-- dump date 20111121_012659 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 334390000001 SEQ_END SEQ_END NC_010610.1 2098685 2098685 DR NC_010610.1; contig end 2098685..2098685 Lactobacillus fermentum IFO 3956 YP_001842817.1 CDS LAF_0001 NC_010610.1 1 1317 D chromosomal replication initiation protein DnaA 1..1317 Lactobacillus fermentum IFO 3956 6233574 YP_001842818.1 CDS LAF_0002 NC_010610.1 1482 2621 D DNA-directed DNA polymerase III subunit beta 1482..2621 Lactobacillus fermentum IFO 3956 6233575 YP_001842819.1 CDS LAF_0003 NC_010610.1 2843 3061 D hypothetical protein 2843..3061 Lactobacillus fermentum IFO 3956 6233576 YP_001842820.1 CDS recF NC_010610.1 3071 4192 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3071..4192 Lactobacillus fermentum IFO 3956 6233577 YP_001842821.1 CDS LAF_0005 NC_010610.1 4192 6141 D DNA gyrase subunit B 4192..6141 Lactobacillus fermentum IFO 3956 6233578 YP_001842822.1 CDS LAF_0006 NC_010610.1 6167 8677 D DNA gyrase subunit A 6167..8677 Lactobacillus fermentum IFO 3956 6233579 YP_001842823.1 CDS rpsF NC_010610.1 8884 9177 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 8884..9177 Lactobacillus fermentum IFO 3956 6233580 YP_001842824.1 CDS LAF_0008 NC_010610.1 9218 9943 D single-strand binding protein 9218..9943 Lactobacillus fermentum IFO 3956 6233581 YP_001842825.1 CDS rpsR NC_010610.1 9982 10218 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 9982..10218 Lactobacillus fermentum IFO 3956 6233582 YP_001842826.1 CDS LAF_0010 NC_010610.1 10343 12376 D hypothetical protein 10343..12376 Lactobacillus fermentum IFO 3956 6233583 YP_001842827.1 CDS rplI NC_010610.1 12376 12828 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 12376..12828 Lactobacillus fermentum IFO 3956 6233584 YP_001842828.1 CDS LAF_0012 NC_010610.1 12873 14276 D replicative DNA helicase 12873..14276 Lactobacillus fermentum IFO 3956 6233585 YP_001842829.1 CDS LAF_0013 NC_010610.1 14360 15535 D multidrug transport protein 14360..15535 Lactobacillus fermentum IFO 3956 6233586 YP_001842830.1 CDS LAF_0014 NC_010610.1 15547 15879 D hypothetical protein 15547..15879 Lactobacillus fermentum IFO 3956 6233587 YP_001842831.1 CDS LAF_0015 NC_010610.1 16335 17042 D two-component response regulator 16335..17042 Lactobacillus fermentum IFO 3956 6232382 YP_001842832.1 CDS LAF_0016 NC_010610.1 17054 18913 D two-component sensor histidine kinase 17054..18913 Lactobacillus fermentum IFO 3956 6233589 YP_001842833.1 CDS LAF_0017 NC_010610.1 18897 20195 D hypothetical protein 18897..20195 Lactobacillus fermentum IFO 3956 6233590 YP_001842834.1 CDS LAF_0018 NC_010610.1 20197 20997 D hypothetical protein 20197..20997 Lactobacillus fermentum IFO 3956 6233591 YP_001842835.1 CDS LAF_0019 NC_010610.1 21012 21827 D hypothetical protein 21012..21827 Lactobacillus fermentum IFO 3956 6233592 YP_001842836.1 CDS LAF_0020 NC_010610.1 21902 23173 D serine protease 21902..23173 Lactobacillus fermentum IFO 3956 6233593 YP_001842837.1 CDS LAF_0021 NC_010610.1 23681 24160 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 23681..24160 Lactobacillus fermentum IFO 3956 6233594 YP_001842838.1 CDS LAF_0022 NC_010610.1 24375 24800 D hypothetical protein 24375..24800 Lactobacillus fermentum IFO 3956 6233595 YP_001842839.1 CDS LAF_0023 NC_010610.1 24806 25741 D transcriptional regulator 24806..25741 Lactobacillus fermentum IFO 3956 6233596 YP_001842840.1 CDS LAF_0024 NC_010610.1 26121 27464 D sugar transport protein 26121..27464 Lactobacillus fermentum IFO 3956 6233597 YP_001842841.1 CDS LAF_0025 NC_010610.1 27477 29723 D maltose phosphorylase 27477..29723 Lactobacillus fermentum IFO 3956 6233598 YP_001842842.1 CDS LAF_0026 NC_010610.1 29870 30538 D beta-phosphoglucomutase 29870..30538 Lactobacillus fermentum IFO 3956 6233599 YP_001842843.1 CDS LAF_0027 NC_010610.1 30621 31286 R hypothetical protein complement(30621..31286) Lactobacillus fermentum IFO 3956 6233600 YP_001842844.1 CDS LAF_0028 NC_010610.1 31337 32314 R penicillin acylase complement(31337..32314) Lactobacillus fermentum IFO 3956 6233601 YP_001842845.1 CDS LAF_0029 NC_010610.1 32369 33304 R cell surface hydrolase complement(32369..33304) Lactobacillus fermentum IFO 3956 6233602 YP_001842846.1 CDS LAF_0030 NC_010610.1 33607 34599 R D-lactate dehydrogenase complement(33607..34599) Lactobacillus fermentum IFO 3956 6233603 YP_001842847.1 CDS LAF_0031 NC_010610.1 34615 35799 R aromatic amino acid aminotransferase complement(34615..35799) Lactobacillus fermentum IFO 3956 6233604 YP_001842848.1 CDS LAF_0032 NC_010610.1 36148 36378 D hypothetical protein 36148..36378 Lactobacillus fermentum IFO 3956 6233605 YP_001842849.1 CDS LAF_0033 NC_010610.1 36473 38566 D ATP-dependent Clp protease ATP-binding subunit 36473..38566 Lactobacillus fermentum IFO 3956 6233606 YP_001842850.1 CDS LAF_0034 NC_010610.1 38599 38823 R hypothetical protein complement(38599..38823) Lactobacillus fermentum IFO 3956 6233607 YP_001842851.1 CDS LAF_0035 NC_010610.1 38867 40327 D cardiolipin synthase 38867..40327 Lactobacillus fermentum IFO 3956 6233608 YP_001842852.1 CDS LAF_0036 NC_010610.1 40810 44547 D ATP-dependent nuclease subunit B 40810..44547 Lactobacillus fermentum IFO 3956 6233609 YP_001842853.1 CDS LAF_0037 NC_010610.1 44554 48567 D ATP-dependent nuclease subunit A 44554..48567 Lactobacillus fermentum IFO 3956 6233610 YP_001842854.1 CDS LAF_0038 NC_010610.1 48567 49430 D oxidoreductase 48567..49430 Lactobacillus fermentum IFO 3956 6233611 YP_001842855.1 CDS LAF_0039 NC_010610.1 49669 51294 D glycerophosphodiester phosphodiesterase 49669..51294 Lactobacillus fermentum IFO 3956 6233612 YP_001842856.1 CDS LAF_0040 NC_010610.1 51588 51944 R arsenate reductase complement(51588..51944) Lactobacillus fermentum IFO 3956 6233613 YP_001842857.1 CDS LAF_0041 NC_010610.1 51982 53097 R ABC transporter permease complement(51982..53097) Lactobacillus fermentum IFO 3956 6233614 YP_001842858.1 CDS LAF_0042 NC_010610.1 53090 53821 R ABC transporter ATP-binding protein complement(53090..53821) Lactobacillus fermentum IFO 3956 6233615 YP_001842859.1 CDS LAF_0043 NC_010610.1 53948 54514 D hypothetical protein 53948..54514 Lactobacillus fermentum IFO 3956 6233616 YP_001842860.1 CDS LAF_0044 NC_010610.1 55767 57056 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 55767..57056 Lactobacillus fermentum IFO 3956 6233617 YP_001842861.1 CDS LAF_0045 NC_010610.1 57383 58738 D succinic semialdehyde dehydrogenase 57383..58738 Lactobacillus fermentum IFO 3956 6233618 YP_001842862.1 CDS LAF_0046 NC_010610.1 59048 59587 D pyrimidine operon regulator 59048..59587 Lactobacillus fermentum IFO 3956 6233619 YP_001842863.1 CDS LAF_0047 NC_010610.1 59706 60437 D orotidine-5'-phosphate decarboxylase 59706..60437 Lactobacillus fermentum IFO 3956 6233620 YP_001842864.1 CDS LAF_0048 NC_010610.1 60437 61063 D orotate phosphoribosyltransferase 60437..61063 Lactobacillus fermentum IFO 3956 6233621 YP_001842865.1 CDS LAF_0049 NC_010610.1 61624 62049 R transposase complement(61624..62049) Lactobacillus fermentum IFO 3956 6233622 YP_001842866.1 CDS LAF_0050 NC_010610.1 62125 63411 D transposase 62125..63411 Lactobacillus fermentum IFO 3956 6233623 YP_001842867.1 CDS LAF_0051 NC_010610.1 64286 65824 D poly(glycerol-phosphate) alpha-glucosyltransferase 64286..65824 Lactobacillus fermentum IFO 3956 6233624 YP_001842868.1 CDS LAF_0052 NC_010610.1 65824 67320 D poly(glycerol-phosphate) alpha-glucosyltransferase 65824..67320 Lactobacillus fermentum IFO 3956 6233625 YP_001842869.1 CDS LAF_0053 NC_010610.1 67730 68572 D hypothetical protein 67730..68572 Lactobacillus fermentum IFO 3956 6233626 YP_001842870.1 CDS LAF_0054 NC_010610.1 68598 69662 D ABC transporter ATP-binding protein 68598..69662 Lactobacillus fermentum IFO 3956 6233627 YP_001842871.1 CDS LAF_0055 NC_010610.1 69655 70356 D ABC transporter permease 69655..70356 Lactobacillus fermentum IFO 3956 6233628 YP_001842872.1 CDS LAF_0056 NC_010610.1 70482 71630 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 70482..71630 Lactobacillus fermentum IFO 3956 6233629 YP_001842873.1 CDS LAF_0057 NC_010610.1 71930 73537 R RNA methyltransferase complement(71930..73537) Lactobacillus fermentum IFO 3956 6233630 YP_001842874.1 CDS LAF_0058 NC_010610.1 73909 74346 D transposase 73909..74346 Lactobacillus fermentum IFO 3956 6233631 YP_001842875.1 CDS LAF_0059 NC_010610.1 74343 75506 D transposase 74343..75506 Lactobacillus fermentum IFO 3956 6232158 YP_001842876.1 CDS LAF_0060 NC_010610.1 76377 77669 R D-alanyl transfer protein complement(76377..77669) Lactobacillus fermentum IFO 3956 6232159 YP_001842877.1 CDS LAF_0061 NC_010610.1 77683 77934 R D-alanyl carrier protein complement(77683..77934) Lactobacillus fermentum IFO 3956 6232160 YP_001842878.1 CDS LAF_0062 NC_010610.1 77949 79175 R D-alanyl transfer protein complement(77949..79175) Lactobacillus fermentum IFO 3956 6232161 YP_001842879.1 CDS LAF_0063 NC_010610.1 79175 80704 R D-alanine-activating enzyme complement(79175..80704) Lactobacillus fermentum IFO 3956 6232162 YP_001842880.1 CDS LAF_0064 NC_010610.1 81076 82209 D exonuclease SbcD 81076..82209 Lactobacillus fermentum IFO 3956 6232163 YP_001842881.1 CDS LAF_0065 NC_010610.1 82206 85310 D exonuclease SbcC 82206..85310 Lactobacillus fermentum IFO 3956 6232164 YP_001842882.1 CDS LAF_0066 NC_010610.1 85598 86896 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 85598..86896 Lactobacillus fermentum IFO 3956 6232165 YP_001842883.1 CDS LAF_0067 NC_010610.1 87382 88395 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II complement(87382..88395) Lactobacillus fermentum IFO 3956 6232383 YP_001842884.1 CDS LAF_0068 NC_010610.1 88653 89906 R tyrosyl-tRNA synthase complement(88653..89906) Lactobacillus fermentum IFO 3956 6232167 YP_001842885.1 CDS LAF_0069 NC_010610.1 90572 91828 D glutamine ABC transporter permease 90572..91828 Lactobacillus fermentum IFO 3956 6232168 YP_001842886.1 CDS LAF_0070 NC_010610.1 91832 92575 D glutamine ABC transporter ATP-binding protein 91832..92575 Lactobacillus fermentum IFO 3956 6232169 YP_001842887.1 CDS LAF_0071 NC_010610.1 93082 94455 D amino acid transporter 93082..94455 Lactobacillus fermentum IFO 3956 6232170 YP_001842888.1 CDS LAF_0072 NC_010610.1 94779 96029 R transposase complement(94779..96029) Lactobacillus fermentum IFO 3956 6232171 YP_001842889.1 CDS LAF_0073 NC_010610.1 96108 96560 D transposase 96108..96560 Lactobacillus fermentum IFO 3956 6232172 YP_001842890.1 CDS LAF_0074 NC_010610.1 97271 98470 D nucleoside transport protein 97271..98470 Lactobacillus fermentum IFO 3956 6232173 YP_001842891.1 CDS gidB NC_010610.1 99815 100552 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 99815..100552 Lactobacillus fermentum IFO 3956 6232174 YP_001842892.1 CDS LAF_0076 NC_010610.1 100571 101506 D chromosome partitioning protein ParB 100571..101506 Lactobacillus fermentum IFO 3956 6231779 YP_001842893.1 CDS LAF_0077 NC_010610.1 101490 102353 D chromosome partitioning protein ParB 101490..102353 Lactobacillus fermentum IFO 3956 6232595 YP_001842894.1 CDS LAF_0078 NC_010610.1 102366 102566 D hypothetical protein 102366..102566 Lactobacillus fermentum IFO 3956 6232596 YP_001842895.1 CDS LAF_0079 NC_010610.1 102582 103679 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 102582..103679 Lactobacillus fermentum IFO 3956 6232597 YP_001842896.1 CDS LAF_0080 NC_010610.1 103713 104486 D hypothetical protein 103713..104486 Lactobacillus fermentum IFO 3956 6232734 YP_001842897.1 CDS LAF_0081 NC_010610.1 104757 105899 D inosine-5'-monophosphate dehydrogenase 104757..105899 Lactobacillus fermentum IFO 3956 6231940 YP_001842898.1 CDS LAF_0082 NC_010610.1 106246 107262 R transposase complement(106246..107262) Lactobacillus fermentum IFO 3956 6231941 YP_001842899.1 CDS LAF_0083 NC_010610.1 107553 108653 D transposase 107553..108653 Lactobacillus fermentum IFO 3956 6232598 YP_001842900.1 CDS LAF_0084 NC_010610.1 108801 109802 D hypothetical protein 108801..109802 Lactobacillus fermentum IFO 3956 6232599 YP_001842901.1 CDS LAF_0085 NC_010610.1 109802 110572 D hypothetical protein 109802..110572 Lactobacillus fermentum IFO 3956 6232175 YP_001842902.1 CDS LAF_0086 NC_010610.1 110589 111332 D exopolysaccharide biosynthesis protein 110589..111332 Lactobacillus fermentum IFO 3956 6232176 YP_001842903.1 CDS LAF_0087 NC_010610.1 111353 112123 D exopolysaccharide biosynthesis protein 111353..112123 Lactobacillus fermentum IFO 3956 6232177 YP_001842904.1 CDS LAF_0088 NC_010610.1 112240 112791 D capsular polysaccharide synthesis protein 112240..112791 Lactobacillus fermentum IFO 3956 6232178 YP_001842905.1 CDS LAF_0089 NC_010610.1 112815 113669 D glycosyltransferase 112815..113669 Lactobacillus fermentum IFO 3956 6232179 YP_001842906.1 CDS LAF_0090 NC_010610.1 113686 114498 D hypothetical protein 113686..114498 Lactobacillus fermentum IFO 3956 6232180 YP_001842907.1 CDS LAF_0091 NC_010610.1 114518 115753 D hypothetical protein 114518..115753 Lactobacillus fermentum IFO 3956 6232181 YP_001842908.1 CDS LAF_0092 NC_010610.1 115750 116751 D hypothetical protein 115750..116751 Lactobacillus fermentum IFO 3956 6232182 YP_001842909.1 CDS LAF_0093 NC_010610.1 116768 117871 D hypothetical protein 116768..117871 Lactobacillus fermentum IFO 3956 6232183 YP_001842910.1 CDS LAF_0094 NC_010610.1 117881 118753 D glycosyltransferases 117881..118753 Lactobacillus fermentum IFO 3956 6232184 YP_001842911.1 CDS LAF_0095 NC_010610.1 118758 120266 D flippase 118758..120266 Lactobacillus fermentum IFO 3956 6232185 YP_001842912.1 CDS LAF_0096 NC_010610.1 120285 121154 D glucose-1-phosphate thymidylyltransferase 120285..121154 Lactobacillus fermentum IFO 3956 6232186 YP_001842913.1 CDS LAF_0097 NC_010610.1 121158 121739 D dTDP-4-dehydrorhamnose 3,5-epimerase 121158..121739 Lactobacillus fermentum IFO 3956 6232187 YP_001842914.1 CDS LAF_0098 NC_010610.1 121750 122781 D dTDP-glucose 4,6-dehydratase 121750..122781 Lactobacillus fermentum IFO 3956 6232188 YP_001842915.1 CDS LAF_0099 NC_010610.1 122844 123701 D dTDP-4-dehydrorhamnose reductase 122844..123701 Lactobacillus fermentum IFO 3956 6232189 YP_001842916.1 CDS LAF_0100 NC_010610.1 124005 125225 D transposase 124005..125225 Lactobacillus fermentum IFO 3956 6232190 YP_001842917.1 CDS LAF_0101 NC_010610.1 126283 127491 R hypothetical protein complement(126283..127491) Lactobacillus fermentum IFO 3956 6232191 YP_001842918.1 CDS LAF_0102 NC_010610.1 127627 127902 D hypothetical protein 127627..127902 Lactobacillus fermentum IFO 3956 6232192 YP_001842919.1 CDS LAF_0103 NC_010610.1 127906 128106 D hypothetical protein 127906..128106 Lactobacillus fermentum IFO 3956 6232193 YP_001842920.1 CDS LAF_0104 NC_010610.1 128347 129072 D hypothetical protein 128347..129072 Lactobacillus fermentum IFO 3956 6232194 YP_001842921.1 CDS LAF_0105 NC_010610.1 129815 130177 R hypothetical protein complement(129815..130177) Lactobacillus fermentum IFO 3956 6232195 YP_001842922.1 CDS LAF_0106 NC_010610.1 130825 131331 R hypothetical protein complement(130825..131331) Lactobacillus fermentum IFO 3956 6232196 YP_001842923.1 CDS LAF_0107 NC_010610.1 131528 132217 D two-component response regulator 131528..132217 Lactobacillus fermentum IFO 3956 6232197 YP_001842924.1 CDS LAF_0108 NC_010610.1 132415 133557 D two-component system histidine kinase 132415..133557 Lactobacillus fermentum IFO 3956 6232198 YP_001842925.1 CDS LAF_0109 NC_010610.1 133617 134852 D D-alanyl-D-alanine 133617..134852 Lactobacillus fermentum IFO 3956 6232600 YP_001842926.1 CDS LAF_0110 NC_010610.1 135068 135928 D branched-chain amino acid transporter 135068..135928 Lactobacillus fermentum IFO 3956 6232601 YP_001842927.1 CDS LAF_0111 NC_010610.1 135983 136357 D hypothetical protein 135983..136357 Lactobacillus fermentum IFO 3956 6232266 YP_001842928.1 CDS LAF_0112 NC_010610.1 136470 136730 D hypothetical protein 136470..136730 Lactobacillus fermentum IFO 3956 6232943 YP_001842929.1 CDS LAF_0113 NC_010610.1 136730 137077 D hypothetical protein 136730..137077 Lactobacillus fermentum IFO 3956 6232944 YP_001842930.1 CDS LAF_0114 NC_010610.1 137087 137635 D hypothetical protein 137087..137635 Lactobacillus fermentum IFO 3956 6232945 YP_001842931.1 CDS LAF_0115 NC_010610.1 137911 139098 R cyclopropane-fatty-acyl-phospholipid synthase complement(137911..139098) Lactobacillus fermentum IFO 3956 6232946 YP_001842932.1 CDS LAF_0116 NC_010610.1 139441 140481 D hypothetical protein 139441..140481 Lactobacillus fermentum IFO 3956 6232947 YP_001842933.1 CDS LAF_0117 NC_010610.1 140569 142230 D catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 140569..142230 Lactobacillus fermentum IFO 3956 6232948 YP_001842934.1 CDS LAF_0118 NC_010610.1 142517 143002 D phosphoribosylaminoimidazole carboxylase catalytic subunit 142517..143002 Lactobacillus fermentum IFO 3956 6232949 YP_001842935.1 CDS LAF_0119 NC_010610.1 142986 144125 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 142986..144125 Lactobacillus fermentum IFO 3956 6232950 YP_001842936.1 CDS LAF_0120 NC_010610.1 144144 145439 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 144144..145439 Lactobacillus fermentum IFO 3956 6232951 YP_001842937.1 CDS LAF_0121 NC_010610.1 145782 146822 D hypothetical protein 145782..146822 Lactobacillus fermentum IFO 3956 6232952 YP_001842938.1 CDS LAF_0122 NC_010610.1 146834 148384 D hypothetical protein 146834..148384 Lactobacillus fermentum IFO 3956 6232953 YP_001842939.1 CDS LAF_0123 NC_010610.1 148685 148900 R hypothetical protein complement(148685..148900) Lactobacillus fermentum IFO 3956 6232954 YP_001842940.1 CDS LAF_0124 NC_010610.1 149463 150185 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 149463..150185 Lactobacillus fermentum IFO 3956 6232955 YP_001842941.1 CDS LAF_0125 NC_010610.1 150188 150430 D phosphoribosylformylglycinamidine synthase 150188..150430 Lactobacillus fermentum IFO 3956 6232956 YP_001842942.1 CDS LAF_0126 NC_010610.1 150431 151111 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 150431..151111 Lactobacillus fermentum IFO 3956 6232957 YP_001842943.1 CDS LAF_0127 NC_010610.1 151115 153340 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 151115..153340 Lactobacillus fermentum IFO 3956 6232958 YP_001842944.1 CDS LAF_0128 NC_010610.1 153316 154779 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 153316..154779 Lactobacillus fermentum IFO 3956 6232959 YP_001842945.1 CDS LAF_0129 NC_010610.1 154779 155816 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 154779..155816 Lactobacillus fermentum IFO 3956 6232602 YP_001842946.1 CDS LAF_0130 NC_010610.1 155825 156406 D phosphoribosylglycinamide formyltransferase 155825..156406 Lactobacillus fermentum IFO 3956 6232603 YP_001842947.1 CDS purH NC_010610.1 156390 157943 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 156390..157943 Lactobacillus fermentum IFO 3956 6232604 YP_001842948.1 CDS LAF_0132 NC_010610.1 158217 159470 D phosphoribosylamine-glycine ligase 158217..159470 Lactobacillus fermentum IFO 3956 6232605 YP_001842949.1 CDS LAF_0133 NC_010610.1 159716 160879 R transposase complement(159716..160879) Lactobacillus fermentum IFO 3956 6232606 YP_001842950.1 CDS LAF_0134 NC_010610.1 160876 161313 R transposase complement(160876..161313) Lactobacillus fermentum IFO 3956 6232607 YP_001842951.1 CDS gpmA NC_010610.1 161528 162223 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 161528..162223 Lactobacillus fermentum IFO 3956 6232608 YP_001842952.1 CDS LAF_0136 NC_010610.1 162347 163525 D aminotransferase 162347..163525 Lactobacillus fermentum IFO 3956 6232609 YP_001842953.1 CDS LAF_0137 NC_010610.1 163638 164642 D hypothetical protein 163638..164642 Lactobacillus fermentum IFO 3956 6233410 YP_001842954.1 CDS LAF_0138 NC_010610.1 165128 165499 D hypothetical protein 165128..165499 Lactobacillus fermentum IFO 3956 6233411 YP_001842955.1 CDS LAF_0139 NC_010610.1 165513 165821 D hypothetical protein 165513..165821 Lactobacillus fermentum IFO 3956 6233412 YP_001842956.1 CDS LAF_0140 NC_010610.1 165821 167752 D cation-transporting ATPase 165821..167752 Lactobacillus fermentum IFO 3956 6233413 YP_001842957.1 CDS LAF_0141 NC_010610.1 168349 168825 R hypothetical protein complement(168349..168825) Lactobacillus fermentum IFO 3956 6233414 YP_001842958.1 CDS LAF_0142 NC_010610.1 174750 175406 D nitroreductase 174750..175406 Lactobacillus fermentum IFO 3956 6232384 YP_001842959.1 CDS LAF_0143 NC_010610.1 175412 175972 D hydrolase 175412..175972 Lactobacillus fermentum IFO 3956 6233416 YP_001842960.1 CDS LAF_0144 NC_010610.1 175959 176636 D hypothetical protein 175959..176636 Lactobacillus fermentum IFO 3956 6233417 YP_001842961.1 CDS LAF_0145 NC_010610.1 177168 177476 D hypothetical protein 177168..177476 Lactobacillus fermentum IFO 3956 6233418 YP_001842962.1 CDS LAF_0146 NC_010610.1 178958 179542 D transport protein 178958..179542 Lactobacillus fermentum IFO 3956 6233419 YP_001842963.1 CDS LAF_0147 NC_010610.1 179594 179815 R hypothetical protein complement(179594..179815) Lactobacillus fermentum IFO 3956 6233420 YP_001842964.1 CDS LAF_0148 NC_010610.1 179983 180321 D hypothetical protein 179983..180321 Lactobacillus fermentum IFO 3956 6233421 YP_001842965.1 CDS LAF_0149 NC_010610.1 181934 183457 R hypothetical protein complement(181934..183457) Lactobacillus fermentum IFO 3956 6233422 YP_001842966.1 CDS LAF_0150 NC_010610.1 183629 185494 D hypothetical protein 183629..185494 Lactobacillus fermentum IFO 3956 6233423 YP_001842967.1 CDS LAF_0151 NC_010610.1 185484 186275 D hypothetical protein 185484..186275 Lactobacillus fermentum IFO 3956 6233424 YP_001842968.1 CDS LAF_0152 NC_010610.1 186290 187168 D iron ABC transporter substrate-binding protein 186290..187168 Lactobacillus fermentum IFO 3956 6233425 YP_001842969.1 CDS LAF_0153 NC_010610.1 187170 188096 D iron ABC transporter permease 187170..188096 Lactobacillus fermentum IFO 3956 6233426 YP_001842970.1 CDS LAF_0154 NC_010610.1 188080 188850 D iron ABC transporter ATP-binding protein 188080..188850 Lactobacillus fermentum IFO 3956 6233427 YP_001842971.1 CDS LAF_0155 NC_010610.1 189087 190391 R transporter protein complement(189087..190391) Lactobacillus fermentum IFO 3956 6233428 YP_001842972.1 CDS LAF_0156 NC_010610.1 191023 191580 D hypothetical protein 191023..191580 Lactobacillus fermentum IFO 3956 6233429 YP_001842973.1 CDS LAF_0157 NC_010610.1 191513 192139 D hypothetical protein 191513..192139 Lactobacillus fermentum IFO 3956 6233430 YP_001842974.1 CDS LAF_0158 NC_010610.1 192271 193110 D exodeoxyribonuclease 192271..193110 Lactobacillus fermentum IFO 3956 6233431 YP_001842975.1 CDS LAF_0159 NC_010610.1 198915 199886 D phosphoglycerate dehydrogenase 198915..199886 Lactobacillus fermentum IFO 3956 6232378 YP_001842976.1 CDS LAF_0160 NC_010610.1 203131 204402 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 203131..204402 Lactobacillus fermentum IFO 3956 6233433 YP_001842977.1 CDS LAF_0161 NC_010610.1 204351 205337 R transposase complement(204351..205337) Lactobacillus fermentum IFO 3956 6233434 YP_001842978.1 CDS LAF_0162 NC_010610.1 205460 205990 D hypothetical protein 205460..205990 Lactobacillus fermentum IFO 3956 6233435 YP_001842979.1 CDS LAF_0163 NC_010610.1 206275 207339 D ureidoglycolate dehydrogenase 206275..207339 Lactobacillus fermentum IFO 3956 6233436 YP_001842980.1 CDS LAF_0164 NC_010610.1 207410 207592 D hypothetical protein 207410..207592 Lactobacillus fermentum IFO 3956 6233437 YP_001842981.1 CDS rihA NC_010610.1 207703 208641 D Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil, respectively; pyrimidine-specific; ribonucleoside hydrolase 1 207703..208641 Lactobacillus fermentum IFO 3956 6233438 YP_001842982.1 CDS LAF_0166 NC_010610.1 208718 209365 D nitroreductase 208718..209365 Lactobacillus fermentum IFO 3956 6233439 YP_001842983.1 CDS LAF_0167 NC_010610.1 209375 210106 D hypothetical protein 209375..210106 Lactobacillus fermentum IFO 3956 6233440 YP_001842984.1 CDS LAF_0168 NC_010610.1 210075 210431 D hypothetical protein 210075..210431 Lactobacillus fermentum IFO 3956 6233441 YP_001842985.1 CDS LAF_0169 NC_010610.1 210556 211596 D alcohol dehydrogenase 210556..211596 Lactobacillus fermentum IFO 3956 6233442 YP_001842986.1 CDS LAF_0170 NC_010610.1 211799 214324 R aminopeptidase N complement(211799..214324) Lactobacillus fermentum IFO 3956 6233443 YP_001842987.1 CDS LAF_0171 NC_010610.1 214586 214951 R oxidoreductase complement(214586..214951) Lactobacillus fermentum IFO 3956 6233444 YP_001842988.1 CDS LAF_0172 NC_010610.1 215058 215969 D transcription regulator 215058..215969 Lactobacillus fermentum IFO 3956 6233445 YP_001842989.1 CDS LAF_0173 NC_010610.1 215999 216544 D hypothetical protein 215999..216544 Lactobacillus fermentum IFO 3956 6233446 YP_001842990.1 CDS LAF_0174 NC_010610.1 216612 217376 D nitroreductase 216612..217376 Lactobacillus fermentum IFO 3956 6233447 YP_001842991.1 CDS LAF_0175 NC_010610.1 217742 218194 R transposase complement(217742..218194) Lactobacillus fermentum IFO 3956 6232385 YP_001842992.1 CDS LAF_0176 NC_010610.1 218273 219523 D transposase 218273..219523 Lactobacillus fermentum IFO 3956 6233449 YP_001842993.1 CDS LAF_0177 NC_010610.1 219712 220560 D amino acid ABC transporter substrate-binding protein 219712..220560 Lactobacillus fermentum IFO 3956 6233450 YP_001842994.1 CDS LAF_0178 NC_010610.1 220703 221866 D Na-H antiporter 220703..221866 Lactobacillus fermentum IFO 3956 6233451 YP_001842995.1 CDS LAF_0179 NC_010610.1 221909 224230 R DNA helicase complement(221909..224230) Lactobacillus fermentum IFO 3956 6233452 YP_001842996.1 CDS LAF_0180 NC_010610.1 224430 225368 D exopolyphosphatase 224430..225368 Lactobacillus fermentum IFO 3956 6233453 YP_001842997.1 CDS LAF_0181 NC_010610.1 225361 226638 D hydroxymethylglutaryl-CoA reductase 225361..226638 Lactobacillus fermentum IFO 3956 6233454 YP_001842998.1 CDS LAF_0182 NC_010610.1 226619 227602 D hypothetical protein 226619..227602 Lactobacillus fermentum IFO 3956 6233455 YP_001842999.1 CDS LAF_0183 NC_010610.1 227605 228303 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 227605..228303 Lactobacillus fermentum IFO 3956 6233456 YP_001843000.1 CDS LAF_0184 NC_010610.1 228519 229694 D multidrug transport protein 228519..229694 Lactobacillus fermentum IFO 3956 6233457 YP_001843001.1 CDS LAF_0185 NC_010610.1 229750 230592 D hypothetical protein 229750..230592 Lactobacillus fermentum IFO 3956 6233458 YP_001843002.1 CDS LAF_0186 NC_010610.1 230693 232693 D methionyl-tRNA synthase 230693..232693 Lactobacillus fermentum IFO 3956 6233459 YP_001843003.1 CDS LAF_0187 NC_010610.1 232697 233485 D DNase 232697..233485 Lactobacillus fermentum IFO 3956 6233460 YP_001843004.1 CDS LAF_0188 NC_010610.1 233472 234041 D hypothetical protein 233472..234041 Lactobacillus fermentum IFO 3956 6233461 YP_001843005.1 CDS ksgA NC_010610.1 234034 234921 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 234034..234921 Lactobacillus fermentum IFO 3956 6233462 YP_001843006.1 CDS ipk NC_010610.1 235201 236052 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 235201..236052 Lactobacillus fermentum IFO 3956 6233463 YP_001843007.1 CDS LAF_0191 NC_010610.1 236227 237135 D zinc/iron ABC transporter substrate-binding protein 236227..237135 Lactobacillus fermentum IFO 3956 6233464 YP_001843008.1 CDS LAF_0192 NC_010610.1 237240 237803 D zinc/iron ABC transporter ATP-binding protein 237240..237803 Lactobacillus fermentum IFO 3956 6233465 YP_001843009.1 CDS LAF_0193 NC_010610.1 237803 238597 D zinc/iron ABC transporter permease 237803..238597 Lactobacillus fermentum IFO 3956 6233466 YP_001843010.1 CDS LAF_0194 NC_010610.1 238822 239658 D pur operon repressor 238822..239658 Lactobacillus fermentum IFO 3956 6233467 YP_001843011.1 CDS glmU NC_010610.1 239674 241041 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 239674..241041 Lactobacillus fermentum IFO 3956 6233468 YP_001843012.1 CDS LAF_0196 NC_010610.1 241117 242103 D ribose-phosphate pyrophosphokinase 241117..242103 Lactobacillus fermentum IFO 3956 6233469 YP_001843013.1 CDS LAF_0197 NC_010610.1 242213 242941 D hypothetical protein 242213..242941 Lactobacillus fermentum IFO 3956 6233470 YP_001843014.1 CDS LAF_0198 NC_010610.1 243118 243939 R hydrolase complement(243118..243939) Lactobacillus fermentum IFO 3956 6233471 YP_001843015.1 CDS LAF_0199 NC_010610.1 243951 245306 R hypothetical protein complement(243951..245306) Lactobacillus fermentum IFO 3956 6233472 YP_001843016.1 CDS LAF_0200 NC_010610.1 245421 245846 D hypothetical protein 245421..245846 Lactobacillus fermentum IFO 3956 6233473 YP_001843017.1 CDS LAF_0201 NC_010610.1 245892 246479 D participates in both the initiation and recycling phases of transcription; in the presence of the subunit delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 245892..246479 Lactobacillus fermentum IFO 3956 6233474 YP_001843018.1 CDS pyrG NC_010610.1 246646 248247 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 246646..248247 Lactobacillus fermentum IFO 3956 6233475 YP_001843019.1 CDS LAF_0203 NC_010610.1 248458 249726 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 248458..249726 Lactobacillus fermentum IFO 3956 6233476 YP_001843020.1 CDS rpmE2 NC_010610.1 249821 250066 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 249821..250066 Lactobacillus fermentum IFO 3956 6233477 YP_001843021.1 CDS LAF_0205 NC_010610.1 250797 251501 D sortase 250797..251501 Lactobacillus fermentum IFO 3956 6233478 YP_001843022.1 CDS LAF_0206 NC_010610.1 252185 252742 D hypothetical protein 252185..252742 Lactobacillus fermentum IFO 3956 6233479 YP_001843023.1 CDS LAF_0207 NC_010610.1 252753 253652 D metalloprotease; heat shock protein HtpX 252753..253652 Lactobacillus fermentum IFO 3956 6233480 YP_001843024.1 CDS LAF_0208 NC_010610.1 253827 255206 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase 253827..255206 Lactobacillus fermentum IFO 3956 6233481 YP_001843025.1 CDS LAF_0209 NC_010610.1 255377 256855 D ATP-dependent RNA helicase 255377..256855 Lactobacillus fermentum IFO 3956 6233482 YP_001843026.1 CDS LAF_0210 NC_010610.1 256859 257218 D holo-[acyl-carrier protein] synthase 256859..257218 Lactobacillus fermentum IFO 3956 6233483 YP_001843027.1 CDS LAF_0211 NC_010610.1 257221 258342 D alanine racemase 257221..258342 Lactobacillus fermentum IFO 3956 6233484 YP_001843028.1 CDS LAF_0212 NC_010610.1 258348 258707 D hypothetical protein 258348..258707 Lactobacillus fermentum IFO 3956 6233485 YP_001843029.1 CDS LAF_0213 NC_010610.1 258840 259475 R hypothetical protein complement(258840..259475) Lactobacillus fermentum IFO 3956 6233486 YP_001843030.1 CDS LAF_0214 NC_010610.1 259663 260223 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 259663..260223 Lactobacillus fermentum IFO 3956 6233487 YP_001843031.1 CDS LAF_0215 NC_010610.1 260241 263783 D transcription-repair coupling factor 260241..263783 Lactobacillus fermentum IFO 3956 6233488 YP_001843032.1 CDS LAF_0216 NC_010610.1 263780 264052 D hypothetical protein 263780..264052 Lactobacillus fermentum IFO 3956 6233489 YP_001843033.1 CDS LAF_0217 NC_010610.1 264141 264497 D hypothetical protein 264141..264497 Lactobacillus fermentum IFO 3956 6233490 YP_001843034.1 CDS LAF_0218 NC_010610.1 264626 265132 D RNA binding protein 264626..265132 Lactobacillus fermentum IFO 3956 6233491 YP_001843035.1 CDS LAF_0219 NC_010610.1 265132 266481 D cell cycle protein 265132..266481 Lactobacillus fermentum IFO 3956 6232610 YP_001843036.1 CDS LAF_0220 NC_010610.1 266498 267046 D hypoxanthine-guanine phosphoribosyltransferase 266498..267046 Lactobacillus fermentum IFO 3956 6232611 YP_001843037.1 CDS LAF_0221 NC_010610.1 267130 269298 D cell division protein FtsH 267130..269298 Lactobacillus fermentum IFO 3956 6232612 YP_001843038.1 CDS hslO NC_010610.1 269380 270261 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 269380..270261 Lactobacillus fermentum IFO 3956 6232613 YP_001843039.1 CDS LAF_0223 NC_010610.1 270350 271351 D hypothetical protein 270350..271351 Lactobacillus fermentum IFO 3956 6232614 YP_001843040.1 CDS LAF_0224 NC_010610.1 271367 272860 D lysyl-tRNA synthase 271367..272860 Lactobacillus fermentum IFO 3956 6233328 YP_001843041.1 CDS LAF_0225 NC_010610.1 281848 282612 D hypothetical protein 281848..282612 Lactobacillus fermentum IFO 3956 6232389 YP_001843042.1 CDS LAF_0226 NC_010610.1 285332 285574 R hypothetical protein complement(285332..285574) Lactobacillus fermentum IFO 3956 6233330 YP_001843043.1 CDS LAF_0227 NC_010610.1 286074 286640 R hypothetical protein complement(286074..286640) Lactobacillus fermentum IFO 3956 6233331 YP_001843044.1 CDS LAF_0228 NC_010610.1 289237 290061 R hypothetical protein complement(289237..290061) Lactobacillus fermentum IFO 3956 6233332 YP_001843045.1 CDS LAF_0229 NC_010610.1 290720 290986 R hypothetical protein complement(290720..290986) Lactobacillus fermentum IFO 3956 6233333 YP_001843046.1 CDS LAF_0230 NC_010610.1 291300 292412 D hypothetical protein 291300..292412 Lactobacillus fermentum IFO 3956 6233334 YP_001843047.1 CDS LAF_0231 NC_010610.1 292530 293633 D integrase 292530..293633 Lactobacillus fermentum IFO 3956 6233335 YP_001843048.1 CDS LAF_0232 NC_010610.1 295677 296621 R L-2-hydroxyisocaproate dehydrogenase complement(295677..296621) Lactobacillus fermentum IFO 3956 6233336 YP_001843049.1 CDS LAF_0233 NC_010610.1 296654 297463 R 2-oxo-hept-3-ene-1,7-dioate hydratase complement(296654..297463) Lactobacillus fermentum IFO 3956 6233337 YP_001843050.1 CDS LAF_0234 NC_010610.1 297654 298988 R transport protein complement(297654..298988) Lactobacillus fermentum IFO 3956 6233338 YP_001843051.1 CDS LAF_0235 NC_010610.1 299427 299834 D transposase 299427..299834 Lactobacillus fermentum IFO 3956 6233339 YP_001843052.1 CDS LAF_0236 NC_010610.1 299834 301009 D transposase 299834..301009 Lactobacillus fermentum IFO 3956 6233340 YP_001843053.1 CDS LAF_0237 NC_010610.1 301213 303441 D hypothetical protein 301213..303441 Lactobacillus fermentum IFO 3956 6233341 YP_001843054.1 CDS LAF_0238 NC_010610.1 303674 305170 D dipeptide/tripeptide transport protein 303674..305170 Lactobacillus fermentum IFO 3956 6233342 YP_001843055.1 CDS LAF_0239 NC_010610.1 305264 306109 D hypothetical protein 305264..306109 Lactobacillus fermentum IFO 3956 6233343 YP_001843056.1 CDS LAF_0240 NC_010610.1 306403 307047 D hypothetical protein 306403..307047 Lactobacillus fermentum IFO 3956 6232391 YP_001843057.1 CDS LAF_0241 NC_010610.1 307130 307843 D aspartate racemase 307130..307843 Lactobacillus fermentum IFO 3956 6233345 YP_001843058.1 CDS LAF_0242 NC_010610.1 307999 308700 D transcription regulator 307999..308700 Lactobacillus fermentum IFO 3956 6233346 YP_001843059.1 CDS LAF_0243 NC_010610.1 308731 310191 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 308731..310191 Lactobacillus fermentum IFO 3956 6233347 YP_001843060.1 CDS nadE NC_010610.1 310208 311038 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 310208..311038 Lactobacillus fermentum IFO 3956 6233348 YP_001843061.1 CDS LAF_0245 NC_010610.1 311042 313219 D hypothetical protein 311042..313219 Lactobacillus fermentum IFO 3956 6233349 YP_001843062.1 CDS LAF_0246 NC_010610.1 313212 313667 D hypothetical protein 313212..313667 Lactobacillus fermentum IFO 3956 6233350 YP_001843063.1 CDS LAF_0247 NC_010610.1 313954 315834 D beta-galactosidase large subunit 313954..315834 Lactobacillus fermentum IFO 3956 6232392 YP_001843064.1 CDS LAF_0248 NC_010610.1 315818 316780 D beta-galactosidase small subunit 315818..316780 Lactobacillus fermentum IFO 3956 6233352 YP_001843065.1 CDS LAF_0249 NC_010610.1 316923 317879 D malate transport protein 316923..317879 Lactobacillus fermentum IFO 3956 6233353 YP_001843066.1 CDS LAF_0250 NC_010610.1 318167 318844 D phosphoglycerate mutase 318167..318844 Lactobacillus fermentum IFO 3956 6233354 YP_001843067.1 CDS LAF_0251 NC_010610.1 318848 319723 D hypothetical protein 318848..319723 Lactobacillus fermentum IFO 3956 6233355 YP_001843068.1 CDS LAF_0252 NC_010610.1 320040 321377 R aminopeptidase C complement(320040..321377) Lactobacillus fermentum IFO 3956 6233356 YP_001843069.1 CDS LAF_0253 NC_010610.1 321441 322055 R galactoside O-acetyltransferase complement(321441..322055) Lactobacillus fermentum IFO 3956 6233357 YP_001843070.1 CDS LAF_0254 NC_010610.1 322083 322769 R ribose 5-phosphate isomerase complement(322083..322769) Lactobacillus fermentum IFO 3956 6233358 YP_001843071.1 CDS LAF_0255 NC_010610.1 322781 323092 R acetyltransferase complement(322781..323092) Lactobacillus fermentum IFO 3956 6233359 YP_001843072.1 CDS LAF_0256 NC_010610.1 323292 323831 D dUTPase 323292..323831 Lactobacillus fermentum IFO 3956 6233360 YP_001843073.1 CDS LAF_0257 NC_010610.1 323844 325217 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 323844..325217 Lactobacillus fermentum IFO 3956 6233361 YP_001843074.1 CDS LAF_0258 NC_010610.1 325250 326383 D hypothetical protein 325250..326383 Lactobacillus fermentum IFO 3956 6233362 YP_001843075.1 CDS LAF_0259 NC_010610.1 326454 327950 D glutamyl-tRNA synthase 326454..327950 Lactobacillus fermentum IFO 3956 6233363 YP_001843076.1 CDS LAF_0260 NC_010610.1 328018 328587 D hypothetical protein 328018..328587 Lactobacillus fermentum IFO 3956 6233364 YP_001843077.1 CDS cysS NC_010610.1 328935 330353 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 328935..330353 Lactobacillus fermentum IFO 3956 6233365 YP_001843078.1 CDS LAF_0262 NC_010610.1 330360 330773 D hypothetical protein 330360..330773 Lactobacillus fermentum IFO 3956 6233366 YP_001843079.1 CDS LAF_0263 NC_010610.1 330763 331518 D RNA methyltransferase 330763..331518 Lactobacillus fermentum IFO 3956 6233367 YP_001843080.1 CDS LAF_0264 NC_010610.1 331757 332335 D RNA polymerase sigma-30 factor 331757..332335 Lactobacillus fermentum IFO 3956 6233368 YP_001843081.1 CDS LAF_0265 NC_010610.1 332400 332546 D 50S ribosomal protein L33 332400..332546 Lactobacillus fermentum IFO 3956 6233369 YP_001843082.1 CDS secE NC_010610.1 332561 332737 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 332561..332737 Lactobacillus fermentum IFO 3956 6233370 YP_001843083.1 CDS LAF_0267 NC_010610.1 332846 333391 D transcription antitermination protein 332846..333391 Lactobacillus fermentum IFO 3956 6233371 YP_001843084.1 CDS rplK NC_010610.1 333511 333936 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 333511..333936 Lactobacillus fermentum IFO 3956 6233372 YP_001843085.1 CDS rplA NC_010610.1 334030 334722 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 334030..334722 Lactobacillus fermentum IFO 3956 6233373 YP_001843086.1 CDS LAF_0270 NC_010610.1 334870 336198 R amino acid transporter complement(334870..336198) Lactobacillus fermentum IFO 3956 6233374 YP_001843087.1 CDS rplJ NC_010610.1 336575 337078 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 336575..337078 Lactobacillus fermentum IFO 3956 6233375 YP_001843088.1 CDS rplL NC_010610.1 337147 337512 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 337147..337512 Lactobacillus fermentum IFO 3956 6233376 YP_001843089.1 CDS LAF_0273 NC_010610.1 337956 339392 D cytochrome D ubiquinol oxidase subunit I 337956..339392 Lactobacillus fermentum IFO 3956 6233377 YP_001843090.1 CDS LAF_0274 NC_010610.1 339394 340410 D cytochrome D ubiquinol oxidase subunit II 339394..340410 Lactobacillus fermentum IFO 3956 6233378 YP_001843091.1 CDS LAF_0275 NC_010610.1 340410 342140 D cytochrome D ABC transporter ATP-binding and permease components 340410..342140 Lactobacillus fermentum IFO 3956 6233379 YP_001843092.1 CDS LAF_0276 NC_010610.1 342130 343881 D cytochrome D ABC transporter ATP-binding and permease components 342130..343881 Lactobacillus fermentum IFO 3956 6233380 YP_001843093.1 CDS LAF_0277 NC_010610.1 344360 346963 D bifunctional acetaldehyde-CoA/alcohol dehydrogenase 344360..346963 Lactobacillus fermentum IFO 3956 6233381 YP_001843094.1 CDS LAF_0278 NC_010610.1 347490 348869 D branched-chain amino acid transporter 347490..348869 Lactobacillus fermentum IFO 3956 6233382 YP_001843095.1 CDS nrdF NC_010610.1 348958 349959 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(348958..349959) Lactobacillus fermentum IFO 3956 6233383 YP_001843096.1 CDS LAF_0280 NC_010610.1 350021 352192 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(350021..352192) Lactobacillus fermentum IFO 3956 6233384 YP_001843097.1 CDS LAF_0281 NC_010610.1 352292 352513 R glutaredoxin complement(352292..352513) Lactobacillus fermentum IFO 3956 6233385 YP_001843098.1 CDS LAF_0282 NC_010610.1 352770 353294 D cytosine/adenosine deaminase 352770..353294 Lactobacillus fermentum IFO 3956 6233386 YP_001843099.1 CDS LAF_0283 NC_010610.1 353550 355241 D DNA-directed DNA polymerase III gamma/tau subunit 353550..355241 Lactobacillus fermentum IFO 3956 6233387 YP_001843100.1 CDS LAF_0284 NC_010610.1 355264 355572 D hypothetical protein 355264..355572 Lactobacillus fermentum IFO 3956 6233388 YP_001843101.1 CDS recR NC_010610.1 355588 356187 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 355588..356187 Lactobacillus fermentum IFO 3956 6233389 YP_001843102.1 CDS LAF_0286 NC_010610.1 356189 356437 D hypothetical protein 356189..356437 Lactobacillus fermentum IFO 3956 6233390 YP_001843103.1 CDS tmk NC_010610.1 356457 357101 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 356457..357101 Lactobacillus fermentum IFO 3956 6233391 YP_001843104.1 CDS LAF_0288 NC_010610.1 357114 357434 D hypothetical protein 357114..357434 Lactobacillus fermentum IFO 3956 6233392 YP_001843105.1 CDS LAF_0289 NC_010610.1 357452 358492 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the subunit gamma to transfer the subunit beta on the DNA; DNA polymerase III subunit delta' 357452..358492 Lactobacillus fermentum IFO 3956 6233393 YP_001843106.1 CDS LAF_0290 NC_010610.1 358485 358820 D hypothetical protein 358485..358820 Lactobacillus fermentum IFO 3956 6233394 YP_001843107.1 CDS LAF_0291 NC_010610.1 358823 359683 D methyltransferase 358823..359683 Lactobacillus fermentum IFO 3956 6233395 YP_001843108.1 CDS LAF_0292 NC_010610.1 359703 360458 D hypothetical protein 359703..360458 Lactobacillus fermentum IFO 3956 6233396 YP_001843109.1 CDS LAF_0293 NC_010610.1 360578 362089 D exopolyphosphatase 360578..362089 Lactobacillus fermentum IFO 3956 6233397 YP_001843110.1 CDS LAF_0294 NC_010610.1 362090 364318 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 362090..364318 Lactobacillus fermentum IFO 3956 6233398 YP_001843111.1 CDS LAF_0295 NC_010610.1 364332 365285 D exopolyphosphatase 364332..365285 Lactobacillus fermentum IFO 3956 6233399 YP_001843112.1 CDS LAF_0296 NC_010610.1 365375 366370 D UDP-glucose 4-epimerase 365375..366370 Lactobacillus fermentum IFO 3956 6233400 YP_001843113.1 CDS LAF_0297 NC_010610.1 366591 367442 R two-component response regulator complement(366591..367442) Lactobacillus fermentum IFO 3956 6233401 YP_001843114.1 CDS LAF_0298 NC_010610.1 367930 368931 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 367930..368931 Lactobacillus fermentum IFO 3956 6233402 YP_001843115.1 CDS LAF_0299 NC_010610.1 368947 369876 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 368947..369876 Lactobacillus fermentum IFO 3956 6233403 YP_001843116.1 CDS LAF_0300 NC_010610.1 369937 371160 D catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 369937..371160 Lactobacillus fermentum IFO 3956 6233404 YP_001843117.1 CDS LAF_0301 NC_010610.1 371281 372699 D arginine-ornithine antiporter 371281..372699 Lactobacillus fermentum IFO 3956 6233405 YP_001843118.1 CDS LAF_0302 NC_010610.1 372850 373971 R hypothetical protein complement(372850..373971) Lactobacillus fermentum IFO 3956 6233406 YP_001843119.1 CDS LAF_0303 NC_010610.1 374435 375553 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 374435..375553 Lactobacillus fermentum IFO 3956 6233407 YP_001843120.1 CDS LAF_0304 NC_010610.1 375624 376355 D glycoprotein endopeptidase 375624..376355 Lactobacillus fermentum IFO 3956 6233408 YP_001843121.1 CDS LAF_0305 NC_010610.1 376345 376944 D hypothetical protein 376345..376944 Lactobacillus fermentum IFO 3956 6233409 YP_001843122.1 CDS LAF_0306 NC_010610.1 376913 377947 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 376913..377947 Lactobacillus fermentum IFO 3956 6232960 YP_001843123.1 CDS LAF_0307 NC_010610.1 378223 378462 D hypothetical protein 378223..378462 Lactobacillus fermentum IFO 3956 6232411 YP_001843124.1 CDS LAF_0308 NC_010610.1 378825 379280 D (3R)-hydroxymyristoyl-ACP dehydratase 378825..379280 Lactobacillus fermentum IFO 3956 6232412 YP_001843125.1 CDS LAF_0309 NC_010610.1 379356 379796 D transcriptional regulator 379356..379796 Lactobacillus fermentum IFO 3956 6233059 YP_001843126.1 CDS LAF_0310 NC_010610.1 379820 380779 D 3-oxoacyl-ACP synthase III 379820..380779 Lactobacillus fermentum IFO 3956 6233060 YP_001843127.1 CDS acpP NC_010610.1 380808 381056 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 380808..381056 Lactobacillus fermentum IFO 3956 6233061 YP_001843128.1 CDS LAF_0312 NC_010610.1 381056 382003 D malonyl CoA-acyl carrier protein transacylase 381056..382003 Lactobacillus fermentum IFO 3956 6233062 YP_001843129.1 CDS LAF_0313 NC_010610.1 381987 382718 D 3-oxoacyl-[acyl-carrier protein] reductase 381987..382718 Lactobacillus fermentum IFO 3956 6233063 YP_001843130.1 CDS LAF_0314 NC_010610.1 382731 383969 D 3-oxoacyl-[acyl-carrier protein] synthase II 382731..383969 Lactobacillus fermentum IFO 3956 6233064 YP_001843131.1 CDS LAF_0315 NC_010610.1 383972 384418 D acetyl-CoA carboxylase biotin carboxyl carrier protein 383972..384418 Lactobacillus fermentum IFO 3956 6233065 YP_001843132.1 CDS fabZ NC_010610.1 384421 384855 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 384421..384855 Lactobacillus fermentum IFO 3956 6233066 YP_001843133.1 CDS LAF_0317 NC_010610.1 384876 386273 D acetyl-CoA carboxylase biotin carboxylase subunit 384876..386273 Lactobacillus fermentum IFO 3956 6233067 YP_001843134.1 CDS LAF_0318 NC_010610.1 386242 387090 D acetyl-CoA carboxylase carboxyl transferase subunit beta 386242..387090 Lactobacillus fermentum IFO 3956 6233068 YP_001843135.1 CDS LAF_0319 NC_010610.1 387083 387856 D acetyl-CoA carboxylase carboxyl transferase subunit alpha 387083..387856 Lactobacillus fermentum IFO 3956 6233069 YP_001843136.1 CDS LAF_0320 NC_010610.1 387874 388638 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 387874..388638 Lactobacillus fermentum IFO 3956 6233070 YP_001843137.1 CDS LAF_0321 NC_010610.1 388747 389292 D hypothetical protein 388747..389292 Lactobacillus fermentum IFO 3956 6233071 YP_001843138.1 CDS LAF_0322 NC_010610.1 389283 390254 D biotin-[acetyl-CoA-carboxylase] ligase and biotin operon repressor 389283..390254 Lactobacillus fermentum IFO 3956 6233072 YP_001843139.1 CDS LAF_0323 NC_010610.1 390368 392311 R ABC transporter ATP-binding protein complement(390368..392311) Lactobacillus fermentum IFO 3956 6233073 YP_001843140.1 CDS LAF_0324 NC_010610.1 392478 393128 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 392478..393128 Lactobacillus fermentum IFO 3956 6233074 YP_001843141.1 CDS groES NC_010610.1 393441 393722 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 393441..393722 Lactobacillus fermentum IFO 3956 6233075 YP_001843142.1 CDS groEL NC_010610.1 393747 395378 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 393747..395378 Lactobacillus fermentum IFO 3956 6233076 YP_001843143.1 CDS LAF_0327 NC_010610.1 395519 397357 D transport protein 395519..397357 Lactobacillus fermentum IFO 3956 6233077 YP_001843144.1 CDS LAF_0328 NC_010610.1 397564 397830 D hypothetical protein 397564..397830 Lactobacillus fermentum IFO 3956 6233078 YP_001843145.1 CDS LAF_0329 NC_010610.1 398029 398667 R hypothetical protein complement(398029..398667) Lactobacillus fermentum IFO 3956 6233079 YP_001843146.1 CDS LAF_0330 NC_010610.1 398731 400047 D DNA helicase 398731..400047 Lactobacillus fermentum IFO 3956 6233080 YP_001843147.1 CDS LAF_0331 NC_010610.1 400044 400718 D hypothetical protein 400044..400718 Lactobacillus fermentum IFO 3956 6233081 YP_001843148.1 CDS LAF_0332 NC_010610.1 400854 401399 D ribosomal subunit interface protein 400854..401399 Lactobacillus fermentum IFO 3956 6233082 YP_001843149.1 CDS LAF_0333 NC_010610.1 401570 403939 D preprotein translocase SecA subunit 401570..403939 Lactobacillus fermentum IFO 3956 6233083 YP_001843150.1 CDS LAF_0334 NC_010610.1 404048 405115 D peptide chain release factor 2 404048..405115 Lactobacillus fermentum IFO 3956 6233084 YP_001843151.1 CDS LAF_0335 NC_010610.1 405171 405500 D transcriptional regulator 405171..405500 Lactobacillus fermentum IFO 3956 6233085 YP_001843152.1 CDS LAF_0336 NC_010610.1 405500 405853 D hypothetical protein 405500..405853 Lactobacillus fermentum IFO 3956 6233086 YP_001843153.1 CDS LAF_0337 NC_010610.1 405868 406830 D HPr-P(Ser) kinase/phosphatase 405868..406830 Lactobacillus fermentum IFO 3956 6233087 YP_001843154.1 CDS LAF_0338 NC_010610.1 406823 407668 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 406823..407668 Lactobacillus fermentum IFO 3956 6233088 YP_001843155.1 CDS gpsA NC_010610.1 407665 408678 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 407665..408678 Lactobacillus fermentum IFO 3956 6233089 YP_001843156.1 CDS LAF_0340 NC_010610.1 408741 409652 D UTP-glucose-1-phosphate uridylyltransferase 408741..409652 Lactobacillus fermentum IFO 3956 6233090 YP_001843157.1 CDS LAF_0341 NC_010610.1 410176 410955 D hypothetical protein 410176..410955 Lactobacillus fermentum IFO 3956 6233091 YP_001843158.1 CDS LAF_0342 NC_010610.1 410971 412149 D produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 410971..412149 Lactobacillus fermentum IFO 3956 6233092 YP_001843159.1 CDS LAF_0343 NC_010610.1 412192 413166 D 2-dehydropantoate 2-reductase 412192..413166 Lactobacillus fermentum IFO 3956 6233093 YP_001843160.1 CDS LAF_0344 NC_010610.1 413268 413684 D hypothetical protein 413268..413684 Lactobacillus fermentum IFO 3956 6233094 YP_001843161.1 CDS LAF_0345 NC_010610.1 414789 415607 D homoserine O-succinyltransferase 414789..415607 Lactobacillus fermentum IFO 3956 6233095 YP_001843162.1 CDS LAF_0346 NC_010610.1 415628 416554 D cysteine synthase 415628..416554 Lactobacillus fermentum IFO 3956 6233096 YP_001843163.1 CDS LAF_0347 NC_010610.1 416745 417773 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(416745..417773) Lactobacillus fermentum IFO 3956 6233097 YP_001843164.1 CDS LAF_0348 NC_010610.1 417799 418740 R L-2-hydroxyisocaproate dehydrogenase complement(417799..418740) Lactobacillus fermentum IFO 3956 6233098 YP_001843165.1 CDS LAF_0349 NC_010610.1 418843 419643 D hypothetical protein 418843..419643 Lactobacillus fermentum IFO 3956 6233099 YP_001843166.1 CDS LAF_0350 NC_010610.1 419706 421430 D phosphoglucomutase 419706..421430 Lactobacillus fermentum IFO 3956 6233100 YP_001843167.1 CDS LAF_0351 NC_010610.1 421645 422280 D hypothetical protein 421645..422280 Lactobacillus fermentum IFO 3956 6233101 YP_001843168.1 CDS LAF_0352 NC_010610.1 422286 422516 D hypothetical protein 422286..422516 Lactobacillus fermentum IFO 3956 6233102 YP_001843169.1 CDS LAF_0353 NC_010610.1 422616 424631 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 422616..424631 Lactobacillus fermentum IFO 3956 6233103 YP_001843170.1 CDS LAF_0354 NC_010610.1 424641 427502 D excinuclease ABC subunit A 424641..427502 Lactobacillus fermentum IFO 3956 6233104 YP_001843171.1 CDS LAF_0355 NC_010610.1 427592 428677 D hypothetical protein 427592..428677 Lactobacillus fermentum IFO 3956 6233105 YP_001843172.1 CDS LAF_0356 NC_010610.1 428896 429765 D hypothetical protein 428896..429765 Lactobacillus fermentum IFO 3956 6233106 YP_001843173.1 CDS LAF_0357 NC_010610.1 429784 430764 D hypothetical protein 429784..430764 Lactobacillus fermentum IFO 3956 6233107 YP_001843174.1 CDS LAF_0358 NC_010610.1 430782 431720 D hypothetical protein 430782..431720 Lactobacillus fermentum IFO 3956 6233108 YP_001843175.1 CDS LAF_0359 NC_010610.1 431841 432488 R transcriptional regulator complement(431841..432488) Lactobacillus fermentum IFO 3956 6233109 YP_001843176.1 CDS clpP NC_010610.1 432602 433192 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(432602..433192) Lactobacillus fermentum IFO 3956 6233110 YP_001843177.1 CDS LAF_0361 NC_010610.1 433609 433743 R hypothetical protein complement(433609..433743) Lactobacillus fermentum IFO 3956 6231781 YP_001843178.1 CDS LAF_0362 NC_010610.1 434496 434627 R hypothetical protein complement(434496..434627) Lactobacillus fermentum IFO 3956 6232394 YP_001843179.1 CDS LAF_0363 NC_010610.1 434899 435912 D glyceraldehyde 3-phosphate dehydrogenase 434899..435912 Lactobacillus fermentum IFO 3956 6232414 YP_001843180.1 CDS LAF_0364 NC_010610.1 435994 437199 D phosphoglycerate kinase 435994..437199 Lactobacillus fermentum IFO 3956 6232415 YP_001843181.1 CDS LAF_0365 NC_010610.1 437305 438072 D triosephosphate isomerase 437305..438072 Lactobacillus fermentum IFO 3956 6232416 YP_001843182.1 CDS eno NC_010610.1 438189 439511 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 438189..439511 Lactobacillus fermentum IFO 3956 6232417 YP_001843183.1 CDS LAF_0367 NC_010610.1 439696 441099 D hypothetical protein 439696..441099 Lactobacillus fermentum IFO 3956 6232418 YP_001843184.1 CDS LAF_0368 NC_010610.1 441188 442738 D chloride channel protein 441188..442738 Lactobacillus fermentum IFO 3956 6232419 YP_001843185.1 CDS LAF_0369 NC_010610.1 442801 443040 D preprotein translocase SecG subunit 442801..443040 Lactobacillus fermentum IFO 3956 6232420 YP_001843186.1 CDS LAF_0370 NC_010610.1 443093 445486 D ribonuclease R 443093..445486 Lactobacillus fermentum IFO 3956 6232421 YP_001843187.1 CDS smpB NC_010610.1 445507 445980 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 445507..445980 Lactobacillus fermentum IFO 3956 6232422 YP_001843188.1 CDS LAF_0372 NC_010610.1 446008 446592 R hypothetical protein complement(446008..446592) Lactobacillus fermentum IFO 3956 6232423 YP_001843189.1 CDS LAF_0373 NC_010610.1 446730 447419 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 446730..447419 Lactobacillus fermentum IFO 3956 6232424 YP_001843190.1 CDS eutD NC_010610.1 447452 448426 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 447452..448426 Lactobacillus fermentum IFO 3956 6232425 YP_001843191.1 CDS LAF_0375 NC_010610.1 448435 448887 D hypothetical protein 448435..448887 Lactobacillus fermentum IFO 3956 6232426 YP_001843192.1 CDS LAF_0376 NC_010610.1 448887 449402 D acetyltransferase 448887..449402 Lactobacillus fermentum IFO 3956 6232427 YP_001843193.1 CDS LAF_0377 NC_010610.1 449532 450071 R DNA-directed DNA polymerase III subunit epsilon complement(449532..450071) Lactobacillus fermentum IFO 3956 6232428 YP_001843194.1 CDS murB NC_010610.1 450193 451095 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 450193..451095 Lactobacillus fermentum IFO 3956 6232429 YP_001843195.1 CDS LAF_0379 NC_010610.1 451101 451952 D hypothetical protein 451101..451952 Lactobacillus fermentum IFO 3956 6232430 YP_001843196.1 CDS LAF_0380 NC_010610.1 451942 452820 D hypothetical protein 451942..452820 Lactobacillus fermentum IFO 3956 6232431 YP_001843197.1 CDS glmM NC_010610.1 452860 454218 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 452860..454218 Lactobacillus fermentum IFO 3956 6232432 YP_001843198.1 CDS LAF_0382 NC_010610.1 454432 456252 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 454432..456252 Lactobacillus fermentum IFO 3956 6232433 YP_001843199.1 CDS LAF_0383 NC_010610.1 456530 456844 D hypothetical protein 456530..456844 Lactobacillus fermentum IFO 3956 6232434 YP_001843200.1 CDS LAF_0384 NC_010610.1 458727 459554 D hypothetical protein 458727..459554 Lactobacillus fermentum IFO 3956 6232435 YP_001843201.1 CDS LAF_0385 NC_010610.1 459875 460465 D extracellular surface protein 459875..460465 Lactobacillus fermentum IFO 3956 6232436 YP_001843202.1 CDS LAF_0386 NC_010610.1 460862 461890 R hypothetical protein complement(460862..461890) Lactobacillus fermentum IFO 3956 6232437 YP_001843203.1 CDS LAF_0387 NC_010610.1 462011 462916 D transcriptional regulator 462011..462916 Lactobacillus fermentum IFO 3956 6232438 YP_001843204.1 CDS LAF_0388 NC_010610.1 464062 464901 R hypothetical protein complement(464062..464901) Lactobacillus fermentum IFO 3956 6232439 YP_001843205.1 CDS LAF_0389 NC_010610.1 465064 465579 D hypothetical protein 465064..465579 Lactobacillus fermentum IFO 3956 6232440 YP_001843206.1 CDS LAF_0390 NC_010610.1 465814 466755 R hypothetical protein complement(465814..466755) Lactobacillus fermentum IFO 3956 6232441 YP_001843207.1 CDS LAF_0391 NC_010610.1 467232 468215 D PTS system mannose-specific IIAB component 467232..468215 Lactobacillus fermentum IFO 3956 6232442 YP_001843208.1 CDS LAF_0392 NC_010610.1 468235 469038 D PTS system mannose-specific IIC component 468235..469038 Lactobacillus fermentum IFO 3956 6232443 YP_001843209.1 CDS LAF_0393 NC_010610.1 469067 469987 D PTS system mannose-specific IID component 469067..469987 Lactobacillus fermentum IFO 3956 6232444 YP_001843210.1 CDS LAF_0394 NC_010610.1 469988 470338 D hypothetical protein 469988..470338 Lactobacillus fermentum IFO 3956 6232445 YP_001843211.1 CDS LAF_0395 NC_010610.1 470644 471864 R transposase complement(470644..471864) Lactobacillus fermentum IFO 3956 6232446 YP_001843212.1 CDS LAF_0396 NC_010610.1 472277 473164 D transposase 472277..473164 Lactobacillus fermentum IFO 3956 6232447 YP_001843213.1 CDS LAF_0397 NC_010610.1 473796 474518 D two-component response regulator 473796..474518 Lactobacillus fermentum IFO 3956 6232448 YP_001843214.1 CDS LAF_0398 NC_010610.1 474518 476020 D two-component histidine kinase 474518..476020 Lactobacillus fermentum IFO 3956 6232449 YP_001843215.1 CDS LAF_0399 NC_010610.1 476223 477083 D sugar transport protein 476223..477083 Lactobacillus fermentum IFO 3956 6232450 YP_001843216.1 CDS LAF_0400 NC_010610.1 477184 478353 D xylose repressor 477184..478353 Lactobacillus fermentum IFO 3956 6232451 YP_001843217.1 CDS LAF_0401 NC_010610.1 478437 479816 R D-xylose transport protein complement(478437..479816) Lactobacillus fermentum IFO 3956 6232452 YP_001843218.1 CDS LAF_0402 NC_010610.1 480153 481502 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 480153..481502 Lactobacillus fermentum IFO 3956 6232453 YP_001843219.1 CDS LAF_0403 NC_010610.1 481589 483094 D xylose kinase 481589..483094 Lactobacillus fermentum IFO 3956 6232454 YP_001843220.1 CDS LAF_0404 NC_010610.1 483680 484057 R hypothetical protein complement(483680..484057) Lactobacillus fermentum IFO 3956 6232455 YP_001843221.1 CDS LAF_0405 NC_010610.1 484221 485876 D xylosidase 484221..485876 Lactobacillus fermentum IFO 3956 6232456 YP_001843222.1 CDS LAF_0406 NC_010610.1 485895 487133 D hypothetical protein 485895..487133 Lactobacillus fermentum IFO 3956 6232457 YP_001843223.1 CDS LAF_0407 NC_010610.1 487215 488102 R transposase complement(487215..488102) Lactobacillus fermentum IFO 3956 6232458 YP_001843224.1 CDS LAF_0408 NC_010610.1 488099 488635 R transposase complement(488099..488635) Lactobacillus fermentum IFO 3956 6232459 YP_001843225.1 CDS LAF_0409 NC_010610.1 489059 489622 D alkyl hydroperoxide reductase 489059..489622 Lactobacillus fermentum IFO 3956 6232460 YP_001843226.1 CDS LAF_0410 NC_010610.1 489638 491302 D thioredoxin reductase 489638..491302 Lactobacillus fermentum IFO 3956 6232461 YP_001843227.1 CDS LAF_0411 NC_010610.1 491506 492792 D glucose-6-phosphate isomerase 491506..492792 Lactobacillus fermentum IFO 3956 6232462 YP_001843228.1 CDS LAF_0412 NC_010610.1 493157 493639 R hypothetical protein complement(493157..493639) Lactobacillus fermentum IFO 3956 6232463 YP_001843229.1 CDS LAF_0413 NC_010610.1 493657 494358 R hypothetical protein complement(493657..494358) Lactobacillus fermentum IFO 3956 6232464 YP_001843230.1 CDS LAF_0414 NC_010610.1 494391 495239 R aldo/keto reductase complement(494391..495239) Lactobacillus fermentum IFO 3956 6232465 YP_001843231.1 CDS LAF_0415 NC_010610.1 495379 496155 D triosephosphate isomerase 495379..496155 Lactobacillus fermentum IFO 3956 6232466 YP_001843232.1 CDS LAF_0416 NC_010610.1 496263 496970 R alpha-acetolactate decarboxylase complement(496263..496970) Lactobacillus fermentum IFO 3956 6232467 YP_001843233.1 CDS LAF_0417 NC_010610.1 497222 497554 R hypothetical protein complement(497222..497554) Lactobacillus fermentum IFO 3956 6232395 YP_001843234.1 CDS LAF_0418 NC_010610.1 498740 499201 D hypothetical protein 498740..499201 Lactobacillus fermentum IFO 3956 6232396 YP_001843235.1 CDS LAF_0419 NC_010610.1 499194 500945 D multidrug ABC transporter ATP-binding and permease components 499194..500945 Lactobacillus fermentum IFO 3956 6232470 YP_001843236.1 CDS LAF_0420 NC_010610.1 500920 502761 D multidrug ABC transporter ATP-binding and permease components 500920..502761 Lactobacillus fermentum IFO 3956 6232471 YP_001843237.1 CDS LAF_0421 NC_010610.1 502856 503875 D hypothetical protein 502856..503875 Lactobacillus fermentum IFO 3956 6232472 YP_001843238.1 CDS LAF_0422 NC_010610.1 503875 505362 D cardiolipin synthase 503875..505362 Lactobacillus fermentum IFO 3956 6232473 YP_001843239.1 CDS LAF_0423 NC_010610.1 505669 505974 R hypothetical protein complement(505669..505974) Lactobacillus fermentum IFO 3956 6232474 YP_001843240.1 CDS LAF_0424 NC_010610.1 505986 506717 R cobyric acid synthase complement(505986..506717) Lactobacillus fermentum IFO 3956 6232475 YP_001843241.1 CDS LAF_0425 NC_010610.1 506717 508054 R UDP-N-acetylmuramyl tripeptide synthase complement(506717..508054) Lactobacillus fermentum IFO 3956 6232476 YP_001843242.1 CDS LAF_0426 NC_010610.1 508333 508923 D thymidine kinase 508333..508923 Lactobacillus fermentum IFO 3956 6232477 YP_001843243.1 CDS prfA NC_010610.1 508929 510011 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 508929..510011 Lactobacillus fermentum IFO 3956 6232478 YP_001843244.1 CDS LAF_0428 NC_010610.1 510004 510855 D protoporphyrinogen oxidase 510004..510855 Lactobacillus fermentum IFO 3956 6232479 YP_001843245.1 CDS LAF_0429 NC_010610.1 510874 511905 D hypothetical protein 510874..511905 Lactobacillus fermentum IFO 3956 6232480 YP_001843246.1 CDS glyA NC_010610.1 512029 513264 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 512029..513264 Lactobacillus fermentum IFO 3956 6232481 YP_001843247.1 CDS upp NC_010610.1 513404 514039 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 513404..514039 Lactobacillus fermentum IFO 3956 6232482 YP_001843248.1 CDS LAF_0432 NC_010610.1 514207 515352 D hypothetical protein 514207..515352 Lactobacillus fermentum IFO 3956 6232483 YP_001843249.1 CDS LAF_0433 NC_010610.1 515349 516122 D hypothetical protein 515349..516122 Lactobacillus fermentum IFO 3956 6232484 YP_001843250.1 CDS LAF_0434 NC_010610.1 516256 517524 D uracil transport protein 516256..517524 Lactobacillus fermentum IFO 3956 6232485 YP_001843251.1 CDS LAF_0435 NC_010610.1 517851 518561 D F1F0-ATPase subunit A 517851..518561 Lactobacillus fermentum IFO 3956 6232486 YP_001843252.1 CDS LAF_0436 NC_010610.1 518590 518802 D F1F0-ATPase subunit C 518590..518802 Lactobacillus fermentum IFO 3956 6232487 YP_001843253.1 CDS LAF_0437 NC_010610.1 518848 519354 D F1F0-ATPase subunit B 518848..519354 Lactobacillus fermentum IFO 3956 6232488 YP_001843254.1 CDS LAF_0438 NC_010610.1 519347 519892 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the subunit delta is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 519347..519892 Lactobacillus fermentum IFO 3956 6232489 YP_001843255.1 CDS LAF_0439 NC_010610.1 519920 521458 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 519920..521458 Lactobacillus fermentum IFO 3956 6232490 YP_001843256.1 CDS LAF_0440 NC_010610.1 521490 522425 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 521490..522425 Lactobacillus fermentum IFO 3956 6232491 YP_001843257.1 CDS LAF_0441 NC_010610.1 522448 523869 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 522448..523869 Lactobacillus fermentum IFO 3956 6232492 YP_001843258.1 CDS atpC NC_010610.1 523881 524303 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 523881..524303 Lactobacillus fermentum IFO 3956 6232493 YP_001843259.1 CDS LAF_0443 NC_010610.1 524539 524760 D hypothetical protein 524539..524760 Lactobacillus fermentum IFO 3956 6232615 YP_001843260.1 CDS LAF_0444 NC_010610.1 524767 525993 D UDP-N-acetylglucosamine 1-carboxyvinyltransferase 524767..525993 Lactobacillus fermentum IFO 3956 6232744 YP_001843261.1 CDS LAF_0445 NC_010610.1 526068 527084 D rod shape-determining protein MreB 526068..527084 Lactobacillus fermentum IFO 3956 6232745 YP_001843262.1 CDS LAF_0446 NC_010610.1 527085 527327 D hypothetical protein 527085..527327 Lactobacillus fermentum IFO 3956 6232746 YP_001843263.1 CDS LAF_0447 NC_010610.1 527337 527561 D hypothetical protein 527337..527561 Lactobacillus fermentum IFO 3956 6232747 YP_001843264.1 CDS LAF_0448 NC_010610.1 527616 528818 D rod-shape determining protein 527616..528818 Lactobacillus fermentum IFO 3956 6232748 YP_001843265.1 CDS LAF_0449 NC_010610.1 528830 529117 D glycine cleavage system H protein 528830..529117 Lactobacillus fermentum IFO 3956 6232749 YP_001843266.1 CDS LAF_0450 NC_010610.1 529314 530291 D hypothetical protein 529314..530291 Lactobacillus fermentum IFO 3956 6232750 YP_001843267.1 CDS ddl NC_010610.1 530361 531494 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 530361..531494 Lactobacillus fermentum IFO 3956 6232751 YP_001843268.1 CDS LAF_0452 NC_010610.1 531868 532758 D hypothetical protein 531868..532758 Lactobacillus fermentum IFO 3956 6232752 YP_001843269.1 CDS LAF_0453 NC_010610.1 532814 533293 R hypothetical protein complement(532814..533293) Lactobacillus fermentum IFO 3956 6232753 YP_001843270.1 CDS LAF_0454 NC_010610.1 533372 533776 R hypothetical protein complement(533372..533776) Lactobacillus fermentum IFO 3956 6232754 YP_001843271.1 CDS LAF_0455 NC_010610.1 533938 535230 R recombination factor protein RarA complement(533938..535230) Lactobacillus fermentum IFO 3956 6232755 YP_001843272.1 CDS LAF_0456 NC_010610.1 535227 535700 R hypothetical protein complement(535227..535700) Lactobacillus fermentum IFO 3956 6232756 YP_001843273.1 CDS LAF_0457 NC_010610.1 535790 536200 R hypothetical protein complement(535790..536200) Lactobacillus fermentum IFO 3956 6232757 YP_001843274.1 CDS LAF_0458 NC_010610.1 536237 536983 R hypothetical protein complement(536237..536983) Lactobacillus fermentum IFO 3956 6232758 YP_001843275.1 CDS LAF_0459 NC_010610.1 537219 538064 R hypothetical protein complement(537219..538064) Lactobacillus fermentum IFO 3956 6232759 YP_001843276.1 CDS LAF_0460 NC_010610.1 539413 540534 R integrase complement(539413..540534) Lactobacillus fermentum IFO 3956 6232760 YP_001843277.1 CDS LAF_0461 NC_010610.1 542998 543198 D hypothetical protein 542998..543198 Lactobacillus fermentum IFO 3956 6232761 YP_001843278.1 CDS LAF_0462 NC_010610.1 543201 543686 D hypothetical protein 543201..543686 Lactobacillus fermentum IFO 3956 6232762 YP_001843279.1 CDS LAF_0463 NC_010610.1 543711 544391 D hypothetical protein 543711..544391 Lactobacillus fermentum IFO 3956 6232763 YP_001843280.1 CDS LAF_0464 NC_010610.1 544384 545730 D phage helicase 544384..545730 Lactobacillus fermentum IFO 3956 6232764 YP_001843281.1 CDS LAF_0465 NC_010610.1 545750 546310 D hypothetical protein 545750..546310 Lactobacillus fermentum IFO 3956 6232765 YP_001843282.1 CDS LAF_0466 NC_010610.1 546376 548685 D phage primase 546376..548685 Lactobacillus fermentum IFO 3956 6232766 YP_001843283.1 CDS LAF_0467 NC_010610.1 548986 549330 D hypothetical protein 548986..549330 Lactobacillus fermentum IFO 3956 6232767 YP_001843284.1 CDS LAF_0468 NC_010610.1 550838 551746 D hypothetical protein 550838..551746 Lactobacillus fermentum IFO 3956 6232768 YP_001843285.1 CDS LAF_0469 NC_010610.1 552537 552998 D phage terminase 552537..552998 Lactobacillus fermentum IFO 3956 6232769 YP_001843286.1 CDS LAF_0470 NC_010610.1 552995 554899 D phage terminase 552995..554899 Lactobacillus fermentum IFO 3956 6232770 YP_001843287.1 CDS LAF_0471 NC_010610.1 554914 555096 D hypothetical protein 554914..555096 Lactobacillus fermentum IFO 3956 6232771 YP_001843288.1 CDS LAF_0472 NC_010610.1 555096 556316 D phage portal protein 555096..556316 Lactobacillus fermentum IFO 3956 6232772 YP_001843289.1 CDS LAF_0473 NC_010610.1 556765 558027 D phage capsid protein 556765..558027 Lactobacillus fermentum IFO 3956 6232773 YP_001843290.1 CDS LAF_0474 NC_010610.1 558048 558350 D hypothetical protein 558048..558350 Lactobacillus fermentum IFO 3956 6232774 YP_001843291.1 CDS LAF_0475 NC_010610.1 558569 559120 D hypothetical protein 558569..559120 Lactobacillus fermentum IFO 3956 6232775 YP_001843292.1 CDS LAF_0476 NC_010610.1 559503 560126 D hypothetical protein 559503..560126 Lactobacillus fermentum IFO 3956 6232776 YP_001843293.1 CDS LAF_0477 NC_010610.1 560193 560522 D hypothetical protein 560193..560522 Lactobacillus fermentum IFO 3956 6232777 YP_001843294.1 CDS LAF_0478 NC_010610.1 560727 564926 D hypothetical protein 560727..564926 Lactobacillus fermentum IFO 3956 6232778 YP_001843295.1 CDS LAF_0479 NC_010610.1 564989 565828 D hypothetical protein 564989..565828 Lactobacillus fermentum IFO 3956 6232779 YP_001843296.1 CDS LAF_0480 NC_010610.1 565835 566875 D hypothetical protein 565835..566875 Lactobacillus fermentum IFO 3956 6232780 YP_001843297.1 CDS LAF_0481 NC_010610.1 566872 568434 D hypothetical protein 566872..568434 Lactobacillus fermentum IFO 3956 6232781 YP_001843298.1 CDS LAF_0482 NC_010610.1 568421 571915 D hypothetical protein 568421..571915 Lactobacillus fermentum IFO 3956 6232782 YP_001843299.1 CDS LAF_0483 NC_010610.1 571931 572119 D hypothetical protein 571931..572119 Lactobacillus fermentum IFO 3956 6232783 YP_001843300.1 CDS LAF_0484 NC_010610.1 572122 572379 D hypothetical protein 572122..572379 Lactobacillus fermentum IFO 3956 6232784 YP_001843301.1 CDS LAF_0485 NC_010610.1 573257 573745 D hypothetical protein 573257..573745 Lactobacillus fermentum IFO 3956 6232785 YP_001843302.1 CDS LAF_0486 NC_010610.1 574530 575693 D hypothetical protein 574530..575693 Lactobacillus fermentum IFO 3956 6232786 YP_001843303.1 CDS rpsD NC_010610.1 575895 576500 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(575895..576500) Lactobacillus fermentum IFO 3956 6232787 YP_001843304.1 CDS LAF_0488 NC_010610.1 576830 578539 D acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 576830..578539 Lactobacillus fermentum IFO 3956 6232788 YP_001843305.1 CDS LAF_0489 NC_010610.1 578720 579868 D cysteine desulfurase 578720..579868 Lactobacillus fermentum IFO 3956 6232789 YP_001843306.1 CDS LAF_0490 NC_010610.1 579881 581101 D Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 579881..581101 Lactobacillus fermentum IFO 3956 6232790 YP_001843307.1 CDS LAF_0491 NC_010610.1 581484 582785 D gluconate symporter 581484..582785 Lactobacillus fermentum IFO 3956 6232791 YP_001843308.1 CDS LAF_0492 NC_010610.1 582798 583940 D glycerate kinase 582798..583940 Lactobacillus fermentum IFO 3956 6232792 YP_001843309.1 CDS LAF_0493 NC_010610.1 584202 584894 R transposase complement(584202..584894) Lactobacillus fermentum IFO 3956 6232793 YP_001843310.1 CDS LAF_0494 NC_010610.1 586745 587149 D hypothetical protein 586745..587149 Lactobacillus fermentum IFO 3956 6232794 YP_001843311.1 CDS LAF_0495 NC_010610.1 587441 587920 D hypothetical protein 587441..587920 Lactobacillus fermentum IFO 3956 6232795 YP_001843312.1 CDS LAF_0496 NC_010610.1 588072 588566 D thiol peroxidase 588072..588566 Lactobacillus fermentum IFO 3956 6232796 YP_001843313.1 CDS valS NC_010610.1 588872 591526 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 588872..591526 Lactobacillus fermentum IFO 3956 6232797 YP_001843314.1 CDS LAF_0498 NC_010610.1 591635 592957 D folylpolyglutamate synthase 591635..592957 Lactobacillus fermentum IFO 3956 6232798 YP_001843315.1 CDS LAF_0499 NC_010610.1 593010 593636 D hypothetical protein 593010..593636 Lactobacillus fermentum IFO 3956 6232799 YP_001843316.1 CDS LAF_0500 NC_010610.1 593799 594809 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 593799..594809 Lactobacillus fermentum IFO 3956 6232800 YP_001843317.1 CDS LAF_0501 NC_010610.1 594928 595779 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 594928..595779 Lactobacillus fermentum IFO 3956 6232801 YP_001843318.1 CDS LAF_0502 NC_010610.1 595795 596328 D cell shape determining protein MreD 595795..596328 Lactobacillus fermentum IFO 3956 6232802 YP_001843319.1 CDS LAF_0503 NC_010610.1 596805 597452 D glutamine ABC transporter permease 596805..597452 Lactobacillus fermentum IFO 3956 6232803 YP_001843320.1 CDS LAF_0504 NC_010610.1 597467 598111 D glutamine ABC transporter ATP-binding protein 597467..598111 Lactobacillus fermentum IFO 3956 6232804 YP_001843321.1 CDS LAF_0505 NC_010610.1 598127 598984 D glutamine ABC transporter substrate-binding protein 598127..598984 Lactobacillus fermentum IFO 3956 6232805 YP_001843322.1 CDS LAF_0506 NC_010610.1 599240 600514 D hypothetical protein 599240..600514 Lactobacillus fermentum IFO 3956 6232806 YP_001843323.1 CDS LAF_0507 NC_010610.1 600501 601802 D zinc-dependent protease 600501..601802 Lactobacillus fermentum IFO 3956 6232807 YP_001843324.1 CDS LAF_0508 NC_010610.1 601899 602903 D hypothetical protein 601899..602903 Lactobacillus fermentum IFO 3956 6232808 YP_001843325.1 CDS LAF_0509 NC_010610.1 602919 603503 D CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase 602919..603503 Lactobacillus fermentum IFO 3956 6232809 YP_001843326.1 CDS LAF_0510 NC_010610.1 603580 604824 D competence-damage protein 603580..604824 Lactobacillus fermentum IFO 3956 6232810 YP_001843327.1 CDS recA NC_010610.1 604918 605979 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 604918..605979 Lactobacillus fermentum IFO 3956 6232811 YP_001843328.1 CDS LAF_0512 NC_010610.1 606374 607933 D hypothetical protein 606374..607933 Lactobacillus fermentum IFO 3956 6232812 YP_001843329.1 CDS LAF_0513 NC_010610.1 608027 610669 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 608027..610669 Lactobacillus fermentum IFO 3956 6232813 YP_001843330.1 CDS mutL NC_010610.1 610686 612629 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 610686..612629 Lactobacillus fermentum IFO 3956 6232814 YP_001843331.1 CDS LAF_0515 NC_010610.1 612683 613285 D holliday junction DNA helicase RuvA 612683..613285 Lactobacillus fermentum IFO 3956 6232815 YP_001843332.1 CDS ruvB NC_010610.1 613296 614315 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 613296..614315 Lactobacillus fermentum IFO 3956 6232816 YP_001843333.1 CDS LAF_0517 NC_010610.1 614296 615246 D hypothetical protein 614296..615246 Lactobacillus fermentum IFO 3956 6232817 YP_001843334.1 CDS LAF_0518 NC_010610.1 615317 615739 D hypothetical protein 615317..615739 Lactobacillus fermentum IFO 3956 6232818 YP_001843335.1 CDS LAF_0519 NC_010610.1 615965 616924 D hypothetical protein 615965..616924 Lactobacillus fermentum IFO 3956 6232819 YP_001843336.1 CDS LAF_0520 NC_010610.1 616924 618306 D ATP-dependent RNA helicase 616924..618306 Lactobacillus fermentum IFO 3956 6232820 YP_001843337.1 CDS LAF_0521 NC_010610.1 618559 621207 D alanyl-tRNA synthase 618559..621207 Lactobacillus fermentum IFO 3956 6232821 YP_001843338.1 CDS LAF_0522 NC_010610.1 621417 621680 D hypothetical protein 621417..621680 Lactobacillus fermentum IFO 3956 6232822 YP_001843339.1 CDS LAF_0523 NC_010610.1 621680 622117 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 621680..622117 Lactobacillus fermentum IFO 3956 6232823 YP_001843340.1 CDS LAF_0524 NC_010610.1 622129 622434 D hypothetical protein 622129..622434 Lactobacillus fermentum IFO 3956 6232824 YP_001843341.1 CDS LAF_0525 NC_010610.1 622557 623462 R ribonuclease HIII complement(622557..623462) Lactobacillus fermentum IFO 3956 6231863 YP_001843342.1 CDS LAF_0526 NC_010610.1 623550 624077 D hypothetical protein 623550..624077 Lactobacillus fermentum IFO 3956 6233632 YP_001843343.1 CDS LAF_0527 NC_010610.1 624095 626470 D DNA mismatch repair protein MutS2 624095..626470 Lactobacillus fermentum IFO 3956 6233633 YP_001843344.1 CDS LAF_0528 NC_010610.1 626543 626857 D thioredoxin 626543..626857 Lactobacillus fermentum IFO 3956 6233634 YP_001843345.1 CDS LAF_0529 NC_010610.1 627003 628265 D chloride channel protein 627003..628265 Lactobacillus fermentum IFO 3956 6233635 YP_001843346.1 CDS LAF_0530 NC_010610.1 628367 628909 R hypothetical protein complement(628367..628909) Lactobacillus fermentum IFO 3956 6233636 YP_001843347.1 CDS LAF_0531 NC_010610.1 629069 629875 D glutamate racemase 629069..629875 Lactobacillus fermentum IFO 3956 6233637 YP_001843348.1 CDS LAF_0532 NC_010610.1 629877 630470 D xanthosine triphosphate pyrophosphatase 629877..630470 Lactobacillus fermentum IFO 3956 6233638 YP_001843349.1 CDS LAF_0533 NC_010610.1 630470 630982 D hypothetical protein 630470..630982 Lactobacillus fermentum IFO 3956 6233639 YP_001843350.1 CDS LAF_0534 NC_010610.1 631221 632063 R hypothetical protein complement(631221..632063) Lactobacillus fermentum IFO 3956 6233640 YP_001843351.1 CDS LAF_0535 NC_010610.1 632053 632931 R hypothetical protein complement(632053..632931) Lactobacillus fermentum IFO 3956 6233641 YP_001843352.1 CDS LAF_0536 NC_010610.1 633061 633474 D hypothetical protein 633061..633474 Lactobacillus fermentum IFO 3956 6233642 YP_001843353.1 CDS LAF_0537 NC_010610.1 633486 633917 D hypothetical protein 633486..633917 Lactobacillus fermentum IFO 3956 6233643 YP_001843354.1 CDS LAF_0538 NC_010610.1 633999 635105 R Xaa-Pro dipeptidase complement(633999..635105) Lactobacillus fermentum IFO 3956 6233644 YP_001843355.1 CDS LAF_0539 NC_010610.1 635263 636285 D catabolite control protein 635263..636285 Lactobacillus fermentum IFO 3956 6233645 YP_001843356.1 CDS LAF_0540 NC_010610.1 636303 637160 D hypothetical protein 636303..637160 Lactobacillus fermentum IFO 3956 6233646 YP_001843357.1 CDS LAF_0541 NC_010610.1 637227 637970 D hypothetical protein 637227..637970 Lactobacillus fermentum IFO 3956 6233647 YP_001843358.1 CDS LAF_0542 NC_010610.1 638221 639261 D hypothetical protein 638221..639261 Lactobacillus fermentum IFO 3956 6233648 YP_001843359.1 CDS LAF_0543 NC_010610.1 639392 641374 D hypothetical protein 639392..641374 Lactobacillus fermentum IFO 3956 6233649 YP_001843360.1 CDS LAF_0544 NC_010610.1 641566 642525 D competence protein 641566..642525 Lactobacillus fermentum IFO 3956 6233650 YP_001843361.1 CDS LAF_0545 NC_010610.1 642563 643510 D competence protein 642563..643510 Lactobacillus fermentum IFO 3956 6233651 YP_001843362.1 CDS LAF_0546 NC_010610.1 643510 643827 D competence protein 643510..643827 Lactobacillus fermentum IFO 3956 6233652 YP_001843363.1 CDS LAF_0547 NC_010610.1 643805 644290 D hypothetical protein 643805..644290 Lactobacillus fermentum IFO 3956 6233653 YP_001843364.1 CDS LAF_0548 NC_010610.1 644298 644546 D hypothetical protein 644298..644546 Lactobacillus fermentum IFO 3956 6233654 YP_001843365.1 CDS LAF_0549 NC_010610.1 645413 646282 D hypothetical protein 645413..646282 Lactobacillus fermentum IFO 3956 6233655 YP_001843366.1 CDS LAF_0550 NC_010610.1 646296 647492 D acetate kinase 646296..647492 Lactobacillus fermentum IFO 3956 6233656 YP_001843367.1 CDS LAF_0551 NC_010610.1 647549 648172 D phosphoesterase 647549..648172 Lactobacillus fermentum IFO 3956 6233657 YP_001843368.1 CDS LAF_0552 NC_010610.1 648199 648735 D hypothetical protein 648199..648735 Lactobacillus fermentum IFO 3956 6233658 YP_001843369.1 CDS LAF_0553 NC_010610.1 648735 649517 D sugar phosphatase 648735..649517 Lactobacillus fermentum IFO 3956 6233659 YP_001843370.1 CDS LAF_0554 NC_010610.1 650119 650769 R hypothetical protein complement(650119..650769) Lactobacillus fermentum IFO 3956 6233660 YP_001843371.1 CDS LAF_0555 NC_010610.1 658077 658571 R hypothetical protein complement(658077..658571) Lactobacillus fermentum IFO 3956 6233551 YP_001843372.1 CDS LAF_0556 NC_010610.1 658898 659302 D hypothetical protein 658898..659302 Lactobacillus fermentum IFO 3956 6233662 YP_001843373.1 CDS LAF_0557 NC_010610.1 659439 660152 D competence negative regulator 659439..660152 Lactobacillus fermentum IFO 3956 6233663 YP_001843374.1 CDS LAF_0558 NC_010610.1 660205 661227 D competence protein 660205..661227 Lactobacillus fermentum IFO 3956 6233664 YP_001843375.1 CDS LAF_0559 NC_010610.1 661558 662184 R hypothetical protein complement(661558..662184) Lactobacillus fermentum IFO 3956 6233665 YP_001843376.1 CDS LAF_0560 NC_010610.1 662347 663027 D GTP pyrophosphokinase 662347..663027 Lactobacillus fermentum IFO 3956 6233666 YP_001843377.1 CDS ppnK NC_010610.1 663042 663851 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 663042..663851 Lactobacillus fermentum IFO 3956 6233667 YP_001843378.1 CDS LAF_0562 NC_010610.1 663851 664741 D pseudouridine synthase 663851..664741 Lactobacillus fermentum IFO 3956 6233668 YP_001843379.1 CDS LAF_0563 NC_010610.1 664798 665826 R hypothetical protein complement(664798..665826) Lactobacillus fermentum IFO 3956 6233669 YP_001843380.1 CDS LAF_0564 NC_010610.1 665938 666792 D rRNA methyltransferase 665938..666792 Lactobacillus fermentum IFO 3956 6233670 YP_001843381.1 CDS LAF_0565 NC_010610.1 666964 667470 D rRNA methyltransferase 666964..667470 Lactobacillus fermentum IFO 3956 6233671 YP_001843382.1 CDS LAF_0566 NC_010610.1 667480 669789 D cell division protein 667480..669789 Lactobacillus fermentum IFO 3956 6233672 YP_001843383.1 CDS LAF_0567 NC_010610.1 670117 670503 D hypothetical protein 670117..670503 Lactobacillus fermentum IFO 3956 6233673 YP_001843384.1 CDS LAF_0568 NC_010610.1 670645 671076 D hypothetical protein 670645..671076 Lactobacillus fermentum IFO 3956 6233674 YP_001843385.1 CDS mraW NC_010610.1 671091 672035 D S-adenosyl-methyltransferase MraW 671091..672035 Lactobacillus fermentum IFO 3956 6233675 YP_001843386.1 CDS LAF_0570 NC_010610.1 672045 672422 D cell division protein 672045..672422 Lactobacillus fermentum IFO 3956 6233676 YP_001843387.1 CDS LAF_0571 NC_010610.1 672422 674578 D penicillin binding protein 2B 672422..674578 Lactobacillus fermentum IFO 3956 6233677 YP_001843388.1 CDS mraY NC_010610.1 674615 675574 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 674615..675574 Lactobacillus fermentum IFO 3956 6233678 YP_001843389.1 CDS murD NC_010610.1 675602 676978 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 675602..676978 Lactobacillus fermentum IFO 3956 6233679 YP_001843390.1 CDS murG NC_010610.1 676978 678084 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 676978..678084 Lactobacillus fermentum IFO 3956 6233680 YP_001843391.1 CDS LAF_0575 NC_010610.1 678101 678946 D cell division initiation protein FtsQ 678101..678946 Lactobacillus fermentum IFO 3956 6233681 YP_001843392.1 CDS LAF_0576 NC_010610.1 679090 680472 D cell division protein FtsA 679090..680472 Lactobacillus fermentum IFO 3956 6233682 YP_001843393.1 CDS LAF_0577 NC_010610.1 680499 681788 D cell division protein FtsZ 680499..681788 Lactobacillus fermentum IFO 3956 6233683 YP_001843394.1 CDS LAF_0578 NC_010610.1 681827 682297 D hypothetical protein 681827..682297 Lactobacillus fermentum IFO 3956 6233684 YP_001843395.1 CDS LAF_0579 NC_010610.1 682294 682572 D hypothetical protein 682294..682572 Lactobacillus fermentum IFO 3956 6233685 YP_001843396.1 CDS LAF_0580 NC_010610.1 682580 683368 D hypothetical protein 682580..683368 Lactobacillus fermentum IFO 3956 6233686 YP_001843397.1 CDS LAF_0581 NC_010610.1 683393 684079 D cell division initiation protein 683393..684079 Lactobacillus fermentum IFO 3956 6233687 YP_001843398.1 CDS ileS NC_010610.1 684373 687165 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 684373..687165 Lactobacillus fermentum IFO 3956 6233688 YP_001843399.1 CDS LAF_0583 NC_010610.1 687307 687519 D cold shock protein 687307..687519 Lactobacillus fermentum IFO 3956 6233689 YP_001843400.1 CDS LAF_0584 NC_010610.1 687521 688069 D ADP-ribose pyrophosphatase 687521..688069 Lactobacillus fermentum IFO 3956 6233690 YP_001843401.1 CDS LAF_0585 NC_010610.1 688070 688306 D hypothetical protein 688070..688306 Lactobacillus fermentum IFO 3956 6232616 YP_001843402.1 CDS LAF_0586 NC_010610.1 688319 689026 D 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase 688319..689026 Lactobacillus fermentum IFO 3956 6231782 YP_001843403.1 CDS LAF_0587 NC_010610.1 689026 689370 D hypothetical protein 689026..689370 Lactobacillus fermentum IFO 3956 6231783 YP_001843404.1 CDS mnmA NC_010610.1 689477 690610 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 689477..690610 Lactobacillus fermentum IFO 3956 6231784 YP_001843405.1 CDS LAF_0589 NC_010610.1 691088 692743 D hypothetical protein 691088..692743 Lactobacillus fermentum IFO 3956 6231785 YP_001843406.1 CDS LAF_0590 NC_010610.1 692851 693783 D L-2-hydroxyisocaproate dehydrogenase 692851..693783 Lactobacillus fermentum IFO 3956 6231786 YP_001843407.1 CDS LAF_0591 NC_010610.1 693992 694648 D phosphoglycerate mutase 693992..694648 Lactobacillus fermentum IFO 3956 6231787 YP_001843408.1 CDS LAF_0592 NC_010610.1 694663 695352 D hypothetical protein 694663..695352 Lactobacillus fermentum IFO 3956 6231788 YP_001843409.1 CDS LAF_0593 NC_010610.1 695353 697899 D exodeoxyribonuclease V subunit alpha 695353..697899 Lactobacillus fermentum IFO 3956 6231789 YP_001843410.1 CDS LAF_0594 NC_010610.1 697970 698956 D ribose-phosphate pyrophosphokinase 697970..698956 Lactobacillus fermentum IFO 3956 6231790 YP_001843411.1 CDS LAF_0595 NC_010610.1 698989 699417 R hypothetical protein complement(698989..699417) Lactobacillus fermentum IFO 3956 6231791 YP_001843412.1 CDS LAF_0596 NC_010610.1 699641 700615 R transcription regulator complement(699641..700615) Lactobacillus fermentum IFO 3956 6231792 YP_001843413.1 CDS LAF_0597 NC_010610.1 700875 701090 R hypothetical protein complement(700875..701090) Lactobacillus fermentum IFO 3956 6231793 YP_001843414.1 CDS LAF_0598 NC_010610.1 701205 701663 D hypothetical protein 701205..701663 Lactobacillus fermentum IFO 3956 6231794 YP_001843415.1 CDS def NC_010610.1 701774 702343 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(701774..702343) Lactobacillus fermentum IFO 3956 6231795 YP_001843416.1 CDS LAF_0600 NC_010610.1 702471 702758 D hypothetical protein 702471..702758 Lactobacillus fermentum IFO 3956 6231796 YP_001843417.1 CDS LAF_0601 NC_010610.1 702762 703526 D myo-inositol-1(or 4)-monophosphatase 702762..703526 Lactobacillus fermentum IFO 3956 6231797 YP_001843418.1 CDS LAF_0602 NC_010610.1 703604 705451 D GTP-binding protein 703604..705451 Lactobacillus fermentum IFO 3956 6231798 YP_001843419.1 CDS LAF_0603 NC_010610.1 705554 706753 D cell division protein 705554..706753 Lactobacillus fermentum IFO 3956 6231799 YP_001843420.1 CDS LAF_0604 NC_010610.1 706740 707036 D hypothetical protein 706740..707036 Lactobacillus fermentum IFO 3956 6231800 YP_001843421.1 CDS LAF_0605 NC_010610.1 707039 707599 D N6-adenine-specific methylase 707039..707599 Lactobacillus fermentum IFO 3956 6231801 YP_001843422.1 CDS coaD NC_010610.1 707604 708125 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 707604..708125 Lactobacillus fermentum IFO 3956 6231802 YP_001843423.1 CDS LAF_0607 NC_010610.1 708109 709158 D hypothetical protein 708109..709158 Lactobacillus fermentum IFO 3956 6231803 YP_001843424.1 CDS LAF_0608 NC_010610.1 709224 709898 D competence protein 709224..709898 Lactobacillus fermentum IFO 3956 6231804 YP_001843425.1 CDS LAF_0609 NC_010610.1 709953 710432 D competence protein 709953..710432 Lactobacillus fermentum IFO 3956 6231805 YP_001843426.1 CDS LAF_0610 NC_010610.1 710433 712670 D competence protein 710433..712670 Lactobacillus fermentum IFO 3956 6231806 YP_001843427.1 CDS LAF_0611 NC_010610.1 712688 713716 D DNA-directed DNA polymerase III subunit delta 712688..713716 Lactobacillus fermentum IFO 3956 6231807 YP_001843428.1 CDS LAF_0612 NC_010610.1 713905 714903 R transposase complement(713905..714903) Lactobacillus fermentum IFO 3956 6231808 YP_001843429.1 CDS rpsT NC_010610.1 715077 715331 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(715077..715331) Lactobacillus fermentum IFO 3956 6231809 YP_001843430.1 CDS rpsO NC_010610.1 715577 715846 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 715577..715846 Lactobacillus fermentum IFO 3956 6231810 YP_001843431.1 CDS LAF_0615 NC_010610.1 716003 717373 D hypothetical protein 716003..717373 Lactobacillus fermentum IFO 3956 6231811 YP_001843432.1 CDS LAF_0616 NC_010610.1 717544 719343 D metallo-beta-lactamase superfamily protein 717544..719343 Lactobacillus fermentum IFO 3956 6231812 YP_001843433.1 CDS LAF_0617 NC_010610.1 719364 720329 D hypothetical protein 719364..720329 Lactobacillus fermentum IFO 3956 6231813 YP_001843434.1 CDS LAF_0618 NC_010610.1 720510 721700 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 720510..721700 Lactobacillus fermentum IFO 3956 6231814 YP_001843435.1 CDS tig NC_010610.1 721871 723178 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 721871..723178 Lactobacillus fermentum IFO 3956 6231815 YP_001843436.1 CDS clpX NC_010610.1 723329 724579 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 723329..724579 Lactobacillus fermentum IFO 3956 6231816 YP_001843437.1 CDS engB NC_010610.1 724593 725186 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 724593..725186 Lactobacillus fermentum IFO 3956 6231817 YP_001843438.1 CDS LAF_0622 NC_010610.1 725186 725485 D hypothetical protein 725186..725485 Lactobacillus fermentum IFO 3956 6231818 YP_001843439.1 CDS LAF_0623 NC_010610.1 725752 725898 R hypothetical protein complement(725752..725898) Lactobacillus fermentum IFO 3956 6231819 YP_001843440.1 CDS LAF_0624 NC_010610.1 726086 726832 D glutamine ABC transporter ATP-binding protein 726086..726832 Lactobacillus fermentum IFO 3956 6231820 YP_001843441.1 CDS uvrC NC_010610.1 727110 728921 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 727110..728921 Lactobacillus fermentum IFO 3956 6231821 YP_001843442.1 CDS LAF_0626 NC_010610.1 728986 730293 D GTP-binding protein 728986..730293 Lactobacillus fermentum IFO 3956 6231822 YP_001843443.1 CDS LAF_0627 NC_010610.1 730320 731252 D beta-lactamase superfamily hydrolase 730320..731252 Lactobacillus fermentum IFO 3956 6231823 YP_001843444.1 CDS LAF_0628 NC_010610.1 731273 732112 D short-chain dehydrogenase/oxidoreductase 731273..732112 Lactobacillus fermentum IFO 3956 6231824 YP_001843445.1 CDS LAF_0629 NC_010610.1 732185 734482 D single-strand DNA-specific exonuclease 732185..734482 Lactobacillus fermentum IFO 3956 6231825 YP_001843446.1 CDS LAF_0630 NC_010610.1 734496 735023 D adenine phosphoribosyltransferase 734496..735023 Lactobacillus fermentum IFO 3956 6231826 YP_001843447.1 CDS LAF_0631 NC_010610.1 735355 735732 D hypothetical protein 735355..735732 Lactobacillus fermentum IFO 3956 6231827 YP_001843448.1 CDS LAF_0632 NC_010610.1 735812 736810 R D-lactate dehydrogenase complement(735812..736810) Lactobacillus fermentum IFO 3956 6231828 YP_001843449.1 CDS LAF_0633 NC_010610.1 737313 738122 D 2-oxo-hept-3-ene-1,7-dioate hydratase 737313..738122 Lactobacillus fermentum IFO 3956 6231829 YP_001843450.1 CDS LAF_0634 NC_010610.1 738555 738824 D hypothetical protein 738555..738824 Lactobacillus fermentum IFO 3956 6231830 YP_001843451.1 CDS LAF_0635 NC_010610.1 738827 739363 D NAD(P)H oxidoreductase 738827..739363 Lactobacillus fermentum IFO 3956 6231831 YP_001843452.1 CDS LAF_0636 NC_010610.1 739356 739655 D hypothetical protein 739356..739655 Lactobacillus fermentum IFO 3956 6231832 YP_001843453.1 CDS LAF_0637 NC_010610.1 739655 739984 D hypothetical protein 739655..739984 Lactobacillus fermentum IFO 3956 6231833 YP_001843454.1 CDS LAF_0638 NC_010610.1 740332 740622 R hypothetical protein complement(740332..740622) Lactobacillus fermentum IFO 3956 6231834 YP_001843455.1 CDS LAF_0639 NC_010610.1 741841 742932 R glycerol dehydrogenase complement(741841..742932) Lactobacillus fermentum IFO 3956 6231835 YP_001843456.1 CDS LAF_0640 NC_010610.1 743670 743813 D hypothetical protein 743670..743813 Lactobacillus fermentum IFO 3956 6231836 YP_001843457.1 CDS LAF_0641 NC_010610.1 743898 744599 D short-chain dehydrogenase/oxidoreductase 743898..744599 Lactobacillus fermentum IFO 3956 6231837 YP_001843458.1 CDS LAF_0642 NC_010610.1 744599 745159 D acetyltransferase 744599..745159 Lactobacillus fermentum IFO 3956 6231838 YP_001843459.1 CDS LAF_0643 NC_010610.1 745518 745883 D hypothetical protein 745518..745883 Lactobacillus fermentum IFO 3956 6231839 YP_001843460.1 CDS LAF_0644 NC_010610.1 746155 746523 D hypothetical protein 746155..746523 Lactobacillus fermentum IFO 3956 6231840 YP_001843461.1 CDS LAF_0645 NC_010610.1 746649 747758 R transport protein complement(746649..747758) Lactobacillus fermentum IFO 3956 6231841 YP_001843462.1 CDS asnB NC_010610.1 748344 749933 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(748344..749933) Lactobacillus fermentum IFO 3956 6231842 YP_001843463.1 CDS LAF_0647 NC_010610.1 750757 751212 R transposase complement(750757..751212) Lactobacillus fermentum IFO 3956 6231843 YP_001843464.1 CDS LAF_0648 NC_010610.1 751286 752536 D transposase 751286..752536 Lactobacillus fermentum IFO 3956 6231844 YP_001843465.1 CDS LAF_0649 NC_010610.1 752968 753672 D hypothetical protein 752968..753672 Lactobacillus fermentum IFO 3956 6231845 YP_001843466.1 CDS LAF_0650 NC_010610.1 753793 753957 D hypothetical protein 753793..753957 Lactobacillus fermentum IFO 3956 6231846 YP_001843467.1 CDS LAF_0651 NC_010610.1 753994 754224 D hypothetical protein 753994..754224 Lactobacillus fermentum IFO 3956 6231847 YP_001843468.1 CDS LAF_0652 NC_010610.1 755100 756485 D mucus binding protein precursor 755100..756485 Lactobacillus fermentum IFO 3956 6231848 YP_001843469.1 CDS LAF_0653 NC_010610.1 756567 757007 R hypothetical protein complement(756567..757007) Lactobacillus fermentum IFO 3956 6231849 YP_001843470.1 CDS LAF_0654 NC_010610.1 757018 758007 R repressor complement(757018..758007) Lactobacillus fermentum IFO 3956 6231850 YP_001843471.1 CDS LAF_0655 NC_010610.1 758029 758475 R hypothetical protein complement(758029..758475) Lactobacillus fermentum IFO 3956 6231851 YP_001843472.1 CDS LAF_0656 NC_010610.1 758581 759213 D hypothetical protein 758581..759213 Lactobacillus fermentum IFO 3956 6231852 YP_001843473.1 CDS LAF_0657 NC_010610.1 759458 760552 R integrase complement(759458..760552) Lactobacillus fermentum IFO 3956 6233552 YP_001843474.1 CDS LAF_0658 NC_010610.1 761340 762074 R hypothetical protein complement(761340..762074) Lactobacillus fermentum IFO 3956 6231854 YP_001843475.1 CDS LAF_0659 NC_010610.1 762662 762976 R hypothetical protein complement(762662..762976) Lactobacillus fermentum IFO 3956 6231855 YP_001843476.1 CDS LAF_0660 NC_010610.1 763466 763780 R hypothetical protein complement(763466..763780) Lactobacillus fermentum IFO 3956 6231856 YP_001843477.1 CDS LAF_0661 NC_010610.1 764188 764973 D phage antirepressor 764188..764973 Lactobacillus fermentum IFO 3956 6231857 YP_001843478.1 CDS LAF_0662 NC_010610.1 764977 765141 D hypothetical protein 764977..765141 Lactobacillus fermentum IFO 3956 6231858 YP_001843479.1 CDS LAF_0663 NC_010610.1 765522 765704 D hypothetical protein 765522..765704 Lactobacillus fermentum IFO 3956 6231859 YP_001843480.1 CDS LAF_0664 NC_010610.1 765701 765928 R hypothetical protein complement(765701..765928) Lactobacillus fermentum IFO 3956 6231860 YP_001843481.1 CDS LAF_0665 NC_010610.1 765987 766241 D hypothetical protein 765987..766241 Lactobacillus fermentum IFO 3956 6231861 YP_001843482.1 CDS LAF_0666 NC_010610.1 766581 766790 D hypothetical protein 766581..766790 Lactobacillus fermentum IFO 3956 6231862 YP_001843483.1 CDS LAF_0667 NC_010610.1 766760 767788 D hypothetical protein 766760..767788 Lactobacillus fermentum IFO 3956 6232962 YP_001843484.1 CDS LAF_0668 NC_010610.1 767781 768629 D hypothetical protein 767781..768629 Lactobacillus fermentum IFO 3956 6232963 YP_001843485.1 CDS LAF_0669 NC_010610.1 768629 769150 D single-strand binding protein 768629..769150 Lactobacillus fermentum IFO 3956 6232964 YP_001843486.1 CDS LAF_0670 NC_010610.1 771189 772376 D transposase 771189..772376 Lactobacillus fermentum IFO 3956 6232965 YP_001843487.1 CDS LAF_0671 NC_010610.1 772764 773453 D hypothetical protein 772764..773453 Lactobacillus fermentum IFO 3956 6232966 YP_001843488.1 CDS LAF_0672 NC_010610.1 776191 777462 D hypothetical protein 776191..777462 Lactobacillus fermentum IFO 3956 6232967 YP_001843489.1 CDS LAF_0673 NC_010610.1 777941 781120 D hypothetical protein 777941..781120 Lactobacillus fermentum IFO 3956 6232968 YP_001843490.1 CDS LAF_0674 NC_010610.1 783261 783845 D hypothetical protein 783261..783845 Lactobacillus fermentum IFO 3956 6232969 YP_001843491.1 CDS LAF_0675 NC_010610.1 783999 785015 R transposase complement(783999..785015) Lactobacillus fermentum IFO 3956 6232970 YP_001843492.1 CDS LAF_0676 NC_010610.1 787295 788515 D transposase 787295..788515 Lactobacillus fermentum IFO 3956 6232971 YP_001843493.1 CDS LAF_0677 NC_010610.1 789505 790557 D transposase 789505..790557 Lactobacillus fermentum IFO 3956 6232972 YP_001843494.1 CDS LAF_0678 NC_010610.1 790738 791925 D transposase 790738..791925 Lactobacillus fermentum IFO 3956 6232973 YP_001843495.1 CDS LAF_0679 NC_010610.1 792069 792932 D ABC transporter ATP-binding protein 792069..792932 Lactobacillus fermentum IFO 3956 6232974 YP_001843496.1 CDS LAF_0680 NC_010610.1 792934 793779 D ABC transporter permease 792934..793779 Lactobacillus fermentum IFO 3956 6232975 YP_001843497.1 CDS LAF_0681 NC_010610.1 793858 794109 D transposase 793858..794109 Lactobacillus fermentum IFO 3956 6232976 YP_001843498.1 CDS LAF_0682 NC_010610.1 794304 795005 D transposase 794304..795005 Lactobacillus fermentum IFO 3956 6232977 YP_001843499.1 CDS LAF_0683 NC_010610.1 795975 796643 D transposase 795975..796643 Lactobacillus fermentum IFO 3956 6232978 YP_001843500.1 CDS LAF_0684 NC_010610.1 796989 797261 D hypothetical protein 796989..797261 Lactobacillus fermentum IFO 3956 6232979 YP_001843501.1 CDS LAF_0685 NC_010610.1 797298 798422 R hypothetical protein complement(797298..798422) Lactobacillus fermentum IFO 3956 6232980 YP_001843502.1 CDS LAF_0686 NC_010610.1 798409 799851 R hypothetical protein complement(798409..799851) Lactobacillus fermentum IFO 3956 6232981 YP_001843503.1 CDS LAF_0687 NC_010610.1 799985 800863 R transposase complement(799985..800863) Lactobacillus fermentum IFO 3956 6232982 YP_001843504.1 CDS LAF_0688 NC_010610.1 801929 803149 D transposase 801929..803149 Lactobacillus fermentum IFO 3956 6232983 YP_001843505.1 CDS LAF_0689 NC_010610.1 803571 804449 D transposase 803571..804449 Lactobacillus fermentum IFO 3956 6232984 YP_001843506.1 CDS LAF_0690 NC_010610.1 805003 807726 D hypothetical protein 805003..807726 Lactobacillus fermentum IFO 3956 6232985 YP_001843507.1 CDS LAF_0691 NC_010610.1 807928 809115 D transposase 807928..809115 Lactobacillus fermentum IFO 3956 6232986 YP_001843508.1 CDS LAF_0692 NC_010610.1 809208 810785 D hypothetical protein 809208..810785 Lactobacillus fermentum IFO 3956 6232987 YP_001843509.1 CDS LAF_0693 NC_010610.1 810793 811386 D hypothetical protein 810793..811386 Lactobacillus fermentum IFO 3956 6232988 YP_001843510.1 CDS LAF_0694 NC_010610.1 811413 812495 D hypothetical protein 811413..812495 Lactobacillus fermentum IFO 3956 6232989 YP_001843511.1 CDS LAF_0695 NC_010610.1 812476 813183 D hypothetical protein 812476..813183 Lactobacillus fermentum IFO 3956 6232990 YP_001843512.1 CDS LAF_0696 NC_010610.1 813168 813842 D hypothetical protein 813168..813842 Lactobacillus fermentum IFO 3956 6232991 YP_001843513.1 CDS LAF_0697 NC_010610.1 813856 814797 D hypothetical protein 813856..814797 Lactobacillus fermentum IFO 3956 6232992 YP_001843514.1 CDS LAF_0698 NC_010610.1 815613 816629 D transposase 815613..816629 Lactobacillus fermentum IFO 3956 6232993 YP_001843515.1 CDS LAF_0699 NC_010610.1 818216 819436 R transposase complement(818216..819436) Lactobacillus fermentum IFO 3956 6232994 YP_001843516.1 CDS LAF_0700 NC_010610.1 821035 822255 D transposase 821035..822255 Lactobacillus fermentum IFO 3956 6232995 YP_001843517.1 CDS LAF_0701 NC_010610.1 822783 823169 D hypothetical protein 822783..823169 Lactobacillus fermentum IFO 3956 6232996 YP_001843518.1 CDS LAF_0702 NC_010610.1 824323 824931 D transposase 824323..824931 Lactobacillus fermentum IFO 3956 6232997 YP_001843519.1 CDS LAF_0703 NC_010610.1 825047 825367 R hypothetical protein complement(825047..825367) Lactobacillus fermentum IFO 3956 6233493 YP_001843520.1 CDS LAF_0704 NC_010610.1 825496 826719 D hypothetical protein 825496..826719 Lactobacillus fermentum IFO 3956 6233494 YP_001843521.1 CDS LAF_0705 NC_010610.1 826741 828075 R amino acid transporter complement(826741..828075) Lactobacillus fermentum IFO 3956 6233495 YP_001843522.1 CDS LAF_0706 NC_010610.1 828165 828854 D hypothetical protein 828165..828854 Lactobacillus fermentum IFO 3956 6233496 YP_001843523.1 CDS LAF_0707 NC_010610.1 829093 830262 D hydroxymethylglutaryl-CoA synthase 829093..830262 Lactobacillus fermentum IFO 3956 6233497 YP_001843524.1 CDS LAF_0708 NC_010610.1 830611 831237 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(830611..831237) Lactobacillus fermentum IFO 3956 6233498 YP_001843525.1 CDS LAF_0709 NC_010610.1 831393 831644 D hypothetical protein 831393..831644 Lactobacillus fermentum IFO 3956 6233499 YP_001843526.1 CDS LAF_0710 NC_010610.1 831694 831948 D hypothetical protein 831694..831948 Lactobacillus fermentum IFO 3956 6233500 YP_001843527.1 CDS LAF_0711 NC_010610.1 832016 832648 R 1-acylglycerol-3-phosphate O-acyltransferase complement(832016..832648) Lactobacillus fermentum IFO 3956 6233501 YP_001843528.1 CDS LAF_0712 NC_010610.1 832744 833496 D hypothetical protein 832744..833496 Lactobacillus fermentum IFO 3956 6233502 YP_001843529.1 CDS LAF_0713 NC_010610.1 833489 833779 D hypothetical protein 833489..833779 Lactobacillus fermentum IFO 3956 6233503 YP_001843530.1 CDS rpsB NC_010610.1 833933 834712 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 833933..834712 Lactobacillus fermentum IFO 3956 6233504 YP_001843531.1 CDS tsf NC_010610.1 834803 835681 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 834803..835681 Lactobacillus fermentum IFO 3956 6233505 YP_001843532.1 CDS pyrH NC_010610.1 835762 836487 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 835762..836487 Lactobacillus fermentum IFO 3956 6233506 YP_001843533.1 CDS frr NC_010610.1 836487 837047 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 836487..837047 Lactobacillus fermentum IFO 3956 6233507 YP_001843534.1 CDS LAF_0718 NC_010610.1 837174 837947 D undecaprenyl diphosphate synthase 837174..837947 Lactobacillus fermentum IFO 3956 6233508 YP_001843535.1 CDS LAF_0719 NC_010610.1 837964 838752 D phosphatidate cytidylyltransferase 837964..838752 Lactobacillus fermentum IFO 3956 6233509 YP_001843536.1 CDS LAF_0720 NC_010610.1 838774 840045 D zinc metalloprotease 838774..840045 Lactobacillus fermentum IFO 3956 6233510 YP_001843537.1 CDS LAF_0721 NC_010610.1 840079 841800 D prolyl-tRNA synthase 840079..841800 Lactobacillus fermentum IFO 3956 6233511 YP_001843538.1 CDS polC NC_010610.1 841940 846283 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 841940..846283 Lactobacillus fermentum IFO 3956 6233512 YP_001843539.1 CDS argD NC_010610.1 846406 847557 R acetylornithine aminotransferase complement(846406..847557) Lactobacillus fermentum IFO 3956 6233513 YP_001843540.1 CDS LAF_0724 NC_010610.1 847570 848316 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(847570..848316) Lactobacillus fermentum IFO 3956 6233514 YP_001843541.1 CDS argJ NC_010610.1 848326 849489 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(848326..849489) Lactobacillus fermentum IFO 3956 6233515 YP_001843542.1 CDS argC NC_010610.1 849554 850579 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(849554..850579) Lactobacillus fermentum IFO 3956 6233516 YP_001843543.1 CDS LAF_0727 NC_010610.1 850825 851895 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 850825..851895 Lactobacillus fermentum IFO 3956 6233517 YP_001843544.1 CDS LAF_0728 NC_010610.1 851888 854977 D carbamoyl-phosphate synthase large subunit 851888..854977 Lactobacillus fermentum IFO 3956 6233518 YP_001843545.1 CDS LAF_0729 NC_010610.1 855130 855609 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 855130..855609 Lactobacillus fermentum IFO 3956 6233519 YP_001843546.1 CDS LAF_0730 NC_010610.1 855629 856855 D transcription termination-antitermination factor NusA 855629..856855 Lactobacillus fermentum IFO 3956 6233520 YP_001843547.1 CDS LAF_0731 NC_010610.1 856892 857194 D hypothetical protein 856892..857194 Lactobacillus fermentum IFO 3956 6233521 YP_001843548.1 CDS LAF_0732 NC_010610.1 857187 857510 D ribosomal protein 857187..857510 Lactobacillus fermentum IFO 3956 6233522 YP_001843549.1 CDS infB NC_010610.1 857515 859842 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 857515..859842 Lactobacillus fermentum IFO 3956 6233523 YP_001843550.1 CDS rbfA NC_010610.1 859855 860217 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 859855..860217 Lactobacillus fermentum IFO 3956 6233524 YP_001843551.1 CDS truB NC_010610.1 860287 861183 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 860287..861183 Lactobacillus fermentum IFO 3956 6233525 YP_001843552.1 CDS LAF_0736 NC_010610.1 861194 862159 D riboflavin biosynthesis protein 861194..862159 Lactobacillus fermentum IFO 3956 6233526 YP_001843553.1 CDS LAF_0737 NC_010610.1 862274 863662 D multidrug transport protein 862274..863662 Lactobacillus fermentum IFO 3956 6233527 YP_001843554.1 CDS LAF_0738 NC_010610.1 865704 867041 R sugar transport protein complement(865704..867041) Lactobacillus fermentum IFO 3956 6233528 YP_001843555.1 CDS LAF_0739 NC_010610.1 867050 868744 R alpha-glucosidase complement(867050..868744) Lactobacillus fermentum IFO 3956 6233529 YP_001843556.1 CDS LAF_0740 NC_010610.1 868902 869888 D transcription regulator 868902..869888 Lactobacillus fermentum IFO 3956 6233530 YP_001843557.1 CDS LAF_0741 NC_010610.1 871786 872958 D 1,3-propanediol dehydrogenase 871786..872958 Lactobacillus fermentum IFO 3956 6233531 YP_001843558.1 CDS LAF_0742 NC_010610.1 874609 875574 D 2-dehydropantoate 2-reductase 874609..875574 Lactobacillus fermentum IFO 3956 6233532 YP_001843559.1 CDS LAF_0743 NC_010610.1 875920 876273 R hypothetical protein complement(875920..876273) Lactobacillus fermentum IFO 3956 6233533 YP_001843560.1 CDS LAF_0744 NC_010610.1 877072 878400 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(877072..878400) Lactobacillus fermentum IFO 3956 6233534 YP_001843561.1 CDS LAF_0745 NC_010610.1 878690 880090 R amino acid transporter complement(878690..880090) Lactobacillus fermentum IFO 3956 6233535 YP_001843562.1 CDS LAF_0746 NC_010610.1 880341 880643 D hypothetical protein 880341..880643 Lactobacillus fermentum IFO 3956 6233536 YP_001843563.1 CDS LAF_0747 NC_010610.1 880667 881545 D transposase 880667..881545 Lactobacillus fermentum IFO 3956 6233537 YP_001843564.1 CDS LAF_0748 NC_010610.1 882386 882841 R hypothetical protein complement(882386..882841) Lactobacillus fermentum IFO 3956 6233538 YP_001843565.1 CDS hrcA NC_010610.1 882868 883923 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 882868..883923 Lactobacillus fermentum IFO 3956 6233539 YP_001843566.1 CDS LAF_0750 NC_010610.1 883934 884521 D heat shock protein GrpE 883934..884521 Lactobacillus fermentum IFO 3956 6233540 YP_001843567.1 CDS dnaK NC_010610.1 884559 886415 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 884559..886415 Lactobacillus fermentum IFO 3956 6233541 YP_001843568.1 CDS LAF_0752 NC_010610.1 886527 887687 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 886527..887687 Lactobacillus fermentum IFO 3956 6233542 YP_001843569.1 CDS LAF_0753 NC_010610.1 888093 888641 D amidotransferase 888093..888641 Lactobacillus fermentum IFO 3956 6233543 YP_001843570.1 CDS LAF_0754 NC_010610.1 889628 890467 D catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 889628..890467 Lactobacillus fermentum IFO 3956 6233544 YP_001843571.1 CDS LAF_0755 NC_010610.1 890789 891949 D histidyl-tRNA synthase 890789..891949 Lactobacillus fermentum IFO 3956 6233545 YP_001843572.1 CDS LAF_0756 NC_010610.1 891942 892556 D ATP phosphoribosyltransferase 891942..892556 Lactobacillus fermentum IFO 3956 6233546 YP_001843573.1 CDS hisD NC_010610.1 892558 893841 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 892558..893841 Lactobacillus fermentum IFO 3956 6233547 YP_001843574.1 CDS hisB NC_010610.1 893843 894427 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 893843..894427 Lactobacillus fermentum IFO 3956 6233548 YP_001843575.1 CDS hisH NC_010610.1 894427 895035 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 894427..895035 Lactobacillus fermentum IFO 3956 6233549 YP_001843576.1 CDS LAF_0760 NC_010610.1 895032 895757 D phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 895032..895757 Lactobacillus fermentum IFO 3956 6232617 YP_001843577.1 CDS LAF_0761 NC_010610.1 895747 896532 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 895747..896532 Lactobacillus fermentum IFO 3956 6233269 YP_001843578.1 CDS LAF_0762 NC_010610.1 896502 896819 D phosphoribosyl-AMP cyclohydrolase 896502..896819 Lactobacillus fermentum IFO 3956 6233270 YP_001843579.1 CDS hisE NC_010610.1 896821 897141 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 896821..897141 Lactobacillus fermentum IFO 3956 6233271 YP_001843580.1 CDS LAF_0764 NC_010610.1 897154 898239 D histidinol-phosphate aminotransferase 897154..898239 Lactobacillus fermentum IFO 3956 6233272 YP_001843581.1 CDS LAF_0765 NC_010610.1 898307 900139 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 898307..900139 Lactobacillus fermentum IFO 3956 6233273 YP_001843582.1 CDS LAF_0766 NC_010610.1 900648 901151 R hypothetical protein complement(900648..901151) Lactobacillus fermentum IFO 3956 6233274 YP_001843583.1 CDS LAF_0767 NC_010610.1 901187 901810 R phosphoglycerate mutase complement(901187..901810) Lactobacillus fermentum IFO 3956 6233275 YP_001843584.1 CDS LAF_0768 NC_010610.1 903183 904256 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 903183..904256 Lactobacillus fermentum IFO 3956 6233276 YP_001843585.1 CDS LAF_0769 NC_010610.1 904268 905443 D D-3-phosphoglycerate dehydrogenase 904268..905443 Lactobacillus fermentum IFO 3956 6233277 YP_001843586.1 CDS LAF_0770 NC_010610.1 905657 907021 D hypothetical protein 905657..907021 Lactobacillus fermentum IFO 3956 6233278 YP_001843587.1 CDS LAF_0771 NC_010610.1 906994 907335 D hypothetical protein 906994..907335 Lactobacillus fermentum IFO 3956 6233279 YP_001843588.1 CDS LAF_0772 NC_010610.1 907352 907828 D hypothetical protein 907352..907828 Lactobacillus fermentum IFO 3956 6233280 YP_001843589.1 CDS ribH NC_010610.1 907989 908459 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; subunit beta of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(907989..908459) Lactobacillus fermentum IFO 3956 6233281 YP_001843590.1 CDS LAF_0774 NC_010610.1 908452 909645 R GTP cyclohydrolase II complement(908452..909645) Lactobacillus fermentum IFO 3956 6233282 YP_001843591.1 CDS LAF_0775 NC_010610.1 909632 910240 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(909632..910240) Lactobacillus fermentum IFO 3956 6233283 YP_001843592.1 CDS LAF_0776 NC_010610.1 910240 911298 R riboflavin biosynthesis protein complement(910240..911298) Lactobacillus fermentum IFO 3956 6233284 YP_001843593.1 CDS LAF_0777 NC_010610.1 911708 912040 R hypothetical protein complement(911708..912040) Lactobacillus fermentum IFO 3956 6233285 YP_001843594.1 CDS LAF_0778 NC_010610.1 913832 914587 D transposase 913832..914587 Lactobacillus fermentum IFO 3956 6233286 YP_001843595.1 CDS LAF_0779 NC_010610.1 916054 918024 R lactose transport protein complement(916054..918024) Lactobacillus fermentum IFO 3956 6233287 YP_001843596.1 CDS LAF_0780 NC_010610.1 918039 920099 R beta-galactosidase complement(918039..920099) Lactobacillus fermentum IFO 3956 6233288 YP_001843597.1 CDS LAF_0781 NC_010610.1 920380 921381 D transcriptional regulator 920380..921381 Lactobacillus fermentum IFO 3956 6233289 YP_001843598.1 CDS LAF_0782 NC_010610.1 921543 922025 R DNA-binding ferritin-like protein complement(921543..922025) Lactobacillus fermentum IFO 3956 6233290 YP_001843599.1 CDS LAF_0783 NC_010610.1 923660 924508 D transposase 923660..924508 Lactobacillus fermentum IFO 3956 6233291 YP_001843600.1 CDS LAF_0784 NC_010610.1 925101 926087 D transposase 925101..926087 Lactobacillus fermentum IFO 3956 6233292 YP_001843601.1 CDS LAF_0785 NC_010610.1 926293 927465 D cysteine desulfurase 926293..927465 Lactobacillus fermentum IFO 3956 6233293 YP_001843602.1 CDS LAF_0786 NC_010610.1 927755 928207 R transposase complement(927755..928207) Lactobacillus fermentum IFO 3956 6233294 YP_001843603.1 CDS LAF_0787 NC_010610.1 928286 929536 D transposase 928286..929536 Lactobacillus fermentum IFO 3956 6233295 YP_001843604.1 CDS LAF_0788 NC_010610.1 929721 930782 D peptidase 929721..930782 Lactobacillus fermentum IFO 3956 6233296 YP_001843605.1 CDS LAF_0789 NC_010610.1 930910 931521 R cadmium resistance transport protein complement(930910..931521) Lactobacillus fermentum IFO 3956 6233297 YP_001843606.1 CDS LAF_0790 NC_010610.1 931522 932202 R hypothetical protein complement(931522..932202) Lactobacillus fermentum IFO 3956 6233298 YP_001843607.1 CDS LAF_0791 NC_010610.1 932377 932916 D peptide methionine sulfoxide reductase 932377..932916 Lactobacillus fermentum IFO 3956 6233299 YP_001843608.1 CDS LAF_0792 NC_010610.1 933216 933359 D hypothetical protein 933216..933359 Lactobacillus fermentum IFO 3956 6233300 YP_001843609.1 CDS LAF_0793 NC_010610.1 933449 934297 D outer membrane lipoprotein precursor 933449..934297 Lactobacillus fermentum IFO 3956 6233301 YP_001843610.1 CDS LAF_0794 NC_010610.1 934310 934831 D peptide methionine sulfoxide reductase 934310..934831 Lactobacillus fermentum IFO 3956 6233302 YP_001843611.1 CDS LAF_0795 NC_010610.1 935655 936035 R hypothetical protein complement(935655..936035) Lactobacillus fermentum IFO 3956 6233303 YP_001843612.1 CDS LAF_0796 NC_010610.1 936025 936276 R hypothetical protein complement(936025..936276) Lactobacillus fermentum IFO 3956 6233304 YP_001843613.1 CDS LAF_0797 NC_010610.1 936403 937494 R benzyl alcohol dehydrogenase complement(936403..937494) Lactobacillus fermentum IFO 3956 6233305 YP_001843614.1 CDS LAF_0798 NC_010610.1 943978 944235 D hypothetical protein 943978..944235 Lactobacillus fermentum IFO 3956 6233306 YP_001843615.1 CDS LAF_0799 NC_010610.1 944325 944768 D phosphate-starvation-inducible protein PsiE 944325..944768 Lactobacillus fermentum IFO 3956 6233307 YP_001843616.1 CDS LAF_0800 NC_010610.1 944765 945595 D phosphomethylpyrimidine kinase 944765..945595 Lactobacillus fermentum IFO 3956 6233308 YP_001843617.1 CDS LAF_0801 NC_010610.1 945657 946298 R thiamine-phosphate pyrophosphorylase complement(945657..946298) Lactobacillus fermentum IFO 3956 6233309 YP_001843618.1 CDS LAF_0802 NC_010610.1 946463 947260 R phosphomethylpyrimidine kinase complement(946463..947260) Lactobacillus fermentum IFO 3956 6233310 YP_001843619.1 CDS LAF_0803 NC_010610.1 947283 948047 R hydroxyethylthiazole kinase complement(947283..948047) Lactobacillus fermentum IFO 3956 6233311 YP_001843620.1 CDS LAF_0804 NC_010610.1 948493 950460 D hypothetical protein 948493..950460 Lactobacillus fermentum IFO 3956 6233312 YP_001843621.1 CDS LAF_0805 NC_010610.1 950715 951281 D hypothetical protein 950715..951281 Lactobacillus fermentum IFO 3956 6233313 YP_001843622.1 CDS LAF_0806 NC_010610.1 951470 952423 R L-lactate dehydrogenase complement(951470..952423) Lactobacillus fermentum IFO 3956 6233314 YP_001843623.1 CDS LAF_0807 NC_010610.1 952983 953309 D hypothetical protein 952983..953309 Lactobacillus fermentum IFO 3956 6233315 YP_001843624.1 CDS prmA NC_010610.1 953365 954327 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 953365..954327 Lactobacillus fermentum IFO 3956 6233316 YP_001843625.1 CDS LAF_0809 NC_010610.1 954327 955076 D hypothetical protein 954327..955076 Lactobacillus fermentum IFO 3956 6233317 YP_001843626.1 CDS LAF_0810 NC_010610.1 955136 955477 D hypothetical protein 955136..955477 Lactobacillus fermentum IFO 3956 6233318 YP_001843627.1 CDS LAF_0811 NC_010610.1 955493 957727 D GTP pyrophosphokinase 955493..957727 Lactobacillus fermentum IFO 3956 6233319 YP_001843628.1 CDS LAF_0812 NC_010610.1 957737 958174 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 957737..958174 Lactobacillus fermentum IFO 3956 6233320 YP_001843629.1 CDS LAF_0813 NC_010610.1 958460 958969 D hypothetical protein 958460..958969 Lactobacillus fermentum IFO 3956 6233321 YP_001843630.1 CDS LAF_0814 NC_010610.1 959317 960513 D cystathionine beta-lyase 959317..960513 Lactobacillus fermentum IFO 3956 6233322 YP_001843631.1 CDS LAF_0815 NC_010610.1 960488 961615 D cystathionine gamma-lyase 960488..961615 Lactobacillus fermentum IFO 3956 6233323 YP_001843632.1 CDS LAF_0816 NC_010610.1 961938 962951 D hypothetical protein 961938..962951 Lactobacillus fermentum IFO 3956 6233324 YP_001843633.1 CDS LAF_0817 NC_010610.1 962966 963709 D ABC transporter ATP-binding protein 962966..963709 Lactobacillus fermentum IFO 3956 6233325 YP_001843634.1 CDS LAF_0818 NC_010610.1 964403 965107 D ABC transporter permease 964403..965107 Lactobacillus fermentum IFO 3956 6233326 YP_001843635.1 CDS LAF_0819 NC_010610.1 965128 965964 D ABC transporter substrate-binding protein 965128..965964 Lactobacillus fermentum IFO 3956 6233327 YP_001843636.1 CDS LAF_0820 NC_010610.1 966284 966943 D ABC transporter permease 966284..966943 Lactobacillus fermentum IFO 3956 6232268 YP_001843637.1 CDS LAF_0821 NC_010610.1 966924 967595 D ABC transporter permease 966924..967595 Lactobacillus fermentum IFO 3956 6232269 YP_001843638.1 CDS LAF_0822 NC_010610.1 967606 968346 D ABC transporter ATP-binding protein 967606..968346 Lactobacillus fermentum IFO 3956 6232270 YP_001843639.1 CDS LAF_0823 NC_010610.1 968362 969216 D ABC transporter substrate-binding protein 968362..969216 Lactobacillus fermentum IFO 3956 6232271 YP_001843640.1 CDS LAF_0824 NC_010610.1 969647 970390 D alcohol dehydrogenase 969647..970390 Lactobacillus fermentum IFO 3956 6232272 YP_001843641.1 CDS LAF_0825 NC_010610.1 970569 971735 R homoserine dehydrogenase complement(970569..971735) Lactobacillus fermentum IFO 3956 6232273 YP_001843642.1 CDS LAF_0826 NC_010610.1 971742 972566 R homoserine O-succinyltransferase complement(971742..972566) Lactobacillus fermentum IFO 3956 6232274 YP_001843643.1 CDS LAF_0827 NC_010610.1 972900 974318 R amino acid transporter complement(972900..974318) Lactobacillus fermentum IFO 3956 6232275 YP_001843644.1 CDS mmuM NC_010610.1 974400 975332 D converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase 974400..975332 Lactobacillus fermentum IFO 3956 6232276 YP_001843645.1 CDS LAF_0829 NC_010610.1 975432 976274 R hypothetical protein complement(975432..976274) Lactobacillus fermentum IFO 3956 6232277 YP_001843646.1 CDS LAF_0830 NC_010610.1 976276 977256 R N-acetylmuramoyl-L-alanine amidase complement(976276..977256) Lactobacillus fermentum IFO 3956 6232278 YP_001843647.1 CDS LAF_0831 NC_010610.1 977207 978235 R lipoate-protein ligase complement(977207..978235) Lactobacillus fermentum IFO 3956 6232279 YP_001843648.1 CDS hisS NC_010610.1 978612 979907 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 978612..979907 Lactobacillus fermentum IFO 3956 6232280 YP_001843649.1 CDS aspS NC_010610.1 979911 981686 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 979911..981686 Lactobacillus fermentum IFO 3956 6232281 YP_001843650.1 CDS LAF_0834 NC_010610.1 982362 983045 D hypothetical protein 982362..983045 Lactobacillus fermentum IFO 3956 6232282 YP_001843651.1 CDS rpsU NC_010610.1 983159 983347 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 983159..983347 Lactobacillus fermentum IFO 3956 6232283 YP_001843652.1 CDS LAF_0836 NC_010610.1 983412 983861 D hypothetical protein 983412..983861 Lactobacillus fermentum IFO 3956 6232284 YP_001843653.1 CDS LAF_0837 NC_010610.1 984009 984992 D phosphate starvation-inducible protein 984009..984992 Lactobacillus fermentum IFO 3956 6232285 YP_001843654.1 CDS LAF_0838 NC_010610.1 984992 985465 D hypothetical protein 984992..985465 Lactobacillus fermentum IFO 3956 6232286 YP_001843655.1 CDS LAF_0839 NC_010610.1 985443 985841 D diacylglycerol kinase 985443..985841 Lactobacillus fermentum IFO 3956 6232287 YP_001843656.1 CDS LAF_0840 NC_010610.1 985855 986760 D GTP-binding protein 985855..986760 Lactobacillus fermentum IFO 3956 6232288 YP_001843657.1 CDS LAF_0841 NC_010610.1 986873 987691 D DNA repair protein RecO 986873..987691 Lactobacillus fermentum IFO 3956 6232289 YP_001843658.1 CDS glyQ NC_010610.1 987959 988933 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 987959..988933 Lactobacillus fermentum IFO 3956 6232290 YP_001843659.1 CDS glyS NC_010610.1 988933 991011 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 988933..991011 Lactobacillus fermentum IFO 3956 6232291 YP_001843660.1 CDS LAF_0844 NC_010610.1 991163 993058 D DNA primase 991163..993058 Lactobacillus fermentum IFO 3956 6232292 YP_001843661.1 CDS LAF_0845 NC_010610.1 993058 994200 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 993058..994200 Lactobacillus fermentum IFO 3956 6232293 YP_001843662.1 CDS LAF_0846 NC_010610.1 994583 995425 R transposase complement(994583..995425) Lactobacillus fermentum IFO 3956 6232294 YP_001843663.1 CDS LAF_0847 NC_010610.1 995479 995730 R transposase complement(995479..995730) Lactobacillus fermentum IFO 3956 6232295 YP_001843664.1 CDS LAF_0848 NC_010610.1 996811 997353 D hypothetical protein 996811..997353 Lactobacillus fermentum IFO 3956 6232296 YP_001843665.1 CDS LAF_0849 NC_010610.1 997368 997619 D hypothetical protein 997368..997619 Lactobacillus fermentum IFO 3956 6232297 YP_001843666.1 CDS LAF_0850 NC_010610.1 998059 999345 D transposase 998059..999345 Lactobacillus fermentum IFO 3956 6232298 YP_001843667.1 CDS LAF_0851 NC_010610.1 999578 1000489 D thiamine biosynthesis protein 999578..1000489 Lactobacillus fermentum IFO 3956 6232299 YP_001843668.1 CDS dapF NC_010610.1 1000692 1001699 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1000692..1001699) Lactobacillus fermentum IFO 3956 6232300 YP_001843669.1 CDS LAF_0853 NC_010610.1 1001712 1003070 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(1001712..1003070) Lactobacillus fermentum IFO 3956 6232301 YP_001843670.1 CDS LAF_0854 NC_010610.1 1003542 1004861 D diaminopimelate decarboxylase 1003542..1004861 Lactobacillus fermentum IFO 3956 6232302 YP_001843671.1 CDS LAF_0855 NC_010610.1 1004886 1005599 D 2,3,4,5-tetrahydropyridine-2-carboxylate 1004886..1005599 Lactobacillus fermentum IFO 3956 6232303 YP_001843672.1 CDS LAF_0856 NC_010610.1 1005599 1006753 D amidohydrolase 1005599..1006753 Lactobacillus fermentum IFO 3956 6232304 YP_001843673.1 CDS LAF_0857 NC_010610.1 1006756 1007691 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1006756..1007691 Lactobacillus fermentum IFO 3956 6232305 YP_001843674.1 CDS LAF_0858 NC_010610.1 1007684 1008463 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1007684..1008463 Lactobacillus fermentum IFO 3956 6232306 YP_001843675.1 CDS LAF_0859 NC_010610.1 1008488 1009672 D amino acid aminotransferase 1008488..1009672 Lactobacillus fermentum IFO 3956 6232307 YP_001843676.1 CDS LAF_0860 NC_010610.1 1009687 1010739 D aspartate-semialdehyde dehydrogenase 1009687..1010739 Lactobacillus fermentum IFO 3956 6232308 YP_001843677.1 CDS LAF_0861 NC_010610.1 1010875 1012215 D potassium transport protein 1010875..1012215 Lactobacillus fermentum IFO 3956 6232309 YP_001843678.1 CDS LAF_0862 NC_010610.1 1012208 1012882 D potassium transport protein 1012208..1012882 Lactobacillus fermentum IFO 3956 6232310 YP_001843679.1 CDS LAF_0863 NC_010610.1 1012891 1013592 D hypothetical protein 1012891..1013592 Lactobacillus fermentum IFO 3956 6232311 YP_001843680.1 CDS LAF_0864 NC_010610.1 1013585 1014406 D hypothetical protein 1013585..1014406 Lactobacillus fermentum IFO 3956 6232312 YP_001843681.1 CDS LAF_0865 NC_010610.1 1014426 1015667 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1014426..1015667 Lactobacillus fermentum IFO 3956 6232313 YP_001843682.1 CDS LAF_0866 NC_010610.1 1015739 1015966 R hypothetical protein complement(1015739..1015966) Lactobacillus fermentum IFO 3956 6232314 YP_001843683.1 CDS LAF_0867 NC_010610.1 1016057 1019356 D DNA-directed DNA polymerase III subunit alpha 1016057..1019356 Lactobacillus fermentum IFO 3956 6232315 YP_001843684.1 CDS LAF_0868 NC_010610.1 1019494 1020915 D pyruvate kinase 1019494..1020915 Lactobacillus fermentum IFO 3956 6232316 YP_001843685.1 CDS LAF_0869 NC_010610.1 1021071 1021958 D hypothetical protein 1021071..1021958 Lactobacillus fermentum IFO 3956 6232317 YP_001843686.1 CDS LAF_0870 NC_010610.1 1021951 1022829 D integrase 1021951..1022829 Lactobacillus fermentum IFO 3956 6232318 YP_001843687.1 CDS LAF_0871 NC_010610.1 1022810 1023193 D hypothetical protein 1022810..1023193 Lactobacillus fermentum IFO 3956 6232319 YP_001843688.1 CDS LAF_0872 NC_010610.1 1023186 1023974 D hypothetical protein 1023186..1023974 Lactobacillus fermentum IFO 3956 6232320 YP_001843689.1 CDS LAF_0873 NC_010610.1 1023952 1024539 D hypothetical protein 1023952..1024539 Lactobacillus fermentum IFO 3956 6232321 YP_001843690.1 CDS LAF_0874 NC_010610.1 1024540 1025265 D pseudouridine synthase 1024540..1025265 Lactobacillus fermentum IFO 3956 6232322 YP_001843691.1 CDS LAF_0875 NC_010610.1 1025537 1026115 D hypothetical protein 1025537..1026115 Lactobacillus fermentum IFO 3956 6232323 YP_001843692.1 CDS LAF_0876 NC_010610.1 1026267 1027379 D hypothetical protein 1026267..1027379 Lactobacillus fermentum IFO 3956 6232324 YP_001843693.1 CDS LAF_0877 NC_010610.1 1027369 1028826 D DNA helicase 1027369..1028826 Lactobacillus fermentum IFO 3956 6232325 YP_001843694.1 CDS LAF_0878 NC_010610.1 1028878 1029441 D hypothetical protein 1028878..1029441 Lactobacillus fermentum IFO 3956 6232326 YP_001843695.1 CDS LAF_0879 NC_010610.1 1029465 1030145 D cytidylate kinase 1029465..1030145 Lactobacillus fermentum IFO 3956 6232327 YP_001843696.1 CDS rpsA NC_010610.1 1030222 1031454 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1030222..1031454 Lactobacillus fermentum IFO 3956 6232328 YP_001843697.1 CDS engA NC_010610.1 1031532 1032845 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1031532..1032845 Lactobacillus fermentum IFO 3956 6232329 YP_001843698.1 CDS LAF_0882 NC_010610.1 1033069 1033344 D DNA-binding protein 1033069..1033344 Lactobacillus fermentum IFO 3956 6232330 YP_001843699.1 CDS LAF_0883 NC_010610.1 1033423 1034685 D hypothetical protein 1033423..1034685 Lactobacillus fermentum IFO 3956 6232331 YP_001843700.1 CDS LAF_0884 NC_010610.1 1034799 1035740 R hypothetical protein complement(1034799..1035740) Lactobacillus fermentum IFO 3956 6232332 YP_001843701.1 CDS LAF_0885 NC_010610.1 1035822 1037024 D catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 1035822..1037024 Lactobacillus fermentum IFO 3956 6232333 YP_001843702.1 CDS LAF_0886 NC_010610.1 1037037 1038923 D ABC transporter ATP-binding protein 1037037..1038923 Lactobacillus fermentum IFO 3956 6232334 YP_001843703.1 CDS thyA NC_010610.1 1038989 1039948 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1038989..1039948 Lactobacillus fermentum IFO 3956 6232335 YP_001843704.1 CDS LAF_0888 NC_010610.1 1039960 1040463 D dihydrofolate reductase 1039960..1040463 Lactobacillus fermentum IFO 3956 6232336 YP_001843705.1 CDS LAF_0889 NC_010610.1 1040443 1041072 R hemolysin III complement(1040443..1041072) Lactobacillus fermentum IFO 3956 6232337 YP_001843706.1 CDS LAF_0890 NC_010610.1 1041239 1042081 D hypothetical protein 1041239..1042081 Lactobacillus fermentum IFO 3956 6232338 YP_001843707.1 CDS LAF_0891 NC_010610.1 1042215 1043393 R D-3-phosphoglycerate dehydrogenase complement(1042215..1043393) Lactobacillus fermentum IFO 3956 6232339 YP_001843708.1 CDS LAF_0892 NC_010610.1 1043463 1044089 D hypothetical protein 1043463..1044089 Lactobacillus fermentum IFO 3956 6232340 YP_001843709.1 CDS LAF_0893 NC_010610.1 1044220 1045137 D hypothetical protein 1044220..1045137 Lactobacillus fermentum IFO 3956 6232341 YP_001843710.1 CDS LAF_0894 NC_010610.1 1045141 1045734 D hypothetical protein 1045141..1045734 Lactobacillus fermentum IFO 3956 6232342 YP_001843711.1 CDS LAF_0895 NC_010610.1 1045744 1045968 D hypothetical protein 1045744..1045968 Lactobacillus fermentum IFO 3956 6232343 YP_001843712.1 CDS LAF_0896 NC_010610.1 1045979 1046851 D GTPase 1045979..1046851 Lactobacillus fermentum IFO 3956 6232344 YP_001843713.1 CDS rnhB NC_010610.1 1046844 1047614 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1046844..1047614 Lactobacillus fermentum IFO 3956 6232345 YP_001843714.1 CDS LAF_0898 NC_010610.1 1047667 1048542 D DNA processing protein 1047667..1048542 Lactobacillus fermentum IFO 3956 6232346 YP_001843715.1 CDS LAF_0899 NC_010610.1 1048625 1050757 D DNA topoisomerase I 1048625..1050757 Lactobacillus fermentum IFO 3956 6232347 YP_001843716.1 CDS LAF_0900 NC_010610.1 1050832 1051728 D integrase 1050832..1051728 Lactobacillus fermentum IFO 3956 6232348 YP_001843717.1 CDS LAF_0901 NC_010610.1 1051744 1052622 D hypothetical protein 1051744..1052622 Lactobacillus fermentum IFO 3956 6232349 YP_001843718.1 CDS LAF_0902 NC_010610.1 1052690 1053301 R hypothetical protein complement(1052690..1053301) Lactobacillus fermentum IFO 3956 6232875 YP_001843719.1 CDS LAF_0903 NC_010610.1 1053533 1055530 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1053533..1055530 Lactobacillus fermentum IFO 3956 6232876 YP_001843720.1 CDS LAF_0904 NC_010610.1 1055538 1058015 D topoisomerase IV subunit A 1055538..1058015 Lactobacillus fermentum IFO 3956 6232877 YP_001843721.1 CDS LAF_0905 NC_010610.1 1058081 1058596 D hypothetical protein 1058081..1058596 Lactobacillus fermentum IFO 3956 6232878 YP_001843722.1 CDS LAF_0906 NC_010610.1 1058707 1059639 D inorganic pyrophosphatase 1058707..1059639 Lactobacillus fermentum IFO 3956 6232879 YP_001843723.1 CDS LAF_0907 NC_010610.1 1059824 1060225 D hypothetical protein 1059824..1060225 Lactobacillus fermentum IFO 3956 6232880 YP_001843724.1 CDS LAF_0908 NC_010610.1 1060235 1060660 D peptide methionine sulfoxide reductase 1060235..1060660 Lactobacillus fermentum IFO 3956 6232881 YP_001843725.1 CDS LAF_0909 NC_010610.1 1060813 1061322 D phosphinothricin N-acetyltransferase 1060813..1061322 Lactobacillus fermentum IFO 3956 6232882 YP_001843726.1 CDS LAF_0910 NC_010610.1 1061285 1061770 D hypothetical protein 1061285..1061770 Lactobacillus fermentum IFO 3956 6232883 YP_001843727.1 CDS LAF_0911 NC_010610.1 1061927 1063285 D cytosine transport protein 1061927..1063285 Lactobacillus fermentum IFO 3956 6232884 YP_001843728.1 CDS LAF_0912 NC_010610.1 1063288 1064526 D cytosine deaminase 1063288..1064526 Lactobacillus fermentum IFO 3956 6232885 YP_001843729.1 CDS LAF_0913 NC_010610.1 1064674 1066398 D hypothetical protein 1064674..1066398 Lactobacillus fermentum IFO 3956 6232886 YP_001843730.1 CDS LAF_0914 NC_010610.1 1066494 1066865 D hypothetical protein 1066494..1066865 Lactobacillus fermentum IFO 3956 6232887 YP_001843731.1 CDS LAF_0915 NC_010610.1 1066880 1068226 D recombination factor protein RarA 1066880..1068226 Lactobacillus fermentum IFO 3956 6232888 YP_001843732.1 CDS LAF_0916 NC_010610.1 1068223 1068903 D hypothetical protein 1068223..1068903 Lactobacillus fermentum IFO 3956 6232889 YP_001843733.1 CDS LAF_0917 NC_010610.1 1069481 1070839 D oxalate-formate antiporter 1069481..1070839 Lactobacillus fermentum IFO 3956 6232890 YP_001843734.1 CDS LAF_0918 NC_010610.1 1070992 1072278 R transposase complement(1070992..1072278) Lactobacillus fermentum IFO 3956 6232891 YP_001843735.1 CDS LAF_0919 NC_010610.1 1072445 1072648 R hypothetical protein complement(1072445..1072648) Lactobacillus fermentum IFO 3956 6232892 YP_001843736.1 CDS LAF_0920 NC_010610.1 1074392 1075144 D hypothetical protein 1074392..1075144 Lactobacillus fermentum IFO 3956 6232893 YP_001843737.1 CDS LAF_0921 NC_010610.1 1075197 1076654 R arginine-ornithine antiporter complement(1075197..1076654) Lactobacillus fermentum IFO 3956 6232894 YP_001843738.1 CDS LAF_0922 NC_010610.1 1076833 1077864 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1076833..1077864) Lactobacillus fermentum IFO 3956 6232895 YP_001843739.1 CDS LAF_0923 NC_010610.1 1078502 1079143 R acetyltransferase complement(1078502..1079143) Lactobacillus fermentum IFO 3956 6232896 YP_001843740.1 CDS LAF_0924 NC_010610.1 1079257 1079754 D acetyltransferase 1079257..1079754 Lactobacillus fermentum IFO 3956 6232897 YP_001843741.1 CDS LAF_0925 NC_010610.1 1079899 1080594 R hypothetical protein complement(1079899..1080594) Lactobacillus fermentum IFO 3956 6232898 YP_001843742.1 CDS LAF_0926 NC_010610.1 1080802 1081359 R Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase complement(1080802..1081359) Lactobacillus fermentum IFO 3956 6232899 YP_001843743.1 CDS LAF_0927 NC_010610.1 1081697 1083073 D transport protein 1081697..1083073 Lactobacillus fermentum IFO 3956 6232900 YP_001843744.1 CDS LAF_0928 NC_010610.1 1083213 1084298 D ornithine cyclodeaminase 1083213..1084298 Lactobacillus fermentum IFO 3956 6232901 YP_001843745.1 CDS LAF_0929 NC_010610.1 1084310 1085446 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 1084310..1085446 Lactobacillus fermentum IFO 3956 6232902 YP_001843746.1 CDS LAF_0930 NC_010610.1 1085637 1085786 D hypothetical protein 1085637..1085786 Lactobacillus fermentum IFO 3956 6232903 YP_001843747.1 CDS LAF_0931 NC_010610.1 1086205 1086900 D hypothetical protein 1086205..1086900 Lactobacillus fermentum IFO 3956 6232904 YP_001843748.1 CDS LAF_0932 NC_010610.1 1087617 1088507 R hypothetical protein complement(1087617..1088507) Lactobacillus fermentum IFO 3956 6232905 YP_001843749.1 CDS LAF_0933 NC_010610.1 1088526 1089050 R acetyltransferase complement(1088526..1089050) Lactobacillus fermentum IFO 3956 6232906 YP_001843750.1 CDS LAF_0934 NC_010610.1 1089162 1089344 R hypothetical protein complement(1089162..1089344) Lactobacillus fermentum IFO 3956 6232907 YP_001843751.1 CDS LAF_0935 NC_010610.1 1089398 1090324 D hypothetical protein 1089398..1090324 Lactobacillus fermentum IFO 3956 6232908 YP_001843752.1 CDS LAF_0936 NC_010610.1 1090358 1091269 R oxidoreductase complement(1090358..1091269) Lactobacillus fermentum IFO 3956 6232909 YP_001843753.1 CDS LAF_0937 NC_010610.1 1091323 1091817 R hypothetical protein complement(1091323..1091817) Lactobacillus fermentum IFO 3956 6232910 YP_001843754.1 CDS LAF_0938 NC_010610.1 1091824 1092654 R pyridoxal kinase complement(1091824..1092654) Lactobacillus fermentum IFO 3956 6232911 YP_001843755.1 CDS LAF_0939 NC_010610.1 1092841 1094094 R isocitrate dehydrogenase complement(1092841..1094094) Lactobacillus fermentum IFO 3956 6232912 YP_001843756.1 CDS xerS NC_010610.1 1094855 1095934 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 1094855..1095934 Lactobacillus fermentum IFO 3956 6232913 YP_001843757.1 CDS LAF_0941 NC_010610.1 1095936 1096862 D choloylglycine hydrolase 1095936..1096862 Lactobacillus fermentum IFO 3956 6232914 YP_001843758.1 CDS LAF_0942 NC_010610.1 1096890 1098068 R aminotransferase complement(1096890..1098068) Lactobacillus fermentum IFO 3956 6232915 YP_001843759.1 CDS LAF_0943 NC_010610.1 1098494 1099546 D dehydrogenase 1098494..1099546 Lactobacillus fermentum IFO 3956 6232916 YP_001843760.1 CDS LAF_0944 NC_010610.1 1099639 1100598 R oxidoreductase complement(1099639..1100598) Lactobacillus fermentum IFO 3956 6232917 YP_001843761.1 CDS LAF_0945 NC_010610.1 1100614 1101243 R glycine/betaine ABC transporter permease complement(1100614..1101243) Lactobacillus fermentum IFO 3956 6232918 YP_001843762.1 CDS LAF_0946 NC_010610.1 1101240 1102007 R glycine/betaine ABC transporter ATP-binding protein complement(1101240..1102007) Lactobacillus fermentum IFO 3956 6232919 YP_001843763.1 CDS LAF_0947 NC_010610.1 1101988 1102671 R glycine/betaine ABC transporter permease complement(1101988..1102671) Lactobacillus fermentum IFO 3956 6232920 YP_001843764.1 CDS LAF_0948 NC_010610.1 1102783 1103685 R glycine/betaine ABC transporter substrate-binding protein complement(1102783..1103685) Lactobacillus fermentum IFO 3956 6232921 YP_001843765.1 CDS LAF_0949 NC_010610.1 1103826 1104275 D transcription regulator 1103826..1104275 Lactobacillus fermentum IFO 3956 6232922 YP_001843766.1 CDS LAF_0950 NC_010610.1 1104313 1104738 R hypothetical protein complement(1104313..1104738) Lactobacillus fermentum IFO 3956 6232923 YP_001843767.1 CDS LAF_0951 NC_010610.1 1104738 1105160 R acetyltransferase complement(1104738..1105160) Lactobacillus fermentum IFO 3956 6232924 YP_001843768.1 CDS LAF_0952 NC_010610.1 1105352 1105486 R hypothetical protein complement(1105352..1105486) Lactobacillus fermentum IFO 3956 6232925 YP_001843769.1 CDS LAF_0953 NC_010610.1 1105535 1105780 R hypothetical protein complement(1105535..1105780) Lactobacillus fermentum IFO 3956 6232926 YP_001843770.1 CDS LAF_0954 NC_010610.1 1105865 1106470 R oxidoreductase complement(1105865..1106470) Lactobacillus fermentum IFO 3956 6232927 YP_001843771.1 CDS LAF_0955 NC_010610.1 1106527 1106811 R hypothetical protein complement(1106527..1106811) Lactobacillus fermentum IFO 3956 6232928 YP_001843772.1 CDS LAF_0956 NC_010610.1 1106824 1107150 R hypothetical protein complement(1106824..1107150) Lactobacillus fermentum IFO 3956 6232929 YP_001843773.1 CDS LAF_0957 NC_010610.1 1107232 1107852 R hypothetical protein complement(1107232..1107852) Lactobacillus fermentum IFO 3956 6232930 YP_001843774.1 CDS LAF_0958 NC_010610.1 1108162 1109064 R transport protein complement(1108162..1109064) Lactobacillus fermentum IFO 3956 6232931 YP_001843775.1 CDS LAF_0959 NC_010610.1 1109170 1109469 R hypothetical protein complement(1109170..1109469) Lactobacillus fermentum IFO 3956 6232932 YP_001843776.1 CDS LAF_0960 NC_010610.1 1110415 1110615 R dehydrogenase complement(1110415..1110615) Lactobacillus fermentum IFO 3956 6232933 YP_001843777.1 CDS LAF_0961 NC_010610.1 1112974 1113198 R hypothetical protein complement(1112974..1113198) Lactobacillus fermentum IFO 3956 6232934 YP_001843778.1 CDS LAF_0962 NC_010610.1 1114380 1115153 R hypothetical protein complement(1114380..1115153) Lactobacillus fermentum IFO 3956 6232935 YP_001843779.1 CDS LAF_0963 NC_010610.1 1115174 1115758 R 3-isopropylmalate dehydratase small subunit complement(1115174..1115758) Lactobacillus fermentum IFO 3956 6232936 YP_001843780.1 CDS LAF_0964 NC_010610.1 1115763 1117160 R 3-isopropylmalate dehydratase large subunit complement(1115763..1117160) Lactobacillus fermentum IFO 3956 6232937 YP_001843781.1 CDS LAF_0965 NC_010610.1 1117160 1118206 R 3-isopropylmalate dehydrogenase complement(1117160..1118206) Lactobacillus fermentum IFO 3956 6232938 YP_001843782.1 CDS LAF_0966 NC_010610.1 1118219 1119559 R transport protein complement(1118219..1119559) Lactobacillus fermentum IFO 3956 6232939 YP_001843783.1 CDS LAF_0967 NC_010610.1 1120528 1120755 R hypothetical protein complement(1120528..1120755) Lactobacillus fermentum IFO 3956 6232940 YP_001843784.1 CDS LAF_0968 NC_010610.1 1120802 1121182 R hypothetical protein complement(1120802..1121182) Lactobacillus fermentum IFO 3956 6232941 YP_001843785.1 CDS LAF_0969 NC_010610.1 1121217 1122038 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1121217..1122038 Lactobacillus fermentum IFO 3956 6232942 YP_001843786.1 CDS LAF_0970 NC_010610.1 1122048 1123472 D O-succinylbenzoate-CoA ligase 1122048..1123472 Lactobacillus fermentum IFO 3956 6232410 YP_001843787.1 CDS LAF_0971 NC_010610.1 1123520 1124713 D transport protein 1123520..1124713 Lactobacillus fermentum IFO 3956 6232961 YP_001843788.1 CDS LAF_0972 NC_010610.1 1124944 1126014 D alcohol dehydrogenase 1124944..1126014 Lactobacillus fermentum IFO 3956 6232024 YP_001843789.1 CDS LAF_0973 NC_010610.1 1126236 1127378 R cystathionine beta-lyase complement(1126236..1127378) Lactobacillus fermentum IFO 3956 6232025 YP_001843790.1 CDS LAF_0974 NC_010610.1 1127391 1128302 R cysteine synthase complement(1127391..1128302) Lactobacillus fermentum IFO 3956 6232026 YP_001843791.1 CDS LAF_0975 NC_010610.1 1128635 1128910 D ACT domain-containing protein; hypothetical protein 1128635..1128910 Lactobacillus fermentum IFO 3956 6232027 YP_001843792.1 CDS LAF_0976 NC_010610.1 1128920 1130263 D hypothetical protein 1128920..1130263 Lactobacillus fermentum IFO 3956 6232028 YP_001843793.1 CDS LAF_0977 NC_010610.1 1130454 1131410 R hypothetical protein complement(1130454..1131410) Lactobacillus fermentum IFO 3956 6232029 YP_001843794.1 CDS LAF_0978 NC_010610.1 1131467 1131859 D hypothetical protein 1131467..1131859 Lactobacillus fermentum IFO 3956 6232030 YP_001843795.1 CDS LAF_0979 NC_010610.1 1132081 1132281 R hypothetical protein complement(1132081..1132281) Lactobacillus fermentum IFO 3956 6232031 YP_001843796.1 CDS LAF_0980 NC_010610.1 1132286 1133347 R hypothetical protein complement(1132286..1133347) Lactobacillus fermentum IFO 3956 6232032 YP_001843797.1 CDS LAF_0981 NC_010610.1 1134861 1135847 D transposase 1134861..1135847 Lactobacillus fermentum IFO 3956 6232033 YP_001843798.1 CDS LAF_0982 NC_010610.1 1135930 1136316 R hypothetical protein complement(1135930..1136316) Lactobacillus fermentum IFO 3956 6232034 YP_001843799.1 CDS LAF_0983 NC_010610.1 1136366 1137040 R transport protein complement(1136366..1137040) Lactobacillus fermentum IFO 3956 6232035 YP_001843800.1 CDS LAF_0985 NC_010610.1 1137098 1137283 R hypothetical protein complement(1137098..1137283) Lactobacillus fermentum IFO 3956 6232036 YP_001843801.1 CDS LAF_0984 NC_010610.1 1137175 1138110 D hypothetical protein 1137175..1138110 Lactobacillus fermentum IFO 3956 6232038 YP_001843802.1 CDS LAF_0986 NC_010610.1 1138217 1140070 R hypothetical protein complement(1138217..1140070) Lactobacillus fermentum IFO 3956 6232037 YP_001843803.1 CDS LAF_0987 NC_010610.1 1140187 1141122 D transcriptional regulator 1140187..1141122 Lactobacillus fermentum IFO 3956 6232039 YP_001843804.1 CDS LAF_0988 NC_010610.1 1141219 1142076 D hypothetical protein 1141219..1142076 Lactobacillus fermentum IFO 3956 6232040 YP_001843805.1 CDS LAF_0989 NC_010610.1 1142171 1143343 D acetyl-CoA acetyltransferase 1142171..1143343 Lactobacillus fermentum IFO 3956 6232041 YP_001843806.1 CDS LAF_0990 NC_010610.1 1143353 1144453 D transport protein 1143353..1144453 Lactobacillus fermentum IFO 3956 6232042 YP_001843807.1 CDS LAF_0991 NC_010610.1 1144533 1145273 D transport protein 1144533..1145273 Lactobacillus fermentum IFO 3956 6232043 YP_001843808.1 CDS LAF_0992 NC_010610.1 1145467 1145964 R low temperature requirement C protein complement(1145467..1145964) Lactobacillus fermentum IFO 3956 6232044 YP_001843809.1 CDS LAF_0993 NC_010610.1 1145977 1147029 R hypothetical protein complement(1145977..1147029) Lactobacillus fermentum IFO 3956 6232045 YP_001843810.1 CDS LAF_0994 NC_010610.1 1147026 1148225 R hypothetical protein complement(1147026..1148225) Lactobacillus fermentum IFO 3956 6232046 YP_001843811.1 CDS LAF_0995 NC_010610.1 1148241 1148417 R hypothetical protein complement(1148241..1148417) Lactobacillus fermentum IFO 3956 6232047 YP_001843812.1 CDS LAF_0996 NC_010610.1 1148425 1149288 R hypothetical protein complement(1148425..1149288) Lactobacillus fermentum IFO 3956 6232048 YP_001843813.1 CDS LAF_0997 NC_010610.1 1149421 1151769 R hypothetical protein complement(1149421..1151769) Lactobacillus fermentum IFO 3956 6232049 YP_001843814.1 CDS LAF_0998 NC_010610.1 1152156 1153043 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 1152156..1153043 Lactobacillus fermentum IFO 3956 6232050 YP_001843815.1 CDS LAF_0999 NC_010610.1 1153134 1154021 R DNA-entry nuclease complement(1153134..1154021) Lactobacillus fermentum IFO 3956 6232051 YP_001843816.1 CDS LAF_1000 NC_010610.1 1154096 1155466 R dipeptidase complement(1154096..1155466) Lactobacillus fermentum IFO 3956 6232052 YP_001843817.1 CDS LAF_1001 NC_010610.1 1155466 1156197 R hypothetical protein complement(1155466..1156197) Lactobacillus fermentum IFO 3956 6232053 YP_001843818.1 CDS LAF_1002 NC_010610.1 1156261 1157247 R transposase complement(1156261..1157247) Lactobacillus fermentum IFO 3956 6232054 YP_001843819.1 CDS LAF_1003 NC_010610.1 1157414 1158799 R amino acid transporter complement(1157414..1158799) Lactobacillus fermentum IFO 3956 6232055 YP_001843820.1 CDS LAF_1004 NC_010610.1 1159074 1160036 R hypothetical protein complement(1159074..1160036) Lactobacillus fermentum IFO 3956 6232056 YP_001843821.1 CDS LAF_1005 NC_010610.1 1160353 1162131 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1160353..1162131) Lactobacillus fermentum IFO 3956 6232057 YP_001843822.1 CDS LAF_1006 NC_010610.1 1162291 1163526 D hypothetical protein 1162291..1163526 Lactobacillus fermentum IFO 3956 6232058 YP_001843823.1 CDS LAF_1007 NC_010610.1 1163530 1163823 D hypothetical protein 1163530..1163823 Lactobacillus fermentum IFO 3956 6232059 YP_001843824.1 CDS LAF_1008 NC_010610.1 1164304 1164741 R nucleoside diphosphate kinase complement(1164304..1164741) Lactobacillus fermentum IFO 3956 6232060 YP_001843825.1 CDS LAF_1009 NC_010610.1 1164747 1165289 R hypothetical protein complement(1164747..1165289) Lactobacillus fermentum IFO 3956 6232061 YP_001843826.1 CDS LAF_1010 NC_010610.1 1165742 1166014 R hypothetical protein complement(1165742..1166014) Lactobacillus fermentum IFO 3956 6232062 YP_001843827.1 CDS LAF_1011 NC_010610.1 1166154 1167269 R hypothetical protein complement(1166154..1167269) Lactobacillus fermentum IFO 3956 6232063 YP_001843828.1 CDS LAF_1012 NC_010610.1 1167749 1168579 R amino acid ABC transporter substrate-binding protein complement(1167749..1168579) Lactobacillus fermentum IFO 3956 6233553 YP_001843829.1 CDS LAF_1013 NC_010610.1 1170517 1171701 D aminotransferase 1170517..1171701 Lactobacillus fermentum IFO 3956 6232065 YP_001843830.1 CDS LAF_1014 NC_010610.1 1171877 1173208 R chlorohydrolase family protein complement(1171877..1173208) Lactobacillus fermentum IFO 3956 6232066 YP_001843831.1 CDS LAF_1015 NC_010610.1 1173330 1174481 R succinyl-diaminopimelate desuccinylase complement(1173330..1174481) Lactobacillus fermentum IFO 3956 6232067 YP_001843832.1 CDS LAF_1016 NC_010610.1 1174738 1174887 R hypothetical protein complement(1174738..1174887) Lactobacillus fermentum IFO 3956 6232068 YP_001843833.1 CDS LAF_1017 NC_010610.1 1175390 1175728 R arsenate reductase complement(1175390..1175728) Lactobacillus fermentum IFO 3956 6232069 YP_001843834.1 CDS LAF_1018 NC_010610.1 1175803 1176408 R glycerophosphodiester phosphodiesterase complement(1175803..1176408) Lactobacillus fermentum IFO 3956 6232070 YP_001843835.1 CDS LAF_1019 NC_010610.1 1177112 1177618 D transcription regulator 1177112..1177618 Lactobacillus fermentum IFO 3956 6232071 YP_001843836.1 CDS LAF_1020 NC_010610.1 1177670 1178437 R hypothetical protein complement(1177670..1178437) Lactobacillus fermentum IFO 3956 6232072 YP_001843837.1 CDS LAF_1021 NC_010610.1 1178430 1179071 R ABC transporter ATP-binding protein complement(1178430..1179071) Lactobacillus fermentum IFO 3956 6232073 YP_001843838.1 CDS LAF_1022 NC_010610.1 1179464 1181146 R catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase complement(1179464..1181146) Lactobacillus fermentum IFO 3956 6232074 YP_001843839.1 CDS LAF_1023 NC_010610.1 1181630 1183354 R hypothetical protein complement(1181630..1183354) Lactobacillus fermentum IFO 3956 6232075 YP_001843840.1 CDS LAF_1024 NC_010610.1 1183440 1184192 R hypothetical protein complement(1183440..1184192) Lactobacillus fermentum IFO 3956 6232076 YP_001843841.1 CDS LAF_1025 NC_010610.1 1184320 1184934 D hypothetical protein 1184320..1184934 Lactobacillus fermentum IFO 3956 6232077 YP_001843842.1 CDS LAF_1026 NC_010610.1 1187874 1189247 R type I site-specific deoxyribonuclease complement(1187874..1189247) Lactobacillus fermentum IFO 3956 6232078 YP_001843843.1 CDS LAF_1027 NC_010610.1 1190611 1192149 R hypothetical protein complement(1190611..1192149) Lactobacillus fermentum IFO 3956 6232079 YP_001843844.1 CDS LAF_1028 NC_010610.1 1192190 1192351 R hypothetical protein complement(1192190..1192351) Lactobacillus fermentum IFO 3956 6232080 YP_001843845.1 CDS LAF_1029 NC_010610.1 1192873 1193205 R hypothetical protein complement(1192873..1193205) Lactobacillus fermentum IFO 3956 6232735 YP_001843846.1 CDS LAF_1030 NC_010610.1 1193202 1193567 R hypothetical protein complement(1193202..1193567) Lactobacillus fermentum IFO 3956 6232825 YP_001843847.1 CDS LAF_1031 NC_010610.1 1193655 1194083 D hypothetical protein 1193655..1194083 Lactobacillus fermentum IFO 3956 6232826 YP_001843848.1 CDS LAF_1032 NC_010610.1 1194158 1194715 D acetyltransferase 1194158..1194715 Lactobacillus fermentum IFO 3956 6232827 YP_001843849.1 CDS LAF_1033 NC_010610.1 1194975 1196705 D hypothetical protein 1194975..1196705 Lactobacillus fermentum IFO 3956 6232828 YP_001843850.1 CDS LAF_1034 NC_010610.1 1196674 1197465 D hypothetical protein 1196674..1197465 Lactobacillus fermentum IFO 3956 6232829 YP_001843851.1 CDS LAF_1035 NC_010610.1 1197754 1198671 R transcriptional regulator complement(1197754..1198671) Lactobacillus fermentum IFO 3956 6232830 YP_001843852.1 CDS LAF_1036 NC_010610.1 1198743 1199018 D hypothetical protein 1198743..1199018 Lactobacillus fermentum IFO 3956 6232831 YP_001843853.1 CDS LAF_1037 NC_010610.1 1199045 1199503 R transcriptional regulator complement(1199045..1199503) Lactobacillus fermentum IFO 3956 6232832 YP_001843854.1 CDS LAF_1038 NC_010610.1 1200098 1201201 R integrase complement(1200098..1201201) Lactobacillus fermentum IFO 3956 6232833 YP_001843855.1 CDS LAF_1039 NC_010610.1 1201594 1202781 D transposase 1201594..1202781 Lactobacillus fermentum IFO 3956 6232834 YP_001843856.1 CDS LAF_1040 NC_010610.1 1205042 1206934 R helicase complement(1205042..1206934) Lactobacillus fermentum IFO 3956 6232835 YP_001843857.1 CDS LAF_1041 NC_010610.1 1208606 1209214 D transposase 1208606..1209214 Lactobacillus fermentum IFO 3956 6232836 YP_001843858.1 CDS LAF_1042 NC_010610.1 1209912 1212887 R restriction endonuclease complement(1209912..1212887) Lactobacillus fermentum IFO 3956 6232837 YP_001843859.1 CDS LAF_1043 NC_010610.1 1212892 1214613 R methyltransferase complement(1212892..1214613) Lactobacillus fermentum IFO 3956 6232838 YP_001843860.1 CDS LAF_1044 NC_010610.1 1214754 1215677 R transposase complement(1214754..1215677) Lactobacillus fermentum IFO 3956 6232839 YP_001843861.1 CDS LAF_1045 NC_010610.1 1216572 1217093 R cation-transport ATPase complement(1216572..1217093) Lactobacillus fermentum IFO 3956 6232840 YP_001843862.1 CDS LAF_1046 NC_010610.1 1217236 1218177 D transcriptional regulator 1217236..1218177 Lactobacillus fermentum IFO 3956 6232841 YP_001843863.1 CDS LAF_1047 NC_010610.1 1218379 1219899 D gluconate kinase 1218379..1219899 Lactobacillus fermentum IFO 3956 6232842 YP_001843864.1 CDS LAF_1048 NC_010610.1 1219921 1221267 D gluconate transport protein 1219921..1221267 Lactobacillus fermentum IFO 3956 6232843 YP_001843865.1 CDS LAF_1049 NC_010610.1 1221394 1222398 D transcriptional regulator 1221394..1222398 Lactobacillus fermentum IFO 3956 6232844 YP_001843866.1 CDS LAF_1050 NC_010610.1 1222411 1222752 D hypothetical protein 1222411..1222752 Lactobacillus fermentum IFO 3956 6232845 YP_001843867.1 CDS LAF_1051 NC_010610.1 1223005 1224192 R aspartate aminotransferase complement(1223005..1224192) Lactobacillus fermentum IFO 3956 6232846 YP_001843868.1 CDS LAF_1052 NC_010610.1 1224394 1224927 R hypothetical protein complement(1224394..1224927) Lactobacillus fermentum IFO 3956 6232847 YP_001843869.1 CDS LAF_1053 NC_010610.1 1225017 1225157 R hypothetical protein complement(1225017..1225157) Lactobacillus fermentum IFO 3956 6232848 YP_001843870.1 CDS LAF_1054 NC_010610.1 1225228 1226736 D glutamate-cysteine ligase 1225228..1226736 Lactobacillus fermentum IFO 3956 6232849 YP_001843871.1 CDS LAF_1055 NC_010610.1 1227619 1228977 R Na-H antiporter complement(1227619..1228977) Lactobacillus fermentum IFO 3956 6232850 YP_001843872.1 CDS LAF_1056 NC_010610.1 1229003 1229224 R hypothetical protein complement(1229003..1229224) Lactobacillus fermentum IFO 3956 6232851 YP_001843873.1 CDS LAF_1057 NC_010610.1 1229401 1229829 R hypothetical protein complement(1229401..1229829) Lactobacillus fermentum IFO 3956 6232852 YP_001843874.1 CDS LAF_1058 NC_010610.1 1229839 1230804 R hypothetical protein complement(1229839..1230804) Lactobacillus fermentum IFO 3956 6232853 YP_001843875.1 CDS LAF_1059 NC_010610.1 1230970 1231659 R nitrate reductase subunit gamma complement(1230970..1231659) Lactobacillus fermentum IFO 3956 6232854 YP_001843876.1 CDS LAF_1060 NC_010610.1 1231652 1232230 R nitrate reductase subunit delta complement(1231652..1232230) Lactobacillus fermentum IFO 3956 6232855 YP_001843877.1 CDS LAF_1061 NC_010610.1 1232223 1233782 R nitrate reductase subunit beta complement(1232223..1233782) Lactobacillus fermentum IFO 3956 6232856 YP_001843878.1 CDS LAF_1062 NC_010610.1 1233772 1237437 R nitrate reductase subunit alpha complement(1233772..1237437) Lactobacillus fermentum IFO 3956 6232857 YP_001843879.1 CDS LAF_1063 NC_010610.1 1237603 1238595 D molybdopterin biosynthesis protein MoeB 1237603..1238595 Lactobacillus fermentum IFO 3956 6232858 YP_001843880.1 CDS LAF_1064 NC_010610.1 1238617 1239114 D molybdopterin biosynthesis protein MoaB 1238617..1239114 Lactobacillus fermentum IFO 3956 6232859 YP_001843881.1 CDS LAF_1065 NC_010610.1 1239104 1240318 D molybdopterin biosynthesis protein MoeA 1239104..1240318 Lactobacillus fermentum IFO 3956 6232860 YP_001843882.1 CDS moaC NC_010610.1 1240786 1241283 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1240786..1241283 Lactobacillus fermentum IFO 3956 6232861 YP_001843883.1 CDS LAF_1067 NC_010610.1 1241280 1241825 D molybdopterin-guanine dinucleotide biosynthesis protein MobA 1241280..1241825 Lactobacillus fermentum IFO 3956 6231864 YP_001843884.1 CDS LAF_1068 NC_010610.1 1241825 1242088 D hypothetical protein 1241825..1242088 Lactobacillus fermentum IFO 3956 6231865 YP_001843885.1 CDS LAF_1069 NC_010610.1 1242155 1242589 D hypothetical protein 1242155..1242589 Lactobacillus fermentum IFO 3956 6231866 YP_001843886.1 CDS LAF_1070 NC_010610.1 1242612 1243679 D two-component sensor histidine kinase 1242612..1243679 Lactobacillus fermentum IFO 3956 6231867 YP_001843887.1 CDS LAF_1071 NC_010610.1 1243681 1244334 D two-component response regulator 1243681..1244334 Lactobacillus fermentum IFO 3956 6231868 YP_001843888.1 CDS LAF_1072 NC_010610.1 1244474 1244737 D hypothetical protein 1244474..1244737 Lactobacillus fermentum IFO 3956 6231869 YP_001843889.1 CDS LAF_1073 NC_010610.1 1244747 1245730 D hypothetical protein 1244747..1245730 Lactobacillus fermentum IFO 3956 6231870 YP_001843890.1 CDS LAF_1074 NC_010610.1 1245727 1246644 D hypothetical protein 1245727..1246644 Lactobacillus fermentum IFO 3956 6231871 YP_001843891.1 CDS LAF_1075 NC_010610.1 1246745 1246978 D hypothetical protein 1246745..1246978 Lactobacillus fermentum IFO 3956 6231872 YP_001843892.1 CDS ubiE NC_010610.1 1247197 1247913 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(1247197..1247913) Lactobacillus fermentum IFO 3956 6231873 YP_001843893.1 CDS LAF_1077 NC_010610.1 1248002 1248889 R hypothetical protein complement(1248002..1248889) Lactobacillus fermentum IFO 3956 6231874 YP_001843894.1 CDS LAF_1078 NC_010610.1 1248904 1249242 R hypothetical protein complement(1248904..1249242) Lactobacillus fermentum IFO 3956 6231875 YP_001843895.1 CDS LAF_1079 NC_010610.1 1249257 1250453 R nitrite extrusion protein complement(1249257..1250453) Lactobacillus fermentum IFO 3956 6231876 YP_001843896.1 CDS moaA NC_010610.1 1250459 1251457 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1250459..1251457) Lactobacillus fermentum IFO 3956 6231877 YP_001843897.1 CDS LAF_1081 NC_010610.1 1251467 1251712 R molybdenum cofactor biosynthesis protein D complement(1251467..1251712) Lactobacillus fermentum IFO 3956 6231878 YP_001843898.1 CDS LAF_1082 NC_010610.1 1251712 1252113 R molybdenum cofactor biosynthesis protein E complement(1251712..1252113) Lactobacillus fermentum IFO 3956 6231879 YP_001843899.1 CDS LAF_1083 NC_010610.1 1252468 1252866 D hypothetical protein 1252468..1252866 Lactobacillus fermentum IFO 3956 6231880 YP_001843900.1 CDS LAF_1084 NC_010610.1 1252853 1253851 D iron ABC transporter permease 1252853..1253851 Lactobacillus fermentum IFO 3956 6231881 YP_001843901.1 CDS LAF_1085 NC_010610.1 1253848 1254618 D iron ABC transporter ATP-binding protein 1253848..1254618 Lactobacillus fermentum IFO 3956 6231882 YP_001843902.1 CDS LAF_1086 NC_010610.1 1254885 1256108 D NADH dehydrogenase 1254885..1256108 Lactobacillus fermentum IFO 3956 6231883 YP_001843903.1 CDS LAF_1087 NC_010610.1 1256350 1256682 D hypothetical protein 1256350..1256682 Lactobacillus fermentum IFO 3956 6231884 YP_001843904.1 CDS LAF_1088 NC_010610.1 1256908 1258239 D hypothetical protein 1256908..1258239 Lactobacillus fermentum IFO 3956 6231885 YP_001843905.1 CDS LAF_1089 NC_010610.1 1258176 1259150 D hypothetical protein 1258176..1259150 Lactobacillus fermentum IFO 3956 6231886 YP_001843906.1 CDS LAF_1090 NC_010610.1 1259205 1260203 R transposase complement(1259205..1260203) Lactobacillus fermentum IFO 3956 6231887 YP_001843907.1 CDS LAF_1091 NC_010610.1 1260370 1261434 R iron ABC transporter substrate-binding protein complement(1260370..1261434) Lactobacillus fermentum IFO 3956 6231888 YP_001843908.1 CDS LAF_1092 NC_010610.1 1261596 1263002 R hypothetical protein complement(1261596..1263002) Lactobacillus fermentum IFO 3956 6231889 YP_001843909.1 CDS LAF_1093 NC_010610.1 1262989 1263459 R nitrogen fixation protein complement(1262989..1263459) Lactobacillus fermentum IFO 3956 6231890 YP_001843910.1 CDS LAF_1094 NC_010610.1 1263446 1264684 R aminotransferase complement(1263446..1264684) Lactobacillus fermentum IFO 3956 6231891 YP_001843911.1 CDS LAF_1095 NC_010610.1 1264668 1265963 R hypothetical protein complement(1264668..1265963) Lactobacillus fermentum IFO 3956 6231892 YP_001843912.1 CDS LAF_1096 NC_010610.1 1265975 1266772 R ABC transporter ATP-binding protein complement(1265975..1266772) Lactobacillus fermentum IFO 3956 6231893 YP_001843913.1 CDS LAF_1097 NC_010610.1 1267004 1267216 D hypothetical protein 1267004..1267216 Lactobacillus fermentum IFO 3956 6231894 YP_001843914.1 CDS LAF_1098 NC_010610.1 1267213 1269204 D ferrous iron transport protein B 1267213..1269204 Lactobacillus fermentum IFO 3956 6231895 YP_001843915.1 CDS LAF_1099 NC_010610.1 1269218 1269388 D hypothetical protein 1269218..1269388 Lactobacillus fermentum IFO 3956 6231896 YP_001843916.1 CDS LAF_1100 NC_010610.1 1269456 1270355 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(1269456..1270355) Lactobacillus fermentum IFO 3956 6231897 YP_001843917.1 CDS LAF_1101 NC_010610.1 1270437 1271423 D polyprenyl synthase 1270437..1271423 Lactobacillus fermentum IFO 3956 6231898 YP_001843918.1 CDS LAF_1102 NC_010610.1 1271464 1272447 R D-2-hydroxyisocaproate dehydrogenase complement(1271464..1272447) Lactobacillus fermentum IFO 3956 6231899 YP_001843919.1 CDS LAF_1103 NC_010610.1 1272449 1273609 R aspartate aminotransferase complement(1272449..1273609) Lactobacillus fermentum IFO 3956 6231900 YP_001843920.1 CDS LAF_1104 NC_010610.1 1273790 1274311 R shikimate kinase complement(1273790..1274311) Lactobacillus fermentum IFO 3956 6231901 YP_001843921.1 CDS LAF_1105 NC_010610.1 1274308 1275393 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(1274308..1275393) Lactobacillus fermentum IFO 3956 6231902 YP_001843922.1 CDS LAF_1106 NC_010610.1 1275394 1276692 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(1275394..1276692) Lactobacillus fermentum IFO 3956 6231903 YP_001843923.1 CDS LAF_1107 NC_010610.1 1276667 1277212 R hypothetical protein complement(1276667..1277212) Lactobacillus fermentum IFO 3956 6231904 YP_001843924.1 CDS LAF_1108 NC_010610.1 1277214 1278380 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1277214..1278380) Lactobacillus fermentum IFO 3956 6231905 YP_001843925.1 CDS LAF_1109 NC_010610.1 1278636 1279832 R transport protein complement(1278636..1279832) Lactobacillus fermentum IFO 3956 6231906 YP_001843926.1 CDS LAF_1110 NC_010610.1 1280377 1281840 R dipeptide/tripeptide transport protein complement(1280377..1281840) Lactobacillus fermentum IFO 3956 6231907 YP_001843927.1 CDS LAF_1111 NC_010610.1 1282176 1282991 D hypothetical protein 1282176..1282991 Lactobacillus fermentum IFO 3956 6233554 YP_001843928.1 CDS LAF_1112 NC_010610.1 1283045 1283908 D hypothetical protein 1283045..1283908 Lactobacillus fermentum IFO 3956 6231909 YP_001843929.1 CDS LAF_1113 NC_010610.1 1284007 1284861 R hypothetical protein complement(1284007..1284861) Lactobacillus fermentum IFO 3956 6231910 YP_001843930.1 CDS LAF_1114 NC_010610.1 1285194 1286576 D multidrug transport protein 1285194..1286576 Lactobacillus fermentum IFO 3956 6231911 YP_001843931.1 CDS LAF_1115 NC_010610.1 1286643 1286879 D hypothetical protein 1286643..1286879 Lactobacillus fermentum IFO 3956 6231912 YP_001843932.1 CDS LAF_1116 NC_010610.1 1287064 1289964 R hypothetical protein complement(1287064..1289964) Lactobacillus fermentum IFO 3956 6231913 YP_001843933.1 CDS LAF_1117 NC_010610.1 1290095 1290370 R hypothetical protein complement(1290095..1290370) Lactobacillus fermentum IFO 3956 6231914 YP_001843934.1 CDS LAF_1118 NC_010610.1 1290367 1290687 R hypothetical protein complement(1290367..1290687) Lactobacillus fermentum IFO 3956 6231915 YP_001843935.1 CDS LAF_1119 NC_010610.1 1290857 1292866 D potassium transport protein 1290857..1292866 Lactobacillus fermentum IFO 3956 6231916 YP_001843936.1 CDS LAF_1120 NC_010610.1 1293085 1293531 R hypothetical protein complement(1293085..1293531) Lactobacillus fermentum IFO 3956 6231917 YP_001843937.1 CDS LAF_1121 NC_010610.1 1293528 1295039 R glycerol kinase complement(1293528..1295039) Lactobacillus fermentum IFO 3956 6231918 YP_001843938.1 CDS LAF_1122 NC_010610.1 1295107 1295292 R 4-oxalocrotonate tautomerase complement(1295107..1295292) Lactobacillus fermentum IFO 3956 6231919 YP_001843939.1 CDS LAF_1123 NC_010610.1 1295357 1297207 R Na-H antiporter complement(1295357..1297207) Lactobacillus fermentum IFO 3956 6231920 YP_001843940.1 CDS LAF_1124 NC_010610.1 1297337 1298749 R dipeptidase complement(1297337..1298749) Lactobacillus fermentum IFO 3956 6231921 YP_001843941.1 CDS LAF_1125 NC_010610.1 1298770 1299669 R hypothetical protein complement(1298770..1299669) Lactobacillus fermentum IFO 3956 6231922 YP_001843942.1 CDS LAF_1126 NC_010610.1 1299662 1300972 R PTS system cellobiose-specific IIC component complement(1299662..1300972) Lactobacillus fermentum IFO 3956 6231923 YP_001843943.1 CDS LAF_1127 NC_010610.1 1301141 1301410 R 30S ribosomal protein S14 complement(1301141..1301410) Lactobacillus fermentum IFO 3956 6231924 YP_001843944.1 CDS LAF_1128 NC_010610.1 1301513 1302385 R hypothetical protein complement(1301513..1302385) Lactobacillus fermentum IFO 3956 6231925 YP_001843945.1 CDS LAF_1129 NC_010610.1 1304056 1305282 D multidrug transport protein 1304056..1305282 Lactobacillus fermentum IFO 3956 6231926 YP_001843946.1 CDS LAF_1130 NC_010610.1 1305446 1306834 D hypothetical protein 1305446..1306834 Lactobacillus fermentum IFO 3956 6231927 YP_001843947.1 CDS LAF_1131 NC_010610.1 1307021 1308247 D hypothetical protein 1307021..1308247 Lactobacillus fermentum IFO 3956 6231928 YP_001843948.1 CDS LAF_1132 NC_010610.1 1308454 1308666 R hypothetical protein complement(1308454..1308666) Lactobacillus fermentum IFO 3956 6231929 YP_001843949.1 CDS LAF_1133 NC_010610.1 1308639 1308974 R hypothetical protein complement(1308639..1308974) Lactobacillus fermentum IFO 3956 6231930 YP_001843950.1 CDS LAF_1134 NC_010610.1 1308996 1309154 R hypothetical protein complement(1308996..1309154) Lactobacillus fermentum IFO 3956 6231931 YP_001843951.1 CDS LAF_1135 NC_010610.1 1309282 1310403 R hypothetical protein complement(1309282..1310403) Lactobacillus fermentum IFO 3956 6231932 YP_001843952.1 CDS LAF_1136 NC_010610.1 1310458 1311477 R lipoate-protein ligase complement(1310458..1311477) Lactobacillus fermentum IFO 3956 6231933 YP_001843953.1 CDS LAF_1137 NC_010610.1 1311506 1312912 R dihydrolipoamide dehydrogenase complement(1311506..1312912) Lactobacillus fermentum IFO 3956 6231934 YP_001843954.1 CDS LAF_1138 NC_010610.1 1312919 1314208 R pyruvate dehydrogenase complex E2 component complement(1312919..1314208) Lactobacillus fermentum IFO 3956 6231935 YP_001843955.1 CDS LAF_1139 NC_010610.1 1314224 1315201 R pyruvate dehydrogenase complex E1 component subunit beta complement(1314224..1315201) Lactobacillus fermentum IFO 3956 6231936 YP_001843956.1 CDS LAF_1140 NC_010610.1 1315204 1316175 R pyruvate dehydrogenase complex E1 component subunit alpha complement(1315204..1316175) Lactobacillus fermentum IFO 3956 6231937 YP_001843957.1 CDS LAF_1141 NC_010610.1 1316646 1316966 D hypothetical protein 1316646..1316966 Lactobacillus fermentum IFO 3956 6231938 YP_001843958.1 CDS LAF_1142 NC_010610.1 1317248 1317574 R hypothetical protein complement(1317248..1317574) Lactobacillus fermentum IFO 3956 6231939 YP_001843959.1 CDS LAF_1143 NC_010610.1 1317571 1318296 R hypothetical protein complement(1317571..1318296) Lactobacillus fermentum IFO 3956 6232736 YP_001843960.1 CDS LAF_1144 NC_010610.1 1318280 1319788 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1318280..1319788) Lactobacillus fermentum IFO 3956 6232199 YP_001843961.1 CDS LAF_1145 NC_010610.1 1319903 1321180 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1319903..1321180 Lactobacillus fermentum IFO 3956 6232200 YP_001843962.1 CDS LAF_1146 NC_010610.1 1321190 1322050 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1321190..1322050 Lactobacillus fermentum IFO 3956 6232201 YP_001843963.1 CDS LAF_1147 NC_010610.1 1322347 1322871 R acetyltransferase complement(1322347..1322871) Lactobacillus fermentum IFO 3956 6232202 YP_001843964.1 CDS LAF_1148 NC_010610.1 1322972 1323613 R hypothetical protein complement(1322972..1323613) Lactobacillus fermentum IFO 3956 6232203 YP_001843965.1 CDS LAF_1149 NC_010610.1 1323736 1324392 D hypothetical protein 1323736..1324392 Lactobacillus fermentum IFO 3956 6232204 YP_001843966.1 CDS LAF_1150 NC_010610.1 1324389 1325132 R hypothetical protein complement(1324389..1325132) Lactobacillus fermentum IFO 3956 6232205 YP_001843967.1 CDS LAF_1151 NC_010610.1 1325406 1326017 R hypothetical protein complement(1325406..1326017) Lactobacillus fermentum IFO 3956 6232206 YP_001843968.1 CDS LAF_1152 NC_010610.1 1326014 1326892 R hypothetical protein complement(1326014..1326892) Lactobacillus fermentum IFO 3956 6232207 YP_001843969.1 CDS LAF_1153 NC_010610.1 1327083 1328774 D adherence protein 1327083..1328774 Lactobacillus fermentum IFO 3956 6232208 YP_001843970.1 CDS LAF_1154 NC_010610.1 1329904 1331124 D transposase 1329904..1331124 Lactobacillus fermentum IFO 3956 6232209 YP_001843971.1 CDS LAF_1155 NC_010610.1 1331313 1331729 R arsenate reductase complement(1331313..1331729) Lactobacillus fermentum IFO 3956 6232210 YP_001843972.1 CDS LAF_1156 NC_010610.1 1331741 1332778 R hypothetical protein complement(1331741..1332778) Lactobacillus fermentum IFO 3956 6232211 YP_001843973.1 CDS LAF_1157 NC_010610.1 1332829 1333146 R arsenical resistance operon repressor complement(1332829..1333146) Lactobacillus fermentum IFO 3956 6232212 YP_001843974.1 CDS LAF_1158 NC_010610.1 1333636 1334775 D transposase 1333636..1334775 Lactobacillus fermentum IFO 3956 6232213 YP_001843975.1 CDS LAF_1159 NC_010610.1 1335421 1336338 D transcriptional regulator 1335421..1336338 Lactobacillus fermentum IFO 3956 6232214 YP_001843976.1 CDS LAF_1160 NC_010610.1 1336456 1337091 D carbonic anhydrase 1336456..1337091 Lactobacillus fermentum IFO 3956 6232215 YP_001843977.1 CDS LAF_1161 NC_010610.1 1337284 1339788 R carbamoyl-phosphate synthase large subunit complement(1337284..1339788) Lactobacillus fermentum IFO 3956 6232216 YP_001843978.1 CDS LAF_1162 NC_010610.1 1339790 1340872 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1339790..1340872) Lactobacillus fermentum IFO 3956 6232217 YP_001843979.1 CDS LAF_1163 NC_010610.1 1340902 1341816 R pseudouridine synthase complement(1340902..1341816) Lactobacillus fermentum IFO 3956 6232218 YP_001843980.1 CDS LAF_1164 NC_010610.1 1341818 1342255 R signal peptidase complement(1341818..1342255) Lactobacillus fermentum IFO 3956 6232219 YP_001843981.1 CDS LAF_1165 NC_010610.1 1342255 1342689 R hypothetical protein complement(1342255..1342689) Lactobacillus fermentum IFO 3956 6232220 YP_001843982.1 CDS LAF_1166 NC_010610.1 1342702 1343103 D hypothetical protein 1342702..1343103 Lactobacillus fermentum IFO 3956 6232221 YP_001843983.1 CDS LAF_1167 NC_010610.1 1343259 1343861 R hypothetical protein complement(1343259..1343861) Lactobacillus fermentum IFO 3956 6232222 YP_001843984.1 CDS LAF_1168 NC_010610.1 1344085 1344948 R amino acid ABC transporter substrate-binding protein complement(1344085..1344948) Lactobacillus fermentum IFO 3956 6232223 YP_001843985.1 CDS LAF_1169 NC_010610.1 1345162 1345851 R amino acid ABC transporter permease complement(1345162..1345851) Lactobacillus fermentum IFO 3956 6232224 YP_001843986.1 CDS LAF_1170 NC_010610.1 1346743 1347045 D hypothetical protein 1346743..1347045 Lactobacillus fermentum IFO 3956 6232225 YP_001843987.1 CDS LAF_1171 NC_010610.1 1347116 1348336 R transposase complement(1347116..1348336) Lactobacillus fermentum IFO 3956 6232226 YP_001843988.1 CDS LAF_1172 NC_010610.1 1348408 1349286 D transposase 1348408..1349286 Lactobacillus fermentum IFO 3956 6232227 YP_001843989.1 CDS LAF_1173 NC_010610.1 1349272 1350165 R hypothetical protein complement(1349272..1350165) Lactobacillus fermentum IFO 3956 6232228 YP_001843990.1 CDS LAF_1174 NC_010610.1 1351648 1352496 D hypothetical protein 1351648..1352496 Lactobacillus fermentum IFO 3956 6232229 YP_001843991.1 CDS LAF_1175 NC_010610.1 1352628 1354106 D amidase 1352628..1354106 Lactobacillus fermentum IFO 3956 6232230 YP_001843992.1 CDS LAF_1176 NC_010610.1 1354257 1354991 D hypothetical protein 1354257..1354991 Lactobacillus fermentum IFO 3956 6232231 YP_001843993.1 CDS LAF_1177 NC_010610.1 1355319 1356452 R hypothetical protein complement(1355319..1356452) Lactobacillus fermentum IFO 3956 6232232 YP_001843994.1 CDS LAF_1178 NC_010610.1 1356495 1356944 R NTP pyrophosphohydrolase complement(1356495..1356944) Lactobacillus fermentum IFO 3956 6232233 YP_001843995.1 CDS LAF_1179 NC_010610.1 1356948 1358129 R hypothetical protein complement(1356948..1358129) Lactobacillus fermentum IFO 3956 6232234 YP_001843996.1 CDS LAF_1180 NC_010610.1 1358237 1360171 R elongation factor G complement(1358237..1360171) Lactobacillus fermentum IFO 3956 6232235 YP_001843997.1 CDS LAF_1181 NC_010610.1 1360705 1361073 R GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB complement(1360705..1361073) Lactobacillus fermentum IFO 3956 6232236 YP_001843998.1 CDS LAF_1182 NC_010610.1 1361172 1361768 R hypothetical protein complement(1361172..1361768) Lactobacillus fermentum IFO 3956 6232237 YP_001843999.1 CDS recU NC_010610.1 1361860 1362495 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 1361860..1362495 Lactobacillus fermentum IFO 3956 6232238 YP_001844000.1 CDS LAF_1184 NC_010610.1 1362488 1364752 D penicillin binding protein 1A 1362488..1364752 Lactobacillus fermentum IFO 3956 6232239 YP_001844001.1 CDS LAF_1185 NC_010610.1 1364867 1365778 R transport protein complement(1364867..1365778) Lactobacillus fermentum IFO 3956 6232240 YP_001844002.1 CDS LAF_1186 NC_010610.1 1365901 1366920 D oxidoreductase 1365901..1366920 Lactobacillus fermentum IFO 3956 6232241 YP_001844003.1 CDS LAF_1187 NC_010610.1 1367237 1368241 R hypothetical protein complement(1367237..1368241) Lactobacillus fermentum IFO 3956 6232242 YP_001844004.1 CDS LAF_1188 NC_010610.1 1368340 1369068 R DNA replication protein DnaD complement(1368340..1369068) Lactobacillus fermentum IFO 3956 6232243 YP_001844005.1 CDS LAF_1189 NC_010610.1 1369160 1370455 R asparaginyl-tRNA synthase complement(1369160..1370455) Lactobacillus fermentum IFO 3956 6232244 YP_001844006.1 CDS LAF_1190 NC_010610.1 1370482 1371000 R hypothetical protein complement(1370482..1371000) Lactobacillus fermentum IFO 3956 6232245 YP_001844007.1 CDS LAF_1191 NC_010610.1 1371051 1373882 R helicase complement(1371051..1373882) Lactobacillus fermentum IFO 3956 6232246 YP_001844008.1 CDS LAF_1192 NC_010610.1 1374121 1375056 D mevalonate kinase 1374121..1375056 Lactobacillus fermentum IFO 3956 6232247 YP_001844009.1 CDS LAF_1193 NC_010610.1 1375058 1376047 D mevalonate diphosphate decarboxylase 1375058..1376047 Lactobacillus fermentum IFO 3956 6232248 YP_001844010.1 CDS LAF_1194 NC_010610.1 1376067 1377176 D phosphomevalonate kinase 1376067..1377176 Lactobacillus fermentum IFO 3956 6232249 YP_001844011.1 CDS LAF_1195 NC_010610.1 1377232 1378317 D catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 1377232..1378317 Lactobacillus fermentum IFO 3956 6232250 YP_001844012.1 CDS LAF_1196 NC_010610.1 1378474 1379607 R phosphate ABC transporter ATP-binding protein complement(1378474..1379607) Lactobacillus fermentum IFO 3956 6232251 YP_001844013.1 CDS LAF_1197 NC_010610.1 1379817 1381004 R transposase complement(1379817..1381004) Lactobacillus fermentum IFO 3956 6232252 YP_001844014.1 CDS LAF_1198 NC_010610.1 1381027 1381545 D transposase 1381027..1381545 Lactobacillus fermentum IFO 3956 6232253 YP_001844015.1 CDS LAF_1199 NC_010610.1 1381596 1382969 R RNA methylase complement(1381596..1382969) Lactobacillus fermentum IFO 3956 6232254 YP_001844016.1 CDS LAF_1200 NC_010610.1 1383098 1383904 D hydrolase 1383098..1383904 Lactobacillus fermentum IFO 3956 6232255 YP_001844017.1 CDS LAF_1201 NC_010610.1 1384136 1385053 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1384136..1385053) Lactobacillus fermentum IFO 3956 6232256 YP_001844018.1 CDS carB NC_010610.1 1385066 1388245 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1385066..1388245) Lactobacillus fermentum IFO 3956 6232257 YP_001844019.1 CDS LAF_1203 NC_010610.1 1388245 1389327 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1388245..1389327) Lactobacillus fermentum IFO 3956 6232258 YP_001844020.1 CDS LAF_1204 NC_010610.1 1389329 1390618 R dihydroorotase complement(1389329..1390618) Lactobacillus fermentum IFO 3956 6232259 YP_001844021.1 CDS pyrB NC_010610.1 1390618 1391583 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(1390618..1391583) Lactobacillus fermentum IFO 3956 6232260 YP_001844022.1 CDS LAF_1206 NC_010610.1 1392253 1392555 D hypothetical protein 1392253..1392555 Lactobacillus fermentum IFO 3956 6232261 YP_001844023.1 CDS LAF_1207 NC_010610.1 1392579 1393457 D transposase 1392579..1393457 Lactobacillus fermentum IFO 3956 6232262 YP_001844024.1 CDS LAF_1208 NC_010610.1 1393892 1394182 R hypothetical protein complement(1393892..1394182) Lactobacillus fermentum IFO 3956 6232263 YP_001844025.1 CDS LAF_1209 NC_010610.1 1394192 1395223 R hypothetical protein complement(1394192..1395223) Lactobacillus fermentum IFO 3956 6232264 YP_001844026.1 CDS LAF_1210 NC_010610.1 1395220 1395876 R hypothetical protein complement(1395220..1395876) Lactobacillus fermentum IFO 3956 6232265 YP_001844027.1 CDS LAF_1211 NC_010610.1 1395880 1396758 R hypothetical protein complement(1395880..1396758) Lactobacillus fermentum IFO 3956 6232737 YP_001844028.1 CDS LAF_1212 NC_010610.1 1396780 1398681 R hypothetical protein complement(1396780..1398681) Lactobacillus fermentum IFO 3956 6232738 YP_001844029.1 CDS LAF_1213 NC_010610.1 1398678 1399418 R hypothetical protein complement(1398678..1399418) Lactobacillus fermentum IFO 3956 6232081 YP_001844030.1 CDS LAF_1214 NC_010610.1 1399484 1400704 R transposase complement(1399484..1400704) Lactobacillus fermentum IFO 3956 6232082 YP_001844031.1 CDS LAF_1215 NC_010610.1 1400770 1403208 R hypothetical protein complement(1400770..1403208) Lactobacillus fermentum IFO 3956 6232083 YP_001844032.1 CDS LAF_1216 NC_010610.1 1403441 1404319 R transposase complement(1403441..1404319) Lactobacillus fermentum IFO 3956 6232084 YP_001844033.1 CDS LAF_1217 NC_010610.1 1404343 1404645 R hypothetical protein complement(1404343..1404645) Lactobacillus fermentum IFO 3956 6232085 YP_001844034.1 CDS LAF_1218 NC_010610.1 1406212 1407498 D transposase 1406212..1407498 Lactobacillus fermentum IFO 3956 6232086 YP_001844035.1 CDS rplS NC_010610.1 1407591 1407950 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1407591..1407950) Lactobacillus fermentum IFO 3956 6232087 YP_001844036.1 CDS LAF_1220 NC_010610.1 1408071 1409498 R amino acid transporter complement(1408071..1409498) Lactobacillus fermentum IFO 3956 6232088 YP_001844037.1 CDS trmD NC_010610.1 1409509 1410267 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1409509..1410267) Lactobacillus fermentum IFO 3956 6232089 YP_001844038.1 CDS rimM NC_010610.1 1410267 1410776 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1410267..1410776) Lactobacillus fermentum IFO 3956 6232090 YP_001844039.1 CDS LAF_1223 NC_010610.1 1410901 1411161 R hypothetical protein complement(1410901..1411161) Lactobacillus fermentum IFO 3956 6232091 YP_001844040.1 CDS rpsP NC_010610.1 1411176 1411451 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1411176..1411451) Lactobacillus fermentum IFO 3956 6232092 YP_001844041.1 CDS LAF_1225 NC_010610.1 1411581 1412285 R phosphate uptake regulator complement(1411581..1412285) Lactobacillus fermentum IFO 3956 6232093 YP_001844042.1 CDS LAF_1226 NC_010610.1 1412300 1413055 R phosphate ABC transporter ATP-binding protein complement(1412300..1413055) Lactobacillus fermentum IFO 3956 6232094 YP_001844043.1 CDS LAF_1227 NC_010610.1 1413068 1413949 R phosphate ABC transporter permease complement(1413068..1413949) Lactobacillus fermentum IFO 3956 6232095 YP_001844044.1 CDS LAF_1228 NC_010610.1 1413951 1414850 R phosphate ABC transporter permease complement(1413951..1414850) Lactobacillus fermentum IFO 3956 6232096 YP_001844045.1 CDS LAF_1229 NC_010610.1 1414850 1415731 R phosphate ABC transporter substrate-binding protein complement(1414850..1415731) Lactobacillus fermentum IFO 3956 6232097 YP_001844046.1 CDS LAF_1230 NC_010610.1 1416018 1416722 D two-component response regulator 1416018..1416722 Lactobacillus fermentum IFO 3956 6232098 YP_001844047.1 CDS LAF_1231 NC_010610.1 1416763 1417560 R hypothetical protein complement(1416763..1417560) Lactobacillus fermentum IFO 3956 6232099 YP_001844048.1 CDS LAF_1232 NC_010610.1 1417616 1417771 R hypothetical protein complement(1417616..1417771) Lactobacillus fermentum IFO 3956 6232100 YP_001844049.1 CDS LAF_1233 NC_010610.1 1417833 1418018 R hypothetical protein complement(1417833..1418018) Lactobacillus fermentum IFO 3956 6232101 YP_001844050.1 CDS LAF_1234 NC_010610.1 1418229 1419683 R signal recognition particle protein complement(1418229..1419683) Lactobacillus fermentum IFO 3956 6232102 YP_001844051.1 CDS LAF_1235 NC_010610.1 1419846 1420187 R DNA-binding protein complement(1419846..1420187) Lactobacillus fermentum IFO 3956 6232103 YP_001844052.1 CDS LAF_1236 NC_010610.1 1420204 1421733 R signal recognition particle receptor complement(1420204..1421733) Lactobacillus fermentum IFO 3956 6232104 YP_001844053.1 CDS LAF_1237 NC_010610.1 1421749 1425312 R chromosome segregation protein complement(1421749..1425312) Lactobacillus fermentum IFO 3956 6232105 YP_001844054.1 CDS rnc NC_010610.1 1425326 1426024 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(1425326..1426024) Lactobacillus fermentum IFO 3956 6232106 YP_001844055.1 CDS acpP NC_010610.1 1426171 1426416 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1426171..1426416) Lactobacillus fermentum IFO 3956 6232107 YP_001844056.1 CDS LAF_1240 NC_010610.1 1426459 1427496 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1426459..1427496) Lactobacillus fermentum IFO 3956 6232108 YP_001844057.1 CDS LAF_1241 NC_010610.1 1427509 1429545 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1427509..1429545) Lactobacillus fermentum IFO 3956 6232109 YP_001844058.1 CDS LAF_1242 NC_010610.1 1429610 1431304 R hypothetical protein complement(1429610..1431304) Lactobacillus fermentum IFO 3956 6232110 YP_001844059.1 CDS LAF_1243 NC_010610.1 1431332 1431694 R hypothetical protein complement(1431332..1431694) Lactobacillus fermentum IFO 3956 6232111 YP_001844060.1 CDS rpmB NC_010610.1 1431841 1432029 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1431841..1432029) Lactobacillus fermentum IFO 3956 6232112 YP_001844061.1 CDS LAF_1245 NC_010610.1 1432150 1432809 R hypothetical protein complement(1432150..1432809) Lactobacillus fermentum IFO 3956 6232113 YP_001844062.1 CDS LAF_1246 NC_010610.1 1432877 1433530 R ribulose-phosphate 3-epimerase complement(1432877..1433530) Lactobacillus fermentum IFO 3956 6232114 YP_001844063.1 CDS LAF_1247 NC_010610.1 1433542 1434432 R hypothetical protein complement(1433542..1434432) Lactobacillus fermentum IFO 3956 6232115 YP_001844064.1 CDS LAF_1248 NC_010610.1 1434452 1436374 R serine/threonine protein kinase complement(1434452..1436374) Lactobacillus fermentum IFO 3956 6232116 YP_001844065.1 CDS LAF_1249 NC_010610.1 1436378 1437115 R serine/threonine specific protein phosphatase complement(1436378..1437115) Lactobacillus fermentum IFO 3956 6232117 YP_001844066.1 CDS LAF_1250 NC_010610.1 1437134 1438480 R rRNA methylase complement(1437134..1438480) Lactobacillus fermentum IFO 3956 6232118 YP_001844067.1 CDS LAF_1251 NC_010610.1 1438473 1439423 R methionyl-tRNA formyltransferase complement(1438473..1439423) Lactobacillus fermentum IFO 3956 6232119 YP_001844068.1 CDS LAF_1252 NC_010610.1 1439446 1441863 R primosomal protein N' complement(1439446..1441863) Lactobacillus fermentum IFO 3956 6232120 YP_001844069.1 CDS LAF_1253 NC_010610.1 1441835 1443064 R flavoprotein complement(1441835..1443064) Lactobacillus fermentum IFO 3956 6232121 YP_001844070.1 CDS LAF_1254 NC_010610.1 1443135 1443419 R DNA-directed RNA polymerase subunit omega complement(1443135..1443419) Lactobacillus fermentum IFO 3956 6232122 YP_001844071.1 CDS gmk NC_010610.1 1443416 1444036 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1443416..1444036) Lactobacillus fermentum IFO 3956 6232123 YP_001844072.1 CDS LAF_1256 NC_010610.1 1444091 1444546 D hypothetical protein 1444091..1444546 Lactobacillus fermentum IFO 3956 6232124 YP_001844073.1 CDS LAF_1257 NC_010610.1 1444638 1446332 R DNA repair protein RecN complement(1444638..1446332) Lactobacillus fermentum IFO 3956 6232125 YP_001844074.1 CDS LAF_1258 NC_010610.1 1446350 1446799 R arginine repressor complement(1446350..1446799) Lactobacillus fermentum IFO 3956 6232126 YP_001844075.1 CDS LAF_1259 NC_010610.1 1446813 1447628 R hemolysin complement(1446813..1447628) Lactobacillus fermentum IFO 3956 6232127 YP_001844076.1 CDS LAF_1260 NC_010610.1 1447638 1448513 R geranyltranstransferase complement(1447638..1448513) Lactobacillus fermentum IFO 3956 6232128 YP_001844077.1 CDS LAF_1261 NC_010610.1 1448513 1448806 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1448513..1448806) Lactobacillus fermentum IFO 3956 6232129 YP_001844078.1 CDS LAF_1262 NC_010610.1 1448806 1450254 R exodeoxyribonuclease VII large subunit complement(1448806..1450254) Lactobacillus fermentum IFO 3956 6232130 YP_001844079.1 CDS LAF_1263 NC_010610.1 1450255 1451112 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1450255..1451112) Lactobacillus fermentum IFO 3956 6232131 YP_001844080.1 CDS nusB NC_010610.1 1451290 1451709 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1451290..1451709) Lactobacillus fermentum IFO 3956 6232132 YP_001844081.1 CDS LAF_1265 NC_010610.1 1451709 1452149 R hypothetical protein complement(1451709..1452149) Lactobacillus fermentum IFO 3956 6232133 YP_001844082.1 CDS LAF_1266 NC_010610.1 1452240 1453316 R Xaa-Pro aminopeptidase complement(1452240..1453316) Lactobacillus fermentum IFO 3956 6232134 YP_001844083.1 CDS rpmA NC_010610.1 1453402 1453683 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1453402..1453683) Lactobacillus fermentum IFO 3956 6232135 YP_001844084.1 CDS LAF_1268 NC_010610.1 1453707 1454030 R hypothetical protein complement(1453707..1454030) Lactobacillus fermentum IFO 3956 6232136 YP_001844085.1 CDS rplU NC_010610.1 1454043 1454351 R 50S ribosomal protein L21 complement(1454043..1454351) Lactobacillus fermentum IFO 3956 6232137 YP_001844086.1 CDS LAF_1270 NC_010610.1 1454515 1455156 R transcriptional regulator complement(1454515..1455156) Lactobacillus fermentum IFO 3956 6232138 YP_001844087.1 CDS LAF_1271 NC_010610.1 1455908 1456441 R hypothetical protein complement(1455908..1456441) Lactobacillus fermentum IFO 3956 6233555 YP_001844088.1 CDS LAF_1272 NC_010610.1 1456434 1457432 R hypothetical protein complement(1456434..1457432) Lactobacillus fermentum IFO 3956 6232140 YP_001844089.1 CDS LAF_1273 NC_010610.1 1457386 1458279 R hypothetical protein complement(1457386..1458279) Lactobacillus fermentum IFO 3956 6232141 YP_001844090.1 CDS LAF_1274 NC_010610.1 1458547 1458675 D hypothetical protein 1458547..1458675 Lactobacillus fermentum IFO 3956 6232142 YP_001844091.1 CDS LAF_1275 NC_010610.1 1458849 1460201 R glutamine synthase complement(1458849..1460201) Lactobacillus fermentum IFO 3956 6232143 YP_001844092.1 CDS miaA NC_010610.1 1460400 1461323 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1460400..1461323) Lactobacillus fermentum IFO 3956 6232144 YP_001844093.1 CDS LAF_1277 NC_010610.1 1461404 1461598 D hypothetical protein 1461404..1461598 Lactobacillus fermentum IFO 3956 6232145 YP_001844094.1 CDS LAF_1278 NC_010610.1 1461778 1462197 R hypothetical protein complement(1461778..1462197) Lactobacillus fermentum IFO 3956 6232146 YP_001844095.1 CDS LAF_1279 NC_010610.1 1462222 1463184 R glucose kinase complement(1462222..1463184) Lactobacillus fermentum IFO 3956 6232147 YP_001844096.1 CDS LAF_1280 NC_010610.1 1463202 1463438 R hypothetical protein complement(1463202..1463438) Lactobacillus fermentum IFO 3956 6232148 YP_001844097.1 CDS LAF_1281 NC_010610.1 1463435 1464100 R hypothetical protein complement(1463435..1464100) Lactobacillus fermentum IFO 3956 6232149 YP_001844098.1 CDS LAF_1282 NC_010610.1 1464103 1464657 R 5-formyltetrahydrofolate cyclo-ligase complement(1464103..1464657) Lactobacillus fermentum IFO 3956 6232150 YP_001844099.1 CDS rpmG NC_010610.1 1464881 1465030 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1464881..1465030) Lactobacillus fermentum IFO 3956 6232151 YP_001844100.1 CDS LAF_1284 NC_010610.1 1465173 1467257 R penicillin binding protein 2B complement(1465173..1467257) Lactobacillus fermentum IFO 3956 6232152 YP_001844101.1 CDS LAF_1285 NC_010610.1 1467460 1470087 D hypothetical protein 1467460..1470087 Lactobacillus fermentum IFO 3956 6232153 YP_001844102.1 CDS LAF_1286 NC_010610.1 1470139 1470615 R transcription elongation factor GreA complement(1470139..1470615) Lactobacillus fermentum IFO 3956 6232154 YP_001844103.1 CDS LAF_1287 NC_010610.1 1470688 1471338 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1470688..1471338) Lactobacillus fermentum IFO 3956 6232155 YP_001844104.1 CDS pheT NC_010610.1 1471471 1473909 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1471471..1473909) Lactobacillus fermentum IFO 3956 6232156 YP_001844105.1 CDS pheS NC_010610.1 1473915 1474961 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1473915..1474961) Lactobacillus fermentum IFO 3956 6232157 YP_001844106.1 CDS LAF_1290 NC_010610.1 1475252 1475599 R hypothetical protein complement(1475252..1475599) Lactobacillus fermentum IFO 3956 6232739 YP_001844107.1 CDS LAF_1291 NC_010610.1 1475604 1476110 R hypothetical protein complement(1475604..1476110) Lactobacillus fermentum IFO 3956 6232740 YP_001844108.1 CDS LAF_1292 NC_010610.1 1476224 1477003 R rRNA methylase complement(1476224..1477003) Lactobacillus fermentum IFO 3956 6232741 YP_001844109.1 CDS LAF_1293 NC_010610.1 1477069 1477347 D acylphosphatase 1477069..1477347 Lactobacillus fermentum IFO 3956 6232618 YP_001844110.1 CDS LAF_1294 NC_010610.1 1477414 1478325 D hypothetical protein 1477414..1478325 Lactobacillus fermentum IFO 3956 6232619 YP_001844111.1 CDS LAF_1295 NC_010610.1 1478441 1478851 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1478441..1478851 Lactobacillus fermentum IFO 3956 6232620 YP_001844112.1 CDS LAF_1296 NC_010610.1 1478972 1480324 D hypothetical protein 1478972..1480324 Lactobacillus fermentum IFO 3956 6232621 YP_001844113.1 CDS LAF_1297 NC_010610.1 1480489 1482003 R two-component sensor histidine kinase complement(1480489..1482003) Lactobacillus fermentum IFO 3956 6232622 YP_001844114.1 CDS LAF_1298 NC_010610.1 1482008 1482694 R two-component response regulator complement(1482008..1482694) Lactobacillus fermentum IFO 3956 6232623 YP_001844115.1 CDS rpmF NC_010610.1 1482851 1483027 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1482851..1483027) Lactobacillus fermentum IFO 3956 6232624 YP_001844116.1 CDS LAF_1300 NC_010610.1 1483079 1483630 R hypothetical protein complement(1483079..1483630) Lactobacillus fermentum IFO 3956 6232625 YP_001844117.1 CDS LAF_1301 NC_010610.1 1483716 1484843 R hypothetical protein complement(1483716..1484843) Lactobacillus fermentum IFO 3956 6232626 YP_001844118.1 CDS LAF_1302 NC_010610.1 1484840 1485592 R hypothetical protein complement(1484840..1485592) Lactobacillus fermentum IFO 3956 6232627 YP_001844119.1 CDS LAF_1303 NC_010610.1 1485589 1485948 R hypothetical protein complement(1485589..1485948) Lactobacillus fermentum IFO 3956 6232628 YP_001844120.1 CDS LAF_1304 NC_010610.1 1485949 1486560 R hypothetical protein complement(1485949..1486560) Lactobacillus fermentum IFO 3956 6232629 YP_001844121.1 CDS LAF_1305 NC_010610.1 1486553 1487065 R hypothetical protein complement(1486553..1487065) Lactobacillus fermentum IFO 3956 6232630 YP_001844122.1 CDS LAF_1306 NC_010610.1 1487201 1487512 R hypothetical protein complement(1487201..1487512) Lactobacillus fermentum IFO 3956 6232631 YP_001844123.1 CDS LAF_1307 NC_010610.1 1487531 1488655 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(1487531..1488655) Lactobacillus fermentum IFO 3956 6232632 YP_001844124.1 CDS LAF_1308 NC_010610.1 1488639 1489178 R hypothetical protein complement(1488639..1489178) Lactobacillus fermentum IFO 3956 6232633 YP_001844125.1 CDS rplT NC_010610.1 1490112 1490465 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1490112..1490465) Lactobacillus fermentum IFO 3956 6232634 YP_001844126.1 CDS rpmI NC_010610.1 1490515 1490712 R 50S ribosomal protein L35 complement(1490515..1490712) Lactobacillus fermentum IFO 3956 6232635 YP_001844127.1 CDS LAF_1311 NC_010610.1 1490735 1491244 R translation initiation factor IF-3 complement(1490735..1491244) Lactobacillus fermentum IFO 3956 6232636 YP_001844128.1 CDS LAF_1312 NC_010610.1 1491462 1492406 R primosomal protein DnaI complement(1491462..1492406) Lactobacillus fermentum IFO 3956 6232637 YP_001844129.1 CDS LAF_1313 NC_010610.1 1492439 1493803 R replication initiation and membrane attachment protein DnaB complement(1492439..1493803) Lactobacillus fermentum IFO 3956 6232638 YP_001844130.1 CDS nrdR NC_010610.1 1493800 1494258 R transcriptional regulator NrdR complement(1493800..1494258) Lactobacillus fermentum IFO 3956 6232639 YP_001844131.1 CDS LAF_1315 NC_010610.1 1494303 1494923 R dephospho-CoA kinase complement(1494303..1494923) Lactobacillus fermentum IFO 3956 6232640 YP_001844132.1 CDS LAF_1316 NC_010610.1 1494916 1495755 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1494916..1495755) Lactobacillus fermentum IFO 3956 6232641 YP_001844133.1 CDS LAF_1317 NC_010610.1 1495840 1498500 R DNA-directed DNA polymerase I complement(1495840..1498500) Lactobacillus fermentum IFO 3956 6232642 YP_001844134.1 CDS LAF_1318 NC_010610.1 1498642 1499391 D hypothetical protein 1498642..1499391 Lactobacillus fermentum IFO 3956 6232643 YP_001844135.1 CDS LAF_1319 NC_010610.1 1499429 1500139 R hypothetical protein complement(1499429..1500139) Lactobacillus fermentum IFO 3956 6232644 YP_001844136.1 CDS murC NC_010610.1 1500235 1501548 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(1500235..1501548) Lactobacillus fermentum IFO 3956 6232645 YP_001844137.1 CDS LAF_1321 NC_010610.1 1501577 1502209 R hypothetical protein complement(1501577..1502209) Lactobacillus fermentum IFO 3956 6232646 YP_001844138.1 CDS LAF_1322 NC_010610.1 1502333 1502650 R thioredoxin complement(1502333..1502650) Lactobacillus fermentum IFO 3956 6232647 YP_001844139.1 CDS LAF_1323 NC_010610.1 1502826 1503158 D hypothetical protein 1502826..1503158 Lactobacillus fermentum IFO 3956 6232648 YP_001844140.1 CDS trmB NC_010610.1 1503249 1503896 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1503249..1503896) Lactobacillus fermentum IFO 3956 6232649 YP_001844141.1 CDS LAF_1325 NC_010610.1 1503914 1505098 R ABC transporter permease complement(1503914..1505098) Lactobacillus fermentum IFO 3956 6232650 YP_001844142.1 CDS LAF_1326 NC_010610.1 1505091 1505816 R ABC transporter ATP-binding protein complement(1505091..1505816) Lactobacillus fermentum IFO 3956 6232651 YP_001844143.1 CDS LAF_1327 NC_010610.1 1505965 1506393 D histidine triad protein 1505965..1506393 Lactobacillus fermentum IFO 3956 6232652 YP_001844144.1 CDS LAF_1328 NC_010610.1 1506395 1506628 D hypothetical protein 1506395..1506628 Lactobacillus fermentum IFO 3956 6232653 YP_001844145.1 CDS LAF_1329 NC_010610.1 1506707 1507699 R peptidylprolyl isomerase complement(1506707..1507699) Lactobacillus fermentum IFO 3956 6232654 YP_001844146.1 CDS LAF_1330 NC_010610.1 1507791 1508747 R hypothetical protein complement(1507791..1508747) Lactobacillus fermentum IFO 3956 6232655 YP_001844147.1 CDS LAF_1331 NC_010610.1 1508899 1509261 R hypothetical protein complement(1508899..1509261) Lactobacillus fermentum IFO 3956 6232656 YP_001844148.1 CDS LAF_1332 NC_010610.1 1509320 1511395 R penicillin binding protein 2A complement(1509320..1511395) Lactobacillus fermentum IFO 3956 6232657 YP_001844149.1 CDS LAF_1333 NC_010610.1 1511934 1513622 R arginyl-tRNA synthase complement(1511934..1513622) Lactobacillus fermentum IFO 3956 6232658 YP_001844150.1 CDS LAF_1335 NC_010610.1 1514041 1514433 R hypothetical protein complement(1514041..1514433) Lactobacillus fermentum IFO 3956 6233556 YP_001844151.1 CDS LAF_1334 NC_010610.1 1514399 1514881 D hypothetical protein 1514399..1514881 Lactobacillus fermentum IFO 3956 6232661 YP_001844152.1 CDS LAF_1336 NC_010610.1 1514882 1515964 R dihydropteroate synthase complement(1514882..1515964) Lactobacillus fermentum IFO 3956 6232660 YP_001844153.1 CDS LAF_1337 NC_010610.1 1515999 1516589 R hypothetical protein complement(1515999..1516589) Lactobacillus fermentum IFO 3956 6232662 YP_001844154.1 CDS LAF_1338 NC_010610.1 1516570 1517850 R folylpolyglutamate synthase complement(1516570..1517850) Lactobacillus fermentum IFO 3956 6232663 YP_001844155.1 CDS folE NC_010610.1 1517847 1518419 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(1517847..1518419) Lactobacillus fermentum IFO 3956 6232664 YP_001844156.1 CDS LAF_1340 NC_010610.1 1518401 1518919 R 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1518401..1518919) Lactobacillus fermentum IFO 3956 6232665 YP_001844157.1 CDS LAF_1341 NC_010610.1 1518909 1519280 R dihydroneopterin aldolase complement(1518909..1519280) Lactobacillus fermentum IFO 3956 6232666 YP_001844158.1 CDS LAF_1342 NC_010610.1 1519496 1520179 R hypothetical protein complement(1519496..1520179) Lactobacillus fermentum IFO 3956 6232667 YP_001844159.1 CDS LAF_1343 NC_010610.1 1520198 1521205 R transcriptional regulator complement(1520198..1521205) Lactobacillus fermentum IFO 3956 6232668 YP_001844160.1 CDS LAF_1344 NC_010610.1 1521279 1521887 R hypothetical protein complement(1521279..1521887) Lactobacillus fermentum IFO 3956 6232669 YP_001844161.1 CDS LAF_1345 NC_010610.1 1522017 1522649 D deoxyguanosine kinase 1522017..1522649 Lactobacillus fermentum IFO 3956 6232670 YP_001844162.1 CDS LAF_1346 NC_010610.1 1522749 1523870 R hypothetical protein complement(1522749..1523870) Lactobacillus fermentum IFO 3956 6232671 YP_001844163.1 CDS LAF_1347 NC_010610.1 1523958 1525367 R hypothetical protein complement(1523958..1525367) Lactobacillus fermentum IFO 3956 6232672 YP_001844164.1 CDS LAF_1348 NC_010610.1 1525471 1525971 R hypothetical protein complement(1525471..1525971) Lactobacillus fermentum IFO 3956 6232673 YP_001844165.1 CDS LAF_1349 NC_010610.1 1526051 1527451 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(1526051..1527451) Lactobacillus fermentum IFO 3956 6232674 YP_001844166.1 CDS LAF_1350 NC_010610.1 1527559 1528434 D hypothetical protein 1527559..1528434 Lactobacillus fermentum IFO 3956 6232675 YP_001844167.1 CDS LAF_1351 NC_010610.1 1528428 1528805 D hypothetical protein 1528428..1528805 Lactobacillus fermentum IFO 3956 6232676 YP_001844168.1 CDS LAF_1352 NC_010610.1 1528850 1530496 R polysaccharide biosynthesis protein complement(1528850..1530496) Lactobacillus fermentum IFO 3956 6232677 YP_001844169.1 CDS LAF_1353 NC_010610.1 1530609 1530884 R hypothetical protein complement(1530609..1530884) Lactobacillus fermentum IFO 3956 6232678 YP_001844170.1 CDS leuS NC_010610.1 1531316 1533733 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1531316..1533733) Lactobacillus fermentum IFO 3956 6232679 YP_001844171.1 CDS LAF_1355 NC_010610.1 1534062 1534802 D hypothetical protein 1534062..1534802 Lactobacillus fermentum IFO 3956 6232680 YP_001844172.1 CDS proA NC_010610.1 1535061 1536302 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(1535061..1536302) Lactobacillus fermentum IFO 3956 6232681 YP_001844173.1 CDS LAF_1357 NC_010610.1 1536305 1537102 R glutamate 5-kinase complement(1536305..1537102) Lactobacillus fermentum IFO 3956 6232682 YP_001844174.1 CDS LAF_1358 NC_010610.1 1537379 1538566 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1537379..1538566) Lactobacillus fermentum IFO 3956 6232683 YP_001844175.1 CDS LAF_1359 NC_010610.1 1538760 1539491 D hypothetical protein 1538760..1539491 Lactobacillus fermentum IFO 3956 6232684 YP_001844176.1 CDS LAF_1360 NC_010610.1 1539585 1540121 R DNA-3-methyladenine glycosylase I complement(1539585..1540121) Lactobacillus fermentum IFO 3956 6232685 YP_001844177.1 CDS LAF_1361 NC_010610.1 1540160 1541593 R multidrug transport protein complement(1540160..1541593) Lactobacillus fermentum IFO 3956 6232686 YP_001844178.1 CDS LAF_1362 NC_010610.1 1541715 1542170 D ferric uptake regulator 1541715..1542170 Lactobacillus fermentum IFO 3956 6232687 YP_001844179.1 CDS LAF_1363 NC_010610.1 1542390 1543757 R amino acid transporter complement(1542390..1543757) Lactobacillus fermentum IFO 3956 6232688 YP_001844180.1 CDS LAF_1364 NC_010610.1 1543929 1544087 D hypothetical protein 1543929..1544087 Lactobacillus fermentum IFO 3956 6232689 YP_001844181.1 CDS LAF_1365 NC_010610.1 1544097 1544714 D hypothetical protein 1544097..1544714 Lactobacillus fermentum IFO 3956 6232690 YP_001844182.1 CDS LAF_1366 NC_010610.1 1544817 1545059 R hypothetical protein complement(1544817..1545059) Lactobacillus fermentum IFO 3956 6232691 YP_001844183.1 CDS LAF_1367 NC_010610.1 1545082 1545333 R hypothetical protein complement(1545082..1545333) Lactobacillus fermentum IFO 3956 6232692 YP_001844184.1 CDS LAF_1368 NC_010610.1 1545597 1546283 D hypothetical protein 1545597..1546283 Lactobacillus fermentum IFO 3956 6232693 YP_001844185.1 CDS LAF_1369 NC_010610.1 1546438 1546869 R small heat shock protein complement(1546438..1546869) Lactobacillus fermentum IFO 3956 6232694 YP_001844186.1 CDS LAF_1370 NC_010610.1 1547081 1547584 R acyl-CoA hydrolase complement(1547081..1547584) Lactobacillus fermentum IFO 3956 6232695 YP_001844187.1 CDS LAF_1371 NC_010610.1 1547738 1548553 R extracellular protein complement(1547738..1548553) Lactobacillus fermentum IFO 3956 6232696 YP_001844188.1 CDS LAF_1372 NC_010610.1 1548962 1550032 R alcohol dehydrogenase complement(1548962..1550032) Lactobacillus fermentum IFO 3956 6232697 YP_001844189.1 CDS LAF_1373 NC_010610.1 1550241 1551578 R uracil-xanthine transport protein complement(1550241..1551578) Lactobacillus fermentum IFO 3956 6232742 YP_001844190.1 CDS LAF_1374 NC_010610.1 1551729 1552601 R hypothetical protein complement(1551729..1552601) Lactobacillus fermentum IFO 3956 6232743 YP_001844191.1 CDS LAF_1375 NC_010610.1 1552610 1553191 R anaerobic ribonucleotide reductase activator protein complement(1552610..1553191) Lactobacillus fermentum IFO 3956 6232494 YP_001844192.1 CDS LAF_1376 NC_010610.1 1553136 1555346 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1553136..1555346) Lactobacillus fermentum IFO 3956 6232495 YP_001844193.1 CDS LAF_1377 NC_010610.1 1555719 1556408 R glutamate ABC transporter permease complement(1555719..1556408) Lactobacillus fermentum IFO 3956 6232496 YP_001844194.1 CDS LAF_1378 NC_010610.1 1556425 1557246 R glutamate ABC transporter substrate-binding protein complement(1556425..1557246) Lactobacillus fermentum IFO 3956 6232497 YP_001844195.1 CDS LAF_1379 NC_010610.1 1557979 1558128 D hypothetical protein 1557979..1558128 Lactobacillus fermentum IFO 3956 6232498 YP_001844196.1 CDS LAF_1380 NC_010610.1 1558331 1558711 D hypothetical protein 1558331..1558711 Lactobacillus fermentum IFO 3956 6232499 YP_001844197.1 CDS LAF_1381 NC_010610.1 1565169 1565417 R hypothetical protein complement(1565169..1565417) Lactobacillus fermentum IFO 3956 6233026 YP_001844198.1 CDS LAF_1382 NC_010610.1 1565751 1566770 R hypothetical protein complement(1565751..1566770) Lactobacillus fermentum IFO 3956 6232501 YP_001844199.1 CDS LAF_1383 NC_010610.1 1566772 1567797 R glycosyltransferase complement(1566772..1567797) Lactobacillus fermentum IFO 3956 6232502 YP_001844200.1 CDS LAF_1384 NC_010610.1 1567790 1569007 R glycosyltransferase complement(1567790..1569007) Lactobacillus fermentum IFO 3956 6232503 YP_001844201.1 CDS LAF_1385 NC_010610.1 1569223 1570953 R PTS enzyme I complement(1569223..1570953) Lactobacillus fermentum IFO 3956 6232504 YP_001844202.1 CDS LAF_1386 NC_010610.1 1570955 1571221 R phosphocarrier protein HPr complement(1570955..1571221) Lactobacillus fermentum IFO 3956 6232505 YP_001844203.1 CDS LAF_1387 NC_010610.1 1571351 1571593 R hypothetical protein complement(1571351..1571593) Lactobacillus fermentum IFO 3956 6232506 YP_001844204.1 CDS LAF_1388 NC_010610.1 1571767 1574013 D ATP-dependent Clp protease ATP-binding subunit 1571767..1574013 Lactobacillus fermentum IFO 3956 6232507 YP_001844205.1 CDS LAF_1389 NC_010610.1 1574266 1574973 D hypothetical protein 1574266..1574973 Lactobacillus fermentum IFO 3956 6232508 YP_001844206.1 CDS LAF_1390 NC_010610.1 1575100 1575675 D pyrazinamidase/nicotinamidase 1575100..1575675 Lactobacillus fermentum IFO 3956 6232509 YP_001844207.1 CDS LAF_1391 NC_010610.1 1575668 1577095 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1575668..1577095 Lactobacillus fermentum IFO 3956 6232510 YP_001844208.1 CDS LAF_1392 NC_010610.1 1577260 1577853 R hypothetical protein complement(1577260..1577853) Lactobacillus fermentum IFO 3956 6232511 YP_001844209.1 CDS LAF_1393 NC_010610.1 1578009 1578728 D hypothetical protein 1578009..1578728 Lactobacillus fermentum IFO 3956 6232512 YP_001844210.1 CDS LAF_1394 NC_010610.1 1578739 1579527 D pyrroline-5-carboxylate reductase 1578739..1579527 Lactobacillus fermentum IFO 3956 6232513 YP_001844211.1 CDS LAF_1395 NC_010610.1 1579484 1580401 D hypothetical protein 1579484..1580401 Lactobacillus fermentum IFO 3956 6232514 YP_001844212.1 CDS LAF_1396 NC_010610.1 1580483 1581724 D hypothetical protein 1580483..1581724 Lactobacillus fermentum IFO 3956 6232515 YP_001844213.1 CDS LAF_1397 NC_010610.1 1582033 1582176 R hypothetical protein complement(1582033..1582176) Lactobacillus fermentum IFO 3956 6232516 YP_001844214.1 CDS LAF_1398 NC_010610.1 1582367 1583065 R hypothetical protein complement(1582367..1583065) Lactobacillus fermentum IFO 3956 6232517 YP_001844215.1 CDS LAF_1399 NC_010610.1 1583078 1583938 R ABC transporter ATP-binding protein complement(1583078..1583938) Lactobacillus fermentum IFO 3956 6232518 YP_001844216.1 CDS LAF_1400 NC_010610.1 1583925 1584302 R transcriptional regulator complement(1583925..1584302) Lactobacillus fermentum IFO 3956 6232519 YP_001844217.1 CDS LAF_1401 NC_010610.1 1584412 1585344 R dTDP-glucose 4,6-dehydratase complement(1584412..1585344) Lactobacillus fermentum IFO 3956 6232520 YP_001844218.1 CDS LAF_1402 NC_010610.1 1585438 1586391 R glycosyltransferase complement(1585438..1586391) Lactobacillus fermentum IFO 3956 6232521 YP_001844219.1 CDS LAF_1403 NC_010610.1 1586602 1588278 R hypothetical protein complement(1586602..1588278) Lactobacillus fermentum IFO 3956 6232522 YP_001844220.1 CDS prfC NC_010610.1 1588336 1589916 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(1588336..1589916) Lactobacillus fermentum IFO 3956 6232523 YP_001844221.1 CDS LAF_1405 NC_010610.1 1590017 1590964 R glycosyltransferase complement(1590017..1590964) Lactobacillus fermentum IFO 3956 6232524 YP_001844222.1 CDS LAF_1406 NC_010610.1 1590974 1592752 R hypothetical protein complement(1590974..1592752) Lactobacillus fermentum IFO 3956 6232525 YP_001844223.1 CDS LAF_1407 NC_010610.1 1592823 1593803 R glycosyltransferase complement(1592823..1593803) Lactobacillus fermentum IFO 3956 6232526 YP_001844224.1 CDS LAF_1408 NC_010610.1 1593975 1595084 R hypothetical protein complement(1593975..1595084) Lactobacillus fermentum IFO 3956 6232527 YP_001844225.1 CDS LAF_1409 NC_010610.1 1595084 1596016 R glycosyltransferase complement(1595084..1596016) Lactobacillus fermentum IFO 3956 6232528 YP_001844226.1 CDS LAF_1410 NC_010610.1 1596811 1598223 R hypothetical protein complement(1596811..1598223) Lactobacillus fermentum IFO 3956 6232529 YP_001844227.1 CDS LAF_1411 NC_010610.1 1600832 1601134 D hypothetical protein 1600832..1601134 Lactobacillus fermentum IFO 3956 6232530 YP_001844228.1 CDS LAF_1412 NC_010610.1 1601158 1601994 D transposase 1601158..1601994 Lactobacillus fermentum IFO 3956 6232531 YP_001844229.1 CDS LAF_1413 NC_010610.1 1602480 1603571 R O-acetyltransferase complement(1602480..1603571) Lactobacillus fermentum IFO 3956 6232532 YP_001844230.1 CDS LAF_1414 NC_010610.1 1603594 1604598 R glycosyltransferase complement(1603594..1604598) Lactobacillus fermentum IFO 3956 6232533 YP_001844231.1 CDS LAF_1415 NC_010610.1 1604607 1606037 R hypothetical protein complement(1604607..1606037) Lactobacillus fermentum IFO 3956 6232534 YP_001844232.1 CDS LAF_1416 NC_010610.1 1606040 1607161 R UDP-galactopyranose mutase complement(1606040..1607161) Lactobacillus fermentum IFO 3956 6232535 YP_001844233.1 CDS LAF_1417 NC_010610.1 1607300 1608361 D UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 1607300..1608361 Lactobacillus fermentum IFO 3956 6232536 YP_001844234.1 CDS LAF_1418 NC_010610.1 1609566 1610582 R transposase complement(1609566..1610582) Lactobacillus fermentum IFO 3956 6232537 YP_001844235.1 CDS LAF_1419 NC_010610.1 1612346 1613566 R transposase complement(1612346..1613566) Lactobacillus fermentum IFO 3956 6232538 YP_001844236.1 CDS LAF_1420 NC_010610.1 1613643 1614521 R transposase complement(1613643..1614521) Lactobacillus fermentum IFO 3956 6232539 YP_001844237.1 CDS LAF_1421 NC_010610.1 1614545 1614847 R hypothetical protein complement(1614545..1614847) Lactobacillus fermentum IFO 3956 6232540 YP_001844238.1 CDS LAF_1422 NC_010610.1 1616166 1616915 D hypothetical protein 1616166..1616915 Lactobacillus fermentum IFO 3956 6232541 YP_001844239.1 CDS LAF_1423 NC_010610.1 1616899 1618173 R hypothetical protein complement(1616899..1618173) Lactobacillus fermentum IFO 3956 6232542 YP_001844240.1 CDS LAF_1424 NC_010610.1 1618133 1618894 R glycosyltransferase complement(1618133..1618894) Lactobacillus fermentum IFO 3956 6232543 YP_001844241.1 CDS LAF_1425 NC_010610.1 1618906 1619580 R glycosyltransferase complement(1618906..1619580) Lactobacillus fermentum IFO 3956 6232544 YP_001844242.1 CDS recX NC_010610.1 1619729 1620547 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1619729..1620547) Lactobacillus fermentum IFO 3956 6232545 YP_001844243.1 CDS LAF_1427 NC_010610.1 1620641 1620847 D hypothetical protein 1620641..1620847 Lactobacillus fermentum IFO 3956 6232546 YP_001844244.1 CDS LAF_1428 NC_010610.1 1620883 1621098 D hypothetical protein 1620883..1621098 Lactobacillus fermentum IFO 3956 6232547 YP_001844245.1 CDS LAF_1429 NC_010610.1 1621279 1622205 R hypothetical protein complement(1621279..1622205) Lactobacillus fermentum IFO 3956 6232548 YP_001844246.1 CDS LAF_1430 NC_010610.1 1622304 1625243 R hypothetical protein complement(1622304..1625243) Lactobacillus fermentum IFO 3956 6232549 YP_001844247.1 CDS LAF_1431 NC_010610.1 1625400 1626257 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1625400..1626257) Lactobacillus fermentum IFO 3956 6232550 YP_001844248.1 CDS LAF_1432 NC_010610.1 1626370 1626816 D flavodoxin 1626370..1626816 Lactobacillus fermentum IFO 3956 6232551 YP_001844249.1 CDS LAF_1433 NC_010610.1 1626826 1627260 D teichoic acid glycosylation protein 1626826..1627260 Lactobacillus fermentum IFO 3956 6232552 YP_001844250.1 CDS LAF_1434 NC_010610.1 1627916 1629244 R ATP-dependent RNA helicase complement(1627916..1629244) Lactobacillus fermentum IFO 3956 6233567 YP_001844251.1 CDS LAF_1435 NC_010610.1 1629248 1630258 R oxidoreductase complement(1629248..1630258) Lactobacillus fermentum IFO 3956 6232554 YP_001844252.1 CDS LAF_1436 NC_010610.1 1630423 1630788 D hypothetical protein 1630423..1630788 Lactobacillus fermentum IFO 3956 6232555 YP_001844253.1 CDS LAF_1437 NC_010610.1 1630930 1631499 D hypothetical protein 1630930..1631499 Lactobacillus fermentum IFO 3956 6232556 YP_001844254.1 CDS LAF_1438 NC_010610.1 1631500 1632402 R L-2-hydroxyisocaproate dehydrogenase complement(1631500..1632402) Lactobacillus fermentum IFO 3956 6232557 YP_001844255.1 CDS LAF_1439 NC_010610.1 1632570 1634081 R glutamate-cysteine ligase complement(1632570..1634081) Lactobacillus fermentum IFO 3956 6232558 YP_001844256.1 CDS LAF_1440 NC_010610.1 1634190 1634969 R hypothetical protein complement(1634190..1634969) Lactobacillus fermentum IFO 3956 6232559 YP_001844257.1 CDS LAF_1441 NC_010610.1 1636008 1637639 R ABC transporter ATP-binding protein complement(1636008..1637639) Lactobacillus fermentum IFO 3956 6232560 YP_001844258.1 CDS LAF_1442 NC_010610.1 1637804 1638271 R hypothetical protein complement(1637804..1638271) Lactobacillus fermentum IFO 3956 6232561 YP_001844259.1 CDS LAF_1443 NC_010610.1 1638352 1638915 R hypothetical protein complement(1638352..1638915) Lactobacillus fermentum IFO 3956 6232562 YP_001844260.1 CDS LAF_1444 NC_010610.1 1639385 1640644 R transcriptional regulator complement(1639385..1640644) Lactobacillus fermentum IFO 3956 6232563 YP_001844261.1 CDS LAF_1445 NC_010610.1 1640867 1641415 R hypothetical protein complement(1640867..1641415) Lactobacillus fermentum IFO 3956 6232564 YP_001844262.1 CDS LAF_1446 NC_010610.1 1642818 1643336 D methylated DNA-protein cysteine methyltransferase 1642818..1643336 Lactobacillus fermentum IFO 3956 6232565 YP_001844263.1 CDS LAF_1447 NC_010610.1 1643427 1644020 D hypothetical protein 1643427..1644020 Lactobacillus fermentum IFO 3956 6232566 YP_001844264.1 CDS LAF_1448 NC_010610.1 1644038 1644259 D hypothetical protein 1644038..1644259 Lactobacillus fermentum IFO 3956 6232567 YP_001844265.1 CDS LAF_1449 NC_010610.1 1644297 1644986 R hypothetical protein complement(1644297..1644986) Lactobacillus fermentum IFO 3956 6232568 YP_001844266.1 CDS LAF_1450 NC_010610.1 1645149 1645721 R dinucleotide-binding enzyme complement(1645149..1645721) Lactobacillus fermentum IFO 3956 6232569 YP_001844267.1 CDS LAF_1451 NC_010610.1 1645724 1646050 R hypothetical protein complement(1645724..1646050) Lactobacillus fermentum IFO 3956 6232570 YP_001844268.1 CDS LAF_1452 NC_010610.1 1646309 1647871 R cell division protein complement(1646309..1647871) Lactobacillus fermentum IFO 3956 6232571 YP_001844269.1 CDS LAF_1453 NC_010610.1 1647911 1648417 R hypothetical protein complement(1647911..1648417) Lactobacillus fermentum IFO 3956 6232572 YP_001844270.1 CDS LAF_1454 NC_010610.1 1648463 1648780 D hypothetical protein 1648463..1648780 Lactobacillus fermentum IFO 3956 6232573 YP_001844271.1 CDS LAF_1455 NC_010610.1 1648815 1649237 D hypothetical protein 1648815..1649237 Lactobacillus fermentum IFO 3956 6233492 YP_001844272.1 CDS LAF_1456 NC_010610.1 1649804 1651021 D Na-H antiporter 1649804..1651021 Lactobacillus fermentum IFO 3956 6231942 YP_001844273.1 CDS LAF_1457 NC_010610.1 1651474 1652568 D hypothetical protein 1651474..1652568 Lactobacillus fermentum IFO 3956 6231943 YP_001844274.1 CDS LAF_1458 NC_010610.1 1653814 1654659 D transposase 1653814..1654659 Lactobacillus fermentum IFO 3956 6231944 YP_001844275.1 CDS LAF_1459 NC_010610.1 1655365 1656585 R transposase complement(1655365..1656585) Lactobacillus fermentum IFO 3956 6231945 YP_001844276.1 CDS LAF_1460 NC_010610.1 1659075 1660445 R NADH peroxidase complement(1659075..1660445) Lactobacillus fermentum IFO 3956 6231946 YP_001844277.1 CDS LAF_1461 NC_010610.1 1660512 1661732 R transposase complement(1660512..1661732) Lactobacillus fermentum IFO 3956 6231947 YP_001844278.1 CDS LAF_1462 NC_010610.1 1662512 1662814 D hypothetical protein 1662512..1662814 Lactobacillus fermentum IFO 3956 6231948 YP_001844279.1 CDS LAF_1463 NC_010610.1 1662838 1663716 D transposase 1662838..1663716 Lactobacillus fermentum IFO 3956 6231949 YP_001844280.1 CDS LAF_1464 NC_010610.1 1664469 1665119 R transcriptional regulator complement(1664469..1665119) Lactobacillus fermentum IFO 3956 6231950 YP_001844281.1 CDS LAF_1465 NC_010610.1 1665144 1665425 R hypothetical protein complement(1665144..1665425) Lactobacillus fermentum IFO 3956 6231951 YP_001844282.1 CDS LAF_1466 NC_010610.1 1665477 1665704 R hypothetical protein complement(1665477..1665704) Lactobacillus fermentum IFO 3956 6231952 YP_001844283.1 CDS LAF_1467 NC_010610.1 1668616 1669755 D transposase 1668616..1669755 Lactobacillus fermentum IFO 3956 6231953 YP_001844284.1 CDS LAF_1468 NC_010610.1 1671472 1672659 R transposase complement(1671472..1672659) Lactobacillus fermentum IFO 3956 6231954 YP_001844285.1 CDS LAF_1469 NC_010610.1 1672803 1674179 R RNA methyltransferase complement(1672803..1674179) Lactobacillus fermentum IFO 3956 6231955 YP_001844286.1 CDS LAF_1470 NC_010610.1 1674294 1675301 R similar to YegS from E. coli; lipid kinase complement(1674294..1675301) Lactobacillus fermentum IFO 3956 6231956 YP_001844287.1 CDS gatB NC_010610.1 1675314 1676738 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1675314..1676738) Lactobacillus fermentum IFO 3956 6231957 YP_001844288.1 CDS gatA NC_010610.1 1676753 1678216 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1676753..1678216) Lactobacillus fermentum IFO 3956 6231958 YP_001844289.1 CDS gatC NC_010610.1 1678216 1678536 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(1678216..1678536) Lactobacillus fermentum IFO 3956 6231959 YP_001844290.1 CDS LAF_1474 NC_010610.1 1678711 1679823 R lipoprotein complement(1678711..1679823) Lactobacillus fermentum IFO 3956 6231960 YP_001844291.1 CDS LAF_1475 NC_010610.1 1679826 1681865 R NAD-dependent DNA ligase complement(1679826..1681865) Lactobacillus fermentum IFO 3956 6231961 YP_001844292.1 CDS LAF_1476 NC_010610.1 1681867 1684137 R ATP-dependent DNA helicase complement(1681867..1684137) Lactobacillus fermentum IFO 3956 6231962 YP_001844293.1 CDS LAF_1477 NC_010610.1 1684315 1685487 R phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1684315..1685487) Lactobacillus fermentum IFO 3956 6231963 YP_001844294.1 CDS LAF_1478 NC_010610.1 1685489 1686076 R xanthine phosphoribosyltransferase complement(1685489..1686076) Lactobacillus fermentum IFO 3956 6231964 YP_001844295.1 CDS LAF_1479 NC_010610.1 1686092 1686706 R N-acetylmuramidase complement(1686092..1686706) Lactobacillus fermentum IFO 3956 6231965 YP_001844296.1 CDS LAF_1480 NC_010610.1 1687101 1687874 R acetoin reductase complement(1687101..1687874) Lactobacillus fermentum IFO 3956 6231966 YP_001844297.1 CDS LAF_1481 NC_010610.1 1688168 1689271 D hypothetical protein 1688168..1689271 Lactobacillus fermentum IFO 3956 6231967 YP_001844298.1 CDS LAF_1482 NC_010610.1 1689322 1689717 R 30S ribosomal protein S9 complement(1689322..1689717) Lactobacillus fermentum IFO 3956 6231968 YP_001844299.1 CDS rplM NC_010610.1 1689731 1690174 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1689731..1690174) Lactobacillus fermentum IFO 3956 6231969 YP_001844300.1 CDS truA NC_010610.1 1690281 1691057 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1690281..1691057) Lactobacillus fermentum IFO 3956 6231970 YP_001844301.1 CDS LAF_1485 NC_010610.1 1691073 1691876 R ABC transporter permease complement(1691073..1691876) Lactobacillus fermentum IFO 3956 6231971 YP_001844302.1 CDS LAF_1486 NC_010610.1 1691869 1692741 R ABC transporter ATP-binding protein complement(1691869..1692741) Lactobacillus fermentum IFO 3956 6231972 YP_001844303.1 CDS LAF_1487 NC_010610.1 1692708 1693544 R ABC transporter ATP-binding protein complement(1692708..1693544) Lactobacillus fermentum IFO 3956 6231973 YP_001844304.1 CDS rplQ NC_010610.1 1693735 1694115 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1693735..1694115) Lactobacillus fermentum IFO 3956 6231974 YP_001844305.1 CDS LAF_1489 NC_010610.1 1694148 1695092 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the subunit alpha is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1694148..1695092) Lactobacillus fermentum IFO 3956 6231975 YP_001844306.1 CDS LAF_1490 NC_010610.1 1695175 1695564 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1695175..1695564) Lactobacillus fermentum IFO 3956 6231976 YP_001844307.1 CDS rpsM NC_010610.1 1695596 1695961 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1695596..1695961) Lactobacillus fermentum IFO 3956 6231977 YP_001844308.1 CDS LAF_1492 NC_010610.1 1695987 1696103 R 50S ribosomal protein L36 complement(1695987..1696103) Lactobacillus fermentum IFO 3956 6231978 YP_001844309.1 CDS infA NC_010610.1 1696141 1696359 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1696141..1696359) Lactobacillus fermentum IFO 3956 6231979 YP_001844310.1 CDS adk NC_010610.1 1696501 1697151 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1696501..1697151) Lactobacillus fermentum IFO 3956 6231980 YP_001844311.1 CDS LAF_1495 NC_010610.1 1697182 1698480 R preprotein translocase SecY subunit complement(1697182..1698480) Lactobacillus fermentum IFO 3956 6231981 YP_001844312.1 CDS rplO NC_010610.1 1698481 1698915 R late assembly protein; 50S ribosomal protein L15 complement(1698481..1698915) Lactobacillus fermentum IFO 3956 6231982 YP_001844313.1 CDS rpmD NC_010610.1 1698947 1699129 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1698947..1699129) Lactobacillus fermentum IFO 3956 6231983 YP_001844314.1 CDS rpsE NC_010610.1 1699143 1699652 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1699143..1699652) Lactobacillus fermentum IFO 3956 6231984 YP_001844315.1 CDS rplR NC_010610.1 1699675 1700040 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1699675..1700040) Lactobacillus fermentum IFO 3956 6231985 YP_001844316.1 CDS rplF NC_010610.1 1700085 1700621 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1700085..1700621) Lactobacillus fermentum IFO 3956 6231986 YP_001844317.1 CDS rpsH NC_010610.1 1700650 1701048 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1700650..1701048) Lactobacillus fermentum IFO 3956 6231987 YP_001844318.1 CDS rpsN NC_010610.1 1701081 1701266 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1701081..1701266) Lactobacillus fermentum IFO 3956 6231988 YP_001844319.1 CDS rplE NC_010610.1 1701283 1701825 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1701283..1701825) Lactobacillus fermentum IFO 3956 6231989 YP_001844320.1 CDS rplX NC_010610.1 1701855 1702163 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1701855..1702163) Lactobacillus fermentum IFO 3956 6231990 YP_001844321.1 CDS rplN NC_010610.1 1702197 1702565 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1702197..1702565) Lactobacillus fermentum IFO 3956 6231991 YP_001844322.1 CDS LAF_1506 NC_010610.1 1702626 1702892 R 30S ribosomal protein S17 complement(1702626..1702892) Lactobacillus fermentum IFO 3956 6231992 YP_001844323.1 CDS LAF_1507 NC_010610.1 1702915 1703121 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1702915..1703121) Lactobacillus fermentum IFO 3956 6231993 YP_001844324.1 CDS rplP NC_010610.1 1703111 1703545 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1703111..1703545) Lactobacillus fermentum IFO 3956 6231994 YP_001844325.1 CDS rpsC NC_010610.1 1703549 1704208 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1703549..1704208) Lactobacillus fermentum IFO 3956 6231995 YP_001844326.1 CDS rplV NC_010610.1 1704221 1704568 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1704221..1704568) Lactobacillus fermentum IFO 3956 6231996 YP_001844327.1 CDS rpsS NC_010610.1 1704585 1704866 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1704585..1704866) Lactobacillus fermentum IFO 3956 6231997 YP_001844328.1 CDS rplB NC_010610.1 1704907 1705752 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1704907..1705752) Lactobacillus fermentum IFO 3956 6231998 YP_001844329.1 CDS rplW NC_010610.1 1705778 1706071 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1705778..1706071) Lactobacillus fermentum IFO 3956 6231999 YP_001844330.1 CDS rplD NC_010610.1 1706071 1706694 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1706071..1706694) Lactobacillus fermentum IFO 3956 6232000 YP_001844331.1 CDS rplC NC_010610.1 1706713 1707375 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1706713..1707375) Lactobacillus fermentum IFO 3956 6232001 YP_001844332.1 CDS LAF_1516 NC_010610.1 1707425 1707733 R 30S ribosomal protein S10 complement(1707425..1707733) Lactobacillus fermentum IFO 3956 6232002 YP_001844333.1 CDS LAF_1517 NC_010610.1 1708122 1710206 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1708122..1710206) Lactobacillus fermentum IFO 3956 6232003 YP_001844334.1 CDS LAF_1518 NC_010610.1 1710329 1710799 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1710329..1710799) Lactobacillus fermentum IFO 3956 6232004 YP_001844335.1 CDS rpsL NC_010610.1 1710824 1711237 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1710824..1711237) Lactobacillus fermentum IFO 3956 6232005 YP_001844336.1 CDS LAF_1520 NC_010610.1 1712343 1713518 R hypothetical protein complement(1712343..1713518) Lactobacillus fermentum IFO 3956 6232006 YP_001844337.1 CDS LAF_1521 NC_010610.1 1713673 1714401 D glutamine amidotransferase 1713673..1714401 Lactobacillus fermentum IFO 3956 6232007 YP_001844338.1 CDS LAF_1522 NC_010610.1 1714469 1718116 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1714469..1718116) Lactobacillus fermentum IFO 3956 6232008 YP_001844339.1 CDS rpoB NC_010610.1 1718154 1721735 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1718154..1721735) Lactobacillus fermentum IFO 3956 6232009 YP_001844340.1 CDS LAF_1525 NC_010610.1 1721951 1722544 R transcriptional regulator complement(1721951..1722544) Lactobacillus fermentum IFO 3956 6232010 YP_001844341.1 CDS LAF_1524 NC_010610.1 1722435 1722602 D hypothetical protein 1722435..1722602 Lactobacillus fermentum IFO 3956 6232012 YP_001844342.1 CDS LAF_1526 NC_010610.1 1722730 1725234 R ATP-dependent Clp protease ATP-binding subunit complement(1722730..1725234) Lactobacillus fermentum IFO 3956 6232011 YP_001844343.1 CDS LAF_1527 NC_010610.1 1725253 1725723 R transcriptional regulator complement(1725253..1725723) Lactobacillus fermentum IFO 3956 6232013 YP_001844344.1 CDS LAF_1528 NC_010610.1 1725863 1726882 R similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs; alcohol dehydrogenase complement(1725863..1726882) Lactobacillus fermentum IFO 3956 6232014 YP_001844345.1 CDS LAF_1529 NC_010610.1 1727120 1728136 D transposase 1727120..1728136 Lactobacillus fermentum IFO 3956 6232015 YP_001844346.1 CDS LAF_1530 NC_010610.1 1728357 1729073 D hypothetical protein 1728357..1729073 Lactobacillus fermentum IFO 3956 6232016 YP_001844347.1 CDS LAF_1531 NC_010610.1 1729135 1729809 R hypothetical protein complement(1729135..1729809) Lactobacillus fermentum IFO 3956 6232017 YP_001844348.1 CDS LAF_1532 NC_010610.1 1730559 1731014 R hypothetical protein complement(1730559..1731014) Lactobacillus fermentum IFO 3956 6232018 YP_001844349.1 CDS LAF_1533 NC_010610.1 1731083 1731418 R hypothetical protein complement(1731083..1731418) Lactobacillus fermentum IFO 3956 6232019 YP_001844350.1 CDS LAF_1534 NC_010610.1 1731908 1732738 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1731908..1732738 Lactobacillus fermentum IFO 3956 6232020 YP_001844351.1 CDS LAF_1535 NC_010610.1 1734312 1734953 R deoxyguanosine kinase complement(1734312..1734953) Lactobacillus fermentum IFO 3956 6233572 YP_001844352.1 CDS LAF_1536 NC_010610.1 1735084 1736574 R lysine transport protein complement(1735084..1736574) Lactobacillus fermentum IFO 3956 6232022 YP_001844353.1 CDS LAF_1537 NC_010610.1 1736884 1737351 R hypothetical protein complement(1736884..1737351) Lactobacillus fermentum IFO 3956 6232023 YP_001844354.1 CDS LAF_1538 NC_010610.1 1737396 1738205 D esterase 1737396..1738205 Lactobacillus fermentum IFO 3956 6231780 YP_001844355.1 CDS LAF_1539 NC_010610.1 1738424 1739092 R phosphatase complement(1738424..1739092) Lactobacillus fermentum IFO 3956 6233189 YP_001844356.1 CDS LAF_1540 NC_010610.1 1739147 1739641 R hypothetical protein complement(1739147..1739641) Lactobacillus fermentum IFO 3956 6233190 YP_001844357.1 CDS LAF_1541 NC_010610.1 1739645 1740394 R hypothetical protein complement(1739645..1740394) Lactobacillus fermentum IFO 3956 6233191 YP_001844358.1 CDS LAF_1542 NC_010610.1 1740566 1740766 R cold shock protein complement(1740566..1740766) Lactobacillus fermentum IFO 3956 6233192 YP_001844359.1 CDS LAF_1543 NC_010610.1 1740915 1741574 R metal-dependent regulator complement(1740915..1741574) Lactobacillus fermentum IFO 3956 6233193 YP_001844360.1 CDS LAF_1544 NC_010610.1 1741727 1742632 D cation efflux system protein 1741727..1742632 Lactobacillus fermentum IFO 3956 6233194 YP_001844361.1 CDS LAF_1545 NC_010610.1 1742787 1743482 R hypothetical protein complement(1742787..1743482) Lactobacillus fermentum IFO 3956 6233195 YP_001844362.1 CDS LAF_1546 NC_010610.1 1743500 1744183 R hypothetical protein complement(1743500..1744183) Lactobacillus fermentum IFO 3956 6233196 YP_001844363.1 CDS LAF_1547 NC_010610.1 1744332 1744808 R hypothetical protein complement(1744332..1744808) Lactobacillus fermentum IFO 3956 6233197 YP_001844364.1 CDS LAF_1548 NC_010610.1 1745485 1746762 R hypothetical protein complement(1745485..1746762) Lactobacillus fermentum IFO 3956 6233198 YP_001844365.1 CDS LAF_1549 NC_010610.1 1746870 1748702 R hypothetical protein complement(1746870..1748702) Lactobacillus fermentum IFO 3956 6233199 YP_001844366.1 CDS LAF_1550 NC_010610.1 1748974 1749339 R hypothetical protein complement(1748974..1749339) Lactobacillus fermentum IFO 3956 6233200 YP_001844367.1 CDS LAF_1551 NC_010610.1 1749410 1749937 R transcriptional regulator complement(1749410..1749937) Lactobacillus fermentum IFO 3956 6233201 YP_001844368.1 CDS LAF_1552 NC_010610.1 1749995 1751479 D multidrug transport protein 1749995..1751479 Lactobacillus fermentum IFO 3956 6233202 YP_001844369.1 CDS LAF_1553 NC_010610.1 1751483 1752187 D hypothetical protein 1751483..1752187 Lactobacillus fermentum IFO 3956 6233203 YP_001844370.1 CDS LAF_1554 NC_010610.1 1752278 1753702 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(1752278..1753702) Lactobacillus fermentum IFO 3956 6233204 YP_001844371.1 CDS LAF_1555 NC_010610.1 1753834 1755201 R sugar transport protein complement(1753834..1755201) Lactobacillus fermentum IFO 3956 6233205 YP_001844372.1 CDS LAF_1556 NC_010610.1 1755418 1756503 R transcriptional repressor complement(1755418..1756503) Lactobacillus fermentum IFO 3956 6233206 YP_001844373.1 CDS araD NC_010610.1 1756662 1757390 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(1756662..1757390) Lactobacillus fermentum IFO 3956 6233207 YP_001844374.1 CDS LAF_1558 NC_010610.1 1757401 1759005 R sugar kinase complement(1757401..1759005) Lactobacillus fermentum IFO 3956 6233208 YP_001844375.1 CDS LAF_1559 NC_010610.1 1759236 1760120 R pseudouridylate synthase complement(1759236..1760120) Lactobacillus fermentum IFO 3956 6233209 YP_001844376.1 CDS LAF_1560 NC_010610.1 1760394 1762982 D hypothetical protein 1760394..1762982 Lactobacillus fermentum IFO 3956 6233573 YP_001844377.1 CDS LAF_1561 NC_010610.1 1763257 1763841 R 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate biosynthesis protein complement(1763257..1763841) Lactobacillus fermentum IFO 3956 6233211 YP_001844378.1 CDS LAF_1562 NC_010610.1 1763857 1764855 R hypothetical protein complement(1763857..1764855) Lactobacillus fermentum IFO 3956 6233212 YP_001844379.1 CDS LAF_1563 NC_010610.1 1765091 1765753 R hypothetical protein complement(1765091..1765753) Lactobacillus fermentum IFO 3956 6233213 YP_001844380.1 CDS LAF_1564 NC_010610.1 1765771 1767108 R hypothetical protein complement(1765771..1767108) Lactobacillus fermentum IFO 3956 6233214 YP_001844381.1 CDS LAF_1565 NC_010610.1 1767183 1768076 R malolactic regulator complement(1767183..1768076) Lactobacillus fermentum IFO 3956 6233215 YP_001844382.1 CDS LAF_1566 NC_010610.1 1768587 1769387 R transposase complement(1768587..1769387) Lactobacillus fermentum IFO 3956 6233216 YP_001844383.1 CDS LAF_1567 NC_010610.1 1771138 1772106 D transposase 1771138..1772106 Lactobacillus fermentum IFO 3956 6233217 YP_001844384.1 CDS LAF_1568 NC_010610.1 1772693 1773538 R transposase complement(1772693..1773538) Lactobacillus fermentum IFO 3956 6233218 YP_001844385.1 CDS LAF_1569 NC_010610.1 1773535 1774149 R transposase complement(1773535..1774149) Lactobacillus fermentum IFO 3956 6233219 YP_001844386.1 CDS LAF_1570 NC_010610.1 1775153 1776031 R transposase complement(1775153..1776031) Lactobacillus fermentum IFO 3956 6233220 YP_001844387.1 CDS LAF_1571 NC_010610.1 1776055 1776357 R hypothetical protein complement(1776055..1776357) Lactobacillus fermentum IFO 3956 6233221 YP_001844388.1 CDS LAF_1572 NC_010610.1 1777469 1778485 R transposase complement(1777469..1778485) Lactobacillus fermentum IFO 3956 6233222 YP_001844389.1 CDS LAF_1573 NC_010610.1 1778874 1779587 R hypothetical protein complement(1778874..1779587) Lactobacillus fermentum IFO 3956 6233223 YP_001844390.1 CDS LAF_1574 NC_010610.1 1781492 1782430 R transposase complement(1781492..1782430) Lactobacillus fermentum IFO 3956 6233224 YP_001844391.1 CDS LAF_1575 NC_010610.1 1783416 1784108 D hypothetical protein 1783416..1784108 Lactobacillus fermentum IFO 3956 6233225 YP_001844392.1 CDS LAF_1576 NC_010610.1 1785012 1785947 D transposase 1785012..1785947 Lactobacillus fermentum IFO 3956 6233226 YP_001844393.1 CDS LAF_1577 NC_010610.1 1786088 1786675 R peptidyl-prolyl cis-trans isomerase complement(1786088..1786675) Lactobacillus fermentum IFO 3956 6233227 YP_001844394.1 CDS LAF_1578 NC_010610.1 1786896 1788854 R PTS system sucrose-specific IIABC component complement(1786896..1788854) Lactobacillus fermentum IFO 3956 6233228 YP_001844395.1 CDS LAF_1579 NC_010610.1 1789003 1790046 R alcohol dehydrogenase complement(1789003..1790046) Lactobacillus fermentum IFO 3956 6233229 YP_001844396.1 CDS LAF_1580 NC_010610.1 1790587 1792059 D sucrose-6-phosphate hydrolase 1790587..1792059 Lactobacillus fermentum IFO 3956 6233230 YP_001844397.1 CDS LAF_1581 NC_010610.1 1792066 1793448 D hypothetical protein 1792066..1793448 Lactobacillus fermentum IFO 3956 6233231 YP_001844398.1 CDS LAF_1582 NC_010610.1 1793728 1794636 R transcriptional regulator complement(1793728..1794636) Lactobacillus fermentum IFO 3956 6233232 YP_001844399.1 CDS LAF_1583 NC_010610.1 1794673 1795560 R hypothetical protein complement(1794673..1795560) Lactobacillus fermentum IFO 3956 6233233 YP_001844400.1 CDS LAF_1584 NC_010610.1 1795613 1796218 D hypothetical protein 1795613..1796218 Lactobacillus fermentum IFO 3956 6233234 YP_001844401.1 CDS LAF_1585 NC_010610.1 1796465 1797961 R amino acid transporter complement(1796465..1797961) Lactobacillus fermentum IFO 3956 6233235 YP_001844402.1 CDS LAF_1586 NC_010610.1 1798379 1799299 D hypothetical protein 1798379..1799299 Lactobacillus fermentum IFO 3956 6233236 YP_001844403.1 CDS LAF_1587 NC_010610.1 1799644 1800897 R D-alanyl-D-alanine carboxypeptidase complement(1799644..1800897) Lactobacillus fermentum IFO 3956 6233237 YP_001844404.1 CDS LAF_1588 NC_010610.1 1801038 1801586 R hypothetical protein complement(1801038..1801586) Lactobacillus fermentum IFO 3956 6233238 YP_001844405.1 CDS LAF_1589 NC_010610.1 1801766 1802797 D hypothetical protein 1801766..1802797 Lactobacillus fermentum IFO 3956 6233239 YP_001844406.1 CDS LAF_1590 NC_010610.1 1802890 1803477 R hypothetical protein complement(1802890..1803477) Lactobacillus fermentum IFO 3956 6233240 YP_001844407.1 CDS LAF_1591 NC_010610.1 1803474 1803785 R hypothetical protein complement(1803474..1803785) Lactobacillus fermentum IFO 3956 6233241 YP_001844408.1 CDS LAF_1592 NC_010610.1 1803794 1806790 R hypothetical protein complement(1803794..1806790) Lactobacillus fermentum IFO 3956 6233242 YP_001844409.1 CDS LAF_1593 NC_010610.1 1806803 1807219 R hypothetical protein complement(1806803..1807219) Lactobacillus fermentum IFO 3956 6233243 YP_001844410.1 CDS LAF_1594 NC_010610.1 1807272 1807817 R transcriptional regulator complement(1807272..1807817) Lactobacillus fermentum IFO 3956 6233244 YP_001844411.1 CDS LAF_1595 NC_010610.1 1807958 1809406 D multidrug transport protein 1807958..1809406 Lactobacillus fermentum IFO 3956 6233245 YP_001844412.1 CDS LAF_1596 NC_010610.1 1809408 1810166 D hypothetical protein 1809408..1810166 Lactobacillus fermentum IFO 3956 6233246 YP_001844413.1 CDS LAF_1597 NC_010610.1 1810152 1810382 R hypothetical protein complement(1810152..1810382) Lactobacillus fermentum IFO 3956 6233247 YP_001844414.1 CDS LAF_1598 NC_010610.1 1810692 1811420 D hypothetical protein 1810692..1811420 Lactobacillus fermentum IFO 3956 6233248 YP_001844415.1 CDS LAF_1599 NC_010610.1 1811502 1811756 D hypothetical protein 1811502..1811756 Lactobacillus fermentum IFO 3956 6233249 YP_001844416.1 CDS LAF_1600 NC_010610.1 1812147 1812623 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(1812147..1812623) Lactobacillus fermentum IFO 3956 6233250 YP_001844417.1 CDS LAF_1601 NC_010610.1 1812684 1813799 R methionine synthase complement(1812684..1813799) Lactobacillus fermentum IFO 3956 6233251 YP_001844418.1 CDS LAF_1602 NC_010610.1 1814178 1815188 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(1814178..1815188) Lactobacillus fermentum IFO 3956 6233252 YP_001844419.1 CDS LAF_1603 NC_010610.1 1815382 1815978 D hypothetical protein 1815382..1815978 Lactobacillus fermentum IFO 3956 6233253 YP_001844420.1 CDS LAF_1604 NC_010610.1 1815997 1816518 D acetyltransferase 1815997..1816518 Lactobacillus fermentum IFO 3956 6233254 YP_001844421.1 CDS LAF_1605 NC_010610.1 1816815 1818335 D UV-damage repair protein 1816815..1818335 Lactobacillus fermentum IFO 3956 6233255 YP_001844422.1 CDS LAF_1606 NC_010610.1 1818332 1818790 D hypothetical protein 1818332..1818790 Lactobacillus fermentum IFO 3956 6233256 YP_001844423.1 CDS LAF_1607 NC_010610.1 1819275 1819697 R transcriptional regulator complement(1819275..1819697) Lactobacillus fermentum IFO 3956 6233257 YP_001844424.1 CDS LAF_1608 NC_010610.1 1819974 1820708 D hypothetical protein 1819974..1820708 Lactobacillus fermentum IFO 3956 6233258 YP_001844425.1 CDS LAF_1609 NC_010610.1 1820709 1821725 D hypothetical protein 1820709..1821725 Lactobacillus fermentum IFO 3956 6233259 YP_001844426.1 CDS LAF_1610 NC_010610.1 1821728 1822141 D biotin carboxyl carrier protein 1821728..1822141 Lactobacillus fermentum IFO 3956 6233260 YP_001844427.1 CDS LAF_1611 NC_010610.1 1822113 1823501 D biotin carboxylase 1822113..1823501 Lactobacillus fermentum IFO 3956 6233261 YP_001844428.1 CDS LAF_1612 NC_010610.1 1823488 1824237 D hypothetical protein 1823488..1824237 Lactobacillus fermentum IFO 3956 6233262 YP_001844429.1 CDS LAF_1613 NC_010610.1 1824250 1825461 D hypothetical protein 1824250..1825461 Lactobacillus fermentum IFO 3956 6233263 YP_001844430.1 CDS LAF_1614 NC_010610.1 1825673 1826842 R transpot protein complement(1825673..1826842) Lactobacillus fermentum IFO 3956 6233264 YP_001844431.1 CDS LAF_1615 NC_010610.1 1827422 1828753 R glutathione reductase complement(1827422..1828753) Lactobacillus fermentum IFO 3956 6233265 YP_001844432.1 CDS LAF_1616 NC_010610.1 1828907 1829221 R thioredoxin complement(1828907..1829221) Lactobacillus fermentum IFO 3956 6233266 YP_001844433.1 CDS LAF_1617 NC_010610.1 1829369 1830295 D transport protein 1829369..1830295 Lactobacillus fermentum IFO 3956 6233267 YP_001844434.1 CDS LAF_1618 NC_010610.1 1830779 1831942 R transposase complement(1830779..1831942) Lactobacillus fermentum IFO 3956 6233268 YP_001844435.1 CDS LAF_1619 NC_010610.1 1832670 1834022 R catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase complement(1832670..1834022) Lactobacillus fermentum IFO 3956 6232574 YP_001844436.1 CDS LAF_1620 NC_010610.1 1834003 1835457 R amino acid transporter complement(1834003..1835457) Lactobacillus fermentum IFO 3956 6232575 YP_001844437.1 CDS LAF_1621 NC_010610.1 1835762 1836235 R hypothetical protein complement(1835762..1836235) Lactobacillus fermentum IFO 3956 6232576 YP_001844438.1 CDS LAF_1622 NC_010610.1 1836381 1837211 R hypothetical protein complement(1836381..1837211) Lactobacillus fermentum IFO 3956 6232698 YP_001844439.1 CDS LAF_1623 NC_010610.1 1837556 1837690 R hypothetical protein complement(1837556..1837690) Lactobacillus fermentum IFO 3956 6232699 YP_001844440.1 CDS LAF_1624 NC_010610.1 1837902 1839284 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1837902..1839284) Lactobacillus fermentum IFO 3956 6232700 YP_001844441.1 CDS LAF_1625 NC_010610.1 1839284 1840522 R argininosuccinate synthase complement(1839284..1840522) Lactobacillus fermentum IFO 3956 6232701 YP_001844442.1 CDS LAF_1626 NC_010610.1 1840782 1842659 R hypothetical protein complement(1840782..1842659) Lactobacillus fermentum IFO 3956 6232702 YP_001844443.1 CDS LAF_1627 NC_010610.1 1842652 1843224 R hypothetical protein complement(1842652..1843224) Lactobacillus fermentum IFO 3956 6232703 YP_001844444.1 CDS LAF_1628 NC_010610.1 1843690 1844643 D ABC transporter permease 1843690..1844643 Lactobacillus fermentum IFO 3956 6232704 YP_001844445.1 CDS LAF_1629 NC_010610.1 1844670 1845188 R hypothetical protein complement(1844670..1845188) Lactobacillus fermentum IFO 3956 6232705 YP_001844446.1 CDS LAF_1630 NC_010610.1 1845355 1847340 R ABC transporter ATP-binding protein/permease complement(1845355..1847340) Lactobacillus fermentum IFO 3956 6232706 YP_001844447.1 CDS LAF_1631 NC_010610.1 1847397 1848095 D hypothetical protein 1847397..1848095 Lactobacillus fermentum IFO 3956 6232707 YP_001844448.1 CDS LAF_1632 NC_010610.1 1848342 1849622 R 1-deoxyxylulose-5-phosphate synthase complement(1848342..1849622) Lactobacillus fermentum IFO 3956 6232708 YP_001844449.1 CDS LAF_1633 NC_010610.1 1849932 1850954 R transposase complement(1849932..1850954) Lactobacillus fermentum IFO 3956 6232709 YP_001844450.1 CDS LAF_1634 NC_010610.1 1851256 1851711 D transposase 1851256..1851711 Lactobacillus fermentum IFO 3956 6232710 YP_001844451.1 CDS LAF_1635 NC_010610.1 1851774 1852112 R hypothetical protein complement(1851774..1852112) Lactobacillus fermentum IFO 3956 6232711 YP_001844452.1 CDS LAF_1636 NC_010610.1 1852843 1852986 D hypothetical protein 1852843..1852986 Lactobacillus fermentum IFO 3956 6232712 YP_001844453.1 CDS LAF_1637 NC_010610.1 1853036 1853986 R hypothetical protein complement(1853036..1853986) Lactobacillus fermentum IFO 3956 6232713 YP_001844454.1 CDS LAF_1638 NC_010610.1 1854055 1854375 R hypothetical protein complement(1854055..1854375) Lactobacillus fermentum IFO 3956 6232714 YP_001844455.1 CDS LAF_1639 NC_010610.1 1854423 1854995 R hypothetical protein complement(1854423..1854995) Lactobacillus fermentum IFO 3956 6232715 YP_001844456.1 CDS LAF_1640 NC_010610.1 1855032 1855181 R hypothetical protein complement(1855032..1855181) Lactobacillus fermentum IFO 3956 6232716 YP_001844457.1 CDS LAF_1641 NC_010610.1 1855206 1855910 R hypothetical protein complement(1855206..1855910) Lactobacillus fermentum IFO 3956 6232717 YP_001844458.1 CDS LAF_1642 NC_010610.1 1856441 1859206 D cation-transporting ATPase 1856441..1859206 Lactobacillus fermentum IFO 3956 6232718 YP_001844459.1 CDS LAF_1643 NC_010610.1 1859441 1861783 R nitric oxide reductase complement(1859441..1861783) Lactobacillus fermentum IFO 3956 6232719 YP_001844460.1 CDS LAF_1644 NC_010610.1 1864309 1864920 D hypothetical protein 1864309..1864920 Lactobacillus fermentum IFO 3956 6232720 YP_001844461.1 CDS LAF_1645 NC_010610.1 1866123 1867343 R transposase complement(1866123..1867343) Lactobacillus fermentum IFO 3956 6232721 YP_001844462.1 CDS LAF_1646 NC_010610.1 1868525 1869448 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1868525..1869448) Lactobacillus fermentum IFO 3956 6232722 YP_001844463.1 CDS LAF_1647 NC_010610.1 1869559 1870110 D hypothetical protein 1869559..1870110 Lactobacillus fermentum IFO 3956 6232723 YP_001844464.1 CDS LAF_1648 NC_010610.1 1870330 1871079 R short chain dehydrogenase complement(1870330..1871079) Lactobacillus fermentum IFO 3956 6232724 YP_001844465.1 CDS LAF_1649 NC_010610.1 1871368 1873461 R phosphoglycerol transferase complement(1871368..1873461) Lactobacillus fermentum IFO 3956 6232725 YP_001844466.1 CDS LAF_1650 NC_010610.1 1873653 1874600 D transport protein 1873653..1874600 Lactobacillus fermentum IFO 3956 6232726 YP_001844467.1 CDS LAF_1651 NC_010610.1 1874693 1876987 R DNA helicase complement(1874693..1876987) Lactobacillus fermentum IFO 3956 6232727 YP_001844468.1 CDS LAF_1652 NC_010610.1 1877170 1877826 D hypothetical protein 1877170..1877826 Lactobacillus fermentum IFO 3956 6232728 YP_001844469.1 CDS LAF_1653 NC_010610.1 1877951 1878595 D phosphoglycerate mutase 1877951..1878595 Lactobacillus fermentum IFO 3956 6232729 YP_001844470.1 CDS LAF_1654 NC_010610.1 1878617 1879894 D GTPase 1878617..1879894 Lactobacillus fermentum IFO 3956 6232730 YP_001844471.1 CDS LAF_1655 NC_010610.1 1880116 1881225 D N-acylamino acid racemase 1880116..1881225 Lactobacillus fermentum IFO 3956 6232731 YP_001844472.1 CDS LAF_1656 NC_010610.1 1881287 1882009 R nicotinamide mononucleotide transport protein complement(1881287..1882009) Lactobacillus fermentum IFO 3956 6232732 YP_001844473.1 CDS LAF_1657 NC_010610.1 1882358 1883971 R amino acid transporter complement(1882358..1883971) Lactobacillus fermentum IFO 3956 6232733 YP_001844474.1 CDS LAF_1658 NC_010610.1 1884130 1884627 R acetyltransferase complement(1884130..1884627) Lactobacillus fermentum IFO 3956 6232577 YP_001844475.1 CDS LAF_1659 NC_010610.1 1884789 1885559 R transposase complement(1884789..1885559) Lactobacillus fermentum IFO 3956 6232578 YP_001844476.1 CDS LAF_1660 NC_010610.1 1885783 1888524 R hypothetical protein complement(1885783..1888524) Lactobacillus fermentum IFO 3956 6232579 YP_001844477.1 CDS LAF_1661 NC_010610.1 1888542 1889093 R hypothetical protein complement(1888542..1889093) Lactobacillus fermentum IFO 3956 6232862 YP_001844478.1 CDS LAF_1662 NC_010610.1 1889304 1890347 D aldose 1-epimerase 1889304..1890347 Lactobacillus fermentum IFO 3956 6232863 YP_001844479.1 CDS LAF_1663 NC_010610.1 1890599 1891516 R hypothetical protein complement(1890599..1891516) Lactobacillus fermentum IFO 3956 6232864 YP_001844480.1 CDS LAF_1664 NC_010610.1 1891528 1892028 R hypothetical protein complement(1891528..1892028) Lactobacillus fermentum IFO 3956 6232865 YP_001844481.1 CDS LAF_1665 NC_010610.1 1892090 1892539 R metal uptake regulator complement(1892090..1892539) Lactobacillus fermentum IFO 3956 6232866 YP_001844482.1 CDS LAF_1666 NC_010610.1 1892581 1893165 R guanylate kinase complement(1892581..1893165) Lactobacillus fermentum IFO 3956 6232867 YP_001844483.1 CDS LAF_1667 NC_010610.1 1893165 1893590 R hypothetical protein complement(1893165..1893590) Lactobacillus fermentum IFO 3956 6232868 YP_001844484.1 CDS LAF_1668 NC_010610.1 1895558 1897954 D catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1895558..1897954 Lactobacillus fermentum IFO 3956 6232869 YP_001844485.1 CDS LAF_1669 NC_010610.1 1898036 1898947 D prolinase 1898036..1898947 Lactobacillus fermentum IFO 3956 6232870 YP_001844486.1 CDS LAF_1670 NC_010610.1 1898969 1899607 D hypothetical protein 1898969..1899607 Lactobacillus fermentum IFO 3956 6232871 YP_001844487.1 CDS LAF_1671 NC_010610.1 1899878 1901662 D hypothetical protein 1899878..1901662 Lactobacillus fermentum IFO 3956 6232872 YP_001844488.1 CDS LAF_1672 NC_010610.1 1901890 1902840 R ribonucleoside-diphosphate reductase subunit beta complement(1901890..1902840) Lactobacillus fermentum IFO 3956 6232873 YP_001844489.1 CDS LAF_1673 NC_010610.1 1902850 1903770 R ribonucleoside-diphosphate reductase subunit beta complement(1902850..1903770) Lactobacillus fermentum IFO 3956 6232874 YP_001844490.1 CDS LAF_1674 NC_010610.1 1903781 1905946 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(1903781..1905946) Lactobacillus fermentum IFO 3956 6232580 YP_001844491.1 CDS LAF_1675 NC_010610.1 1905943 1906404 R ribonucleotide reductase complement(1905943..1906404) Lactobacillus fermentum IFO 3956 6232581 YP_001844492.1 CDS LAF_1676 NC_010610.1 1906662 1907357 D cell surface protein 1906662..1907357 Lactobacillus fermentum IFO 3956 6232582 YP_001844493.1 CDS LAF_1677 NC_010610.1 1907350 1907493 D hypothetical protein 1907350..1907493 Lactobacillus fermentum IFO 3956 6232998 YP_001844494.1 CDS LAF_1678 NC_010610.1 1907712 1908872 R hypothetical protein complement(1907712..1908872) Lactobacillus fermentum IFO 3956 6232999 YP_001844495.1 CDS LAF_1679 NC_010610.1 1908875 1910419 R ABC transporter ATP-binding protein complement(1908875..1910419) Lactobacillus fermentum IFO 3956 6233000 YP_001844496.1 CDS LAF_1680 NC_010610.1 1910978 1911970 D ABC transporter substrate-binding protein 1910978..1911970 Lactobacillus fermentum IFO 3956 6233001 YP_001844497.1 CDS LAF_1681 NC_010610.1 1911970 1912869 D ABC transporter permease 1911970..1912869 Lactobacillus fermentum IFO 3956 6233002 YP_001844498.1 CDS LAF_1682 NC_010610.1 1912862 1913623 D ABC transporter ATP-binding protein 1912862..1913623 Lactobacillus fermentum IFO 3956 6233003 YP_001844499.1 CDS LAF_1683 NC_010610.1 1914288 1915502 R ammonium transport protein complement(1914288..1915502) Lactobacillus fermentum IFO 3956 6233004 YP_001844500.1 CDS LAF_1684 NC_010610.1 1915739 1917058 D hypothetical protein 1915739..1917058 Lactobacillus fermentum IFO 3956 6233005 YP_001844501.1 CDS LAF_1685 NC_010610.1 1917343 1918224 R fructokinase complement(1917343..1918224) Lactobacillus fermentum IFO 3956 6233006 YP_001844502.1 CDS LAF_1686 NC_010610.1 1918238 1919590 R glucose-6-phosphate isomerase complement(1918238..1919590) Lactobacillus fermentum IFO 3956 6233007 YP_001844503.1 CDS LAF_1687 NC_010610.1 1919762 1920745 R operon repressor complement(1919762..1920745) Lactobacillus fermentum IFO 3956 6233008 YP_001844504.1 CDS LAF_1688 NC_010610.1 1920729 1921613 R 3-hydroxyisobutyrate dehydrogenase complement(1920729..1921613) Lactobacillus fermentum IFO 3956 6233009 YP_001844505.1 CDS LAF_1689 NC_010610.1 1921733 1922653 R ribokinase complement(1921733..1922653) Lactobacillus fermentum IFO 3956 6233010 YP_001844506.1 CDS LAF_1690 NC_010610.1 1922938 1923258 R thioredoxin complement(1922938..1923258) Lactobacillus fermentum IFO 3956 6233011 YP_001844507.1 CDS LAF_1691 NC_010610.1 1923233 1924042 R hypothetical protein complement(1923233..1924042) Lactobacillus fermentum IFO 3956 6233012 YP_001844508.1 CDS LAF_1692 NC_010610.1 1924099 1924983 R pseudouridylate synthase complement(1924099..1924983) Lactobacillus fermentum IFO 3956 6233013 YP_001844509.1 CDS LAF_1693 NC_010610.1 1925076 1925996 D magnesium transport protein 1925076..1925996 Lactobacillus fermentum IFO 3956 6233014 YP_001844510.1 CDS LAF_1694 NC_010610.1 1926219 1927550 D xanthine-uracil transport protein 1926219..1927550 Lactobacillus fermentum IFO 3956 6233015 YP_001844511.1 CDS LAF_1695 NC_010610.1 1927581 1928435 R hypothetical protein complement(1927581..1928435) Lactobacillus fermentum IFO 3956 6233016 YP_001844512.1 CDS LAF_1696 NC_010610.1 1928719 1929372 R phosphoglycerate mutase complement(1928719..1929372) Lactobacillus fermentum IFO 3956 6233017 YP_001844513.1 CDS LAF_1697 NC_010610.1 1929596 1931725 D alkaline phosphatase 1929596..1931725 Lactobacillus fermentum IFO 3956 6233018 YP_001844514.1 CDS LAF_1698 NC_010610.1 1931895 1932557 D hypothetical protein 1931895..1932557 Lactobacillus fermentum IFO 3956 6233019 YP_001844515.1 CDS LAF_1699 NC_010610.1 1932658 1933305 R transcriptional regulator complement(1932658..1933305) Lactobacillus fermentum IFO 3956 6233020 YP_001844516.1 CDS LAF_1700 NC_010610.1 1933283 1933831 R hypothetical protein complement(1933283..1933831) Lactobacillus fermentum IFO 3956 6233021 YP_001844517.1 CDS LAF_1701 NC_010610.1 1933831 1934061 R hypothetical protein complement(1933831..1934061) Lactobacillus fermentum IFO 3956 6233027 YP_001844518.1 CDS LAF_1702 NC_010610.1 1934123 1935976 R cation-transporting ATPase complement(1934123..1935976) Lactobacillus fermentum IFO 3956 6233028 YP_001844519.1 CDS LAF_1703 NC_010610.1 1936170 1937162 R thioredoxin reductase complement(1936170..1937162) Lactobacillus fermentum IFO 3956 6233029 YP_001844520.1 CDS LAF_1704 NC_010610.1 1937335 1938294 D inosine-uridine nucleoside 1937335..1938294 Lactobacillus fermentum IFO 3956 6233030 YP_001844521.1 CDS LAF_1705 NC_010610.1 1938831 1939400 D hypothetical protein 1938831..1939400 Lactobacillus fermentum IFO 3956 6233031 YP_001844522.1 CDS LAF_1706 NC_010610.1 1939404 1940786 D ABC transporter ATP-binding protein 1939404..1940786 Lactobacillus fermentum IFO 3956 6233032 YP_001844523.1 CDS LAF_1707 NC_010610.1 1940776 1941429 D ABC transporter permease 1940776..1941429 Lactobacillus fermentum IFO 3956 6233033 YP_001844524.1 CDS LAF_1708 NC_010610.1 1941471 1941833 D hypothetical protein 1941471..1941833 Lactobacillus fermentum IFO 3956 6233034 YP_001844525.1 CDS LAF_1709 NC_010610.1 1941924 1943885 D Na-H antiporter 1941924..1943885 Lactobacillus fermentum IFO 3956 6233035 YP_001844526.1 CDS LAF_1710 NC_010610.1 1944303 1945316 R lipoate-protein ligase complement(1944303..1945316) Lactobacillus fermentum IFO 3956 6233036 YP_001844527.1 CDS LAF_1711 NC_010610.1 1945328 1945918 R hypothetical protein complement(1945328..1945918) Lactobacillus fermentum IFO 3956 6233037 YP_001844528.1 CDS LAF_1712 NC_010610.1 1946124 1947086 R hypothetical protein complement(1946124..1947086) Lactobacillus fermentum IFO 3956 6233038 YP_001844529.1 CDS LAF_1713 NC_010610.1 1947216 1947641 D transcriptional regulator 1947216..1947641 Lactobacillus fermentum IFO 3956 6233039 YP_001844530.1 CDS LAF_1714 NC_010610.1 1947638 1948489 D hypothetical protein 1947638..1948489 Lactobacillus fermentum IFO 3956 6233040 YP_001844531.1 CDS LAF_1715 NC_010610.1 1948860 1949336 R hypothetical protein complement(1948860..1949336) Lactobacillus fermentum IFO 3956 6233041 YP_001844532.1 CDS LAF_1716 NC_010610.1 1949343 1949741 R hypothetical protein complement(1949343..1949741) Lactobacillus fermentum IFO 3956 6233042 YP_001844533.1 CDS LAF_1717 NC_010610.1 1949858 1950310 D hypothetical protein 1949858..1950310 Lactobacillus fermentum IFO 3956 6233043 YP_001844534.1 CDS LAF_1718 NC_010610.1 1950337 1950687 D hypothetical protein 1950337..1950687 Lactobacillus fermentum IFO 3956 6233044 YP_001844535.1 CDS LAF_1719 NC_010610.1 1950867 1951685 D hypothetical protein 1950867..1951685 Lactobacillus fermentum IFO 3956 6233045 YP_001844536.1 CDS LAF_1720 NC_010610.1 1951781 1953142 R glycerol-3-phosphate transport protein complement(1951781..1953142) Lactobacillus fermentum IFO 3956 6233046 YP_001844537.1 CDS LAF_1721 NC_010610.1 1953353 1955356 R transketolase complement(1953353..1955356) Lactobacillus fermentum IFO 3956 6233047 YP_001844538.1 CDS LAF_1722 NC_010610.1 1955369 1956115 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(1955369..1956115) Lactobacillus fermentum IFO 3956 6233048 YP_001844539.1 CDS LAF_1723 NC_010610.1 1956524 1957060 D hypothetical protein 1956524..1957060 Lactobacillus fermentum IFO 3956 6233049 YP_001844540.1 CDS LAF_1724 NC_010610.1 1957057 1957944 D transposase 1957057..1957944 Lactobacillus fermentum IFO 3956 6233050 YP_001844541.1 CDS LAF_1725 NC_010610.1 1958006 1958686 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(1958006..1958686) Lactobacillus fermentum IFO 3956 6233051 YP_001844542.1 CDS LAF_1726 NC_010610.1 1960771 1962057 R transposase complement(1960771..1962057) Lactobacillus fermentum IFO 3956 6233052 YP_001844543.1 CDS LAF_1727 NC_010610.1 1962276 1963124 D transposase 1962276..1963124 Lactobacillus fermentum IFO 3956 6233053 YP_001844544.1 CDS LAF_1728 NC_010610.1 1963424 1964437 R nickel transport protein complement(1963424..1964437) Lactobacillus fermentum IFO 3956 6233054 YP_001844545.1 CDS LAF_1729 NC_010610.1 1964463 1965290 R hypothetical protein complement(1964463..1965290) Lactobacillus fermentum IFO 3956 6233055 YP_001844546.1 CDS LAF_1730 NC_010610.1 1965315 1966025 R glycerol uptake facilitator protein complement(1965315..1966025) Lactobacillus fermentum IFO 3956 6233056 YP_001844547.1 CDS LAF_1731 NC_010610.1 1966027 1967391 R hypothetical protein complement(1966027..1967391) Lactobacillus fermentum IFO 3956 6233057 YP_001844548.1 CDS LAF_1732 NC_010610.1 1967391 1968149 R hypothetical protein complement(1967391..1968149) Lactobacillus fermentum IFO 3956 6233058 YP_001844549.1 CDS LAF_1733 NC_010610.1 1968157 1969440 R hypothetical protein complement(1968157..1969440) Lactobacillus fermentum IFO 3956 6232583 YP_001844550.1 CDS LAF_1734 NC_010610.1 1969681 1970352 D transcriptional regulator 1969681..1970352 Lactobacillus fermentum IFO 3956 6232584 YP_001844551.1 CDS LAF_1735 NC_010610.1 1972532 1974253 R PTS system enzyme I complement(1972532..1974253) Lactobacillus fermentum IFO 3956 6233111 YP_001844552.1 CDS LAF_1736 NC_010610.1 1974441 1975769 R fucose transport protein complement(1974441..1975769) Lactobacillus fermentum IFO 3956 6233112 YP_001844553.1 CDS LAF_1737 NC_010610.1 1975784 1976179 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1975784..1976179) Lactobacillus fermentum IFO 3956 6233113 YP_001844554.1 CDS LAF_1738 NC_010610.1 1976203 1977120 R ribokinase complement(1976203..1977120) Lactobacillus fermentum IFO 3956 6233114 YP_001844555.1 CDS LAF_1739 NC_010610.1 1977365 1978318 R deoxyribonucleoside regulator complement(1977365..1978318) Lactobacillus fermentum IFO 3956 6233115 YP_001844556.1 CDS LAF_1740 NC_010610.1 1978428 1979081 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1978428..1979081 Lactobacillus fermentum IFO 3956 6233116 YP_001844557.1 CDS LAF_1741 NC_010610.1 1979095 1980111 D hypothetical protein 1979095..1980111 Lactobacillus fermentum IFO 3956 6233117 YP_001844558.1 CDS LAF_1742 NC_010610.1 1980145 1981092 D ribokinase 1980145..1981092 Lactobacillus fermentum IFO 3956 6233118 YP_001844559.1 CDS LAF_1743 NC_010610.1 1981152 1982576 R PTS system galactitol-specific IIC component complement(1981152..1982576) Lactobacillus fermentum IFO 3956 6233119 YP_001844560.1 CDS LAF_1744 NC_010610.1 1982774 1983778 D transcriptional regulator 1982774..1983778 Lactobacillus fermentum IFO 3956 6233120 YP_001844561.1 CDS LAF_1745 NC_010610.1 1984332 1985837 R amino acid transporter complement(1984332..1985837) Lactobacillus fermentum IFO 3956 6233121 YP_001844562.1 CDS LAF_1746 NC_010610.1 1986414 1986848 R hypothetical protein complement(1986414..1986848) Lactobacillus fermentum IFO 3956 6233122 YP_001844563.1 CDS LAF_1747 NC_010610.1 1987128 1989527 R phosphoketolase complement(1987128..1989527) Lactobacillus fermentum IFO 3956 6233123 YP_001844564.1 CDS LAF_1748 NC_010610.1 1989733 1990530 R hypothetical protein complement(1989733..1990530) Lactobacillus fermentum IFO 3956 6233124 YP_001844565.1 CDS LAF_1749 NC_010610.1 1990537 1991265 R transcriptional regulator complement(1990537..1991265) Lactobacillus fermentum IFO 3956 6233125 YP_001844566.1 CDS LAF_1750 NC_010610.1 1991409 1991909 D hypothetical protein 1991409..1991909 Lactobacillus fermentum IFO 3956 6233126 YP_001844567.1 CDS LAF_1751 NC_010610.1 1991913 1992656 D hypothetical protein 1991913..1992656 Lactobacillus fermentum IFO 3956 6233127 YP_001844568.1 CDS LAF_1752 NC_010610.1 1992716 1994152 D dipeptidase 1992716..1994152 Lactobacillus fermentum IFO 3956 6233128 YP_001844569.1 CDS LAF_1753 NC_010610.1 1994631 1995443 D hypothetical protein 1994631..1995443 Lactobacillus fermentum IFO 3956 6233129 YP_001844570.1 CDS LAF_1754 NC_010610.1 1995703 1996218 R hypothetical protein complement(1995703..1996218) Lactobacillus fermentum IFO 3956 6233130 YP_001844571.1 CDS LAF_1755 NC_010610.1 1996228 1996875 R hypothetical protein complement(1996228..1996875) Lactobacillus fermentum IFO 3956 6233131 YP_001844572.1 CDS LAF_1756 NC_010610.1 1996904 1998289 D hypothetical protein 1996904..1998289 Lactobacillus fermentum IFO 3956 6233132 YP_001844573.1 CDS LAF_1757 NC_010610.1 1998376 1998840 D ribonucleotide reductase 1998376..1998840 Lactobacillus fermentum IFO 3956 6233133 YP_001844574.1 CDS LAF_1758 NC_010610.1 1999085 1999516 R hypothetical protein complement(1999085..1999516) Lactobacillus fermentum IFO 3956 6233134 YP_001844575.1 CDS LAF_1759 NC_010610.1 1999709 2000878 D transport protein 1999709..2000878 Lactobacillus fermentum IFO 3956 6233135 YP_001844576.1 CDS LAF_1760 NC_010610.1 2001318 2002799 D glucose-6-phosphate 1-dehydrogenase 2001318..2002799 Lactobacillus fermentum IFO 3956 6233136 YP_001844577.1 CDS LAF_1761 NC_010610.1 2002983 2004422 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2002983..2004422 Lactobacillus fermentum IFO 3956 6233137 YP_001844578.1 CDS LAF_1762 NC_010610.1 2004677 2005150 R hypothetical protein complement(2004677..2005150) Lactobacillus fermentum IFO 3956 6233138 YP_001844579.1 CDS LAF_1763 NC_010610.1 2005312 2005767 D transcriptional regulator 2005312..2005767 Lactobacillus fermentum IFO 3956 6233139 YP_001844580.1 CDS LAF_1764 NC_010610.1 2005925 2006692 D oxidoreductase 2005925..2006692 Lactobacillus fermentum IFO 3956 6233140 YP_001844581.1 CDS LAF_1765 NC_010610.1 2006709 2007710 D transcriptional regulator 2006709..2007710 Lactobacillus fermentum IFO 3956 6233141 YP_001844582.1 CDS LAF_1766 NC_010610.1 2007982 2009790 R oligoendopeptidase F complement(2007982..2009790) Lactobacillus fermentum IFO 3956 6233142 YP_001844583.1 CDS LAF_1767 NC_010610.1 2009793 2011085 R proton/sodium-glutamate symport protein complement(2009793..2011085) Lactobacillus fermentum IFO 3956 6233143 YP_001844584.1 CDS LAF_1768 NC_010610.1 2011333 2012004 D hypothetical protein 2011333..2012004 Lactobacillus fermentum IFO 3956 6233144 YP_001844585.1 CDS LAF_1769 NC_010610.1 2012711 2013478 D transposase 2012711..2013478 Lactobacillus fermentum IFO 3956 6233145 YP_001844586.1 CDS LAF_1770 NC_010610.1 2013659 2015056 D D-lactate dehydrogenase 2013659..2015056 Lactobacillus fermentum IFO 3956 6233146 YP_001844587.1 CDS LAF_1771 NC_010610.1 2015160 2016347 D transposase 2015160..2016347 Lactobacillus fermentum IFO 3956 6233147 YP_001844588.1 CDS LAF_1772 NC_010610.1 2017287 2017946 R 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II complement(2017287..2017946) Lactobacillus fermentum IFO 3956 6233148 YP_001844589.1 CDS LAF_1773 NC_010610.1 2018424 2018852 R hypothetical protein complement(2018424..2018852) Lactobacillus fermentum IFO 3956 6233149 YP_001844590.1 CDS LAF_1774 NC_010610.1 2018833 2019189 R hypothetical protein complement(2018833..2019189) Lactobacillus fermentum IFO 3956 6233150 YP_001844591.1 CDS LAF_1775 NC_010610.1 2019191 2019913 R hypothetical protein complement(2019191..2019913) Lactobacillus fermentum IFO 3956 6233151 YP_001844592.1 CDS LAF_1776 NC_010610.1 2020986 2021822 D transcriptional regulator 2020986..2021822 Lactobacillus fermentum IFO 3956 6233152 YP_001844593.1 CDS LAF_1777 NC_010610.1 2022493 2024715 R alpha-galactosidase complement(2022493..2024715) Lactobacillus fermentum IFO 3956 6233153 YP_001844594.1 CDS LAF_1778 NC_010610.1 2024980 2026167 D transposase 2024980..2026167 Lactobacillus fermentum IFO 3956 6233154 YP_001844595.1 CDS LAF_1779 NC_010610.1 2026178 2027152 R hypothetical protein complement(2026178..2027152) Lactobacillus fermentum IFO 3956 6233155 YP_001844596.1 CDS LAF_1780 NC_010610.1 2027149 2028369 R transposase complement(2027149..2028369) Lactobacillus fermentum IFO 3956 6233156 YP_001844597.1 CDS LAF_1781 NC_010610.1 2030677 2031600 D transposase 2030677..2031600 Lactobacillus fermentum IFO 3956 6233157 YP_001844598.1 CDS LAF_1782 NC_010610.1 2034381 2035601 R transposase complement(2034381..2035601) Lactobacillus fermentum IFO 3956 6233158 YP_001844599.1 CDS LAF_1783 NC_010610.1 2035967 2036449 D resolvase 2035967..2036449 Lactobacillus fermentum IFO 3956 6233159 YP_001844600.1 CDS LAF_1784 NC_010610.1 2036778 2037449 R ABC transporter ATP-binding protein complement(2036778..2037449) Lactobacillus fermentum IFO 3956 6233160 YP_001844601.1 CDS LAF_1785 NC_010610.1 2037454 2038500 R ABC transporter permease complement(2037454..2038500) Lactobacillus fermentum IFO 3956 6233161 YP_001844602.1 CDS LAF_1786 NC_010610.1 2038615 2039802 R transposase complement(2038615..2039802) Lactobacillus fermentum IFO 3956 6233162 YP_001844603.1 CDS LAF_1787 NC_010610.1 2039906 2040355 R phytoene/squalene synthase complement(2039906..2040355) Lactobacillus fermentum IFO 3956 6233163 YP_001844604.1 CDS LAF_1788 NC_010610.1 2041272 2042120 D transposase 2041272..2042120 Lactobacillus fermentum IFO 3956 6233164 YP_001844605.1 CDS LAF_1789 NC_010610.1 2043119 2043727 D transposase 2043119..2043727 Lactobacillus fermentum IFO 3956 6233165 YP_001844606.1 CDS LAF_1790 NC_010610.1 2043875 2044876 R galactose operon repressor complement(2043875..2044876) Lactobacillus fermentum IFO 3956 6233166 YP_001844607.1 CDS LAF_1791 NC_010610.1 2044904 2046358 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(2044904..2046358) Lactobacillus fermentum IFO 3956 6233167 YP_001844608.1 CDS LAF_1792 NC_010610.1 2046386 2047552 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(2046386..2047552) Lactobacillus fermentum IFO 3956 6233168 YP_001844609.1 CDS LAF_1793 NC_010610.1 2047724 2048674 D hypothetical protein 2047724..2048674 Lactobacillus fermentum IFO 3956 6233169 YP_001844610.1 CDS LAF_1794 NC_010610.1 2048671 2049468 D protein-tyrosine phosphatase 2048671..2049468 Lactobacillus fermentum IFO 3956 6233170 YP_001844611.1 CDS LAF_1795 NC_010610.1 2049487 2049999 D hypothetical protein 2049487..2049999 Lactobacillus fermentum IFO 3956 6233171 YP_001844612.1 CDS LAF_1796 NC_010610.1 2050012 2050236 D hypothetical protein 2050012..2050236 Lactobacillus fermentum IFO 3956 6233172 YP_001844613.1 CDS LAF_1797 NC_010610.1 2050352 2051086 R amino acid ABC transporter ATP-binding protein complement(2050352..2051086) Lactobacillus fermentum IFO 3956 6233173 YP_001844614.1 CDS LAF_1798 NC_010610.1 2051088 2051777 R amino acid ABC transporter permease complement(2051088..2051777) Lactobacillus fermentum IFO 3956 6233174 YP_001844615.1 CDS LAF_1799 NC_010610.1 2051880 2052680 R amino acid ABC transporter substrate-binding protein complement(2051880..2052680) Lactobacillus fermentum IFO 3956 6233175 YP_001844616.1 CDS LAF_1800 NC_010610.1 2052819 2053145 R hypothetical protein complement(2052819..2053145) Lactobacillus fermentum IFO 3956 6233176 YP_001844617.1 CDS LAF_1801 NC_010610.1 2053247 2054185 D phosphoglycerate dehydrogenase 2053247..2054185 Lactobacillus fermentum IFO 3956 6233177 YP_001844618.1 CDS greA NC_010610.1 2054187 2054669 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2054187..2054669 Lactobacillus fermentum IFO 3956 6233178 YP_001844619.1 CDS LAF_1803 NC_010610.1 2054745 2055680 D hypothetical protein 2054745..2055680 Lactobacillus fermentum IFO 3956 6233179 YP_001844620.1 CDS LAF_1804 NC_010610.1 2055787 2056296 R hypothetical protein complement(2055787..2056296) Lactobacillus fermentum IFO 3956 6233180 YP_001844621.1 CDS LAF_1805 NC_010610.1 2056305 2058209 R endopeptidase complement(2056305..2058209) Lactobacillus fermentum IFO 3956 6233181 YP_001844622.1 CDS LAF_1806 NC_010610.1 2058469 2059779 R transport protein complement(2058469..2059779) Lactobacillus fermentum IFO 3956 6233182 YP_001844623.1 CDS LAF_1807 NC_010610.1 2059876 2060169 R hypothetical protein complement(2059876..2060169) Lactobacillus fermentum IFO 3956 6233183 YP_001844624.1 CDS LAF_1808 NC_010610.1 2060162 2061319 R hypothetical protein complement(2060162..2061319) Lactobacillus fermentum IFO 3956 6233184 YP_001844625.1 CDS LAF_1809 NC_010610.1 2061316 2062458 R hypothetical protein complement(2061316..2062458) Lactobacillus fermentum IFO 3956 6233185 YP_001844626.1 CDS LAF_1810 NC_010610.1 2062460 2063089 R 3-methyladenine DNA glycosylase complement(2062460..2063089) Lactobacillus fermentum IFO 3956 6233186 YP_001844627.1 CDS LAF_1811 NC_010610.1 2063149 2063517 D hypothetical protein 2063149..2063517 Lactobacillus fermentum IFO 3956 6233187 YP_001844628.1 CDS LAF_1812 NC_010610.1 2063808 2063993 R hypothetical protein complement(2063808..2063993) Lactobacillus fermentum IFO 3956 6233188 YP_001844629.1 CDS LAF_1813 NC_010610.1 2063994 2064668 R NAD(P)H oxidoreductase complement(2063994..2064668) Lactobacillus fermentum IFO 3956 6232585 YP_001844630.1 CDS LAF_1814 NC_010610.1 2064671 2064994 R hypothetical protein complement(2064671..2064994) Lactobacillus fermentum IFO 3956 6232586 YP_001844631.1 CDS LAF_1815 NC_010610.1 2065088 2065714 D hypothetical protein 2065088..2065714 Lactobacillus fermentum IFO 3956 6232587 YP_001844632.1 CDS LAF_1816 NC_010610.1 2065895 2066452 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2065895..2066452) Lactobacillus fermentum IFO 3956 6232588 YP_001844633.1 CDS LAF_1817 NC_010610.1 2066599 2067231 R hypothetical protein complement(2066599..2067231) Lactobacillus fermentum IFO 3956 6232589 YP_001844634.1 CDS LAF_1818 NC_010610.1 2067368 2067601 D hypothetical protein 2067368..2067601 Lactobacillus fermentum IFO 3956 6232590 YP_001844635.1 CDS LAF_1819 NC_010610.1 2067598 2068596 R sucrose operon repressor complement(2067598..2068596) Lactobacillus fermentum IFO 3956 6232591 YP_001844636.1 CDS LAF_1820 NC_010610.1 2068975 2071098 D hypothetical protein 2068975..2071098 Lactobacillus fermentum IFO 3956 6232592 YP_001844637.1 CDS LAF_1821 NC_010610.1 2071217 2071537 D transcriptional regulator 2071217..2071537 Lactobacillus fermentum IFO 3956 6232267 YP_001844638.1 CDS LAF_1822 NC_010610.1 2071782 2073068 D transposase 2071782..2073068 Lactobacillus fermentum IFO 3956 6232350 YP_001844639.1 CDS LAF_1823 NC_010610.1 2073199 2073657 R arginine repressor complement(2073199..2073657) Lactobacillus fermentum IFO 3956 6232351 YP_001844640.1 CDS LAF_1824 NC_010610.1 2073818 2074510 R ABC transporter ATP-binding protein complement(2073818..2074510) Lactobacillus fermentum IFO 3956 6232352 YP_001844641.1 CDS LAF_1825 NC_010610.1 2074523 2075548 R ABC transporter permease complement(2074523..2075548) Lactobacillus fermentum IFO 3956 6232353 YP_001844642.1 CDS LAF_1826 NC_010610.1 2075508 2076110 R transcriptional regulator complement(2075508..2076110) Lactobacillus fermentum IFO 3956 6232354 YP_001844643.1 CDS LAF_1827 NC_010610.1 2076267 2077277 R dehydrogenase complement(2076267..2077277) Lactobacillus fermentum IFO 3956 6232355 YP_001844644.1 CDS LAF_1828 NC_010610.1 2077573 2079135 D manganese transport protein 2077573..2079135 Lactobacillus fermentum IFO 3956 6232356 YP_001844645.1 CDS LAF_1829 NC_010610.1 2079510 2080253 D hypothetical protein 2079510..2080253 Lactobacillus fermentum IFO 3956 6232357 YP_001844646.1 CDS LAF_1830 NC_010610.1 2080470 2082374 D threonyl-tRNA synthase 2080470..2082374 Lactobacillus fermentum IFO 3956 6232358 YP_001844647.1 CDS LAF_1831 NC_010610.1 2082519 2083133 D hypothetical protein 2082519..2083133 Lactobacillus fermentum IFO 3956 6232359 YP_001844648.1 CDS LAF_1832 NC_010610.1 2083139 2084017 D hypothetical protein 2083139..2084017 Lactobacillus fermentum IFO 3956 6232360 YP_001844649.1 CDS LAF_1833 NC_010610.1 2084212 2084823 R signal peptidase I complement(2084212..2084823) Lactobacillus fermentum IFO 3956 6232361 YP_001844650.1 CDS murE NC_010610.1 2084898 2086454 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2084898..2086454) Lactobacillus fermentum IFO 3956 6232362 YP_001844651.1 CDS LAF_1835 NC_010610.1 2086459 2087994 R UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase complement(2086459..2087994) Lactobacillus fermentum IFO 3956 6232363 YP_001844652.1 CDS LAF_1836 NC_010610.1 2087994 2089904 R asparagine synthase complement(2087994..2089904) Lactobacillus fermentum IFO 3956 6232364 YP_001844653.1 CDS mscL NC_010610.1 2091743 2092120 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(2091743..2092120) Lactobacillus fermentum IFO 3956 6232365 YP_001844654.1 CDS LAF_1838 NC_010610.1 2092380 2094284 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(2092380..2094284) Lactobacillus fermentum IFO 3956 6232366 YP_001844655.1 CDS LAF_1839 NC_010610.1 2094299 2095687 R GTPase complement(2094299..2095687) Lactobacillus fermentum IFO 3956 6232367 YP_001844656.1 CDS LAF_1840 NC_010610.1 2095833 2096693 R hypothetical protein complement(2095833..2096693) Lactobacillus fermentum IFO 3956 6232368 YP_001844657.1 CDS LAF_1841 NC_010610.1 2096724 2097557 R hypothetical protein complement(2096724..2097557) Lactobacillus fermentum IFO 3956 6232369 YP_001844658.1 CDS rnpA NC_010610.1 2097573 2097917 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(2097573..2097917) Lactobacillus fermentum IFO 3956 6232370 YP_001844659.1 CDS LAF_1843 NC_010610.1 2098033 2098167 R 50S ribosomal protein L34 complement(2098033..2098167) Lactobacillus fermentum IFO 3956 6232371 LAF_tRNA01 tRNA LAF_tRNA01 NC_010610.1 16095 16167 R tRNA-Lys complement(16095..16167) Lactobacillus fermentum IFO 3956 6233588 LAF_tRNA02 tRNA LAF_tRNA02 NC_010610.1 87191 87262 D tRNA-Glu 87191..87262 Lactobacillus fermentum IFO 3956 6232166 LAF_tRNA03 tRNA LAF_tRNA03 NC_010610.1 174326 174398 D tRNA-Thr 174326..174398 Lactobacillus fermentum IFO 3956 6232377 LAF_tRNA04 tRNA LAF_tRNA04 NC_010610.1 217409 217482 D tRNA-Thr 217409..217482 Lactobacillus fermentum IFO 3956 6233448 LAF_tRNA05 tRNA LAF_tRNA05 NC_010610.1 275159 275232 D tRNA-Ile 275159..275232 Lactobacillus fermentum IFO 3956 6233024 LAF_tRNA06 tRNA LAF_tRNA06 NC_010610.1 275237 275309 D tRNA-Ala 275237..275309 Lactobacillus fermentum IFO 3956 6232386 LAF_tRNA07 tRNA LAF_tRNA07 NC_010610.1 278570 278642 D tRNA-Asn 278570..278642 Lactobacillus fermentum IFO 3956 6232379 LAF_tRNA08 tRNA LAF_tRNA08 NC_010610.1 278690 278762 D tRNA-Thr 278690..278762 Lactobacillus fermentum IFO 3956 6232388 LAF_tRNA09 tRNA LAF_tRNA09 NC_010610.1 306186 306268 D tRNA-Tyr 306186..306268 Lactobacillus fermentum IFO 3956 6233344 LAF_tRNA10 tRNA LAF_tRNA10 NC_010610.1 306278 306349 D tRNA-Gln 306278..306349 Lactobacillus fermentum IFO 3956 6232390 LAF_tRNA11 tRNA LAF_tRNA11 NC_010610.1 313718 313802 D tRNA-Leu 313718..313802 Lactobacillus fermentum IFO 3956 6233351 LAF_tRNA12 tRNA LAF_tRNA12 NC_010610.1 434036 434107 D tRNA-Arg 434036..434107 Lactobacillus fermentum IFO 3956 6232413 LAF_tRNA13 tRNA LAF_tRNA13 NC_010610.1 434125 434208 D tRNA-Leu 434125..434208 Lactobacillus fermentum IFO 3956 6232393 LAF_tRNA14 tRNA LAF_tRNA14 NC_010610.1 497064 497136 R tRNA-Glu complement(497064..497136) Lactobacillus fermentum IFO 3956 6232468 LAF_tRNA15 tRNA LAF_tRNA15 NC_010610.1 497689 497761 D tRNA-Gln 497689..497761 Lactobacillus fermentum IFO 3956 6232469 LAF_tRNA16 tRNA LAF_tRNA16 NC_010610.1 656233 656305 D tRNA-Val 656233..656305 Lactobacillus fermentum IFO 3956 6232380 LAF_tRNA17 tRNA LAF_tRNA17 NC_010610.1 656309 656381 D tRNA-Lys 656309..656381 Lactobacillus fermentum IFO 3956 6232397 LAF_tRNA18 tRNA LAF_tRNA18 NC_010610.1 656404 656476 D tRNA-Thr 656404..656476 Lactobacillus fermentum IFO 3956 6232398 LAF_tRNA19 tRNA LAF_tRNA19 NC_010610.1 656493 656564 D tRNA-Gly 656493..656564 Lactobacillus fermentum IFO 3956 6232399 LAF_tRNA20 tRNA LAF_tRNA20 NC_010610.1 656583 656668 D tRNA-Leu 656583..656668 Lactobacillus fermentum IFO 3956 6232400 LAF_tRNA21 tRNA LAF_tRNA21 NC_010610.1 656675 656748 D tRNA-Arg 656675..656748 Lactobacillus fermentum IFO 3956 6232401 LAF_tRNA22 tRNA LAF_tRNA22 NC_010610.1 656754 656827 D tRNA-Pro 656754..656827 Lactobacillus fermentum IFO 3956 6232402 LAF_tRNA23 tRNA LAF_tRNA23 NC_010610.1 656861 656934 D tRNA-Met 656861..656934 Lactobacillus fermentum IFO 3956 6232403 LAF_tRNA24 tRNA LAF_tRNA24 NC_010610.1 656951 657024 D tRNA-Met 656951..657024 Lactobacillus fermentum IFO 3956 6232404 LAF_tRNA25 tRNA LAF_tRNA25 NC_010610.1 657166 657239 D tRNA-Met 657166..657239 Lactobacillus fermentum IFO 3956 6232405 LAF_tRNA26 tRNA LAF_tRNA26 NC_010610.1 657247 657320 D tRNA-Asp 657247..657320 Lactobacillus fermentum IFO 3956 6232406 LAF_tRNA27 tRNA LAF_tRNA27 NC_010610.1 657335 657407 D tRNA-Phe 657335..657407 Lactobacillus fermentum IFO 3956 6232407 LAF_tRNA28 tRNA LAF_tRNA28 NC_010610.1 657412 657482 D tRNA-Gly 657412..657482 Lactobacillus fermentum IFO 3956 6232408 LAF_tRNA29 tRNA LAF_tRNA29 NC_010610.1 657491 657564 D tRNA-Ile 657491..657564 Lactobacillus fermentum IFO 3956 6232409 LAF_tRNA30 tRNA LAF_tRNA30 NC_010610.1 657793 657864 D tRNA-Glu 657793..657864 Lactobacillus fermentum IFO 3956 6232593 LAF_tRNA31 tRNA LAF_tRNA31 NC_010610.1 657875 657948 D tRNA-Met 657875..657948 Lactobacillus fermentum IFO 3956 6232594 LAF_tRNA32 tRNA LAF_tRNA32 NC_010610.1 657956 658029 D tRNA-Asp 657956..658029 Lactobacillus fermentum IFO 3956 6233550 LAF_tRNA33 tRNA LAF_tRNA33 NC_010610.1 759261 759349 D tRNA-Ser 759261..759349 Lactobacillus fermentum IFO 3956 6231853 LAF_tRNA34 tRNA LAF_tRNA34 NC_010610.1 1167384 1167468 D tRNA-Leu 1167384..1167468 Lactobacillus fermentum IFO 3956 6232064 LAF_tRNA35 tRNA LAF_tRNA35 NC_010610.1 1282046 1282117 D tRNA-Gln 1282046..1282117 Lactobacillus fermentum IFO 3956 6231908 LAF_tRNA36 tRNA LAF_tRNA36 NC_010610.1 1455355 1455428 D tRNA-Arg 1455355..1455428 Lactobacillus fermentum IFO 3956 6232139 LAF_tRNA37 tRNA LAF_tRNA37 NC_010610.1 1513908 1513978 R tRNA-Gly complement(1513908..1513978) Lactobacillus fermentum IFO 3956 6232659 LAF_tRNA38 tRNA LAF_tRNA38 NC_010610.1 1558861 1558944 R tRNA-Leu complement(1558861..1558944) Lactobacillus fermentum IFO 3956 6232500 LAF_tRNA39 tRNA LAF_tRNA39 NC_010610.1 1558955 1559025 R tRNA-Cys complement(1558955..1559025) Lactobacillus fermentum IFO 3956 6233557 LAF_tRNA40 tRNA LAF_tRNA40 NC_010610.1 1559086 1559160 R tRNA-His complement(1559086..1559160) Lactobacillus fermentum IFO 3956 6233558 LAF_tRNA41 tRNA LAF_tRNA41 NC_010610.1 1559178 1559248 R tRNA-Trp complement(1559178..1559248) Lactobacillus fermentum IFO 3956 6233559 LAF_tRNA42 tRNA LAF_tRNA42 NC_010610.1 1559258 1559340 R tRNA-Tyr complement(1559258..1559340) Lactobacillus fermentum IFO 3956 6233560 LAF_tRNA43 tRNA LAF_tRNA43 NC_010610.1 1559346 1559418 R tRNA-Phe complement(1559346..1559418) Lactobacillus fermentum IFO 3956 6233561 LAF_tRNA44 tRNA LAF_tRNA44 NC_010610.1 1559453 1559525 R tRNA-Val complement(1559453..1559525) Lactobacillus fermentum IFO 3956 6233562 LAF_tRNA45 tRNA LAF_tRNA45 NC_010610.1 1559532 1559603 R tRNA-Glu complement(1559532..1559603) Lactobacillus fermentum IFO 3956 6233563 LAF_tRNA46 tRNA LAF_tRNA46 NC_010610.1 1562961 1563033 R tRNA-Ala complement(1562961..1563033) Lactobacillus fermentum IFO 3956 6232376 LAF_tRNA47 tRNA LAF_tRNA47 NC_010610.1 1563038 1563111 R tRNA-Ile complement(1563038..1563111) Lactobacillus fermentum IFO 3956 6233565 LAF_tRNA48 tRNA LAF_tRNA48 NC_010610.1 1627784 1627856 R tRNA-Arg complement(1627784..1627856) Lactobacillus fermentum IFO 3956 6232553 LAF_tRNA49 tRNA LAF_tRNA49 NC_010610.1 1733710 1733783 R tRNA-Pro complement(1733710..1733783) Lactobacillus fermentum IFO 3956 6232021 LAF_tRNA50 tRNA LAF_tRNA50 NC_010610.1 1733789 1733862 R tRNA-Arg complement(1733789..1733862) Lactobacillus fermentum IFO 3956 6233568 LAF_tRNA51 tRNA LAF_tRNA51 NC_010610.1 1733872 1733943 R tRNA-Gly complement(1733872..1733943) Lactobacillus fermentum IFO 3956 6233569 LAF_tRNA52 tRNA LAF_tRNA52 NC_010610.1 1734052 1734134 R tRNA-Leu complement(1734052..1734134) Lactobacillus fermentum IFO 3956 6233570 LAF_tRNA53 tRNA LAF_tRNA53 NC_010610.1 1734186 1734258 R tRNA-Val complement(1734186..1734258) Lactobacillus fermentum IFO 3956 6233571 LAF_tRNA54 tRNA LAF_tRNA54 NC_010610.1 1760193 1760266 R tRNA-Asp complement(1760193..1760266) Lactobacillus fermentum IFO 3956 6233210 LAF_16SrRNA01 rRNA LAF_16SrRNA01 NC_010610.1 169391 170958 D 16S ribosomal RNA 169391..170958 Lactobacillus fermentum IFO 3956 6233415 LAF_23SrRNA01 rRNA LAF_23SrRNA01 NC_010610.1 171159 174078 D 23S ribosomal RNA 171159..174078 Lactobacillus fermentum IFO 3956 6233022 LAF_5SrRNA01 rRNA LAF_5SrRNA01 NC_010610.1 174143 174256 D 5S ribosomal RNA 174143..174256 Lactobacillus fermentum IFO 3956 6232372 LAF_16SrRNA02 rRNA LAF_16SrRNA02 NC_010610.1 193655 195222 D 16S ribosomal RNA 193655..195222 Lactobacillus fermentum IFO 3956 6233432 LAF_23SrRNA02 rRNA LAF_23SrRNA02 NC_010610.1 195423 198342 D 23S ribosomal RNA 195423..198342 Lactobacillus fermentum IFO 3956 6233023 LAF_5SrRNA02 rRNA LAF_5SrRNA02 NC_010610.1 198407 198520 D 5S ribosomal RNA 198407..198520 Lactobacillus fermentum IFO 3956 6232373 LAF_16SrRNA03 rRNA LAF_16SrRNA03 NC_010610.1 273501 275068 D 16S ribosomal RNA 273501..275068 Lactobacillus fermentum IFO 3956 6233329 LAF_23SrRNA03 rRNA LAF_23SrRNA03 NC_010610.1 275464 278383 D 23S ribosomal RNA 275464..278383 Lactobacillus fermentum IFO 3956 6232387 LAF_5SrRNA03 rRNA LAF_5SrRNA03 NC_010610.1 278448 278561 D 5S ribosomal RNA 278448..278561 Lactobacillus fermentum IFO 3956 6232374 LAF_16SrRNA04 rRNA LAF_16SrRNA04 NC_010610.1 651358 652925 D 16S ribosomal RNA 651358..652925 Lactobacillus fermentum IFO 3956 6233661 LAF_23SrRNA04 rRNA LAF_23SrRNA04 NC_010610.1 653126 656045 D 23S ribosomal RNA 653126..656045 Lactobacillus fermentum IFO 3956 6233025 LAF_5SrRNA04 rRNA LAF_5SrRNA04 NC_010610.1 656110 656223 D 5S ribosomal RNA 656110..656223 Lactobacillus fermentum IFO 3956 6232375 LAF_5SrRNA05 rRNA LAF_5SrRNA05 NC_010610.1 1559704 1559822 R 5S ribosomal RNA complement(1559704..1559822) Lactobacillus fermentum IFO 3956 6233564 LAF_23SrRNA05 rRNA LAF_23SrRNA05 NC_010610.1 1559887 1562806 R 23S ribosomal RNA complement(1559887..1562806) Lactobacillus fermentum IFO 3956 6232381 LAF_16SrRNA05 rRNA LAF_16SrRNA05 NC_010610.1 1563202 1564769 R 16S ribosomal RNA complement(1563202..1564769) Lactobacillus fermentum IFO 3956 6233566