; retrieve-seq -v -org Lactobacillus_ruminis_ATCC_27782_uid73417 -all -type downstream -feattype CDS -from 0 -to -2 -format wc -nocomment -label id,ctg,reg_left,reg_right,orf_strand -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Lactobacillus_ruminis_ATCC_27782_uid73417/genome/Lactobacillus_ruminis_ATCC_27782_uid73417_stop_codons.wc
; organism      	Lactobacillus_ruminis_ATCC_27782_uid73417
; sequence type 	downstream
; feature type  	cds
; Output format 	wc
; Line width    	60
; relative coordinates
;        from    -2
;        to      0
;        size    3
; Queries       	1862
;
YP_004831271.1|NC_015975.1|1780|1782|D	\TAA\
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YP_004831273.1|NC_015975.1|3067|3069|R	\TGA\
YP_004831274.1|NC_015975.1|3577|3579|D	\TGA\
YP_004831275.1|NC_015975.1|4739|4741|D	\TAG\
YP_004831276.1|NC_015975.1|6736|6738|D	\TAA\
YP_004831277.1|NC_015975.1|9325|9327|D	\TGA\
YP_004831278.1|NC_015975.1|9855|9857|D	\TAA\
YP_004831279.1|NC_015975.1|10438|10440|D	\TAA\
YP_004831280.1|NC_015975.1|10695|10697|D	\TAA\
YP_004831281.1|NC_015975.1|11737|11739|R	\TGA\
YP_004831282.1|NC_015975.1|13761|13763|D	\TAA\
YP_004831283.1|NC_015975.1|16025|16027|D	\TAG\
YP_004831284.1|NC_015975.1|16490|16492|D	\TAG\
YP_004831285.1|NC_015975.1|17921|17923|D	\TGA\
YP_004831286.1|NC_015975.1|18177|18179|R	\TAA\
YP_004831287.1|NC_015975.1|19075|19077|D	\TAA\
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YP_004831292.1|NC_015975.1|21814|21816|R	\TGA\
YP_004831293.1|NC_015975.1|23528|23530|R	\TAA\
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YP_004831297.1|NC_015975.1|29915|29917|D	\TAA\
YP_004831298.1|NC_015975.1|30856|30858|D	\TGA\
YP_004831299.1|NC_015975.1|31388|31390|D	\TGA\
YP_004831300.1|NC_015975.1|32980|32982|D	\TAA\
YP_004831301.1|NC_015975.1|33483|33485|D	\TGA\
YP_004831302.1|NC_015975.1|35003|35005|D	\TAG\
YP_004831303.1|NC_015975.1|37971|37973|D	\TAA\
YP_004831304.1|NC_015975.1|38830|38832|D	\TGA\
YP_004831305.1|NC_015975.1|39262|39264|R	\TAA\
YP_004831306.1|NC_015975.1|41605|41607|D	\TAG\
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YP_004831308.1|NC_015975.1|43342|43344|D	\TGA\
YP_004831309.1|NC_015975.1|43913|43915|D	\TAA\
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YP_004831312.1|NC_015975.1|48637|48639|D	\TGA\
YP_004831313.1|NC_015975.1|49443|49445|D	\TAG\
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YP_004831334.1|NC_015975.1|77355|77357|D	\TGA\
YP_004831335.1|NC_015975.1|77631|77633|R	\TAA\
YP_004831336.1|NC_015975.1|78059|78061|R	\TAA\
YP_004831337.1|NC_015975.1|79323|79325|D	\TAA\
YP_004831338.1|NC_015975.1|80846|80848|D	\TAA\
YP_004831339.1|NC_015975.1|82799|82801|D	\TAA\
YP_004831340.1|NC_015975.1|82941|82943|R	\TAA\
YP_004831341.1|NC_015975.1|83384|83386|R	\TAA\
YP_004831342.1|NC_015975.1|85270|85272|D	\TAA\
YP_004831343.1|NC_015975.1|86625|86627|D	\TAA\
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YP_004831345.1|NC_015975.1|89136|89138|R	\TAG\
YP_004831346.1|NC_015975.1|89670|89672|R	\TAA\
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YP_004831348.1|NC_015975.1|93179|93181|D	\TAA\
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YP_004831350.1|NC_015975.1|96493|96495|D	\TAA\
YP_004831351.1|NC_015975.1|96764|96766|D	\TAA\
YP_004831352.1|NC_015975.1|97458|97460|R	\TAA\
YP_004831353.1|NC_015975.1|98082|98084|R	\TAG\
YP_004831354.1|NC_015975.1|99509|99511|R	\TGA\
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YP_004831356.1|NC_015975.1|102350|102352|D	\TAA\
YP_004831357.1|NC_015975.1|103126|103128|D	\TAA\
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YP_004831359.1|NC_015975.1|106056|106058|D	\TAG\
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YP_004831364.1|NC_015975.1|110723|110725|D	\TGA\
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YP_004831367.1|NC_015975.1|113133|113135|D	\TAG\
YP_004831368.1|NC_015975.1|114211|114213|D	\TAG\
YP_004831369.1|NC_015975.1|115431|115433|D	\TGA\
YP_004831370.1|NC_015975.1|116421|116423|D	\TAA\
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YP_004831372.1|NC_015975.1|118999|119001|D	\TAA\
YP_004831373.1|NC_015975.1|119234|119236|D	\TAA\
YP_004831374.1|NC_015975.1|119844|119846|R	\TAG\
YP_004831375.1|NC_015975.1|120750|120752|R	\TAA\
YP_004831376.1|NC_015975.1|122273|122275|R	\TAA\
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YP_004831380.1|NC_015975.1|128258|128260|D	\TAA\
YP_004831381.1|NC_015975.1|128881|128883|D	\TAG\
YP_004831382.1|NC_015975.1|131100|131102|D	\TGA\
YP_004831383.1|NC_015975.1|132117|132119|D	\TAA\
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YP_004831386.1|NC_015975.1|134025|134027|R	\TAA\
YP_004831387.1|NC_015975.1|134451|134453|R	\TAA\
YP_004831388.1|NC_015975.1|136245|136247|R	\TAA\
YP_004831389.1|NC_015975.1|139649|139651|R	\TAG\
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YP_004831391.1|NC_015975.1|144374|144376|R	\TAA\
YP_004831392.1|NC_015975.1|145407|145409|R	\TGA\
YP_004831393.1|NC_015975.1|147268|147270|R	\TAG\
YP_004831394.1|NC_015975.1|150229|150231|D	\TAG\
YP_004831395.1|NC_015975.1|151114|151116|D	\TAA\
YP_004831396.1|NC_015975.1|151151|151153|R	\TAA\
YP_004831397.1|NC_015975.1|152452|152454|R	\TGA\
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YP_004831403.1|NC_015975.1|160896|160898|D	\TAA\
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YP_004831405.1|NC_015975.1|163188|163190|D	\TAA\
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YP_004831408.1|NC_015975.1|164888|164890|R	\TGA\
YP_004831409.1|NC_015975.1|166303|166305|R	\TAA\
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YP_004831411.1|NC_015975.1|170241|170243|D	\TGA\
YP_004831412.1|NC_015975.1|170712|170714|D	\TAA\
YP_004831413.1|NC_015975.1|171526|171528|D	\TAA\
YP_004831414.1|NC_015975.1|172343|172345|D	\TAA\
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YP_004831416.1|NC_015975.1|174704|174706|D	\TAG\
YP_004831417.1|NC_015975.1|175082|175084|D	\TAG\
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YP_004831420.1|NC_015975.1|177124|177126|D	\TGA\
YP_004831421.1|NC_015975.1|178402|178404|D	\TGA\
YP_004831422.1|NC_015975.1|179355|179357|D	\TAA\
YP_004831423.1|NC_015975.1|180199|180201|D	\TAA\
YP_004831424.1|NC_015975.1|182138|182140|D	\TGA\
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YP_004831427.1|NC_015975.1|183586|183588|R	\TAA\
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YP_004831445.1|NC_015975.1|204332|204334|R	\TGA\
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YP_004831447.1|NC_015975.1|205812|205814|D	\TAA\
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YP_004831452.1|NC_015975.1|211238|211240|D	\TAA\
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YP_004831455.1|NC_015975.1|214409|214411|D	\TAG\
YP_004831456.1|NC_015975.1|215389|215391|D	\TAA\
YP_004831457.1|NC_015975.1|215551|215553|R	\TAG\
YP_004831458.1|NC_015975.1|217128|217130|R	\TAA\
YP_004831459.1|NC_015975.1|219347|219349|D	\TAA\
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YP_004831462.1|NC_015975.1|222505|222507|D	\TGA\
YP_004831463.1|NC_015975.1|223762|223764|D	\TAG\
YP_004831464.1|NC_015975.1|224599|224601|D	\TAG\
YP_004831465.1|NC_015975.1|225211|225213|D	\TGA\
YP_004831466.1|NC_015975.1|226110|226112|D	\TAA\
YP_004831467.1|NC_015975.1|227185|227187|D	\TGA\
YP_004831468.1|NC_015975.1|227898|227900|D	\TGA\
YP_004831469.1|NC_015975.1|228711|228713|D	\TAA\
YP_004831470.1|NC_015975.1|229904|229906|D	\TAA\
YP_004831471.1|NC_015975.1|231344|231346|D	\TAA\
YP_004831472.1|NC_015975.1|231635|231637|D	\TAA\
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YP_004831474.1|NC_015975.1|235717|235719|R	\TGA\
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YP_004831476.1|NC_015975.1|237574|237576|D	\TGA\
YP_004831477.1|NC_015975.1|238959|238961|D	\TAA\
YP_004831478.1|NC_015975.1|239900|239902|D	\TAG\
YP_004831479.1|NC_015975.1|240245|240247|D	\TGA\
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YP_004831484.1|NC_015975.1|243689|243691|D	\TAG\
YP_004831485.1|NC_015975.1|246063|246065|D	\TAA\
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YP_004831489.1|NC_015975.1|249983|249985|D	\TGA\
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YP_004831491.1|NC_015975.1|252700|252702|D	\TGA\
YP_004831492.1|NC_015975.1|253424|253426|D	\TGA\
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YP_004831494.1|NC_015975.1|255563|255565|D	\TAA\
YP_004831495.1|NC_015975.1|256628|256630|D	\TAG\
YP_004831496.1|NC_015975.1|257652|257654|D	\TGA\
YP_004831497.1|NC_015975.1|258379|258381|D	\TAG\
YP_004831498.1|NC_015975.1|258732|258734|D	\TAA\
YP_004831499.1|NC_015975.1|260073|260075|D	\TGA\
YP_004831500.1|NC_015975.1|260822|260824|D	\TGA\
YP_004831501.1|NC_015975.1|261289|261291|D	\TAG\
YP_004831502.1|NC_015975.1|263571|263573|R	\TAA\
YP_004831503.1|NC_015975.1|264470|264472|R	\TGA\
YP_004831504.1|NC_015975.1|265498|265500|R	\TAA\
YP_004831505.1|NC_015975.1|266563|266565|R	\TAG\
YP_004831506.1|NC_015975.1|266937|266939|R	\TGA\
YP_004831507.1|NC_015975.1|268819|268821|D	\TAG\
YP_004831508.1|NC_015975.1|269453|269455|D	\TGA\
YP_004831509.1|NC_015975.1|271278|271280|D	\TAG\
YP_004831510.1|NC_015975.1|273186|273188|D	\TAA\
YP_004831511.1|NC_015975.1|273871|273873|D	\TGA\
YP_004831512.1|NC_015975.1|281223|281225|D	\TGA\
YP_004831513.1|NC_015975.1|283754|283756|D	\TAG\
YP_004831514.1|NC_015975.1|284264|284266|D	\TGA\
YP_004831515.1|NC_015975.1|288099|288101|D	\TAA\
YP_004831516.1|NC_015975.1|291809|291811|D	\TAA\
YP_004831517.1|NC_015975.1|291881|291883|R	\TAG\
YP_004831518.1|NC_015975.1|292823|292825|R	\TAA\
YP_004831519.1|NC_015975.1|294223|294225|D	\TAA\
YP_004831520.1|NC_015975.1|294749|294751|D	\TAA\
YP_004831521.1|NC_015975.1|296937|296939|D	\TAA\
YP_004831522.1|NC_015975.1|297363|297365|D	\TAA\
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YP_004831640.1|NC_015975.1|416979|416981|D	\TAA\
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YP_004831654.1|NC_015975.1|430578|430580|D	\TGA\
YP_004831655.1|NC_015975.1|430782|430784|D	\TAA\
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YP_004831662.1|NC_015975.1|436827|436829|D	\TAA\
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YP_004831664.1|NC_015975.1|440190|440192|D	\TAA\
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YP_004831671.1|NC_015975.1|459546|459548|D	\TAG\
YP_004831672.1|NC_015975.1|460997|460999|D	\TAA\
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YP_004831680.1|NC_015975.1|470272|470274|D	\TAA\
YP_004831681.1|NC_015975.1|471214|471216|D	\TAA\
YP_004831682.1|NC_015975.1|471662|471664|D	\TGA\
YP_004831683.1|NC_015975.1|472164|472166|D	\TAA\
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YP_004831685.1|NC_015975.1|476049|476051|D	\TAG\
YP_004831686.1|NC_015975.1|477279|477281|D	\TGA\
YP_004831687.1|NC_015975.1|478178|478180|D	\TAA\
YP_004831688.1|NC_015975.1|478460|478462|R	\TAA\
YP_004831689.1|NC_015975.1|480579|480581|D	\TGA\
YP_004831690.1|NC_015975.1|481279|481281|D	\TGA\
YP_004831691.1|NC_015975.1|482007|482009|D	\TAA\
YP_004831692.1|NC_015975.1|484136|484138|D	\TAA\
YP_004831693.1|NC_015975.1|485018|485020|D	\TAA\
YP_004831694.1|NC_015975.1|485571|485573|D	\TGA\
YP_004831695.1|NC_015975.1|486463|486465|D	\TAA\
YP_004831696.1|NC_015975.1|486806|486808|D	\TAA\
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YP_004831699.1|NC_015975.1|489442|489444|D	\TAA\
YP_004831700.1|NC_015975.1|489750|489752|R	\TAA\
YP_004831701.1|NC_015975.1|490669|490671|R	\TAG\
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YP_004831705.1|NC_015975.1|497445|497447|D	\TAA\
YP_004831706.1|NC_015975.1|498895|498897|D	\TAA\
YP_004831707.1|NC_015975.1|499957|499959|D	\TGA\
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YP_004831709.1|NC_015975.1|502228|502230|R	\TAA\
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YP_004831713.1|NC_015975.1|507036|507038|D	\TAG\
YP_004831714.1|NC_015975.1|508121|508123|D	\TGA\
YP_004831715.1|NC_015975.1|510595|510597|R	\TGA\
YP_004831716.1|NC_015975.1|512830|512832|D	\TAG\
YP_004831717.1|NC_015975.1|513584|513586|D	\TAG\
YP_004831718.1|NC_015975.1|514537|514539|D	\TGA\
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YP_004831725.1|NC_015975.1|523026|523028|D	\TAG\
YP_004831726.1|NC_015975.1|524364|524366|D	\TAA\
YP_004831727.1|NC_015975.1|524712|524714|D	\TAA\
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YP_004831729.1|NC_015975.1|530195|530197|D	\TAA\
YP_004831730.1|NC_015975.1|532585|532587|D	\TAA\
YP_004831731.1|NC_015975.1|533598|533600|D	\TGA\
YP_004831732.1|NC_015975.1|534672|534674|D	\TAA\
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YP_004831735.1|NC_015975.1|537899|537901|D	\TGA\
YP_004831736.1|NC_015975.1|538920|538922|D	\TAG\
YP_004831737.1|NC_015975.1|539620|539622|D	\TGA\
YP_004831738.1|NC_015975.1|540453|540455|D	\TAG\
YP_004831739.1|NC_015975.1|541742|541744|D	\TAA\
YP_004831740.1|NC_015975.1|543022|543024|D	\TAA\
YP_004831741.1|NC_015975.1|544515|544517|D	\TAA\
YP_004831742.1|NC_015975.1|547256|547258|D	\TAG\
YP_004831743.1|NC_015975.1|549283|549285|D	\TGA\
YP_004831744.1|NC_015975.1|550443|550445|D	\TAA\
YP_004831745.1|NC_015975.1|550831|550833|D	\TGA\
YP_004831746.1|NC_015975.1|552297|552299|D	\TAA\
YP_004831747.1|NC_015975.1|553730|553732|D	\TAA\
YP_004831748.1|NC_015975.1|554863|554865|D	\TGA\
YP_004831749.1|NC_015975.1|557297|557299|D	\TGA\
YP_004831750.1|NC_015975.1|557570|557572|D	\TAG\
YP_004831751.1|NC_015975.1|558240|558242|D	\TGA\
YP_004831752.1|NC_015975.1|559060|559062|D	\TGA\
YP_004831753.1|NC_015975.1|560521|560523|D	\TAG\
YP_004831754.1|NC_015975.1|560826|560828|R	\TAA\
YP_004831755.1|NC_015975.1|562395|562397|R	\TAG\
YP_004831756.1|NC_015975.1|562816|562818|R	\TGA\
YP_004831757.1|NC_015975.1|564259|564261|D	\TAG\
YP_004831758.1|NC_015975.1|564774|564776|D	\TGA\
YP_004831759.1|NC_015975.1|568558|568560|D	\TAG\
YP_004831760.1|NC_015975.1|571616|571618|D	\TAA\
YP_004831761.1|NC_015975.1|572097|572099|D	\TAA\
YP_004831762.1|NC_015975.1|572675|572677|R	\TAA\
YP_004831763.1|NC_015975.1|573414|573416|R	\TAA\
YP_004831764.1|NC_015975.1|575680|575682|D	\TGA\
YP_004831765.1|NC_015975.1|576239|576241|D	\TAA\
YP_004831766.1|NC_015975.1|576457|576459|D	\TGA\
YP_004831767.1|NC_015975.1|578760|578762|D	\TAG\
YP_004831768.1|NC_015975.1|580101|580103|D	\TAA\
YP_004831769.1|NC_015975.1|581431|581433|D	\TAA\
YP_004831770.1|NC_015975.1|582326|582328|D	\TAA\
YP_004831771.1|NC_015975.1|582937|582939|D	\TAG\
YP_004831772.1|NC_015975.1|586230|586232|D	\TAA\
YP_004831773.1|NC_015975.1|587027|587029|D	\TAG\
YP_004831774.1|NC_015975.1|588087|588089|D	\TGA\
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YP_004831985.1|NC_015975.1|817967|817969|D	\TAA\
YP_004831986.1|NC_015975.1|819042|819044|D	\TGA\
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YP_004831991.1|NC_015975.1|824331|824333|D	\TGA\
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YP_004832000.1|NC_015975.1|834458|834460|D	\TAA\
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YP_004832005.1|NC_015975.1|839533|839535|D	\TAA\
YP_004832006.1|NC_015975.1|840915|840917|D	\TAA\
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YP_004832008.1|NC_015975.1|844073|844075|D	\TAA\
YP_004832009.1|NC_015975.1|844466|844468|D	\TGA\
YP_004832010.1|NC_015975.1|846098|846100|D	\TGA\
YP_004832011.1|NC_015975.1|846651|846653|D	\TGA\
YP_004832012.1|NC_015975.1|847665|847667|D	\TGA\
YP_004832013.1|NC_015975.1|848466|848468|D	\TGA\
YP_004832014.1|NC_015975.1|849095|849097|D	\TAA\
YP_004832015.1|NC_015975.1|850272|850274|D	\TGA\
YP_004832016.1|NC_015975.1|851044|851046|D	\TAA\
YP_004832017.1|NC_015975.1|851581|851583|R	\TGA\
YP_004832018.1|NC_015975.1|853050|853052|R	\TAA\
YP_004832019.1|NC_015975.1|855283|855285|D	\TAA\
YP_004832020.1|NC_015975.1|855418|855420|R	\TAA\
YP_004832021.1|NC_015975.1|856970|856972|D	\TGA\
YP_004832022.1|NC_015975.1|858500|858502|D	\TAA\
YP_004832023.1|NC_015975.1|858569|858571|R	\TAG\
YP_004832024.1|NC_015975.1|859420|859422|R	\TGA\
YP_004832025.1|NC_015975.1|860393|860395|D	\TGA\
YP_004832026.1|NC_015975.1|862350|862352|D	\TAG\
YP_004832027.1|NC_015975.1|863525|863527|D	\TAA\
YP_004832028.1|NC_015975.1|863906|863908|D	\TGA\
YP_004832029.1|NC_015975.1|865032|865034|D	\TAG\
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YP_004833031.1|NC_015975.1|1924462|1924464|R	\TAA\
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YP_004833042.1|NC_015975.1|1940629|1940631|R	\TAA\
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YP_004833065.1|NC_015975.1|1979533|1979535|D	\TAA\
YP_004833066.1|NC_015975.1|1981773|1981775|D	\TGA\
YP_004833067.1|NC_015975.1|1982080|1982082|D	\TAA\
YP_004833068.1|NC_015975.1|1982128|1982130|R	\TAG\
YP_004833069.1|NC_015975.1|1982750|1982752|R	\TAA\
YP_004833070.1|NC_015975.1|1984081|1984083|R	\TAA\
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YP_004833072.1|NC_015975.1|1987180|1987182|R	\TAG\
YP_004833073.1|NC_015975.1|1988649|1988651|R	\TAA\
YP_004833074.1|NC_015975.1|1989605|1989607|R	\TGA\
YP_004833075.1|NC_015975.1|1990696|1990698|R	\TAG\
YP_004833076.1|NC_015975.1|1992332|1992334|R	\TAA\
YP_004833077.1|NC_015975.1|1994550|1994552|D	\TAG\
YP_004833078.1|NC_015975.1|1995053|1995055|R	\TGA\
YP_004833079.1|NC_015975.1|1998585|1998587|R	\TAA\
YP_004833080.1|NC_015975.1|2000345|2000347|R	\TGA\
YP_004833081.1|NC_015975.1|2002504|2002506|D	\TAA\
YP_004833082.1|NC_015975.1|2003746|2003748|R	\TAG\
YP_004833083.1|NC_015975.1|2004558|2004560|D	\TGA\
YP_004833084.1|NC_015975.1|2004645|2004647|R	\TAA\
YP_004833085.1|NC_015975.1|2004944|2004946|R	\TGA\
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YP_004833087.1|NC_015975.1|2006555|2006557|R	\TAA\
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YP_004833089.1|NC_015975.1|2008699|2008701|D	\TAA\
YP_004833090.1|NC_015975.1|2009359|2009361|D	\TGA\
YP_004833091.1|NC_015975.1|2009481|2009483|R	\TAA\
YP_004833092.1|NC_015975.1|2009984|2009986|R	\TAA\
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YP_004833132.1|NC_015975.1|2065911|2065913|R	\TAA\

; Host name	nic24
; Job started	2012-05-05.025044
; Job done	2012-05-05.025044
; Seconds	0.4
;	user	0.4
;	system	0.09
;	cuser	0
;	csystem	0