 756567 R 334390 CDS YP_001843470.1 184155130 6231850 complement(757018..758007) 1 NC_010610.1 repressor 758007 6231850 LAF_0654 Lactobacillus fermentum IFO 3956 repressor YP_001843470.1 757018 R 334390 CDS YP_001843471.1 184155131 6231851 complement(758029..758475) 1 NC_010610.1 hypothetical protein 758475 6231851 LAF_0655 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843471.1 758029 R 334390 CDS YP_001843472.1 184155132 6231852 758581..759213 1 NC_010610.1 hypothetical protein 759213 6231852 LAF_0656 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843472.1 758581 D 334390 CDS YP_001843473.1 184155133 6233552 complement(759458..760552) 1 NC_010610.1 integrase 760552 6233552 LAF_0657 Lactobacillus fermentum IFO 3956 integrase YP_001843473.1 759458 R 334390 CDS YP_001843474.1 184155134 6231854 complement(761340..762074) 1 NC_010610.1 hypothetical protein 762074 6231854 LAF_0658 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843474.1 761340 R 334390 CDS YP_001843475.1 184155135 6231855 complement(762662..762976) 1 NC_010610.1 hypothetical protein 762976 6231855 LAF_0659 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843475.1 762662 R 334390 CDS YP_001843476.1 184155136 6231856 complement(763466..763780) 1 NC_010610.1 hypothetical protein 763780 6231856 LAF_0660 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843476.1 763466 R 334390 CDS YP_001843477.1 184155137 6231857 764188..764973 1 NC_010610.1 phage antirepressor 764973 6231857 LAF_0661 Lactobacillus fermentum IFO 3956 phage antirepressor YP_001843477.1 764188 D 334390 CDS YP_001843478.1 184155138 6231858 764977..765141 1 NC_010610.1 hypothetical protein 765141 6231858 LAF_0662 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843478.1 764977 D 334390 CDS YP_001843479.1 184155139 6231859 765522..765704 1 NC_010610.1 hypothetical protein 765704 6231859 LAF_0663 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843479.1 765522 D 334390 CDS YP_001843480.1 184155140 6231860 complement(765701..765928) 1 NC_010610.1 hypothetical protein 765928 6231860 LAF_0664 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843480.1 765701 R 334390 CDS YP_001843481.1 184155141 6231861 765987..766241 1 NC_010610.1 hypothetical protein 766241 6231861 LAF_0665 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843481.1 765987 D 334390 CDS YP_001843482.1 184155142 6231862 766581..766790 1 NC_010610.1 hypothetical protein 766790 6231862 LAF_0666 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843482.1 766581 D 334390 CDS YP_001843483.1 184155143 6232962 766760..767788 1 NC_010610.1 hypothetical protein 767788 6232962 LAF_0667 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843483.1 766760 D 334390 CDS YP_001843484.1 184155144 6232963 767781..768629 1 NC_010610.1 hypothetical protein 768629 6232963 LAF_0668 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843484.1 767781 D 334390 CDS YP_001843485.1 184155145 6232964 768629..769150 1 NC_010610.1 single-strand binding protein 769150 6232964 LAF_0669 Lactobacillus fermentum IFO 3956 single-strand binding protein YP_001843485.1 768629 D 334390 CDS YP_001843486.1 184155146 6232965 771189..772376 1 NC_010610.1 transposase 772376 6232965 LAF_0670 Lactobacillus fermentum IFO 3956 transposase YP_001843486.1 771189 D 334390 CDS YP_001843487.1 184155147 6232966 772764..773453 1 NC_010610.1 hypothetical protein 773453 6232966 LAF_0671 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843487.1 772764 D 334390 CDS YP_001843488.1 184155148 6232967 776191..777462 1 NC_010610.1 hypothetical protein 777462 6232967 LAF_0672 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843488.1 776191 D 334390 CDS YP_001843489.1 184155149 6232968 777941..781120 1 NC_010610.1 hypothetical protein 781120 6232968 LAF_0673 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843489.1 777941 D 334390 CDS YP_001843490.1 184155150 6232969 783261..783845 1 NC_010610.1 hypothetical protein 783845 6232969 LAF_0674 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843490.1 783261 D 334390 CDS YP_001843491.1 184155151 6232970 complement(783999..785015) 1 NC_010610.1 transposase 785015 6232970 LAF_0675 Lactobacillus fermentum IFO 3956 transposase YP_001843491.1 783999 R 334390 CDS YP_001843492.1 184155152 6232971 787295..788515 1 NC_010610.1 transposase 788515 6232971 LAF_0676 Lactobacillus fermentum IFO 3956 transposase YP_001843492.1 787295 D 334390 CDS YP_001843493.1 184155153 6232972 789505..790557 1 NC_010610.1 transposase 790557 6232972 LAF_0677 Lactobacillus fermentum IFO 3956 transposase YP_001843493.1 789505 D 334390 CDS YP_001843494.1 184155154 6232973 790738..791925 1 NC_010610.1 transposase 791925 6232973 LAF_0678 Lactobacillus fermentum IFO 3956 transposase YP_001843494.1 790738 D 334390 CDS YP_001843495.1 184155155 6232974 792069..792932 1 NC_010610.1 ABC transporter ATP-binding protein 792932 6232974 LAF_0679 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843495.1 792069 D 334390 CDS YP_001843496.1 184155156 6232975 792934..793779 1 NC_010610.1 ABC transporter permease 793779 6232975 LAF_0680 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001843496.1 792934 D 334390 CDS YP_001843497.1 184155157 6232976 793858..794109 1 NC_010610.1 transposase 794109 6232976 LAF_0681 Lactobacillus fermentum IFO 3956 transposase YP_001843497.1 793858 D 334390 CDS YP_001843498.1 184155158 6232977 794304..795005 1 NC_010610.1 transposase 795005 6232977 LAF_0682 Lactobacillus fermentum IFO 3956 transposase YP_001843498.1 794304 D 334390 CDS YP_001843499.1 184155159 6232978 795975..796643 1 NC_010610.1 transposase 796643 6232978 LAF_0683 Lactobacillus fermentum IFO 3956 transposase YP_001843499.1 795975 D 334390 CDS YP_001843500.1 184155160 6232979 796989..797261 1 NC_010610.1 hypothetical protein 797261 6232979 LAF_0684 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843500.1 796989 D 334390 CDS YP_001843501.1 184155161 6232980 complement(797298..798422) 1 NC_010610.1 hypothetical protein 798422 6232980 LAF_0685 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843501.1 797298 R 334390 CDS YP_001843502.1 184155162 6232981 complement(798409..799851) 1 NC_010610.1 hypothetical protein 799851 6232981 LAF_0686 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843502.1 798409 R 334390 CDS YP_001843503.1 184155163 6232982 complement(799985..800863) 1 NC_010610.1 transposase 800863 6232982 LAF_0687 Lactobacillus fermentum IFO 3956 transposase YP_001843503.1 799985 R 334390 CDS YP_001843504.1 184155164 6232983 801929..803149 1 NC_010610.1 transposase 803149 6232983 LAF_0688 Lactobacillus fermentum IFO 3956 transposase YP_001843504.1 801929 D 334390 CDS YP_001843505.1 184155165 6232984 803571..804449 1 NC_010610.1 transposase 804449 6232984 LAF_0689 Lactobacillus fermentum IFO 3956 transposase YP_001843505.1 803571 D 334390 CDS YP_001843506.1 184155166 6232985 805003..807726 1 NC_010610.1 hypothetical protein 807726 6232985 LAF_0690 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843506.1 805003 D 334390 CDS YP_001843507.1 184155167 6232986 807928..809115 1 NC_010610.1 transposase 809115 6232986 LAF_0691 Lactobacillus fermentum IFO 3956 transposase YP_001843507.1 807928 D 334390 CDS YP_001843508.1 184155168 6232987 809208..810785 1 NC_010610.1 hypothetical protein 810785 6232987 LAF_0692 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843508.1 809208 D 334390 CDS YP_001843509.1 184155169 6232988 810793..811386 1 NC_010610.1 hypothetical protein 811386 6232988 LAF_0693 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843509.1 810793 D 334390 CDS YP_001843510.1 184155170 6232989 811413..812495 1 NC_010610.1 hypothetical protein 812495 6232989 LAF_0694 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843510.1 811413 D 334390 CDS YP_001843511.1 184155171 6232990 812476..813183 1 NC_010610.1 hypothetical protein 813183 6232990 LAF_0695 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843511.1 812476 D 334390 CDS YP_001843512.1 184155172 6232991 813168..813842 1 NC_010610.1 hypothetical protein 813842 6232991 LAF_0696 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843512.1 813168 D 334390 CDS YP_001843513.1 184155173 6232992 813856..814797 1 NC_010610.1 hypothetical protein 814797 6232992 LAF_0697 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843513.1 813856 D 334390 CDS YP_001843514.1 184155174 6232993 815613..816629 1 NC_010610.1 transposase 816629 6232993 LAF_0698 Lactobacillus fermentum IFO 3956 transposase YP_001843514.1 815613 D 334390 CDS YP_001843515.1 184155175 6232994 complement(818216..819436) 1 NC_010610.1 transposase 819436 6232994 LAF_0699 Lactobacillus fermentum IFO 3956 transposase YP_001843515.1 818216 R 334390 CDS YP_001843516.1 184155176 6232995 821035..822255 1 NC_010610.1 transposase 822255 6232995 LAF_0700 Lactobacillus fermentum IFO 3956 transposase YP_001843516.1 821035 D 334390 CDS YP_001843517.1 184155177 6232996 822783..823169 1 NC_010610.1 hypothetical protein 823169 6232996 LAF_0701 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843517.1 822783 D 334390 CDS YP_001843518.1 184155178 6232997 824323..824931 1 NC_010610.1 transposase 824931 6232997 LAF_0702 Lactobacillus fermentum IFO 3956 transposase YP_001843518.1 824323 D 334390 CDS YP_001843519.1 184155179 6233493 complement(825047..825367) 1 NC_010610.1 hypothetical protein 825367 6233493 LAF_0703 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843519.1 825047 R 334390 CDS YP_001843520.1 184155180 6233494 825496..826719 1 NC_010610.1 hypothetical protein 826719 6233494 LAF_0704 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843520.1 825496 D 334390 CDS YP_001843521.1 184155181 6233495 complement(826741..828075) 1 NC_010610.1 amino acid transporter 828075 6233495 LAF_0705 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001843521.1 826741 R 334390 CDS YP_001843522.1 184155182 6233496 828165..828854 1 NC_010610.1 hypothetical protein 828854 6233496 LAF_0706 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843522.1 828165 D 334390 CDS YP_001843523.1 184155183 6233497 829093..830262 1 NC_010610.1 hydroxymethylglutaryl-CoA synthase 830262 6233497 LAF_0707 Lactobacillus fermentum IFO 3956 hydroxymethylglutaryl-CoA synthase YP_001843523.1 829093 D 334390 CDS YP_001843524.1 184155184 6233498 complement(830611..831237) 1 NC_010610.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 831237 6233498 LAF_0708 Lactobacillus fermentum IFO 3956 LexA repressor YP_001843524.1 830611 R 334390 CDS YP_001843525.1 184155185 6233499 831393..831644 1 NC_010610.1 hypothetical protein 831644 6233499 LAF_0709 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843525.1 831393 D 334390 CDS YP_001843526.1 184155186 6233500 831694..831948 1 NC_010610.1 hypothetical protein 831948 6233500 LAF_0710 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843526.1 831694 D 334390 CDS YP_001843527.1 184155187 6233501 complement(832016..832648) 1 NC_010610.1 1-acylglycerol-3-phosphate O-acyltransferase 832648 6233501 LAF_0711 Lactobacillus fermentum IFO 3956 1-acylglycerol-3-phosphate O-acyltransferase YP_001843527.1 832016 R 334390 CDS YP_001843528.1 184155188 6233502 832744..833496 1 NC_010610.1 hypothetical protein 833496 6233502 LAF_0712 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843528.1 832744 D 334390 CDS YP_001843529.1 184155189 6233503 833489..833779 1 NC_010610.1 hypothetical protein 833779 6233503 LAF_0713 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843529.1 833489 D 334390 CDS YP_001843530.1 184155190 6233504 833933..834712 1 NC_010610.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 834712 rpsB 6233504 rpsB Lactobacillus fermentum IFO 3956 30S ribosomal protein S2 YP_001843530.1 833933 D 334390 CDS YP_001843531.1 184155191 6233505 834803..835681 1 NC_010610.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 835681 tsf 6233505 tsf Lactobacillus fermentum IFO 3956 elongation factor Ts YP_001843531.1 834803 D 334390 CDS YP_001843532.1 184155192 6233506 835762..836487 1 NC_010610.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 836487 pyrH 6233506 pyrH Lactobacillus fermentum IFO 3956 uridylate kinase YP_001843532.1 835762 D 334390 CDS YP_001843533.1 184155193 6233507 836487..837047 1 NC_010610.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 837047 frr 6233507 frr Lactobacillus fermentum IFO 3956 ribosome recycling factor YP_001843533.1 836487 D 334390 CDS YP_001843534.1 184155194 6233508 837174..837947 1 NC_010610.1 undecaprenyl diphosphate synthase 837947 6233508 LAF_0718 Lactobacillus fermentum IFO 3956 undecaprenyl diphosphate synthase YP_001843534.1 837174 D 334390 CDS YP_001843535.1 184155195 6233509 837964..838752 1 NC_010610.1 phosphatidate cytidylyltransferase 838752 6233509 LAF_0719 Lactobacillus fermentum IFO 3956 phosphatidate cytidylyltransferase YP_001843535.1 837964 D 334390 CDS YP_001843536.1 184155196 6233510 838774..840045 1 NC_010610.1 zinc metalloprotease 840045 6233510 LAF_0720 Lactobacillus fermentum IFO 3956 zinc metalloprotease YP_001843536.1 838774 D 334390 CDS YP_001843537.1 184155197 6233511 840079..841800 1 NC_010610.1 prolyl-tRNA synthase 841800 6233511 LAF_0721 Lactobacillus fermentum IFO 3956 prolyl-tRNA synthase YP_001843537.1 840079 D 334390 CDS YP_001843538.1 184155198 6233512 841940..846283 1 NC_010610.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 846283 polC 6233512 polC Lactobacillus fermentum IFO 3956 DNA polymerase III PolC YP_001843538.1 841940 D 334390 CDS YP_001843539.1 184155199 6233513 complement(846406..847557) 1 NC_010610.1 acetylornithine aminotransferase 847557 argD 6233513 argD Lactobacillus fermentum IFO 3956 acetylornithine aminotransferase YP_001843539.1 846406 R 334390 CDS YP_001843540.1 184155200 6233514 complement(847570..848316) 1 NC_010610.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 848316 6233514 LAF_0724 Lactobacillus fermentum IFO 3956 acetylglutamate kinase YP_001843540.1 847570 R 334390 CDS YP_001843541.1 184155201 6233515 complement(848326..849489) 1 NC_010610.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 849489 argJ 6233515 argJ Lactobacillus fermentum IFO 3956 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_001843541.1 848326 R 334390 CDS YP_001843542.1 184155202 6233516 complement(849554..850579) 1 NC_010610.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 850579 argC 6233516 argC Lactobacillus fermentum IFO 3956 N-acetyl-gamma-glutamyl-phosphate reductase YP_001843542.1 849554 R 334390 CDS YP_001843543.1 184155203 6233517 850825..851895 1 NC_010610.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 851895 6233517 LAF_0727 Lactobacillus fermentum IFO 3956 carbamoyl phosphate synthase small subunit YP_001843543.1 850825 D 334390 CDS YP_001843544.1 184155204 6233518 851888..854977 1 NC_010610.1 carbamoyl-phosphate synthase large subunit 854977 6233518 LAF_0728 Lactobacillus fermentum IFO 3956 carbamoyl-phosphate synthase large subunit YP_001843544.1 851888 D 334390 CDS YP_001843545.1 184155205 6233519 855130..855609 1 NC_010610.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 855609 6233519 LAF_0729 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843545.1 855130 D 334390 CDS YP_001843546.1 184155206 6233520 855629..856855 1 NC_010610.1 transcription termination-antitermination factor NusA 856855 6233520 LAF_0730 Lactobacillus fermentum IFO 3956 transcription termination-antitermination factor NusA YP_001843546.1 855629 D 334390 CDS YP_001843547.1 184155207 6233521 856892..857194 1 NC_010610.1 hypothetical protein 857194 6233521 LAF_0731 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843547.1 856892 D 334390 CDS YP_001843548.1 184155208 6233522 857187..857510 1 NC_010610.1 ribosomal protein 857510 6233522 LAF_0732 Lactobacillus fermentum IFO 3956 ribosomal protein YP_001843548.1 857187 D 334390 CDS YP_001843549.1 184155209 6233523 857515..859842 1 NC_010610.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 859842 infB 6233523 infB Lactobacillus fermentum IFO 3956 translation initiation factor IF-2 YP_001843549.1 857515 D 334390 CDS YP_001843550.1 184155210 6233524 859855..860217 1 NC_010610.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 860217 rbfA 6233524 rbfA Lactobacillus fermentum IFO 3956 ribosome-binding factor A YP_001843550.1 859855 D 334390 CDS YP_001843551.1 184155211 6233525 860287..861183 1 NC_010610.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 861183 truB 6233525 truB Lactobacillus fermentum IFO 3956 tRNA pseudouridine synthase B YP_001843551.1 860287 D 334390 CDS YP_001843552.1 184155212 6233526 861194..862159 1 NC_010610.1 riboflavin biosynthesis protein 862159 6233526 LAF_0736 Lactobacillus fermentum IFO 3956 riboflavin biosynthesis protein YP_001843552.1 861194 D 334390 CDS YP_001843553.1 184155213 6233527 862274..863662 1 NC_010610.1 multidrug transport protein 863662 6233527 LAF_0737 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001843553.1 862274 D 334390 CDS YP_001843554.1 184155214 6233528 complement(865704..867041) 1 NC_010610.1 sugar transport protein 867041 6233528 LAF_0738 Lactobacillus fermentum IFO 3956 sugar transport protein YP_001843554.1 865704 R 334390 CDS YP_001843555.1 184155215 6233529 complement(867050..868744) 1 NC_010610.1 alpha-glucosidase 868744 6233529 LAF_0739 Lactobacillus fermentum IFO 3956 alpha-glucosidase YP_001843555.1 867050 R 334390 CDS YP_001843556.1 184155216 6233530 868902..869888 1 NC_010610.1 transcription regulator 869888 6233530 LAF_0740 Lactobacillus fermentum IFO 3956 transcription regulator YP_001843556.1 868902 D 334390 CDS YP_001843557.1 184155217 6233531 871786..872958 1 NC_010610.1 1,3-propanediol dehydrogenase 872958 6233531 LAF_0741 Lactobacillus fermentum IFO 3956 1,3-propanediol dehydrogenase YP_001843557.1 871786 D 334390 CDS YP_001843558.1 184155218 6233532 874609..875574 1 NC_010610.1 2-dehydropantoate 2-reductase 875574 6233532 LAF_0742 Lactobacillus fermentum IFO 3956 2-dehydropantoate 2-reductase YP_001843558.1 874609 D 334390 CDS YP_001843559.1 184155219 6233533 complement(875920..876273) 1 NC_010610.1 hypothetical protein 876273 6233533 LAF_0743 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843559.1 875920 R 334390 CDS YP_001843560.1 184155220 6233534 complement(877072..878400) 1 NC_010610.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 878400 6233534 LAF_0744 Lactobacillus fermentum IFO 3956 D-serine dehydratase YP_001843560.1 877072 R 334390 CDS YP_001843561.1 184155221 6233535 complement(878690..880090) 1 NC_010610.1 amino acid transporter 880090 6233535 LAF_0745 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001843561.1 878690 R 334390 CDS YP_001843562.1 184155222 6233536 880341..880643 1 NC_010610.1 hypothetical protein 880643 6233536 LAF_0746 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843562.1 880341 D 334390 CDS YP_001843563.1 184155223 6233537 880667..881545 1 NC_010610.1 transposase 881545 6233537 LAF_0747 Lactobacillus fermentum IFO 3956 transposase YP_001843563.1 880667 D 334390 CDS YP_001843564.1 184155224 6233538 complement(882386..882841) 1 NC_010610.1 hypothetical protein 882841 6233538 LAF_0748 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843564.1 882386 R 334390 CDS YP_001843565.1 184155225 6233539 882868..883923 1 NC_010610.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 883923 hrcA 6233539 hrcA Lactobacillus fermentum IFO 3956 heat-inducible transcription repressor YP_001843565.1 882868 D 334390 CDS YP_001843566.1 184155226 6233540 883934..884521 1 NC_010610.1 heat shock protein GrpE 884521 6233540 LAF_0750 Lactobacillus fermentum IFO 3956 heat shock protein GrpE YP_001843566.1 883934 D 334390 CDS YP_001843567.1 184155227 6233541 884559..886415 1 NC_010610.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 886415 dnaK 6233541 dnaK Lactobacillus fermentum IFO 3956 molecular chaperone DnaK YP_001843567.1 884559 D 334390 CDS YP_001843568.1 184155228 6233542 886527..887687 1 NC_010610.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 887687 6233542 LAF_0752 Lactobacillus fermentum IFO 3956 chaperone protein DnaJ YP_001843568.1 886527 D 334390 CDS YP_001843569.1 184155229 6233543 888093..888641 1 NC_010610.1 amidotransferase 888641 6233543 LAF_0753 Lactobacillus fermentum IFO 3956 amidotransferase YP_001843569.1 888093 D 334390 CDS YP_001843570.1 184155230 6233544 889628..890467 1 NC_010610.1 catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 890467 6233544 LAF_0754 Lactobacillus fermentum IFO 3956 histidinol-phosphatase YP_001843570.1 889628 D 334390 CDS YP_001843571.1 184155231 6233545 890789..891949 1 NC_010610.1 histidyl-tRNA synthase 891949 6233545 LAF_0755 Lactobacillus fermentum IFO 3956 histidyl-tRNA synthase YP_001843571.1 890789 D 334390 CDS YP_001843572.1 184155232 6233546 891942..892556 1 NC_010610.1 ATP phosphoribosyltransferase 892556 6233546 LAF_0756 Lactobacillus fermentum IFO 3956 ATP phosphoribosyltransferase YP_001843572.1 891942 D 334390 CDS YP_001843573.1 184155233 6233547 892558..893841 1 NC_010610.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 893841 hisD 6233547 hisD Lactobacillus fermentum IFO 3956 histidinol dehydrogenase YP_001843573.1 892558 D 334390 CDS YP_001843574.1 184155234 6233548 893843..894427 1 NC_010610.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 894427 hisB 6233548 hisB Lactobacillus fermentum IFO 3956 imidazoleglycerol-phosphate dehydratase YP_001843574.1 893843 D 334390 CDS YP_001843575.1 184155235 6233549 894427..895035 1 NC_010610.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 895035 hisH 6233549 hisH Lactobacillus fermentum IFO 3956 imidazole glycerol phosphate synthase subunit HisH YP_001843575.1 894427 D 334390 CDS YP_001843576.1 184155236 6232617 895032..895757 1 NC_010610.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 895757 6232617 LAF_0760 Lactobacillus fermentum IFO 3956 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_001843576.1 895032 D 334390 CDS YP_001843577.1 184155237 6233269 895747..896532 1 NC_010610.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 896532 6233269 LAF_0761 Lactobacillus fermentum IFO 3956 imidazole glycerol phosphate synthase subunit HisF YP_001843577.1 895747 D 334390 CDS YP_001843578.1 184155238 6233270 896502..896819 1 NC_010610.1 phosphoribosyl-AMP cyclohydrolase 896819 6233270 LAF_0762 Lactobacillus fermentum IFO 3956 phosphoribosyl-AMP cyclohydrolase YP_001843578.1 896502 D 334390 CDS YP_001843579.1 184155239 6233271 896821..897141 1 NC_010610.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 897141 hisE 6233271 hisE Lactobacillus fermentum IFO 3956 phosphoribosyl-ATP pyrophosphatase YP_001843579.1 896821 D 334390 CDS YP_001843580.1 184155240 6233272 897154..898239 1 NC_010610.1 histidinol-phosphate aminotransferase 898239 6233272 LAF_0764 Lactobacillus fermentum IFO 3956 histidinol-phosphate aminotransferase YP_001843580.1 897154 D 334390 CDS YP_001843581.1 184155241 6233273 898307..900139 1 NC_010610.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 900139 6233273 LAF_0765 Lactobacillus fermentum IFO 3956 GTP-binding protein LepA YP_001843581.1 898307 D 334390 CDS YP_001843582.1 184155242 6233274 complement(900648..901151) 1 NC_010610.1 hypothetical protein 901151 6233274 LAF_0766 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843582.1 900648 R 334390 CDS YP_001843583.1 184155243 6233275 complement(901187..901810) 1 NC_010610.1 phosphoglycerate mutase 901810 6233275 LAF_0767 Lactobacillus fermentum IFO 3956 phosphoglycerate mutase YP_001843583.1 901187 R 334390 CDS YP_001843584.1 184155244 6233276 903183..904256 1 NC_010610.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 904256 6233276 LAF_0768 Lactobacillus fermentum IFO 3956 phosphoserine aminotransferase YP_001843584.1 903183 D 334390 CDS YP_001843585.1 184155245 6233277 904268..905443 1 NC_010610.1 D-3-phosphoglycerate dehydrogenase 905443 6233277 LAF_0769 Lactobacillus fermentum IFO 3956 D-3-phosphoglycerate dehydrogenase YP_001843585.1 904268 D 334390 CDS YP_001843586.1 184155246 6233278 905657..907021 1 NC_010610.1 hypothetical protein 907021 6233278 LAF_0770 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843586.1 905657 D 334390 CDS YP_001843587.1 184155247 6233279 906994..907335 1 NC_010610.1 hypothetical protein 907335 6233279 LAF_0771 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843587.1 906994 D 334390 CDS YP_001843588.1 184155248 6233280 907352..907828 1 NC_010610.1 hypothetical protein 907828 6233280 LAF_0772 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843588.1 907352 D 334390 CDS YP_001843589.1 184155249 6233281 complement(907989..908459) 1 NC_010610.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 908459 ribH 6233281 ribH Lactobacillus fermentum IFO 3956 6,7-dimethyl-8-ribityllumazine synthase YP_001843589.1 907989 R 334390 CDS YP_001843590.1 184155250 6233282 complement(908452..909645) 1 NC_010610.1 GTP cyclohydrolase II 909645 6233282 LAF_0774 Lactobacillus fermentum IFO 3956 GTP cyclohydrolase II YP_001843590.1 908452 R 334390 CDS YP_001843591.1 184155251 6233283 complement(909632..910240) 1 NC_010610.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 910240 6233283 LAF_0775 Lactobacillus fermentum IFO 3956 riboflavin synthase subunit alpha YP_001843591.1 909632 R 334390 CDS YP_001843592.1 184155252 6233284 complement(910240..911298) 1 NC_010610.1 riboflavin biosynthesis protein 911298 6233284 LAF_0776 Lactobacillus fermentum IFO 3956 riboflavin biosynthesis protein YP_001843592.1 910240 R 334390 CDS YP_001843593.1 184155253 6233285 complement(911708..912040) 1 NC_010610.1 hypothetical protein 912040 6233285 LAF_0777 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843593.1 911708 R 334390 CDS YP_001843594.1 184155254 6233286 913832..914587 1 NC_010610.1 transposase 914587 6233286 LAF_0778 Lactobacillus fermentum IFO 3956 transposase YP_001843594.1 913832 D 334390 CDS YP_001843595.1 184155255 6233287 complement(916054..918024) 1 NC_010610.1 lactose transport protein 918024 6233287 LAF_0779 Lactobacillus fermentum IFO 3956 lactose transport protein YP_001843595.1 916054 R 334390 CDS YP_001843596.1 184155256 6233288 complement(918039..920099) 1 NC_010610.1 beta-galactosidase 920099 6233288 LAF_0780 Lactobacillus fermentum IFO 3956 beta-galactosidase YP_001843596.1 918039 R 334390 CDS YP_001843597.1 184155257 6233289 920380..921381 1 NC_010610.1 transcriptional regulator 921381 6233289 LAF_0781 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843597.1 920380 D 334390 CDS YP_001843598.1 184155258 6233290 complement(921543..922025) 1 NC_010610.1 DNA-binding ferritin-like protein 922025 6233290 LAF_0782 Lactobacillus fermentum IFO 3956 DNA-binding ferritin-like protein YP_001843598.1 921543 R 334390 CDS YP_001843599.1 184155259 6233291 923660..924508 1 NC_010610.1 transposase 924508 6233291 LAF_0783 Lactobacillus fermentum IFO 3956 transposase YP_001843599.1 923660 D 334390 CDS YP_001843600.1 184155260 6233292 925101..926087 1 NC_010610.1 transposase 926087 6233292 LAF_0784 Lactobacillus fermentum IFO 3956 transposase YP_001843600.1 925101 D 334390 CDS YP_001843601.1 184155261 6233293 926293..927465 1 NC_010610.1 cysteine desulfurase 927465 6233293 LAF_0785 Lactobacillus fermentum IFO 3956 cysteine desulfurase YP_001843601.1 926293 D 334390 CDS YP_001843602.1 184155262 6233294 complement(927755..928207) 1 NC_010610.1 transposase 928207 6233294 LAF_0786 Lactobacillus fermentum IFO 3956 transposase YP_001843602.1 927755 R 334390 CDS YP_001843603.1 184155263 6233295 928286..929536 1 NC_010610.1 transposase 929536 6233295 LAF_0787 Lactobacillus fermentum IFO 3956 transposase YP_001843603.1 928286 D 334390 CDS YP_001843604.1 184155264 6233296 929721..930782 1 NC_010610.1 peptidase 930782 6233296 LAF_0788 Lactobacillus fermentum IFO 3956 peptidase YP_001843604.1 929721 D 334390 CDS YP_001843605.1 184155265 6233297 complement(930910..931521) 1 NC_010610.1 cadmium resistance transport protein 931521 6233297 LAF_0789 Lactobacillus fermentum IFO 3956 cadmium resistance transport protein YP_001843605.1 930910 R 334390 CDS YP_001843606.1 184155266 6233298 complement(931522..932202) 1 NC_010610.1 hypothetical protein 932202 6233298 LAF_0790 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843606.1 931522 R 334390 CDS YP_001843607.1 184155267 6233299 932377..932916 1 NC_010610.1 peptide methionine sulfoxide reductase 932916 6233299 LAF_0791 Lactobacillus fermentum IFO 3956 peptide methionine sulfoxide reductase YP_001843607.1 932377 D 334390 CDS YP_001843608.1 184155268 6233300 933216..933359 1 NC_010610.1 hypothetical protein 933359 6233300 LAF_0792 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843608.1 933216 D 334390 CDS YP_001843609.1 184155269 6233301 933449..934297 1 NC_010610.1 outer membrane lipoprotein precursor 934297 6233301 LAF_0793 Lactobacillus fermentum IFO 3956 outer membrane lipoprotein precursor YP_001843609.1 933449 D 334390 CDS YP_001843610.1 184155270 6233302 934310..934831 1 NC_010610.1 peptide methionine sulfoxide reductase 934831 6233302 LAF_0794 Lactobacillus fermentum IFO 3956 peptide methionine sulfoxide reductase YP_001843610.1 934310 D 334390 CDS YP_001843611.1 184155271 6233303 complement(935655..936035) 1 NC_010610.1 hypothetical protein 936035 6233303 LAF_0795 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843611.1 935655 R 334390 CDS YP_001843612.1 184155272 6233304 complement(936025..936276) 1 NC_010610.1 hypothetical protein 936276 6233304 LAF_0796 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843612.1 936025 R 334390 CDS YP_001843613.1 184155273 6233305 complement(936403..937494) 1 NC_010610.1 benzyl alcohol dehydrogenase 937494 6233305 LAF_0797 Lactobacillus fermentum IFO 3956 benzyl alcohol dehydrogenase YP_001843613.1 936403 R 334390 CDS YP_001843614.1 184155274 6233306 943978..944235 1 NC_010610.1 hypothetical protein 944235 6233306 LAF_0798 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843614.1 943978 D 334390 CDS YP_001843615.1 184155275 6233307 944325..944768 1 NC_010610.1 phosphate-starvation-inducible protein PsiE 944768 6233307 LAF_0799 Lactobacillus fermentum IFO 3956 phosphate-starvation-inducible protein PsiE YP_001843615.1 944325 D 334390 CDS YP_001843616.1 184155276 6233308 944765..945595 1 NC_010610.1 phosphomethylpyrimidine kinase 945595 6233308 LAF_0800 Lactobacillus fermentum IFO 3956 phosphomethylpyrimidine kinase YP_001843616.1 944765 D 334390 CDS YP_001843617.1 184155277 6233309 complement(945657..946298) 1 NC_010610.1 thiamine-phosphate pyrophosphorylase 946298 6233309 LAF_0801 Lactobacillus fermentum IFO 3956 thiamine-phosphate pyrophosphorylase YP_001843617.1 945657 R 334390 CDS YP_001843618.1 184155278 6233310 complement(946463..947260) 1 NC_010610.1 phosphomethylpyrimidine kinase 947260 6233310 LAF_0802 Lactobacillus fermentum IFO 3956 phosphomethylpyrimidine kinase YP_001843618.1 946463 R 334390 CDS YP_001843619.1 184155279 6233311 complement(947283..948047) 1 NC_010610.1 hydroxyethylthiazole kinase 948047 6233311 LAF_0803 Lactobacillus fermentum IFO 3956 hydroxyethylthiazole kinase YP_001843619.1 947283 R 334390 CDS YP_001843620.1 184155280 6233312 948493..950460 1 NC_010610.1 hypothetical protein 950460 6233312 LAF_0804 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843620.1 948493 D 334390 CDS YP_001843621.1 184155281 6233313 950715..951281 1 NC_010610.1 hypothetical protein 951281 6233313 LAF_0805 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843621.1 950715 D 334390 CDS YP_001843622.1 184155282 6233314 complement(951470..952423) 1 NC_010610.1 L-lactate dehydrogenase 952423 6233314 LAF_0806 Lactobacillus fermentum IFO 3956 L-lactate dehydrogenase YP_001843622.1 951470 R 334390 CDS YP_001843623.1 184155283 6233315 952983..953309 1 NC_010610.1 hypothetical protein 953309 6233315 LAF_0807 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843623.1 952983 D 334390 CDS YP_001843624.1 184155284 6233316 953365..954327 1 NC_010610.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 954327 prmA 6233316 prmA Lactobacillus fermentum IFO 3956 ribosomal protein L11 methyltransferase YP_001843624.1 953365 D 334390 CDS YP_001843625.1 184155285 6233317 954327..955076 1 NC_010610.1 hypothetical protein 955076 6233317 LAF_0809 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843625.1 954327 D 334390 CDS YP_001843626.1 184155286 6233318 955136..955477 1 NC_010610.1 hypothetical protein 955477 6233318 LAF_0810 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843626.1 955136 D 334390 CDS YP_001843627.1 184155287 6233319 955493..957727 1 NC_010610.1 GTP pyrophosphokinase 957727 6233319 LAF_0811 Lactobacillus fermentum IFO 3956 GTP pyrophosphokinase YP_001843627.1 955493 D 334390 CDS YP_001843628.1 184155288 6233320 957737..958174 1 NC_010610.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 958174 6233320 LAF_0812 Lactobacillus fermentum IFO 3956 D-tyrosyl-tRNA(Tyr) deacylase YP_001843628.1 957737 D 334390 CDS YP_001843629.1 184155289 6233321 958460..958969 1 NC_010610.1 hypothetical protein 958969 6233321 LAF_0813 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843629.1 958460 D 334390 CDS YP_001843630.1 184155290 6233322 959317..960513 1 NC_010610.1 cystathionine beta-lyase 960513 6233322 LAF_0814 Lactobacillus fermentum IFO 3956 cystathionine beta-lyase YP_001843630.1 959317 D 334390 CDS YP_001843631.1 184155291 6233323 960488..961615 1 NC_010610.1 cystathionine gamma-lyase 961615 6233323 LAF_0815 Lactobacillus fermentum IFO 3956 cystathionine gamma-lyase YP_001843631.1 960488 D 334390 CDS YP_001843632.1 184155292 6233324 961938..962951 1 NC_010610.1 hypothetical protein 962951 6233324 LAF_0816 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843632.1 961938 D 334390 CDS YP_001843633.1 184155293 6233325 962966..963709 1 NC_010610.1 ABC transporter ATP-binding protein 963709 6233325 LAF_0817 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843633.1 962966 D 334390 CDS YP_001843634.1 184155294 6233326 964403..965107 1 NC_010610.1 ABC transporter permease 965107 6233326 LAF_0818 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001843634.1 964403 D 334390 CDS YP_001843635.1 184155295 6233327 965128..965964 1 NC_010610.1 ABC transporter substrate-binding protein 965964 6233327 LAF_0819 Lactobacillus fermentum IFO 3956 ABC transporter substrate-binding protein YP_001843635.1 965128 D 334390 CDS YP_001843636.1 184155296 6232268 966284..966943 1 NC_010610.1 ABC transporter permease 966943 6232268 LAF_0820 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001843636.1 966284 D 334390 CDS YP_001843637.1 184155297 6232269 966924..967595 1 NC_010610.1 ABC transporter permease 967595 6232269 LAF_0821 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001843637.1 966924 D 334390 CDS YP_001843638.1 184155298 6232270 967606..968346 1 NC_010610.1 ABC transporter ATP-binding protein 968346 6232270 LAF_0822 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843638.1 967606 D 334390 CDS YP_001843639.1 184155299 6232271 968362..969216 1 NC_010610.1 ABC transporter substrate-binding protein 969216 6232271 LAF_0823 Lactobacillus fermentum IFO 3956 ABC transporter substrate-binding protein YP_001843639.1 968362 D 334390 CDS YP_001843640.1 184155300 6232272 969647..970390 1 NC_010610.1 alcohol dehydrogenase 970390 6232272 LAF_0824 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001843640.1 969647 D 334390 CDS YP_001843641.1 184155301 6232273 complement(970569..971735) 1 NC_010610.1 homoserine dehydrogenase 971735 6232273 LAF_0825 Lactobacillus fermentum IFO 3956 homoserine dehydrogenase YP_001843641.1 970569 R 334390 CDS YP_001843642.1 184155302 6232274 complement(971742..972566) 1 NC_010610.1 homoserine O-succinyltransferase 972566 6232274 LAF_0826 Lactobacillus fermentum IFO 3956 homoserine O-succinyltransferase YP_001843642.1 971742 R 334390 CDS YP_001843643.1 184155303 6232275 complement(972900..974318) 1 NC_010610.1 amino acid transporter 974318 6232275 LAF_0827 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001843643.1 972900 R 334390 CDS YP_001843644.1 184155304 6232276 974400..975332 1 NC_010610.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase 975332 mmuM 6232276 mmuM Lactobacillus fermentum IFO 3956 homocysteine methyltransferase YP_001843644.1 974400 D 334390 CDS YP_001843645.1 184155305 6232277 complement(975432..976274) 1 NC_010610.1 hypothetical protein 976274 6232277 LAF_0829 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843645.1 975432 R 334390 CDS YP_001843646.1 184155306 6232278 complement(976276..977256) 1 NC_010610.1 N-acetylmuramoyl-L-alanine amidase 977256 6232278 LAF_0830 Lactobacillus fermentum IFO 3956 N-acetylmuramoyl-L-alanine amidase YP_001843646.1 976276 R 334390 CDS YP_001843647.1 184155307 6232279 complement(977207..978235) 1 NC_010610.1 lipoate-protein ligase 978235 6232279 LAF_0831 Lactobacillus fermentum IFO 3956 lipoate-protein ligase YP_001843647.1 977207 R 334390 CDS YP_001843648.1 184155308 6232280 978612..979907 1 NC_010610.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 979907 hisS 6232280 hisS Lactobacillus fermentum IFO 3956 histidyl-tRNA synthetase YP_001843648.1 978612 D 334390 CDS YP_001843649.1 184155309 6232281 979911..981686 1 NC_010610.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 981686 aspS 6232281 aspS Lactobacillus fermentum IFO 3956 aspartyl-tRNA synthetase YP_001843649.1 979911 D 334390 CDS YP_001843650.1 184155310 6232282 982362..983045 1 NC_010610.1 hypothetical protein 983045 6232282 LAF_0834 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843650.1 982362 D 334390 CDS YP_001843651.1 184155311 6232283 983159..983347 1 NC_010610.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 983347 rpsU 6232283 rpsU Lactobacillus fermentum IFO 3956 30S ribosomal protein S21 YP_001843651.1 983159 D 334390 CDS YP_001843652.1 184155312 6232284 983412..983861 1 NC_010610.1 hypothetical protein 983861 6232284 LAF_0836 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843652.1 983412 D 334390 CDS YP_001843653.1 184155313 6232285 984009..984992 1 NC_010610.1 phosphate starvation-inducible protein 984992 6232285 LAF_0837 Lactobacillus fermentum IFO 3956 phosphate starvation-inducible protein YP_001843653.1 984009 D 334390 CDS YP_001843654.1 184155314 6232286 984992..985465 1 NC_010610.1 hypothetical protein 985465 6232286 LAF_0838 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843654.1 984992 D 334390 CDS YP_001843655.1 184155315 6232287 985443..985841 1 NC_010610.1 diacylglycerol kinase 985841 6232287 LAF_0839 Lactobacillus fermentum IFO 3956 diacylglycerol kinase YP_001843655.1 985443 D 334390 CDS YP_001843656.1 184155316 6232288 985855..986760 1 NC_010610.1 GTP-binding protein 986760 6232288 LAF_0840 Lactobacillus fermentum IFO 3956 GTP-binding protein YP_001843656.1 985855 D 334390 CDS YP_001843657.1 184155317 6232289 986873..987691 1 NC_010610.1 DNA repair protein RecO 987691 6232289 LAF_0841 Lactobacillus fermentum IFO 3956 DNA repair protein RecO YP_001843657.1 986873 D 334390 CDS YP_001843658.1 184155318 6232290 987959..988933 1 NC_010610.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 988933 glyQ 6232290 glyQ Lactobacillus fermentum IFO 3956 glycyl-tRNA synthetase subunit alpha YP_001843658.1 987959 D 334390 CDS YP_001843659.1 184155319 6232291 988933..991011 1 NC_010610.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 991011 glyS 6232291 glyS Lactobacillus fermentum IFO 3956 glycyl-tRNA synthetase subunit beta YP_001843659.1 988933 D 334390 CDS YP_001843660.1 184155320 6232292 991163..993058 1 NC_010610.1 DNA primase 993058 6232292 LAF_0844 Lactobacillus fermentum IFO 3956 DNA primase YP_001843660.1 991163 D 334390 CDS YP_001843661.1 184155321 6232293 993058..994200 1 NC_010610.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 994200 6232293 LAF_0845 Lactobacillus fermentum IFO 3956 RNA polymerase sigma factor RpoD YP_001843661.1 993058 D 334390 CDS YP_001843662.1 184155322 6232294 complement(994583..995425) 1 NC_010610.1 transposase 995425 6232294 LAF_0846 Lactobacillus fermentum IFO 3956 transposase YP_001843662.1 994583 R 334390 CDS YP_001843663.1 184155323 6232295 complement(995479..995730) 1 NC_010610.1 transposase 995730 6232295 LAF_0847 Lactobacillus fermentum IFO 3956 transposase YP_001843663.1 995479 R 334390 CDS YP_001843664.1 184155324 6232296 996811..997353 1 NC_010610.1 hypothetical protein 997353 6232296 LAF_0848 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843664.1 996811 D 334390 CDS YP_001843665.1 184155325 6232297 997368..997619 1 NC_010610.1 hypothetical protein 997619 6232297 LAF_0849 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843665.1 997368 D 334390 CDS YP_001843666.1 184155326 6232298 998059..999345 1 NC_010610.1 transposase 999345 6232298 LAF_0850 Lactobacillus fermentum IFO 3956 transposase YP_001843666.1 998059 D 334390 CDS YP_001843667.1 184155327 6232299 999578..1000489 1 NC_010610.1 thiamine biosynthesis protein 1000489 6232299 LAF_0851 Lactobacillus fermentum IFO 3956 thiamine biosynthesis protein YP_001843667.1 999578 D 334390 CDS YP_001843668.1 184155328 6232300 complement(1000692..1001699) 1 NC_010610.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1001699 dapF 6232300 dapF Lactobacillus fermentum IFO 3956 diaminopimelate epimerase YP_001843668.1 1000692 R 334390 CDS YP_001843669.1 184155329 6232301 complement(1001712..1003070) 1 NC_010610.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1003070 6232301 LAF_0853 Lactobacillus fermentum IFO 3956 aspartate kinase YP_001843669.1 1001712 R 334390 CDS YP_001843670.1 184155330 6232302 1003542..1004861 1 NC_010610.1 diaminopimelate decarboxylase 1004861 6232302 LAF_0854 Lactobacillus fermentum IFO 3956 diaminopimelate decarboxylase YP_001843670.1 1003542 D 334390 CDS YP_001843671.1 184155331 6232303 1004886..1005599 1 NC_010610.1 2,3,4,5-tetrahydropyridine-2-carboxylate 1005599 6232303 LAF_0855 Lactobacillus fermentum IFO 3956 2,3,4,5-tetrahydropyridine-2-carboxylate YP_001843671.1 1004886 D 334390 CDS YP_001843672.1 184155332 6232304 1005599..1006753 1 NC_010610.1 amidohydrolase 1006753 6232304 LAF_0856 Lactobacillus fermentum IFO 3956 amidohydrolase YP_001843672.1 1005599 D 334390 CDS YP_001843673.1 184155333 6232305 1006756..1007691 1 NC_010610.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1007691 6232305 LAF_0857 Lactobacillus fermentum IFO 3956 dihydrodipicolinate synthase YP_001843673.1 1006756 D 334390 CDS YP_001843674.1 184155334 6232306 1007684..1008463 1 NC_010610.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1008463 6232306 LAF_0858 Lactobacillus fermentum IFO 3956 dihydrodipicolinate reductase YP_001843674.1 1007684 D 334390 CDS YP_001843675.1 184155335 6232307 1008488..1009672 1 NC_010610.1 amino acid aminotransferase 1009672 6232307 LAF_0859 Lactobacillus fermentum IFO 3956 amino acid aminotransferase YP_001843675.1 1008488 D 334390 CDS YP_001843676.1 184155336 6232308 1009687..1010739 1 NC_010610.1 aspartate-semialdehyde dehydrogenase 1010739 6232308 LAF_0860 Lactobacillus fermentum IFO 3956 aspartate-semialdehyde dehydrogenase YP_001843676.1 1009687 D 334390 CDS YP_001843677.1 184155337 6232309 1010875..1012215 1 NC_010610.1 potassium transport protein 1012215 6232309 LAF_0861 Lactobacillus fermentum IFO 3956 potassium transport protein YP_001843677.1 1010875 D 334390 CDS YP_001843678.1 184155338 6232310 1012208..1012882 1 NC_010610.1 potassium transport protein 1012882 6232310 LAF_0862 Lactobacillus fermentum IFO 3956 potassium transport protein YP_001843678.1 1012208 D 334390 CDS YP_001843679.1 184155339 6232311 1012891..1013592 1 NC_010610.1 hypothetical protein 1013592 6232311 LAF_0863 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843679.1 1012891 D 334390 CDS YP_001843680.1 184155340 6232312 1013585..1014406 1 NC_010610.1 hypothetical protein 1014406 6232312 LAF_0864 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843680.1 1013585 D 334390 CDS YP_001843681.1 184155341 6232313 1014426..1015667 1 NC_010610.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1015667 6232313 LAF_0865 Lactobacillus fermentum IFO 3956 peptidase T YP_001843681.1 1014426 D 334390 CDS YP_001843682.1 184155342 6232314 complement(1015739..1015966) 1 NC_010610.1 hypothetical protein 1015966 6232314 LAF_0866 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843682.1 1015739 R 334390 CDS YP_001843683.1 184155343 6232315 1016057..1019356 1 NC_010610.1 DNA-directed DNA polymerase III subunit alpha 1019356 6232315 LAF_0867 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase III subunit alpha YP_001843683.1 1016057 D 334390 CDS YP_001843684.1 184155344 6232316 1019494..1020915 1 NC_010610.1 pyruvate kinase 1020915 6232316 LAF_0868 Lactobacillus fermentum IFO 3956 pyruvate kinase YP_001843684.1 1019494 D 334390 CDS YP_001843685.1 184155345 6232317 1021071..1021958 1 NC_010610.1 hypothetical protein 1021958 6232317 LAF_0869 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843685.1 1021071 D 334390 CDS YP_001843686.1 184155346 6232318 1021951..1022829 1 NC_010610.1 integrase 1022829 6232318 LAF_0870 Lactobacillus fermentum IFO 3956 integrase YP_001843686.1 1021951 D 334390 CDS YP_001843687.1 184155347 6232319 1022810..1023193 1 NC_010610.1 hypothetical protein 1023193 6232319 LAF_0871 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843687.1 1022810 D 334390 CDS YP_001843688.1 184155348 6232320 1023186..1023974 1 NC_010610.1 hypothetical protein 1023974 6232320 LAF_0872 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843688.1 1023186 D 334390 CDS YP_001843689.1 184155349 6232321 1023952..1024539 1 NC_010610.1 hypothetical protein 1024539 6232321 LAF_0873 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843689.1 1023952 D 334390 CDS YP_001843690.1 184155350 6232322 1024540..1025265 1 NC_010610.1 pseudouridine synthase 1025265 6232322 LAF_0874 Lactobacillus fermentum IFO 3956 pseudouridine synthase YP_001843690.1 1024540 D 334390 CDS YP_001843691.1 184155351 6232323 1025537..1026115 1 NC_010610.1 hypothetical protein 1026115 6232323 LAF_0875 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843691.1 1025537 D 334390 CDS YP_001843692.1 184155352 6232324 1026267..1027379 1 NC_010610.1 hypothetical protein 1027379 6232324 LAF_0876 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843692.1 1026267 D 334390 CDS YP_001843693.1 184155353 6232325 1027369..1028826 1 NC_010610.1 DNA helicase 1028826 6232325 LAF_0877 Lactobacillus fermentum IFO 3956 DNA helicase YP_001843693.1 1027369 D 334390 CDS YP_001843694.1 184155354 6232326 1028878..1029441 1 NC_010610.1 hypothetical protein 1029441 6232326 LAF_0878 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843694.1 1028878 D 334390 CDS YP_001843695.1 184155355 6232327 1029465..1030145 1 NC_010610.1 cytidylate kinase 1030145 6232327 LAF_0879 Lactobacillus fermentum IFO 3956 cytidylate kinase YP_001843695.1 1029465 D 334390 CDS YP_001843696.1 184155356 6232328 1030222..1031454 1 NC_010610.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1031454 rpsA 6232328 rpsA Lactobacillus fermentum IFO 3956 30S ribosomal protein S1 YP_001843696.1 1030222 D 334390 CDS YP_001843697.1 184155357 6232329 1031532..1032845 1 NC_010610.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1032845 engA 6232329 engA Lactobacillus fermentum IFO 3956 GTP-binding protein EngA YP_001843697.1 1031532 D 334390 CDS YP_001843698.1 184155358 6232330 1033069..1033344 1 NC_010610.1 DNA-binding protein 1033344 6232330 LAF_0882 Lactobacillus fermentum IFO 3956 DNA-binding protein YP_001843698.1 1033069 D 334390 CDS YP_001843699.1 184155359 6232331 1033423..1034685 1 NC_010610.1 hypothetical protein 1034685 6232331 LAF_0883 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843699.1 1033423 D 334390 CDS YP_001843700.1 184155360 6232332 complement(1034799..1035740) 1 NC_010610.1 hypothetical protein 1035740 6232332 LAF_0884 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843700.1 1034799 R 334390 CDS YP_001843701.1 184155361 6232333 1035822..1037024 1 NC_010610.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1037024 6232333 LAF_0885 Lactobacillus fermentum IFO 3956 tRNA CCA-pyrophosphorylase YP_001843701.1 1035822 D 334390 CDS YP_001843702.1 184155362 6232334 1037037..1038923 1 NC_010610.1 ABC transporter ATP-binding protein 1038923 6232334 LAF_0886 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843702.1 1037037 D 334390 CDS YP_001843703.1 184155363 6232335 1038989..1039948 1 NC_010610.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1039948 thyA 6232335 thyA Lactobacillus fermentum IFO 3956 thymidylate synthase YP_001843703.1 1038989 D 334390 CDS YP_001843704.1 184155364 6232336 1039960..1040463 1 NC_010610.1 dihydrofolate reductase 1040463 6232336 LAF_0888 Lactobacillus fermentum IFO 3956 dihydrofolate reductase YP_001843704.1 1039960 D 334390 CDS YP_001843705.1 184155365 6232337 complement(1040443..1041072) 1 NC_010610.1 hemolysin III 1041072 6232337 LAF_0889 Lactobacillus fermentum IFO 3956 hemolysin III YP_001843705.1 1040443 R 334390 CDS YP_001843706.1 184155366 6232338 1041239..1042081 1 NC_010610.1 hypothetical protein 1042081 6232338 LAF_0890 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843706.1 1041239 D 334390 CDS YP_001843707.1 184155367 6232339 complement(1042215..1043393) 1 NC_010610.1 D-3-phosphoglycerate dehydrogenase 1043393 6232339 LAF_0891 Lactobacillus fermentum IFO 3956 D-3-phosphoglycerate dehydrogenase YP_001843707.1 1042215 R 334390 CDS YP_001843708.1 184155368 6232340 1043463..1044089 1 NC_010610.1 hypothetical protein 1044089 6232340 LAF_0892 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843708.1 1043463 D 334390 CDS YP_001843709.1 184155369 6232341 1044220..1045137 1 NC_010610.1 hypothetical protein 1045137 6232341 LAF_0893 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843709.1 1044220 D 334390 CDS YP_001843710.1 184155370 6232342 1045141..1045734 1 NC_010610.1 hypothetical protein 1045734 6232342 LAF_0894 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843710.1 1045141 D 334390 CDS YP_001843711.1 184155371 6232343 1045744..1045968 1 NC_010610.1 hypothetical protein 1045968 6232343 LAF_0895 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843711.1 1045744 D 334390 CDS YP_001843712.1 184155372 6232344 1045979..1046851 1 NC_010610.1 GTPase 1046851 6232344 LAF_0896 Lactobacillus fermentum IFO 3956 GTPase YP_001843712.1 1045979 D 334390 CDS YP_001843713.1 184155373 6232345 1046844..1047614 1 NC_010610.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1047614 rnhB 6232345 rnhB Lactobacillus fermentum IFO 3956 ribonuclease HII YP_001843713.1 1046844 D 334390 CDS YP_001843714.1 184155374 6232346 1047667..1048542 1 NC_010610.1 DNA processing protein 1048542 6232346 LAF_0898 Lactobacillus fermentum IFO 3956 DNA processing protein YP_001843714.1 1047667 D 334390 CDS YP_001843715.1 184155375 6232347 1048625..1050757 1 NC_010610.1 DNA topoisomerase I 1050757 6232347 LAF_0899 Lactobacillus fermentum IFO 3956 DNA topoisomerase I YP_001843715.1 1048625 D 334390 CDS YP_001843716.1 184155376 6232348 1050832..1051728 1 NC_010610.1 integrase 1051728 6232348 LAF_0900 Lactobacillus fermentum IFO 3956 integrase YP_001843716.1 1050832 D 334390 CDS YP_001843717.1 184155377 6232349 1051744..1052622 1 NC_010610.1 hypothetical protein 1052622 6232349 LAF_0901 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843717.1 1051744 D 334390 CDS YP_001843718.1 184155378 6232875 complement(1052690..1053301) 1 NC_010610.1 hypothetical protein 1053301 6232875 LAF_0902 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843718.1 1052690 R 334390 CDS YP_001843719.1 184155379 6232876 1053533..1055530 1 NC_010610.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1055530 6232876 LAF_0903 Lactobacillus fermentum IFO 3956 DNA topoisomerase IV subunit B YP_001843719.1 1053533 D 334390 CDS YP_001843720.1 184155380 6232877 1055538..1058015 1 NC_010610.1 topoisomerase IV subunit A 1058015 6232877 LAF_0904 Lactobacillus fermentum IFO 3956 topoisomerase IV subunit A YP_001843720.1 1055538 D 334390 CDS YP_001843721.1 184155381 6232878 1058081..1058596 1 NC_010610.1 hypothetical protein 1058596 6232878 LAF_0905 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843721.1 1058081 D 334390 CDS YP_001843722.1 184155382 6232879 1058707..1059639 1 NC_010610.1 inorganic pyrophosphatase 1059639 6232879 LAF_0906 Lactobacillus fermentum IFO 3956 inorganic pyrophosphatase YP_001843722.1 1058707 D 334390 CDS YP_001843723.1 184155383 6232880 1059824..1060225 1 NC_010610.1 hypothetical protein 1060225 6232880 LAF_0907 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843723.1 1059824 D 334390 CDS YP_001843724.1 184155384 6232881 1060235..1060660 1 NC_010610.1 peptide methionine sulfoxide reductase 1060660 6232881 LAF_0908 Lactobacillus fermentum IFO 3956 peptide methionine sulfoxide reductase YP_001843724.1 1060235 D 334390 CDS YP_001843725.1 184155385 6232882 1060813..1061322 1 NC_010610.1 phosphinothricin N-acetyltransferase 1061322 6232882 LAF_0909 Lactobacillus fermentum IFO 3956 phosphinothricin N-acetyltransferase YP_001843725.1 1060813 D 334390 CDS YP_001843726.1 184155386 6232883 1061285..1061770 1 NC_010610.1 hypothetical protein 1061770 6232883 LAF_0910 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843726.1 1061285 D 334390 CDS YP_001843727.1 184155387 6232884 1061927..1063285 1 NC_010610.1 cytosine transport protein 1063285 6232884 LAF_0911 Lactobacillus fermentum IFO 3956 cytosine transport protein YP_001843727.1 1061927 D 334390 CDS YP_001843728.1 184155388 6232885 1063288..1064526 1 NC_010610.1 cytosine deaminase 1064526 6232885 LAF_0912 Lactobacillus fermentum IFO 3956 cytosine deaminase YP_001843728.1 1063288 D 334390 CDS YP_001843729.1 184155389 6232886 1064674..1066398 1 NC_010610.1 hypothetical protein 1066398 6232886 LAF_0913 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843729.1 1064674 D 334390 CDS YP_001843730.1 184155390 6232887 1066494..1066865 1 NC_010610.1 hypothetical protein 1066865 6232887 LAF_0914 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843730.1 1066494 D 334390 CDS YP_001843731.1 184155391 6232888 1066880..1068226 1 NC_010610.1 recombination factor protein RarA 1068226 6232888 LAF_0915 Lactobacillus fermentum IFO 3956 recombination factor protein RarA YP_001843731.1 1066880 D 334390 CDS YP_001843732.1 184155392 6232889 1068223..1068903 1 NC_010610.1 hypothetical protein 1068903 6232889 LAF_0916 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843732.1 1068223 D 334390 CDS YP_001843733.1 184155393 6232890 1069481..1070839 1 NC_010610.1 oxalate-formate antiporter 1070839 6232890 LAF_0917 Lactobacillus fermentum IFO 3956 oxalate-formate antiporter YP_001843733.1 1069481 D 334390 CDS YP_001843734.1 184155394 6232891 complement(1070992..1072278) 1 NC_010610.1 transposase 1072278 6232891 LAF_0918 Lactobacillus fermentum IFO 3956 transposase YP_001843734.1 1070992 R 334390 CDS YP_001843735.1 184155395 6232892 complement(1072445..1072648) 1 NC_010610.1 hypothetical protein 1072648 6232892 LAF_0919 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843735.1 1072445 R 334390 CDS YP_001843736.1 184155396 6232893 1074392..1075144 1 NC_010610.1 hypothetical protein 1075144 6232893 LAF_0920 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843736.1 1074392 D 334390 CDS YP_001843737.1 184155397 6232894 complement(1075197..1076654) 1 NC_010610.1 arginine-ornithine antiporter 1076654 6232894 LAF_0921 Lactobacillus fermentum IFO 3956 arginine-ornithine antiporter YP_001843737.1 1075197 R 334390 CDS YP_001843738.1 184155398 6232895 complement(1076833..1077864) 1 NC_010610.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1077864 6232895 LAF_0922 Lactobacillus fermentum IFO 3956 branched-chain amino acid aminotransferase YP_001843738.1 1076833 R 334390 CDS YP_001843739.1 184155399 6232896 complement(1078502..1079143) 1 NC_010610.1 acetyltransferase 1079143 6232896 LAF_0923 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843739.1 1078502 R 334390 CDS YP_001843740.1 184155400 6232897 1079257..1079754 1 NC_010610.1 acetyltransferase 1079754 6232897 LAF_0924 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843740.1 1079257 D 334390 CDS YP_001843741.1 184155401 6232898 complement(1079899..1080594) 1 NC_010610.1 hypothetical protein 1080594 6232898 LAF_0925 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843741.1 1079899 R 334390 CDS YP_001843742.1 184155402 6232899 complement(1080802..1081359) 1 NC_010610.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase 1081359 6232899 LAF_0926 Lactobacillus fermentum IFO 3956 adenine phosphoribosyltransferase YP_001843742.1 1080802 R 334390 CDS YP_001843743.1 184155403 6232900 1081697..1083073 1 NC_010610.1 transport protein 1083073 6232900 LAF_0927 Lactobacillus fermentum IFO 3956 transport protein YP_001843743.1 1081697 D 334390 CDS YP_001843744.1 184155404 6232901 1083213..1084298 1 NC_010610.1 ornithine cyclodeaminase 1084298 6232901 LAF_0928 Lactobacillus fermentum IFO 3956 ornithine cyclodeaminase YP_001843744.1 1083213 D 334390 CDS YP_001843745.1 184155405 6232902 1084310..1085446 1 NC_010610.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 1085446 6232902 LAF_0929 Lactobacillus fermentum IFO 3956 transaminase YP_001843745.1 1084310 D 334390 CDS YP_001843746.1 184155406 6232903 1085637..1085786 1 NC_010610.1 hypothetical protein 1085786 6232903 LAF_0930 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843746.1 1085637 D 334390 CDS YP_001843747.1 184155407 6232904 1086205..1086900 1 NC_010610.1 hypothetical protein 1086900 6232904 LAF_0931 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843747.1 1086205 D 334390 CDS YP_001843748.1 184155408 6232905 complement(1087617..1088507) 1 NC_010610.1 hypothetical protein 1088507 6232905 LAF_0932 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843748.1 1087617 R 334390 CDS YP_001843749.1 184155409 6232906 complement(1088526..1089050) 1 NC_010610.1 acetyltransferase 1089050 6232906 LAF_0933 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843749.1 1088526 R 334390 CDS YP_001843750.1 184155410 6232907 complement(1089162..1089344) 1 NC_010610.1 hypothetical protein 1089344 6232907 LAF_0934 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843750.1 1089162 R 334390 CDS YP_001843751.1 184155411 6232908 1089398..1090324 1 NC_010610.1 hypothetical protein 1090324 6232908 LAF_0935 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843751.1 1089398 D 334390 CDS YP_001843752.1 184155412 6232909 complement(1090358..1091269) 1 NC_010610.1 oxidoreductase 1091269 6232909 LAF_0936 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001843752.1 1090358 R 334390 CDS YP_001843753.1 184155413 6232910 complement(1091323..1091817) 1 NC_010610.1 hypothetical protein 1091817 6232910 LAF_0937 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843753.1 1091323 R 334390 CDS YP_001843754.1 184155414 6232911 complement(1091824..1092654) 1 NC_010610.1 pyridoxal kinase 1092654 6232911 LAF_0938 Lactobacillus fermentum IFO 3956 pyridoxal kinase YP_001843754.1 1091824 R 334390 CDS YP_001843755.1 184155415 6232912 complement(1092841..1094094) 1 NC_010610.1 isocitrate dehydrogenase 1094094 6232912 LAF_0939 Lactobacillus fermentum IFO 3956 isocitrate dehydrogenase YP_001843755.1 1092841 R 334390 CDS YP_001843756.1 184155416 6232913 1094855..1095934 1 NC_010610.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1095934 xerS 6232913 xerS Lactobacillus fermentum IFO 3956 site-specific tyrosine recombinase XerS YP_001843756.1 1094855 D 334390 CDS YP_001843757.1 184155417 6232914 1095936..1096862 1 NC_010610.1 choloylglycine hydrolase 1096862 6232914 LAF_0941 Lactobacillus fermentum IFO 3956 choloylglycine hydrolase YP_001843757.1 1095936 D 334390 CDS YP_001843758.1 184155418 6232915 complement(1096890..1098068) 1 NC_010610.1 aminotransferase 1098068 6232915 LAF_0942 Lactobacillus fermentum IFO 3956 aminotransferase YP_001843758.1 1096890 R 334390 CDS YP_001843759.1 184155419 6232916 1098494..1099546 1 NC_010610.1 dehydrogenase 1099546 6232916 LAF_0943 Lactobacillus fermentum IFO 3956 dehydrogenase YP_001843759.1 1098494 D 334390 CDS YP_001843760.1 184155420 6232917 complement(1099639..1100598) 1 NC_010610.1 oxidoreductase 1100598 6232917 LAF_0944 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001843760.1 1099639 R 334390 CDS YP_001843761.1 184155421 6232918 complement(1100614..1101243) 1 NC_010610.1 glycine/betaine ABC transporter permease 1101243 6232918 LAF_0945 Lactobacillus fermentum IFO 3956 glycine/betaine ABC transporter permease YP_001843761.1 1100614 R 334390 CDS YP_001843762.1 184155422 6232919 complement(1101240..1102007) 1 NC_010610.1 glycine/betaine ABC transporter ATP-binding protein 1102007 6232919 LAF_0946 Lactobacillus fermentum IFO 3956 glycine/betaine ABC transporter ATP-binding protein YP_001843762.1 1101240 R 334390 CDS YP_001843763.1 184155423 6232920 complement(1101988..1102671) 1 NC_010610.1 glycine/betaine ABC transporter permease 1102671 6232920 LAF_0947 Lactobacillus fermentum IFO 3956 glycine/betaine ABC transporter permease YP_001843763.1 1101988 R 334390 CDS YP_001843764.1 184155424 6232921 complement(1102783..1103685) 1 NC_010610.1 glycine/betaine ABC transporter substrate-binding protein 1103685 6232921 LAF_0948 Lactobacillus fermentum IFO 3956 glycine/betaine ABC transporter substrate-binding protein YP_001843764.1 1102783 R 334390 CDS YP_001843765.1 184155425 6232922 1103826..1104275 1 NC_010610.1 transcription regulator 1104275 6232922 LAF_0949 Lactobacillus fermentum IFO 3956 transcription regulator YP_001843765.1 1103826 D 334390 CDS YP_001843766.1 184155426 6232923 complement(1104313..1104738) 1 NC_010610.1 hypothetical protein 1104738 6232923 LAF_0950 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843766.1 1104313 R 334390 CDS YP_001843767.1 184155427 6232924 complement(1104738..1105160) 1 NC_010610.1 acetyltransferase 1105160 6232924 LAF_0951 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843767.1 1104738 R 334390 CDS YP_001843768.1 184155428 6232925 complement(1105352..1105486) 1 NC_010610.1 hypothetical protein 1105486 6232925 LAF_0952 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843768.1 1105352 R 334390 CDS YP_001843769.1 184155429 6232926 complement(1105535..1105780) 1 NC_010610.1 hypothetical protein 1105780 6232926 LAF_0953 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843769.1 1105535 R 334390 CDS YP_001843770.1 184155430 6232927 complement(1105865..1106470) 1 NC_010610.1 oxidoreductase 1106470 6232927 LAF_0954 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001843770.1 1105865 R 334390 CDS YP_001843771.1 184155431 6232928 complement(1106527..1106811) 1 NC_010610.1 hypothetical protein 1106811 6232928 LAF_0955 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843771.1 1106527 R 334390 CDS YP_001843772.1 184155432 6232929 complement(1106824..1107150) 1 NC_010610.1 hypothetical protein 1107150 6232929 LAF_0956 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843772.1 1106824 R 334390 CDS YP_001843773.1 184155433 6232930 complement(1107232..1107852) 1 NC_010610.1 hypothetical protein 1107852 6232930 LAF_0957 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843773.1 1107232 R 334390 CDS YP_001843774.1 184155434 6232931 complement(1108162..1109064) 1 NC_010610.1 transport protein 1109064 6232931 LAF_0958 Lactobacillus fermentum IFO 3956 transport protein YP_001843774.1 1108162 R 334390 CDS YP_001843775.1 184155435 6232932 complement(1109170..1109469) 1 NC_010610.1 hypothetical protein 1109469 6232932 LAF_0959 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843775.1 1109170 R 334390 CDS YP_001843776.1 184155436 6232933 complement(1110415..1110615) 1 NC_010610.1 dehydrogenase 1110615 6232933 LAF_0960 Lactobacillus fermentum IFO 3956 dehydrogenase YP_001843776.1 1110415 R 334390 CDS YP_001843777.1 184155437 6232934 complement(1112974..1113198) 1 NC_010610.1 hypothetical protein 1113198 6232934 LAF_0961 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843777.1 1112974 R 334390 CDS YP_001843778.1 184155438 6232935 complement(1114380..1115153) 1 NC_010610.1 hypothetical protein 1115153 6232935 LAF_0962 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843778.1 1114380 R 334390 CDS YP_001843779.1 184155439 6232936 complement(1115174..1115758) 1 NC_010610.1 3-isopropylmalate dehydratase small subunit 1115758 6232936 LAF_0963 Lactobacillus fermentum IFO 3956 3-isopropylmalate dehydratase small subunit YP_001843779.1 1115174 R 334390 CDS YP_001843780.1 184155440 6232937 complement(1115763..1117160) 1 NC_010610.1 3-isopropylmalate dehydratase large subunit 1117160 6232937 LAF_0964 Lactobacillus fermentum IFO 3956 3-isopropylmalate dehydratase large subunit YP_001843780.1 1115763 R 334390 CDS YP_001843781.1 184155441 6232938 complement(1117160..1118206) 1 NC_010610.1 3-isopropylmalate dehydrogenase 1118206 6232938 LAF_0965 Lactobacillus fermentum IFO 3956 3-isopropylmalate dehydrogenase YP_001843781.1 1117160 R 334390 CDS YP_001843782.1 184155442 6232939 complement(1118219..1119559) 1 NC_010610.1 transport protein 1119559 6232939 LAF_0966 Lactobacillus fermentum IFO 3956 transport protein YP_001843782.1 1118219 R 334390 CDS YP_001843783.1 184155443 6232940 complement(1120528..1120755) 1 NC_010610.1 hypothetical protein 1120755 6232940 LAF_0967 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843783.1 1120528 R 334390 CDS YP_001843784.1 184155444 6232941 complement(1120802..1121182) 1 NC_010610.1 hypothetical protein 1121182 6232941 LAF_0968 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843784.1 1120802 R 334390 CDS YP_001843785.1 184155445 6232942 1121217..1122038 1 NC_010610.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1122038 6232942 LAF_0969 Lactobacillus fermentum IFO 3956 naphthoate synthase YP_001843785.1 1121217 D 334390 CDS YP_001843786.1 184155446 6232410 1122048..1123472 1 NC_010610.1 O-succinylbenzoate-CoA ligase 1123472 6232410 LAF_0970 Lactobacillus fermentum IFO 3956 O-succinylbenzoate-CoA ligase YP_001843786.1 1122048 D 334390 CDS YP_001843787.1 184155447 6232961 1123520..1124713 1 NC_010610.1 transport protein 1124713 6232961 LAF_0971 Lactobacillus fermentum IFO 3956 transport protein YP_001843787.1 1123520 D 334390 CDS YP_001843788.1 184155448 6232024 1124944..1126014 1 NC_010610.1 alcohol dehydrogenase 1126014 6232024 LAF_0972 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001843788.1 1124944 D 334390 CDS YP_001843789.1 184155449 6232025 complement(1126236..1127378) 1 NC_010610.1 cystathionine beta-lyase 1127378 6232025 LAF_0973 Lactobacillus fermentum IFO 3956 cystathionine beta-lyase YP_001843789.1 1126236 R 334390 CDS YP_001843790.1 184155450 6232026 complement(1127391..1128302) 1 NC_010610.1 cysteine synthase 1128302 6232026 LAF_0974 Lactobacillus fermentum IFO 3956 cysteine synthase YP_001843790.1 1127391 R 334390 CDS YP_001843791.1 184155451 6232027 1128635..1128910 1 NC_010610.1 ACT domain-containing protein; hypothetical protein 1128910 6232027 LAF_0975 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843791.1 1128635 D 334390 CDS YP_001843792.1 184155452 6232028 1128920..1130263 1 NC_010610.1 hypothetical protein 1130263 6232028 LAF_0976 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843792.1 1128920 D 334390 CDS YP_001843793.1 184155453 6232029 complement(1130454..1131410) 1 NC_010610.1 hypothetical protein 1131410 6232029 LAF_0977 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843793.1 1130454 R 334390 CDS YP_001843794.1 184155454 6232030 1131467..1131859 1 NC_010610.1 hypothetical protein 1131859 6232030 LAF_0978 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843794.1 1131467 D 334390 CDS YP_001843795.1 184155455 6232031 complement(1132081..1132281) 1 NC_010610.1 hypothetical protein 1132281 6232031 LAF_0979 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843795.1 1132081 R 334390 CDS YP_001843796.1 184155456 6232032 complement(1132286..1133347) 1 NC_010610.1 hypothetical protein 1133347 6232032 LAF_0980 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843796.1 1132286 R 334390 CDS YP_001843797.1 184155457 6232033 1134861..1135847 1 NC_010610.1 transposase 1135847 6232033 LAF_0981 Lactobacillus fermentum IFO 3956 transposase YP_001843797.1 1134861 D 334390 CDS YP_001843798.1 184155458 6232034 complement(1135930..1136316) 1 NC_010610.1 hypothetical protein 1136316 6232034 LAF_0982 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843798.1 1135930 R 334390 CDS YP_001843799.1 184155459 6232035 complement(1136366..1137040) 1 NC_010610.1 transport protein 1137040 6232035 LAF_0983 Lactobacillus fermentum IFO 3956 transport protein YP_001843799.1 1136366 R 334390 CDS YP_001843800.1 184155460 6232036 complement(1137098..1137283) 1 NC_010610.1 hypothetical protein 1137283 6232036 LAF_0985 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843800.1 1137098 R 334390 CDS YP_001843801.1 184155461 6232038 1137175..1138110 1 NC_010610.1 hypothetical protein 1138110 6232038 LAF_0984 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843801.1 1137175 D 334390 CDS YP_001843802.1 184155462 6232037 complement(1138217..1140070) 1 NC_010610.1 hypothetical protein 1140070 6232037 LAF_0986 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843802.1 1138217 R 334390 CDS YP_001843803.1 184155463 6232039 1140187..1141122 1 NC_010610.1 transcriptional regulator 1141122 6232039 LAF_0987 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843803.1 1140187 D 334390 CDS YP_001843804.1 184155464 6232040 1141219..1142076 1 NC_010610.1 hypothetical protein 1142076 6232040 LAF_0988 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843804.1 1141219 D 334390 CDS YP_001843805.1 184155465 6232041 1142171..1143343 1 NC_010610.1 acetyl-CoA acetyltransferase 1143343 6232041 LAF_0989 Lactobacillus fermentum IFO 3956 acetyl-CoA acetyltransferase YP_001843805.1 1142171 D 334390 CDS YP_001843806.1 184155466 6232042 1143353..1144453 1 NC_010610.1 transport protein 1144453 6232042 LAF_0990 Lactobacillus fermentum IFO 3956 transport protein YP_001843806.1 1143353 D 334390 CDS YP_001843807.1 184155467 6232043 1144533..1145273 1 NC_010610.1 transport protein 1145273 6232043 LAF_0991 Lactobacillus fermentum IFO 3956 transport protein YP_001843807.1 1144533 D 334390 CDS YP_001843808.1 184155468 6232044 complement(1145467..1145964) 1 NC_010610.1 low temperature requirement C protein 1145964 6232044 LAF_0992 Lactobacillus fermentum IFO 3956 low temperature requirement C protein YP_001843808.1 1145467 R 334390 CDS YP_001843809.1 184155469 6232045 complement(1145977..1147029) 1 NC_010610.1 hypothetical protein 1147029 6232045 LAF_0993 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843809.1 1145977 R 334390 CDS YP_001843810.1 184155470 6232046 complement(1147026..1148225) 1 NC_010610.1 hypothetical protein 1148225 6232046 LAF_0994 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843810.1 1147026 R 334390 CDS YP_001843811.1 184155471 6232047 complement(1148241..1148417) 1 NC_010610.1 hypothetical protein 1148417 6232047 LAF_0995 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843811.1 1148241 R 334390 CDS YP_001843812.1 184155472 6232048 complement(1148425..1149288) 1 NC_010610.1 hypothetical protein 1149288 6232048 LAF_0996 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843812.1 1148425 R 334390 CDS YP_001843813.1 184155473 6232049 complement(1149421..1151769) 1 NC_010610.1 hypothetical protein 1151769 6232049 LAF_0997 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843813.1 1149421 R 334390 CDS YP_001843814.1 184155474 6232050 1152156..1153043 1 NC_010610.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 1153043 6232050 LAF_0998 Lactobacillus fermentum IFO 3956 3-hydroxybutyryl-CoA dehydrogenase YP_001843814.1 1152156 D 334390 CDS YP_001843815.1 184155475 6232051 complement(1153134..1154021) 1 NC_010610.1 DNA-entry nuclease 1154021 6232051 LAF_0999 Lactobacillus fermentum IFO 3956 DNA-entry nuclease YP_001843815.1 1153134 R 334390 CDS YP_001843816.1 184155476 6232052 complement(1154096..1155466) 1 NC_010610.1 dipeptidase 1155466 6232052 LAF_1000 Lactobacillus fermentum IFO 3956 dipeptidase YP_001843816.1 1154096 R 334390 CDS YP_001843817.1 184155477 6232053 complement(1155466..1156197) 1 NC_010610.1 hypothetical protein 1156197 6232053 LAF_1001 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843817.1 1155466 R 334390 CDS YP_001843818.1 184155478 6232054 complement(1156261..1157247) 1 NC_010610.1 transposase 1157247 6232054 LAF_1002 Lactobacillus fermentum IFO 3956 transposase YP_001843818.1 1156261 R 334390 CDS YP_001843819.1 184155479 6232055 complement(1157414..1158799) 1 NC_010610.1 amino acid transporter 1158799 6232055 LAF_1003 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001843819.1 1157414 R 334390 CDS YP_001843820.1 184155480 6232056 complement(1159074..1160036) 1 NC_010610.1 hypothetical protein 1160036 6232056 LAF_1004 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843820.1 1159074 R 334390 CDS YP_001843821.1 184155481 6232057 complement(1160353..1162131) 1 NC_010610.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1162131 6232057 LAF_1005 Lactobacillus fermentum IFO 3956 1-deoxy-D-xylulose-5-phosphate synthase YP_001843821.1 1160353 R 334390 CDS YP_001843822.1 184155482 6232058 1162291..1163526 1 NC_010610.1 hypothetical protein 1163526 6232058 LAF_1006 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843822.1 1162291 D 334390 CDS YP_001843823.1 184155483 6232059 1163530..1163823 1 NC_010610.1 hypothetical protein 1163823 6232059 LAF_1007 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843823.1 1163530 D 334390 CDS YP_001843824.1 184155484 6232060 complement(1164304..1164741) 1 NC_010610.1 nucleoside diphosphate kinase 1164741 6232060 LAF_1008 Lactobacillus fermentum IFO 3956 nucleoside diphosphate kinase YP_001843824.1 1164304 R 334390 CDS YP_001843825.1 184155485 6232061 complement(1164747..1165289) 1 NC_010610.1 hypothetical protein 1165289 6232061 LAF_1009 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843825.1 1164747 R 334390 CDS YP_001843826.1 184155486 6232062 complement(1165742..1166014) 1 NC_010610.1 hypothetical protein 1166014 6232062 LAF_1010 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843826.1 1165742 R 334390 CDS YP_001843827.1 184155487 6232063 complement(1166154..1167269) 1 NC_010610.1 hypothetical protein 1167269 6232063 LAF_1011 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843827.1 1166154 R 334390 CDS YP_001843828.1 184155488 6233553 complement(1167749..1168579) 1 NC_010610.1 amino acid ABC transporter substrate-binding protein 1168579 6233553 LAF_1012 Lactobacillus fermentum IFO 3956 amino acid ABC transporter substrate-binding protein YP_001843828.1 1167749 R 334390 CDS YP_001843829.1 184155489 6232065 1170517..1171701 1 NC_010610.1 aminotransferase 1171701 6232065 LAF_1013 Lactobacillus fermentum IFO 3956 aminotransferase YP_001843829.1 1170517 D 334390 CDS YP_001843830.1 184155490 6232066 complement(1171877..1173208) 1 NC_010610.1 chlorohydrolase family protein 1173208 6232066 LAF_1014 Lactobacillus fermentum IFO 3956 chlorohydrolase family protein YP_001843830.1 1171877 R 334390 CDS YP_001843831.1 184155491 6232067 complement(1173330..1174481) 1 NC_010610.1 succinyl-diaminopimelate desuccinylase 1174481 6232067 LAF_1015 Lactobacillus fermentum IFO 3956 succinyl-diaminopimelate desuccinylase YP_001843831.1 1173330 R 334390 CDS YP_001843832.1 184155492 6232068 complement(1174738..1174887) 1 NC_010610.1 hypothetical protein 1174887 6232068 LAF_1016 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843832.1 1174738 R 334390 CDS YP_001843833.1 184155493 6232069 complement(1175390..1175728) 1 NC_010610.1 arsenate reductase 1175728 6232069 LAF_1017 Lactobacillus fermentum IFO 3956 arsenate reductase YP_001843833.1 1175390 R 334390 CDS YP_001843834.1 184155494 6232070 complement(1175803..1176408) 1 NC_010610.1 glycerophosphodiester phosphodiesterase 1176408 6232070 LAF_1018 Lactobacillus fermentum IFO 3956 glycerophosphodiester phosphodiesterase YP_001843834.1 1175803 R 334390 CDS YP_001843835.1 184155495 6232071 1177112..1177618 1 NC_010610.1 transcription regulator 1177618 6232071 LAF_1019 Lactobacillus fermentum IFO 3956 transcription regulator YP_001843835.1 1177112 D 334390 CDS YP_001843836.1 184155496 6232072 complement(1177670..1178437) 1 NC_010610.1 hypothetical protein 1178437 6232072 LAF_1020 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843836.1 1177670 R 334390 CDS YP_001843837.1 184155497 6232073 complement(1178430..1179071) 1 NC_010610.1 ABC transporter ATP-binding protein 1179071 6232073 LAF_1021 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843837.1 1178430 R 334390 CDS YP_001843838.1 184155498 6232074 complement(1179464..1181146) 1 NC_010610.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 1181146 6232074 LAF_1022 Lactobacillus fermentum IFO 3956 acetolactate synthase YP_001843838.1 1179464 R 334390 CDS YP_001843839.1 184155499 6232075 complement(1181630..1183354) 1 NC_010610.1 hypothetical protein 1183354 6232075 LAF_1023 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843839.1 1181630 R 334390 CDS YP_001843840.1 184155500 6232076 complement(1183440..1184192) 1 NC_010610.1 hypothetical protein 1184192 6232076 LAF_1024 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843840.1 1183440 R 334390 CDS YP_001843841.1 184155501 6232077 1184320..1184934 1 NC_010610.1 hypothetical protein 1184934 6232077 LAF_1025 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843841.1 1184320 D 334390 CDS YP_001843842.1 184155502 6232078 complement(1187874..1189247) 1 NC_010610.1 type I site-specific deoxyribonuclease 1189247 6232078 LAF_1026 Lactobacillus fermentum IFO 3956 type I site-specific deoxyribonuclease YP_001843842.1 1187874 R 334390 CDS YP_001843843.1 184155503 6232079 complement(1190611..1192149) 1 NC_010610.1 hypothetical protein 1192149 6232079 LAF_1027 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843843.1 1190611 R 334390 CDS YP_001843844.1 184155504 6232080 complement(1192190..1192351) 1 NC_010610.1 hypothetical protein 1192351 6232080 LAF_1028 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843844.1 1192190 R 334390 CDS YP_001843845.1 184155505 6232735 complement(1192873..1193205) 1 NC_010610.1 hypothetical protein 1193205 6232735 LAF_1029 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843845.1 1192873 R 334390 CDS YP_001843846.1 184155506 6232825 complement(1193202..1193567) 1 NC_010610.1 hypothetical protein 1193567 6232825 LAF_1030 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843846.1 1193202 R 334390 CDS YP_001843847.1 184155507 6232826 1193655..1194083 1 NC_010610.1 hypothetical protein 1194083 6232826 LAF_1031 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843847.1 1193655 D 334390 CDS YP_001843848.1 184155508 6232827 1194158..1194715 1 NC_010610.1 acetyltransferase 1194715 6232827 LAF_1032 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843848.1 1194158 D 334390 CDS YP_001843849.1 184155509 6232828 1194975..1196705 1 NC_010610.1 hypothetical protein 1196705 6232828 LAF_1033 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843849.1 1194975 D 334390 CDS YP_001843850.1 184155510 6232829 1196674..1197465 1 NC_010610.1 hypothetical protein 1197465 6232829 LAF_1034 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843850.1 1196674 D 334390 CDS YP_001843851.1 184155511 6232830 complement(1197754..1198671) 1 NC_010610.1 transcriptional regulator 1198671 6232830 LAF_1035 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843851.1 1197754 R 334390 CDS YP_001843852.1 184155512 6232831 1198743..1199018 1 NC_010610.1 hypothetical protein 1199018 6232831 LAF_1036 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843852.1 1198743 D 334390 CDS YP_001843853.1 184155513 6232832 complement(1199045..1199503) 1 NC_010610.1 transcriptional regulator 1199503 6232832 LAF_1037 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843853.1 1199045 R 334390 CDS YP_001843854.1 184155514 6232833 complement(1200098..1201201) 1 NC_010610.1 integrase 1201201 6232833 LAF_1038 Lactobacillus fermentum IFO 3956 integrase YP_001843854.1 1200098 R 334390 CDS YP_001843855.1 184155515 6232834 1201594..1202781 1 NC_010610.1 transposase 1202781 6232834 LAF_1039 Lactobacillus fermentum IFO 3956 transposase YP_001843855.1 1201594 D 334390 CDS YP_001843856.1 184155516 6232835 complement(1205042..1206934) 1 NC_010610.1 helicase 1206934 6232835 LAF_1040 Lactobacillus fermentum IFO 3956 helicase YP_001843856.1 1205042 R 334390 CDS YP_001843857.1 184155517 6232836 1208606..1209214 1 NC_010610.1 transposase 1209214 6232836 LAF_1041 Lactobacillus fermentum IFO 3956 transposase YP_001843857.1 1208606 D 334390 CDS YP_001843858.1 184155518 6232837 complement(1209912..1212887) 1 NC_010610.1 restriction endonuclease 1212887 6232837 LAF_1042 Lactobacillus fermentum IFO 3956 restriction endonuclease YP_001843858.1 1209912 R 334390 CDS YP_001843859.1 184155519 6232838 complement(1212892..1214613) 1 NC_010610.1 methyltransferase 1214613 6232838 LAF_1043 Lactobacillus fermentum IFO 3956 methyltransferase YP_001843859.1 1212892 R 334390 CDS YP_001843860.1 184155520 6232839 complement(1214754..1215677) 1 NC_010610.1 transposase 1215677 6232839 LAF_1044 Lactobacillus fermentum IFO 3956 transposase YP_001843860.1 1214754 R 334390 CDS YP_001843861.1 184155521 6232840 complement(1216572..1217093) 1 NC_010610.1 cation-transport ATPase 1217093 6232840 LAF_1045 Lactobacillus fermentum IFO 3956 cation-transport ATPase YP_001843861.1 1216572 R 334390 CDS YP_001843862.1 184155522 6232841 1217236..1218177 1 NC_010610.1 transcriptional regulator 1218177 6232841 LAF_1046 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843862.1 1217236 D 334390 CDS YP_001843863.1 184155523 6232842 1218379..1219899 1 NC_010610.1 gluconate kinase 1219899 6232842 LAF_1047 Lactobacillus fermentum IFO 3956 gluconate kinase YP_001843863.1 1218379 D 334390 CDS YP_001843864.1 184155524 6232843 1219921..1221267 1 NC_010610.1 gluconate transport protein 1221267 6232843 LAF_1048 Lactobacillus fermentum IFO 3956 gluconate transport protein YP_001843864.1 1219921 D 334390 CDS YP_001843865.1 184155525 6232844 1221394..1222398 1 NC_010610.1 transcriptional regulator 1222398 6232844 LAF_1049 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843865.1 1221394 D 334390 CDS YP_001843866.1 184155526 6232845 1222411..1222752 1 NC_010610.1 hypothetical protein 1222752 6232845 LAF_1050 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843866.1 1222411 D 334390 CDS YP_001843867.1 184155527 6232846 complement(1223005..1224192) 1 NC_010610.1 aspartate aminotransferase 1224192 6232846 LAF_1051 Lactobacillus fermentum IFO 3956 aspartate aminotransferase YP_001843867.1 1223005 R 334390 CDS YP_001843868.1 184155528 6232847 complement(1224394..1224927) 1 NC_010610.1 hypothetical protein 1224927 6232847 LAF_1052 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843868.1 1224394 R 334390 CDS YP_001843869.1 184155529 6232848 complement(1225017..1225157) 1 NC_010610.1 hypothetical protein 1225157 6232848 LAF_1053 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843869.1 1225017 R 334390 CDS YP_001843870.1 184155530 6232849 1225228..1226736 1 NC_010610.1 glutamate-cysteine ligase 1226736 6232849 LAF_1054 Lactobacillus fermentum IFO 3956 glutamate-cysteine ligase YP_001843870.1 1225228 D 334390 CDS YP_001843871.1 184155531 6232850 complement(1227619..1228977) 1 NC_010610.1 Na-H antiporter 1228977 6232850 LAF_1055 Lactobacillus fermentum IFO 3956 Na-H antiporter YP_001843871.1 1227619 R 334390 CDS YP_001843872.1 184155532 6232851 complement(1229003..1229224) 1 NC_010610.1 hypothetical protein 1229224 6232851 LAF_1056 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843872.1 1229003 R 334390 CDS YP_001843873.1 184155533 6232852 complement(1229401..1229829) 1 NC_010610.1 hypothetical protein 1229829 6232852 LAF_1057 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843873.1 1229401 R 334390 CDS YP_001843874.1 184155534 6232853 complement(1229839..1230804) 1 NC_010610.1 hypothetical protein 1230804 6232853 LAF_1058 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843874.1 1229839 R 334390 CDS YP_001843875.1 184155535 6232854 complement(1230970..1231659) 1 NC_010610.1 nitrate reductase subunit gamma 1231659 6232854 LAF_1059 Lactobacillus fermentum IFO 3956 nitrate reductase subunit gamma YP_001843875.1 1230970 R 334390 CDS YP_001843876.1 184155536 6232855 complement(1231652..1232230) 1 NC_010610.1 nitrate reductase subunit delta 1232230 6232855 LAF_1060 Lactobacillus fermentum IFO 3956 nitrate reductase subunit delta YP_001843876.1 1231652 R 334390 CDS YP_001843877.1 184155537 6232856 complement(1232223..1233782) 1 NC_010610.1 nitrate reductase subunit beta 1233782 6232856 LAF_1061 Lactobacillus fermentum IFO 3956 nitrate reductase subunit beta YP_001843877.1 1232223 R 334390 CDS YP_001843878.1 184155538 6232857 complement(1233772..1237437) 1 NC_010610.1 nitrate reductase subunit alpha 1237437 6232857 LAF_1062 Lactobacillus fermentum IFO 3956 nitrate reductase subunit alpha YP_001843878.1 1233772 R 334390 CDS YP_001843879.1 184155539 6232858 1237603..1238595 1 NC_010610.1 molybdopterin biosynthesis protein MoeB 1238595 6232858 LAF_1063 Lactobacillus fermentum IFO 3956 molybdopterin biosynthesis protein MoeB YP_001843879.1 1237603 D 334390 CDS YP_001843880.1 184155540 6232859 1238617..1239114 1 NC_010610.1 molybdopterin biosynthesis protein MoaB 1239114 6232859 LAF_1064 Lactobacillus fermentum IFO 3956 molybdopterin biosynthesis protein MoaB YP_001843880.1 1238617 D 334390 CDS YP_001843881.1 184155541 6232860 1239104..1240318 1 NC_010610.1 molybdopterin biosynthesis protein MoeA 1240318 6232860 LAF_1065 Lactobacillus fermentum IFO 3956 molybdopterin biosynthesis protein MoeA YP_001843881.1 1239104 D 334390 CDS YP_001843882.1 184155542 6232861 1240786..1241283 1 NC_010610.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1241283 moaC 6232861 moaC Lactobacillus fermentum IFO 3956 molybdenum cofactor biosynthesis protein MoaC YP_001843882.1 1240786 D 334390 CDS YP_001843883.1 184155543 6231864 1241280..1241825 1 NC_010610.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA 1241825 6231864 LAF_1067 Lactobacillus fermentum IFO 3956 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001843883.1 1241280 D 334390 CDS YP_001843884.1 184155544 6231865 1241825..1242088 1 NC_010610.1 hypothetical protein 1242088 6231865 LAF_1068 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843884.1 1241825 D 334390 CDS YP_001843885.1 184155545 6231866 1242155..1242589 1 NC_010610.1 hypothetical protein 1242589 6231866 LAF_1069 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843885.1 1242155 D 334390 CDS YP_001843886.1 184155546 6231867 1242612..1243679 1 NC_010610.1 two-component sensor histidine kinase 1243679 6231867 LAF_1070 Lactobacillus fermentum IFO 3956 two-component sensor histidine kinase YP_001843886.1 1242612 D 334390 CDS YP_001843887.1 184155547 6231868 1243681..1244334 1 NC_010610.1 two-component response regulator 1244334 6231868 LAF_1071 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001843887.1 1243681 D 334390 CDS YP_001843888.1 184155548 6231869 1244474..1244737 1 NC_010610.1 hypothetical protein 1244737 6231869 LAF_1072 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843888.1 1244474 D 334390 CDS YP_001843889.1 184155549 6231870 1244747..1245730 1 NC_010610.1 hypothetical protein 1245730 6231870 LAF_1073 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843889.1 1244747 D 334390 CDS YP_001843890.1 184155550 6231871 1245727..1246644 1 NC_010610.1 hypothetical protein 1246644 6231871 LAF_1074 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843890.1 1245727 D 334390 CDS YP_001843891.1 184155551 6231872 1246745..1246978 1 NC_010610.1 hypothetical protein 1246978 6231872 LAF_1075 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843891.1 1246745 D 334390 CDS YP_001843892.1 184155552 6231873 complement(1247197..1247913) 1 NC_010610.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1247913 ubiE 6231873 ubiE Lactobacillus fermentum IFO 3956 ubiquinone/menaquinone biosynthesis methyltransferase YP_001843892.1 1247197 R 334390 CDS YP_001843893.1 184155553 6231874 complement(1248002..1248889) 1 NC_010610.1 hypothetical protein 1248889 6231874 LAF_1077 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843893.1 1248002 R 334390 CDS YP_001843894.1 184155554 6231875 complement(1248904..1249242) 1 NC_010610.1 hypothetical protein 1249242 6231875 LAF_1078 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843894.1 1248904 R 334390 CDS YP_001843895.1 184155555 6231876 complement(1249257..1250453) 1 NC_010610.1 nitrite extrusion protein 1250453 6231876 LAF_1079 Lactobacillus fermentum IFO 3956 nitrite extrusion protein YP_001843895.1 1249257 R 334390 CDS YP_001843896.1 184155556 6231877 complement(1250459..1251457) 1 NC_010610.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1251457 moaA 6231877 moaA Lactobacillus fermentum IFO 3956 molybdenum cofactor biosynthesis protein A YP_001843896.1 1250459 R 334390 CDS YP_001843897.1 184155557 6231878 complement(1251467..1251712) 1 NC_010610.1 molybdenum cofactor biosynthesis protein D 1251712 6231878 LAF_1081 Lactobacillus fermentum IFO 3956 molybdenum cofactor biosynthesis protein D YP_001843897.1 1251467 R 334390 CDS YP_001843898.1 184155558 6231879 complement(1251712..1252113) 1 NC_010610.1 molybdenum cofactor biosynthesis protein E 1252113 6231879 LAF_1082 Lactobacillus fermentum IFO 3956 molybdenum cofactor biosynthesis protein E YP_001843898.1 1251712 R 334390 CDS YP_001843899.1 184155559 6231880 1252468..1252866 1 NC_010610.1 hypothetical protein 1252866 6231880 LAF_1083 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843899.1 1252468 D 334390 CDS YP_001843900.1 184155560 6231881 1252853..1253851 1 NC_010610.1 iron ABC transporter permease 1253851 6231881 LAF_1084 Lactobacillus fermentum IFO 3956 iron ABC transporter permease YP_001843900.1 1252853 D 334390 CDS YP_001843901.1 184155561 6231882 1253848..1254618 1 NC_010610.1 iron ABC transporter ATP-binding protein 1254618 6231882 LAF_1085 Lactobacillus fermentum IFO 3956 iron ABC transporter ATP-binding protein YP_001843901.1 1253848 D 334390 CDS YP_001843902.1 184155562 6231883 1254885..1256108 1 NC_010610.1 NADH dehydrogenase 1256108 6231883 LAF_1086 Lactobacillus fermentum IFO 3956 NADH dehydrogenase YP_001843902.1 1254885 D 334390 CDS YP_001843903.1 184155563 6231884 1256350..1256682 1 NC_010610.1 hypothetical protein 1256682 6231884 LAF_1087 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843903.1 1256350 D 334390 CDS YP_001843904.1 184155564 6231885 1256908..1258239 1 NC_010610.1 hypothetical protein 1258239 6231885 LAF_1088 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843904.1 1256908 D 334390 CDS YP_001843905.1 184155565 6231886 1258176..1259150 1 NC_010610.1 hypothetical protein 1259150 6231886 LAF_1089 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843905.1 1258176 D 334390 CDS YP_001843906.1 184155566 6231887 complement(1259205..1260203) 1 NC_010610.1 transposase 1260203 6231887 LAF_1090 Lactobacillus fermentum IFO 3956 transposase YP_001843906.1 1259205 R 334390 CDS YP_001843907.1 184155567 6231888 complement(1260370..1261434) 1 NC_010610.1 iron ABC transporter substrate-binding protein 1261434 6231888 LAF_1091 Lactobacillus fermentum IFO 3956 iron ABC transporter substrate-binding protein YP_001843907.1 1260370 R 334390 CDS YP_001843908.1 184155568 6231889 complement(1261596..1263002) 1 NC_010610.1 hypothetical protein 1263002 6231889 LAF_1092 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843908.1 1261596 R 334390 CDS YP_001843909.1 184155569 6231890 complement(1262989..1263459) 1 NC_010610.1 nitrogen fixation protein 1263459 6231890 LAF_1093 Lactobacillus fermentum IFO 3956 nitrogen fixation protein YP_001843909.1 1262989 R 334390 CDS YP_001843910.1 184155570 6231891 complement(1263446..1264684) 1 NC_010610.1 aminotransferase 1264684 6231891 LAF_1094 Lactobacillus fermentum IFO 3956 aminotransferase YP_001843910.1 1263446 R 334390 CDS YP_001843911.1 184155571 6231892 complement(1264668..1265963) 1 NC_010610.1 hypothetical protein 1265963 6231892 LAF_1095 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843911.1 1264668 R 334390 CDS YP_001843912.1 184155572 6231893 complement(1265975..1266772) 1 NC_010610.1 ABC transporter ATP-binding protein 1266772 6231893 LAF_1096 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001843912.1 1265975 R 334390 CDS YP_001843913.1 184155573 6231894 1267004..1267216 1 NC_010610.1 hypothetical protein 1267216 6231894 LAF_1097 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843913.1 1267004 D 334390 CDS YP_001843914.1 184155574 6231895 1267213..1269204 1 NC_010610.1 ferrous iron transport protein B 1269204 6231895 LAF_1098 Lactobacillus fermentum IFO 3956 ferrous iron transport protein B YP_001843914.1 1267213 D 334390 CDS YP_001843915.1 184155575 6231896 1269218..1269388 1 NC_010610.1 hypothetical protein 1269388 6231896 LAF_1099 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843915.1 1269218 D 334390 CDS YP_001843916.1 184155576 6231897 complement(1269456..1270355) 1 NC_010610.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1270355 6231897 LAF_1100 Lactobacillus fermentum IFO 3956 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_001843916.1 1269456 R 334390 CDS YP_001843917.1 184155577 6231898 1270437..1271423 1 NC_010610.1 polyprenyl synthase 1271423 6231898 LAF_1101 Lactobacillus fermentum IFO 3956 polyprenyl synthase YP_001843917.1 1270437 D 334390 CDS YP_001843918.1 184155578 6231899 complement(1271464..1272447) 1 NC_010610.1 D-2-hydroxyisocaproate dehydrogenase 1272447 6231899 LAF_1102 Lactobacillus fermentum IFO 3956 D-2-hydroxyisocaproate dehydrogenase YP_001843918.1 1271464 R 334390 CDS YP_001843919.1 184155579 6231900 complement(1272449..1273609) 1 NC_010610.1 aspartate aminotransferase 1273609 6231900 LAF_1103 Lactobacillus fermentum IFO 3956 aspartate aminotransferase YP_001843919.1 1272449 R 334390 CDS YP_001843920.1 184155580 6231901 complement(1273790..1274311) 1 NC_010610.1 shikimate kinase 1274311 6231901 LAF_1104 Lactobacillus fermentum IFO 3956 shikimate kinase YP_001843920.1 1273790 R 334390 CDS YP_001843921.1 184155581 6231902 complement(1274308..1275393) 1 NC_010610.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1275393 6231902 LAF_1105 Lactobacillus fermentum IFO 3956 prephenate dehydrogenase YP_001843921.1 1274308 R 334390 CDS YP_001843922.1 184155582 6231903 complement(1275394..1276692) 1 NC_010610.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1276692 6231903 LAF_1106 Lactobacillus fermentum IFO 3956 3-phosphoshikimate 1-carboxyvinyltransferase YP_001843922.1 1275394 R 334390 CDS YP_001843923.1 184155583 6231904 complement(1276667..1277212) 1 NC_010610.1 hypothetical protein 1277212 6231904 LAF_1107 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843923.1 1276667 R 334390 CDS YP_001843924.1 184155584 6231905 complement(1277214..1278380) 1 NC_010610.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1278380 6231905 LAF_1108 Lactobacillus fermentum IFO 3956 chorismate synthase YP_001843924.1 1277214 R 334390 CDS YP_001843925.1 184155585 6231906 complement(1278636..1279832) 1 NC_010610.1 transport protein 1279832 6231906 LAF_1109 Lactobacillus fermentum IFO 3956 transport protein YP_001843925.1 1278636 R 334390 CDS YP_001843926.1 184155586 6231907 complement(1280377..1281840) 1 NC_010610.1 dipeptide/tripeptide transport protein 1281840 6231907 LAF_1110 Lactobacillus fermentum IFO 3956 dipeptide/tripeptide transport protein YP_001843926.1 1280377 R 334390 CDS YP_001843927.1 184155587 6233554 1282176..1282991 1 NC_010610.1 hypothetical protein 1282991 6233554 LAF_1111 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843927.1 1282176 D 334390 CDS YP_001843928.1 184155588 6231909 1283045..1283908 1 NC_010610.1 hypothetical protein 1283908 6231909 LAF_1112 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843928.1 1283045 D 334390 CDS YP_001843929.1 184155589 6231910 complement(1284007..1284861) 1 NC_010610.1 hypothetical protein 1284861 6231910 LAF_1113 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843929.1 1284007 R 334390 CDS YP_001843930.1 184155590 6231911 1285194..1286576 1 NC_010610.1 multidrug transport protein 1286576 6231911 LAF_1114 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001843930.1 1285194 D 334390 CDS YP_001843931.1 184155591 6231912 1286643..1286879 1 NC_010610.1 hypothetical protein 1286879 6231912 LAF_1115 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843931.1 1286643 D 334390 CDS YP_001843932.1 184155592 6231913 complement(1287064..1289964) 1 NC_010610.1 hypothetical protein 1289964 6231913 LAF_1116 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843932.1 1287064 R 334390 CDS YP_001843933.1 184155593 6231914 complement(1290095..1290370) 1 NC_010610.1 hypothetical protein 1290370 6231914 LAF_1117 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843933.1 1290095 R 334390 CDS YP_001843934.1 184155594 6231915 complement(1290367..1290687) 1 NC_010610.1 hypothetical protein 1290687 6231915 LAF_1118 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843934.1 1290367 R 334390 CDS YP_001843935.1 184155595 6231916 1290857..1292866 1 NC_010610.1 potassium transport protein 1292866 6231916 LAF_1119 Lactobacillus fermentum IFO 3956 potassium transport protein YP_001843935.1 1290857 D 334390 CDS YP_001843936.1 184155596 6231917 complement(1293085..1293531) 1 NC_010610.1 hypothetical protein 1293531 6231917 LAF_1120 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843936.1 1293085 R 334390 CDS YP_001843937.1 184155597 6231918 complement(1293528..1295039) 1 NC_010610.1 glycerol kinase 1295039 6231918 LAF_1121 Lactobacillus fermentum IFO 3956 glycerol kinase YP_001843937.1 1293528 R 334390 CDS YP_001843938.1 184155598 6231919 complement(1295107..1295292) 1 NC_010610.1 4-oxalocrotonate tautomerase 1295292 6231919 LAF_1122 Lactobacillus fermentum IFO 3956 4-oxalocrotonate tautomerase YP_001843938.1 1295107 R 334390 CDS YP_001843939.1 184155599 6231920 complement(1295357..1297207) 1 NC_010610.1 Na-H antiporter 1297207 6231920 LAF_1123 Lactobacillus fermentum IFO 3956 Na-H antiporter YP_001843939.1 1295357 R 334390 CDS YP_001843940.1 184155600 6231921 complement(1297337..1298749) 1 NC_010610.1 dipeptidase 1298749 6231921 LAF_1124 Lactobacillus fermentum IFO 3956 dipeptidase YP_001843940.1 1297337 R 334390 CDS YP_001843941.1 184155601 6231922 complement(1298770..1299669) 1 NC_010610.1 hypothetical protein 1299669 6231922 LAF_1125 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843941.1 1298770 R 334390 CDS YP_001843942.1 184155602 6231923 complement(1299662..1300972) 1 NC_010610.1 PTS system cellobiose-specific IIC component 1300972 6231923 LAF_1126 Lactobacillus fermentum IFO 3956 PTS system cellobiose-specific IIC component YP_001843942.1 1299662 R 334390 CDS YP_001843943.1 184155603 6231924 complement(1301141..1301410) 1 NC_010610.1 30S ribosomal protein S14 1301410 6231924 LAF_1127 Lactobacillus fermentum IFO 3956 30S ribosomal protein S14 YP_001843943.1 1301141 R 334390 CDS YP_001843944.1 184155604 6231925 complement(1301513..1302385) 1 NC_010610.1 hypothetical protein 1302385 6231925 LAF_1128 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843944.1 1301513 R 334390 CDS YP_001843945.1 184155605 6231926 1304056..1305282 1 NC_010610.1 multidrug transport protein 1305282 6231926 LAF_1129 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001843945.1 1304056 D 334390 CDS YP_001843946.1 184155606 6231927 1305446..1306834 1 NC_010610.1 hypothetical protein 1306834 6231927 LAF_1130 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843946.1 1305446 D 334390 CDS YP_001843947.1 184155607 6231928 1307021..1308247 1 NC_010610.1 hypothetical protein 1308247 6231928 LAF_1131 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843947.1 1307021 D 334390 CDS YP_001843948.1 184155608 6231929 complement(1308454..1308666) 1 NC_010610.1 hypothetical protein 1308666 6231929 LAF_1132 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843948.1 1308454 R 334390 CDS YP_001843949.1 184155609 6231930 complement(1308639..1308974) 1 NC_010610.1 hypothetical protein 1308974 6231930 LAF_1133 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843949.1 1308639 R 334390 CDS YP_001843950.1 184155610 6231931 complement(1308996..1309154) 1 NC_010610.1 hypothetical protein 1309154 6231931 LAF_1134 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843950.1 1308996 R 334390 CDS YP_001843951.1 184155611 6231932 complement(1309282..1310403) 1 NC_010610.1 hypothetical protein 1310403 6231932 LAF_1135 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843951.1 1309282 R 334390 CDS YP_001843952.1 184155612 6231933 complement(1310458..1311477) 1 NC_010610.1 lipoate-protein ligase 1311477 6231933 LAF_1136 Lactobacillus fermentum IFO 3956 lipoate-protein ligase YP_001843952.1 1310458 R 334390 CDS YP_001843953.1 184155613 6231934 complement(1311506..1312912) 1 NC_010610.1 dihydrolipoamide dehydrogenase 1312912 6231934 LAF_1137 Lactobacillus fermentum IFO 3956 dihydrolipoamide dehydrogenase YP_001843953.1 1311506 R 334390 CDS YP_001843954.1 184155614 6231935 complement(1312919..1314208) 1 NC_010610.1 pyruvate dehydrogenase complex E2 component 1314208 6231935 LAF_1138 Lactobacillus fermentum IFO 3956 pyruvate dehydrogenase complex E2 component YP_001843954.1 1312919 R 334390 CDS YP_001843955.1 184155615 6231936 complement(1314224..1315201) 1 NC_010610.1 pyruvate dehydrogenase complex E1 component subunit beta 1315201 6231936 LAF_1139 Lactobacillus fermentum IFO 3956 pyruvate dehydrogenase complex E1 component subunit beta YP_001843955.1 1314224 R 334390 CDS YP_001843956.1 184155616 6231937 complement(1315204..1316175) 1 NC_010610.1 pyruvate dehydrogenase complex E1 component subunit alpha 1316175 6231937 LAF_1140 Lactobacillus fermentum IFO 3956 pyruvate dehydrogenase complex E1 component subunit alpha YP_001843956.1 1315204 R 334390 CDS YP_001843957.1 184155617 6231938 1316646..1316966 1 NC_010610.1 hypothetical protein 1316966 6231938 LAF_1141 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843957.1 1316646 D 334390 CDS YP_001843958.1 184155618 6231939 complement(1317248..1317574) 1 NC_010610.1 hypothetical protein 1317574 6231939 LAF_1142 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843958.1 1317248 R 334390 CDS YP_001843959.1 184155619 6232736 complement(1317571..1318296) 1 NC_010610.1 hypothetical protein 1318296 6232736 LAF_1143 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843959.1 1317571 R 334390 CDS YP_001843960.1 184155620 6232199 complement(1318280..1319788) 1 NC_010610.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1319788 6232199 LAF_1144 Lactobacillus fermentum IFO 3956 threonine synthase YP_001843960.1 1318280 R 334390 CDS YP_001843961.1 184155621 6232200 1319903..1321180 1 NC_010610.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1321180 6232200 LAF_1145 Lactobacillus fermentum IFO 3956 homoserine dehydrogenase YP_001843961.1 1319903 D 334390 CDS YP_001843962.1 184155622 6232201 1321190..1322050 1 NC_010610.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1322050 6232201 LAF_1146 Lactobacillus fermentum IFO 3956 homoserine kinase YP_001843962.1 1321190 D 334390 CDS YP_001843963.1 184155623 6232202 complement(1322347..1322871) 1 NC_010610.1 acetyltransferase 1322871 6232202 LAF_1147 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001843963.1 1322347 R 334390 CDS YP_001843964.1 184155624 6232203 complement(1322972..1323613) 1 NC_010610.1 hypothetical protein 1323613 6232203 LAF_1148 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843964.1 1322972 R 334390 CDS YP_001843965.1 184155625 6232204 1323736..1324392 1 NC_010610.1 hypothetical protein 1324392 6232204 LAF_1149 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843965.1 1323736 D 334390 CDS YP_001843966.1 184155626 6232205 complement(1324389..1325132) 1 NC_010610.1 hypothetical protein 1325132 6232205 LAF_1150 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843966.1 1324389 R 334390 CDS YP_001843967.1 184155627 6232206 complement(1325406..1326017) 1 NC_010610.1 hypothetical protein 1326017 6232206 LAF_1151 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843967.1 1325406 R 334390 CDS YP_001843968.1 184155628 6232207 complement(1326014..1326892) 1 NC_010610.1 hypothetical protein 1326892 6232207 LAF_1152 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843968.1 1326014 R 334390 CDS YP_001843969.1 184155629 6232208 1327083..1328774 1 NC_010610.1 adherence protein 1328774 6232208 LAF_1153 Lactobacillus fermentum IFO 3956 adherence protein YP_001843969.1 1327083 D 334390 CDS YP_001843970.1 184155630 6232209 1329904..1331124 1 NC_010610.1 transposase 1331124 6232209 LAF_1154 Lactobacillus fermentum IFO 3956 transposase YP_001843970.1 1329904 D 334390 CDS YP_001843971.1 184155631 6232210 complement(1331313..1331729) 1 NC_010610.1 arsenate reductase 1331729 6232210 LAF_1155 Lactobacillus fermentum IFO 3956 arsenate reductase YP_001843971.1 1331313 R 334390 CDS YP_001843972.1 184155632 6232211 complement(1331741..1332778) 1 NC_010610.1 hypothetical protein 1332778 6232211 LAF_1156 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843972.1 1331741 R 334390 CDS YP_001843973.1 184155633 6232212 complement(1332829..1333146) 1 NC_010610.1 arsenical resistance operon repressor 1333146 6232212 LAF_1157 Lactobacillus fermentum IFO 3956 arsenical resistance operon repressor YP_001843973.1 1332829 R 334390 CDS YP_001843974.1 184155634 6232213 1333636..1334775 1 NC_010610.1 transposase 1334775 6232213 LAF_1158 Lactobacillus fermentum IFO 3956 transposase YP_001843974.1 1333636 D 334390 CDS YP_001843975.1 184155635 6232214 1335421..1336338 1 NC_010610.1 transcriptional regulator 1336338 6232214 LAF_1159 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001843975.1 1335421 D 334390 CDS YP_001843976.1 184155636 6232215 1336456..1337091 1 NC_010610.1 carbonic anhydrase 1337091 6232215 LAF_1160 Lactobacillus fermentum IFO 3956 carbonic anhydrase YP_001843976.1 1336456 D 334390 CDS YP_001843977.1 184155637 6232216 complement(1337284..1339788) 1 NC_010610.1 carbamoyl-phosphate synthase large subunit 1339788 6232216 LAF_1161 Lactobacillus fermentum IFO 3956 carbamoyl-phosphate synthase large subunit YP_001843977.1 1337284 R 334390 CDS YP_001843978.1 184155638 6232217 complement(1339790..1340872) 1 NC_010610.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1340872 6232217 LAF_1162 Lactobacillus fermentum IFO 3956 carbamoyl phosphate synthase small subunit YP_001843978.1 1339790 R 334390 CDS YP_001843979.1 184155639 6232218 complement(1340902..1341816) 1 NC_010610.1 pseudouridine synthase 1341816 6232218 LAF_1163 Lactobacillus fermentum IFO 3956 pseudouridine synthase YP_001843979.1 1340902 R 334390 CDS YP_001843980.1 184155640 6232219 complement(1341818..1342255) 1 NC_010610.1 signal peptidase 1342255 6232219 LAF_1164 Lactobacillus fermentum IFO 3956 signal peptidase YP_001843980.1 1341818 R 334390 CDS YP_001843981.1 184155641 6232220 complement(1342255..1342689) 1 NC_010610.1 hypothetical protein 1342689 6232220 LAF_1165 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843981.1 1342255 R 334390 CDS YP_001843982.1 184155642 6232221 1342702..1343103 1 NC_010610.1 hypothetical protein 1343103 6232221 LAF_1166 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843982.1 1342702 D 334390 CDS YP_001843983.1 184155643 6232222 complement(1343259..1343861) 1 NC_010610.1 hypothetical protein 1343861 6232222 LAF_1167 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843983.1 1343259 R 334390 CDS YP_001843984.1 184155644 6232223 complement(1344085..1344948) 1 NC_010610.1 amino acid ABC transporter substrate-binding protein 1344948 6232223 LAF_1168 Lactobacillus fermentum IFO 3956 amino acid ABC transporter substrate-binding protein YP_001843984.1 1344085 R 334390 CDS YP_001843985.1 184155645 6232224 complement(1345162..1345851) 1 NC_010610.1 amino acid ABC transporter permease 1345851 6232224 LAF_1169 Lactobacillus fermentum IFO 3956 amino acid ABC transporter permease YP_001843985.1 1345162 R 334390 CDS YP_001843986.1 184155646 6232225 1346743..1347045 1 NC_010610.1 hypothetical protein 1347045 6232225 LAF_1170 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843986.1 1346743 D 334390 CDS YP_001843987.1 184155647 6232226 complement(1347116..1348336) 1 NC_010610.1 transposase 1348336 6232226 LAF_1171 Lactobacillus fermentum IFO 3956 transposase YP_001843987.1 1347116 R 334390 CDS YP_001843988.1 184155648 6232227 1348408..1349286 1 NC_010610.1 transposase 1349286 6232227 LAF_1172 Lactobacillus fermentum IFO 3956 transposase YP_001843988.1 1348408 D 334390 CDS YP_001843989.1 184155649 6232228 complement(1349272..1350165) 1 NC_010610.1 hypothetical protein 1350165 6232228 LAF_1173 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843989.1 1349272 R 334390 CDS YP_001843990.1 184155650 6232229 1351648..1352496 1 NC_010610.1 hypothetical protein 1352496 6232229 LAF_1174 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843990.1 1351648 D 334390 CDS YP_001843991.1 184155651 6232230 1352628..1354106 1 NC_010610.1 amidase 1354106 6232230 LAF_1175 Lactobacillus fermentum IFO 3956 amidase YP_001843991.1 1352628 D 334390 CDS YP_001843992.1 184155652 6232231 1354257..1354991 1 NC_010610.1 hypothetical protein 1354991 6232231 LAF_1176 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843992.1 1354257 D 334390 CDS YP_001843993.1 184155653 6232232 complement(1355319..1356452) 1 NC_010610.1 hypothetical protein 1356452 6232232 LAF_1177 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843993.1 1355319 R 334390 CDS YP_001843994.1 184155654 6232233 complement(1356495..1356944) 1 NC_010610.1 NTP pyrophosphohydrolase 1356944 6232233 LAF_1178 Lactobacillus fermentum IFO 3956 NTP pyrophosphohydrolase YP_001843994.1 1356495 R 334390 CDS YP_001843995.1 184155655 6232234 complement(1356948..1358129) 1 NC_010610.1 hypothetical protein 1358129 6232234 LAF_1179 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843995.1 1356948 R 334390 CDS YP_001843996.1 184155656 6232235 complement(1358237..1360171) 1 NC_010610.1 elongation factor G 1360171 6232235 LAF_1180 Lactobacillus fermentum IFO 3956 elongation factor G YP_001843996.1 1358237 R 334390 CDS YP_001843997.1 184155657 6232236 complement(1360705..1361073) 1 NC_010610.1 GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 1361073 6232236 LAF_1181 Lactobacillus fermentum IFO 3956 cell division protein GpsB YP_001843997.1 1360705 R 334390 CDS YP_001843998.1 184155658 6232237 complement(1361172..1361768) 1 NC_010610.1 hypothetical protein 1361768 6232237 LAF_1182 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001843998.1 1361172 R 334390 CDS YP_001843999.1 184155659 6232238 1361860..1362495 1 NC_010610.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1362495 recU 6232238 recU Lactobacillus fermentum IFO 3956 Holliday junction-specific endonuclease YP_001843999.1 1361860 D 334390 CDS YP_001844000.1 184155660 6232239 1362488..1364752 1 NC_010610.1 penicillin binding protein 1A 1364752 6232239 LAF_1184 Lactobacillus fermentum IFO 3956 penicillin binding protein 1A YP_001844000.1 1362488 D 334390 CDS YP_001844001.1 184155661 6232240 complement(1364867..1365778) 1 NC_010610.1 transport protein 1365778 6232240 LAF_1185 Lactobacillus fermentum IFO 3956 transport protein YP_001844001.1 1364867 R 334390 CDS YP_001844002.1 184155662 6232241 1365901..1366920 1 NC_010610.1 oxidoreductase 1366920 6232241 LAF_1186 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001844002.1 1365901 D 334390 CDS YP_001844003.1 184155663 6232242 complement(1367237..1368241) 1 NC_010610.1 hypothetical protein 1368241 6232242 LAF_1187 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844003.1 1367237 R 334390 CDS YP_001844004.1 184155664 6232243 complement(1368340..1369068) 1 NC_010610.1 DNA replication protein DnaD 1369068 6232243 LAF_1188 Lactobacillus fermentum IFO 3956 DNA replication protein DnaD YP_001844004.1 1368340 R 334390 CDS YP_001844005.1 184155665 6232244 complement(1369160..1370455) 1 NC_010610.1 asparaginyl-tRNA synthase 1370455 6232244 LAF_1189 Lactobacillus fermentum IFO 3956 asparaginyl-tRNA synthase YP_001844005.1 1369160 R 334390 CDS YP_001844006.1 184155666 6232245 complement(1370482..1371000) 1 NC_010610.1 hypothetical protein 1371000 6232245 LAF_1190 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844006.1 1370482 R 334390 CDS YP_001844007.1 184155667 6232246 complement(1371051..1373882) 1 NC_010610.1 helicase 1373882 6232246 LAF_1191 Lactobacillus fermentum IFO 3956 helicase YP_001844007.1 1371051 R 334390 CDS YP_001844008.1 184155668 6232247 1374121..1375056 1 NC_010610.1 mevalonate kinase 1375056 6232247 LAF_1192 Lactobacillus fermentum IFO 3956 mevalonate kinase YP_001844008.1 1374121 D 334390 CDS YP_001844009.1 184155669 6232248 1375058..1376047 1 NC_010610.1 mevalonate diphosphate decarboxylase 1376047 6232248 LAF_1193 Lactobacillus fermentum IFO 3956 mevalonate diphosphate decarboxylase YP_001844009.1 1375058 D 334390 CDS YP_001844010.1 184155670 6232249 1376067..1377176 1 NC_010610.1 phosphomevalonate kinase 1377176 6232249 LAF_1194 Lactobacillus fermentum IFO 3956 phosphomevalonate kinase YP_001844010.1 1376067 D 334390 CDS YP_001844011.1 184155671 6232250 1377232..1378317 1 NC_010610.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1378317 6232250 LAF_1195 Lactobacillus fermentum IFO 3956 isopentenyl pyrophosphate isomerase YP_001844011.1 1377232 D 334390 CDS YP_001844012.1 184155672 6232251 complement(1378474..1379607) 1 NC_010610.1 phosphate ABC transporter ATP-binding protein 1379607 6232251 LAF_1196 Lactobacillus fermentum IFO 3956 phosphate ABC transporter ATP-binding protein YP_001844012.1 1378474 R 334390 CDS YP_001844013.1 184155673 6232252 complement(1379817..1381004) 1 NC_010610.1 transposase 1381004 6232252 LAF_1197 Lactobacillus fermentum IFO 3956 transposase YP_001844013.1 1379817 R 334390 CDS YP_001844014.1 184155674 6232253 1381027..1381545 1 NC_010610.1 transposase 1381545 6232253 LAF_1198 Lactobacillus fermentum IFO 3956 transposase YP_001844014.1 1381027 D 334390 CDS YP_001844015.1 184155675 6232254 complement(1381596..1382969) 1 NC_010610.1 RNA methylase 1382969 6232254 LAF_1199 Lactobacillus fermentum IFO 3956 RNA methylase YP_001844015.1 1381596 R 334390 CDS YP_001844016.1 184155676 6232255 1383098..1383904 1 NC_010610.1 hydrolase 1383904 6232255 LAF_1200 Lactobacillus fermentum IFO 3956 hydrolase YP_001844016.1 1383098 D 334390 CDS YP_001844017.1 184155677 6232256 complement(1384136..1385053) 1 NC_010610.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1385053 6232256 LAF_1201 Lactobacillus fermentum IFO 3956 dihydroorotate dehydrogenase 1B YP_001844017.1 1384136 R 334390 CDS YP_001844018.1 184155678 6232257 complement(1385066..1388245) 1 NC_010610.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1388245 carB 6232257 carB Lactobacillus fermentum IFO 3956 carbamoyl phosphate synthase large subunit YP_001844018.1 1385066 R 334390 CDS YP_001844019.1 184155679 6232258 complement(1388245..1389327) 1 NC_010610.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1389327 6232258 LAF_1203 Lactobacillus fermentum IFO 3956 carbamoyl phosphate synthase small subunit YP_001844019.1 1388245 R 334390 CDS YP_001844020.1 184155680 6232259 complement(1389329..1390618) 1 NC_010610.1 dihydroorotase 1390618 6232259 LAF_1204 Lactobacillus fermentum IFO 3956 dihydroorotase YP_001844020.1 1389329 R 334390 CDS YP_001844021.1 184155681 6232260 complement(1390618..1391583) 1 NC_010610.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1391583 pyrB 6232260 pyrB Lactobacillus fermentum IFO 3956 aspartate carbamoyltransferase catalytic subunit YP_001844021.1 1390618 R 334390 CDS YP_001844022.1 184155682 6232261 1392253..1392555 1 NC_010610.1 hypothetical protein 1392555 6232261 LAF_1206 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844022.1 1392253 D 334390 CDS YP_001844023.1 184155683 6232262 1392579..1393457 1 NC_010610.1 transposase 1393457 6232262 LAF_1207 Lactobacillus fermentum IFO 3956 transposase YP_001844023.1 1392579 D 334390 CDS YP_001844024.1 184155684 6232263 complement(1393892..1394182) 1 NC_010610.1 hypothetical protein 1394182 6232263 LAF_1208 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844024.1 1393892 R 334390 CDS YP_001844025.1 184155685 6232264 complement(1394192..1395223) 1 NC_010610.1 hypothetical protein 1395223 6232264 LAF_1209 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844025.1 1394192 R 334390 CDS YP_001844026.1 184155686 6232265 complement(1395220..1395876) 1 NC_010610.1 hypothetical protein 1395876 6232265 LAF_1210 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844026.1 1395220 R 334390 CDS YP_001844027.1 184155687 6232737 complement(1395880..1396758) 1 NC_010610.1 hypothetical protein 1396758 6232737 LAF_1211 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844027.1 1395880 R 334390 CDS YP_001844028.1 184155688 6232738 complement(1396780..1398681) 1 NC_010610.1 hypothetical protein 1398681 6232738 LAF_1212 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844028.1 1396780 R 334390 CDS YP_001844029.1 184155689 6232081 complement(1398678..1399418) 1 NC_010610.1 hypothetical protein 1399418 6232081 LAF_1213 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844029.1 1398678 R 334390 CDS YP_001844030.1 184155690 6232082 complement(1399484..1400704) 1 NC_010610.1 transposase 1400704 6232082 LAF_1214 Lactobacillus fermentum IFO 3956 transposase YP_001844030.1 1399484 R 334390 CDS YP_001844031.1 184155691 6232083 complement(1400770..1403208) 1 NC_010610.1 hypothetical protein 1403208 6232083 LAF_1215 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844031.1 1400770 R 334390 CDS YP_001844032.1 184155692 6232084 complement(1403441..1404319) 1 NC_010610.1 transposase 1404319 6232084 LAF_1216 Lactobacillus fermentum IFO 3956 transposase YP_001844032.1 1403441 R 334390 CDS YP_001844033.1 184155693 6232085 complement(1404343..1404645) 1 NC_010610.1 hypothetical protein 1404645 6232085 LAF_1217 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844033.1 1404343 R 334390 CDS YP_001844034.1 184155694 6232086 1406212..1407498 1 NC_010610.1 transposase 1407498 6232086 LAF_1218 Lactobacillus fermentum IFO 3956 transposase YP_001844034.1 1406212 D 334390 CDS YP_001844035.1 184155695 6232087 complement(1407591..1407950) 1 NC_010610.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1407950 rplS 6232087 rplS Lactobacillus fermentum IFO 3956 50S ribosomal protein L19 YP_001844035.1 1407591 R 334390 CDS YP_001844036.1 184155696 6232088 complement(1408071..1409498) 1 NC_010610.1 amino acid transporter 1409498 6232088 LAF_1220 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844036.1 1408071 R 334390 CDS YP_001844037.1 184155697 6232089 complement(1409509..1410267) 1 NC_010610.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1410267 trmD 6232089 trmD Lactobacillus fermentum IFO 3956 tRNA (guanine-N(1)-)-methyltransferase YP_001844037.1 1409509 R 334390 CDS YP_001844038.1 184155698 6232090 complement(1410267..1410776) 1 NC_010610.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1410776 rimM 6232090 rimM Lactobacillus fermentum IFO 3956 16S rRNA-processing protein RimM YP_001844038.1 1410267 R 334390 CDS YP_001844039.1 184155699 6232091 complement(1410901..1411161) 1 NC_010610.1 hypothetical protein 1411161 6232091 LAF_1223 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844039.1 1410901 R 334390 CDS YP_001844040.1 184155700 6232092 complement(1411176..1411451) 1 NC_010610.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1411451 rpsP 6232092 rpsP Lactobacillus fermentum IFO 3956 30S ribosomal protein S16 YP_001844040.1 1411176 R 334390 CDS YP_001844041.1 184155701 6232093 complement(1411581..1412285) 1 NC_010610.1 phosphate uptake regulator 1412285 6232093 LAF_1225 Lactobacillus fermentum IFO 3956 phosphate uptake regulator YP_001844041.1 1411581 R 334390 CDS YP_001844042.1 184155702 6232094 complement(1412300..1413055) 1 NC_010610.1 phosphate ABC transporter ATP-binding protein 1413055 6232094 LAF_1226 Lactobacillus fermentum IFO 3956 phosphate ABC transporter ATP-binding protein YP_001844042.1 1412300 R 334390 CDS YP_001844043.1 184155703 6232095 complement(1413068..1413949) 1 NC_010610.1 phosphate ABC transporter permease 1413949 6232095 LAF_1227 Lactobacillus fermentum IFO 3956 phosphate ABC transporter permease YP_001844043.1 1413068 R 334390 CDS YP_001844044.1 184155704 6232096 complement(1413951..1414850) 1 NC_010610.1 phosphate ABC transporter permease 1414850 6232096 LAF_1228 Lactobacillus fermentum IFO 3956 phosphate ABC transporter permease YP_001844044.1 1413951 R 334390 CDS YP_001844045.1 184155705 6232097 complement(1414850..1415731) 1 NC_010610.1 phosphate ABC transporter substrate-binding protein 1415731 6232097 LAF_1229 Lactobacillus fermentum IFO 3956 phosphate ABC transporter substrate-binding protein YP_001844045.1 1414850 R 334390 CDS YP_001844046.1 184155706 6232098 1416018..1416722 1 NC_010610.1 two-component response regulator 1416722 6232098 LAF_1230 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001844046.1 1416018 D 334390 CDS YP_001844047.1 184155707 6232099 complement(1416763..1417560) 1 NC_010610.1 hypothetical protein 1417560 6232099 LAF_1231 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844047.1 1416763 R 334390 CDS YP_001844048.1 184155708 6232100 complement(1417616..1417771) 1 NC_010610.1 hypothetical protein 1417771 6232100 LAF_1232 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844048.1 1417616 R 334390 CDS YP_001844049.1 184155709 6232101 complement(1417833..1418018) 1 NC_010610.1 hypothetical protein 1418018 6232101 LAF_1233 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844049.1 1417833 R 334390 CDS YP_001844050.1 184155710 6232102 complement(1418229..1419683) 1 NC_010610.1 signal recognition particle protein 1419683 6232102 LAF_1234 Lactobacillus fermentum IFO 3956 signal recognition particle protein YP_001844050.1 1418229 R 334390 CDS YP_001844051.1 184155711 6232103 complement(1419846..1420187) 1 NC_010610.1 DNA-binding protein 1420187 6232103 LAF_1235 Lactobacillus fermentum IFO 3956 DNA-binding protein YP_001844051.1 1419846 R 334390 CDS YP_001844052.1 184155712 6232104 complement(1420204..1421733) 1 NC_010610.1 signal recognition particle receptor 1421733 6232104 LAF_1236 Lactobacillus fermentum IFO 3956 signal recognition particle receptor YP_001844052.1 1420204 R 334390 CDS YP_001844053.1 184155713 6232105 complement(1421749..1425312) 1 NC_010610.1 chromosome segregation protein 1425312 6232105 LAF_1237 Lactobacillus fermentum IFO 3956 chromosome segregation protein YP_001844053.1 1421749 R 334390 CDS YP_001844054.1 184155714 6232106 complement(1425326..1426024) 1 NC_010610.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1426024 rnc 6232106 rnc Lactobacillus fermentum IFO 3956 ribonuclease III YP_001844054.1 1425326 R 334390 CDS YP_001844055.1 184155715 6232107 complement(1426171..1426416) 1 NC_010610.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1426416 acpP 6232107 acpP Lactobacillus fermentum IFO 3956 acyl carrier protein YP_001844055.1 1426171 R 334390 CDS YP_001844056.1 184155716 6232108 complement(1426459..1427496) 1 NC_010610.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1427496 6232108 LAF_1240 Lactobacillus fermentum IFO 3956 glycerol-3-phosphate acyltransferase PlsX YP_001844056.1 1426459 R 334390 CDS YP_001844057.1 184155717 6232109 complement(1427509..1429545) 1 NC_010610.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1429545 6232109 LAF_1241 Lactobacillus fermentum IFO 3956 ATP-dependent DNA helicase RecG YP_001844057.1 1427509 R 334390 CDS YP_001844058.1 184155718 6232110 complement(1429610..1431304) 1 NC_010610.1 hypothetical protein 1431304 6232110 LAF_1242 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844058.1 1429610 R 334390 CDS YP_001844059.1 184155719 6232111 complement(1431332..1431694) 1 NC_010610.1 hypothetical protein 1431694 6232111 LAF_1243 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844059.1 1431332 R 334390 CDS YP_001844060.1 184155720 6232112 complement(1431841..1432029) 1 NC_010610.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1432029 rpmB 6232112 rpmB Lactobacillus fermentum IFO 3956 50S ribosomal protein L28 YP_001844060.1 1431841 R 334390 CDS YP_001844061.1 184155721 6232113 complement(1432150..1432809) 1 NC_010610.1 hypothetical protein 1432809 6232113 LAF_1245 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844061.1 1432150 R 334390 CDS YP_001844062.1 184155722 6232114 complement(1432877..1433530) 1 NC_010610.1 ribulose-phosphate 3-epimerase 1433530 6232114 LAF_1246 Lactobacillus fermentum IFO 3956 ribulose-phosphate 3-epimerase YP_001844062.1 1432877 R 334390 CDS YP_001844063.1 184155723 6232115 complement(1433542..1434432) 1 NC_010610.1 hypothetical protein 1434432 6232115 LAF_1247 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844063.1 1433542 R 334390 CDS YP_001844064.1 184155724 6232116 complement(1434452..1436374) 1 NC_010610.1 serine/threonine protein kinase 1436374 6232116 LAF_1248 Lactobacillus fermentum IFO 3956 serine/threonine protein kinase YP_001844064.1 1434452 R 334390 CDS YP_001844065.1 184155725 6232117 complement(1436378..1437115) 1 NC_010610.1 serine/threonine specific protein phosphatase 1437115 6232117 LAF_1249 Lactobacillus fermentum IFO 3956 serine/threonine specific protein phosphatase YP_001844065.1 1436378 R 334390 CDS YP_001844066.1 184155726 6232118 complement(1437134..1438480) 1 NC_010610.1 rRNA methylase 1438480 6232118 LAF_1250 Lactobacillus fermentum IFO 3956 rRNA methylase YP_001844066.1 1437134 R 334390 CDS YP_001844067.1 184155727 6232119 complement(1438473..1439423) 1 NC_010610.1 methionyl-tRNA formyltransferase 1439423 6232119 LAF_1251 Lactobacillus fermentum IFO 3956 methionyl-tRNA formyltransferase YP_001844067.1 1438473 R 334390 CDS YP_001844068.1 184155728 6232120 complement(1439446..1441863) 1 NC_010610.1 primosomal protein N' 1441863 6232120 LAF_1252 Lactobacillus fermentum IFO 3956 primosomal protein N' YP_001844068.1 1439446 R 334390 CDS YP_001844069.1 184155729 6232121 complement(1441835..1443064) 1 NC_010610.1 flavoprotein 1443064 6232121 LAF_1253 Lactobacillus fermentum IFO 3956 flavoprotein YP_001844069.1 1441835 R 334390 CDS YP_001844070.1 184155730 6232122 complement(1443135..1443419) 1 NC_010610.1 DNA-directed RNA polymerase subunit omega 1443419 6232122 LAF_1254 Lactobacillus fermentum IFO 3956 DNA-directed RNA polymerase subunit omega YP_001844070.1 1443135 R 334390 CDS YP_001844071.1 184155731 6232123 complement(1443416..1444036) 1 NC_010610.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1444036 gmk 6232123 gmk Lactobacillus fermentum IFO 3956 guanylate kinase YP_001844071.1 1443416 R 334390 CDS YP_001844072.1 184155732 6232124 1444091..1444546 1 NC_010610.1 hypothetical protein 1444546 6232124 LAF_1256 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844072.1 1444091 D 334390 CDS YP_001844073.1 184155733 6232125 complement(1444638..1446332) 1 NC_010610.1 DNA repair protein RecN 1446332 6232125 LAF_1257 Lactobacillus fermentum IFO 3956 DNA repair protein RecN YP_001844073.1 1444638 R 334390 CDS YP_001844074.1 184155734 6232126 complement(1446350..1446799) 1 NC_010610.1 arginine repressor 1446799 6232126 LAF_1258 Lactobacillus fermentum IFO 3956 arginine repressor YP_001844074.1 1446350 R 334390 CDS YP_001844075.1 184155735 6232127 complement(1446813..1447628) 1 NC_010610.1 hemolysin 1447628 6232127 LAF_1259 Lactobacillus fermentum IFO 3956 hemolysin YP_001844075.1 1446813 R 334390 CDS YP_001844076.1 184155736 6232128 complement(1447638..1448513) 1 NC_010610.1 geranyltranstransferase 1448513 6232128 LAF_1260 Lactobacillus fermentum IFO 3956 geranyltranstransferase YP_001844076.1 1447638 R 334390 CDS YP_001844077.1 184155737 6232129 complement(1448513..1448806) 1 NC_010610.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1448806 6232129 LAF_1261 Lactobacillus fermentum IFO 3956 exodeoxyribonuclease VII small subunit YP_001844077.1 1448513 R 334390 CDS YP_001844078.1 184155738 6232130 complement(1448806..1450254) 1 NC_010610.1 exodeoxyribonuclease VII large subunit 1450254 6232130 LAF_1262 Lactobacillus fermentum IFO 3956 exodeoxyribonuclease VII large subunit YP_001844078.1 1448806 R 334390 CDS YP_001844079.1 184155739 6232131 complement(1450255..1451112) 1 NC_010610.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1451112 6232131 LAF_1263 Lactobacillus fermentum IFO 3956 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001844079.1 1450255 R 334390 CDS YP_001844080.1 184155740 6232132 complement(1451290..1451709) 1 NC_010610.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1451709 nusB 6232132 nusB Lactobacillus fermentum IFO 3956 transcription antitermination protein NusB YP_001844080.1 1451290 R 334390 CDS YP_001844081.1 184155741 6232133 complement(1451709..1452149) 1 NC_010610.1 hypothetical protein 1452149 6232133 LAF_1265 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844081.1 1451709 R 334390 CDS YP_001844082.1 184155742 6232134 complement(1452240..1453316) 1 NC_010610.1 Xaa-Pro aminopeptidase 1453316 6232134 LAF_1266 Lactobacillus fermentum IFO 3956 Xaa-Pro aminopeptidase YP_001844082.1 1452240 R 334390 CDS YP_001844083.1 184155743 6232135 complement(1453402..1453683) 1 NC_010610.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1453683 rpmA 6232135 rpmA Lactobacillus fermentum IFO 3956 50S ribosomal protein L27 YP_001844083.1 1453402 R 334390 CDS YP_001844084.1 184155744 6232136 complement(1453707..1454030) 1 NC_010610.1 hypothetical protein 1454030 6232136 LAF_1268 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844084.1 1453707 R 334390 CDS YP_001844085.1 184155745 6232137 complement(1454043..1454351) 1 NC_010610.1 50S ribosomal protein L21 1454351 rplU 6232137 rplU Lactobacillus fermentum IFO 3956 50S ribosomal protein L21 YP_001844085.1 1454043 R 334390 CDS YP_001844086.1 184155746 6232138 complement(1454515..1455156) 1 NC_010610.1 transcriptional regulator 1455156 6232138 LAF_1270 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844086.1 1454515 R 334390 CDS YP_001844087.1 184155747 6233555 complement(1455908..1456441) 1 NC_010610.1 hypothetical protein 1456441 6233555 LAF_1271 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844087.1 1455908 R 334390 CDS YP_001844088.1 184155748 6232140 complement(1456434..1457432) 1 NC_010610.1 hypothetical protein 1457432 6232140 LAF_1272 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844088.1 1456434 R 334390 CDS YP_001844089.1 184155749 6232141 complement(1457386..1458279) 1 NC_010610.1 hypothetical protein 1458279 6232141 LAF_1273 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844089.1 1457386 R 334390 CDS YP_001844090.1 184155750 6232142 1458547..1458675 1 NC_010610.1 hypothetical protein 1458675 6232142 LAF_1274 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844090.1 1458547 D 334390 CDS YP_001844091.1 184155751 6232143 complement(1458849..1460201) 1 NC_010610.1 glutamine synthase 1460201 6232143 LAF_1275 Lactobacillus fermentum IFO 3956 glutamine synthase YP_001844091.1 1458849 R 334390 CDS YP_001844092.1 184155752 6232144 complement(1460400..1461323) 1 NC_010610.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1461323 miaA 6232144 miaA Lactobacillus fermentum IFO 3956 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001844092.1 1460400 R 334390 CDS YP_001844093.1 184155753 6232145 1461404..1461598 1 NC_010610.1 hypothetical protein 1461598 6232145 LAF_1277 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844093.1 1461404 D 334390 CDS YP_001844094.1 184155754 6232146 complement(1461778..1462197) 1 NC_010610.1 hypothetical protein 1462197 6232146 LAF_1278 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844094.1 1461778 R 334390 CDS YP_001844095.1 184155755 6232147 complement(1462222..1463184) 1 NC_010610.1 glucose kinase 1463184 6232147 LAF_1279 Lactobacillus fermentum IFO 3956 glucose kinase YP_001844095.1 1462222 R 334390 CDS YP_001844096.1 184155756 6232148 complement(1463202..1463438) 1 NC_010610.1 hypothetical protein 1463438 6232148 LAF_1280 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844096.1 1463202 R 334390 CDS YP_001844097.1 184155757 6232149 complement(1463435..1464100) 1 NC_010610.1 hypothetical protein 1464100 6232149 LAF_1281 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844097.1 1463435 R 334390 CDS YP_001844098.1 184155758 6232150 complement(1464103..1464657) 1 NC_010610.1 5-formyltetrahydrofolate cyclo-ligase 1464657 6232150 LAF_1282 Lactobacillus fermentum IFO 3956 5-formyltetrahydrofolate cyclo-ligase YP_001844098.1 1464103 R 334390 CDS YP_001844099.1 184155759 6232151 complement(1464881..1465030) 1 NC_010610.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1465030 rpmG 6232151 rpmG Lactobacillus fermentum IFO 3956 50S ribosomal protein L33 YP_001844099.1 1464881 R 334390 CDS YP_001844100.1 184155760 6232152 complement(1465173..1467257) 1 NC_010610.1 penicillin binding protein 2B 1467257 6232152 LAF_1284 Lactobacillus fermentum IFO 3956 penicillin binding protein 2B YP_001844100.1 1465173 R 334390 CDS YP_001844101.1 184155761 6232153 1467460..1470087 1 NC_010610.1 hypothetical protein 1470087 6232153 LAF_1285 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844101.1 1467460 D 334390 CDS YP_001844102.1 184155762 6232154 complement(1470139..1470615) 1 NC_010610.1 transcription elongation factor GreA 1470615 6232154 LAF_1286 Lactobacillus fermentum IFO 3956 transcription elongation factor GreA YP_001844102.1 1470139 R 334390 CDS YP_001844103.1 184155763 6232155 complement(1470688..1471338) 1 NC_010610.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1471338 6232155 LAF_1287 Lactobacillus fermentum IFO 3956 uridine kinase YP_001844103.1 1470688 R 334390 CDS YP_001844104.1 184155764 6232156 complement(1471471..1473909) 1 NC_010610.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1473909 pheT 6232156 pheT Lactobacillus fermentum IFO 3956 phenylalanyl-tRNA synthetase subunit beta YP_001844104.1 1471471 R 334390 CDS YP_001844105.1 184155765 6232157 complement(1473915..1474961) 1 NC_010610.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1474961 pheS 6232157 pheS Lactobacillus fermentum IFO 3956 phenylalanyl-tRNA synthetase subunit alpha YP_001844105.1 1473915 R 334390 CDS YP_001844106.1 184155766 6232739 complement(1475252..1475599) 1 NC_010610.1 hypothetical protein 1475599 6232739 LAF_1290 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844106.1 1475252 R 334390 CDS YP_001844107.1 184155767 6232740 complement(1475604..1476110) 1 NC_010610.1 hypothetical protein 1476110 6232740 LAF_1291 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844107.1 1475604 R 334390 CDS YP_001844108.1 184155768 6232741 complement(1476224..1477003) 1 NC_010610.1 rRNA methylase 1477003 6232741 LAF_1292 Lactobacillus fermentum IFO 3956 rRNA methylase YP_001844108.1 1476224 R 334390 CDS YP_001844109.1 184155769 6232618 1477069..1477347 1 NC_010610.1 acylphosphatase 1477347 6232618 LAF_1293 Lactobacillus fermentum IFO 3956 acylphosphatase YP_001844109.1 1477069 D 334390 CDS YP_001844110.1 184155770 6232619 1477414..1478325 1 NC_010610.1 hypothetical protein 1478325 6232619 LAF_1294 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844110.1 1477414 D 334390 CDS YP_001844111.1 184155771 6232620 1478441..1478851 1 NC_010610.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1478851 6232620 LAF_1295 Lactobacillus fermentum IFO 3956 peptide deformylase YP_001844111.1 1478441 D 334390 CDS YP_001844112.1 184155772 6232621 1478972..1480324 1 NC_010610.1 hypothetical protein 1480324 6232621 LAF_1296 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844112.1 1478972 D 334390 CDS YP_001844113.1 184155773 6232622 complement(1480489..1482003) 1 NC_010610.1 two-component sensor histidine kinase 1482003 6232622 LAF_1297 Lactobacillus fermentum IFO 3956 two-component sensor histidine kinase YP_001844113.1 1480489 R 334390 CDS YP_001844114.1 184155774 6232623 complement(1482008..1482694) 1 NC_010610.1 two-component response regulator 1482694 6232623 LAF_1298 Lactobacillus fermentum IFO 3956 two-component response regulator YP_001844114.1 1482008 R 334390 CDS YP_001844115.1 184155775 6232624 complement(1482851..1483027) 1 NC_010610.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1483027 rpmF 6232624 rpmF Lactobacillus fermentum IFO 3956 50S ribosomal protein L32 YP_001844115.1 1482851 R 334390 CDS YP_001844116.1 184155776 6232625 complement(1483079..1483630) 1 NC_010610.1 hypothetical protein 1483630 6232625 LAF_1300 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844116.1 1483079 R 334390 CDS YP_001844117.1 184155777 6232626 complement(1483716..1484843) 1 NC_010610.1 hypothetical protein 1484843 6232626 LAF_1301 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844117.1 1483716 R 334390 CDS YP_001844118.1 184155778 6232627 complement(1484840..1485592) 1 NC_010610.1 hypothetical protein 1485592 6232627 LAF_1302 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844118.1 1484840 R 334390 CDS YP_001844119.1 184155779 6232628 complement(1485589..1485948) 1 NC_010610.1 hypothetical protein 1485948 6232628 LAF_1303 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844119.1 1485589 R 334390 CDS YP_001844120.1 184155780 6232629 complement(1485949..1486560) 1 NC_010610.1 hypothetical protein 1486560 6232629 LAF_1304 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844120.1 1485949 R 334390 CDS YP_001844121.1 184155781 6232630 complement(1486553..1487065) 1 NC_010610.1 hypothetical protein 1487065 6232630 LAF_1305 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844121.1 1486553 R 334390 CDS YP_001844122.1 184155782 6232631 complement(1487201..1487512) 1 NC_010610.1 hypothetical protein 1487512 6232631 LAF_1306 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844122.1 1487201 R 334390 CDS YP_001844123.1 184155783 6232632 complement(1487531..1488655) 1 NC_010610.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 1488655 6232632 LAF_1307 Lactobacillus fermentum IFO 3956 GTP-binding protein YqeH YP_001844123.1 1487531 R 334390 CDS YP_001844124.1 184155784 6232633 complement(1488639..1489178) 1 NC_010610.1 hypothetical protein 1489178 6232633 LAF_1308 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844124.1 1488639 R 334390 CDS YP_001844125.1 184155785 6232634 complement(1490112..1490465) 1 NC_010610.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1490465 rplT 6232634 rplT Lactobacillus fermentum IFO 3956 50S ribosomal protein L20 YP_001844125.1 1490112 R 334390 CDS YP_001844126.1 184155786 6232635 complement(1490515..1490712) 1 NC_010610.1 50S ribosomal protein L35 1490712 rpmI 6232635 rpmI Lactobacillus fermentum IFO 3956 50S ribosomal protein L35 YP_001844126.1 1490515 R 334390 CDS YP_001844127.1 184155787 6232636 complement(1490735..1491244) 1 NC_010610.1 translation initiation factor IF-3 1491244 6232636 LAF_1311 Lactobacillus fermentum IFO 3956 translation initiation factor IF-3 YP_001844127.1 1490735 R 334390 CDS YP_001844128.1 184155788 6232637 complement(1491462..1492406) 1 NC_010610.1 primosomal protein DnaI 1492406 6232637 LAF_1312 Lactobacillus fermentum IFO 3956 primosomal protein DnaI YP_001844128.1 1491462 R 334390 CDS YP_001844129.1 184155789 6232638 complement(1492439..1493803) 1 NC_010610.1 replication initiation and membrane attachment protein DnaB 1493803 6232638 LAF_1313 Lactobacillus fermentum IFO 3956 replication initiation and membrane attachment protein DnaB YP_001844129.1 1492439 R 334390 CDS YP_001844130.1 184155790 6232639 complement(1493800..1494258) 1 NC_010610.1 transcriptional regulator NrdR 1494258 nrdR 6232639 nrdR Lactobacillus fermentum IFO 3956 transcriptional regulator NrdR YP_001844130.1 1493800 R 334390 CDS YP_001844131.1 184155791 6232640 complement(1494303..1494923) 1 NC_010610.1 dephospho-CoA kinase 1494923 6232640 LAF_1315 Lactobacillus fermentum IFO 3956 dephospho-CoA kinase YP_001844131.1 1494303 R 334390 CDS YP_001844132.1 184155792 6232641 complement(1494916..1495755) 1 NC_010610.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1495755 6232641 LAF_1316 Lactobacillus fermentum IFO 3956 formamidopyrimidine-DNA glycosylase YP_001844132.1 1494916 R 334390 CDS YP_001844133.1 184155793 6232642 complement(1495840..1498500) 1 NC_010610.1 DNA-directed DNA polymerase I 1498500 6232642 LAF_1317 Lactobacillus fermentum IFO 3956 DNA-directed DNA polymerase I YP_001844133.1 1495840 R 334390 CDS YP_001844134.1 184155794 6232643 1498642..1499391 1 NC_010610.1 hypothetical protein 1499391 6232643 LAF_1318 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844134.1 1498642 D 334390 CDS YP_001844135.1 184155795 6232644 complement(1499429..1500139) 1 NC_010610.1 hypothetical protein 1500139 6232644 LAF_1319 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844135.1 1499429 R 334390 CDS YP_001844136.1 184155796 6232645 complement(1500235..1501548) 1 NC_010610.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1501548 murC 6232645 murC Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramate--L-alanine ligase YP_001844136.1 1500235 R 334390 CDS YP_001844137.1 184155797 6232646 complement(1501577..1502209) 1 NC_010610.1 hypothetical protein 1502209 6232646 LAF_1321 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844137.1 1501577 R 334390 CDS YP_001844138.1 184155798 6232647 complement(1502333..1502650) 1 NC_010610.1 thioredoxin 1502650 6232647 LAF_1322 Lactobacillus fermentum IFO 3956 thioredoxin YP_001844138.1 1502333 R 334390 CDS YP_001844139.1 184155799 6232648 1502826..1503158 1 NC_010610.1 hypothetical protein 1503158 6232648 LAF_1323 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844139.1 1502826 D 334390 CDS YP_001844140.1 184155800 6232649 complement(1503249..1503896) 1 NC_010610.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1503896 trmB 6232649 trmB Lactobacillus fermentum IFO 3956 tRNA (guanine-N(7)-)-methyltransferase YP_001844140.1 1503249 R 334390 CDS YP_001844141.1 184155801 6232650 complement(1503914..1505098) 1 NC_010610.1 ABC transporter permease 1505098 6232650 LAF_1325 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844141.1 1503914 R 334390 CDS YP_001844142.1 184155802 6232651 complement(1505091..1505816) 1 NC_010610.1 ABC transporter ATP-binding protein 1505816 6232651 LAF_1326 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844142.1 1505091 R 334390 CDS YP_001844143.1 184155803 6232652 1505965..1506393 1 NC_010610.1 histidine triad protein 1506393 6232652 LAF_1327 Lactobacillus fermentum IFO 3956 histidine triad protein YP_001844143.1 1505965 D 334390 CDS YP_001844144.1 184155804 6232653 1506395..1506628 1 NC_010610.1 hypothetical protein 1506628 6232653 LAF_1328 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844144.1 1506395 D 334390 CDS YP_001844145.1 184155805 6232654 complement(1506707..1507699) 1 NC_010610.1 peptidylprolyl isomerase 1507699 6232654 LAF_1329 Lactobacillus fermentum IFO 3956 peptidylprolyl isomerase YP_001844145.1 1506707 R 334390 CDS YP_001844146.1 184155806 6232655 complement(1507791..1508747) 1 NC_010610.1 hypothetical protein 1508747 6232655 LAF_1330 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844146.1 1507791 R 334390 CDS YP_001844147.1 184155807 6232656 complement(1508899..1509261) 1 NC_010610.1 hypothetical protein 1509261 6232656 LAF_1331 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844147.1 1508899 R 334390 CDS YP_001844148.1 184155808 6232657 complement(1509320..1511395) 1 NC_010610.1 penicillin binding protein 2A 1511395 6232657 LAF_1332 Lactobacillus fermentum IFO 3956 penicillin binding protein 2A YP_001844148.1 1509320 R 334390 CDS YP_001844149.1 184155809 6232658 complement(1511934..1513622) 1 NC_010610.1 arginyl-tRNA synthase 1513622 6232658 LAF_1333 Lactobacillus fermentum IFO 3956 arginyl-tRNA synthase YP_001844149.1 1511934 R 334390 CDS YP_001844150.1 184155810 6233556 complement(1514041..1514433) 1 NC_010610.1 hypothetical protein 1514433 6233556 LAF_1335 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844150.1 1514041 R 334390 CDS YP_001844151.1 184155811 6232661 1514399..1514881 1 NC_010610.1 hypothetical protein 1514881 6232661 LAF_1334 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844151.1 1514399 D 334390 CDS YP_001844152.1 184155812 6232660 complement(1514882..1515964) 1 NC_010610.1 dihydropteroate synthase 1515964 6232660 LAF_1336 Lactobacillus fermentum IFO 3956 dihydropteroate synthase YP_001844152.1 1514882 R 334390 CDS YP_001844153.1 184155813 6232662 complement(1515999..1516589) 1 NC_010610.1 hypothetical protein 1516589 6232662 LAF_1337 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844153.1 1515999 R 334390 CDS YP_001844154.1 184155814 6232663 complement(1516570..1517850) 1 NC_010610.1 folylpolyglutamate synthase 1517850 6232663 LAF_1338 Lactobacillus fermentum IFO 3956 folylpolyglutamate synthase YP_001844154.1 1516570 R 334390 CDS YP_001844155.1 184155815 6232664 complement(1517847..1518419) 1 NC_010610.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1518419 folE 6232664 folE Lactobacillus fermentum IFO 3956 GTP cyclohydrolase I YP_001844155.1 1517847 R 334390 CDS YP_001844156.1 184155816 6232665 complement(1518401..1518919) 1 NC_010610.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1518919 6232665 LAF_1340 Lactobacillus fermentum IFO 3956 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001844156.1 1518401 R 334390 CDS YP_001844157.1 184155817 6232666 complement(1518909..1519280) 1 NC_010610.1 dihydroneopterin aldolase 1519280 6232666 LAF_1341 Lactobacillus fermentum IFO 3956 dihydroneopterin aldolase YP_001844157.1 1518909 R 334390 CDS YP_001844158.1 184155818 6232667 complement(1519496..1520179) 1 NC_010610.1 hypothetical protein 1520179 6232667 LAF_1342 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844158.1 1519496 R 334390 CDS YP_001844159.1 184155819 6232668 complement(1520198..1521205) 1 NC_010610.1 transcriptional regulator 1521205 6232668 LAF_1343 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844159.1 1520198 R 334390 CDS YP_001844160.1 184155820 6232669 complement(1521279..1521887) 1 NC_010610.1 hypothetical protein 1521887 6232669 LAF_1344 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844160.1 1521279 R 334390 CDS YP_001844161.1 184155821 6232670 1522017..1522649 1 NC_010610.1 deoxyguanosine kinase 1522649 6232670 LAF_1345 Lactobacillus fermentum IFO 3956 deoxyguanosine kinase YP_001844161.1 1522017 D 334390 CDS YP_001844162.1 184155822 6232671 complement(1522749..1523870) 1 NC_010610.1 hypothetical protein 1523870 6232671 LAF_1346 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844162.1 1522749 R 334390 CDS YP_001844163.1 184155823 6232672 complement(1523958..1525367) 1 NC_010610.1 hypothetical protein 1525367 6232672 LAF_1347 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844163.1 1523958 R 334390 CDS YP_001844164.1 184155824 6232673 complement(1525471..1525971) 1 NC_010610.1 hypothetical protein 1525971 6232673 LAF_1348 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844164.1 1525471 R 334390 CDS YP_001844165.1 184155825 6232674 complement(1526051..1527451) 1 NC_010610.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 1527451 6232674 LAF_1349 Lactobacillus fermentum IFO 3956 dipeptidase PepV YP_001844165.1 1526051 R 334390 CDS YP_001844166.1 184155826 6232675 1527559..1528434 1 NC_010610.1 hypothetical protein 1528434 6232675 LAF_1350 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844166.1 1527559 D 334390 CDS YP_001844167.1 184155827 6232676 1528428..1528805 1 NC_010610.1 hypothetical protein 1528805 6232676 LAF_1351 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844167.1 1528428 D 334390 CDS YP_001844168.1 184155828 6232677 complement(1528850..1530496) 1 NC_010610.1 polysaccharide biosynthesis protein 1530496 6232677 LAF_1352 Lactobacillus fermentum IFO 3956 polysaccharide biosynthesis protein YP_001844168.1 1528850 R 334390 CDS YP_001844169.1 184155829 6232678 complement(1530609..1530884) 1 NC_010610.1 hypothetical protein 1530884 6232678 LAF_1353 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844169.1 1530609 R 334390 CDS YP_001844170.1 184155830 6232679 complement(1531316..1533733) 1 NC_010610.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1533733 leuS 6232679 leuS Lactobacillus fermentum IFO 3956 leucyl-tRNA synthetase YP_001844170.1 1531316 R 334390 CDS YP_001844171.1 184155831 6232680 1534062..1534802 1 NC_010610.1 hypothetical protein 1534802 6232680 LAF_1355 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844171.1 1534062 D 334390 CDS YP_001844172.1 184155832 6232681 complement(1535061..1536302) 1 NC_010610.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1536302 proA 6232681 proA Lactobacillus fermentum IFO 3956 gamma-glutamyl phosphate reductase YP_001844172.1 1535061 R 334390 CDS YP_001844173.1 184155833 6232682 complement(1536305..1537102) 1 NC_010610.1 glutamate 5-kinase 1537102 6232682 LAF_1357 Lactobacillus fermentum IFO 3956 glutamate 5-kinase YP_001844173.1 1536305 R 334390 CDS YP_001844174.1 184155834 6232683 complement(1537379..1538566) 1 NC_010610.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1538566 6232683 LAF_1358 Lactobacillus fermentum IFO 3956 S-adenosylmethionine synthetase YP_001844174.1 1537379 R 334390 CDS YP_001844175.1 184155835 6232684 1538760..1539491 1 NC_010610.1 hypothetical protein 1539491 6232684 LAF_1359 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844175.1 1538760 D 334390 CDS YP_001844176.1 184155836 6232685 complement(1539585..1540121) 1 NC_010610.1 DNA-3-methyladenine glycosylase I 1540121 6232685 LAF_1360 Lactobacillus fermentum IFO 3956 DNA-3-methyladenine glycosylase I YP_001844176.1 1539585 R 334390 CDS YP_001844177.1 184155837 6232686 complement(1540160..1541593) 1 NC_010610.1 multidrug transport protein 1541593 6232686 LAF_1361 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001844177.1 1540160 R 334390 CDS YP_001844178.1 184155838 6232687 1541715..1542170 1 NC_010610.1 ferric uptake regulator 1542170 6232687 LAF_1362 Lactobacillus fermentum IFO 3956 ferric uptake regulator YP_001844178.1 1541715 D 334390 CDS YP_001844179.1 184155839 6232688 complement(1542390..1543757) 1 NC_010610.1 amino acid transporter 1543757 6232688 LAF_1363 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844179.1 1542390 R 334390 CDS YP_001844180.1 184155840 6232689 1543929..1544087 1 NC_010610.1 hypothetical protein 1544087 6232689 LAF_1364 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844180.1 1543929 D 334390 CDS YP_001844181.1 184155841 6232690 1544097..1544714 1 NC_010610.1 hypothetical protein 1544714 6232690 LAF_1365 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844181.1 1544097 D 334390 CDS YP_001844182.1 184155842 6232691 complement(1544817..1545059) 1 NC_010610.1 hypothetical protein 1545059 6232691 LAF_1366 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844182.1 1544817 R 334390 CDS YP_001844183.1 184155843 6232692 complement(1545082..1545333) 1 NC_010610.1 hypothetical protein 1545333 6232692 LAF_1367 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844183.1 1545082 R 334390 CDS YP_001844184.1 184155844 6232693 1545597..1546283 1 NC_010610.1 hypothetical protein 1546283 6232693 LAF_1368 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844184.1 1545597 D 334390 CDS YP_001844185.1 184155845 6232694 complement(1546438..1546869) 1 NC_010610.1 small heat shock protein 1546869 6232694 LAF_1369 Lactobacillus fermentum IFO 3956 small heat shock protein YP_001844185.1 1546438 R 334390 CDS YP_001844186.1 184155846 6232695 complement(1547081..1547584) 1 NC_010610.1 acyl-CoA hydrolase 1547584 6232695 LAF_1370 Lactobacillus fermentum IFO 3956 acyl-CoA hydrolase YP_001844186.1 1547081 R 334390 CDS YP_001844187.1 184155847 6232696 complement(1547738..1548553) 1 NC_010610.1 extracellular protein 1548553 6232696 LAF_1371 Lactobacillus fermentum IFO 3956 extracellular protein YP_001844187.1 1547738 R 334390 CDS YP_001844188.1 184155848 6232697 complement(1548962..1550032) 1 NC_010610.1 alcohol dehydrogenase 1550032 6232697 LAF_1372 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001844188.1 1548962 R 334390 CDS YP_001844189.1 184155849 6232742 complement(1550241..1551578) 1 NC_010610.1 uracil-xanthine transport protein 1551578 6232742 LAF_1373 Lactobacillus fermentum IFO 3956 uracil-xanthine transport protein YP_001844189.1 1550241 R 334390 CDS YP_001844190.1 184155850 6232743 complement(1551729..1552601) 1 NC_010610.1 hypothetical protein 1552601 6232743 LAF_1374 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844190.1 1551729 R 334390 CDS YP_001844191.1 184155851 6232494 complement(1552610..1553191) 1 NC_010610.1 anaerobic ribonucleotide reductase activator protein 1553191 6232494 LAF_1375 Lactobacillus fermentum IFO 3956 anaerobic ribonucleotide reductase activator protein YP_001844191.1 1552610 R 334390 CDS YP_001844192.1 184155852 6232495 complement(1553136..1555346) 1 NC_010610.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1555346 6232495 LAF_1376 Lactobacillus fermentum IFO 3956 anaerobic ribonucleoside triphosphate reductase YP_001844192.1 1553136 R 334390 CDS YP_001844193.1 184155853 6232496 complement(1555719..1556408) 1 NC_010610.1 glutamate ABC transporter permease 1556408 6232496 LAF_1377 Lactobacillus fermentum IFO 3956 glutamate ABC transporter permease YP_001844193.1 1555719 R 334390 CDS YP_001844194.1 184155854 6232497 complement(1556425..1557246) 1 NC_010610.1 glutamate ABC transporter substrate-binding protein 1557246 6232497 LAF_1378 Lactobacillus fermentum IFO 3956 glutamate ABC transporter substrate-binding protein YP_001844194.1 1556425 R 334390 CDS YP_001844195.1 184155855 6232498 1557979..1558128 1 NC_010610.1 hypothetical protein 1558128 6232498 LAF_1379 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844195.1 1557979 D 334390 CDS YP_001844196.1 184155856 6232499 1558331..1558711 1 NC_010610.1 hypothetical protein 1558711 6232499 LAF_1380 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844196.1 1558331 D 334390 CDS YP_001844197.1 184155857 6233026 complement(1565169..1565417) 1 NC_010610.1 hypothetical protein 1565417 6233026 LAF_1381 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844197.1 1565169 R 334390 CDS YP_001844198.1 184155858 6232501 complement(1565751..1566770) 1 NC_010610.1 hypothetical protein 1566770 6232501 LAF_1382 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844198.1 1565751 R 334390 CDS YP_001844199.1 184155859 6232502 complement(1566772..1567797) 1 NC_010610.1 glycosyltransferase 1567797 6232502 LAF_1383 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844199.1 1566772 R 334390 CDS YP_001844200.1 184155860 6232503 complement(1567790..1569007) 1 NC_010610.1 glycosyltransferase 1569007 6232503 LAF_1384 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844200.1 1567790 R 334390 CDS YP_001844201.1 184155861 6232504 complement(1569223..1570953) 1 NC_010610.1 PTS enzyme I 1570953 6232504 LAF_1385 Lactobacillus fermentum IFO 3956 PTS enzyme I YP_001844201.1 1569223 R 334390 CDS YP_001844202.1 184155862 6232505 complement(1570955..1571221) 1 NC_010610.1 phosphocarrier protein HPr 1571221 6232505 LAF_1386 Lactobacillus fermentum IFO 3956 phosphocarrier protein HPr YP_001844202.1 1570955 R 334390 CDS YP_001844203.1 184155863 6232506 complement(1571351..1571593) 1 NC_010610.1 hypothetical protein 1571593 6232506 LAF_1387 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844203.1 1571351 R 334390 CDS YP_001844204.1 184155864 6232507 1571767..1574013 1 NC_010610.1 ATP-dependent Clp protease ATP-binding subunit 1574013 6232507 LAF_1388 Lactobacillus fermentum IFO 3956 ATP-dependent Clp protease ATP-binding subunit YP_001844204.1 1571767 D 334390 CDS YP_001844205.1 184155865 6232508 1574266..1574973 1 NC_010610.1 hypothetical protein 1574973 6232508 LAF_1389 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844205.1 1574266 D 334390 CDS YP_001844206.1 184155866 6232509 1575100..1575675 1 NC_010610.1 pyrazinamidase/nicotinamidase 1575675 6232509 LAF_1390 Lactobacillus fermentum IFO 3956 pyrazinamidase/nicotinamidase YP_001844206.1 1575100 D 334390 CDS YP_001844207.1 184155867 6232510 1575668..1577095 1 NC_010610.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1577095 6232510 LAF_1391 Lactobacillus fermentum IFO 3956 nicotinate phosphoribosyltransferase YP_001844207.1 1575668 D 334390 CDS YP_001844208.1 184155868 6232511 complement(1577260..1577853) 1 NC_010610.1 hypothetical protein 1577853 6232511 LAF_1392 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844208.1 1577260 R 334390 CDS YP_001844209.1 184155869 6232512 1578009..1578728 1 NC_010610.1 hypothetical protein 1578728 6232512 LAF_1393 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844209.1 1578009 D 334390 CDS YP_001844210.1 184155870 6232513 1578739..1579527 1 NC_010610.1 pyrroline-5-carboxylate reductase 1579527 6232513 LAF_1394 Lactobacillus fermentum IFO 3956 pyrroline-5-carboxylate reductase YP_001844210.1 1578739 D 334390 CDS YP_001844211.1 184155871 6232514 1579484..1580401 1 NC_010610.1 hypothetical protein 1580401 6232514 LAF_1395 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844211.1 1579484 D 334390 CDS YP_001844212.1 184155872 6232515 1580483..1581724 1 NC_010610.1 hypothetical protein 1581724 6232515 LAF_1396 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844212.1 1580483 D 334390 CDS YP_001844213.1 184155873 6232516 complement(1582033..1582176) 1 NC_010610.1 hypothetical protein 1582176 6232516 LAF_1397 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844213.1 1582033 R 334390 CDS YP_001844214.1 184155874 6232517 complement(1582367..1583065) 1 NC_010610.1 hypothetical protein 1583065 6232517 LAF_1398 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844214.1 1582367 R 334390 CDS YP_001844215.1 184155875 6232518 complement(1583078..1583938) 1 NC_010610.1 ABC transporter ATP-binding protein 1583938 6232518 LAF_1399 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844215.1 1583078 R 334390 CDS YP_001844216.1 184155876 6232519 complement(1583925..1584302) 1 NC_010610.1 transcriptional regulator 1584302 6232519 LAF_1400 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844216.1 1583925 R 334390 CDS YP_001844217.1 184155877 6232520 complement(1584412..1585344) 1 NC_010610.1 dTDP-glucose 4,6-dehydratase 1585344 6232520 LAF_1401 Lactobacillus fermentum IFO 3956 dTDP-glucose 4,6-dehydratase YP_001844217.1 1584412 R 334390 CDS YP_001844218.1 184155878 6232521 complement(1585438..1586391) 1 NC_010610.1 glycosyltransferase 1586391 6232521 LAF_1402 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844218.1 1585438 R 334390 CDS YP_001844219.1 184155879 6232522 complement(1586602..1588278) 1 NC_010610.1 hypothetical protein 1588278 6232522 LAF_1403 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844219.1 1586602 R 334390 CDS YP_001844220.1 184155880 6232523 complement(1588336..1589916) 1 NC_010610.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1589916 prfC 6232523 prfC Lactobacillus fermentum IFO 3956 peptide chain release factor 3 YP_001844220.1 1588336 R 334390 CDS YP_001844221.1 184155881 6232524 complement(1590017..1590964) 1 NC_010610.1 glycosyltransferase 1590964 6232524 LAF_1405 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844221.1 1590017 R 334390 CDS YP_001844222.1 184155882 6232525 complement(1590974..1592752) 1 NC_010610.1 hypothetical protein 1592752 6232525 LAF_1406 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844222.1 1590974 R 334390 CDS YP_001844223.1 184155883 6232526 complement(1592823..1593803) 1 NC_010610.1 glycosyltransferase 1593803 6232526 LAF_1407 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844223.1 1592823 R 334390 CDS YP_001844224.1 184155884 6232527 complement(1593975..1595084) 1 NC_010610.1 hypothetical protein 1595084 6232527 LAF_1408 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844224.1 1593975 R 334390 CDS YP_001844225.1 184155885 6232528 complement(1595084..1596016) 1 NC_010610.1 glycosyltransferase 1596016 6232528 LAF_1409 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844225.1 1595084 R 334390 CDS YP_001844226.1 184155886 6232529 complement(1596811..1598223) 1 NC_010610.1 hypothetical protein 1598223 6232529 LAF_1410 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844226.1 1596811 R 334390 CDS YP_001844227.1 184155887 6232530 1600832..1601134 1 NC_010610.1 hypothetical protein 1601134 6232530 LAF_1411 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844227.1 1600832 D 334390 CDS YP_001844228.1 184155888 6232531 1601158..1601994 1 NC_010610.1 transposase 1601994 6232531 LAF_1412 Lactobacillus fermentum IFO 3956 transposase YP_001844228.1 1601158 D 334390 CDS YP_001844229.1 184155889 6232532 complement(1602480..1603571) 1 NC_010610.1 O-acetyltransferase 1603571 6232532 LAF_1413 Lactobacillus fermentum IFO 3956 O-acetyltransferase YP_001844229.1 1602480 R 334390 CDS YP_001844230.1 184155890 6232533 complement(1603594..1604598) 1 NC_010610.1 glycosyltransferase 1604598 6232533 LAF_1414 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844230.1 1603594 R 334390 CDS YP_001844231.1 184155891 6232534 complement(1604607..1606037) 1 NC_010610.1 hypothetical protein 1606037 6232534 LAF_1415 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844231.1 1604607 R 334390 CDS YP_001844232.1 184155892 6232535 complement(1606040..1607161) 1 NC_010610.1 UDP-galactopyranose mutase 1607161 6232535 LAF_1416 Lactobacillus fermentum IFO 3956 UDP-galactopyranose mutase YP_001844232.1 1606040 R 334390 CDS YP_001844233.1 184155893 6232536 1607300..1608361 1 NC_010610.1 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 1608361 6232536 LAF_1417 Lactobacillus fermentum IFO 3956 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_001844233.1 1607300 D 334390 CDS YP_001844234.1 184155894 6232537 complement(1609566..1610582) 1 NC_010610.1 transposase 1610582 6232537 LAF_1418 Lactobacillus fermentum IFO 3956 transposase YP_001844234.1 1609566 R 334390 CDS YP_001844235.1 184155895 6232538 complement(1612346..1613566) 1 NC_010610.1 transposase 1613566 6232538 LAF_1419 Lactobacillus fermentum IFO 3956 transposase YP_001844235.1 1612346 R 334390 CDS YP_001844236.1 184155896 6232539 complement(1613643..1614521) 1 NC_010610.1 transposase 1614521 6232539 LAF_1420 Lactobacillus fermentum IFO 3956 transposase YP_001844236.1 1613643 R 334390 CDS YP_001844237.1 184155897 6232540 complement(1614545..1614847) 1 NC_010610.1 hypothetical protein 1614847 6232540 LAF_1421 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844237.1 1614545 R 334390 CDS YP_001844238.1 184155898 6232541 1616166..1616915 1 NC_010610.1 hypothetical protein 1616915 6232541 LAF_1422 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844238.1 1616166 D 334390 CDS YP_001844239.1 184155899 6232542 complement(1616899..1618173) 1 NC_010610.1 hypothetical protein 1618173 6232542 LAF_1423 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844239.1 1616899 R 334390 CDS YP_001844240.1 184155900 6232543 complement(1618133..1618894) 1 NC_010610.1 glycosyltransferase 1618894 6232543 LAF_1424 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844240.1 1618133 R 334390 CDS YP_001844241.1 184155901 6232544 complement(1618906..1619580) 1 NC_010610.1 glycosyltransferase 1619580 6232544 LAF_1425 Lactobacillus fermentum IFO 3956 glycosyltransferase YP_001844241.1 1618906 R 334390 CDS YP_001844242.1 184155902 6232545 complement(1619729..1620547) 1 NC_010610.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1620547 recX 6232545 recX Lactobacillus fermentum IFO 3956 recombination regulator RecX YP_001844242.1 1619729 R 334390 CDS YP_001844243.1 184155903 6232546 1620641..1620847 1 NC_010610.1 hypothetical protein 1620847 6232546 LAF_1427 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844243.1 1620641 D 334390 CDS YP_001844244.1 184155904 6232547 1620883..1621098 1 NC_010610.1 hypothetical protein 1621098 6232547 LAF_1428 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844244.1 1620883 D 334390 CDS YP_001844245.1 184155905 6232548 complement(1621279..1622205) 1 NC_010610.1 hypothetical protein 1622205 6232548 LAF_1429 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844245.1 1621279 R 334390 CDS YP_001844246.1 184155906 6232549 complement(1622304..1625243) 1 NC_010610.1 hypothetical protein 1625243 6232549 LAF_1430 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844246.1 1622304 R 334390 CDS YP_001844247.1 184155907 6232550 complement(1625400..1626257) 1 NC_010610.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1626257 6232550 LAF_1431 Lactobacillus fermentum IFO 3956 methionine aminopeptidase YP_001844247.1 1625400 R 334390 CDS YP_001844248.1 184155908 6232551 1626370..1626816 1 NC_010610.1 flavodoxin 1626816 6232551 LAF_1432 Lactobacillus fermentum IFO 3956 flavodoxin YP_001844248.1 1626370 D 334390 CDS YP_001844249.1 184155909 6232552 1626826..1627260 1 NC_010610.1 teichoic acid glycosylation protein 1627260 6232552 LAF_1433 Lactobacillus fermentum IFO 3956 teichoic acid glycosylation protein YP_001844249.1 1626826 D 334390 CDS YP_001844250.1 184155910 6233567 complement(1627916..1629244) 1 NC_010610.1 ATP-dependent RNA helicase 1629244 6233567 LAF_1434 Lactobacillus fermentum IFO 3956 ATP-dependent RNA helicase YP_001844250.1 1627916 R 334390 CDS YP_001844251.1 184155911 6232554 complement(1629248..1630258) 1 NC_010610.1 oxidoreductase 1630258 6232554 LAF_1435 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001844251.1 1629248 R 334390 CDS YP_001844252.1 184155912 6232555 1630423..1630788 1 NC_010610.1 hypothetical protein 1630788 6232555 LAF_1436 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844252.1 1630423 D 334390 CDS YP_001844253.1 184155913 6232556 1630930..1631499 1 NC_010610.1 hypothetical protein 1631499 6232556 LAF_1437 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844253.1 1630930 D 334390 CDS YP_001844254.1 184155914 6232557 complement(1631500..1632402) 1 NC_010610.1 L-2-hydroxyisocaproate dehydrogenase 1632402 6232557 LAF_1438 Lactobacillus fermentum IFO 3956 L-2-hydroxyisocaproate dehydrogenase YP_001844254.1 1631500 R 334390 CDS YP_001844255.1 184155915 6232558 complement(1632570..1634081) 1 NC_010610.1 glutamate-cysteine ligase 1634081 6232558 LAF_1439 Lactobacillus fermentum IFO 3956 glutamate-cysteine ligase YP_001844255.1 1632570 R 334390 CDS YP_001844256.1 184155916 6232559 complement(1634190..1634969) 1 NC_010610.1 hypothetical protein 1634969 6232559 LAF_1440 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844256.1 1634190 R 334390 CDS YP_001844257.1 184155917 6232560 complement(1636008..1637639) 1 NC_010610.1 ABC transporter ATP-binding protein 1637639 6232560 LAF_1441 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844257.1 1636008 R 334390 CDS YP_001844258.1 184155918 6232561 complement(1637804..1638271) 1 NC_010610.1 hypothetical protein 1638271 6232561 LAF_1442 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844258.1 1637804 R 334390 CDS YP_001844259.1 184155919 6232562 complement(1638352..1638915) 1 NC_010610.1 hypothetical protein 1638915 6232562 LAF_1443 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844259.1 1638352 R 334390 CDS YP_001844260.1 184155920 6232563 complement(1639385..1640644) 1 NC_010610.1 transcriptional regulator 1640644 6232563 LAF_1444 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844260.1 1639385 R 334390 CDS YP_001844261.1 184155921 6232564 complement(1640867..1641415) 1 NC_010610.1 hypothetical protein 1641415 6232564 LAF_1445 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844261.1 1640867 R 334390 CDS YP_001844262.1 184155922 6232565 1642818..1643336 1 NC_010610.1 methylated DNA-protein cysteine methyltransferase 1643336 6232565 LAF_1446 Lactobacillus fermentum IFO 3956 methylated DNA-protein cysteine methyltransferase YP_001844262.1 1642818 D 334390 CDS YP_001844263.1 184155923 6232566 1643427..1644020 1 NC_010610.1 hypothetical protein 1644020 6232566 LAF_1447 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844263.1 1643427 D 334390 CDS YP_001844264.1 184155924 6232567 1644038..1644259 1 NC_010610.1 hypothetical protein 1644259 6232567 LAF_1448 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844264.1 1644038 D 334390 CDS YP_001844265.1 184155925 6232568 complement(1644297..1644986) 1 NC_010610.1 hypothetical protein 1644986 6232568 LAF_1449 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844265.1 1644297 R 334390 CDS YP_001844266.1 184155926 6232569 complement(1645149..1645721) 1 NC_010610.1 dinucleotide-binding enzyme 1645721 6232569 LAF_1450 Lactobacillus fermentum IFO 3956 dinucleotide-binding enzyme YP_001844266.1 1645149 R 334390 CDS YP_001844267.1 184155927 6232570 complement(1645724..1646050) 1 NC_010610.1 hypothetical protein 1646050 6232570 LAF_1451 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844267.1 1645724 R 334390 CDS YP_001844268.1 184155928 6232571 complement(1646309..1647871) 1 NC_010610.1 cell division protein 1647871 6232571 LAF_1452 Lactobacillus fermentum IFO 3956 cell division protein YP_001844268.1 1646309 R 334390 CDS YP_001844269.1 184155929 6232572 complement(1647911..1648417) 1 NC_010610.1 hypothetical protein 1648417 6232572 LAF_1453 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844269.1 1647911 R 334390 CDS YP_001844270.1 184155930 6232573 1648463..1648780 1 NC_010610.1 hypothetical protein 1648780 6232573 LAF_1454 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844270.1 1648463 D 334390 CDS YP_001844271.1 184155931 6233492 1648815..1649237 1 NC_010610.1 hypothetical protein 1649237 6233492 LAF_1455 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844271.1 1648815 D 334390 CDS YP_001844272.1 184155932 6231942 1649804..1651021 1 NC_010610.1 Na-H antiporter 1651021 6231942 LAF_1456 Lactobacillus fermentum IFO 3956 Na-H antiporter YP_001844272.1 1649804 D 334390 CDS YP_001844273.1 184155933 6231943 1651474..1652568 1 NC_010610.1 hypothetical protein 1652568 6231943 LAF_1457 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844273.1 1651474 D 334390 CDS YP_001844274.1 184155934 6231944 1653814..1654659 1 NC_010610.1 transposase 1654659 6231944 LAF_1458 Lactobacillus fermentum IFO 3956 transposase YP_001844274.1 1653814 D 334390 CDS YP_001844275.1 184155935 6231945 complement(1655365..1656585) 1 NC_010610.1 transposase 1656585 6231945 LAF_1459 Lactobacillus fermentum IFO 3956 transposase YP_001844275.1 1655365 R 334390 CDS YP_001844276.1 184155936 6231946 complement(1659075..1660445) 1 NC_010610.1 NADH peroxidase 1660445 6231946 LAF_1460 Lactobacillus fermentum IFO 3956 NADH peroxidase YP_001844276.1 1659075 R 334390 CDS YP_001844277.1 184155937 6231947 complement(1660512..1661732) 1 NC_010610.1 transposase 1661732 6231947 LAF_1461 Lactobacillus fermentum IFO 3956 transposase YP_001844277.1 1660512 R 334390 CDS YP_001844278.1 184155938 6231948 1662512..1662814 1 NC_010610.1 hypothetical protein 1662814 6231948 LAF_1462 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844278.1 1662512 D 334390 CDS YP_001844279.1 184155939 6231949 1662838..1663716 1 NC_010610.1 transposase 1663716 6231949 LAF_1463 Lactobacillus fermentum IFO 3956 transposase YP_001844279.1 1662838 D 334390 CDS YP_001844280.1 184155940 6231950 complement(1664469..1665119) 1 NC_010610.1 transcriptional regulator 1665119 6231950 LAF_1464 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844280.1 1664469 R 334390 CDS YP_001844281.1 184155941 6231951 complement(1665144..1665425) 1 NC_010610.1 hypothetical protein 1665425 6231951 LAF_1465 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844281.1 1665144 R 334390 CDS YP_001844282.1 184155942 6231952 complement(1665477..1665704) 1 NC_010610.1 hypothetical protein 1665704 6231952 LAF_1466 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844282.1 1665477 R 334390 CDS YP_001844283.1 184155943 6231953 1668616..1669755 1 NC_010610.1 transposase 1669755 6231953 LAF_1467 Lactobacillus fermentum IFO 3956 transposase YP_001844283.1 1668616 D 334390 CDS YP_001844284.1 184155944 6231954 complement(1671472..1672659) 1 NC_010610.1 transposase 1672659 6231954 LAF_1468 Lactobacillus fermentum IFO 3956 transposase YP_001844284.1 1671472 R 334390 CDS YP_001844285.1 184155945 6231955 complement(1672803..1674179) 1 NC_010610.1 RNA methyltransferase 1674179 6231955 LAF_1469 Lactobacillus fermentum IFO 3956 RNA methyltransferase YP_001844285.1 1672803 R 334390 CDS YP_001844286.1 184155946 6231956 complement(1674294..1675301) 1 NC_010610.1 similar to YegS from E. coli; lipid kinase 1675301 6231956 LAF_1470 Lactobacillus fermentum IFO 3956 lipid kinase YP_001844286.1 1674294 R 334390 CDS YP_001844287.1 184155947 6231957 complement(1675314..1676738) 1 NC_010610.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1676738 gatB 6231957 gatB Lactobacillus fermentum IFO 3956 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001844287.1 1675314 R 334390 CDS YP_001844288.1 184155948 6231958 complement(1676753..1678216) 1 NC_010610.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1678216 gatA 6231958 gatA Lactobacillus fermentum IFO 3956 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001844288.1 1676753 R 334390 CDS YP_001844289.1 184155949 6231959 complement(1678216..1678536) 1 NC_010610.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1678536 gatC 6231959 gatC Lactobacillus fermentum IFO 3956 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001844289.1 1678216 R 334390 CDS YP_001844290.1 184155950 6231960 complement(1678711..1679823) 1 NC_010610.1 lipoprotein 1679823 6231960 LAF_1474 Lactobacillus fermentum IFO 3956 lipoprotein YP_001844290.1 1678711 R 334390 CDS YP_001844291.1 184155951 6231961 complement(1679826..1681865) 1 NC_010610.1 NAD-dependent DNA ligase 1681865 6231961 LAF_1475 Lactobacillus fermentum IFO 3956 NAD-dependent DNA ligase YP_001844291.1 1679826 R 334390 CDS YP_001844292.1 184155952 6231962 complement(1681867..1684137) 1 NC_010610.1 ATP-dependent DNA helicase 1684137 6231962 LAF_1476 Lactobacillus fermentum IFO 3956 ATP-dependent DNA helicase YP_001844292.1 1681867 R 334390 CDS YP_001844293.1 184155953 6231963 complement(1684315..1685487) 1 NC_010610.1 phosphoribosylaminoimidazole carboxylase ATPase subunit 1685487 6231963 LAF_1477 Lactobacillus fermentum IFO 3956 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001844293.1 1684315 R 334390 CDS YP_001844294.1 184155954 6231964 complement(1685489..1686076) 1 NC_010610.1 xanthine phosphoribosyltransferase 1686076 6231964 LAF_1478 Lactobacillus fermentum IFO 3956 xanthine phosphoribosyltransferase YP_001844294.1 1685489 R 334390 CDS YP_001844295.1 184155955 6231965 complement(1686092..1686706) 1 NC_010610.1 N-acetylmuramidase 1686706 6231965 LAF_1479 Lactobacillus fermentum IFO 3956 N-acetylmuramidase YP_001844295.1 1686092 R 334390 CDS YP_001844296.1 184155956 6231966 complement(1687101..1687874) 1 NC_010610.1 acetoin reductase 1687874 6231966 LAF_1480 Lactobacillus fermentum IFO 3956 acetoin reductase YP_001844296.1 1687101 R 334390 CDS YP_001844297.1 184155957 6231967 1688168..1689271 1 NC_010610.1 hypothetical protein 1689271 6231967 LAF_1481 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844297.1 1688168 D 334390 CDS YP_001844298.1 184155958 6231968 complement(1689322..1689717) 1 NC_010610.1 30S ribosomal protein S9 1689717 6231968 LAF_1482 Lactobacillus fermentum IFO 3956 30S ribosomal protein S9 YP_001844298.1 1689322 R 334390 CDS YP_001844299.1 184155959 6231969 complement(1689731..1690174) 1 NC_010610.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1690174 rplM 6231969 rplM Lactobacillus fermentum IFO 3956 50S ribosomal protein L13 YP_001844299.1 1689731 R 334390 CDS YP_001844300.1 184155960 6231970 complement(1690281..1691057) 1 NC_010610.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1691057 truA 6231970 truA Lactobacillus fermentum IFO 3956 tRNA pseudouridine synthase A YP_001844300.1 1690281 R 334390 CDS YP_001844301.1 184155961 6231971 complement(1691073..1691876) 1 NC_010610.1 ABC transporter permease 1691876 6231971 LAF_1485 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844301.1 1691073 R 334390 CDS YP_001844302.1 184155962 6231972 complement(1691869..1692741) 1 NC_010610.1 ABC transporter ATP-binding protein 1692741 6231972 LAF_1486 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844302.1 1691869 R 334390 CDS YP_001844303.1 184155963 6231973 complement(1692708..1693544) 1 NC_010610.1 ABC transporter ATP-binding protein 1693544 6231973 LAF_1487 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844303.1 1692708 R 334390 CDS YP_001844304.1 184155964 6231974 complement(1693735..1694115) 1 NC_010610.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1694115 rplQ 6231974 rplQ Lactobacillus fermentum IFO 3956 50S ribosomal protein L17 YP_001844304.1 1693735 R 334390 CDS YP_001844305.1 184155965 6231975 complement(1694148..1695092) 1 NC_010610.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the subunit alpha is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1695092 6231975 LAF_1489 Lactobacillus fermentum IFO 3956 DNA-directed RNA polymerase subunit alpha YP_001844305.1 1694148 R 334390 CDS YP_001844306.1 184155966 6231976 complement(1695175..1695564) 1 NC_010610.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1695564 6231976 LAF_1490 Lactobacillus fermentum IFO 3956 30S ribosomal protein S11 YP_001844306.1 1695175 R 334390 CDS YP_001844307.1 184155967 6231977 complement(1695596..1695961) 1 NC_010610.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1695961 rpsM 6231977 rpsM Lactobacillus fermentum IFO 3956 30S ribosomal protein S13 YP_001844307.1 1695596 R 334390 CDS YP_001844308.1 184155968 6231978 complement(1695987..1696103) 1 NC_010610.1 50S ribosomal protein L36 1696103 6231978 LAF_1492 Lactobacillus fermentum IFO 3956 50S ribosomal protein L36 YP_001844308.1 1695987 R 334390 CDS YP_001844309.1 184155969 6231979 complement(1696141..1696359) 1 NC_010610.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1696359 infA 6231979 infA Lactobacillus fermentum IFO 3956 translation initiation factor IF-1 YP_001844309.1 1696141 R 334390 CDS YP_001844310.1 184155970 6231980 complement(1696501..1697151) 1 NC_010610.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1697151 adk 6231980 adk Lactobacillus fermentum IFO 3956 adenylate kinase YP_001844310.1 1696501 R 334390 CDS YP_001844311.1 184155971 6231981 complement(1697182..1698480) 1 NC_010610.1 preprotein translocase SecY subunit 1698480 6231981 LAF_1495 Lactobacillus fermentum IFO 3956 preprotein translocase SecY subunit YP_001844311.1 1697182 R 334390 CDS YP_001844312.1 184155972 6231982 complement(1698481..1698915) 1 NC_010610.1 late assembly protein; 50S ribosomal protein L15 1698915 rplO 6231982 rplO Lactobacillus fermentum IFO 3956 50S ribosomal protein L15 YP_001844312.1 1698481 R 334390 CDS YP_001844313.1 184155973 6231983 complement(1698947..1699129) 1 NC_010610.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1699129 rpmD 6231983 rpmD Lactobacillus fermentum IFO 3956 50S ribosomal protein L30 YP_001844313.1 1698947 R 334390 CDS YP_001844314.1 184155974 6231984 complement(1699143..1699652) 1 NC_010610.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1699652 rpsE 6231984 rpsE Lactobacillus fermentum IFO 3956 30S ribosomal protein S5 YP_001844314.1 1699143 R 334390 CDS YP_001844315.1 184155975 6231985 complement(1699675..1700040) 1 NC_010610.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1700040 rplR 6231985 rplR Lactobacillus fermentum IFO 3956 50S ribosomal protein L18 YP_001844315.1 1699675 R 334390 CDS YP_001844316.1 184155976 6231986 complement(1700085..1700621) 1 NC_010610.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1700621 rplF 6231986 rplF Lactobacillus fermentum IFO 3956 50S ribosomal protein L6 YP_001844316.1 1700085 R 334390 CDS YP_001844317.1 184155977 6231987 complement(1700650..1701048) 1 NC_010610.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1701048 rpsH 6231987 rpsH Lactobacillus fermentum IFO 3956 30S ribosomal protein S8 YP_001844317.1 1700650 R 334390 CDS YP_001844318.1 184155978 6231988 complement(1701081..1701266) 1 NC_010610.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1701266 rpsN 6231988 rpsN Lactobacillus fermentum IFO 3956 30S ribosomal protein S14 YP_001844318.1 1701081 R 334390 CDS YP_001844319.1 184155979 6231989 complement(1701283..1701825) 1 NC_010610.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1701825 rplE 6231989 rplE Lactobacillus fermentum IFO 3956 50S ribosomal protein L5 YP_001844319.1 1701283 R 334390 CDS YP_001844320.1 184155980 6231990 complement(1701855..1702163) 1 NC_010610.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1702163 rplX 6231990 rplX Lactobacillus fermentum IFO 3956 50S ribosomal protein L24 YP_001844320.1 1701855 R 334390 CDS YP_001844321.1 184155981 6231991 complement(1702197..1702565) 1 NC_010610.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1702565 rplN 6231991 rplN Lactobacillus fermentum IFO 3956 50S ribosomal protein L14 YP_001844321.1 1702197 R 334390 CDS YP_001844322.1 184155982 6231992 complement(1702626..1702892) 1 NC_010610.1 30S ribosomal protein S17 1702892 6231992 LAF_1506 Lactobacillus fermentum IFO 3956 30S ribosomal protein S17 YP_001844322.1 1702626 R 334390 CDS YP_001844323.1 184155983 6231993 complement(1702915..1703121) 1 NC_010610.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1703121 6231993 LAF_1507 Lactobacillus fermentum IFO 3956 50S ribosomal protein L29 YP_001844323.1 1702915 R 334390 CDS YP_001844324.1 184155984 6231994 complement(1703111..1703545) 1 NC_010610.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1703545 rplP 6231994 rplP Lactobacillus fermentum IFO 3956 50S ribosomal protein L16 YP_001844324.1 1703111 R 334390 CDS YP_001844325.1 184155985 6231995 complement(1703549..1704208) 1 NC_010610.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1704208 rpsC 6231995 rpsC Lactobacillus fermentum IFO 3956 30S ribosomal protein S3 YP_001844325.1 1703549 R 334390 CDS YP_001844326.1 184155986 6231996 complement(1704221..1704568) 1 NC_010610.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1704568 rplV 6231996 rplV Lactobacillus fermentum IFO 3956 50S ribosomal protein L22 YP_001844326.1 1704221 R 334390 CDS YP_001844327.1 184155987 6231997 complement(1704585..1704866) 1 NC_010610.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1704866 rpsS 6231997 rpsS Lactobacillus fermentum IFO 3956 30S ribosomal protein S19 YP_001844327.1 1704585 R 334390 CDS YP_001844328.1 184155988 6231998 complement(1704907..1705752) 1 NC_010610.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1705752 rplB 6231998 rplB Lactobacillus fermentum IFO 3956 50S ribosomal protein L2 YP_001844328.1 1704907 R 334390 CDS YP_001844329.1 184155989 6231999 complement(1705778..1706071) 1 NC_010610.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1706071 rplW 6231999 rplW Lactobacillus fermentum IFO 3956 50S ribosomal protein L23 YP_001844329.1 1705778 R 334390 CDS YP_001844330.1 184155990 6232000 complement(1706071..1706694) 1 NC_010610.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1706694 rplD 6232000 rplD Lactobacillus fermentum IFO 3956 50S ribosomal protein L4 YP_001844330.1 1706071 R 334390 CDS YP_001844331.1 184155991 6232001 complement(1706713..1707375) 1 NC_010610.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1707375 rplC 6232001 rplC Lactobacillus fermentum IFO 3956 50S ribosomal protein L3 YP_001844331.1 1706713 R 334390 CDS YP_001844332.1 184155992 6232002 complement(1707425..1707733) 1 NC_010610.1 30S ribosomal protein S10 1707733 6232002 LAF_1516 Lactobacillus fermentum IFO 3956 30S ribosomal protein S10 YP_001844332.1 1707425 R 334390 CDS YP_001844333.1 184155993 6232003 complement(1708122..1710206) 1 NC_010610.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1710206 6232003 LAF_1517 Lactobacillus fermentum IFO 3956 elongation factor G YP_001844333.1 1708122 R 334390 CDS YP_001844334.1 184155994 6232004 complement(1710329..1710799) 1 NC_010610.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1710799 6232004 LAF_1518 Lactobacillus fermentum IFO 3956 30S ribosomal protein S7 YP_001844334.1 1710329 R 334390 CDS YP_001844335.1 184155995 6232005 complement(1710824..1711237) 1 NC_010610.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1711237 rpsL 6232005 rpsL Lactobacillus fermentum IFO 3956 30S ribosomal protein S12 YP_001844335.1 1710824 R 334390 CDS YP_001844336.1 184155996 6232006 complement(1712343..1713518) 1 NC_010610.1 hypothetical protein 1713518 6232006 LAF_1520 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844336.1 1712343 R 334390 CDS YP_001844337.1 184155997 6232007 1713673..1714401 1 NC_010610.1 glutamine amidotransferase 1714401 6232007 LAF_1521 Lactobacillus fermentum IFO 3956 glutamine amidotransferase YP_001844337.1 1713673 D 334390 CDS YP_001844338.1 184155998 6232008 complement(1714469..1718116) 1 NC_010610.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1718116 6232008 LAF_1522 Lactobacillus fermentum IFO 3956 DNA-directed RNA polymerase subunit beta' YP_001844338.1 1714469 R 334390 CDS YP_001844339.1 184155999 6232009 complement(1718154..1721735) 1 NC_010610.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1721735 rpoB 6232009 rpoB Lactobacillus fermentum IFO 3956 DNA-directed RNA polymerase subunit beta YP_001844339.1 1718154 R 334390 CDS YP_001844340.1 184156000 6232010 complement(1721951..1722544) 1 NC_010610.1 transcriptional regulator 1722544 6232010 LAF_1525 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844340.1 1721951 R 334390 CDS YP_001844341.1 184156001 6232012 1722435..1722602 1 NC_010610.1 hypothetical protein 1722602 6232012 LAF_1524 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844341.1 1722435 D 334390 CDS YP_001844342.1 184156002 6232011 complement(1722730..1725234) 1 NC_010610.1 ATP-dependent Clp protease ATP-binding subunit 1725234 6232011 LAF_1526 Lactobacillus fermentum IFO 3956 ATP-dependent Clp protease ATP-binding subunit YP_001844342.1 1722730 R 334390 CDS YP_001844343.1 184156003 6232013 complement(1725253..1725723) 1 NC_010610.1 transcriptional regulator 1725723 6232013 LAF_1527 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844343.1 1725253 R 334390 CDS YP_001844344.1 184156004 6232014 complement(1725863..1726882) 1 NC_010610.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase 1726882 6232014 LAF_1528 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001844344.1 1725863 R 334390 CDS YP_001844345.1 184156005 6232015 1727120..1728136 1 NC_010610.1 transposase 1728136 6232015 LAF_1529 Lactobacillus fermentum IFO 3956 transposase YP_001844345.1 1727120 D 334390 CDS YP_001844346.1 184156006 6232016 1728357..1729073 1 NC_010610.1 hypothetical protein 1729073 6232016 LAF_1530 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844346.1 1728357 D 334390 CDS YP_001844347.1 184156007 6232017 complement(1729135..1729809) 1 NC_010610.1 hypothetical protein 1729809 6232017 LAF_1531 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844347.1 1729135 R 334390 CDS YP_001844348.1 184156008 6232018 complement(1730559..1731014) 1 NC_010610.1 hypothetical protein 1731014 6232018 LAF_1532 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844348.1 1730559 R 334390 CDS YP_001844349.1 184156009 6232019 complement(1731083..1731418) 1 NC_010610.1 hypothetical protein 1731418 6232019 LAF_1533 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844349.1 1731083 R 334390 CDS YP_001844350.1 184156010 6232020 1731908..1732738 1 NC_010610.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1732738 6232020 LAF_1534 Lactobacillus fermentum IFO 3956 undecaprenyl pyrophosphate phosphatase YP_001844350.1 1731908 D 334390 CDS YP_001844351.1 184156011 6233572 complement(1734312..1734953) 1 NC_010610.1 deoxyguanosine kinase 1734953 6233572 LAF_1535 Lactobacillus fermentum IFO 3956 deoxyguanosine kinase YP_001844351.1 1734312 R 334390 CDS YP_001844352.1 184156012 6232022 complement(1735084..1736574) 1 NC_010610.1 lysine transport protein 1736574 6232022 LAF_1536 Lactobacillus fermentum IFO 3956 lysine transport protein YP_001844352.1 1735084 R 334390 CDS YP_001844353.1 184156013 6232023 complement(1736884..1737351) 1 NC_010610.1 hypothetical protein 1737351 6232023 LAF_1537 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844353.1 1736884 R 334390 CDS YP_001844354.1 184156014 6231780 1737396..1738205 1 NC_010610.1 esterase 1738205 6231780 LAF_1538 Lactobacillus fermentum IFO 3956 esterase YP_001844354.1 1737396 D 334390 CDS YP_001844355.1 184156015 6233189 complement(1738424..1739092) 1 NC_010610.1 phosphatase 1739092 6233189 LAF_1539 Lactobacillus fermentum IFO 3956 phosphatase YP_001844355.1 1738424 R 334390 CDS YP_001844356.1 184156016 6233190 complement(1739147..1739641) 1 NC_010610.1 hypothetical protein 1739641 6233190 LAF_1540 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844356.1 1739147 R 334390 CDS YP_001844357.1 184156017 6233191 complement(1739645..1740394) 1 NC_010610.1 hypothetical protein 1740394 6233191 LAF_1541 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844357.1 1739645 R 334390 CDS YP_001844358.1 184156018 6233192 complement(1740566..1740766) 1 NC_010610.1 cold shock protein 1740766 6233192 LAF_1542 Lactobacillus fermentum IFO 3956 cold shock protein YP_001844358.1 1740566 R 334390 CDS YP_001844359.1 184156019 6233193 complement(1740915..1741574) 1 NC_010610.1 metal-dependent regulator 1741574 6233193 LAF_1543 Lactobacillus fermentum IFO 3956 metal-dependent regulator YP_001844359.1 1740915 R 334390 CDS YP_001844360.1 184156020 6233194 1741727..1742632 1 NC_010610.1 cation efflux system protein 1742632 6233194 LAF_1544 Lactobacillus fermentum IFO 3956 cation efflux system protein YP_001844360.1 1741727 D 334390 CDS YP_001844361.1 184156021 6233195 complement(1742787..1743482) 1 NC_010610.1 hypothetical protein 1743482 6233195 LAF_1545 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844361.1 1742787 R 334390 CDS YP_001844362.1 184156022 6233196 complement(1743500..1744183) 1 NC_010610.1 hypothetical protein 1744183 6233196 LAF_1546 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844362.1 1743500 R 334390 CDS YP_001844363.1 184156023 6233197 complement(1744332..1744808) 1 NC_010610.1 hypothetical protein 1744808 6233197 LAF_1547 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844363.1 1744332 R 334390 CDS YP_001844364.1 184156024 6233198 complement(1745485..1746762) 1 NC_010610.1 hypothetical protein 1746762 6233198 LAF_1548 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844364.1 1745485 R 334390 CDS YP_001844365.1 184156025 6233199 complement(1746870..1748702) 1 NC_010610.1 hypothetical protein 1748702 6233199 LAF_1549 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844365.1 1746870 R 334390 CDS YP_001844366.1 184156026 6233200 complement(1748974..1749339) 1 NC_010610.1 hypothetical protein 1749339 6233200 LAF_1550 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844366.1 1748974 R 334390 CDS YP_001844367.1 184156027 6233201 complement(1749410..1749937) 1 NC_010610.1 transcriptional regulator 1749937 6233201 LAF_1551 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844367.1 1749410 R 334390 CDS YP_001844368.1 184156028 6233202 1749995..1751479 1 NC_010610.1 multidrug transport protein 1751479 6233202 LAF_1552 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001844368.1 1749995 D 334390 CDS YP_001844369.1 184156029 6233203 1751483..1752187 1 NC_010610.1 hypothetical protein 1752187 6233203 LAF_1553 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844369.1 1751483 D 334390 CDS YP_001844370.1 184156030 6233204 complement(1752278..1753702) 1 NC_010610.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 1753702 6233204 LAF_1554 Lactobacillus fermentum IFO 3956 L-arabinose isomerase YP_001844370.1 1752278 R 334390 CDS YP_001844371.1 184156031 6233205 complement(1753834..1755201) 1 NC_010610.1 sugar transport protein 1755201 6233205 LAF_1555 Lactobacillus fermentum IFO 3956 sugar transport protein YP_001844371.1 1753834 R 334390 CDS YP_001844372.1 184156032 6233206 complement(1755418..1756503) 1 NC_010610.1 transcriptional repressor 1756503 6233206 LAF_1556 Lactobacillus fermentum IFO 3956 transcriptional repressor YP_001844372.1 1755418 R 334390 CDS YP_001844373.1 184156033 6233207 complement(1756662..1757390) 1 NC_010610.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 1757390 araD 6233207 araD Lactobacillus fermentum IFO 3956 L-ribulose-5-phosphate 4-epimerase YP_001844373.1 1756662 R 334390 CDS YP_001844374.1 184156034 6233208 complement(1757401..1759005) 1 NC_010610.1 sugar kinase 1759005 6233208 LAF_1558 Lactobacillus fermentum IFO 3956 sugar kinase YP_001844374.1 1757401 R 334390 CDS YP_001844375.1 184156035 6233209 complement(1759236..1760120) 1 NC_010610.1 pseudouridylate synthase 1760120 6233209 LAF_1559 Lactobacillus fermentum IFO 3956 pseudouridylate synthase YP_001844375.1 1759236 R 334390 CDS YP_001844376.1 184156036 6233573 1760394..1762982 1 NC_010610.1 hypothetical protein 1762982 6233573 LAF_1560 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844376.1 1760394 D 334390 CDS YP_001844377.1 184156037 6233211 complement(1763257..1763841) 1 NC_010610.1 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate biosynthesis protein 1763841 6233211 LAF_1561 Lactobacillus fermentum IFO 3956 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate biosynthesis protein YP_001844377.1 1763257 R 334390 CDS YP_001844378.1 184156038 6233212 complement(1763857..1764855) 1 NC_010610.1 hypothetical protein 1764855 6233212 LAF_1562 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844378.1 1763857 R 334390 CDS YP_001844379.1 184156039 6233213 complement(1765091..1765753) 1 NC_010610.1 hypothetical protein 1765753 6233213 LAF_1563 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844379.1 1765091 R 334390 CDS YP_001844380.1 184156040 6233214 complement(1765771..1767108) 1 NC_010610.1 hypothetical protein 1767108 6233214 LAF_1564 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844380.1 1765771 R 334390 CDS YP_001844381.1 184156041 6233215 complement(1767183..1768076) 1 NC_010610.1 malolactic regulator 1768076 6233215 LAF_1565 Lactobacillus fermentum IFO 3956 malolactic regulator YP_001844381.1 1767183 R 334390 CDS YP_001844382.1 184156042 6233216 complement(1768587..1769387) 1 NC_010610.1 transposase 1769387 6233216 LAF_1566 Lactobacillus fermentum IFO 3956 transposase YP_001844382.1 1768587 R 334390 CDS YP_001844383.1 184156043 6233217 1771138..1772106 1 NC_010610.1 transposase 1772106 6233217 LAF_1567 Lactobacillus fermentum IFO 3956 transposase YP_001844383.1 1771138 D 334390 CDS YP_001844384.1 184156044 6233218 complement(1772693..1773538) 1 NC_010610.1 transposase 1773538 6233218 LAF_1568 Lactobacillus fermentum IFO 3956 transposase YP_001844384.1 1772693 R 334390 CDS YP_001844385.1 184156045 6233219 complement(1773535..1774149) 1 NC_010610.1 transposase 1774149 6233219 LAF_1569 Lactobacillus fermentum IFO 3956 transposase YP_001844385.1 1773535 R 334390 CDS YP_001844386.1 184156046 6233220 complement(1775153..1776031) 1 NC_010610.1 transposase 1776031 6233220 LAF_1570 Lactobacillus fermentum IFO 3956 transposase YP_001844386.1 1775153 R 334390 CDS YP_001844387.1 184156047 6233221 complement(1776055..1776357) 1 NC_010610.1 hypothetical protein 1776357 6233221 LAF_1571 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844387.1 1776055 R 334390 CDS YP_001844388.1 184156048 6233222 complement(1777469..1778485) 1 NC_010610.1 transposase 1778485 6233222 LAF_1572 Lactobacillus fermentum IFO 3956 transposase YP_001844388.1 1777469 R 334390 CDS YP_001844389.1 184156049 6233223 complement(1778874..1779587) 1 NC_010610.1 hypothetical protein 1779587 6233223 LAF_1573 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844389.1 1778874 R 334390 CDS YP_001844390.1 184156050 6233224 complement(1781492..1782430) 1 NC_010610.1 transposase 1782430 6233224 LAF_1574 Lactobacillus fermentum IFO 3956 transposase YP_001844390.1 1781492 R 334390 CDS YP_001844391.1 184156051 6233225 1783416..1784108 1 NC_010610.1 hypothetical protein 1784108 6233225 LAF_1575 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844391.1 1783416 D 334390 CDS YP_001844392.1 184156052 6233226 1785012..1785947 1 NC_010610.1 transposase 1785947 6233226 LAF_1576 Lactobacillus fermentum IFO 3956 transposase YP_001844392.1 1785012 D 334390 CDS YP_001844393.1 184156053 6233227 complement(1786088..1786675) 1 NC_010610.1 peptidyl-prolyl cis-trans isomerase 1786675 6233227 LAF_1577 Lactobacillus fermentum IFO 3956 peptidyl-prolyl cis-trans isomerase YP_001844393.1 1786088 R 334390 CDS YP_001844394.1 184156054 6233228 complement(1786896..1788854) 1 NC_010610.1 PTS system sucrose-specific IIABC component 1788854 6233228 LAF_1578 Lactobacillus fermentum IFO 3956 PTS system sucrose-specific IIABC component YP_001844394.1 1786896 R 334390 CDS YP_001844395.1 184156055 6233229 complement(1789003..1790046) 1 NC_010610.1 alcohol dehydrogenase 1790046 6233229 LAF_1579 Lactobacillus fermentum IFO 3956 alcohol dehydrogenase YP_001844395.1 1789003 R 334390 CDS YP_001844396.1 184156056 6233230 1790587..1792059 1 NC_010610.1 sucrose-6-phosphate hydrolase 1792059 6233230 LAF_1580 Lactobacillus fermentum IFO 3956 sucrose-6-phosphate hydrolase YP_001844396.1 1790587 D 334390 CDS YP_001844397.1 184156057 6233231 1792066..1793448 1 NC_010610.1 hypothetical protein 1793448 6233231 LAF_1581 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844397.1 1792066 D 334390 CDS YP_001844398.1 184156058 6233232 complement(1793728..1794636) 1 NC_010610.1 transcriptional regulator 1794636 6233232 LAF_1582 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844398.1 1793728 R 334390 CDS YP_001844399.1 184156059 6233233 complement(1794673..1795560) 1 NC_010610.1 hypothetical protein 1795560 6233233 LAF_1583 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844399.1 1794673 R 334390 CDS YP_001844400.1 184156060 6233234 1795613..1796218 1 NC_010610.1 hypothetical protein 1796218 6233234 LAF_1584 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844400.1 1795613 D 334390 CDS YP_001844401.1 184156061 6233235 complement(1796465..1797961) 1 NC_010610.1 amino acid transporter 1797961 6233235 LAF_1585 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844401.1 1796465 R 334390 CDS YP_001844402.1 184156062 6233236 1798379..1799299 1 NC_010610.1 hypothetical protein 1799299 6233236 LAF_1586 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844402.1 1798379 D 334390 CDS YP_001844403.1 184156063 6233237 complement(1799644..1800897) 1 NC_010610.1 D-alanyl-D-alanine carboxypeptidase 1800897 6233237 LAF_1587 Lactobacillus fermentum IFO 3956 D-alanyl-D-alanine carboxypeptidase YP_001844403.1 1799644 R 334390 CDS YP_001844404.1 184156064 6233238 complement(1801038..1801586) 1 NC_010610.1 hypothetical protein 1801586 6233238 LAF_1588 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844404.1 1801038 R 334390 CDS YP_001844405.1 184156065 6233239 1801766..1802797 1 NC_010610.1 hypothetical protein 1802797 6233239 LAF_1589 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844405.1 1801766 D 334390 CDS YP_001844406.1 184156066 6233240 complement(1802890..1803477) 1 NC_010610.1 hypothetical protein 1803477 6233240 LAF_1590 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844406.1 1802890 R 334390 CDS YP_001844407.1 184156067 6233241 complement(1803474..1803785) 1 NC_010610.1 hypothetical protein 1803785 6233241 LAF_1591 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844407.1 1803474 R 334390 CDS YP_001844408.1 184156068 6233242 complement(1803794..1806790) 1 NC_010610.1 hypothetical protein 1806790 6233242 LAF_1592 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844408.1 1803794 R 334390 CDS YP_001844409.1 184156069 6233243 complement(1806803..1807219) 1 NC_010610.1 hypothetical protein 1807219 6233243 LAF_1593 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844409.1 1806803 R 334390 CDS YP_001844410.1 184156070 6233244 complement(1807272..1807817) 1 NC_010610.1 transcriptional regulator 1807817 6233244 LAF_1594 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844410.1 1807272 R 334390 CDS YP_001844411.1 184156071 6233245 1807958..1809406 1 NC_010610.1 multidrug transport protein 1809406 6233245 LAF_1595 Lactobacillus fermentum IFO 3956 multidrug transport protein YP_001844411.1 1807958 D 334390 CDS YP_001844412.1 184156072 6233246 1809408..1810166 1 NC_010610.1 hypothetical protein 1810166 6233246 LAF_1596 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844412.1 1809408 D 334390 CDS YP_001844413.1 184156073 6233247 complement(1810152..1810382) 1 NC_010610.1 hypothetical protein 1810382 6233247 LAF_1597 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844413.1 1810152 R 334390 CDS YP_001844414.1 184156074 6233248 1810692..1811420 1 NC_010610.1 hypothetical protein 1811420 6233248 LAF_1598 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844414.1 1810692 D 334390 CDS YP_001844415.1 184156075 6233249 1811502..1811756 1 NC_010610.1 hypothetical protein 1811756 6233249 LAF_1599 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844415.1 1811502 D 334390 CDS YP_001844416.1 184156076 6233250 complement(1812147..1812623) 1 NC_010610.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1812623 6233250 LAF_1600 Lactobacillus fermentum IFO 3956 S-ribosylhomocysteinase YP_001844416.1 1812147 R 334390 CDS YP_001844417.1 184156077 6233251 complement(1812684..1813799) 1 NC_010610.1 methionine synthase 1813799 6233251 LAF_1601 Lactobacillus fermentum IFO 3956 methionine synthase YP_001844417.1 1812684 R 334390 CDS YP_001844418.1 184156078 6233252 complement(1814178..1815188) 1 NC_010610.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1815188 6233252 LAF_1602 Lactobacillus fermentum IFO 3956 asparagine synthetase AsnA YP_001844418.1 1814178 R 334390 CDS YP_001844419.1 184156079 6233253 1815382..1815978 1 NC_010610.1 hypothetical protein 1815978 6233253 LAF_1603 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844419.1 1815382 D 334390 CDS YP_001844420.1 184156080 6233254 1815997..1816518 1 NC_010610.1 acetyltransferase 1816518 6233254 LAF_1604 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001844420.1 1815997 D 334390 CDS YP_001844421.1 184156081 6233255 1816815..1818335 1 NC_010610.1 UV-damage repair protein 1818335 6233255 LAF_1605 Lactobacillus fermentum IFO 3956 UV-damage repair protein YP_001844421.1 1816815 D 334390 CDS YP_001844422.1 184156082 6233256 1818332..1818790 1 NC_010610.1 hypothetical protein 1818790 6233256 LAF_1606 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844422.1 1818332 D 334390 CDS YP_001844423.1 184156083 6233257 complement(1819275..1819697) 1 NC_010610.1 transcriptional regulator 1819697 6233257 LAF_1607 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844423.1 1819275 R 334390 CDS YP_001844424.1 184156084 6233258 1819974..1820708 1 NC_010610.1 hypothetical protein 1820708 6233258 LAF_1608 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844424.1 1819974 D 334390 CDS YP_001844425.1 184156085 6233259 1820709..1821725 1 NC_010610.1 hypothetical protein 1821725 6233259 LAF_1609 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844425.1 1820709 D 334390 CDS YP_001844426.1 184156086 6233260 1821728..1822141 1 NC_010610.1 biotin carboxyl carrier protein 1822141 6233260 LAF_1610 Lactobacillus fermentum IFO 3956 biotin carboxyl carrier protein YP_001844426.1 1821728 D 334390 CDS YP_001844427.1 184156087 6233261 1822113..1823501 1 NC_010610.1 biotin carboxylase 1823501 6233261 LAF_1611 Lactobacillus fermentum IFO 3956 biotin carboxylase YP_001844427.1 1822113 D 334390 CDS YP_001844428.1 184156088 6233262 1823488..1824237 1 NC_010610.1 hypothetical protein 1824237 6233262 LAF_1612 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844428.1 1823488 D 334390 CDS YP_001844429.1 184156089 6233263 1824250..1825461 1 NC_010610.1 hypothetical protein 1825461 6233263 LAF_1613 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844429.1 1824250 D 334390 CDS YP_001844430.1 184156090 6233264 complement(1825673..1826842) 1 NC_010610.1 transpot protein 1826842 6233264 LAF_1614 Lactobacillus fermentum IFO 3956 transpot protein YP_001844430.1 1825673 R 334390 CDS YP_001844431.1 184156091 6233265 complement(1827422..1828753) 1 NC_010610.1 glutathione reductase 1828753 6233265 LAF_1615 Lactobacillus fermentum IFO 3956 glutathione reductase YP_001844431.1 1827422 R 334390 CDS YP_001844432.1 184156092 6233266 complement(1828907..1829221) 1 NC_010610.1 thioredoxin 1829221 6233266 LAF_1616 Lactobacillus fermentum IFO 3956 thioredoxin YP_001844432.1 1828907 R 334390 CDS YP_001844433.1 184156093 6233267 1829369..1830295 1 NC_010610.1 transport protein 1830295 6233267 LAF_1617 Lactobacillus fermentum IFO 3956 transport protein YP_001844433.1 1829369 D 334390 CDS YP_001844434.1 184156094 6233268 complement(1830779..1831942) 1 NC_010610.1 transposase 1831942 6233268 LAF_1618 Lactobacillus fermentum IFO 3956 transposase YP_001844434.1 1830779 R 334390 CDS YP_001844435.1 184156095 6232574 complement(1832670..1834022) 1 NC_010610.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 1834022 6232574 LAF_1619 Lactobacillus fermentum IFO 3956 4-aminobutyrate aminotransferase YP_001844435.1 1832670 R 334390 CDS YP_001844436.1 184156096 6232575 complement(1834003..1835457) 1 NC_010610.1 amino acid transporter 1835457 6232575 LAF_1620 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844436.1 1834003 R 334390 CDS YP_001844437.1 184156097 6232576 complement(1835762..1836235) 1 NC_010610.1 hypothetical protein 1836235 6232576 LAF_1621 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844437.1 1835762 R 334390 CDS YP_001844438.1 184156098 6232698 complement(1836381..1837211) 1 NC_010610.1 hypothetical protein 1837211 6232698 LAF_1622 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844438.1 1836381 R 334390 CDS YP_001844439.1 184156099 6232699 complement(1837556..1837690) 1 NC_010610.1 hypothetical protein 1837690 6232699 LAF_1623 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844439.1 1837556 R 334390 CDS YP_001844440.1 184156100 6232700 complement(1837902..1839284) 1 NC_010610.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1839284 6232700 LAF_1624 Lactobacillus fermentum IFO 3956 argininosuccinate lyase YP_001844440.1 1837902 R 334390 CDS YP_001844441.1 184156101 6232701 complement(1839284..1840522) 1 NC_010610.1 argininosuccinate synthase 1840522 6232701 LAF_1625 Lactobacillus fermentum IFO 3956 argininosuccinate synthase YP_001844441.1 1839284 R 334390 CDS YP_001844442.1 184156102 6232702 complement(1840782..1842659) 1 NC_010610.1 hypothetical protein 1842659 6232702 LAF_1626 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844442.1 1840782 R 334390 CDS YP_001844443.1 184156103 6232703 complement(1842652..1843224) 1 NC_010610.1 hypothetical protein 1843224 6232703 LAF_1627 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844443.1 1842652 R 334390 CDS YP_001844444.1 184156104 6232704 1843690..1844643 1 NC_010610.1 ABC transporter permease 1844643 6232704 LAF_1628 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844444.1 1843690 D 334390 CDS YP_001844445.1 184156105 6232705 complement(1844670..1845188) 1 NC_010610.1 hypothetical protein 1845188 6232705 LAF_1629 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844445.1 1844670 R 334390 CDS YP_001844446.1 184156106 6232706 complement(1845355..1847340) 1 NC_010610.1 ABC transporter ATP-binding protein/permease 1847340 6232706 LAF_1630 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein/permease YP_001844446.1 1845355 R 334390 CDS YP_001844447.1 184156107 6232707 1847397..1848095 1 NC_010610.1 hypothetical protein 1848095 6232707 LAF_1631 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844447.1 1847397 D 334390 CDS YP_001844448.1 184156108 6232708 complement(1848342..1849622) 1 NC_010610.1 1-deoxyxylulose-5-phosphate synthase 1849622 6232708 LAF_1632 Lactobacillus fermentum IFO 3956 1-deoxyxylulose-5-phosphate synthase YP_001844448.1 1848342 R 334390 CDS YP_001844449.1 184156109 6232709 complement(1849932..1850954) 1 NC_010610.1 transposase 1850954 6232709 LAF_1633 Lactobacillus fermentum IFO 3956 transposase YP_001844449.1 1849932 R 334390 CDS YP_001844450.1 184156110 6232710 1851256..1851711 1 NC_010610.1 transposase 1851711 6232710 LAF_1634 Lactobacillus fermentum IFO 3956 transposase YP_001844450.1 1851256 D 334390 CDS YP_001844451.1 184156111 6232711 complement(1851774..1852112) 1 NC_010610.1 hypothetical protein 1852112 6232711 LAF_1635 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844451.1 1851774 R 334390 CDS YP_001844452.1 184156112 6232712 1852843..1852986 1 NC_010610.1 hypothetical protein 1852986 6232712 LAF_1636 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844452.1 1852843 D 334390 CDS YP_001844453.1 184156113 6232713 complement(1853036..1853986) 1 NC_010610.1 hypothetical protein 1853986 6232713 LAF_1637 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844453.1 1853036 R 334390 CDS YP_001844454.1 184156114 6232714 complement(1854055..1854375) 1 NC_010610.1 hypothetical protein 1854375 6232714 LAF_1638 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844454.1 1854055 R 334390 CDS YP_001844455.1 184156115 6232715 complement(1854423..1854995) 1 NC_010610.1 hypothetical protein 1854995 6232715 LAF_1639 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844455.1 1854423 R 334390 CDS YP_001844456.1 184156116 6232716 complement(1855032..1855181) 1 NC_010610.1 hypothetical protein 1855181 6232716 LAF_1640 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844456.1 1855032 R 334390 CDS YP_001844457.1 184156117 6232717 complement(1855206..1855910) 1 NC_010610.1 hypothetical protein 1855910 6232717 LAF_1641 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844457.1 1855206 R 334390 CDS YP_001844458.1 184156118 6232718 1856441..1859206 1 NC_010610.1 cation-transporting ATPase 1859206 6232718 LAF_1642 Lactobacillus fermentum IFO 3956 cation-transporting ATPase YP_001844458.1 1856441 D 334390 CDS YP_001844459.1 184156119 6232719 complement(1859441..1861783) 1 NC_010610.1 nitric oxide reductase 1861783 6232719 LAF_1643 Lactobacillus fermentum IFO 3956 nitric oxide reductase YP_001844459.1 1859441 R 334390 CDS YP_001844460.1 184156120 6232720 1864309..1864920 1 NC_010610.1 hypothetical protein 1864920 6232720 LAF_1644 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844460.1 1864309 D 334390 CDS YP_001844461.1 184156121 6232721 complement(1866123..1867343) 1 NC_010610.1 transposase 1867343 6232721 LAF_1645 Lactobacillus fermentum IFO 3956 transposase YP_001844461.1 1866123 R 334390 CDS YP_001844462.1 184156122 6232722 complement(1868525..1869448) 1 NC_010610.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1869448 6232722 LAF_1646 Lactobacillus fermentum IFO 3956 pantothenate kinase YP_001844462.1 1868525 R 334390 CDS YP_001844463.1 184156123 6232723 1869559..1870110 1 NC_010610.1 hypothetical protein 1870110 6232723 LAF_1647 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844463.1 1869559 D 334390 CDS YP_001844464.1 184156124 6232724 complement(1870330..1871079) 1 NC_010610.1 short chain dehydrogenase 1871079 6232724 LAF_1648 Lactobacillus fermentum IFO 3956 short chain dehydrogenase YP_001844464.1 1870330 R 334390 CDS YP_001844465.1 184156125 6232725 complement(1871368..1873461) 1 NC_010610.1 phosphoglycerol transferase 1873461 6232725 LAF_1649 Lactobacillus fermentum IFO 3956 phosphoglycerol transferase YP_001844465.1 1871368 R 334390 CDS YP_001844466.1 184156126 6232726 1873653..1874600 1 NC_010610.1 transport protein 1874600 6232726 LAF_1650 Lactobacillus fermentum IFO 3956 transport protein YP_001844466.1 1873653 D 334390 CDS YP_001844467.1 184156127 6232727 complement(1874693..1876987) 1 NC_010610.1 DNA helicase 1876987 6232727 LAF_1651 Lactobacillus fermentum IFO 3956 DNA helicase YP_001844467.1 1874693 R 334390 CDS YP_001844468.1 184156128 6232728 1877170..1877826 1 NC_010610.1 hypothetical protein 1877826 6232728 LAF_1652 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844468.1 1877170 D 334390 CDS YP_001844469.1 184156129 6232729 1877951..1878595 1 NC_010610.1 phosphoglycerate mutase 1878595 6232729 LAF_1653 Lactobacillus fermentum IFO 3956 phosphoglycerate mutase YP_001844469.1 1877951 D 334390 CDS YP_001844470.1 184156130 6232730 1878617..1879894 1 NC_010610.1 GTPase 1879894 6232730 LAF_1654 Lactobacillus fermentum IFO 3956 GTPase YP_001844470.1 1878617 D 334390 CDS YP_001844471.1 184156131 6232731 1880116..1881225 1 NC_010610.1 N-acylamino acid racemase 1881225 6232731 LAF_1655 Lactobacillus fermentum IFO 3956 N-acylamino acid racemase YP_001844471.1 1880116 D 334390 CDS YP_001844472.1 184156132 6232732 complement(1881287..1882009) 1 NC_010610.1 nicotinamide mononucleotide transport protein 1882009 6232732 LAF_1656 Lactobacillus fermentum IFO 3956 nicotinamide mononucleotide transport protein YP_001844472.1 1881287 R 334390 CDS YP_001844473.1 184156133 6232733 complement(1882358..1883971) 1 NC_010610.1 amino acid transporter 1883971 6232733 LAF_1657 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844473.1 1882358 R 334390 CDS YP_001844474.1 184156134 6232577 complement(1884130..1884627) 1 NC_010610.1 acetyltransferase 1884627 6232577 LAF_1658 Lactobacillus fermentum IFO 3956 acetyltransferase YP_001844474.1 1884130 R 334390 CDS YP_001844475.1 184156135 6232578 complement(1884789..1885559) 1 NC_010610.1 transposase 1885559 6232578 LAF_1659 Lactobacillus fermentum IFO 3956 transposase YP_001844475.1 1884789 R 334390 CDS YP_001844476.1 184156136 6232579 complement(1885783..1888524) 1 NC_010610.1 hypothetical protein 1888524 6232579 LAF_1660 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844476.1 1885783 R 334390 CDS YP_001844477.1 184156137 6232862 complement(1888542..1889093) 1 NC_010610.1 hypothetical protein 1889093 6232862 LAF_1661 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844477.1 1888542 R 334390 CDS YP_001844478.1 184156138 6232863 1889304..1890347 1 NC_010610.1 aldose 1-epimerase 1890347 6232863 LAF_1662 Lactobacillus fermentum IFO 3956 aldose 1-epimerase YP_001844478.1 1889304 D 334390 CDS YP_001844479.1 184156139 6232864 complement(1890599..1891516) 1 NC_010610.1 hypothetical protein 1891516 6232864 LAF_1663 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844479.1 1890599 R 334390 CDS YP_001844480.1 184156140 6232865 complement(1891528..1892028) 1 NC_010610.1 hypothetical protein 1892028 6232865 LAF_1664 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844480.1 1891528 R 334390 CDS YP_001844481.1 184156141 6232866 complement(1892090..1892539) 1 NC_010610.1 metal uptake regulator 1892539 6232866 LAF_1665 Lactobacillus fermentum IFO 3956 metal uptake regulator YP_001844481.1 1892090 R 334390 CDS YP_001844482.1 184156142 6232867 complement(1892581..1893165) 1 NC_010610.1 guanylate kinase 1893165 6232867 LAF_1666 Lactobacillus fermentum IFO 3956 guanylate kinase YP_001844482.1 1892581 R 334390 CDS YP_001844483.1 184156143 6232868 complement(1893165..1893590) 1 NC_010610.1 hypothetical protein 1893590 6232868 LAF_1667 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844483.1 1893165 R 334390 CDS YP_001844484.1 184156144 6232869 1895558..1897954 1 NC_010610.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1897954 6232869 LAF_1668 Lactobacillus fermentum IFO 3956 x-prolyl-dipeptidyl aminopeptidase YP_001844484.1 1895558 D 334390 CDS YP_001844485.1 184156145 6232870 1898036..1898947 1 NC_010610.1 prolinase 1898947 6232870 LAF_1669 Lactobacillus fermentum IFO 3956 prolinase YP_001844485.1 1898036 D 334390 CDS YP_001844486.1 184156146 6232871 1898969..1899607 1 NC_010610.1 hypothetical protein 1899607 6232871 LAF_1670 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844486.1 1898969 D 334390 CDS YP_001844487.1 184156147 6232872 1899878..1901662 1 NC_010610.1 hypothetical protein 1901662 6232872 LAF_1671 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844487.1 1899878 D 334390 CDS YP_001844488.1 184156148 6232873 complement(1901890..1902840) 1 NC_010610.1 ribonucleoside-diphosphate reductase subunit beta 1902840 6232873 LAF_1672 Lactobacillus fermentum IFO 3956 ribonucleoside-diphosphate reductase subunit beta YP_001844488.1 1901890 R 334390 CDS YP_001844489.1 184156149 6232874 complement(1902850..1903770) 1 NC_010610.1 ribonucleoside-diphosphate reductase subunit beta 1903770 6232874 LAF_1673 Lactobacillus fermentum IFO 3956 ribonucleoside-diphosphate reductase subunit beta YP_001844489.1 1902850 R 334390 CDS YP_001844490.1 184156150 6232580 complement(1903781..1905946) 1 NC_010610.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1905946 6232580 LAF_1674 Lactobacillus fermentum IFO 3956 ribonucleotide-diphosphate reductase subunit alpha YP_001844490.1 1903781 R 334390 CDS YP_001844491.1 184156151 6232581 complement(1905943..1906404) 1 NC_010610.1 ribonucleotide reductase 1906404 6232581 LAF_1675 Lactobacillus fermentum IFO 3956 ribonucleotide reductase YP_001844491.1 1905943 R 334390 CDS YP_001844492.1 184156152 6232582 1906662..1907357 1 NC_010610.1 cell surface protein 1907357 6232582 LAF_1676 Lactobacillus fermentum IFO 3956 cell surface protein YP_001844492.1 1906662 D 334390 CDS YP_001844493.1 184156153 6232998 1907350..1907493 1 NC_010610.1 hypothetical protein 1907493 6232998 LAF_1677 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844493.1 1907350 D 334390 CDS YP_001844494.1 184156154 6232999 complement(1907712..1908872) 1 NC_010610.1 hypothetical protein 1908872 6232999 LAF_1678 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844494.1 1907712 R 334390 CDS YP_001844495.1 184156155 6233000 complement(1908875..1910419) 1 NC_010610.1 ABC transporter ATP-binding protein 1910419 6233000 LAF_1679 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844495.1 1908875 R 334390 CDS YP_001844496.1 184156156 6233001 1910978..1911970 1 NC_010610.1 ABC transporter substrate-binding protein 1911970 6233001 LAF_1680 Lactobacillus fermentum IFO 3956 ABC transporter substrate-binding protein YP_001844496.1 1910978 D 334390 CDS YP_001844497.1 184156157 6233002 1911970..1912869 1 NC_010610.1 ABC transporter permease 1912869 6233002 LAF_1681 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844497.1 1911970 D 334390 CDS YP_001844498.1 184156158 6233003 1912862..1913623 1 NC_010610.1 ABC transporter ATP-binding protein 1913623 6233003 LAF_1682 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844498.1 1912862 D 334390 CDS YP_001844499.1 184156159 6233004 complement(1914288..1915502) 1 NC_010610.1 ammonium transport protein 1915502 6233004 LAF_1683 Lactobacillus fermentum IFO 3956 ammonium transport protein YP_001844499.1 1914288 R 334390 CDS YP_001844500.1 184156160 6233005 1915739..1917058 1 NC_010610.1 hypothetical protein 1917058 6233005 LAF_1684 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844500.1 1915739 D 334390 CDS YP_001844501.1 184156161 6233006 complement(1917343..1918224) 1 NC_010610.1 fructokinase 1918224 6233006 LAF_1685 Lactobacillus fermentum IFO 3956 fructokinase YP_001844501.1 1917343 R 334390 CDS YP_001844502.1 184156162 6233007 complement(1918238..1919590) 1 NC_010610.1 glucose-6-phosphate isomerase 1919590 6233007 LAF_1686 Lactobacillus fermentum IFO 3956 glucose-6-phosphate isomerase YP_001844502.1 1918238 R 334390 CDS YP_001844503.1 184156163 6233008 complement(1919762..1920745) 1 NC_010610.1 operon repressor 1920745 6233008 LAF_1687 Lactobacillus fermentum IFO 3956 operon repressor YP_001844503.1 1919762 R 334390 CDS YP_001844504.1 184156164 6233009 complement(1920729..1921613) 1 NC_010610.1 3-hydroxyisobutyrate dehydrogenase 1921613 6233009 LAF_1688 Lactobacillus fermentum IFO 3956 3-hydroxyisobutyrate dehydrogenase YP_001844504.1 1920729 R 334390 CDS YP_001844505.1 184156165 6233010 complement(1921733..1922653) 1 NC_010610.1 ribokinase 1922653 6233010 LAF_1689 Lactobacillus fermentum IFO 3956 ribokinase YP_001844505.1 1921733 R 334390 CDS YP_001844506.1 184156166 6233011 complement(1922938..1923258) 1 NC_010610.1 thioredoxin 1923258 6233011 LAF_1690 Lactobacillus fermentum IFO 3956 thioredoxin YP_001844506.1 1922938 R 334390 CDS YP_001844507.1 184156167 6233012 complement(1923233..1924042) 1 NC_010610.1 hypothetical protein 1924042 6233012 LAF_1691 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844507.1 1923233 R 334390 CDS YP_001844508.1 184156168 6233013 complement(1924099..1924983) 1 NC_010610.1 pseudouridylate synthase 1924983 6233013 LAF_1692 Lactobacillus fermentum IFO 3956 pseudouridylate synthase YP_001844508.1 1924099 R 334390 CDS YP_001844509.1 184156169 6233014 1925076..1925996 1 NC_010610.1 magnesium transport protein 1925996 6233014 LAF_1693 Lactobacillus fermentum IFO 3956 magnesium transport protein YP_001844509.1 1925076 D 334390 CDS YP_001844510.1 184156170 6233015 1926219..1927550 1 NC_010610.1 xanthine-uracil transport protein 1927550 6233015 LAF_1694 Lactobacillus fermentum IFO 3956 xanthine-uracil transport protein YP_001844510.1 1926219 D 334390 CDS YP_001844511.1 184156171 6233016 complement(1927581..1928435) 1 NC_010610.1 hypothetical protein 1928435 6233016 LAF_1695 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844511.1 1927581 R 334390 CDS YP_001844512.1 184156172 6233017 complement(1928719..1929372) 1 NC_010610.1 phosphoglycerate mutase 1929372 6233017 LAF_1696 Lactobacillus fermentum IFO 3956 phosphoglycerate mutase YP_001844512.1 1928719 R 334390 CDS YP_001844513.1 184156173 6233018 1929596..1931725 1 NC_010610.1 alkaline phosphatase 1931725 6233018 LAF_1697 Lactobacillus fermentum IFO 3956 alkaline phosphatase YP_001844513.1 1929596 D 334390 CDS YP_001844514.1 184156174 6233019 1931895..1932557 1 NC_010610.1 hypothetical protein 1932557 6233019 LAF_1698 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844514.1 1931895 D 334390 CDS YP_001844515.1 184156175 6233020 complement(1932658..1933305) 1 NC_010610.1 transcriptional regulator 1933305 6233020 LAF_1699 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844515.1 1932658 R 334390 CDS YP_001844516.1 184156176 6233021 complement(1933283..1933831) 1 NC_010610.1 hypothetical protein 1933831 6233021 LAF_1700 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844516.1 1933283 R 334390 CDS YP_001844517.1 184156177 6233027 complement(1933831..1934061) 1 NC_010610.1 hypothetical protein 1934061 6233027 LAF_1701 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844517.1 1933831 R 334390 CDS YP_001844518.1 184156178 6233028 complement(1934123..1935976) 1 NC_010610.1 cation-transporting ATPase 1935976 6233028 LAF_1702 Lactobacillus fermentum IFO 3956 cation-transporting ATPase YP_001844518.1 1934123 R 334390 CDS YP_001844519.1 184156179 6233029 complement(1936170..1937162) 1 NC_010610.1 thioredoxin reductase 1937162 6233029 LAF_1703 Lactobacillus fermentum IFO 3956 thioredoxin reductase YP_001844519.1 1936170 R 334390 CDS YP_001844520.1 184156180 6233030 1937335..1938294 1 NC_010610.1 inosine-uridine nucleoside 1938294 6233030 LAF_1704 Lactobacillus fermentum IFO 3956 inosine-uridine nucleoside YP_001844520.1 1937335 D 334390 CDS YP_001844521.1 184156181 6233031 1938831..1939400 1 NC_010610.1 hypothetical protein 1939400 6233031 LAF_1705 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844521.1 1938831 D 334390 CDS YP_001844522.1 184156182 6233032 1939404..1940786 1 NC_010610.1 ABC transporter ATP-binding protein 1940786 6233032 LAF_1706 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844522.1 1939404 D 334390 CDS YP_001844523.1 184156183 6233033 1940776..1941429 1 NC_010610.1 ABC transporter permease 1941429 6233033 LAF_1707 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844523.1 1940776 D 334390 CDS YP_001844524.1 184156184 6233034 1941471..1941833 1 NC_010610.1 hypothetical protein 1941833 6233034 LAF_1708 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844524.1 1941471 D 334390 CDS YP_001844525.1 184156185 6233035 1941924..1943885 1 NC_010610.1 Na-H antiporter 1943885 6233035 LAF_1709 Lactobacillus fermentum IFO 3956 Na-H antiporter YP_001844525.1 1941924 D 334390 CDS YP_001844526.1 184156186 6233036 complement(1944303..1945316) 1 NC_010610.1 lipoate-protein ligase 1945316 6233036 LAF_1710 Lactobacillus fermentum IFO 3956 lipoate-protein ligase YP_001844526.1 1944303 R 334390 CDS YP_001844527.1 184156187 6233037 complement(1945328..1945918) 1 NC_010610.1 hypothetical protein 1945918 6233037 LAF_1711 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844527.1 1945328 R 334390 CDS YP_001844528.1 184156188 6233038 complement(1946124..1947086) 1 NC_010610.1 hypothetical protein 1947086 6233038 LAF_1712 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844528.1 1946124 R 334390 CDS YP_001844529.1 184156189 6233039 1947216..1947641 1 NC_010610.1 transcriptional regulator 1947641 6233039 LAF_1713 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844529.1 1947216 D 334390 CDS YP_001844530.1 184156190 6233040 1947638..1948489 1 NC_010610.1 hypothetical protein 1948489 6233040 LAF_1714 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844530.1 1947638 D 334390 CDS YP_001844531.1 184156191 6233041 complement(1948860..1949336) 1 NC_010610.1 hypothetical protein 1949336 6233041 LAF_1715 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844531.1 1948860 R 334390 CDS YP_001844532.1 184156192 6233042 complement(1949343..1949741) 1 NC_010610.1 hypothetical protein 1949741 6233042 LAF_1716 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844532.1 1949343 R 334390 CDS YP_001844533.1 184156193 6233043 1949858..1950310 1 NC_010610.1 hypothetical protein 1950310 6233043 LAF_1717 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844533.1 1949858 D 334390 CDS YP_001844534.1 184156194 6233044 1950337..1950687 1 NC_010610.1 hypothetical protein 1950687 6233044 LAF_1718 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844534.1 1950337 D 334390 CDS YP_001844535.1 184156195 6233045 1950867..1951685 1 NC_010610.1 hypothetical protein 1951685 6233045 LAF_1719 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844535.1 1950867 D 334390 CDS YP_001844536.1 184156196 6233046 complement(1951781..1953142) 1 NC_010610.1 glycerol-3-phosphate transport protein 1953142 6233046 LAF_1720 Lactobacillus fermentum IFO 3956 glycerol-3-phosphate transport protein YP_001844536.1 1951781 R 334390 CDS YP_001844537.1 184156197 6233047 complement(1953353..1955356) 1 NC_010610.1 transketolase 1955356 6233047 LAF_1721 Lactobacillus fermentum IFO 3956 transketolase YP_001844537.1 1953353 R 334390 CDS YP_001844538.1 184156198 6233048 complement(1955369..1956115) 1 NC_010610.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1956115 6233048 LAF_1722 Lactobacillus fermentum IFO 3956 translaldolase YP_001844538.1 1955369 R 334390 CDS YP_001844539.1 184156199 6233049 1956524..1957060 1 NC_010610.1 hypothetical protein 1957060 6233049 LAF_1723 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844539.1 1956524 D 334390 CDS YP_001844540.1 184156200 6233050 1957057..1957944 1 NC_010610.1 transposase 1957944 6233050 LAF_1724 Lactobacillus fermentum IFO 3956 transposase YP_001844540.1 1957057 D 334390 CDS YP_001844541.1 184156201 6233051 complement(1958006..1958686) 1 NC_010610.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1958686 6233051 LAF_1725 Lactobacillus fermentum IFO 3956 ribose-5-phosphate isomerase A YP_001844541.1 1958006 R 334390 CDS YP_001844542.1 184156202 6233052 complement(1960771..1962057) 1 NC_010610.1 transposase 1962057 6233052 LAF_1726 Lactobacillus fermentum IFO 3956 transposase YP_001844542.1 1960771 R 334390 CDS YP_001844543.1 184156203 6233053 1962276..1963124 1 NC_010610.1 transposase 1963124 6233053 LAF_1727 Lactobacillus fermentum IFO 3956 transposase YP_001844543.1 1962276 D 334390 CDS YP_001844544.1 184156204 6233054 complement(1963424..1964437) 1 NC_010610.1 nickel transport protein 1964437 6233054 LAF_1728 Lactobacillus fermentum IFO 3956 nickel transport protein YP_001844544.1 1963424 R 334390 CDS YP_001844545.1 184156205 6233055 complement(1964463..1965290) 1 NC_010610.1 hypothetical protein 1965290 6233055 LAF_1729 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844545.1 1964463 R 334390 CDS YP_001844546.1 184156206 6233056 complement(1965315..1966025) 1 NC_010610.1 glycerol uptake facilitator protein 1966025 6233056 LAF_1730 Lactobacillus fermentum IFO 3956 glycerol uptake facilitator protein YP_001844546.1 1965315 R 334390 CDS YP_001844547.1 184156207 6233057 complement(1966027..1967391) 1 NC_010610.1 hypothetical protein 1967391 6233057 LAF_1731 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844547.1 1966027 R 334390 CDS YP_001844548.1 184156208 6233058 complement(1967391..1968149) 1 NC_010610.1 hypothetical protein 1968149 6233058 LAF_1732 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844548.1 1967391 R 334390 CDS YP_001844549.1 184156209 6232583 complement(1968157..1969440) 1 NC_010610.1 hypothetical protein 1969440 6232583 LAF_1733 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844549.1 1968157 R 334390 CDS YP_001844550.1 184156210 6232584 1969681..1970352 1 NC_010610.1 transcriptional regulator 1970352 6232584 LAF_1734 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844550.1 1969681 D 334390 CDS YP_001844551.1 184156211 6233111 complement(1972532..1974253) 1 NC_010610.1 PTS system enzyme I 1974253 6233111 LAF_1735 Lactobacillus fermentum IFO 3956 PTS system enzyme I YP_001844551.1 1972532 R 334390 CDS YP_001844552.1 184156212 6233112 complement(1974441..1975769) 1 NC_010610.1 fucose transport protein 1975769 6233112 LAF_1736 Lactobacillus fermentum IFO 3956 fucose transport protein YP_001844552.1 1974441 R 334390 CDS YP_001844553.1 184156213 6233113 complement(1975784..1976179) 1 NC_010610.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 1976179 6233113 LAF_1737 Lactobacillus fermentum IFO 3956 D-ribose pyranase YP_001844553.1 1975784 R 334390 CDS YP_001844554.1 184156214 6233114 complement(1976203..1977120) 1 NC_010610.1 ribokinase 1977120 6233114 LAF_1738 Lactobacillus fermentum IFO 3956 ribokinase YP_001844554.1 1976203 R 334390 CDS YP_001844555.1 184156215 6233115 complement(1977365..1978318) 1 NC_010610.1 deoxyribonucleoside regulator 1978318 6233115 LAF_1739 Lactobacillus fermentum IFO 3956 deoxyribonucleoside regulator YP_001844555.1 1977365 R 334390 CDS YP_001844556.1 184156216 6233116 1978428..1979081 1 NC_010610.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1979081 6233116 LAF_1740 Lactobacillus fermentum IFO 3956 deoxyribose-phosphate aldolase YP_001844556.1 1978428 D 334390 CDS YP_001844557.1 184156217 6233117 1979095..1980111 1 NC_010610.1 hypothetical protein 1980111 6233117 LAF_1741 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844557.1 1979095 D 334390 CDS YP_001844558.1 184156218 6233118 1980145..1981092 1 NC_010610.1 ribokinase 1981092 6233118 LAF_1742 Lactobacillus fermentum IFO 3956 ribokinase YP_001844558.1 1980145 D 334390 CDS YP_001844559.1 184156219 6233119 complement(1981152..1982576) 1 NC_010610.1 PTS system galactitol-specific IIC component 1982576 6233119 LAF_1743 Lactobacillus fermentum IFO 3956 PTS system galactitol-specific IIC component YP_001844559.1 1981152 R 334390 CDS YP_001844560.1 184156220 6233120 1982774..1983778 1 NC_010610.1 transcriptional regulator 1983778 6233120 LAF_1744 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844560.1 1982774 D 334390 CDS YP_001844561.1 184156221 6233121 complement(1984332..1985837) 1 NC_010610.1 amino acid transporter 1985837 6233121 LAF_1745 Lactobacillus fermentum IFO 3956 amino acid transporter YP_001844561.1 1984332 R 334390 CDS YP_001844562.1 184156222 6233122 complement(1986414..1986848) 1 NC_010610.1 hypothetical protein 1986848 6233122 LAF_1746 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844562.1 1986414 R 334390 CDS YP_001844563.1 184156223 6233123 complement(1987128..1989527) 1 NC_010610.1 phosphoketolase 1989527 6233123 LAF_1747 Lactobacillus fermentum IFO 3956 phosphoketolase YP_001844563.1 1987128 R 334390 CDS YP_001844564.1 184156224 6233124 complement(1989733..1990530) 1 NC_010610.1 hypothetical protein 1990530 6233124 LAF_1748 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844564.1 1989733 R 334390 CDS YP_001844565.1 184156225 6233125 complement(1990537..1991265) 1 NC_010610.1 transcriptional regulator 1991265 6233125 LAF_1749 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844565.1 1990537 R 334390 CDS YP_001844566.1 184156226 6233126 1991409..1991909 1 NC_010610.1 hypothetical protein 1991909 6233126 LAF_1750 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844566.1 1991409 D 334390 CDS YP_001844567.1 184156227 6233127 1991913..1992656 1 NC_010610.1 hypothetical protein 1992656 6233127 LAF_1751 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844567.1 1991913 D 334390 CDS YP_001844568.1 184156228 6233128 1992716..1994152 1 NC_010610.1 dipeptidase 1994152 6233128 LAF_1752 Lactobacillus fermentum IFO 3956 dipeptidase YP_001844568.1 1992716 D 334390 CDS YP_001844569.1 184156229 6233129 1994631..1995443 1 NC_010610.1 hypothetical protein 1995443 6233129 LAF_1753 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844569.1 1994631 D 334390 CDS YP_001844570.1 184156230 6233130 complement(1995703..1996218) 1 NC_010610.1 hypothetical protein 1996218 6233130 LAF_1754 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844570.1 1995703 R 334390 CDS YP_001844571.1 184156231 6233131 complement(1996228..1996875) 1 NC_010610.1 hypothetical protein 1996875 6233131 LAF_1755 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844571.1 1996228 R 334390 CDS YP_001844572.1 184156232 6233132 1996904..1998289 1 NC_010610.1 hypothetical protein 1998289 6233132 LAF_1756 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844572.1 1996904 D 334390 CDS YP_001844573.1 184156233 6233133 1998376..1998840 1 NC_010610.1 ribonucleotide reductase 1998840 6233133 LAF_1757 Lactobacillus fermentum IFO 3956 ribonucleotide reductase YP_001844573.1 1998376 D 334390 CDS YP_001844574.1 184156234 6233134 complement(1999085..1999516) 1 NC_010610.1 hypothetical protein 1999516 6233134 LAF_1758 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844574.1 1999085 R 334390 CDS YP_001844575.1 184156235 6233135 1999709..2000878 1 NC_010610.1 transport protein 2000878 6233135 LAF_1759 Lactobacillus fermentum IFO 3956 transport protein YP_001844575.1 1999709 D 334390 CDS YP_001844576.1 184156236 6233136 2001318..2002799 1 NC_010610.1 glucose-6-phosphate 1-dehydrogenase 2002799 6233136 LAF_1760 Lactobacillus fermentum IFO 3956 glucose-6-phosphate 1-dehydrogenase YP_001844576.1 2001318 D 334390 CDS YP_001844577.1 184156237 6233137 2002983..2004422 1 NC_010610.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2004422 6233137 LAF_1761 Lactobacillus fermentum IFO 3956 6-phosphogluconate dehydrogenase YP_001844577.1 2002983 D 334390 CDS YP_001844578.1 184156238 6233138 complement(2004677..2005150) 1 NC_010610.1 hypothetical protein 2005150 6233138 LAF_1762 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844578.1 2004677 R 334390 CDS YP_001844579.1 184156239 6233139 2005312..2005767 1 NC_010610.1 transcriptional regulator 2005767 6233139 LAF_1763 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844579.1 2005312 D 334390 CDS YP_001844580.1 184156240 6233140 2005925..2006692 1 NC_010610.1 oxidoreductase 2006692 6233140 LAF_1764 Lactobacillus fermentum IFO 3956 oxidoreductase YP_001844580.1 2005925 D 334390 CDS YP_001844581.1 184156241 6233141 2006709..2007710 1 NC_010610.1 transcriptional regulator 2007710 6233141 LAF_1765 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844581.1 2006709 D 334390 CDS YP_001844582.1 184156242 6233142 complement(2007982..2009790) 1 NC_010610.1 oligoendopeptidase F 2009790 6233142 LAF_1766 Lactobacillus fermentum IFO 3956 oligoendopeptidase F YP_001844582.1 2007982 R 334390 CDS YP_001844583.1 184156243 6233143 complement(2009793..2011085) 1 NC_010610.1 proton/sodium-glutamate symport protein 2011085 6233143 LAF_1767 Lactobacillus fermentum IFO 3956 proton/sodium-glutamate symport protein YP_001844583.1 2009793 R 334390 CDS YP_001844584.1 184156244 6233144 2011333..2012004 1 NC_010610.1 hypothetical protein 2012004 6233144 LAF_1768 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844584.1 2011333 D 334390 CDS YP_001844585.1 184156245 6233145 2012711..2013478 1 NC_010610.1 transposase 2013478 6233145 LAF_1769 Lactobacillus fermentum IFO 3956 transposase YP_001844585.1 2012711 D 334390 CDS YP_001844586.1 184156246 6233146 2013659..2015056 1 NC_010610.1 D-lactate dehydrogenase 2015056 6233146 LAF_1770 Lactobacillus fermentum IFO 3956 D-lactate dehydrogenase YP_001844586.1 2013659 D 334390 CDS YP_001844587.1 184156247 6233147 2015160..2016347 1 NC_010610.1 transposase 2016347 6233147 LAF_1771 Lactobacillus fermentum IFO 3956 transposase YP_001844587.1 2015160 D 334390 CDS YP_001844588.1 184156248 6233148 complement(2017287..2017946) 1 NC_010610.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 2017946 6233148 LAF_1772 Lactobacillus fermentum IFO 3956 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II YP_001844588.1 2017287 R 334390 CDS YP_001844589.1 184156249 6233149 complement(2018424..2018852) 1 NC_010610.1 hypothetical protein 2018852 6233149 LAF_1773 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844589.1 2018424 R 334390 CDS YP_001844590.1 184156250 6233150 complement(2018833..2019189) 1 NC_010610.1 hypothetical protein 2019189 6233150 LAF_1774 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844590.1 2018833 R 334390 CDS YP_001844591.1 184156251 6233151 complement(2019191..2019913) 1 NC_010610.1 hypothetical protein 2019913 6233151 LAF_1775 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844591.1 2019191 R 334390 CDS YP_001844592.1 184156252 6233152 2020986..2021822 1 NC_010610.1 transcriptional regulator 2021822 6233152 LAF_1776 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844592.1 2020986 D 334390 CDS YP_001844593.1 184156253 6233153 complement(2022493..2024715) 1 NC_010610.1 alpha-galactosidase 2024715 6233153 LAF_1777 Lactobacillus fermentum IFO 3956 alpha-galactosidase YP_001844593.1 2022493 R 334390 CDS YP_001844594.1 184156254 6233154 2024980..2026167 1 NC_010610.1 transposase 2026167 6233154 LAF_1778 Lactobacillus fermentum IFO 3956 transposase YP_001844594.1 2024980 D 334390 CDS YP_001844595.1 184156255 6233155 complement(2026178..2027152) 1 NC_010610.1 hypothetical protein 2027152 6233155 LAF_1779 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844595.1 2026178 R 334390 CDS YP_001844596.1 184156256 6233156 complement(2027149..2028369) 1 NC_010610.1 transposase 2028369 6233156 LAF_1780 Lactobacillus fermentum IFO 3956 transposase YP_001844596.1 2027149 R 334390 CDS YP_001844597.1 184156257 6233157 2030677..2031600 1 NC_010610.1 transposase 2031600 6233157 LAF_1781 Lactobacillus fermentum IFO 3956 transposase YP_001844597.1 2030677 D 334390 CDS YP_001844598.1 184156258 6233158 complement(2034381..2035601) 1 NC_010610.1 transposase 2035601 6233158 LAF_1782 Lactobacillus fermentum IFO 3956 transposase YP_001844598.1 2034381 R 334390 CDS YP_001844599.1 184156259 6233159 2035967..2036449 1 NC_010610.1 resolvase 2036449 6233159 LAF_1783 Lactobacillus fermentum IFO 3956 resolvase YP_001844599.1 2035967 D 334390 CDS YP_001844600.1 184156260 6233160 complement(2036778..2037449) 1 NC_010610.1 ABC transporter ATP-binding protein 2037449 6233160 LAF_1784 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844600.1 2036778 R 334390 CDS YP_001844601.1 184156261 6233161 complement(2037454..2038500) 1 NC_010610.1 ABC transporter permease 2038500 6233161 LAF_1785 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844601.1 2037454 R 334390 CDS YP_001844602.1 184156262 6233162 complement(2038615..2039802) 1 NC_010610.1 transposase 2039802 6233162 LAF_1786 Lactobacillus fermentum IFO 3956 transposase YP_001844602.1 2038615 R 334390 CDS YP_001844603.1 184156263 6233163 complement(2039906..2040355) 1 NC_010610.1 phytoene/squalene synthase 2040355 6233163 LAF_1787 Lactobacillus fermentum IFO 3956 phytoene/squalene synthase YP_001844603.1 2039906 R 334390 CDS YP_001844604.1 184156264 6233164 2041272..2042120 1 NC_010610.1 transposase 2042120 6233164 LAF_1788 Lactobacillus fermentum IFO 3956 transposase YP_001844604.1 2041272 D 334390 CDS YP_001844605.1 184156265 6233165 2043119..2043727 1 NC_010610.1 transposase 2043727 6233165 LAF_1789 Lactobacillus fermentum IFO 3956 transposase YP_001844605.1 2043119 D 334390 CDS YP_001844606.1 184156266 6233166 complement(2043875..2044876) 1 NC_010610.1 galactose operon repressor 2044876 6233166 LAF_1790 Lactobacillus fermentum IFO 3956 galactose operon repressor YP_001844606.1 2043875 R 334390 CDS YP_001844607.1 184156267 6233167 complement(2044904..2046358) 1 NC_010610.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 2046358 6233167 LAF_1791 Lactobacillus fermentum IFO 3956 galactose-1-phosphate uridylyltransferase YP_001844607.1 2044904 R 334390 CDS YP_001844608.1 184156268 6233168 complement(2046386..2047552) 1 NC_010610.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 2047552 6233168 LAF_1792 Lactobacillus fermentum IFO 3956 galactokinase YP_001844608.1 2046386 R 334390 CDS YP_001844609.1 184156269 6233169 2047724..2048674 1 NC_010610.1 hypothetical protein 2048674 6233169 LAF_1793 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844609.1 2047724 D 334390 CDS YP_001844610.1 184156270 6233170 2048671..2049468 1 NC_010610.1 protein-tyrosine phosphatase 2049468 6233170 LAF_1794 Lactobacillus fermentum IFO 3956 protein-tyrosine phosphatase YP_001844610.1 2048671 D 334390 CDS YP_001844611.1 184156271 6233171 2049487..2049999 1 NC_010610.1 hypothetical protein 2049999 6233171 LAF_1795 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844611.1 2049487 D 334390 CDS YP_001844612.1 184156272 6233172 2050012..2050236 1 NC_010610.1 hypothetical protein 2050236 6233172 LAF_1796 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844612.1 2050012 D 334390 CDS YP_001844613.1 184156273 6233173 complement(2050352..2051086) 1 NC_010610.1 amino acid ABC transporter ATP-binding protein 2051086 6233173 LAF_1797 Lactobacillus fermentum IFO 3956 amino acid ABC transporter ATP-binding protein YP_001844613.1 2050352 R 334390 CDS YP_001844614.1 184156274 6233174 complement(2051088..2051777) 1 NC_010610.1 amino acid ABC transporter permease 2051777 6233174 LAF_1798 Lactobacillus fermentum IFO 3956 amino acid ABC transporter permease YP_001844614.1 2051088 R 334390 CDS YP_001844615.1 184156275 6233175 complement(2051880..2052680) 1 NC_010610.1 amino acid ABC transporter substrate-binding protein 2052680 6233175 LAF_1799 Lactobacillus fermentum IFO 3956 amino acid ABC transporter substrate-binding protein YP_001844615.1 2051880 R 334390 CDS YP_001844616.1 184156276 6233176 complement(2052819..2053145) 1 NC_010610.1 hypothetical protein 2053145 6233176 LAF_1800 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844616.1 2052819 R 334390 CDS YP_001844617.1 184156277 6233177 2053247..2054185 1 NC_010610.1 phosphoglycerate dehydrogenase 2054185 6233177 LAF_1801 Lactobacillus fermentum IFO 3956 phosphoglycerate dehydrogenase YP_001844617.1 2053247 D 334390 CDS YP_001844618.1 184156278 6233178 2054187..2054669 1 NC_010610.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2054669 greA 6233178 greA Lactobacillus fermentum IFO 3956 transcription elongation factor GreA YP_001844618.1 2054187 D 334390 CDS YP_001844619.1 184156279 6233179 2054745..2055680 1 NC_010610.1 hypothetical protein 2055680 6233179 LAF_1803 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844619.1 2054745 D 334390 CDS YP_001844620.1 184156280 6233180 complement(2055787..2056296) 1 NC_010610.1 hypothetical protein 2056296 6233180 LAF_1804 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844620.1 2055787 R 334390 CDS YP_001844621.1 184156281 6233181 complement(2056305..2058209) 1 NC_010610.1 endopeptidase 2058209 6233181 LAF_1805 Lactobacillus fermentum IFO 3956 endopeptidase YP_001844621.1 2056305 R 334390 CDS YP_001844622.1 184156282 6233182 complement(2058469..2059779) 1 NC_010610.1 transport protein 2059779 6233182 LAF_1806 Lactobacillus fermentum IFO 3956 transport protein YP_001844622.1 2058469 R 334390 CDS YP_001844623.1 184156283 6233183 complement(2059876..2060169) 1 NC_010610.1 hypothetical protein 2060169 6233183 LAF_1807 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844623.1 2059876 R 334390 CDS YP_001844624.1 184156284 6233184 complement(2060162..2061319) 1 NC_010610.1 hypothetical protein 2061319 6233184 LAF_1808 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844624.1 2060162 R 334390 CDS YP_001844625.1 184156285 6233185 complement(2061316..2062458) 1 NC_010610.1 hypothetical protein 2062458 6233185 LAF_1809 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844625.1 2061316 R 334390 CDS YP_001844626.1 184156286 6233186 complement(2062460..2063089) 1 NC_010610.1 3-methyladenine DNA glycosylase 2063089 6233186 LAF_1810 Lactobacillus fermentum IFO 3956 3-methyladenine DNA glycosylase YP_001844626.1 2062460 R 334390 CDS YP_001844627.1 184156287 6233187 2063149..2063517 1 NC_010610.1 hypothetical protein 2063517 6233187 LAF_1811 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844627.1 2063149 D 334390 CDS YP_001844628.1 184156288 6233188 complement(2063808..2063993) 1 NC_010610.1 hypothetical protein 2063993 6233188 LAF_1812 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844628.1 2063808 R 334390 CDS YP_001844629.1 184156289 6232585 complement(2063994..2064668) 1 NC_010610.1 NAD(P)H oxidoreductase 2064668 6232585 LAF_1813 Lactobacillus fermentum IFO 3956 NAD(P)H oxidoreductase YP_001844629.1 2063994 R 334390 CDS YP_001844630.1 184156290 6232586 complement(2064671..2064994) 1 NC_010610.1 hypothetical protein 2064994 6232586 LAF_1814 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844630.1 2064671 R 334390 CDS YP_001844631.1 184156291 6232587 2065088..2065714 1 NC_010610.1 hypothetical protein 2065714 6232587 LAF_1815 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844631.1 2065088 D 334390 CDS YP_001844632.1 184156292 6232588 complement(2065895..2066452) 1 NC_010610.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2066452 6232588 LAF_1816 Lactobacillus fermentum IFO 3956 elongation factor P YP_001844632.1 2065895 R 334390 CDS YP_001844633.1 184156293 6232589 complement(2066599..2067231) 1 NC_010610.1 hypothetical protein 2067231 6232589 LAF_1817 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844633.1 2066599 R 334390 CDS YP_001844634.1 184156294 6232590 2067368..2067601 1 NC_010610.1 hypothetical protein 2067601 6232590 LAF_1818 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844634.1 2067368 D 334390 CDS YP_001844635.1 184156295 6232591 complement(2067598..2068596) 1 NC_010610.1 sucrose operon repressor 2068596 6232591 LAF_1819 Lactobacillus fermentum IFO 3956 sucrose operon repressor YP_001844635.1 2067598 R 334390 CDS YP_001844636.1 184156296 6232592 2068975..2071098 1 NC_010610.1 hypothetical protein 2071098 6232592 LAF_1820 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844636.1 2068975 D 334390 CDS YP_001844637.1 184156297 6232267 2071217..2071537 1 NC_010610.1 transcriptional regulator 2071537 6232267 LAF_1821 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844637.1 2071217 D 334390 CDS YP_001844638.1 184156298 6232350 2071782..2073068 1 NC_010610.1 transposase 2073068 6232350 LAF_1822 Lactobacillus fermentum IFO 3956 transposase YP_001844638.1 2071782 D 334390 CDS YP_001844639.1 184156299 6232351 complement(2073199..2073657) 1 NC_010610.1 arginine repressor 2073657 6232351 LAF_1823 Lactobacillus fermentum IFO 3956 arginine repressor YP_001844639.1 2073199 R 334390 CDS YP_001844640.1 184156300 6232352 complement(2073818..2074510) 1 NC_010610.1 ABC transporter ATP-binding protein 2074510 6232352 LAF_1824 Lactobacillus fermentum IFO 3956 ABC transporter ATP-binding protein YP_001844640.1 2073818 R 334390 CDS YP_001844641.1 184156301 6232353 complement(2074523..2075548) 1 NC_010610.1 ABC transporter permease 2075548 6232353 LAF_1825 Lactobacillus fermentum IFO 3956 ABC transporter permease YP_001844641.1 2074523 R 334390 CDS YP_001844642.1 184156302 6232354 complement(2075508..2076110) 1 NC_010610.1 transcriptional regulator 2076110 6232354 LAF_1826 Lactobacillus fermentum IFO 3956 transcriptional regulator YP_001844642.1 2075508 R 334390 CDS YP_001844643.1 184156303 6232355 complement(2076267..2077277) 1 NC_010610.1 dehydrogenase 2077277 6232355 LAF_1827 Lactobacillus fermentum IFO 3956 dehydrogenase YP_001844643.1 2076267 R 334390 CDS YP_001844644.1 184156304 6232356 2077573..2079135 1 NC_010610.1 manganese transport protein 2079135 6232356 LAF_1828 Lactobacillus fermentum IFO 3956 manganese transport protein YP_001844644.1 2077573 D 334390 CDS YP_001844645.1 184156305 6232357 2079510..2080253 1 NC_010610.1 hypothetical protein 2080253 6232357 LAF_1829 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844645.1 2079510 D 334390 CDS YP_001844646.1 184156306 6232358 2080470..2082374 1 NC_010610.1 threonyl-tRNA synthase 2082374 6232358 LAF_1830 Lactobacillus fermentum IFO 3956 threonyl-tRNA synthase YP_001844646.1 2080470 D 334390 CDS YP_001844647.1 184156307 6232359 2082519..2083133 1 NC_010610.1 hypothetical protein 2083133 6232359 LAF_1831 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844647.1 2082519 D 334390 CDS YP_001844648.1 184156308 6232360 2083139..2084017 1 NC_010610.1 hypothetical protein 2084017 6232360 LAF_1832 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844648.1 2083139 D 334390 CDS YP_001844649.1 184156309 6232361 complement(2084212..2084823) 1 NC_010610.1 signal peptidase I 2084823 6232361 LAF_1833 Lactobacillus fermentum IFO 3956 signal peptidase I YP_001844649.1 2084212 R 334390 CDS YP_001844650.1 184156310 6232362 complement(2084898..2086454) 1 NC_010610.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2086454 murE 6232362 murE Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001844650.1 2084898 R 334390 CDS YP_001844651.1 184156311 6232363 complement(2086459..2087994) 1 NC_010610.1 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase 2087994 6232363 LAF_1835 Lactobacillus fermentum IFO 3956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase YP_001844651.1 2086459 R 334390 CDS YP_001844652.1 184156312 6232364 complement(2087994..2089904) 1 NC_010610.1 asparagine synthase 2089904 6232364 LAF_1836 Lactobacillus fermentum IFO 3956 asparagine synthase YP_001844652.1 2087994 R 334390 CDS YP_001844653.1 184156313 6232365 complement(2091743..2092120) 1 NC_010610.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 2092120 mscL 6232365 mscL Lactobacillus fermentum IFO 3956 large-conductance mechanosensitive channel YP_001844653.1 2091743 R 334390 CDS YP_001844654.1 184156314 6232366 complement(2092380..2094284) 1 NC_010610.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2094284 6232366 LAF_1838 Lactobacillus fermentum IFO 3956 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_001844654.1 2092380 R 334390 CDS YP_001844655.1 184156315 6232367 complement(2094299..2095687) 1 NC_010610.1 GTPase 2095687 6232367 LAF_1839 Lactobacillus fermentum IFO 3956 GTPase YP_001844655.1 2094299 R 334390 CDS YP_001844656.1 184156316 6232368 complement(2095833..2096693) 1 NC_010610.1 hypothetical protein 2096693 6232368 LAF_1840 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844656.1 2095833 R 334390 CDS YP_001844657.1 184156317 6232369 complement(2096724..2097557) 1 NC_010610.1 hypothetical protein 2097557 6232369 LAF_1841 Lactobacillus fermentum IFO 3956 hypothetical protein YP_001844657.1 2096724 R 334390 CDS YP_001844658.1 184156318 6232370 complement(2097573..2097917) 1 NC_010610.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 2097917 rnpA 6232370 rnpA Lactobacillus fermentum IFO 3956 ribonuclease P YP_001844658.1 2097573 R 334390 CDS YP_001844659.1 184156319 6232371 complement(2098033..2098167) 1 NC_010610.1 50S ribosomal protein L34 2098167 6232371 LAF_1843 Lactobacillus fermentum IFO 3956 50S ribosomal protein L34 YP_001844659.1 2098033 R 334390 CDS