-- dump date 20120504_151251 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_163738.1 56707108 3190536 complement(67..2127) 1 NC_006529.1 ORF1; putative nickase 2127 3190536 pSF118-20_01 Lactobacillus salivarius UCC118 putative nickase YP_163738.1 67 R 362948 CDS YP_163739.1 56707109 3190530 2399..2611 1 NC_006529.1 ORF2; hypothetical protein 2611 3190530 pSF118-20_02 Lactobacillus salivarius UCC118 hypothetical protein YP_163739.1 2399 D 362948 CDS YP_163740.1 56707110 3190528 2628..2906 1 NC_006529.1 ORF3; hypothetical protein 2906 3190528 pSF118-20_03 Lactobacillus salivarius UCC118 hypothetical protein YP_163740.1 2628 D 362948 CDS YP_163741.1 56707111 3190527 complement(3038..3787) 1 NC_006529.1 ORF4; hypothetical protein 3787 3190527 pSF118-20_04 Lactobacillus salivarius UCC118 hypothetical protein YP_163741.1 3038 R 362948 CDS YP_163742.1 56707112 3190533 complement(3837..4028) 1 NC_006529.1 ORF5; hypothetical protein 4028 3190533 pSF118-20_05 Lactobacillus salivarius UCC118 hypothetical protein YP_163742.1 3837 R 362948 CDS YP_163743.1 56707113 3190529 complement(4179..5282) 1 NC_006529.1 RepA; putative replication initiation protein 5282 repA 3190529 repA Lactobacillus salivarius UCC118 putative replication initiation protein YP_163743.1 4179 R 362948 CDS YP_163744.1 56707114 3190520 complement(5871..6122) 1 NC_006529.1 ORF7; hypothetical protein 6122 3190520 pSF118-20_07 Lactobacillus salivarius UCC118 hypothetical protein YP_163744.1 5871 R 362948 CDS YP_163745.1 56707115 3190532 complement(6126..6935) 1 NC_006529.1 ORF8; putative plasmid partition protein 6935 3190532 pSF118-20_08 Lactobacillus salivarius UCC118 putative plasmid partition protein YP_163745.1 6126 R 362948 CDS YP_163746.1 56707116 3190525 complement(7011..7583) 1 NC_006529.1 ORF9; putative resolvase 7583 3190525 pSF118-20_09 Lactobacillus salivarius UCC118 putative resolvase YP_163746.1 7011 R 362948 CDS YP_163747.1 56707117 3190522 8112..9443 1 NC_006529.1 ORF10; putative mercury(II) reductase 9443 3190522 pSF118-20_10 Lactobacillus salivarius UCC118 putative mercury(II) reductase YP_163747.1 8112 D 362948 CDS YP_163748.1 56707118 3190523 9714..10343 1 NC_006529.1 ORF11; hypothetical protein 10343 3190523 pSF118-20_11 Lactobacillus salivarius UCC118 hypothetical protein YP_163748.1 9714 D 362948 CDS YP_163749.1 56707119 3190545 10872..11432 1 NC_006529.1 ORF12; hypothetical protein 11432 3190545 pSF118-20_12 Lactobacillus salivarius UCC118 hypothetical protein YP_163749.1 10872 D 362948 CDS YP_163750.1 56707120 3190546 11444..11629 1 NC_006529.1 ORF13; hypothetical protein 11629 3190546 pSF118-20_13 Lactobacillus salivarius UCC118 hypothetical protein YP_163750.1 11444 D 362948 CDS YP_163751.1 56707121 3190531 11657..12199 1 NC_006529.1 Gls14; similar to Gls24 from Enterococcus faecalis; putative general stress-like protein 12199 gls14 3190531 gls14 Lactobacillus salivarius UCC118 putative general stress-like protein YP_163751.1 11657 D 362948 CDS YP_163752.1 56707122 3190526 12214..12465 1 NC_006529.1 Gls15; similar to GlsB from Enterococcus faecalis; putative stress-like protein 12465 3190526 pSF118-20_15 Lactobacillus salivarius UCC118 putative stress-like protein YP_163752.1 12214 D 362948 CDS YP_163753.1 56707123 3190544 12477..12617 1 NC_006529.1 ORF16; hypothetical protein 12617 3190544 pSF118-20_16 Lactobacillus salivarius UCC118 hypothetical protein YP_163753.1 12477 D 362948 CDS YP_163754.1 56707124 3190543 12815..13030 1 NC_006529.1 ORF17; hypothetical protein 13030 3190543 pSF118-20_17 Lactobacillus salivarius UCC118 hypothetical protein YP_163754.1 12815 D 362948 CDS YP_163755.1 56707125 3190542 complement(13518..14090) 1 NC_006529.1 ORF18; hypothetical protein 14090 3190542 pSF118-20_18 Lactobacillus salivarius UCC118 hypothetical protein YP_163755.1 13518 R 362948 CDS YP_163756.1 56707126 3190541 complement(14418..15797) 1 NC_006529.1 ORF19; putative transposase 15797 3190541 pSF118-20_19 Lactobacillus salivarius UCC118 putative transposase YP_163756.1 14418 R 362948 CDS YP_163757.1 56707127 3190524 16058..16318 1 NC_006529.1 ORF20; putative UV-resistance-like protein 16318 3190524 pSF118-20_20 Lactobacillus salivarius UCC118 putative UV-resistance-like protein YP_163757.1 16058 D 362948 CDS YP_163758.1 56707128 3190521 16455..16766 1 NC_006529.1 ORF21; hypothetical protein 16766 3190521 pSF118-20_21 Lactobacillus salivarius UCC118 hypothetical protein YP_163758.1 16455 D 362948 CDS YP_163759.1 56707129 3190534 16759..17211 1 NC_006529.1 ORF22; hypothetical protein 17211 3190534 pSF118-20_22 Lactobacillus salivarius UCC118 hypothetical protein YP_163759.1 16759 D 362948 CDS YP_163760.1 56707130 3190540 17419..17595 1 NC_006529.1 ORF23; hypothetical protein 17595 3190540 pSF118-20_23 Lactobacillus salivarius UCC118 hypothetical protein YP_163760.1 17419 D 362948 CDS YP_163761.1 56707131 3190539 complement(17833..18090) 1 NC_006529.1 ORF24; hypothetical protein 18090 3190539 pSF118-20_24 Lactobacillus salivarius UCC118 hypothetical protein YP_163761.1 17833 R 362948 CDS YP_163762.1 56707132 3190538 18177..18440 1 NC_006529.1 ORF25; probable suppressor of the inhibitory function of PemK; putative PemI-like protein 18440 3190538 pSF118-20_25 Lactobacillus salivarius UCC118 putative PemI-like protein YP_163762.1 18177 D 362948 CDS YP_163763.1 56707133 3190537 18434..18778 1 NC_006529.1 ORF26; probable growth inhibitor; putative PemK-like protein 18778 3190537 pSF118-20_26 Lactobacillus salivarius UCC118 putative PemK-like protein YP_163763.1 18434 D 362948 CDS YP_163764.1 56707134 3190535 19002..20222 1 NC_006529.1 ORF27; putative transposase 20222 3190535 pSF118-20_27 Lactobacillus salivarius UCC118 putative transposase YP_163764.1 19002 D 362948 CDS YP_163765.1 56707186 3190519 complement(join(43479..44013,1..905)) 1 NC_006530.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 905 3190519 LSL_1987 Lactobacillus salivarius UCC118 nicotinate phosphoribosyltransferase YP_163765.1 43479 R 362948 CDS YP_163766.1 56707136 3190568 complement(1021..1725) 1 NC_006530.1 MutT/Nudix-like protein 1725 3190568 LSL_1988 Lactobacillus salivarius UCC118 MutT/Nudix-like protein YP_163766.1 1021 R 362948 CDS YP_163767.1 56707137 3190567 complement(1948..2256) 1 NC_006530.1 TetR family transcriptional regulator 2256 3190567 LSL_1989 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_163767.1 1948 R 362948 CDS YP_163769.1 56707139 3190565 3226..4143 1 NC_006530.1 hypothetical protein 4143 3190565 LSL_1991 Lactobacillus salivarius UCC118 hypothetical protein YP_163769.1 3226 D 362948 CDS YP_163770.1 56707140 3190581 4156..4659 1 NC_006530.1 hypothetical protein 4659 3190581 LSL_1992 Lactobacillus salivarius UCC118 hypothetical protein YP_163770.1 4156 D 362948 CDS YP_163772.1 56707142 3190563 5876..6175 1 NC_006530.1 antitoxin of toxin-antitoxin stability system 6175 3190563 LSL_1994 Lactobacillus salivarius UCC118 antitoxin of toxin-antitoxin stability system YP_163772.1 5876 D 362948 CDS YP_163773.1 56707143 3190562 6172..6507 1 NC_006530.1 toxin of toxin-antitoxin stability system 6507 3190562 LSL_1995 Lactobacillus salivarius UCC118 toxin of toxin-antitoxin stability system YP_163773.1 6172 D 362948 CDS YP_163774.1 56707144 3190561 complement(6564..6872) 1 NC_006530.1 hypothetical protein 6872 3190561 LSL_1996 Lactobacillus salivarius UCC118 hypothetical protein YP_163774.1 6564 R 362948 CDS YP_163775.1 56707145 3190560 complement(6874..7161) 1 NC_006530.1 hypothetical protein 7161 3190560 LSL_1997 Lactobacillus salivarius UCC118 hypothetical protein YP_163775.1 6874 R 362948 CDS YP_163776.1 56707146 3190559 7288..8073 1 NC_006530.1 putative plasmid partition protein 8073 3190559 LSL_1998 Lactobacillus salivarius UCC118 putative plasmid partition protein YP_163776.1 7288 D 362948 CDS YP_163777.1 56707147 3190578 8152..8355 1 NC_006530.1 hypothetical protein 8355 3190578 LSL_1999 Lactobacillus salivarius UCC118 hypothetical protein YP_163777.1 8152 D 362948 CDS YP_163778.1 56707148 3190571 9165..10259 1 NC_006530.1 RepA; plasmid replication initiation protein 10259 repA 3190571 repA Lactobacillus salivarius UCC118 plasmid replication initiation protein YP_163778.1 9165 D 362948 CDS YP_163779.1 56707149 3190577 10429..10626 1 NC_006530.1 hypothetical protein 10626 3190577 LSL_2001 Lactobacillus salivarius UCC118 hypothetical protein YP_163779.1 10429 D 362948 CDS YP_163780.1 56707150 3190558 10677..11423 1 NC_006530.1 hypothetical protein 11423 3190558 LSL_2002 Lactobacillus salivarius UCC118 hypothetical protein YP_163780.1 10677 D 362948 CDS YP_163781.1 56707151 3190557 complement(11546..11824) 1 NC_006530.1 hypothetical protein 11824 3190557 LSL_2003 Lactobacillus salivarius UCC118 hypothetical protein YP_163781.1 11546 R 362948 CDS YP_163782.1 56707152 3190576 complement(11847..12056) 1 NC_006530.1 hypothetical protein 12056 3190576 LSL_2004 Lactobacillus salivarius UCC118 hypothetical protein YP_163782.1 11847 R 362948 CDS YP_163783.1 56707153 3190556 12326..14386 1 NC_006530.1 nickase 14386 3190556 LSL_2005 Lactobacillus salivarius UCC118 nickase YP_163783.1 12326 D 362948 CDS YP_163784.1 56707154 3190555 14823..15002 1 NC_006530.1 hypothetical protein 15002 3190555 LSL_2006 Lactobacillus salivarius UCC118 hypothetical protein YP_163784.1 14823 D 362948 CDS YP_163785.1 56707155 3190554 complement(15124..15330) 1 NC_006530.1 cinnamoyl ester hydrolase-like protein 15330 3190554 LSL_2007 Lactobacillus salivarius UCC118 cinnamoyl ester hydrolase-like protein YP_163785.1 15124 R 362948 CDS YP_163786.1 56707156 3190553 15640..16662 1 NC_006530.1 quinone oxidoreductase 16662 3190553 LSL_2008 Lactobacillus salivarius UCC118 quinone oxidoreductase YP_163786.1 15640 D 362948 CDS YP_163787.1 56707157 3190552 16666..17346 1 NC_006530.1 hypothetical protein 17346 3190552 LSL_2009 Lactobacillus salivarius UCC118 hypothetical protein YP_163787.1 16666 D 362948 CDS YP_163788.1 56707158 3190575 complement(17359..17679) 1 NC_006530.1 putative transposase 17679 3190575 LSL_2010 Lactobacillus salivarius UCC118 putative transposase YP_163788.1 17359 R 362948 CDS YP_163789.1 56707159 3190572 18132..18998 1 NC_006530.1 ABC transporter ATP-binding subunit 18998 3190572 LSL_2011 Lactobacillus salivarius UCC118 ABC transporter ATP-binding subunit YP_163789.1 18132 D 362948 CDS YP_163790.1 56707160 3190551 19000..19860 1 NC_006530.1 membrane permease 19860 3190551 LSL_2012 Lactobacillus salivarius UCC118 membrane permease YP_163790.1 19000 D 362948 CDS YP_163791.1 56707161 3190550 19866..20318 1 NC_006530.1 putative transcriptional regulator 20318 3190550 LSL_2013 Lactobacillus salivarius UCC118 putative transcriptional regulator YP_163791.1 19866 D 362948 CDS YP_163792.1 56707162 3190549 20332..20736 1 NC_006530.1 hypothetical protein 20736 3190549 LSL_2014 Lactobacillus salivarius UCC118 hypothetical protein YP_163792.1 20332 D 362948 CDS YP_163795.1 56707165 3190516 22472..22597 1 NC_006530.1 hypothetical protein 22597 3190516 LSL_2017 Lactobacillus salivarius UCC118 hypothetical protein YP_163795.1 22472 D 362948 CDS YP_163796.1 56707166 3190585 complement(22721..23173) 1 NC_006530.1 hypothetical protein 23173 3190585 LSL_2018 Lactobacillus salivarius UCC118 hypothetical protein YP_163796.1 22721 R 362948 CDS YP_163797.1 56707167 3190547 complement(23166..23393) 1 NC_006530.1 hypothetical protein 23393 3190547 LSL_2019 Lactobacillus salivarius UCC118 hypothetical protein YP_163797.1 23166 R 362948 CDS YP_163798.1 56707168 3190508 23923..25272 1 NC_006530.1 pyridine nucleotide-disulphide oxidoreductase family protein 25272 3190508 LSL_2020 Lactobacillus salivarius UCC118 pyridine nucleotide-disulphide oxidoreductase family protein YP_163798.1 23923 D 362948 CDS YP_163799.1 56707169 3190574 28418..29020 1 NC_006530.1 putative membrane associated transport subunit 29020 3190574 LSL_2021 Lactobacillus salivarius UCC118 putative membrane associated transport subunit YP_163799.1 28418 D 362948 CDS YP_163800.1 56707170 3190584 29020..29814 1 NC_006530.1 transport protein CbiQ 29814 3190584 LSL_2022 Lactobacillus salivarius UCC118 transport protein CbiQ YP_163800.1 29020 D 362948 CDS YP_163801.1 56707171 3190583 29787..30344 1 NC_006530.1 cobalt transport protein CbiQ 30344 3190583 LSL_2023 Lactobacillus salivarius UCC118 cobalt transport protein CbiQ YP_163801.1 29787 D 362948 CDS YP_163802.1 56707172 3190515 30603..31418 1 NC_006530.1 cobalt transport ATP-binding protein CbiO 31418 3190515 LSL_2024 Lactobacillus salivarius UCC118 cobalt transport ATP-binding protein CbiO YP_163802.1 30603 D 362948 CDS YP_163803.1 56707173 3190514 31791..31949 1 NC_006530.1 hypothetical protein 31949 3190514 LSL_2025 Lactobacillus salivarius UCC118 hypothetical protein YP_163803.1 31791 D 362948 CDS YP_163804.1 56707174 3190570 32695..34281 1 NC_006530.1 ABC transporter permease and substrate binding protein; glycine betaine transporter 34281 3190570 LSL_2026 Lactobacillus salivarius UCC118 glycine betaine transporter YP_163804.1 32695 D 362948 CDS YP_163805.1 56707175 3190569 34281..35252 1 NC_006530.1 ATP-binding protein; glycine betaine transporter 35252 3190569 LSL_2027 Lactobacillus salivarius UCC118 glycine betaine transporter YP_163805.1 34281 D 362948 CDS YP_163806.1 56707176 3190513 35348..36679 1 NC_006530.1 glutathione reductase 36679 3190513 LSL_2028 Lactobacillus salivarius UCC118 glutathione reductase YP_163806.1 35348 D 362948 CDS YP_163807.1 56707177 3190573 37363..37947 1 NC_006530.1 resolvase 37947 3190573 LSL_2029 Lactobacillus salivarius UCC118 resolvase YP_163807.1 37363 D 362948 CDS YP_163808.1 56707178 3190579 38072..38395 1 NC_006530.1 hypothetical protein 38395 3190579 LSL_2030 Lactobacillus salivarius UCC118 hypothetical protein YP_163808.1 38072 D 362948 CDS YP_163809.1 56707179 3190580 complement(38271..39107) 1 NC_006530.1 hypothetical protein 39107 3190580 LSL_2031 Lactobacillus salivarius UCC118 hypothetical protein YP_163809.1 38271 R 362948 CDS YP_163810.1 56707180 3190512 complement(39222..39392) 1 NC_006530.1 similar to Escherichia coli DinJ damage inducible protein; DinJ damage inducible protein-like protein 39392 3190512 LSL_2032 Lactobacillus salivarius UCC118 DinJ damage inducible protein-like protein YP_163810.1 39222 R 362948 CDS YP_163811.1 56707181 3190510 39582..39869 1 NC_006530.1 hypothetical protein 39869 3190510 LSL_2033 Lactobacillus salivarius UCC118 hypothetical protein YP_163811.1 39582 D 362948 CDS YP_163812.1 56707182 3190509 complement(40441..41274) 1 NC_006530.1 hypothetical protein 41274 3190509 LSL_2034 Lactobacillus salivarius UCC118 hypothetical protein YP_163812.1 40441 R 362948 CDS YP_163813.1 56707183 3190548 complement(41276..41566) 1 NC_006530.1 hypothetical protein 41566 3190548 LSL_2035 Lactobacillus salivarius UCC118 hypothetical protein YP_163813.1 41276 R 362948 CDS YP_163814.1 56707184 3190582 complement(41568..41816) 1 NC_006530.1 hypothetical protein 41816 3190582 LSL_2036 Lactobacillus salivarius UCC118 hypothetical protein YP_163814.1 41568 R 362948 CDS YP_163815.1 56707185 3190518 complement(41977..42714) 1 NC_006530.1 hypothetical protein 42714 3190518 LSL_2037 Lactobacillus salivarius UCC118 hypothetical protein YP_163815.1 41977 R 362948 CDS YP_534907.1 90960991 3978264 1..1365 1 NC_007929.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1365 dnaA 3978264 dnaA Lactobacillus salivarius UCC118 chromosomal replication initiation protein YP_534907.1 1 D 364254 CDS YP_534908.1 90960992 3978265 1532..2671 1 NC_007929.1 COG0592 [L] DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III, beta chain 2671 dnaN 3978265 dnaN Lactobacillus salivarius UCC118 DNA polymerase III, beta chain YP_534908.1 1532 D 364254 CDS YP_534909.1 90960993 3978266 3088..3309 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 3309 3978266 LSL_0003 Lactobacillus salivarius UCC118 hypothetical protein YP_534909.1 3088 D 364254 CDS YP_534910.1 90960994 3978267 3309..4448 1 NC_007929.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4448 recF 3978267 recF Lactobacillus salivarius UCC118 recombination protein F YP_534910.1 3309 D 364254 CDS YP_534911.1 90960995 3978246 4451..6409 1 NC_007929.1 COG0187 [L] type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 6409 gyrB 3978246 gyrB Lactobacillus salivarius UCC118 DNA gyrase subunit B YP_534911.1 4451 D 364254 CDS YP_534912.1 90960996 3978247 6446..8998 1 NC_007929.1 COG0188 [L] type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 8998 gyrA 3978247 gyrA Lactobacillus salivarius UCC118 DNA gyrase subunit A YP_534912.1 6446 D 364254 CDS YP_534913.1 90960997 3978248 9217..9507 1 NC_007929.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 9507 rpsF 3978248 rpsF Lactobacillus salivarius UCC118 30S ribosomal protein S6 YP_534913.1 9217 D 364254 CDS YP_534914.1 90960998 3978249 9548..10099 1 NC_007929.1 COG0629 [L] Single-stranded DNA-binding protein; single-strand DNA binding protein 10099 ssb 3978249 ssb Lactobacillus salivarius UCC118 single-strand DNA binding protein YP_534914.1 9548 D 364254 CDS YP_534915.1 90960999 3978250 10121..10357 1 NC_007929.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 10357 rpsR 3978250 rpsR Lactobacillus salivarius UCC118 30S ribosomal protein S18 YP_534915.1 10121 D 364254 CDS YP_534916.1 90961000 3978251 complement(10418..11281) 1 NC_007929.1 COG2084 [I] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; 3-hydroxyisobutyrate dehydrogenase 11281 mmsB 3978251 mmsB Lactobacillus salivarius UCC118 3-hydroxyisobutyrate dehydrogenase YP_534916.1 10418 R 364254 CDS YP_534917.1 90961001 3978252 11427..12440 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 12440 rfaG 3978252 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_534917.1 11427 D 364254 CDS YP_534918.1 90961002 3978254 13691..15613 1 NC_007929.1 COG0367 [E] Asparagine synthase (glutamine-hydrolyzing); asparagine synthetase 15613 asnB 3978254 asnB Lactobacillus salivarius UCC118 asparagine synthetase YP_534918.1 13691 D 364254 CDS YP_534919.1 90961003 3978256 16466..16843 1 NC_007929.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 16843 mscL 3978256 mscL Lactobacillus salivarius UCC118 large-conductance mechanosensitive channel YP_534919.1 16466 D 364254 CDS YP_534920.1 90961004 3978257 complement(16903..18789) 1 NC_007929.1 COG0028 [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate oxidase 18789 3978257 LSL_0014 Lactobacillus salivarius UCC118 pyruvate oxidase YP_534920.1 16903 R 364254 CDS YP_534921.1 90961005 3978258 19313..19639 1 NC_007929.1 hypothetical protein 19639 3978258 LSL_0015 Lactobacillus salivarius UCC118 hypothetical protein YP_534921.1 19313 D 364254 CDS YP_534922.1 90961006 3978259 19783..21315 1 NC_007929.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 21315 murE 3978259 murE Lactobacillus salivarius UCC118 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_534922.1 19783 D 364254 CDS YP_534923.1 90961007 3978260 21315..22565 1 NC_007929.1 COG3919 [R] Predicted ATP-grasp enzyme; hypothetical protein 22565 3978260 LSL_0017 Lactobacillus salivarius UCC118 hypothetical protein YP_534923.1 21315 D 364254 CDS YP_534924.1 90961008 3978261 22575..23288 1 NC_007929.1 COG1794 [M] Aspartate racemase; aspartate racemase 23288 racX 3978261 racX Lactobacillus salivarius UCC118 aspartate racemase YP_534924.1 22575 D 364254 CDS YP_534925.1 90961009 3978262 complement(23323..24546) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump 24546 3978262 LSL_0019 Lactobacillus salivarius UCC118 multidrug resistance efflux pump YP_534925.1 23323 R 364254 CDS YP_534926.1 90961010 3978263 24679..25245 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 25245 3978263 LSL_0020 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_534926.1 24679 D 364254 CDS YP_534927.1 90961011 3978228 25365..26231 1 NC_007929.1 COG4975 [G] glucose uptake permease; glucose uptake protein 26231 3978228 LSL_0021 Lactobacillus salivarius UCC118 glucose uptake protein YP_534927.1 25365 D 364254 CDS YP_534928.1 90961012 3978229 26461..27807 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 27807 3978229 LSL_0022 Lactobacillus salivarius UCC118 hypothetical protein YP_534928.1 26461 D 364254 CDS YP_534929.1 90961013 3978230 27822..28382 1 NC_007929.1 hypothetical protein 28382 3978230 LSL_0023 Lactobacillus salivarius UCC118 hypothetical protein YP_534929.1 27822 D 364254 CDS YP_534930.1 90961014 3978231 28581..29495 1 NC_007929.1 COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 29495 3978231 LSL_0024 Lactobacillus salivarius UCC118 drug/metabolite exporter family protein YP_534930.1 28581 D 364254 CDS YP_534931.1 90961015 3978232 complement(29664..31466) 1 NC_007929.1 COG1164 [E] Oligoendopeptidase F; oligoendopeptidase F 31466 3978232 LSL_0025 Lactobacillus salivarius UCC118 oligoendopeptidase F YP_534931.1 29664 R 364254 CDS YP_534932.1 90961016 3978233 31822..32739 1 NC_007929.1 COG0031 [E] Cysteine synthase; cysteine synthase 32739 cysK 3978233 cysK Lactobacillus salivarius UCC118 cysteine synthase YP_534932.1 31822 D 364254 CDS YP_534933.1 90961017 3978234 32755..33897 1 NC_007929.1 COG0626 [E] Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine beta-lyase / cystathionine gamma-lyase 33897 metC 3978234 metC Lactobacillus salivarius UCC118 cystathionine beta-lyase / cystathionine gamma-lyase YP_534933.1 32755 D 364254 CDS YP_534934.1 90961018 3978235 34052..35143 1 NC_007929.1 COG0371 [C] Glycerol dehydrogenase and related enzymes; glycerol dehydrogenase 35143 gldA 3978235 gldA Lactobacillus salivarius UCC118 glycerol dehydrogenase YP_534934.1 34052 D 364254 CDS YP_534935.1 90961019 3978236 35246..35680 1 NC_007929.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 35680 3978236 LSL_0029 Lactobacillus salivarius UCC118 methionine sulfoxide reductase B YP_534935.1 35246 D 364254 CDS YP_534936.1 90961020 3978237 35796..36092 1 NC_007929.1 DNA-damage-inducible protein J 36092 3978237 LSL_0030 Lactobacillus salivarius UCC118 DNA-damage-inducible protein J YP_534936.1 35796 D 364254 CDS YP_534937.1 90961021 3978240 38074..38523 1 NC_007929.1 COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 38523 3978240 LSL_0031 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_534937.1 38074 D 364254 CDS YP_534938.1 90961022 3978241 38535..40268 1 NC_007929.1 COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter permease/ATP-binding protein 40268 3978241 LSL_0032 Lactobacillus salivarius UCC118 multidrug ABC transporter permease/ATP-binding protein YP_534938.1 38535 D 364254 CDS YP_534939.1 90961023 3978242 40261..42042 1 NC_007929.1 COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug/protein/lipid ABC transporter family ATP-binding and permease 42042 3978242 LSL_0033 Lactobacillus salivarius UCC118 multidrug/protein/lipid ABC transporter family ATP-binding and permease YP_534939.1 40261 D 364254 CDS YP_534940.1 90961024 3978243 42151..42966 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 42966 3978243 LSL_0034 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_534940.1 42151 D 364254 CDS YP_534941.1 90961025 3978244 43139..43849 1 NC_007929.1 COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 43849 3978244 LSL_0035 Lactobacillus salivarius UCC118 two-component response regulator YP_534941.1 43139 D 364254 CDS YP_534942.1 90961026 3978245 43878..45743 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; two-component sensor kinase yycG 45743 3978245 LSL_0036 Lactobacillus salivarius UCC118 two-component sensor kinase yycG YP_534942.1 43878 D 364254 CDS YP_534943.1 90961027 3978211 45733..47070 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 47070 3978211 LSL_0037 Lactobacillus salivarius UCC118 hypothetical protein YP_534943.1 45733 D 364254 CDS YP_534944.1 90961028 3978212 47082..47882 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 47882 3978212 LSL_0038 Lactobacillus salivarius UCC118 hypothetical protein YP_534944.1 47082 D 364254 CDS YP_534945.1 90961029 3978214 48364..49167 1 NC_007929.1 COG1235 [R] Metal-dependent hydrolases of the beta-lactamase superfamily I; zinc-dependent hydrolase 49167 phnP 3978214 phnP Lactobacillus salivarius UCC118 zinc-dependent hydrolase YP_534945.1 48364 D 364254 CDS YP_534946.1 90961030 3978215 49266..50573 1 NC_007929.1 COG0265 [O] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; endopeptidase 50573 degP 3978215 degP Lactobacillus salivarius UCC118 endopeptidase YP_534946.1 49266 D 364254 CDS YP_534947.1 90961031 3978216 50970..51449 1 NC_007929.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 51449 3978216 LSL_0043 Lactobacillus salivarius UCC118 rRNA large subunit methyltransferase YP_534947.1 50970 D 364254 CDS YP_534948.1 90961032 3978217 51615..52262 1 NC_007929.1 COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase 52262 3978217 LSL_0044 Lactobacillus salivarius UCC118 oxidoreductase YP_534948.1 51615 D 364254 CDS YP_534949.1 90961033 3978218 52274..52666 1 NC_007929.1 COG1522 [K] Transcriptional regulators; hypothetical protein 52666 3978218 LSL_0045 Lactobacillus salivarius UCC118 hypothetical protein YP_534949.1 52274 D 364254 CDS YP_534950.1 90961034 3978219 52659..53507 1 NC_007929.1 COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Short chain dehydrogenase 53507 3978219 LSL_0046 Lactobacillus salivarius UCC118 Short chain dehydrogenase YP_534950.1 52659 D 364254 CDS YP_534951.1 90961035 3978220 53643..54395 1 NC_007929.1 hypothetical protein 54395 3978220 LSL_0047 Lactobacillus salivarius UCC118 hypothetical protein YP_534951.1 53643 D 364254 CDS YP_534952.1 90961036 3978221 complement(54734..56122) 1 NC_007929.1 COG2271 [G] Sugar phosphate permease; glycerol-3-phosphate transporter 56122 glpT 3978221 glpT Lactobacillus salivarius UCC118 glycerol-3-phosphate transporter YP_534952.1 54734 R 364254 CDS YP_534953.1 90961037 3978222 56327..56845 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase 56845 3978222 LSL_0049 Lactobacillus salivarius UCC118 IS1223 family transposase YP_534953.1 56327 D 364254 CDS YP_534954.1 90961038 3978224 complement(57833..58300) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS200 family transposase 58300 3978224 LSL_0050 Lactobacillus salivarius UCC118 IS200 family transposase YP_534954.1 57833 R 364254 CDS YP_534955.1 90961039 3978226 complement(60583..60777) 1 NC_007929.1 hypothetical protein 60777 3978226 LSL_0051 Lactobacillus salivarius UCC118 hypothetical protein YP_534955.1 60583 R 364254 CDS YP_534956.1 90961040 3978227 60786..62045 1 NC_007929.1 COG0534 [V] Na+-driven multidrug efflux pump; Na+ driven multidrug efflux pump 62045 3978227 LSL_0052 Lactobacillus salivarius UCC118 Na+ driven multidrug efflux pump YP_534956.1 60786 D 364254 CDS YP_534957.1 90961041 3978194 complement(62094..63575) 1 NC_007929.1 COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 63575 3978194 LSL_0053 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_534957.1 62094 R 364254 CDS YP_534958.1 90961042 3978195 63881..64300 1 NC_007929.1 hypothetical protein 64300 3978195 LSL_0054 Lactobacillus salivarius UCC118 hypothetical protein YP_534958.1 63881 D 364254 CDS YP_534959.1 90961043 3978196 64386..64970 1 NC_007929.1 COG0652 [O] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase 64970 ppiB 3978196 ppiB Lactobacillus salivarius UCC118 peptidyl-prolyl cis-trans isomerase YP_534959.1 64386 D 364254 CDS YP_534960.1 90961044 3978197 65121..65840 1 NC_007929.1 COG2071 [R] Predicted glutamine amidotransferases; glutamine amidotransferase, class I 65840 3978197 LSL_0056 Lactobacillus salivarius UCC118 glutamine amidotransferase, class I YP_534960.1 65121 D 364254 CDS YP_534961.1 90961045 3978198 complement(65893..67251) 1 NC_007929.1 COG2918 [H] Gamma-glutamylcysteine synthetase; glutamate--cysteine ligase 67251 gshA 3978198 gshA Lactobacillus salivarius UCC118 glutamate--cysteine ligase YP_534961.1 65893 R 364254 CDS YP_534962.1 90961046 3978199 67454..67684 1 NC_007929.1 hypothetical protein 67684 3978199 LSL_0058 Lactobacillus salivarius UCC118 hypothetical protein YP_534962.1 67454 D 364254 CDS YP_534963.1 90961047 3978200 67810..69918 1 NC_007929.1 COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 69918 clpL 3978200 clpL Lactobacillus salivarius UCC118 ATP-dependent Clp protease ATP-binding subunit YP_534963.1 67810 D 364254 CDS YP_534964.1 90961048 3978201 70130..70606 1 NC_007929.1 COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 70606 3978201 LSL_0060 Lactobacillus salivarius UCC118 universal stress protein YP_534964.1 70130 D 364254 CDS YP_534965.1 90961049 3978202 complement(70667..70843) 1 NC_007929.1 hypothetical protein 70843 3978202 LSL_0061 Lactobacillus salivarius UCC118 hypothetical protein YP_534965.1 70667 R 364254 CDS YP_534966.1 90961050 3978203 complement(70946..72403) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein / glutamine transport system permease 72403 glnP 3978203 glnP Lactobacillus salivarius UCC118 glutamine-binding protein / glutamine transport system permease YP_534966.1 70946 R 364254 CDS YP_534967.1 90961051 3978204 complement(72643..73677) 1 NC_007929.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 73677 ilvE 3978204 ilvE Lactobacillus salivarius UCC118 branched-chain amino acid aminotransferase YP_534967.1 72643 R 364254 CDS YP_534968.1 90961052 3978208 complement(79497..80489) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; sucrose operon repressor 80489 scrR 3978208 scrR Lactobacillus salivarius UCC118 sucrose operon repressor YP_534968.1 79497 R 364254 CDS YP_534969.1 90961053 3978209 complement(80508..81998) 1 NC_007929.1 COG1621 [G] beta-fructosidases (levanase/invertase); sucrose-6-phosphate hydrolase 81998 scrB 3978209 scrB Lactobacillus salivarius UCC118 sucrose-6-phosphate hydrolase YP_534969.1 80508 R 364254 CDS YP_534970.1 90961054 3978210 82401..84335 1 NC_007929.1 COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system, sucrose-specific IIABC component 84335 scrA 3978210 scrA Lactobacillus salivarius UCC118 PTS system, sucrose-specific IIABC component YP_534970.1 82401 D 364254 CDS YP_534971.1 90961055 3978176 84450..86195 1 NC_007929.1 COG0366 [G] Glycosidases; neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase 86195 amyB 3978176 amyB Lactobacillus salivarius UCC118 neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase YP_534971.1 84450 D 364254 CDS YP_534972.1 90961056 3978177 86310..87698 1 NC_007929.1 COG0168 [P] Trk-type K+ transport systems, membrane components; potassium uptake protein ktrB 87698 ktrB 3978177 ktrB Lactobacillus salivarius UCC118 potassium uptake protein ktrB YP_534972.1 86310 D 364254 CDS YP_534973.1 90961057 3978178 87718..88356 1 NC_007929.1 COG0569 [P] K+ transport systems, NAD-binding component; potassium uptake protein 88356 ktrA 3978178 ktrA Lactobacillus salivarius UCC118 potassium uptake protein YP_534973.1 87718 D 364254 CDS YP_534974.1 90961058 3978179 88433..89086 1 NC_007929.1 COG2738 [R] Predicted Zn-dependent protease; Zn-dependent protease 89086 3978179 LSL_0070 Lactobacillus salivarius UCC118 Zn-dependent protease YP_534974.1 88433 D 364254 CDS YP_534975.1 90961059 3978180 89113..90129 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; N-acetylglucosaminyltransferase 90129 3978180 LSL_0071 Lactobacillus salivarius UCC118 N-acetylglucosaminyltransferase YP_534975.1 89113 D 364254 CDS YP_534976.1 90961060 3978181 complement(90207..90479) 1 NC_007929.1 hypothetical protein 90479 3978181 LSL_0072 Lactobacillus salivarius UCC118 hypothetical protein YP_534976.1 90207 R 364254 CDS YP_534977.1 90961061 3978182 90664..92457 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 92457 3978182 LSL_0073 Lactobacillus salivarius UCC118 hypothetical protein YP_534977.1 90664 D 364254 CDS YP_534978.1 90961062 3978183 92594..93130 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; BioY protein 93130 3978183 LSL_0074 Lactobacillus salivarius UCC118 BioY protein YP_534978.1 92594 D 364254 CDS YP_534979.1 90961063 3978184 93373..94629 1 NC_007929.1 COG1686 [M] D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine serine-type carboxypeptidase 94629 dacC 3978184 dacC Lactobacillus salivarius UCC118 D-alanyl-D-alanine serine-type carboxypeptidase YP_534979.1 93373 D 364254 CDS YP_534980.1 90961064 3978185 94842..95618 1 NC_007929.1 COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 95618 3978185 LSL_0076 Lactobacillus salivarius UCC118 DeoR family transcriptional regulator YP_534980.1 94842 D 364254 CDS YP_534981.1 90961065 3978188 complement(97235..97936) 1 NC_007929.1 hypothetical protein 97936 3978188 LSL_0077 Lactobacillus salivarius UCC118 hypothetical protein YP_534981.1 97235 R 364254 CDS YP_534982.1 90961066 3978189 complement(97936..99414) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B 99414 3978189 LSL_0078 Lactobacillus salivarius UCC118 multidrug resistance protein B YP_534982.1 97936 R 364254 CDS YP_534983.1 90961067 3978190 99569..100015 1 NC_007929.1 COG0583 [K] Transcriptional regulator; MerR family transcriptional regulator 100015 3978190 LSL_0079 Lactobacillus salivarius UCC118 MerR family transcriptional regulator YP_534983.1 99569 D 364254 CDS YP_534984.1 90961068 3978191 100015..100395 1 NC_007929.1 COG0346 [E] Lactoylglutathione lyase and related lyases; glyoxalase 100395 gloA 3978191 gloA Lactobacillus salivarius UCC118 glyoxalase YP_534984.1 100015 D 364254 CDS YP_534985.1 90961069 3978192 complement(100444..101130) 1 NC_007929.1 COG1811 [R] Uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 101130 3978192 LSL_0081 Lactobacillus salivarius UCC118 hypothetical protein YP_534985.1 100444 R 364254 CDS YP_534986.1 90961070 3978193 complement(101288..102583) 1 NC_007929.1 COG1653 [G] ABC-type sugar transport system, periplasmic component; sugar-binding protein 102583 3978193 LSL_0082 Lactobacillus salivarius UCC118 sugar-binding protein YP_534986.1 101288 R 364254 CDS YP_534987.1 90961071 3978158 complement(102593..103249) 1 NC_007929.1 COG2197 [TK] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component response regulator 103249 3978158 LSL_0083 Lactobacillus salivarius UCC118 two-component response regulator YP_534987.1 102593 R 364254 CDS YP_534988.1 90961072 3978159 complement(103265..104566) 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; two component system histidine kinase 104566 baeS 3978159 baeS Lactobacillus salivarius UCC118 two component system histidine kinase YP_534988.1 103265 R 364254 CDS YP_534989.1 90961073 3978160 complement(104563..105555) 1 NC_007929.1 COG1653 [G] ABC-type sugar transport system, periplasmic component; D-ribose-binding protein 105555 rbsB 3978160 rbsB Lactobacillus salivarius UCC118 D-ribose-binding protein YP_534989.1 104563 R 364254 CDS YP_534990.1 90961074 3978161 105826..106824 1 NC_007929.1 COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component 106824 manX 3978161 manX Lactobacillus salivarius UCC118 PTS system, mannose-specific IIAB component YP_534990.1 105826 D 364254 CDS YP_534991.1 90961075 3978162 106843..107652 1 NC_007929.1 COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 107652 3978162 LSL_0087 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIC component YP_534991.1 106843 D 364254 CDS YP_534992.1 90961076 3978163 107671..108585 1 NC_007929.1 COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 108585 3978163 LSL_0088 Lactobacillus salivarius UCC118 PTS system, mannose-specific IID component YP_534992.1 107671 D 364254 CDS YP_534993.1 90961077 3978164 108607..108996 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 108996 3978164 LSL_0089 Lactobacillus salivarius UCC118 hypothetical protein YP_534993.1 108607 D 364254 CDS YP_534994.1 90961078 3978165 complement(109121..110671) 1 NC_007929.1 COG1388 [M] FOG: LysM repeat; hypothetical protein 110671 3978165 LSL_0090 Lactobacillus salivarius UCC118 hypothetical protein YP_534994.1 109121 R 364254 CDS YP_534995.1 90961079 3978166 111092..112183 1 NC_007929.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 112183 serC 3978166 serC Lactobacillus salivarius UCC118 phosphoserine aminotransferase YP_534995.1 111092 D 364254 CDS YP_534996.1 90961080 3978167 112191..113375 1 NC_007929.1 COG0111 [HE] Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 113375 serA 3978167 serA Lactobacillus salivarius UCC118 D-3-phosphoglycerate dehydrogenase YP_534996.1 112191 D 364254 CDS YP_534997.1 90961081 3978168 113377..113973 1 NC_007929.1 COG1573 [L] Uracil-DNA glycosylase; Uracil DNA glycosylase superfamily protein 113973 3978168 LSL_0093 Lactobacillus salivarius UCC118 Uracil DNA glycosylase superfamily protein YP_534997.1 113377 D 364254 CDS YP_534998.1 90961082 3978169 114069..114566 1 NC_007929.1 hypothetical protein 114566 3978169 LSL_0094 Lactobacillus salivarius UCC118 hypothetical protein YP_534998.1 114069 D 364254 CDS YP_534999.1 90961083 3978170 114740..118189 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 118189 3978170 LSL_0095 Lactobacillus salivarius UCC118 hypothetical protein YP_534999.1 114740 D 364254 CDS YP_535000.1 90961084 3978171 118318..118758 1 NC_007929.1 hypothetical protein 118758 3978171 LSL_0096 Lactobacillus salivarius UCC118 hypothetical protein YP_535000.1 118318 D 364254 CDS YP_535001.1 90961085 3978172 complement(118704..118871) 1 NC_007929.1 hypothetical protein 118871 3978172 LSL_0097 Lactobacillus salivarius UCC118 hypothetical protein YP_535001.1 118704 R 364254 CDS YP_535002.1 90961086 3978173 118952..119857 1 NC_007929.1 COG1343 [L] Uncharacterized protein predicted to be involved in DNA repair; CRISPR-associated protein 119857 cas1 3978173 cas1 Lactobacillus salivarius UCC118 CRISPR-associated protein YP_535002.1 118952 D 364254 CDS YP_535003.1 90961087 3978174 119835..120140 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; CRISPR-associated protein 120140 cas2 3978174 cas2 Lactobacillus salivarius UCC118 CRISPR-associated protein YP_535003.1 119835 D 364254 CDS YP_535004.1 90961088 3978175 120137..120808 1 NC_007929.1 CRISPR-associated Csn2 family protein 120808 3978175 LSL_0100 Lactobacillus salivarius UCC118 CRISPR-associated Csn2 family protein YP_535004.1 120137 D 364254 CDS YP_535005.1 90961089 3978138 122941..123261 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; PadR family transcriptional regulator 123261 3978138 LSL_0105 Lactobacillus salivarius UCC118 PadR family transcriptional regulator YP_535005.1 122941 D 364254 CDS YP_535006.1 90961090 3978139 123264..123869 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 123869 3978139 LSL_0106 Lactobacillus salivarius UCC118 hypothetical protein YP_535006.1 123264 D 364254 CDS YP_535007.1 90961091 3978140 123872..124837 1 NC_007929.1 hypothetical protein 124837 3978140 LSL_0107 Lactobacillus salivarius UCC118 hypothetical protein YP_535007.1 123872 D 364254 CDS YP_535008.1 90961092 3978141 124856..125086 1 NC_007929.1 COG0583 [K] Transcriptional regulator; stress-responsive transcriptional regulator PspC 125086 3978141 LSL_0108 Lactobacillus salivarius UCC118 stress-responsive transcriptional regulator PspC YP_535008.1 124856 D 364254 CDS YP_535009.1 90961093 3978142 125426..125737 1 NC_007929.1 hypothetical protein 125737 3978142 LSL_0109 Lactobacillus salivarius UCC118 hypothetical protein YP_535009.1 125426 D 364254 CDS YP_535010.1 90961094 3978143 126139..127653 1 NC_007929.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 127653 glpK 3978143 glpK Lactobacillus salivarius UCC118 glycerol kinase YP_535010.1 126139 D 364254 CDS YP_535011.1 90961095 3978144 127666..129495 1 NC_007929.1 COG0240 [C] Glycerol-3-phosphate dehydrogenase; alpha-glycerophosphate oxidase 129495 glpO 3978144 glpO Lactobacillus salivarius UCC118 alpha-glycerophosphate oxidase YP_535011.1 127666 D 364254 CDS YP_535012.1 90961096 3978145 129531..130238 1 NC_007929.1 COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein 130238 glpF 3978145 glpF Lactobacillus salivarius UCC118 glycerol uptake facilitator protein YP_535012.1 129531 D 364254 CDS YP_535013.1 90961097 3978146 130357..131445 1 NC_007929.1 COG3842 [E] ABC-type spermidine/putrescine transport systems, ATPase components; spermidine/putrescine ABC transporter ATP-binding protein 131445 3978146 LSL_0113 Lactobacillus salivarius UCC118 spermidine/putrescine ABC transporter ATP-binding protein YP_535013.1 130357 D 364254 CDS YP_535014.1 90961098 3978147 131461..132261 1 NC_007929.1 COG1176 [E] ABC-type spermidine/putrescine transport system, permease component I; spermidine/putrescine ABC transporter permease 132261 potB 3978147 potB Lactobacillus salivarius UCC118 spermidine/putrescine ABC transporter permease YP_535014.1 131461 D 364254 CDS YP_535015.1 90961099 3978148 132262..133098 1 NC_007929.1 COG1177 [E] ABC-type spermidine/putrescine transport system, permease component II; spermidine/putrescine ABC transporter permease 133098 potC 3978148 potC Lactobacillus salivarius UCC118 spermidine/putrescine ABC transporter permease YP_535015.1 132262 D 364254 CDS YP_535016.1 90961100 3978149 133098..134183 1 NC_007929.1 COG0687 [E] Spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding protein 134183 potD 3978149 potD Lactobacillus salivarius UCC118 spermidine/putrescine-binding protein YP_535016.1 133098 D 364254 CDS YP_535017.1 90961101 3978150 134991..135983 1 NC_007929.1 COG2984 [R] ABC-type uncharacterized transport system, periplasmic component; ABC transporter substrate-binding protein 135983 3978150 LSL_0117 Lactobacillus salivarius UCC118 ABC transporter substrate-binding protein YP_535017.1 134991 D 364254 CDS YP_535018.1 90961102 3978151 135980..136876 1 NC_007929.1 COG0390 [R] ABC-type uncharacterized transport system, permease component; ABC transporter permease 136876 3978151 LSL_0118 Lactobacillus salivarius UCC118 ABC transporter permease YP_535018.1 135980 D 364254 CDS YP_535019.1 90961103 3978152 136873..137637 1 NC_007929.1 COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein 137637 3978152 LSL_0119 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535019.1 136873 D 364254 CDS YP_535020.1 90961104 3978153 complement(137678..138307) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 138307 3978153 LSL_0120 Lactobacillus salivarius UCC118 hypothetical protein YP_535020.1 137678 R 364254 CDS YP_535021.1 90961105 3978154 complement(138486..138959) 1 NC_007929.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 138959 greA 3978154 greA Lactobacillus salivarius UCC118 transcription elongation factor GreA YP_535021.1 138486 R 364254 CDS YP_535022.1 90961106 3978155 139088..139195 1 NC_007929.1 hypothetical protein 139195 3978155 LSL_0122 Lactobacillus salivarius UCC118 hypothetical protein YP_535022.1 139088 D 364254 CDS YP_535023.1 90961107 3978156 139402..140796 1 NC_007929.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 140796 trmE 3978156 trmE Lactobacillus salivarius UCC118 tRNA modification GTPase TrmE YP_535023.1 139402 D 364254 CDS YP_535024.1 90961108 3978157 140820..142733 1 NC_007929.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 142733 gidA 3978157 gidA Lactobacillus salivarius UCC118 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_535024.1 140820 D 364254 CDS YP_535025.1 90961109 3978120 complement(143182..143853) 1 NC_007929.1 COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 143853 gpmB 3978120 gpmB Lactobacillus salivarius UCC118 phosphoglycerate mutase YP_535025.1 143182 R 364254 CDS YP_535026.1 90961110 3978121 complement(143909..144772) 1 NC_007929.1 COG1266 [R] Predicted metal-dependent membrane protease; CAAX amino protease 144772 3978121 LSL_0126 Lactobacillus salivarius UCC118 CAAX amino protease YP_535026.1 143909 R 364254 CDS YP_535027.1 90961111 3978122 144908..145378 1 NC_007929.1 COG0716 [C] Flavodoxins; flavodoxin 145378 fldA 3978122 fldA Lactobacillus salivarius UCC118 flavodoxin YP_535027.1 144908 D 364254 CDS YP_535028.1 90961112 3978123 145393..145803 1 NC_007929.1 COG1791 [S] Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein 145803 3978123 LSL_0128 Lactobacillus salivarius UCC118 hypothetical protein YP_535028.1 145393 D 364254 CDS YP_535029.1 90961113 3978125 146574..147698 1 NC_007929.1 COG0620 [E] Methionine synthase II (cobalamin-independent); 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 147698 metE 3978125 metE Lactobacillus salivarius UCC118 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_535029.1 146574 D 364254 CDS YP_535030.1 90961114 3978126 147764..148606 1 NC_007929.1 COG1464 [P] ABC-type metal ion transport system, periplasmic component/surface antigen; ABC transporter substrate-binding protein 148606 3978126 LSL_0130 Lactobacillus salivarius UCC118 ABC transporter substrate-binding protein YP_535030.1 147764 D 364254 CDS YP_535031.1 90961115 3978127 148628..149689 1 NC_007929.1 COG1135 [P] ABC-type metal ion transport system, ATPase component; ABC transporter, ATP-binding protein 149689 3978127 LSL_0131 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535031.1 148628 D 364254 CDS YP_535032.1 90961116 3978128 149682..150383 1 NC_007929.1 COG2011 [P] ABC-type metal ion transport system, permease component; ABC transporter permease 150383 3978128 LSL_0132 Lactobacillus salivarius UCC118 ABC transporter permease YP_535032.1 149682 D 364254 CDS YP_535033.1 90961117 3978129 150425..151573 1 NC_007929.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 151573 3978129 LSL_0133 Lactobacillus salivarius UCC118 succinyl-diaminopimelate desuccinylase YP_535033.1 150425 D 364254 CDS YP_535034.1 90961118 3978130 complement(151625..152269) 1 NC_007929.1 COG0778 [C] Nitroreductase; NAD(P)H-dependent quinone reductase 152269 3978130 LSL_0134 Lactobacillus salivarius UCC118 NAD(P)H-dependent quinone reductase YP_535034.1 151625 R 364254 CDS YP_535035.1 90961119 3978131 152437..153270 1 NC_007929.1 acetoacetate decarboxylase 153270 3978131 LSL_0135 Lactobacillus salivarius UCC118 acetoacetate decarboxylase YP_535035.1 152437 D 364254 CDS YP_535036.1 90961120 3978132 153287..154168 1 NC_007929.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 154168 3978132 LSL_0136 Lactobacillus salivarius UCC118 3-hydroxybutyryl-CoA dehydrogenase YP_535036.1 153287 D 364254 CDS YP_535037.1 90961121 3978133 complement(154226..155581) 1 NC_007929.1 COG0446 [R] Uncharacterized NAD(FAD)-dependent dehydrogenases; NADH peroxidase 155581 3978133 LSL_0137 Lactobacillus salivarius UCC118 NADH peroxidase YP_535037.1 154226 R 364254 CDS YP_535038.1 90961122 3978134 155872..157971 1 NC_007929.1 COG1982 [E] Arginine/lysine/ornithine decarboxylases; ornithine decarboxylase 157971 3978134 LSL_0138 Lactobacillus salivarius UCC118 ornithine decarboxylase YP_535038.1 155872 D 364254 CDS YP_535039.1 90961123 3978135 complement(158031..158555) 1 NC_007929.1 hypothetical protein 158555 3978135 LSL_0139 Lactobacillus salivarius UCC118 hypothetical protein YP_535039.1 158031 R 364254 CDS YP_535040.1 90961124 3978137 160075..160761 1 NC_007929.1 COG2011 [P] ABC-type metal ion transport system, permease component; ABC transporter permease 160761 3978137 LSL_0140 Lactobacillus salivarius UCC118 ABC transporter permease YP_535040.1 160075 D 364254 CDS YP_535041.1 90961125 3978102 160831..161646 1 NC_007929.1 COG1464 [P] ABC-type metal ion transport system, periplasmic component/surface antigen; ABC transporter substrate-binding protein 161646 3978102 LSL_0141 Lactobacillus salivarius UCC118 ABC transporter substrate-binding protein YP_535041.1 160831 D 364254 CDS YP_535042.1 90961126 3978103 complement(161821..162375) 1 NC_007929.1 hypothetical protein 162375 3978103 LSL_0142 Lactobacillus salivarius UCC118 hypothetical protein YP_535042.1 161821 R 364254 CDS YP_535043.1 90961127 3978104 162486..162632 1 NC_007929.1 hypothetical protein 162632 3978104 LSL_0143 Lactobacillus salivarius UCC118 hypothetical protein YP_535043.1 162486 D 364254 CDS YP_535044.1 90961128 3978105 162829..163623 1 NC_007929.1 Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 163623 gdh 3978105 gdh Lactobacillus salivarius UCC118 glucose-1-dehydrogenase YP_535044.1 162829 D 364254 CDS YP_535045.1 90961129 3978106 163647..164489 1 NC_007929.1 COG4975 [G] glucose uptake permease; glucose uptake protein 164489 3978106 LSL_0145 Lactobacillus salivarius UCC118 glucose uptake protein YP_535045.1 163647 D 364254 CDS YP_535046.1 90961130 3978107 complement(164531..165409) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 165409 3978107 LSL_0146 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_535046.1 164531 R 364254 CDS YP_535047.1 90961131 3978108 165518..166387 1 NC_007929.1 COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase 166387 3978108 LSL_0147 Lactobacillus salivarius UCC118 2,5-diketo-D-gluconic acid reductase YP_535047.1 165518 D 364254 CDS YP_535048.1 90961132 3978109 166411..167205 1 NC_007929.1 COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Short chain dehydrogenase 167205 3978109 LSL_0148 Lactobacillus salivarius UCC118 Short chain dehydrogenase YP_535048.1 166411 D 364254 CDS YP_535049.1 90961133 3978110 complement(167313..167540) 1 NC_007929.1 hypothetical protein 167540 3978110 LSL_0149 Lactobacillus salivarius UCC118 hypothetical protein YP_535049.1 167313 R 364254 CDS YP_535050.1 90961134 3978111 167467..167679 1 NC_007929.1 hypothetical protein 167679 3978111 LSL_0150 Lactobacillus salivarius UCC118 hypothetical protein YP_535050.1 167467 D 364254 CDS YP_535051.1 90961135 3978113 177223..178320 1 NC_007929.1 COG1071 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit; pyruvate dehydrogenase E1 component alpha subunit 178320 acoA 3978113 acoA Lactobacillus salivarius UCC118 pyruvate dehydrogenase E1 component alpha subunit YP_535051.1 177223 D 364254 CDS YP_535052.1 90961136 3978114 178323..179300 1 NC_007929.1 COG0022 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit; pyruvate dehydrogenase E1 component beta subunit 179300 acoB 3978114 acoB Lactobacillus salivarius UCC118 pyruvate dehydrogenase E1 component beta subunit YP_535052.1 178323 D 364254 CDS YP_535053.1 90961137 3978115 179317..180597 1 NC_007929.1 COG0508 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex 180597 aceF 3978115 aceF Lactobacillus salivarius UCC118 dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex YP_535053.1 179317 D 364254 CDS YP_535054.1 90961138 3978116 180605..182011 1 NC_007929.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 182011 lpd 3978116 lpd Lactobacillus salivarius UCC118 dihydrolipoamide dehydrogenase YP_535054.1 180605 D 364254 CDS YP_535055.1 90961139 3978117 182098..183117 1 NC_007929.1 COG0095 [H] Lipoate-protein ligase A; lipoate-protein ligase A 183117 lplA 3978117 lplA Lactobacillus salivarius UCC118 lipoate-protein ligase A YP_535055.1 182098 D 364254 CDS YP_535056.1 90961140 3978118 183230..183994 1 NC_007929.1 COG0392 [S] Predicted integral membrane protein; integral membrane protein 183994 3978118 LSL_0158 Lactobacillus salivarius UCC118 integral membrane protein YP_535056.1 183230 D 364254 CDS YP_535057.1 90961141 3978119 184064..185197 1 NC_007929.1 hypothetical protein 185197 3978119 LSL_0159 Lactobacillus salivarius UCC118 hypothetical protein YP_535057.1 184064 D 364254 CDS YP_535058.1 90961142 3978082 complement(185249..185599) 1 NC_007929.1 hypothetical protein 185599 3978082 LSL_0160 Lactobacillus salivarius UCC118 hypothetical protein YP_535058.1 185249 R 364254 CDS YP_535059.1 90961143 3978083 185735..186004 1 NC_007929.1 ACT domain-containing protein; hypothetical protein 186004 3978083 LSL_0161 Lactobacillus salivarius UCC118 hypothetical protein YP_535059.1 185735 D 364254 CDS YP_535060.1 90961144 3978084 186021..187364 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 187364 3978084 LSL_0162 Lactobacillus salivarius UCC118 hypothetical protein YP_535060.1 186021 D 364254 CDS YP_535061.1 90961145 3978085 187630..188385 1 NC_007929.1 COG1349 [KG] Transcriptional regulators of sugar metabolism; transcription regulator of fructose operon 188385 3978085 LSL_0163 Lactobacillus salivarius UCC118 transcription regulator of fructose operon YP_535061.1 187630 D 364254 CDS YP_535062.1 90961146 3978086 188382..189296 1 NC_007929.1 COG1105 [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); 1-phosphofructokinase 189296 fruK 3978086 fruK Lactobacillus salivarius UCC118 1-phosphofructokinase YP_535062.1 188382 D 364254 CDS YP_535063.1 90961147 3978087 189324..191279 1 NC_007929.1 COG1299 [G] Phosphotransferase system, fructose-specific IIC component; PTS system, fructose-specific IIABC component 191279 fruA 3978087 fruA Lactobacillus salivarius UCC118 PTS system, fructose-specific IIABC component YP_535063.1 189324 D 364254 CDS YP_535064.1 90961148 3978088 191403..192605 1 NC_007929.1 hypothetical protein 192605 3978088 LSL_0166 Lactobacillus salivarius UCC118 hypothetical protein YP_535064.1 191403 D 364254 CDS YP_535065.1 90961149 3978089 192586..193263 1 NC_007929.1 hypothetical protein 193263 3978089 LSL_0167 Lactobacillus salivarius UCC118 hypothetical protein YP_535065.1 192586 D 364254 CDS YP_535066.1 90961150 3978090 complement(193380..194819) 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 194819 3978090 LSL_0168 Lactobacillus salivarius UCC118 amino acid permease YP_535066.1 193380 R 364254 CDS YP_535067.1 90961151 3978091 complement(195072..196886) 1 NC_007929.1 COG0474 [P] Cation transport ATPase; lead, cadmium, zinc and mercury transporting ATPase 196886 3978091 LSL_0169 Lactobacillus salivarius UCC118 lead, cadmium, zinc and mercury transporting ATPase YP_535067.1 195072 R 364254 CDS YP_535068.1 90961152 3978092 complement(197018..197881) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 197881 3978092 LSL_0170 Lactobacillus salivarius UCC118 DegV family protein YP_535068.1 197018 R 364254 CDS YP_535069.1 90961153 3978093 198103..199038 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 199038 rfaG 3978093 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535069.1 198103 D 364254 CDS YP_535070.1 90961154 3978094 199067..199732 1 NC_007929.1 COG0518 [F] GMP synthase - Glutamine amidotransferase domain; glutamine-hydrolyzing; GMP synthase 199732 guaA 3978094 guaA Lactobacillus salivarius UCC118 GMP synthase YP_535070.1 199067 D 364254 CDS YP_535071.1 90961155 3978095 complement(199775..200134) 1 NC_007929.1 COG2050 [Q] Uncharacterized protein, possibly involved in aromatic compounds catabolism; ComA operon protein 2 200134 comA 3978095 comA Lactobacillus salivarius UCC118 ComA operon protein 2 YP_535071.1 199775 R 364254 CDS YP_535072.1 90961156 3978096 200216..201037 1 NC_007929.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 201037 menB 3978096 menB Lactobacillus salivarius UCC118 naphthoate synthase YP_535072.1 200216 D 364254 CDS YP_535073.1 90961157 3978097 201037..202470 1 NC_007929.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase 202470 menE 3978097 menE Lactobacillus salivarius UCC118 O-succinylbenzoic acid--CoA ligase YP_535073.1 201037 D 364254 CDS YP_535074.1 90961158 3978098 202545..203285 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; ErfK family protein 203285 3978098 LSL_0176 Lactobacillus salivarius UCC118 ErfK family protein YP_535074.1 202545 D 364254 CDS YP_535075.1 90961159 3978099 203419..204789 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B 204789 3978099 LSL_0177 Lactobacillus salivarius UCC118 multidrug resistance protein B YP_535075.1 203419 D 364254 CDS YP_535076.1 90961160 3978100 204794..205207 1 NC_007929.1 COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 205207 3978100 LSL_0178 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_535076.1 204794 D 364254 CDS YP_535077.1 90961161 3978101 205303..206721 1 NC_007929.1 COG4690 [E] Dipeptidase; dipeptidase A 206721 3978101 LSL_0179 Lactobacillus salivarius UCC118 dipeptidase A YP_535077.1 205303 D 364254 CDS YP_535078.1 90961162 3978067 complement(206783..207865) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator 207865 3978067 LSL_0180 Lactobacillus salivarius UCC118 LytR family transcriptional regulator YP_535078.1 206783 R 364254 CDS YP_535079.1 90961163 3978068 complement(207879..208244) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 208244 3978068 LSL_0181 Lactobacillus salivarius UCC118 hypothetical protein YP_535079.1 207879 R 364254 CDS YP_535080.1 90961164 3978069 complement(208246..209091) 1 NC_007929.1 COG0679 [R] Predicted permeases; hypothetical protein 209091 3978069 LSL_0182 Lactobacillus salivarius UCC118 hypothetical protein YP_535080.1 208246 R 364254 CDS YP_535081.1 90961165 3978070 209213..210070 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 210070 3978070 LSL_0183 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_535081.1 209213 D 364254 CDS YP_535082.1 90961166 3978071 210088..210753 1 NC_007929.1 COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatase 210753 3978071 LSL_0184 Lactobacillus salivarius UCC118 phosphatase YP_535082.1 210088 D 364254 CDS YP_535083.1 90961167 3978072 210768..211238 1 NC_007929.1 acetyltransferase 211238 wecD 3978072 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535083.1 210768 D 364254 CDS YP_535084.1 90961168 3978073 211461..213146 1 NC_007929.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 213146 3978073 LSL_0186 Lactobacillus salivarius UCC118 acetolactate synthase YP_535084.1 211461 D 364254 CDS YP_535085.1 90961169 3978074 213168..213884 1 NC_007929.1 COG3527 [Q] alpha-acetolactate decarboxylase; alpha-acetolactate decarboxylase 213884 alsD 3978074 alsD Lactobacillus salivarius UCC118 alpha-acetolactate decarboxylase YP_535085.1 213168 D 364254 CDS YP_535086.1 90961170 3978075 214228..215679 1 NC_007929.1 COG0531 [E] Amino acid transporters; lysine-specific permease 215679 3978075 LSL_0188 Lactobacillus salivarius UCC118 lysine-specific permease YP_535086.1 214228 D 364254 CDS YP_535087.1 90961171 3978076 215973..217250 1 NC_007929.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 217250 serS 3978076 serS Lactobacillus salivarius UCC118 seryl-tRNA synthetase YP_535087.1 215973 D 364254 CDS YP_535088.1 90961172 3978040 224035..224985 1 NC_007929.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 224985 pyrB 3978040 pyrB Lactobacillus salivarius UCC118 aspartate carbamoyltransferase catalytic subunit YP_535088.1 224035 D 364254 CDS YP_535089.1 90961173 3978041 224985..226274 1 NC_007929.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 226274 pyrC 3978041 pyrC Lactobacillus salivarius UCC118 dihydroorotase YP_535089.1 224985 D 364254 CDS YP_535090.1 90961174 3978042 226274..227362 1 NC_007929.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 227362 carA 3978042 carA Lactobacillus salivarius UCC118 carbamoyl phosphate synthase small subunit YP_535090.1 226274 D 364254 CDS YP_535091.1 90961175 3978043 227355..230540 1 NC_007929.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 230540 carB 3978043 carB Lactobacillus salivarius UCC118 carbamoyl phosphate synthase large subunit YP_535091.1 227355 D 364254 CDS YP_535092.1 90961176 3978044 230559..231503 1 NC_007929.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 231503 pyrD 3978044 pyrD Lactobacillus salivarius UCC118 dihydroorotate dehydrogenase 1B YP_535092.1 230559 D 364254 CDS YP_535093.1 90961177 3978046 231806..232273 1 NC_007929.1 COG4463 [K] Transcriptional repressor of class III stress genes; transcriptional regulator ctsR 232273 3978046 LSL_0195 Lactobacillus salivarius UCC118 transcriptional regulator ctsR YP_535093.1 231806 D 364254 CDS YP_535094.1 90961178 3978047 232289..234781 1 NC_007929.1 COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; negative regulator of genetic competence 234781 clpC 3978047 clpC Lactobacillus salivarius UCC118 negative regulator of genetic competence YP_535094.1 232289 D 364254 CDS YP_535095.1 90961179 3978048 235025..238624 1 NC_007929.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 238624 rpoB 3978048 rpoB Lactobacillus salivarius UCC118 DNA-directed RNA polymerase subunit beta YP_535095.1 235025 D 364254 CDS YP_535096.1 90961180 3978049 238653..242318 1 NC_007929.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 242318 rpoC 3978049 rpoC Lactobacillus salivarius UCC118 DNA-directed RNA polymerase subunit beta' YP_535096.1 238653 D 364254 CDS YP_535097.1 90961181 3978050 complement(242423..243079) 1 NC_007929.1 COG1989 [NOU] type II secretory pathway, prepilin signal peptidase PulO and related peptidases; type IV prepilin leader peptidase 243079 pilD 3978050 pilD Lactobacillus salivarius UCC118 type IV prepilin leader peptidase YP_535097.1 242423 R 364254 CDS YP_535098.1 90961182 3978051 243364..243777 1 NC_007929.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 243777 rpsL 3978051 rpsL Lactobacillus salivarius UCC118 30S ribosomal protein S12 YP_535098.1 243364 D 364254 CDS YP_535099.1 90961183 3978052 243812..244282 1 NC_007929.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 244282 rpsG 3978052 rpsG Lactobacillus salivarius UCC118 30S ribosomal protein S7 YP_535099.1 243812 D 364254 CDS YP_535100.1 90961184 3978053 244403..246496 1 NC_007929.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 246496 efg 3978053 efg Lactobacillus salivarius UCC118 elongation factor G YP_535100.1 244403 D 364254 CDS YP_535101.1 90961185 3978054 246600..247331 1 NC_007929.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 247331 sir2 3978054 sir2 Lactobacillus salivarius UCC118 NAD-dependent deacetylase YP_535101.1 246600 D 364254 CDS YP_535102.1 90961186 3978055 247349..248533 1 NC_007929.1 COG1168 [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase class I and II 248533 3978055 LSL_0204 Lactobacillus salivarius UCC118 aminotransferase class I and II YP_535102.1 247349 D 364254 CDS YP_535103.1 90961187 3978056 248688..249377 1 NC_007929.1 COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 249377 3978056 LSL_0205 Lactobacillus salivarius UCC118 two-component response regulator YP_535103.1 248688 D 364254 CDS YP_535104.1 90961188 3978057 249405..250556 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; two component system histidine kinase 250556 baeS 3978057 baeS Lactobacillus salivarius UCC118 two component system histidine kinase YP_535104.1 249405 D 364254 CDS YP_535105.1 90961189 3978027 253676..254545 1 NC_007929.1 COG2017 [G] Galactose mutarotase and related enzymes; galactose mutarotase-like 254545 3978027 LSL_0207 Lactobacillus salivarius UCC118 galactose mutarotase-like YP_535105.1 253676 D 364254 CDS YP_535106.1 90961190 3978028 254666..255835 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; hypothetical protein 255835 3978028 LSL_0208 Lactobacillus salivarius UCC118 hypothetical protein YP_535106.1 254666 D 364254 CDS YP_535107.1 90961191 3978029 255956..257716 1 NC_007929.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 257716 dxs 3978029 dxs Lactobacillus salivarius UCC118 1-deoxy-D-xylulose-5-phosphate synthase YP_535107.1 255956 D 364254 CDS YP_535108.1 90961192 3978030 257836..259821 1 NC_007929.1 COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 259821 3978030 LSL_0210 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535108.1 257836 D 364254 CDS YP_535109.1 90961193 3978031 259832..260482 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 260482 3978031 LSL_0211 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_535109.1 259832 D 364254 CDS YP_535110.1 90961194 3978032 260504..262237 1 NC_007929.1 COG1132 [V] ABC-type multidrug transport system, ATPase and permease components; multidrug ABC transporter permease/ATP-binding protein 262237 3978032 LSL_0212 Lactobacillus salivarius UCC118 multidrug ABC transporter permease/ATP-binding protein YP_535110.1 260504 D 364254 CDS YP_535111.1 90961195 3978035 265057..266436 1 NC_007929.1 COG2110 [R] Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1; ATPase associated with chromosome architecture/replication 266436 3978035 LSL_0213 Lactobacillus salivarius UCC118 ATPase associated with chromosome architecture/replication YP_535111.1 265057 D 364254 CDS YP_535112.1 90961196 3978036 266536..267093 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; LemA protein 267093 3978036 LSL_0214 Lactobacillus salivarius UCC118 LemA protein YP_535112.1 266536 D 364254 CDS YP_535113.1 90961197 3978037 267105..267992 1 NC_007929.1 metalloprotease; heat shock protein HtpX 267992 htpX 3978037 htpX Lactobacillus salivarius UCC118 heat shock protein HtpX YP_535113.1 267105 D 364254 CDS YP_535114.1 90961198 3978039 complement(268239..270506) 1 NC_007929.1 COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase 270506 rep 3978039 rep Lactobacillus salivarius UCC118 ATP-dependent DNA helicase YP_535114.1 268239 R 364254 CDS YP_535115.1 90961199 3977589 complement(270630..271655) 1 NC_007929.1 COG0053 [P] Predicted Co/Zn/Cd cation transporters; cobalt-zinc-cadmium resistance protein 271655 czcD 3977589 czcD Lactobacillus salivarius UCC118 cobalt-zinc-cadmium resistance protein YP_535115.1 270630 R 364254 CDS YP_535116.1 90961200 3977590 271973..272992 1 NC_007929.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 272992 trpS 3977590 trpS Lactobacillus salivarius UCC118 tryptophanyl-tRNA synthetase II YP_535116.1 271973 D 364254 CDS YP_535117.1 90961201 3977591 273081..274010 1 NC_007929.1 COG0248 [FP] Exopolyphosphatase; exopolyphosphatase 274010 gppA 3977591 gppA Lactobacillus salivarius UCC118 exopolyphosphatase YP_535117.1 273081 D 364254 CDS YP_535118.1 90961202 3977592 274135..274860 1 NC_007929.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 274860 3977592 LSL_0220 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535118.1 274135 D 364254 CDS YP_535119.1 90961203 3977593 274863..275975 1 NC_007929.1 COG0842 [V] ABC-type multidrug transport system, permease component; ABC transporter permease 275975 3977593 LSL_0221 Lactobacillus salivarius UCC118 ABC transporter permease YP_535119.1 274863 D 364254 CDS YP_535120.1 90961204 3977594 275988..276635 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 276635 3977594 LSL_0222 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_535120.1 275988 D 364254 CDS YP_535121.1 90961205 3977595 complement(276778..277581) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein 277581 3977595 LSL_0223 Lactobacillus salivarius UCC118 amino acid ABC transporter substrate-binding protein YP_535121.1 276778 R 364254 CDS YP_535122.1 90961206 3977596 277661..278926 1 NC_007929.1 COG1257 [I] Hydroxymethylglutaryl-CoA reductase; 3-hydroxy-3-methylglutaryl-coenzyme A reductase / 3-hydroxy-3-methylglutaryl-coenzyme Auctase 278926 3977596 LSL_0224 Lactobacillus salivarius UCC118 3-hydroxy-3-methylglutaryl-coenzyme A reductase / 3-hydroxy-3-methylglutaryl-coenzyme Auctase YP_535122.1 277661 D 364254 CDS YP_535123.1 90961207 3977597 278926..279882 1 NC_007929.1 IpaB/EvcA family protein 279882 3977597 LSL_0225 Lactobacillus salivarius UCC118 IpaB/EvcA family protein YP_535123.1 278926 D 364254 CDS YP_535124.1 90961208 3977598 279986..282013 1 NC_007929.1 COG0143 [J] Methionyl-tRNA synthetase; methionyl-tRNA synthetase / protein secretion chaperonin CsaA 282013 metG 3977598 metG Lactobacillus salivarius UCC118 methionyl-tRNA synthetase / protein secretion chaperonin CsaA YP_535124.1 279986 D 364254 CDS YP_535125.1 90961209 3977599 282147..282917 1 NC_007929.1 COG0084 [L] Mg-dependent DNase; TatD family deoxyribonuclease 282917 tatD 3977599 tatD Lactobacillus salivarius UCC118 TatD family deoxyribonuclease YP_535125.1 282147 D 364254 CDS YP_535126.1 90961210 3977600 282928..283485 1 NC_007929.1 COG1658 [L] Small primase-like proteins (Toprim domain); ribonuclease M5 283485 3977600 LSL_0228 Lactobacillus salivarius UCC118 ribonuclease M5 YP_535126.1 282928 D 364254 CDS YP_535127.1 90961211 3977601 283497..284387 1 NC_007929.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 284387 ksgA 3977601 ksgA Lactobacillus salivarius UCC118 dimethyladenosine transferase YP_535127.1 283497 D 364254 CDS YP_535128.1 90961212 3977602 284475..284708 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; VEG protein 284708 3977602 LSL_0230 Lactobacillus salivarius UCC118 VEG protein YP_535128.1 284475 D 364254 CDS YP_535129.1 90961213 3977603 284804..285652 1 NC_007929.1 COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; hypothetical protein 285652 3977603 LSL_0231 Lactobacillus salivarius UCC118 hypothetical protein YP_535129.1 284804 D 364254 CDS YP_535130.1 90961214 3977604 285665..286783 1 NC_007929.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 286783 avtA 3977604 avtA Lactobacillus salivarius UCC118 transaminase YP_535130.1 285665 D 364254 CDS YP_535131.1 90961215 3977605 286827..287297 1 NC_007929.1 COG1438 [K] Arginine repressor; arginine repressor ArgR 287297 argR 3977605 argR Lactobacillus salivarius UCC118 arginine repressor ArgR YP_535131.1 286827 D 364254 CDS YP_535132.1 90961216 3977606 complement(287336..288205) 1 NC_007929.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 288205 ipk 3977606 ipk Lactobacillus salivarius UCC118 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_535132.1 287336 R 364254 CDS YP_535133.1 90961217 3977607 288421..289728 1 NC_007929.1 COG0004 [P] Ammonia permease; ammonium transporter 289728 amtB 3977607 amtB Lactobacillus salivarius UCC118 ammonium transporter YP_535133.1 288421 D 364254 CDS YP_535134.1 90961218 3976912 complement(289941..291086) 1 NC_007929.1 COG0582 [L] Integrase; phage integrase 291086 xerC 3976912 xerC Lactobacillus salivarius UCC118 phage integrase YP_535134.1 289941 R 364254 CDS YP_535135.1 90961219 3976913 complement(291235..291630) 1 NC_007929.1 hypothetical protein 291630 3976913 LSL_0237 Lactobacillus salivarius UCC118 hypothetical protein YP_535135.1 291235 R 364254 CDS YP_535136.1 90961220 3976914 complement(291510..291944) 1 NC_007929.1 hypothetical protein 291944 3976914 LSL_0238 Lactobacillus salivarius UCC118 hypothetical protein YP_535136.1 291510 R 364254 CDS YP_535137.1 90961221 3976915 complement(291941..292384) 1 NC_007929.1 hypothetical protein 292384 3976915 LSL_0239 Lactobacillus salivarius UCC118 hypothetical protein YP_535137.1 291941 R 364254 CDS YP_535138.1 90961222 3976916 complement(292377..293300) 1 NC_007929.1 COG0455 [D] ATPases involved in chromosome partitioning; cII-like protein, phage associated 293300 3976916 LSL_0240 Lactobacillus salivarius UCC118 cII-like protein, phage associated YP_535138.1 292377 R 364254 CDS YP_535139.1 90961223 3976917 complement(293385..293603) 1 NC_007929.1 hypothetical protein 293603 3976917 LSL_0241 Lactobacillus salivarius UCC118 hypothetical protein YP_535139.1 293385 R 364254 CDS YP_535140.1 90961224 3976918 complement(293709..294485) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; cI-like repressor, phage associated 294485 3976918 LSL_0242 Lactobacillus salivarius UCC118 cI-like repressor, phage associated YP_535140.1 293709 R 364254 CDS YP_535141.1 90961225 3976919 294545..294694 1 NC_007929.1 hypothetical protein 294694 3976919 LSL_0243 Lactobacillus salivarius UCC118 hypothetical protein YP_535141.1 294545 D 364254 CDS YP_535142.1 90961226 3976920 295016..295222 1 NC_007929.1 hypothetical protein 295222 3976920 LSL_0244 Lactobacillus salivarius UCC118 hypothetical protein YP_535142.1 295016 D 364254 CDS YP_535143.1 90961227 3976921 295260..295475 1 NC_007929.1 hypothetical protein 295475 3976921 LSL_0245 Lactobacillus salivarius UCC118 hypothetical protein YP_535143.1 295260 D 364254 CDS YP_535144.1 90961228 3976922 complement(295477..296082) 1 NC_007929.1 hypothetical protein 296082 3976922 LSL_0246 Lactobacillus salivarius UCC118 hypothetical protein YP_535144.1 295477 R 364254 CDS YP_535145.1 90961229 3976923 296306..296497 1 NC_007929.1 DNA binding protein, phage associated 296497 3976923 LSL_0247 Lactobacillus salivarius UCC118 DNA binding protein, phage associated YP_535145.1 296306 D 364254 CDS YP_535146.1 90961230 3976924 296500..296640 1 NC_007929.1 hypothetical protein 296640 3976924 LSL_0248 Lactobacillus salivarius UCC118 hypothetical protein YP_535146.1 296500 D 364254 CDS YP_535147.1 90961231 3976925 complement(296633..296806) 1 NC_007929.1 hypothetical protein 296806 3976925 LSL_0249 Lactobacillus salivarius UCC118 hypothetical protein YP_535147.1 296633 R 364254 CDS YP_535148.1 90961232 3976926 296879..297070 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; Cro-like protein, phage associated 297070 cro 3976926 cro Lactobacillus salivarius UCC118 Cro-like protein, phage associated YP_535148.1 296879 D 364254 CDS YP_535149.1 90961233 3976927 297109..297837 1 NC_007929.1 COG3645 [S] Uncharacterized phage-encoded protein; phage antirepressor protein 297837 3976927 LSL_0251 Lactobacillus salivarius UCC118 phage antirepressor protein YP_535149.1 297109 D 364254 CDS YP_535150.1 90961234 3976928 297864..298049 1 NC_007929.1 hypothetical protein 298049 3976928 LSL_0252 Lactobacillus salivarius UCC118 hypothetical protein YP_535150.1 297864 D 364254 CDS YP_535151.1 90961235 3976929 298348..298527 1 NC_007929.1 hypothetical protein 298527 3976929 LSL_0253 Lactobacillus salivarius UCC118 hypothetical protein YP_535151.1 298348 D 364254 CDS YP_535152.1 90961236 3976930 298520..298657 1 NC_007929.1 hypothetical protein 298657 3976930 LSL_0254 Lactobacillus salivarius UCC118 hypothetical protein YP_535152.1 298520 D 364254 CDS YP_535153.1 90961237 3976856 298644..298880 1 NC_007929.1 hypothetical protein 298880 3976856 LSL_0255 Lactobacillus salivarius UCC118 hypothetical protein YP_535153.1 298644 D 364254 CDS YP_535154.1 90961238 3976857 298873..299589 1 NC_007929.1 hypothetical protein 299589 3976857 LSL_0256 Lactobacillus salivarius UCC118 hypothetical protein YP_535154.1 298873 D 364254 CDS YP_535155.1 90961239 3976858 299582..300565 1 NC_007929.1 replisome organizer, phage associated 300565 3976858 LSL_0257 Lactobacillus salivarius UCC118 replisome organizer, phage associated YP_535155.1 299582 D 364254 CDS YP_535156.1 90961240 3976859 300562..300765 1 NC_007929.1 hypothetical protein 300765 3976859 LSL_0258 Lactobacillus salivarius UCC118 hypothetical protein YP_535156.1 300562 D 364254 CDS YP_535157.1 90961241 3976860 300769..301035 1 NC_007929.1 hypothetical protein 301035 3976860 LSL_0259 Lactobacillus salivarius UCC118 hypothetical protein YP_535157.1 300769 D 364254 CDS YP_535158.1 90961242 3976861 301016..301432 1 NC_007929.1 replication terminator protein, phage associated 301432 3976861 LSL_0260 Lactobacillus salivarius UCC118 replication terminator protein, phage associated YP_535158.1 301016 D 364254 CDS YP_535159.1 90961243 3976862 301437..302165 1 NC_007929.1 hypothetical protein 302165 3976862 LSL_0261 Lactobacillus salivarius UCC118 hypothetical protein YP_535159.1 301437 D 364254 CDS YP_535160.1 90961244 3976863 302158..302382 1 NC_007929.1 hypothetical protein 302382 3976863 LSL_0262 Lactobacillus salivarius UCC118 hypothetical protein YP_535160.1 302158 D 364254 CDS YP_535161.1 90961245 3976864 302384..302581 1 NC_007929.1 hypothetical protein 302581 3976864 LSL_0263 Lactobacillus salivarius UCC118 hypothetical protein YP_535161.1 302384 D 364254 CDS YP_535162.1 90961246 3976865 302587..302916 1 NC_007929.1 hypothetical protein 302916 3976865 LSL_0264 Lactobacillus salivarius UCC118 hypothetical protein YP_535162.1 302587 D 364254 CDS YP_535163.1 90961247 3976866 302917..303093 1 NC_007929.1 hypothetical protein 303093 3976866 LSL_0265 Lactobacillus salivarius UCC118 hypothetical protein YP_535163.1 302917 D 364254 CDS YP_535164.1 90961248 3976867 303160..303522 1 NC_007929.1 hypothetical protein 303522 3976867 LSL_0266 Lactobacillus salivarius UCC118 hypothetical protein YP_535164.1 303160 D 364254 CDS YP_535165.1 90961249 3976868 303512..303745 1 NC_007929.1 hypothetical protein 303745 3976868 LSL_0267 Lactobacillus salivarius UCC118 hypothetical protein YP_535165.1 303512 D 364254 CDS YP_535166.1 90961250 3976869 303759..303986 1 NC_007929.1 hypothetical protein 303986 3976869 LSL_0268 Lactobacillus salivarius UCC118 hypothetical protein YP_535166.1 303759 D 364254 CDS YP_535167.1 90961251 3976870 304471..304713 1 NC_007929.1 hypothetical protein 304713 3976870 LSL_0270 Lactobacillus salivarius UCC118 hypothetical protein YP_535167.1 304471 D 364254 CDS YP_535168.1 90961252 3976871 304728..305168 1 NC_007929.1 hypothetical protein 305168 3976871 LSL_0271 Lactobacillus salivarius UCC118 hypothetical protein YP_535168.1 304728 D 364254 CDS YP_535169.1 90961253 3976872 305179..305460 1 NC_007929.1 hypothetical protein 305460 3976872 LSL_0272 Lactobacillus salivarius UCC118 hypothetical protein YP_535169.1 305179 D 364254 CDS YP_535170.1 90961254 3976873 305478..305660 1 NC_007929.1 hypothetical protein 305660 3976873 LSL_0273 Lactobacillus salivarius UCC118 hypothetical protein YP_535170.1 305478 D 364254 CDS YP_535171.1 90961255 3976874 305735..306175 1 NC_007929.1 hypothetical protein 306175 3976874 LSL_0274 Lactobacillus salivarius UCC118 hypothetical protein YP_535171.1 305735 D 364254 CDS YP_535172.1 90961256 3977133 306272..306517 1 NC_007929.1 hypothetical protein 306517 3977133 LSL_0275 Lactobacillus salivarius UCC118 hypothetical protein YP_535172.1 306272 D 364254 CDS YP_535173.1 90961257 3977134 306504..306944 1 NC_007929.1 hypothetical protein 306944 3977134 LSL_0276 Lactobacillus salivarius UCC118 hypothetical protein YP_535173.1 306504 D 364254 CDS YP_535174.1 90961258 3977135 307201..307863 1 NC_007929.1 DNA packaging, phage associated 307863 3977135 LSL_0277 Lactobacillus salivarius UCC118 DNA packaging, phage associated YP_535174.1 307201 D 364254 CDS YP_535175.1 90961259 3977136 307904..308056 1 NC_007929.1 hypothetical protein 308056 3977136 LSL_0278 Lactobacillus salivarius UCC118 hypothetical protein YP_535175.1 307904 D 364254 CDS YP_535176.1 90961260 3977137 308058..308588 1 NC_007929.1 COG1403 [V] Restriction endonuclease; phage endonuclease 308588 mcrA 3977137 mcrA Lactobacillus salivarius UCC118 phage endonuclease YP_535176.1 308058 D 364254 CDS YP_535177.1 90961261 3977138 308767..309240 1 NC_007929.1 COG3728 [L] phage terminase, small subunit; phage terminase small subunit 309240 3977138 LSL_0280 Lactobacillus salivarius UCC118 phage terminase small subunit YP_535177.1 308767 D 364254 CDS YP_535178.1 90961262 3977139 309240..311123 1 NC_007929.1 COG4626 [R] phage terminase-like protein, large subunit; terminase large subunit 311123 3977139 LSL_0281 Lactobacillus salivarius UCC118 terminase large subunit YP_535178.1 309240 D 364254 CDS YP_535179.1 90961263 3977140 311113..311307 1 NC_007929.1 phage head-tail joining protein 311307 3977140 LSL_0282 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535179.1 311113 D 364254 CDS YP_535180.1 90961264 3977141 311307..312482 1 NC_007929.1 COG4672 [S] phage-related protein; portal protein 312482 3977141 LSL_0283 Lactobacillus salivarius UCC118 portal protein YP_535180.1 311307 D 364254 CDS YP_535181.1 90961265 3977142 312463..313182 1 NC_007929.1 COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 313182 clpP 3977142 clpP Lactobacillus salivarius UCC118 ATP-dependent Clp protease proteolytic subunit YP_535181.1 312463 D 364254 CDS YP_535182.1 90961266 3977143 313172..314368 1 NC_007929.1 major head protein 314368 3977143 LSL_0285 Lactobacillus salivarius UCC118 major head protein YP_535182.1 313172 D 364254 CDS YP_535183.1 90961267 3977144 314380..314703 1 NC_007929.1 DNA packaging, phage associated 314703 3977144 LSL_0286 Lactobacillus salivarius UCC118 DNA packaging, phage associated YP_535183.1 314380 D 364254 CDS YP_535184.1 90961268 3977145 314696..315052 1 NC_007929.1 phage head-tail joining protein 315052 3977145 LSL_0287 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535184.1 314696 D 364254 CDS YP_535185.1 90961269 3977146 315045..315437 1 NC_007929.1 phage head-tail joining protein 315437 3977146 LSL_0288 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535185.1 315045 D 364254 CDS YP_535186.1 90961270 3977147 315437..315814 1 NC_007929.1 phage tail protein 315814 3977147 LSL_0289 Lactobacillus salivarius UCC118 phage tail protein YP_535186.1 315437 D 364254 CDS YP_535187.1 90961271 3977148 315816..316520 1 NC_007929.1 phage major tail protein 316520 3977148 LSL_0290 Lactobacillus salivarius UCC118 phage major tail protein YP_535187.1 315816 D 364254 CDS YP_535188.1 90961272 3977149 316570..316968 1 NC_007929.1 hypothetical protein 316968 3977149 LSL_0291 Lactobacillus salivarius UCC118 hypothetical protein YP_535188.1 316570 D 364254 CDS YP_535189.1 90961273 3977150 316971..317177 1 NC_007929.1 hypothetical protein 317177 3977150 LSL_0292 Lactobacillus salivarius UCC118 hypothetical protein YP_535189.1 316971 D 364254 CDS YP_535190.1 90961274 3977151 317225..317638 1 NC_007929.1 hypothetical protein 317638 3977151 LSL_0293 Lactobacillus salivarius UCC118 hypothetical protein YP_535190.1 317225 D 364254 CDS YP_535191.1 90961275 3977152 317693..321418 1 NC_007929.1 COG5283 [S] phage-related tail protein; phage tail tape mesure 321418 3977152 LSL_0294 Lactobacillus salivarius UCC118 phage tail tape mesure YP_535191.1 317693 D 364254 CDS YP_535192.1 90961276 3977316 321431..322258 1 NC_007929.1 hypothetical protein 322258 3977316 LSL_0295 Lactobacillus salivarius UCC118 hypothetical protein YP_535192.1 321431 D 364254 CDS YP_535193.1 90961277 3977317 322274..324586 1 NC_007929.1 COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase); phage lysin 324586 3977317 LSL_0296 Lactobacillus salivarius UCC118 phage lysin YP_535193.1 322274 D 364254 CDS YP_535194.1 90961278 3977318 324579..324917 1 NC_007929.1 hypothetical protein 324917 3977318 LSL_0297 Lactobacillus salivarius UCC118 hypothetical protein YP_535194.1 324579 D 364254 CDS YP_535195.1 90961279 3977319 325026..326372 1 NC_007929.1 hypothetical protein 326372 3977319 LSL_0298 Lactobacillus salivarius UCC118 hypothetical protein YP_535195.1 325026 D 364254 CDS YP_535196.1 90961280 3977320 326553..326975 1 NC_007929.1 hypothetical protein 326975 3977320 LSL_0299 Lactobacillus salivarius UCC118 hypothetical protein YP_535196.1 326553 D 364254 CDS YP_535197.1 90961281 3977321 326989..327396 1 NC_007929.1 hypothetical protein 327396 3977321 LSL_0300 Lactobacillus salivarius UCC118 hypothetical protein YP_535197.1 326989 D 364254 CDS YP_535198.1 90961282 3977322 327399..327581 1 NC_007929.1 hypothetical protein 327581 3977322 LSL_0301 Lactobacillus salivarius UCC118 hypothetical protein YP_535198.1 327399 D 364254 CDS YP_535199.1 90961283 3977323 327634..327939 1 NC_007929.1 hypothetical protein 327939 3977323 LSL_0302 Lactobacillus salivarius UCC118 hypothetical protein YP_535199.1 327634 D 364254 CDS YP_535200.1 90961284 3977324 327936..328262 1 NC_007929.1 hypothetical protein 328262 3977324 LSL_0303 Lactobacillus salivarius UCC118 hypothetical protein YP_535200.1 327936 D 364254 CDS YP_535201.1 90961285 3977325 328274..329542 1 NC_007929.1 COG1388 [M] FOG: LysM repeat; phage lysin 329542 3977325 LSL_0304 Lactobacillus salivarius UCC118 phage lysin YP_535201.1 328274 D 364254 CDS YP_535202.1 90961286 3977326 complement(330044..331426) 1 NC_007929.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 331426 argH 3977326 argH Lactobacillus salivarius UCC118 argininosuccinate lyase YP_535202.1 330044 R 364254 CDS YP_535203.1 90961287 3977327 complement(331450..332661) 1 NC_007929.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 332661 argG 3977327 argG Lactobacillus salivarius UCC118 argininosuccinate synthase YP_535203.1 331450 R 364254 CDS YP_535204.1 90961288 3977328 333223..334398 1 NC_007929.1 COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase; aromatic amino acid aminotransferase 334398 araT 3977328 araT Lactobacillus salivarius UCC118 aromatic amino acid aminotransferase YP_535204.1 333223 D 364254 CDS YP_535205.1 90961289 3977329 334414..335403 1 NC_007929.1 COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 335403 ldhA 3977329 ldhA Lactobacillus salivarius UCC118 D-lactate dehydrogenase YP_535205.1 334414 D 364254 CDS YP_535206.1 90961290 3977330 335422..336471 1 NC_007929.1 COG3641 [R] Predicted membrane protein, toxin regulator; hypothetical protein 336471 3977330 LSL_0309 Lactobacillus salivarius UCC118 hypothetical protein YP_535206.1 335422 D 364254 CDS YP_535207.1 90961291 3977331 336947..340576 1 NC_007929.1 COG3652 [S] Predicted outer membrane protein; mucus binding protein 340576 mbp2 3977331 mbp2 Lactobacillus salivarius UCC118 mucus binding protein YP_535207.1 336947 D 364254 CDS YP_535208.1 90961292 3977332 complement(340699..341988) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 341988 3977332 LSL_0312 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535208.1 340699 R 364254 CDS YP_535209.1 90961293 3977333 complement(342157..343248) 1 NC_007929.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 343248 asd 3977333 asd Lactobacillus salivarius UCC118 aspartate-semialdehyde dehydrogenase YP_535209.1 342157 R 364254 CDS YP_535210.1 90961294 3977334 343478..343876 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 343876 3977334 LSL_0314 Lactobacillus salivarius UCC118 MerR family transcriptional regulator YP_535210.1 343478 D 364254 CDS YP_535211.1 90961295 3977550 344198..345037 1 NC_007929.1 COG0503 [F] Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; pur operon repressor 345037 purR 3977550 purR Lactobacillus salivarius UCC118 pur operon repressor YP_535211.1 344198 D 364254 CDS YP_535212.1 90961296 3977551 345168..346385 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; macrolide-efflux protein 346385 3977551 LSL_0316 Lactobacillus salivarius UCC118 macrolide-efflux protein YP_535212.1 345168 D 364254 CDS YP_535213.1 90961297 3977552 346528..347937 1 NC_007929.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 347937 glmU 3977552 glmU Lactobacillus salivarius UCC118 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_535213.1 346528 D 364254 CDS YP_535214.1 90961298 3977553 348028..349005 1 NC_007929.1 COG0462 [FE] Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 349005 prsA 3977553 prsA Lactobacillus salivarius UCC118 ribose-phosphate pyrophosphokinase YP_535214.1 348028 D 364254 CDS YP_535215.1 90961299 3977554 349079..349603 1 NC_007929.1 COG1670 [J] acetyltransferases, including N-acetylases of ribosomal proteins; ribosomal-protein-serine acetyltransferase 349603 rimL 3977554 rimL Lactobacillus salivarius UCC118 ribosomal-protein-serine acetyltransferase YP_535215.1 349079 D 364254 CDS YP_535216.1 90961300 3977555 complement(349754..350593) 1 NC_007929.1 COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase 350593 3977555 LSL_0320 Lactobacillus salivarius UCC118 2,5-diketo-D-gluconic acid reductase YP_535216.1 349754 R 364254 CDS YP_535217.1 90961301 3977556 complement(350599..350835) 1 NC_007929.1 hypothetical protein 350835 3977556 LSL_0321 Lactobacillus salivarius UCC118 hypothetical protein YP_535217.1 350599 R 364254 CDS YP_535218.1 90961302 3977557 350978..351748 1 NC_007929.1 COG2820 [F] Uridine phosphorylase; phosphorylase Pnp/Udp family protein 351748 udp 3977557 udp Lactobacillus salivarius UCC118 phosphorylase Pnp/Udp family protein YP_535218.1 350978 D 364254 CDS YP_535219.1 90961303 3977558 351823..353445 1 NC_007929.1 COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 353445 3977558 LSL_0323 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535219.1 351823 D 364254 CDS YP_535220.1 90961304 3977559 353519..354178 1 NC_007929.1 COG2220 [R] Predicted Zn-dependent hydrolases of the beta-lactamase fold; metallo-beta-lactamase family protein 354178 3977559 LSL_0324 Lactobacillus salivarius UCC118 metallo-beta-lactamase family protein YP_535220.1 353519 D 364254 CDS YP_535221.1 90961305 3977560 complement(354228..355193) 1 NC_007929.1 COG0340 [H] Biotin-(acetyl-CoA carboxylase) ligase; biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase 355193 birA 3977560 birA Lactobacillus salivarius UCC118 biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase YP_535221.1 354228 R 364254 CDS YP_535222.1 90961306 3977561 355319..356422 1 NC_007929.1 COG5438 [S] Predicted multitransmembrane protein; hypothetical protein 356422 3977561 LSL_0326 Lactobacillus salivarius UCC118 hypothetical protein YP_535222.1 355319 D 364254 CDS YP_535223.1 90961307 3977562 356419..357168 1 NC_007929.1 COG5438 [S] Predicted multitransmembrane protein; hypothetical protein 357168 3977562 LSL_0327 Lactobacillus salivarius UCC118 hypothetical protein YP_535223.1 356419 D 364254 CDS YP_535224.1 90961308 3977563 357379..358413 1 NC_007929.1 hypothetical protein 358413 3977563 LSL_0328 Lactobacillus salivarius UCC118 hypothetical protein YP_535224.1 357379 D 364254 CDS YP_535225.1 90961309 3977564 358413..360020 1 NC_007929.1 COG0464 [O] ATPases of the AAA+ class; ATPases of the AAA+ class 360020 spoVK 3977564 spoVK Lactobacillus salivarius UCC118 ATPases of the AAA+ class YP_535225.1 358413 D 364254 CDS YP_535226.1 90961310 3977565 360024..360908 1 NC_007929.1 hypothetical protein 360908 3977565 LSL_0330 Lactobacillus salivarius UCC118 hypothetical protein YP_535226.1 360024 D 364254 CDS YP_535227.1 90961311 3977566 360871..361320 1 NC_007929.1 hypothetical protein 361320 3977566 LSL_0331 Lactobacillus salivarius UCC118 hypothetical protein YP_535227.1 360871 D 364254 CDS YP_535228.1 90961312 3977567 361325..363325 1 NC_007929.1 hypothetical protein 363325 3977567 LSL_0332 Lactobacillus salivarius UCC118 hypothetical protein YP_535228.1 361325 D 364254 CDS YP_535229.1 90961313 3977568 363318..365933 1 NC_007929.1 hypothetical protein 365933 3977568 LSL_0333 Lactobacillus salivarius UCC118 hypothetical protein YP_535229.1 363318 D 364254 CDS YP_535230.1 90961314 3977569 365987..367081 1 NC_007929.1 hypothetical protein 367081 3977569 LSL_0334 Lactobacillus salivarius UCC118 hypothetical protein YP_535230.1 365987 D 364254 CDS YP_535231.1 90961315 3977531 367099..367794 1 NC_007929.1 hypothetical protein 367794 3977531 LSL_0335 Lactobacillus salivarius UCC118 hypothetical protein YP_535231.1 367099 D 364254 CDS YP_535232.1 90961316 3977532 complement(367852..368319) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 368319 3977532 LSL_0336 Lactobacillus salivarius UCC118 hypothetical protein YP_535232.1 367852 R 364254 CDS YP_535233.1 90961317 3977533 complement(368383..369204) 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 369204 3977533 LSL_0337 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_535233.1 368383 R 364254 CDS YP_535234.1 90961318 3977534 complement(369220..370575) 1 NC_007929.1 COG1078 [R] HD superfamily phosphohydrolases; hydrolase 370575 3977534 LSL_0338 Lactobacillus salivarius UCC118 hydrolase YP_535234.1 369220 R 364254 CDS YP_535235.1 90961319 3977535 370767..371435 1 NC_007929.1 COG0518 [F] GMP synthase - Glutamine amidotransferase domain; glutamine-hydrolyzing; GMP synthase 371435 guaA 3977535 guaA Lactobacillus salivarius UCC118 GMP synthase YP_535235.1 370767 D 364254 CDS YP_535236.1 90961320 3977536 371538..371975 1 NC_007929.1 hypothetical protein 371975 3977536 LSL_0340 Lactobacillus salivarius UCC118 hypothetical protein YP_535236.1 371538 D 364254 CDS YP_535237.1 90961321 3977537 372021..372611 1 NC_007929.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 372611 rpoE 3977537 rpoE Lactobacillus salivarius UCC118 DNA-directed RNA polymerase subunit delta YP_535237.1 372021 D 364254 CDS YP_535238.1 90961322 3977538 372786..374384 1 NC_007929.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 374384 pyrG 3977538 pyrG Lactobacillus salivarius UCC118 CTP synthetase YP_535238.1 372786 D 364254 CDS YP_535239.1 90961323 3977539 374455..374655 1 NC_007929.1 hypothetical protein 374655 3977539 LSL_0343 Lactobacillus salivarius UCC118 hypothetical protein YP_535239.1 374455 D 364254 CDS YP_535240.1 90961324 3977540 374722..375282 1 NC_007929.1 hypothetical protein 375282 3977540 LSL_0344 Lactobacillus salivarius UCC118 hypothetical protein YP_535240.1 374722 D 364254 CDS YP_535241.1 90961325 3977541 375503..376774 1 NC_007929.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 376774 murA 3977541 murA Lactobacillus salivarius UCC118 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_535241.1 375503 D 364254 CDS YP_535242.1 90961326 3977542 376785..378068 1 NC_007929.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 378068 rho 3977542 rho Lactobacillus salivarius UCC118 transcription termination factor Rho YP_535242.1 376785 D 364254 CDS YP_535243.1 90961327 3977543 378175..378423 1 NC_007929.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 378423 rpmE2 3977543 rpmE2 Lactobacillus salivarius UCC118 50S ribosomal protein L31 type B YP_535243.1 378175 D 364254 CDS YP_535244.1 90961328 3977544 378509..379165 1 NC_007929.1 hypothetical protein 379165 3977544 LSL_0348 Lactobacillus salivarius UCC118 hypothetical protein YP_535244.1 378509 D 364254 CDS YP_535245.1 90961329 3977545 complement(379190..381556) 1 NC_007929.1 COG1199 [KL] Rad3-related DNA helicases; superfamily II DNA/RNA helicase 381556 srmB 3977545 srmB Lactobacillus salivarius UCC118 superfamily II DNA/RNA helicase YP_535245.1 379190 R 364254 CDS YP_535246.1 90961330 3977546 381839..382477 1 NC_007929.1 hypothetical protein 382477 3977546 LSL_0350 Lactobacillus salivarius UCC118 hypothetical protein YP_535246.1 381839 D 364254 CDS YP_535247.1 90961331 3977547 382495..383532 1 NC_007929.1 hypothetical protein 383532 3977547 LSL_0351 Lactobacillus salivarius UCC118 hypothetical protein YP_535247.1 382495 D 364254 CDS YP_535248.1 90961332 3977548 383543..385324 1 NC_007929.1 hypothetical protein 385324 3977548 LSL_0352 Lactobacillus salivarius UCC118 hypothetical protein YP_535248.1 383543 D 364254 CDS YP_535249.1 90961333 3977549 385489..386802 1 NC_007929.1 COG2252 [R] Permeases; guanine-hypoxanthine permease 386802 3977549 LSL_0353 Lactobacillus salivarius UCC118 guanine-hypoxanthine permease YP_535249.1 385489 D 364254 CDS YP_535250.1 90961334 3977950 386949..387719 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 387719 3977950 LSL_0354 Lactobacillus salivarius UCC118 hypothetical protein YP_535250.1 386949 D 364254 CDS YP_535251.1 90961335 3977951 387857..389227 1 NC_007929.1 COG0770 [M] UDP-N-acetylmuramyl pentapeptide synthase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 389227 murF 3977951 murF Lactobacillus salivarius UCC118 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_535251.1 387857 D 364254 CDS YP_535252.1 90961336 3977952 389363..390841 1 NC_007929.1 COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 390841 srmB 3977952 srmB Lactobacillus salivarius UCC118 ATP-dependent RNA helicase YP_535252.1 389363 D 364254 CDS YP_535253.1 90961337 3977953 390971..391378 1 NC_007929.1 COG0736 [I] Phosphopantetheinyl transferase (holo-ACP synthase); Holo-[acyl-carrier protein] synthase 391378 acpS 3977953 acpS Lactobacillus salivarius UCC118 Holo-[acyl-carrier protein] synthase YP_535253.1 390971 D 364254 CDS YP_535254.1 90961338 3977954 391397..392512 1 NC_007929.1 COG0787 [M] Alanine racemase; alanine racemase 392512 alr 3977954 alr Lactobacillus salivarius UCC118 alanine racemase YP_535254.1 391397 D 364254 CDS YP_535255.1 90961339 3977955 392559..392807 1 NC_007929.1 hypothetical protein 392807 3977955 LSL_0359 Lactobacillus salivarius UCC118 hypothetical protein YP_535255.1 392559 D 364254 CDS YP_535256.1 90961340 3977956 392823..393191 1 NC_007929.1 COG2337 [T] Growth inhibitor; PemK family transcriptional regulator 393191 3977956 LSL_0360 Lactobacillus salivarius UCC118 PemK family transcriptional regulator YP_535256.1 392823 D 364254 CDS YP_535257.1 90961341 3977957 complement(393233..394069) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 394069 3977957 LSL_0361 Lactobacillus salivarius UCC118 hypothetical protein YP_535257.1 393233 R 364254 CDS YP_535258.1 90961342 3977958 complement(394087..395178) 1 NC_007929.1 COG2404 [R] Predicted phosphohydrolase (DHH superfamily); phosphoesterase, DHH family protein 395178 3977958 LSL_0362 Lactobacillus salivarius UCC118 phosphoesterase, DHH family protein YP_535258.1 394087 R 364254 CDS YP_535259.1 90961343 3977959 complement(395291..395602) 1 NC_007929.1 COG0242 [J] N-formylmethionyl-tRNA deformylase; peptide deformylase 395602 def 3977959 def Lactobacillus salivarius UCC118 peptide deformylase YP_535259.1 395291 R 364254 CDS YP_535260.1 90961344 3977960 395701..396417 1 NC_007929.1 hypothetical protein 396417 3977960 LSL_0364 Lactobacillus salivarius UCC118 hypothetical protein YP_535260.1 395701 D 364254 CDS YP_535261.1 90961345 3977961 complement(396466..397395) 1 NC_007929.1 COG1597 [IR] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; hypothetical protein 397395 3977961 LSL_0365 Lactobacillus salivarius UCC118 hypothetical protein YP_535261.1 396466 R 364254 CDS YP_535262.1 90961346 3977962 397556..397783 1 NC_007929.1 COG4892 [R] Predicted heme/steroid binding protein; hypothetical protein 397783 3977962 LSL_0366 Lactobacillus salivarius UCC118 hypothetical protein YP_535262.1 397556 D 364254 CDS YP_535263.1 90961347 3977963 complement(397841..398419) 1 NC_007929.1 sigma-70 factor family protein 398419 3977963 LSL_0367 Lactobacillus salivarius UCC118 sigma-70 factor family protein YP_535263.1 397841 R 364254 CDS YP_535264.1 90961348 3977964 complement(398488..399291) 1 NC_007929.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 399291 recX 3977964 recX Lactobacillus salivarius UCC118 recombination regulator RecX YP_535264.1 398488 R 364254 CDS YP_535265.1 90961349 3977965 399377..400756 1 NC_007929.1 COG2265 [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (Uracil-5-) -methyltransferase 400756 trmA 3977965 trmA Lactobacillus salivarius UCC118 tRNA (Uracil-5-) -methyltransferase YP_535265.1 399377 D 364254 CDS YP_535266.1 90961350 3977966 400884..401429 1 NC_007929.1 COG3557 [J] Uncharacterized domain/protein associated with RNAses G and E; hypothetical protein 401429 3977966 LSL_0370 Lactobacillus salivarius UCC118 hypothetical protein YP_535266.1 400884 D 364254 CDS YP_535267.1 90961351 3977967 401530..402660 1 NC_007929.1 COG0628 [R] Predicted permease; hypothetical protein 402660 3977967 LSL_0371 Lactobacillus salivarius UCC118 hypothetical protein YP_535267.1 401530 D 364254 CDS YP_535268.1 90961352 3977968 402745..403761 1 NC_007929.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 403761 gpsA 3977968 gpsA Lactobacillus salivarius UCC118 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_535268.1 402745 D 364254 CDS YP_535269.1 90961353 3977969 403895..405337 1 NC_007929.1 COG1134 [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase component; teichoic acid translocation ATP-binding protein 405337 tagH 3977969 tagH Lactobacillus salivarius UCC118 teichoic acid translocation ATP-binding protein YP_535269.1 403895 D 364254 CDS YP_535270.1 90961354 3977970 405426..407003 1 NC_007929.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 407003 prfC 3977970 prfC Lactobacillus salivarius UCC118 peptide chain release factor 3 YP_535270.1 405426 D 364254 CDS YP_535271.1 90961355 3977971 407319..408092 1 NC_007929.1 hypothetical protein 408092 3977971 LSL_0375 Lactobacillus salivarius UCC118 hypothetical protein YP_535271.1 407319 D 364254 CDS YP_535272.1 90961356 3977972 408327..411350 1 NC_007929.1 COG3250 [G] beta-galactosidase/beta-glucuronidase; beta-galactosidase 411350 lacZ 3977972 lacZ Lactobacillus salivarius UCC118 beta-galactosidase YP_535272.1 408327 D 364254 CDS YP_535273.1 90961357 3977975 complement(415063..416061) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; galactose operon repressor 416061 galR 3977975 galR Lactobacillus salivarius UCC118 galactose operon repressor YP_535273.1 415063 R 364254 CDS YP_535274.1 90961358 3977976 416233..417396 1 NC_007929.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 417396 galK 3977976 galK Lactobacillus salivarius UCC118 galactokinase YP_535274.1 416233 D 364254 CDS YP_535275.1 90961359 3977977 417424..418419 1 NC_007929.1 COG1087 [M] UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 418419 galE 3977977 galE Lactobacillus salivarius UCC118 UDP-glucose 4-epimerase YP_535275.1 417424 D 364254 CDS YP_535276.1 90961360 3977978 418438..419925 1 NC_007929.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 419925 3977978 LSL_0383 Lactobacillus salivarius UCC118 galactose-1-phosphate uridylyltransferase YP_535276.1 418438 D 364254 CDS YP_535277.1 90961361 3977980 complement(422195..423235) 1 NC_007929.1 hypothetical protein 423235 3977980 LSL_0384 Lactobacillus salivarius UCC118 hypothetical protein YP_535277.1 422195 R 364254 CDS YP_535278.1 90961362 3977981 complement(423384..423659) 1 NC_007929.1 hypothetical protein 423659 3977981 LSL_0385 Lactobacillus salivarius UCC118 hypothetical protein YP_535278.1 423384 R 364254 CDS YP_535279.1 90961363 3977982 complement(423785..425977) 1 NC_007929.1 COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease ATP-binding subunit 425977 clpE 3977982 clpE Lactobacillus salivarius UCC118 ATP-dependent Clp protease ATP-binding subunit YP_535279.1 423785 R 364254 CDS YP_535280.1 90961364 3977983 426126..426320 1 NC_007929.1 hypothetical protein 426320 3977983 LSL_0387 Lactobacillus salivarius UCC118 hypothetical protein YP_535280.1 426126 D 364254 CDS YP_535281.1 90961365 3977984 426579..426845 1 NC_007929.1 COG1925 [G] Phosphotransferase system, HPr-related proteins; phosphocarrier protein HPr 426845 ptsH 3977984 ptsH Lactobacillus salivarius UCC118 phosphocarrier protein HPr YP_535281.1 426579 D 364254 CDS YP_535282.1 90961366 3977985 426845..428566 1 NC_007929.1 COG1080 [G] Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 428566 ptsI 3977985 ptsI Lactobacillus salivarius UCC118 phosphoenolpyruvate-protein phosphotransferase YP_535282.1 426845 D 364254 CDS YP_535283.1 90961367 3977986 428743..429942 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 429942 rfaG 3977986 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535283.1 428743 D 364254 CDS YP_535284.1 90961368 3976530 429945..430955 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 430955 rfaG 3976530 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535284.1 429945 D 364254 CDS YP_535285.1 90961369 3976531 430960..431979 1 NC_007929.1 COG0392 [S] Predicted integral membrane protein; hypothetical protein 431979 3976531 LSL_0392 Lactobacillus salivarius UCC118 hypothetical protein YP_535285.1 430960 D 364254 CDS YP_535286.1 90961370 3976532 432107..432340 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 432340 3976532 LSL_0393 Lactobacillus salivarius UCC118 hypothetical protein YP_535286.1 432107 D 364254 CDS YP_535287.1 90961371 3976533 432452..434521 1 NC_007929.1 COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; sulfatase family protein 434521 3976533 LSL_0394 Lactobacillus salivarius UCC118 sulfatase family protein YP_535287.1 432452 D 364254 CDS YP_535288.1 90961372 3977087 441138..442784 1 NC_007929.1 COG1866 [C] Phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase [ATP] 442784 pckA 3977087 pckA Lactobacillus salivarius UCC118 phosphoenolpyruvate carboxykinase [ATP] YP_535288.1 441138 D 364254 CDS YP_535289.1 90961373 3977088 442888..443649 1 NC_007929.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 443649 3977088 LSL_0396 Lactobacillus salivarius UCC118 adaptor protein YP_535289.1 442888 D 364254 CDS YP_535290.1 90961374 3977089 443698..444597 1 NC_007929.1 COG4469 [R] Competence protein; competence protein/transcription factor 444597 3977089 LSL_0397 Lactobacillus salivarius UCC118 competence protein/transcription factor YP_535290.1 443698 D 364254 CDS YP_535291.1 90961375 3977090 444695..446512 1 NC_007929.1 COG1164 [E] Oligoendopeptidase F; oligoendopeptidase F 446512 3977090 LSL_0398 Lactobacillus salivarius UCC118 oligoendopeptidase F YP_535291.1 444695 D 364254 CDS YP_535292.1 90961376 3977091 complement(446602..447207) 1 NC_007929.1 COG2761 [Q] Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis; hypothetical protein 447207 3977091 LSL_0399 Lactobacillus salivarius UCC118 hypothetical protein YP_535292.1 446602 R 364254 CDS YP_535293.1 90961377 3977092 447375..448229 1 NC_007929.1 COG0226 [P] ABC-type phosphate transport system, periplasmic component; phosphate-binding protein 448229 pstS 3977092 pstS Lactobacillus salivarius UCC118 phosphate-binding protein YP_535293.1 447375 D 364254 CDS YP_535294.1 90961378 3977093 448240..449157 1 NC_007929.1 COG0573 [P] ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 449157 pstC 3977093 pstC Lactobacillus salivarius UCC118 phosphate ABC transporter permease YP_535294.1 448240 D 364254 CDS YP_535295.1 90961379 3977094 449157..450047 1 NC_007929.1 COG0573 [P] ABC-type phosphate transport system, permease component; phosphate ABC transporter permease 450047 pstA 3977094 pstA Lactobacillus salivarius UCC118 phosphate ABC transporter permease YP_535295.1 449157 D 364254 CDS YP_535296.1 90961380 3977095 450052..450846 1 NC_007929.1 COG1117 [P] ABC-type phosphate transport system, ATPase component; phosphate ABC transporter ATP-binding protein 450846 pstB 3977095 pstB Lactobacillus salivarius UCC118 phosphate ABC transporter ATP-binding protein YP_535296.1 450052 D 364254 CDS YP_535297.1 90961381 3977096 450856..451611 1 NC_007929.1 COG1117 [P] ABC-type phosphate transport system, ATPase component; phosphate ABC transporter ATP-binding protein 451611 pstB 3977096 pstB Lactobacillus salivarius UCC118 phosphate ABC transporter ATP-binding protein YP_535297.1 450856 D 364254 CDS YP_535298.1 90961382 3977097 451624..452280 1 NC_007929.1 COG0704 [P] Phosphate uptake regulator; phosphate transporter PhoU 452280 phoU 3977097 phoU Lactobacillus salivarius UCC118 phosphate transporter PhoU YP_535298.1 451624 D 364254 CDS YP_535299.1 90961383 3977098 452407..453273 1 NC_007929.1 COG0191 [G] Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 453273 fba 3977098 fba Lactobacillus salivarius UCC118 fructose-bisphosphate aldolase YP_535299.1 452407 D 364254 CDS YP_535300.1 90961384 3977099 complement(453375..454664) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 454664 3977099 LSL_0407 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535300.1 453375 R 364254 CDS YP_535301.1 90961385 3977100 454692..454895 1 NC_007929.1 hypothetical protein 454895 3977100 LSL_0408 Lactobacillus salivarius UCC118 hypothetical protein YP_535301.1 454692 D 364254 CDS YP_535302.1 90961386 3977101 454914..455606 1 NC_007929.1 COG0700 [S] Uncharacterized membrane protein; hypothetical protein 455606 3977101 LSL_0409 Lactobacillus salivarius UCC118 hypothetical protein YP_535302.1 454914 D 364254 CDS YP_535303.1 90961387 3977102 455624..456313 1 NC_007929.1 COG0700 [S] Uncharacterized membrane protein; hypothetical protein 456313 3977102 LSL_0410 Lactobacillus salivarius UCC118 hypothetical protein YP_535303.1 455624 D 364254 CDS YP_535304.1 90961388 3977103 complement(456624..456977) 1 NC_007929.1 hypothetical protein 456977 3977103 LSL_0411 Lactobacillus salivarius UCC118 hypothetical protein YP_535304.1 456624 R 364254 CDS YP_535305.1 90961389 3977104 457041..457640 1 NC_007929.1 COG1272 [R] Predicted membrane protein, hemolysin III homolog; hypothetical protein 457640 3977104 LSL_0412 Lactobacillus salivarius UCC118 hypothetical protein YP_535305.1 457041 D 364254 CDS YP_535306.1 90961390 3977105 457759..458094 1 NC_007929.1 COG0583 [K] Transcriptional regulator; ArsR family transcriptional regulator 458094 3977105 LSL_0413 Lactobacillus salivarius UCC118 ArsR family transcriptional regulator YP_535306.1 457759 D 364254 CDS YP_535307.1 90961391 3977911 complement(458249..459538) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 459538 3977911 LSL_0414 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535307.1 458249 R 364254 CDS YP_535308.1 90961392 3977912 459722..460381 1 NC_007929.1 COG0328 [L] Ribonuclease HI; ribonuclease HI 460381 rnhA 3977912 rnhA Lactobacillus salivarius UCC118 ribonuclease HI YP_535308.1 459722 D 364254 CDS YP_535309.1 90961393 3977913 complement(460738..460896) 1 NC_007929.1 hypothetical protein 460896 3977913 LSL_0416 Lactobacillus salivarius UCC118 hypothetical protein YP_535309.1 460738 R 364254 CDS YP_535310.1 90961394 3977914 461276..461683 1 NC_007929.1 COG4768 [R] Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain; hypothetical protein 461683 3977914 LSL_0417 Lactobacillus salivarius UCC118 hypothetical protein YP_535310.1 461276 D 364254 CDS YP_535311.1 90961395 3977915 461706..462155 1 NC_007929.1 hypothetical protein 462155 3977915 LSL_0418 Lactobacillus salivarius UCC118 hypothetical protein YP_535311.1 461706 D 364254 CDS YP_535312.1 90961396 3977916 complement(462226..463329) 1 NC_007929.1 COG0006 [E] Xaa-Pro aminopeptidase; Xaa-Pro aminopeptidase 463329 pepQ 3977916 pepQ Lactobacillus salivarius UCC118 Xaa-Pro aminopeptidase YP_535312.1 462226 R 364254 CDS YP_535313.1 90961397 3977917 463530..464537 1 NC_007929.1 COG1522 [K] Transcriptional regulators; catabolite control protein A 464537 ccpA 3977917 ccpA Lactobacillus salivarius UCC118 catabolite control protein A YP_535313.1 463530 D 364254 CDS YP_535314.1 90961398 3977918 464631..465119 1 NC_007929.1 hypothetical protein 465119 3977918 LSL_0421 Lactobacillus salivarius UCC118 hypothetical protein YP_535314.1 464631 D 364254 CDS YP_535315.1 90961399 3977919 465226..465954 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 465954 3977919 LSL_0422 Lactobacillus salivarius UCC118 hypothetical protein YP_535315.1 465226 D 364254 CDS YP_535316.1 90961400 3977920 466078..467001 1 NC_007929.1 COG0524 [G] Sugar kinases, ribokinase family; ribokinase 467001 rbsK 3977920 rbsK Lactobacillus salivarius UCC118 ribokinase YP_535316.1 466078 D 364254 CDS YP_535317.1 90961401 3977921 467105..468088 1 NC_007929.1 COG2804 [NU] type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; ComG operon protein 1 468088 3977921 LSL_0424 Lactobacillus salivarius UCC118 ComG operon protein 1 YP_535317.1 467105 D 364254 CDS YP_535318.1 90961402 3977922 468024..469097 1 NC_007929.1 COG1459 [NU] type II secretory pathway, component PulF; ComG operon protein 2 469097 3977922 LSL_0425 Lactobacillus salivarius UCC118 ComG operon protein 2 YP_535318.1 468024 D 364254 CDS YP_535319.1 90961403 3977923 469097..469399 1 NC_007929.1 ComG operon protein 3 469399 3977923 LSL_0426 Lactobacillus salivarius UCC118 ComG operon protein 3 YP_535319.1 469097 D 364254 CDS YP_535320.1 90961404 3977924 469401..469823 1 NC_007929.1 hypothetical protein 469823 3977924 LSL_0427 Lactobacillus salivarius UCC118 hypothetical protein YP_535320.1 469401 D 364254 CDS YP_535321.1 90961405 3977925 469804..470058 1 NC_007929.1 hypothetical protein 470058 3977925 LSL_0428 Lactobacillus salivarius UCC118 hypothetical protein YP_535321.1 469804 D 364254 CDS YP_535322.1 90961406 3977926 470024..470194 1 NC_007929.1 hypothetical protein 470194 3977926 LSL_0429 Lactobacillus salivarius UCC118 hypothetical protein YP_535322.1 470024 D 364254 CDS YP_535323.1 90961407 3977927 470228..470488 1 NC_007929.1 hypothetical protein 470488 3977927 LSL_0430 Lactobacillus salivarius UCC118 hypothetical protein YP_535323.1 470228 D 364254 CDS YP_535324.1 90961408 3977928 470485..470766 1 NC_007929.1 hypothetical protein 470766 3977928 LSL_0431 Lactobacillus salivarius UCC118 hypothetical protein YP_535324.1 470485 D 364254 CDS YP_535325.1 90961409 3977929 470841..471881 1 NC_007929.1 COG0827 [L] Adenine-specific DNA methylase; adenine-specific methyltransferase 471881 3977929 LSL_0432 Lactobacillus salivarius UCC118 adenine-specific methyltransferase YP_535325.1 470841 D 364254 CDS YP_535326.1 90961410 3977055 473536..474894 1 NC_007929.1 COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease 474894 3977055 LSL_0433 Lactobacillus salivarius UCC118 amino acid permease YP_535326.1 473536 D 364254 CDS YP_535327.1 90961411 3977056 474993..475598 1 NC_007929.1 COG4186 [R] Predicted phosphoesterase or phosphohydrolase; phosphoesterase 475598 3977056 LSL_0434 Lactobacillus salivarius UCC118 phosphoesterase YP_535327.1 474993 D 364254 CDS YP_535328.1 90961412 3977057 475676..476260 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 476260 3977057 LSL_0435 Lactobacillus salivarius UCC118 hypothetical protein YP_535328.1 475676 D 364254 CDS YP_535329.1 90961413 3977058 476271..477044 1 NC_007929.1 COG0647 [G] Predicted sugar phosphatases of the HAD superfamily; N-acetylglucosamine catabolic protein 477044 nagD 3977058 nagD Lactobacillus salivarius UCC118 N-acetylglucosamine catabolic protein YP_535329.1 476271 D 364254 CDS YP_535330.1 90961414 3977059 477044..477688 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 477688 3977059 LSL_0437 Lactobacillus salivarius UCC118 hypothetical protein YP_535330.1 477044 D 364254 CDS YP_535331.1 90961415 3977060 complement(477779..478420) 1 NC_007929.1 COG0586 [S] Uncharacterized membrane-associated protein; DedA family protein 478420 dedA 3977060 dedA Lactobacillus salivarius UCC118 DedA family protein YP_535331.1 477779 R 364254 CDS YP_535332.1 90961416 3977061 complement(478481..479506) 1 NC_007929.1 COG0492 [O] Thioredoxin reductase; thioredoxin reductase 479506 trxB 3977061 trxB Lactobacillus salivarius UCC118 thioredoxin reductase YP_535332.1 478481 R 364254 CDS YP_535333.1 90961417 3977062 479626..480036 1 NC_007929.1 COG1098 [J] Predicted RNA binding protein (contains ribosomal protein S1 domain); polyribonucleotide nucleotidyltransferase 480036 3977062 LSL_0440 Lactobacillus salivarius UCC118 polyribonucleotide nucleotidyltransferase YP_535333.1 479626 D 364254 CDS YP_535334.1 90961418 3977436 487146..488336 1 NC_007929.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 488336 metK 3977436 metK Lactobacillus salivarius UCC118 S-adenosylmethionine synthetase YP_535334.1 487146 D 364254 CDS YP_535335.1 90961419 3977437 488667..491084 1 NC_007929.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 491084 leuS 3977437 leuS Lactobacillus salivarius UCC118 leucyl-tRNA synthetase YP_535335.1 488667 D 364254 CDS YP_535336.1 90961420 3977438 491324..492661 1 NC_007929.1 COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease 492661 3977438 LSL_0443 Lactobacillus salivarius UCC118 amino acid permease YP_535336.1 491324 D 364254 CDS YP_535337.1 90961421 3977608 492781..494427 1 NC_007929.1 COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; export protein for polysaccharides and teichoic acids 494427 3977608 LSL_0444 Lactobacillus salivarius UCC118 export protein for polysaccharides and teichoic acids YP_535337.1 492781 D 364254 CDS YP_535338.1 90961422 3977609 494432..495154 1 NC_007929.1 COG1187 [J] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal small subunit pseudouridine synthase A 495154 rsuA 3977609 rsuA Lactobacillus salivarius UCC118 ribosomal small subunit pseudouridine synthase A YP_535338.1 494432 D 364254 CDS YP_535339.1 90961423 3977610 complement(495185..496036) 1 NC_007929.1 COG0061 [G] Predicted sugar kinase; sugar kinase 496036 3977610 LSL_0446 Lactobacillus salivarius UCC118 sugar kinase YP_535339.1 495185 R 364254 CDS YP_535340.1 90961424 3977611 496152..497561 1 NC_007929.1 COG0624 [E] acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; Xaa-His dipeptidase 497561 3977611 LSL_0447 Lactobacillus salivarius UCC118 Xaa-His dipeptidase YP_535340.1 496152 D 364254 CDS YP_535341.1 90961425 3977613 complement(497989..498273) 1 NC_007929.1 hypothetical protein 498273 3977613 LSL_0448 Lactobacillus salivarius UCC118 hypothetical protein YP_535341.1 497989 R 364254 CDS YP_535342.1 90961426 3977614 498676..499122 1 NC_007929.1 COG0764 [I] 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxyacyl-ACP dehydratase 499122 fabA 3977614 fabA Lactobacillus salivarius UCC118 (3R)-hydroxyacyl-ACP dehydratase YP_535342.1 498676 D 364254 CDS YP_535343.1 90961427 3977615 499199..499639 1 NC_007929.1 COG1522 [K] Transcriptional regulators; MarR family transcriptional regulator 499639 3977615 LSL_0450 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_535343.1 499199 D 364254 CDS YP_535344.1 90961428 3977616 499656..500636 1 NC_007929.1 COG0332 [I] 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-[acyl-carrier-protein] synthase III 500636 fabH 3977616 fabH Lactobacillus salivarius UCC118 3-oxoacyl-[acyl-carrier-protein] synthase III YP_535344.1 499656 D 364254 CDS YP_535345.1 90961429 3977617 500656..500898 1 NC_007929.1 COG0236 [IQ] acyl carrier protein; acyl carrier protein 500898 acpP 3977617 acpP Lactobacillus salivarius UCC118 acyl carrier protein YP_535345.1 500656 D 364254 CDS YP_535346.1 90961430 3977618 500912..501850 1 NC_007929.1 COG0331 [I] (acyl-carrier-protein) S-malonyltransferase; malonyl-CoA-[acyl-carrier-protein] transacylase 501850 fabD 3977618 fabD Lactobacillus salivarius UCC118 malonyl-CoA-[acyl-carrier-protein] transacylase YP_535346.1 500912 D 364254 CDS YP_535347.1 90961431 3977619 501851..502582 1 NC_007929.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 502582 fabG 3977619 fabG Lactobacillus salivarius UCC118 3-ketoacyl-(acyl-carrier-protein) reductase YP_535347.1 501851 D 364254 CDS YP_535348.1 90961432 3977620 502595..503833 1 NC_007929.1 COG0304 [IQ] 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-[acyl-carrier-protein] synthase 503833 fabB 3977620 fabB Lactobacillus salivarius UCC118 3-oxoacyl-[acyl-carrier-protein] synthase YP_535348.1 502595 D 364254 CDS YP_535349.1 90961433 3977621 503836..504285 1 NC_007929.1 COG0511 [I] Biotin carboxyl carrier protein; biotin carboxyl carrier protein of acetyl-CoA carboxylase 504285 accB 3977621 accB Lactobacillus salivarius UCC118 biotin carboxyl carrier protein of acetyl-CoA carboxylase YP_535349.1 503836 D 364254 CDS YP_535350.1 90961434 3977622 504290..504712 1 NC_007929.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 504712 fabZ 3977622 fabZ Lactobacillus salivarius UCC118 (3R)-hydroxymyristoyl-ACP dehydratase YP_535350.1 504290 D 364254 CDS YP_535351.1 90961435 3977623 504737..506116 1 NC_007929.1 COG0439 [I] Biotin carboxylase; biotin carboxylase 506116 accC 3977623 accC Lactobacillus salivarius UCC118 biotin carboxylase YP_535351.1 504737 D 364254 CDS YP_535352.1 90961436 3977624 506103..506954 1 NC_007929.1 COG0777 [I] acetyl-CoA carboxylase beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 506954 accD 3977624 accD Lactobacillus salivarius UCC118 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_535352.1 506103 D 364254 CDS YP_535353.1 90961437 3977625 506955..507743 1 NC_007929.1 COG0825 [I] acetyl-CoA carboxylase alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 507743 accA 3977625 accA Lactobacillus salivarius UCC118 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_535353.1 506955 D 364254 CDS YP_535354.1 90961438 3977626 507759..508517 1 NC_007929.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 508517 fabI 3977626 fabI Lactobacillus salivarius UCC118 enoyl-(acyl carrier protein) reductase YP_535354.1 507759 D 364254 CDS YP_535355.1 90961439 3976838 508664..510148 1 NC_007929.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 510148 zwf 3976838 zwf Lactobacillus salivarius UCC118 glucose-6-phosphate 1-dehydrogenase YP_535355.1 508664 D 364254 CDS YP_535356.1 90961440 3976840 complement(511732..513084) 1 NC_007929.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 513084 pgi 3976840 pgi Lactobacillus salivarius UCC118 glucose-6-phosphate isomerase YP_535356.1 511732 R 364254 CDS YP_535357.1 90961441 3976841 513311..515494 1 NC_007929.1 COG1368 [M] Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; sulfatase family protein 515494 3976841 LSL_0465 Lactobacillus salivarius UCC118 sulfatase family protein YP_535357.1 513311 D 364254 CDS YP_535358.1 90961442 3976842 complement(515606..516343) 1 NC_007929.1 COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein 516343 glpF 3976842 glpF Lactobacillus salivarius UCC118 glycerol uptake facilitator protein YP_535358.1 515606 R 364254 CDS YP_535359.1 90961443 3976843 516557..517021 1 NC_007929.1 COG0517 [R] FOG: CBS domain; CBS domain-containing protein 517021 3976843 LSL_0467 Lactobacillus salivarius UCC118 CBS domain-containing protein YP_535359.1 516557 D 364254 CDS YP_535360.1 90961444 3976844 517047..517751 1 NC_007929.1 COG2171 [E] Tetrahydrodipicolinate N-succinyltransferase; tetrahydrodipicolinate N-acetyltransferase 517751 3976844 LSL_0468 Lactobacillus salivarius UCC118 tetrahydrodipicolinate N-acetyltransferase YP_535360.1 517047 D 364254 CDS YP_535361.1 90961445 3976845 517868..519013 1 NC_007929.1 COG1473 [R] Metal-dependent amidase/aminoacylase/carboxypeptidase; N-acetyldiaminopimelate deacetylase 519013 3976845 LSL_0469 Lactobacillus salivarius UCC118 N-acetyldiaminopimelate deacetylase YP_535361.1 517868 D 364254 CDS YP_535362.1 90961446 3976846 complement(519110..520000) 1 NC_007929.1 COG0668 [M] Small-conductance mechanosensitive channel; mechanosensitive ion channel 520000 3976846 LSL_0470 Lactobacillus salivarius UCC118 mechanosensitive ion channel YP_535362.1 519110 R 364254 CDS YP_535363.1 90961447 3976847 520190..520855 1 NC_007929.1 COG0583 [K] Transcriptional regulator; Crp family transcriptional regulator 520855 3976847 LSL_0471 Lactobacillus salivarius UCC118 Crp family transcriptional regulator YP_535363.1 520190 D 364254 CDS YP_535364.1 90961448 3976848 520935..523079 1 NC_007929.1 COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); multimodular transpeptidase-transglycosylase PBP 2A 523079 mrcA 3976848 mrcA Lactobacillus salivarius UCC118 multimodular transpeptidase-transglycosylase PBP 2A YP_535364.1 520935 D 364254 CDS YP_535365.1 90961449 3976849 523125..523469 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 523469 3976849 LSL_0473 Lactobacillus salivarius UCC118 hypothetical protein YP_535365.1 523125 D 364254 CDS YP_535366.1 90961450 3976850 523562..524509 1 NC_007929.1 COG3481 [R] Predicted HD-superfamily hydrolase; CMP-binding factor 524509 3976850 LSL_0474 Lactobacillus salivarius UCC118 CMP-binding factor YP_535366.1 523562 D 364254 CDS YP_535367.1 90961451 3976851 complement(524582..525472) 1 NC_007929.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase 525472 prsA 3976851 prsA Lactobacillus salivarius UCC118 peptidylprolyl isomerase YP_535367.1 524582 R 364254 CDS YP_535368.1 90961452 3976852 complement(525592..525870) 1 NC_007929.1 hypothetical protein 525870 3976852 LSL_0476 Lactobacillus salivarius UCC118 hypothetical protein YP_535368.1 525592 R 364254 CDS YP_535369.1 90961453 3976853 complement(525874..526302) 1 NC_007929.1 COG0537 [FGR] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) 526302 3976853 LSL_0477 Lactobacillus salivarius UCC118 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) YP_535369.1 525874 R 364254 CDS YP_535370.1 90961454 3976854 526423..527163 1 NC_007929.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 527163 3976854 LSL_0478 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535370.1 526423 D 364254 CDS YP_535371.1 90961455 3976855 527156..528349 1 NC_007929.1 COG4473 [U] Predicted ABC-type exoprotein transport system, permease component; protein ecsB 528349 3976855 LSL_0479 Lactobacillus salivarius UCC118 protein ecsB YP_535371.1 527156 D 364254 CDS YP_535372.1 90961456 3977931 528412..529200 1 NC_007929.1 COG0510 [M] Predicted choline kinase involved in LPS biosynthesis; phosphotransferase family protein 529200 3977931 LSL_0480 Lactobacillus salivarius UCC118 phosphotransferase family protein YP_535372.1 528412 D 364254 CDS YP_535373.1 90961457 3977932 529276..529914 1 NC_007929.1 COG0220 [R] Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (m(7)G46) methyltransferase 529914 3977932 LSL_0481 Lactobacillus salivarius UCC118 tRNA (m(7)G46) methyltransferase YP_535373.1 529276 D 364254 CDS YP_535374.1 90961458 3977933 complement(529897..530289) 1 NC_007929.1 hypothetical protein 530289 3977933 LSL_0482 Lactobacillus salivarius UCC118 hypothetical protein YP_535374.1 529897 R 364254 CDS YP_535375.1 90961459 3977934 530363..530680 1 NC_007929.1 COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin 530680 trxA 3977934 trxA Lactobacillus salivarius UCC118 thioredoxin YP_535375.1 530363 D 364254 CDS YP_535376.1 90961460 3977935 530707..531357 1 NC_007929.1 COG0073 [R] EMAP domain; tRNA-binding domain-containing protein 531357 3977935 LSL_0484 Lactobacillus salivarius UCC118 tRNA-binding domain-containing protein YP_535376.1 530707 D 364254 CDS YP_535377.1 90961461 3977937 533809..535140 1 NC_007929.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 535140 murC 3977937 murC Lactobacillus salivarius UCC118 UDP-N-acetylmuramate--L-alanine ligase YP_535377.1 533809 D 364254 CDS YP_535378.1 90961462 3977938 535249..535689 1 NC_007929.1 COG2030 [I] acyl dehydratase; dehydrogenase 535689 maoC 3977938 maoC Lactobacillus salivarius UCC118 dehydrogenase YP_535378.1 535249 D 364254 CDS YP_535379.1 90961463 3977939 535711..536424 1 NC_007929.1 COG0670 [R] Integral membrane protein, interacts with FtsH; integral membrane protein 536424 3977939 LSL_0487 Lactobacillus salivarius UCC118 integral membrane protein YP_535379.1 535711 D 364254 CDS YP_535380.1 90961464 3977940 536545..539223 1 NC_007929.1 COG0749 [L] DNA polymerase I - 3'-5' exonuclease and polymerase domains; DNA polymerase I 539223 polA 3977940 polA Lactobacillus salivarius UCC118 DNA polymerase I YP_535380.1 536545 D 364254 CDS YP_535381.1 90961465 3977941 539236..540066 1 NC_007929.1 COG0266 [L] Formamidopyrimidine-DNA glycosylase; formamidopyrimidine-DNA glycosylase 540066 nei 3977941 nei Lactobacillus salivarius UCC118 formamidopyrimidine-DNA glycosylase YP_535381.1 539236 D 364254 CDS YP_535382.1 90961466 3977942 540063..540668 1 NC_007929.1 COG0237 [H] Dephospho-CoA kinase; dephospho-CoA kinase 540668 coaE 3977942 coaE Lactobacillus salivarius UCC118 dephospho-CoA kinase YP_535382.1 540063 D 364254 CDS YP_535383.1 90961467 3977943 540683..541156 1 NC_007929.1 COG1327 [K] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains; NrdR family transcriptional regulator 541156 nrdR 3977943 nrdR Lactobacillus salivarius UCC118 NrdR family transcriptional regulator YP_535383.1 540683 D 364254 CDS YP_535384.1 90961468 3977944 541166..542512 1 NC_007929.1 COG3611 [L] Replication initiation/membrane attachment protein; chromosome replication initiation / membrane attachment protein 542512 dnaB 3977944 dnaB Lactobacillus salivarius UCC118 chromosome replication initiation / membrane attachment protein YP_535384.1 541166 D 364254 CDS YP_535385.1 90961469 3977945 542522..543451 1 NC_007929.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 543451 dnaI 3977945 dnaI Lactobacillus salivarius UCC118 primosomal protein DnaI YP_535385.1 542522 D 364254 CDS YP_535386.1 90961470 3977946 543759..545708 1 NC_007929.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 545708 thrS 3977946 thrS Lactobacillus salivarius UCC118 threonyl-tRNA synthetase YP_535386.1 543759 D 364254 CDS YP_535387.1 90961471 3977947 545916..546440 1 NC_007929.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 546440 infC 3977947 infC Lactobacillus salivarius UCC118 translation initiation factor IF-3 YP_535387.1 545916 D 364254 CDS YP_535388.1 90961472 3977948 546477..546677 1 NC_007929.1 COG0291 [J] Ribosomal protein L35; 50S ribosomal protein L35 546677 rpmI 3977948 rpmI Lactobacillus salivarius UCC118 50S ribosomal protein L35 YP_535388.1 546477 D 364254 CDS YP_535389.1 90961473 3977949 546770..547132 1 NC_007929.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 547132 rplT 3977949 rplT Lactobacillus salivarius UCC118 50S ribosomal protein L20 YP_535389.1 546770 D 364254 CDS YP_535390.1 90961474 3977570 complement(547229..548518) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 548518 3977570 LSL_0498 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535390.1 547229 R 364254 CDS YP_535391.1 90961475 3977571 548790..549329 1 NC_007929.1 COG2179 [R] Predicted hydrolase of the HAD superfamily; HAD superfamily hydrolase 549329 3977571 LSL_0499 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_535391.1 548790 D 364254 CDS YP_535392.1 90961476 3977572 549316..550437 1 NC_007929.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 550437 3977572 LSL_0500 Lactobacillus salivarius UCC118 GTP-binding protein YqeH YP_535392.1 549316 D 364254 CDS YP_535393.1 90961477 3977573 550450..550770 1 NC_007929.1 COG1534 [J] Predicted RNA-binding protein containing KH domain, possibly ribosomal protein; hypothetical protein 550770 3977573 LSL_0501 Lactobacillus salivarius UCC118 hypothetical protein YP_535393.1 550450 D 364254 CDS YP_535394.1 90961478 3977574 550789..551421 1 NC_007929.1 COG1057 [H] Nicotinic acid mononucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase 551421 nadD 3977574 nadD Lactobacillus salivarius UCC118 nicotinate-nucleotide adenylyltransferase YP_535394.1 550789 D 364254 CDS YP_535395.1 90961479 3977575 551414..552013 1 NC_007929.1 COG1713 [H] Predicted HD superfamily hydrolase involved in NAD metabolism; hypothetical protein 552013 3977575 LSL_0503 Lactobacillus salivarius UCC118 hypothetical protein YP_535395.1 551414 D 364254 CDS YP_535396.1 90961480 3977576 552036..552389 1 NC_007929.1 COG0799 [S] Uncharacterized homolog of plant Iojap protein; Iojap-related protein 552389 3977576 LSL_0504 Lactobacillus salivarius UCC118 Iojap-related protein YP_535396.1 552036 D 364254 CDS YP_535397.1 90961481 3977578 553146..554288 1 NC_007929.1 COG1019 [R] Predicted nucleotidyltransferase; hypothetical protein 554288 3977578 LSL_0505 Lactobacillus salivarius UCC118 hypothetical protein YP_535397.1 553146 D 364254 CDS YP_535398.1 90961482 3977579 554365..554910 1 NC_007929.1 COG1399 [R] Predicted metal-binding, possibly nucleic acid-binding protein; hypothetical protein 554910 3977579 LSL_0506 Lactobacillus salivarius UCC118 hypothetical protein YP_535398.1 554365 D 364254 CDS YP_535399.1 90961483 3977580 554993..555169 1 NC_007929.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 555169 rpmF 3977580 rpmF Lactobacillus salivarius UCC118 50S ribosomal protein L32 YP_535399.1 554993 D 364254 CDS YP_535400.1 90961484 3977581 complement(555328..555951) 1 NC_007929.1 COG0204 [I] 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 555951 plsC 3977581 plsC Lactobacillus salivarius UCC118 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_535400.1 555328 R 364254 CDS YP_535401.1 90961485 3977582 556041..556799 1 NC_007929.1 COG4122 [R] Predicted O-methyltransferase; methyltransferase 556799 3977582 LSL_0509 Lactobacillus salivarius UCC118 methyltransferase YP_535401.1 556041 D 364254 CDS YP_535402.1 90961486 3977583 556783..557070 1 NC_007929.1 COG2827 [L] Predicted endonuclease containing a URI domain; hypothetical protein 557070 3977583 LSL_0510 Lactobacillus salivarius UCC118 hypothetical protein YP_535402.1 556783 D 364254 CDS YP_535403.1 90961487 3977584 557234..558031 1 NC_007929.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 558031 rpsB 3977584 rpsB Lactobacillus salivarius UCC118 30S ribosomal protein S2 YP_535403.1 557234 D 364254 CDS YP_535404.1 90961488 3977585 558125..559000 1 NC_007929.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 559000 tsf 3977585 tsf Lactobacillus salivarius UCC118 elongation factor Ts YP_535404.1 558125 D 364254 CDS YP_535405.1 90961489 3977586 559288..559608 1 NC_007929.1 hypothetical protein 559608 3977586 LSL_0513 Lactobacillus salivarius UCC118 hypothetical protein YP_535405.1 559288 D 364254 CDS YP_535406.1 90961490 3977587 complement(559675..560397) 1 NC_007929.1 COG1428 [F] Deoxynucleoside kinases; deoxyguanosine kinase 560397 3977587 LSL_0514 Lactobacillus salivarius UCC118 deoxyguanosine kinase YP_535406.1 559675 R 364254 CDS YP_535407.1 90961491 3977588 560602..561090 1 NC_007929.1 COG0041 [F] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit 561090 purE 3977588 purE Lactobacillus salivarius UCC118 phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit YP_535407.1 560602 D 364254 CDS YP_535408.1 90961492 3977222 561083..562204 1 NC_007929.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 562204 purK 3977222 purK Lactobacillus salivarius UCC118 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_535408.1 561083 D 364254 CDS YP_535409.1 90961493 3977223 562216..563511 1 NC_007929.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 563511 purB 3977223 purB Lactobacillus salivarius UCC118 adenylosuccinate lyase YP_535409.1 562216 D 364254 CDS YP_535410.1 90961494 3977224 563625..564602 1 NC_007929.1 COG3049 [M] Penicillin V acylase and related amidases; choloylglycine hydrolase 564602 3977224 LSL_0518 Lactobacillus salivarius UCC118 choloylglycine hydrolase YP_535410.1 563625 D 364254 CDS YP_535411.1 90961495 3977225 564956..565783 1 NC_007929.1 hypothetical protein 565783 3977225 LSL_0519 Lactobacillus salivarius UCC118 hypothetical protein YP_535411.1 564956 D 364254 CDS YP_535412.1 90961496 3977226 565776..566123 1 NC_007929.1 hypothetical protein 566123 3977226 LSL_0520 Lactobacillus salivarius UCC118 hypothetical protein YP_535412.1 565776 D 364254 CDS YP_535413.1 90961497 3977227 566127..566771 1 NC_007929.1 hypothetical protein 566771 3977227 LSL_0521 Lactobacillus salivarius UCC118 hypothetical protein YP_535413.1 566127 D 364254 CDS YP_535414.1 90961498 3977229 567551..568237 1 NC_007929.1 COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 568237 3977229 LSL_0522 Lactobacillus salivarius UCC118 two-component response regulator YP_535414.1 567551 D 364254 CDS YP_535415.1 90961499 3977230 568257..569747 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; transmembrane histidine kinase 569747 csrS 3977230 csrS Lactobacillus salivarius UCC118 transmembrane histidine kinase YP_535415.1 568257 D 364254 CDS YP_535416.1 90961500 3977231 complement(569948..570871) 1 NC_007929.1 COG0706 [U] Preprotein translocase subunit YidC; 60 kDa inner membrane protein 570871 yidC 3977231 yidC Lactobacillus salivarius UCC118 60 kDa inner membrane protein YP_535416.1 569948 R 364254 CDS YP_535417.1 90961501 3977232 complement(570979..571251) 1 NC_007929.1 COG1254 [C] acylphosphatases; acylphosphatase 571251 acyP 3977232 acyP Lactobacillus salivarius UCC118 acylphosphatase YP_535417.1 570979 R 364254 CDS YP_535418.1 90961502 3977233 571364..572527 1 NC_007929.1 COG3425 [I] 3-hydroxy-3-methylglutaryl CoA synthase; hydroxymethylglutaryl-CoA synthase 572527 3977233 LSL_0526 Lactobacillus salivarius UCC118 hydroxymethylglutaryl-CoA synthase YP_535418.1 571364 D 364254 CDS YP_535419.1 90961503 3977234 572638..573519 1 NC_007929.1 hypothetical protein 573519 3977234 LSL_0527 Lactobacillus salivarius UCC118 hypothetical protein YP_535419.1 572638 D 364254 CDS YP_535420.1 90961504 3977235 573521..574516 1 NC_007929.1 hypothetical protein 574516 3977235 LSL_0528 Lactobacillus salivarius UCC118 hypothetical protein YP_535420.1 573521 D 364254 CDS YP_535421.1 90961505 3977236 574547..574999 1 NC_007929.1 hypothetical protein 574999 3977236 LSL_0529 Lactobacillus salivarius UCC118 hypothetical protein YP_535421.1 574547 D 364254 CDS YP_535422.1 90961506 3977237 575133..575690 1 NC_007929.1 COG0231 [J] Translation elongation factor P (EF-P); translation initiation factor 5A (eIF-5A); protein translation elongation factor P 575690 efp 3977237 efp Lactobacillus salivarius UCC118 protein translation elongation factor P YP_535422.1 575133 D 364254 CDS YP_535423.1 90961507 3977238 575707..576129 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; alkaline shock protein 576129 3977238 LSL_0531 Lactobacillus salivarius UCC118 alkaline shock protein YP_535423.1 575707 D 364254 CDS YP_535424.1 90961508 3977239 576129..576524 1 NC_007929.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 576524 nusB 3977239 nusB Lactobacillus salivarius UCC118 transcription antitermination protein NusB YP_535424.1 576129 D 364254 CDS YP_535425.1 90961509 3976491 576669..577526 1 NC_007929.1 COG0190 [H] 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase 577526 folD 3976491 folD Lactobacillus salivarius UCC118 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase YP_535425.1 576669 D 364254 CDS YP_535426.1 90961510 3976492 577519..578859 1 NC_007929.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 578859 xseA 3976492 xseA Lactobacillus salivarius UCC118 exodeoxyribonuclease VII large subunit YP_535426.1 577519 D 364254 CDS YP_535427.1 90961511 3976493 578859..579086 1 NC_007929.1 COG1722 [L] Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 579086 xseB 3976493 xseB Lactobacillus salivarius UCC118 exodeoxyribonuclease VII small subunit YP_535427.1 578859 D 364254 CDS YP_535428.1 90961512 3976494 579076..579969 1 NC_007929.1 COG0142 [H] Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 579969 ispA 3976494 ispA Lactobacillus salivarius UCC118 geranyltranstransferase YP_535428.1 579076 D 364254 CDS YP_535429.1 90961513 3976495 579972..580799 1 NC_007929.1 COG1189 [J] Predicted rRNA methylase; hemolysin 580799 3976495 LSL_0537 Lactobacillus salivarius UCC118 hemolysin YP_535429.1 579972 D 364254 CDS YP_535430.1 90961514 3976496 580824..581282 1 NC_007929.1 COG1438 [K] Arginine repressor; arginine repressor 581282 argR 3976496 argR Lactobacillus salivarius UCC118 arginine repressor YP_535430.1 580824 D 364254 CDS YP_535431.1 90961515 3976497 581287..582954 1 NC_007929.1 COG0419 [L] ATPase involved in DNA repair; DNA repair protein 582954 recN 3976497 recN Lactobacillus salivarius UCC118 DNA repair protein YP_535431.1 581287 D 364254 CDS YP_535432.1 90961516 3976498 complement(583018..583638) 1 NC_007929.1 COG1974 [KT] SOS-response transcriptional repressors (RecA-mediated autopeptidases); LexA repressor 583638 lexA 3976498 lexA Lactobacillus salivarius UCC118 LexA repressor YP_535432.1 583018 R 364254 CDS YP_535433.1 90961517 3976499 583785..584039 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 584039 3976499 LSL_0541 Lactobacillus salivarius UCC118 hypothetical protein YP_535433.1 583785 D 364254 CDS YP_535434.1 90961518 3976500 584166..584390 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 584390 3976500 LSL_0542 Lactobacillus salivarius UCC118 hypothetical protein YP_535434.1 584166 D 364254 CDS YP_535435.1 90961519 3976501 584473..585063 1 NC_007929.1 COG0218 [R] Predicted GTPase; GTP-binding protein 585063 3976501 LSL_0543 Lactobacillus salivarius UCC118 GTP-binding protein YP_535435.1 584473 D 364254 CDS YP_535436.1 90961520 3976502 585081..585380 1 NC_007929.1 COG1694 [R] Predicted pyrophosphatase; hypothetical protein 585380 3976502 LSL_0544 Lactobacillus salivarius UCC118 hypothetical protein YP_535436.1 585081 D 364254 CDS YP_535437.1 90961521 3976503 585475..587298 1 NC_007929.1 hypothetical protein 587298 3976503 LSL_0545 Lactobacillus salivarius UCC118 hypothetical protein YP_535437.1 585475 D 364254 CDS YP_535438.1 90961522 3976504 587362..588741 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 588741 3976504 LSL_0546 Lactobacillus salivarius UCC118 IS3 family transposase YP_535438.1 587362 D 364254 CDS YP_535439.1 90961523 3976505 588945..591074 1 NC_007929.1 COG0419 [L] ATPase involved in DNA repair; hypothetical protein 591074 3976505 LSL_0547 Lactobacillus salivarius UCC118 hypothetical protein YP_535439.1 588945 D 364254 CDS YP_535440.1 90961524 3976506 591222..591371 1 NC_007929.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 591371 rpmG 3976506 rpmG Lactobacillus salivarius UCC118 50S ribosomal protein L33 YP_535440.1 591222 D 364254 CDS YP_535441.1 90961525 3976507 591426..591974 1 NC_007929.1 COG0212 [H] 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 591974 3976507 LSL_0549 Lactobacillus salivarius UCC118 5-formyltetrahydrofolate cyclo-ligase YP_535441.1 591426 D 364254 CDS YP_535442.1 90961526 3976508 591988..592650 1 NC_007929.1 COG0705 [R] Uncharacterized membrane protein (homolog of Drosophila rhomboid); rhomboid family integral membrane protein 592650 3976508 LSL_0550 Lactobacillus salivarius UCC118 rhomboid family integral membrane protein YP_535442.1 591988 D 364254 CDS YP_535443.1 90961527 3976509 592690..592929 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 592929 3976509 LSL_0551 Lactobacillus salivarius UCC118 hypothetical protein YP_535443.1 592690 D 364254 CDS YP_535444.1 90961528 3976510 592926..593888 1 NC_007929.1 COG1940 [KG] Transcriptional regulator/sugar kinase; glucokinase 593888 3976510 LSL_0552 Lactobacillus salivarius UCC118 glucokinase YP_535444.1 592926 D 364254 CDS YP_535445.1 90961529 3976511 593931..594344 1 NC_007929.1 COG0607 [P] Rhodanese-related sulfurtransferase; hypothetical protein 594344 3976511 LSL_0553 Lactobacillus salivarius UCC118 hypothetical protein YP_535445.1 593931 D 364254 CDS YP_535446.1 90961530 3976512 complement(594414..594590) 1 NC_007929.1 hypothetical protein 594590 3976512 LSL_0554 Lactobacillus salivarius UCC118 hypothetical protein YP_535446.1 594414 R 364254 CDS YP_535447.1 90961531 3976513 594722..595645 1 NC_007929.1 COG0324 [J] tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 595645 miaA 3976513 miaA Lactobacillus salivarius UCC118 tRNA delta(2)-isopentenylpyrophosphate transferase YP_535447.1 594722 D 364254 CDS YP_535448.1 90961532 3976514 595667..596929 1 NC_007929.1 COG4100 [P] Cystathionine beta-lyase family protein involved in aluminum resistance; aluminum resistance protein 596929 3976514 LSL_0556 Lactobacillus salivarius UCC118 aluminum resistance protein YP_535448.1 595667 D 364254 CDS YP_535449.1 90961533 3976515 597020..597406 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; glutamine synthetase repressor 597406 glnR 3976515 glnR Lactobacillus salivarius UCC118 glutamine synthetase repressor YP_535449.1 597020 D 364254 CDS YP_535450.1 90961534 3976516 597436..598779 1 NC_007929.1 COG0174 [E] Glutamine synthetase; glutamine synthetase 598779 glnA 3976516 glnA Lactobacillus salivarius UCC118 glutamine synthetase YP_535450.1 597436 D 364254 CDS YP_535451.1 90961535 3976517 599192..599653 1 NC_007929.1 COG0350 [L] Methylated DNA-protein cysteine methyltransferase; O6-methylguanine-DNA methyltransferase 599653 ada 3976517 ada Lactobacillus salivarius UCC118 O6-methylguanine-DNA methyltransferase YP_535451.1 599192 D 364254 CDS YP_535452.1 90961536 3976518 599740..600117 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 600117 3976518 LSL_0560 Lactobacillus salivarius UCC118 hypothetical protein YP_535452.1 599740 D 364254 CDS YP_535453.1 90961537 3976519 600230..600952 1 NC_007929.1 COG0528 [F] Uridylate kinase; uridylate kinase 600952 pyrH 3976519 pyrH Lactobacillus salivarius UCC118 uridylate kinase YP_535453.1 600230 D 364254 CDS YP_535454.1 90961538 3976520 600955..601518 1 NC_007929.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 601518 frr 3976520 frr Lactobacillus salivarius UCC118 ribosome recycling factor YP_535454.1 600955 D 364254 CDS YP_535455.1 90961539 3976521 601653..602435 1 NC_007929.1 COG0020 [I] Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthetase 602435 uppS 3976521 uppS Lactobacillus salivarius UCC118 undecaprenyl pyrophosphate synthetase YP_535455.1 601653 D 364254 CDS YP_535456.1 90961540 3976522 602438..603226 1 NC_007929.1 COG0575 [I] CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 603226 cdsA 3976522 cdsA Lactobacillus salivarius UCC118 phosphatidate cytidylyltransferase YP_535456.1 602438 D 364254 CDS YP_535457.1 90961541 3976523 603251..604528 1 NC_007929.1 COG0750 [M] Predicted membrane-associated Zn-dependent proteases 1; M50 family membrane endopeptidase 604528 3976523 LSL_0565 Lactobacillus salivarius UCC118 M50 family membrane endopeptidase YP_535457.1 603251 D 364254 CDS YP_535458.1 90961542 3976524 604579..606294 1 NC_007929.1 COG0442 [J] Prolyl-tRNA synthetase; prolyl-tRNA synthetase 606294 proS 3976524 proS Lactobacillus salivarius UCC118 prolyl-tRNA synthetase YP_535458.1 604579 D 364254 CDS YP_535459.1 90961543 3976525 606391..610725 1 NC_007929.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 610725 polC 3976525 polC Lactobacillus salivarius UCC118 DNA polymerase III PolC YP_535459.1 606391 D 364254 CDS YP_535460.1 90961544 3976526 610934..611407 1 NC_007929.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 611407 3976526 LSL_0568 Lactobacillus salivarius UCC118 hypothetical protein YP_535460.1 610934 D 364254 CDS YP_535461.1 90961545 3976527 611433..612560 1 NC_007929.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 612560 nusA 3976527 nusA Lactobacillus salivarius UCC118 transcription elongation factor NusA YP_535461.1 611433 D 364254 CDS YP_535462.1 90961546 3976528 612563..612862 1 NC_007929.1 COG2740 [K] Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 612862 3976528 LSL_0570 Lactobacillus salivarius UCC118 hypothetical protein YP_535462.1 612563 D 364254 CDS YP_535463.1 90961547 3976529 612852..613157 1 NC_007929.1 COG1358 [J] Ribosomal protein HS6-type (S12/L30/L7a); 50S ribosomal protein L7AE 613157 rPL 3976529 rPL Lactobacillus salivarius UCC118 50S ribosomal protein L7AE YP_535463.1 612852 D 364254 CDS YP_535464.1 90961548 3976702 613229..615442 1 NC_007929.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 615442 infB 3976702 infB Lactobacillus salivarius UCC118 translation initiation factor IF-2 YP_535464.1 613229 D 364254 CDS YP_535465.1 90961549 3976703 615466..615825 1 NC_007929.1 COG0858 [J] Ribosome-binding factor A; ribosome-binding factor A 615825 rbfA 3976703 rbfA Lactobacillus salivarius UCC118 ribosome-binding factor A YP_535465.1 615466 D 364254 CDS YP_535466.1 90961550 3976704 615895..616803 1 NC_007929.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 616803 truB 3976704 truB Lactobacillus salivarius UCC118 tRNA pseudouridine synthase B YP_535466.1 615895 D 364254 CDS YP_535467.1 90961551 3976705 616816..617772 1 NC_007929.1 COG0196 [H] FAD synthase; riboflavin kinase / FMN adenylyltransferase 617772 ribF 3976705 ribF Lactobacillus salivarius UCC118 riboflavin kinase / FMN adenylyltransferase YP_535467.1 616816 D 364254 CDS YP_535468.1 90961552 3976706 617893..618945 1 NC_007929.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 618945 hrcA 3976706 hrcA Lactobacillus salivarius UCC118 heat-inducible transcription repressor YP_535468.1 617893 D 364254 CDS YP_535469.1 90961553 3976707 618942..619538 1 NC_007929.1 COG0576 [O] Molecular chaperone GrpE (heat shock protein); GrpE protein 619538 grpE 3976707 grpE Lactobacillus salivarius UCC118 GrpE protein YP_535469.1 618942 D 364254 CDS YP_535470.1 90961554 3976708 619577..621424 1 NC_007929.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 621424 dnaK 3976708 dnaK Lactobacillus salivarius UCC118 molecular chaperone DnaK YP_535470.1 619577 D 364254 CDS YP_535471.1 90961555 3976709 621565..622698 1 NC_007929.1 COG0484 [O] DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein 622698 dnaJ 3976709 dnaJ Lactobacillus salivarius UCC118 chaperone protein YP_535471.1 621565 D 364254 CDS YP_535472.1 90961556 3976710 622843..624672 1 NC_007929.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 624672 lepA 3976710 lepA Lactobacillus salivarius UCC118 GTP-binding protein LepA YP_535472.1 622843 D 364254 CDS YP_535473.1 90961557 3976712 625291..626748 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein / glutamine transport system permease 626748 glnP 3976712 glnP Lactobacillus salivarius UCC118 glutamine-binding protein / glutamine transport system permease YP_535473.1 625291 D 364254 CDS YP_535474.1 90961558 3976713 626748..627488 1 NC_007929.1 COG1126 [E] ABC-type polar amino acid transport system, ATPase component; glutamine transport ATP-binding protein 627488 glnQ 3976713 glnQ Lactobacillus salivarius UCC118 glutamine transport ATP-binding protein YP_535474.1 626748 D 364254 CDS YP_535475.1 90961559 3976714 complement(627569..627898) 1 NC_007929.1 hypothetical protein 627898 3976714 LSL_0583 Lactobacillus salivarius UCC118 hypothetical protein YP_535475.1 627569 R 364254 CDS YP_535476.1 90961560 3976715 627991..628992 1 NC_007929.1 COG1680 [V] beta-lactamase class C and other penicillin binding proteins; beta-lactamase family protein 628992 ampC 3976715 ampC Lactobacillus salivarius UCC118 beta-lactamase family protein YP_535476.1 627991 D 364254 CDS YP_535477.1 90961561 3976716 complement(629058..629855) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 629855 3976716 LSL_0585 Lactobacillus salivarius UCC118 IS3 family transposase YP_535477.1 629058 R 364254 CDS YP_535478.1 90961562 3976717 complement(629972..630640) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 630640 3976717 LSL_0586 Lactobacillus salivarius UCC118 IS3 family transposase YP_535478.1 629972 R 364254 CDS YP_535479.1 90961563 3976718 complement(630745..631449) 1 NC_007929.1 COG0121 [R] Predicted glutamine amidotransferase; cobyric acid synthase 631449 3976718 LSL_0587 Lactobacillus salivarius UCC118 cobyric acid synthase YP_535479.1 630745 R 364254 CDS YP_535480.1 90961564 3976719 complement(631452..632801) 1 NC_007929.1 COG0769 [M] UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 632801 murE 3976719 murE Lactobacillus salivarius UCC118 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_535480.1 631452 R 364254 CDS YP_535481.1 90961565 3976720 633074..633679 1 NC_007929.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 633679 tdk 3976720 tdk Lactobacillus salivarius UCC118 thymidine kinase YP_535481.1 633074 D 364254 CDS YP_535482.1 90961566 3977184 633672..634754 1 NC_007929.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 634754 prfA 3977184 prfA Lactobacillus salivarius UCC118 peptide chain release factor 1 YP_535482.1 633672 D 364254 CDS YP_535483.1 90961567 3977185 634747..635586 1 NC_007929.1 COG2890 [J] Methylase of polypeptide chain release factors; peptide release factor-glutamine N5-methyltransferase 635586 3977185 LSL_0591 Lactobacillus salivarius UCC118 peptide release factor-glutamine N5-methyltransferase YP_535483.1 634747 D 364254 CDS YP_535484.1 90961568 3977186 635604..636614 1 NC_007929.1 COG0009 [J] translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein 636614 3977186 LSL_0592 Lactobacillus salivarius UCC118 Sua5/YciO/YrdC/YwlC family protein YP_535484.1 635604 D 364254 CDS YP_535485.1 90961569 3977187 636708..637337 1 NC_007929.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 637337 upp 3977187 upp Lactobacillus salivarius UCC118 uracil phosphoribosyltransferase YP_535485.1 636708 D 364254 CDS YP_535486.1 90961570 3977188 637568..638281 1 NC_007929.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 638281 atpB 3977188 atpB Lactobacillus salivarius UCC118 F0F1 ATP synthase subunit A YP_535486.1 637568 D 364254 CDS YP_535487.1 90961571 3977189 638300..638524 1 NC_007929.1 COG0636 [C] F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; ATP synthase subunit C 638524 atpE 3977189 atpE Lactobacillus salivarius UCC118 ATP synthase subunit C YP_535487.1 638300 D 364254 CDS YP_535488.1 90961572 3977190 638577..639104 1 NC_007929.1 COG0711 [C] F0F1-type ATP synthase, subunit b; ATP synthase subunit B 639104 atpF 3977190 atpF Lactobacillus salivarius UCC118 ATP synthase subunit B YP_535488.1 638577 D 364254 CDS YP_535489.1 90961573 3977191 639091..639633 1 NC_007929.1 COG0712 [C] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein); ATP synthase subunit delta 639633 atpH 3977191 atpH Lactobacillus salivarius UCC118 ATP synthase subunit delta YP_535489.1 639091 D 364254 CDS YP_535490.1 90961574 3977192 639654..641165 1 NC_007929.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 641165 atpA 3977192 atpA Lactobacillus salivarius UCC118 F0F1 ATP synthase subunit alpha YP_535490.1 639654 D 364254 CDS YP_535491.1 90961575 3977193 641185..642114 1 NC_007929.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 642114 atpG 3977193 atpG Lactobacillus salivarius UCC118 F0F1 ATP synthase subunit gamma YP_535491.1 641185 D 364254 CDS YP_535492.1 90961576 3977194 642139..643545 1 NC_007929.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 643545 atpD 3977194 atpD Lactobacillus salivarius UCC118 F0F1 ATP synthase subunit beta YP_535492.1 642139 D 364254 CDS YP_535493.1 90961577 3977195 643560..643979 1 NC_007929.1 COG0355 [C] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); ATP synthase epsilon chain 643979 atpC 3977195 atpC Lactobacillus salivarius UCC118 ATP synthase epsilon chain YP_535493.1 643560 D 364254 CDS YP_535494.1 90961578 3977196 644116..644346 1 NC_007929.1 hypothetical protein 644346 3977196 LSL_0602 Lactobacillus salivarius UCC118 hypothetical protein YP_535494.1 644116 D 364254 CDS YP_535495.1 90961579 3977197 644366..645691 1 NC_007929.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 645691 murA 3977197 murA Lactobacillus salivarius UCC118 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_535495.1 644366 D 364254 CDS YP_535496.1 90961580 3977198 645849..646835 1 NC_007929.1 COG1077 [D] Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 646835 mreB 3977198 mreB Lactobacillus salivarius UCC118 rod shape-determining protein MreB YP_535496.1 645849 D 364254 CDS YP_535497.1 90961581 3977199 646810..647073 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 647073 3977199 LSL_0605 Lactobacillus salivarius UCC118 hypothetical protein YP_535497.1 646810 D 364254 CDS YP_535498.1 90961582 3977200 647085..647306 1 NC_007929.1 hypothetical protein 647306 3977200 LSL_0606 Lactobacillus salivarius UCC118 hypothetical protein YP_535498.1 647085 D 364254 CDS YP_535499.1 90961583 3977201 647378..648580 1 NC_007929.1 COG0772 [D] Bacterial cell division membrane protein; rod shape determining protein 648580 ftsW 3977201 ftsW Lactobacillus salivarius UCC118 rod shape determining protein YP_535499.1 647378 D 364254 CDS YP_535500.1 90961584 3977202 648605..648958 1 NC_007929.1 COG1393 [P] Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 648958 arsC 3977202 arsC Lactobacillus salivarius UCC118 arsenate reductase YP_535500.1 648605 D 364254 CDS YP_535501.1 90961585 3977165 complement(649111..650400) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 650400 3977165 LSL_0609 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535501.1 649111 R 364254 CDS YP_535502.1 90961586 3977166 650629..651483 1 NC_007929.1 hypothetical protein 651483 3977166 LSL_0610 Lactobacillus salivarius UCC118 hypothetical protein YP_535502.1 650629 D 364254 CDS YP_535503.1 90961587 3977167 651605..652222 1 NC_007929.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 652222 gmk 3977167 gmk Lactobacillus salivarius UCC118 guanylate kinase YP_535503.1 651605 D 364254 CDS YP_535504.1 90961588 3977168 652224..652421 1 NC_007929.1 DNA-directed RNA polymerase omega chain 652421 3977168 LSL_0612 Lactobacillus salivarius UCC118 DNA-directed RNA polymerase omega chain YP_535504.1 652224 D 364254 CDS YP_535505.1 90961589 3977169 652566..653765 1 NC_007929.1 COG0452 [H] Phosphopantothenoylcysteine synthetase/decarboxylase; phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase 653765 3977169 LSL_0613 Lactobacillus salivarius UCC118 phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase YP_535505.1 652566 D 364254 CDS YP_535506.1 90961590 3977170 653814..656192 1 NC_007929.1 primosomal protein n-prim 656192 3977170 LSL_0613b Lactobacillus salivarius UCC118 primosomal protein n-prim YP_535506.1 653814 D 364254 CDS YP_535507.1 90961591 3977171 656210..657166 1 NC_007929.1 COG0223 [J] Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 657166 fmt 3977171 fmt Lactobacillus salivarius UCC118 methionyl-tRNA formyltransferase YP_535507.1 656210 D 364254 CDS YP_535508.1 90961592 3977172 657156..658493 1 NC_007929.1 COG0144 [J] tRNA and rRNA cytosine-C5-methylases; 16S rRNA m(5)C 967 methyltransferase 658493 3977172 LSL_0615 Lactobacillus salivarius UCC118 16S rRNA m(5)C 967 methyltransferase YP_535508.1 657156 D 364254 CDS YP_535509.1 90961593 3977173 658506..659249 1 NC_007929.1 COG0631 [T] Serine/threonine protein phosphatase; protein phosphatase 2C 659249 3977173 LSL_0616 Lactobacillus salivarius UCC118 protein phosphatase 2C YP_535509.1 658506 D 364254 CDS YP_535510.1 90961594 3977175 661023..661913 1 NC_007929.1 COG1160 [R] Predicted GTPases; GTPase 661913 3977175 LSL_0617 Lactobacillus salivarius UCC118 GTPase YP_535510.1 661023 D 364254 CDS YP_535511.1 90961595 3977176 661910..662572 1 NC_007929.1 COG1564 [H] Thiamine pyrophosphokinase; thiamin pyrophosphokinase 662572 3977176 LSL_0618 Lactobacillus salivarius UCC118 thiamin pyrophosphokinase YP_535511.1 661910 D 364254 CDS YP_535512.1 90961596 3977177 complement(662644..662829) 1 NC_007929.1 required for 70S ribosome assembly; 50S ribosomal protein L28 662829 rpmB 3977177 rpmB Lactobacillus salivarius UCC118 50S ribosomal protein L28 YP_535512.1 662644 R 364254 CDS YP_535513.1 90961597 3977178 663094..663456 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 663456 3977178 LSL_0620 Lactobacillus salivarius UCC118 hypothetical protein YP_535513.1 663094 D 364254 CDS YP_535514.1 90961598 3977179 663499..665199 1 NC_007929.1 COG1461 [R] Predicted kinase related to dihydroxyacetone kinase; hypothetical protein 665199 3977179 LSL_0621 Lactobacillus salivarius UCC118 hypothetical protein YP_535514.1 663499 D 364254 CDS YP_535515.1 90961599 3977180 665280..667310 1 NC_007929.1 COG1200 [LK] RecG-like helicase; ATP-dependent DNA helicase 667310 recG 3977180 recG Lactobacillus salivarius UCC118 ATP-dependent DNA helicase YP_535515.1 665280 D 364254 CDS YP_535516.1 90961600 3977181 667323..668324 1 NC_007929.1 COG0416 [I] Fatty acid/phospholipid biosynthesis enzyme; Fatty acid/phospholipid synthesis protein 668324 plsX 3977181 plsX Lactobacillus salivarius UCC118 Fatty acid/phospholipid synthesis protein YP_535516.1 667323 D 364254 CDS YP_535517.1 90961601 3977182 668401..668643 1 NC_007929.1 COG0236 [IQ] acyl carrier protein; acyl carrier protein 668643 acpP 3977182 acpP Lactobacillus salivarius UCC118 acyl carrier protein YP_535517.1 668401 D 364254 CDS YP_535518.1 90961602 3977183 668797..669495 1 NC_007929.1 COG0571 [K] dsRNA-specific ribonuclease; ribonuclease III 669495 rnc 3977183 rnc Lactobacillus salivarius UCC118 ribonuclease III YP_535518.1 668797 D 364254 CDS YP_535519.1 90961603 3977296 669510..673046 1 NC_007929.1 COG1196 [D] Chromosome segregation ATPases; chromosome partition protein 673046 smc 3977296 smc Lactobacillus salivarius UCC118 chromosome partition protein YP_535519.1 669510 D 364254 CDS YP_535520.1 90961604 3977297 673058..674329 1 NC_007929.1 COG0541 [U] signal recognition particle GTPase; cell division protein 674329 ftsY 3977297 ftsY Lactobacillus salivarius UCC118 cell division protein YP_535520.1 673058 D 364254 CDS YP_535521.1 90961605 3977298 674348..674686 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; signal recognition particle associated protein 674686 3977298 LSL_0628 Lactobacillus salivarius UCC118 signal recognition particle associated protein YP_535521.1 674348 D 364254 CDS YP_535522.1 90961606 3977299 674693..676141 1 NC_007929.1 COG0541 [U] signal recognition particle GTPase; signal recognition particle protein 676141 ffh 3977299 ffh Lactobacillus salivarius UCC118 signal recognition particle protein YP_535522.1 674693 D 364254 CDS YP_535523.1 90961607 3977300 676236..676511 1 NC_007929.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 676511 rpsP 3977300 rpsP Lactobacillus salivarius UCC118 30S ribosomal protein S16 YP_535523.1 676236 D 364254 CDS YP_535524.1 90961608 3977301 676521..676766 1 NC_007929.1 COG1837 [R] Predicted RNA-binding protein (contains KH domain); RNA binding protein 676766 3977301 LSL_0631 Lactobacillus salivarius UCC118 RNA binding protein YP_535524.1 676521 D 364254 CDS YP_535525.1 90961609 3977302 676851..677357 1 NC_007929.1 COG0806 [J] RimM protein, required for 16S rRNA processing; 16S rRNA processing protein 677357 rimM 3977302 rimM Lactobacillus salivarius UCC118 16S rRNA processing protein YP_535525.1 676851 D 364254 CDS YP_535526.1 90961610 3977303 677360..678112 1 NC_007929.1 COG0336 [J] tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 678112 trmD 3977303 trmD Lactobacillus salivarius UCC118 tRNA (guanine-N(1)-)-methyltransferase YP_535526.1 677360 D 364254 CDS YP_535527.1 90961611 3977304 678099..678695 1 NC_007929.1 COG1247 [M] Sortase and related acyltransferases; phosphinothricin N-acetyltransferase 678695 3977304 LSL_0634 Lactobacillus salivarius UCC118 phosphinothricin N-acetyltransferase YP_535527.1 678099 D 364254 CDS YP_535528.1 90961612 3977305 678692..680122 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 680122 3977305 LSL_0635 Lactobacillus salivarius UCC118 amino acid permease YP_535528.1 678692 D 364254 CDS YP_535529.1 90961613 3977306 680239..680595 1 NC_007929.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 680595 rplS 3977306 rplS Lactobacillus salivarius UCC118 50S ribosomal protein L19 YP_535529.1 680239 D 364254 CDS YP_535530.1 90961614 3977307 complement(680931..681185) 1 NC_007929.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 681185 rpsT 3977307 rpsT Lactobacillus salivarius UCC118 30S ribosomal protein S20 YP_535530.1 680931 R 364254 CDS YP_535531.1 90961615 3977308 681489..681758 1 NC_007929.1 COG0184 [J] Ribosomal protein S15P/S13E; 30S ribosomal protein S15 681758 rpsO 3977308 rpsO Lactobacillus salivarius UCC118 30S ribosomal protein S15 YP_535531.1 681489 D 364254 CDS YP_535532.1 90961616 3977309 681898..682770 1 NC_007929.1 COG0329 [EM] Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 682770 dapA 3977309 dapA Lactobacillus salivarius UCC118 dihydrodipicolinate synthase YP_535532.1 681898 D 364254 CDS YP_535533.1 90961617 3977310 682789..684486 1 NC_007929.1 COG0595 [R] Predicted hydrolase of the metallo-beta-lactamase superfamily; metallo-beta-lactamase superfamily protein 684486 3977310 LSL_0640 Lactobacillus salivarius UCC118 metallo-beta-lactamase superfamily protein YP_535533.1 682789 D 364254 CDS YP_535534.1 90961618 3977311 684538..685425 1 NC_007929.1 hypothetical protein 685425 3977311 LSL_0641 Lactobacillus salivarius UCC118 hypothetical protein YP_535534.1 684538 D 364254 CDS YP_535535.1 90961619 3977312 685773..686960 1 NC_007929.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 686960 tufB 3977312 tufB Lactobacillus salivarius UCC118 elongation factor Tu YP_535535.1 685773 D 364254 CDS YP_535536.1 90961620 3977313 687160..688470 1 NC_007929.1 COG0544 [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor, PPIase 688470 tig 3977313 tig Lactobacillus salivarius UCC118 trigger factor, PPIase YP_535536.1 687160 D 364254 CDS YP_535537.1 90961621 3977314 688685..689911 1 NC_007929.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 689911 clpX 3977314 clpX Lactobacillus salivarius UCC118 ATP-dependent protease ATP-binding subunit ClpX YP_535537.1 688685 D 364254 CDS YP_535538.1 90961622 3977315 690020..691441 1 NC_007929.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 691441 gnd 3977315 gnd Lactobacillus salivarius UCC118 6-phosphogluconate dehydrogenase YP_535538.1 690020 D 364254 CDS YP_535539.1 90961623 3977410 complement(691520..693196) 1 NC_007929.1 COG0595 [R] Predicted hydrolase of the metallo-beta-lactamase superfamily; metallo-beta-lactamase superfamily protein 693196 3977410 LSL_0646 Lactobacillus salivarius UCC118 metallo-beta-lactamase superfamily protein YP_535539.1 691520 R 364254 CDS YP_535540.1 90961624 3977411 complement(693201..693416) 1 NC_007929.1 COG5428 [S] Uncharacterized conserved small protein; hypothetical protein 693416 3977411 LSL_0647 Lactobacillus salivarius UCC118 hypothetical protein YP_535540.1 693201 R 364254 CDS YP_535541.1 90961625 3977412 693623..694126 1 NC_007929.1 hypothetical protein 694126 3977412 LSL_0648 Lactobacillus salivarius UCC118 hypothetical protein YP_535541.1 693623 D 364254 CDS YP_535542.1 90961626 3977413 complement(694232..694792) 1 NC_007929.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 694792 def 3977413 def Lactobacillus salivarius UCC118 peptide deformylase YP_535542.1 694232 R 364254 CDS YP_535543.1 90961627 3977414 694948..695832 1 NC_007929.1 lactate/malate dehydrogenase 695832 3977414 LSL_0650 Lactobacillus salivarius UCC118 lactate/malate dehydrogenase YP_535543.1 694948 D 364254 CDS YP_535544.1 90961628 3977415 695843..696118 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 696118 3977415 LSL_0651 Lactobacillus salivarius UCC118 hypothetical protein YP_535544.1 695843 D 364254 CDS YP_535545.1 90961629 3977416 696128..696907 1 NC_007929.1 COG0483 [G] Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family; myo-inositol-1(or 4)-monophosphatase 696907 3977416 LSL_0652 Lactobacillus salivarius UCC118 myo-inositol-1(or 4)-monophosphatase YP_535545.1 696128 D 364254 CDS YP_535546.1 90961630 3977417 697034..698875 1 NC_007929.1 COG1217 [T] Predicted membrane GTPase involved in stress response; GTP-binding protein 698875 typA 3977417 typA Lactobacillus salivarius UCC118 GTP-binding protein YP_535546.1 697034 D 364254 CDS YP_535547.1 90961631 3977418 699278..700270 1 NC_007929.1 COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component 700270 manX 3977418 manX Lactobacillus salivarius UCC118 PTS system, mannose-specific IIAB component YP_535547.1 699278 D 364254 CDS YP_535548.1 90961632 3977419 700291..701091 1 NC_007929.1 COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 701091 3977419 LSL_0655 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIC component YP_535548.1 700291 D 364254 CDS YP_535549.1 90961633 3977420 701112..702032 1 NC_007929.1 COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 702032 3977420 LSL_0656 Lactobacillus salivarius UCC118 PTS system, mannose-specific IID component YP_535549.1 701112 D 364254 CDS YP_535550.1 90961634 3977421 702331..703530 1 NC_007929.1 COG0772 [D] Bacterial cell division membrane protein; cell division protein 703530 ftsW 3977421 ftsW Lactobacillus salivarius UCC118 cell division protein YP_535550.1 702331 D 364254 CDS YP_535551.1 90961635 3977422 703561..706986 1 NC_007929.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 706986 pycA 3977422 pycA Lactobacillus salivarius UCC118 pyruvate carboxylase YP_535551.1 703561 D 364254 CDS YP_535552.1 90961636 3977423 707146..707424 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 707424 3977423 LSL_0659 Lactobacillus salivarius UCC118 hypothetical protein YP_535552.1 707146 D 364254 CDS YP_535553.1 90961637 3977424 707435..707995 1 NC_007929.1 COG0742 [L] N6-adenine-specific methylase; methyltransferase 707995 3977424 LSL_0660 Lactobacillus salivarius UCC118 methyltransferase YP_535553.1 707435 D 364254 CDS YP_535554.1 90961638 3977425 707998..708480 1 NC_007929.1 COG0669 [H] Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 708480 coaD 3977425 coaD Lactobacillus salivarius UCC118 phosphopantetheine adenylyltransferase YP_535554.1 707998 D 364254 CDS YP_535555.1 90961639 3977426 708477..709511 1 NC_007929.1 COG3480 [T] Predicted secreted protein containing a PDZ domain; ATP-dependent protease La 709511 lon 3977426 lon Lactobacillus salivarius UCC118 ATP-dependent protease La YP_535555.1 708477 D 364254 CDS YP_535556.1 90961640 3977427 709824..710537 1 NC_007929.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 710537 purC 3977427 purC Lactobacillus salivarius UCC118 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_535556.1 709824 D 364254 CDS YP_535557.1 90961641 3977428 710556..710804 1 NC_007929.1 COG1828 [F] Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component; phosphoribosylformylglycinamidine synthase 710804 purS 3977428 purS Lactobacillus salivarius UCC118 phosphoribosylformylglycinamidine synthase YP_535557.1 710556 D 364254 CDS YP_535558.1 90961642 3976893 710804..711478 1 NC_007929.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 711478 purQ 3976893 purQ Lactobacillus salivarius UCC118 phosphoribosylformylglycinamidine synthase I YP_535558.1 710804 D 364254 CDS YP_535559.1 90961643 3976894 711480..713705 1 NC_007929.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 713705 purL 3976894 purL Lactobacillus salivarius UCC118 phosphoribosylformylglycinamidine synthase II YP_535559.1 711480 D 364254 CDS YP_535560.1 90961644 3976895 713681..715132 1 NC_007929.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 715132 purF 3976895 purF Lactobacillus salivarius UCC118 amidophosphoribosyltransferase YP_535560.1 713681 D 364254 CDS YP_535561.1 90961645 3976896 715133..716170 1 NC_007929.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 716170 purM 3976896 purM Lactobacillus salivarius UCC118 phosphoribosylaminoimidazole synthetase YP_535561.1 715133 D 364254 CDS YP_535562.1 90961646 3976897 716183..716770 1 NC_007929.1 COG0299 [F] Folate-dependent phosphoribosylglycinamide formyltransferase PurN; phosphoribosylglycinamide formyltransferase 716770 purN 3976897 purN Lactobacillus salivarius UCC118 phosphoribosylglycinamide formyltransferase YP_535562.1 716183 D 364254 CDS YP_535563.1 90961647 3976898 716782..718320 1 NC_007929.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 718320 purH 3976898 purH Lactobacillus salivarius UCC118 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_535563.1 716782 D 364254 CDS YP_535564.1 90961648 3976899 718337..719593 1 NC_007929.1 COG0151 [F] Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 719593 purD 3976899 purD Lactobacillus salivarius UCC118 phosphoribosylamine--glycine ligase YP_535564.1 718337 D 364254 CDS YP_535565.1 90961649 3976900 719767..720840 1 NC_007929.1 hypothetical protein 720840 3976900 LSL_0672 Lactobacillus salivarius UCC118 hypothetical protein YP_535565.1 719767 D 364254 CDS YP_535566.1 90961650 3976901 complement(720907..722400) 1 NC_007929.1 COG1502 [I] Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; cardiolipin synthetase 722400 cls 3976901 cls Lactobacillus salivarius UCC118 cardiolipin synthetase YP_535566.1 720907 R 364254 CDS YP_535567.1 90961651 3976902 722513..723400 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 723400 3976902 LSL_0674 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_535567.1 722513 D 364254 CDS YP_535568.1 90961652 3976904 complement(723653..723862) 1 NC_007929.1 hypothetical protein 723862 3976904 LSL_0675 Lactobacillus salivarius UCC118 hypothetical protein YP_535568.1 723653 R 364254 CDS YP_535569.1 90961653 3976905 complement(723930..724619) 1 NC_007929.1 COG1011 [R] Predicted hydrolase (HAD superfamily); HAD superfamily hydrolase 724619 3976905 LSL_0676 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_535569.1 723930 R 364254 CDS YP_535570.1 90961654 3976906 725008..726699 1 NC_007929.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 726699 argS 3976906 argS Lactobacillus salivarius UCC118 arginyl-tRNA synthetase YP_535570.1 725008 D 364254 CDS YP_535571.1 90961655 3976907 726811..727500 1 NC_007929.1 COG1555 [L] DNA uptake protein and related DNA-binding proteins; ComE operon protein 1 727500 comEA 3976907 comEA Lactobacillus salivarius UCC118 ComE operon protein 1 YP_535571.1 726811 D 364254 CDS YP_535572.1 90961656 3976908 727544..728020 1 NC_007929.1 COG2131 [F] Deoxycytidylate deaminase; ComE operon protein 2 728020 comEB 3976908 comEB Lactobacillus salivarius UCC118 ComE operon protein 2 YP_535572.1 727544 D 364254 CDS YP_535573.1 90961657 3976909 728033..730294 1 NC_007929.1 COG2248 [R] Predicted hydrolase (metallo-beta-lactamase superfamily); ComE operon protein 3 730294 3976909 LSL_0680 Lactobacillus salivarius UCC118 ComE operon protein 3 YP_535573.1 728033 D 364254 CDS YP_535574.1 90961658 3976910 730304..731326 1 NC_007929.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 731326 holA 3976910 holA Lactobacillus salivarius UCC118 DNA polymerase III subunit delta YP_535574.1 730304 D 364254 CDS YP_535575.1 90961659 3976911 complement(731345..732391) 1 NC_007929.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 732391 3976911 LSL_0682 Lactobacillus salivarius UCC118 isopentenyl pyrophosphate isomerase YP_535575.1 731345 R 364254 CDS YP_535576.1 90961660 3977203 complement(732407..733474) 1 NC_007929.1 COG1577 [I] Mevalonate kinase; phosphomevalonate kinase 733474 3977203 LSL_0683 Lactobacillus salivarius UCC118 phosphomevalonate kinase YP_535576.1 732407 R 364254 CDS YP_535577.1 90961661 3977204 complement(733499..734467) 1 NC_007929.1 COG3407 [I] Mevalonate pyrophosphate decarboxylase; diphosphomevalonate decarboxylase 734467 3977204 LSL_0684 Lactobacillus salivarius UCC118 diphosphomevalonate decarboxylase YP_535577.1 733499 R 364254 CDS YP_535578.1 90961662 3977205 complement(734480..735424) 1 NC_007929.1 COG1577 [I] Mevalonate kinase; mevalonate kinase 735424 eRG 3977205 eRG Lactobacillus salivarius UCC118 mevalonate kinase YP_535578.1 734480 R 364254 CDS YP_535579.1 90961663 3977206 735672..738461 1 NC_007929.1 COG1199 [KL] Rad3-related DNA helicases; ATP-dependent helicase DinG 738461 dinG 3977206 dinG Lactobacillus salivarius UCC118 ATP-dependent helicase DinG YP_535579.1 735672 D 364254 CDS YP_535580.1 90961664 3977207 738585..739088 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 739088 3977207 LSL_0687 Lactobacillus salivarius UCC118 hypothetical protein YP_535580.1 738585 D 364254 CDS YP_535581.1 90961665 3977208 739106..740287 1 NC_007929.1 COG0436 [E] Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 740287 3977208 LSL_0688 Lactobacillus salivarius UCC118 aspartate aminotransferase YP_535581.1 739106 D 364254 CDS YP_535582.1 90961666 3977209 740300..741601 1 NC_007929.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 741601 asnC 3977209 asnC Lactobacillus salivarius UCC118 asparaginyl-tRNA synthetase YP_535582.1 740300 D 364254 CDS YP_535583.1 90961667 3977210 741709..742416 1 NC_007929.1 COG3935 [L] primosome component and related proteins; DNA replication protein dnaD 742416 3977210 LSL_0690 Lactobacillus salivarius UCC118 DNA replication protein dnaD YP_535583.1 741709 D 364254 CDS YP_535584.1 90961668 3977211 742431..743072 1 NC_007929.1 COG0177 [L] Predicted EndoIII-related endonuclease; endonuclease III 743072 nth 3977211 nth Lactobacillus salivarius UCC118 endonuclease III YP_535584.1 742431 D 364254 CDS YP_535585.1 90961669 3977212 743128..743646 1 NC_007929.1 COG0225 [O] Peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 743646 msrA 3977212 msrA Lactobacillus salivarius UCC118 peptide methionine sulfoxide reductase YP_535585.1 743128 D 364254 CDS YP_535586.1 90961670 3977213 743670..744542 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 744542 3977213 LSL_0693 Lactobacillus salivarius UCC118 hypothetical protein YP_535586.1 743670 D 364254 CDS YP_535587.1 90961671 3977214 744613..745620 1 NC_007929.1 hypothetical protein 745620 3977214 LSL_0694 Lactobacillus salivarius UCC118 hypothetical protein YP_535587.1 744613 D 364254 CDS YP_535588.1 90961672 3977215 745617..746408 1 NC_007929.1 COG3774 [M] Mannosyltransferase OCH1 and related enzymes; glycosyltransferase 746408 rfaG 3977215 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535588.1 745617 D 364254 CDS YP_535589.1 90961673 3977216 746395..747342 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 747342 rfaG 3977216 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535589.1 746395 D 364254 CDS YP_535590.1 90961674 3977217 747358..747543 1 NC_007929.1 hypothetical protein 747543 3977217 LSL_0697 Lactobacillus salivarius UCC118 hypothetical protein YP_535590.1 747358 D 364254 CDS YP_535591.1 90961675 3977218 747546..747731 1 NC_007929.1 hypothetical protein 747731 3977218 LSL_0698 Lactobacillus salivarius UCC118 hypothetical protein YP_535591.1 747546 D 364254 CDS YP_535592.1 90961676 3977219 complement(747834..748646) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 748646 3977219 LSL_0699 Lactobacillus salivarius UCC118 hypothetical protein YP_535592.1 747834 R 364254 CDS YP_535593.1 90961677 3977220 748897..749082 1 NC_007929.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 749082 rpsU 3977220 rpsU Lactobacillus salivarius UCC118 30S ribosomal protein S21 YP_535593.1 748897 D 364254 CDS YP_535594.1 90961678 3977221 749101..749544 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; GatB/Yqey domain-containing protein 749544 3977221 LSL_0701 Lactobacillus salivarius UCC118 GatB/Yqey domain-containing protein YP_535594.1 749101 D 364254 CDS YP_535595.1 90961679 3976931 749646..749789 1 NC_007929.1 hypothetical protein 749789 3976931 LSL_0702 Lactobacillus salivarius UCC118 hypothetical protein YP_535595.1 749646 D 364254 CDS YP_535596.1 90961680 3976932 complement(749870..750700) 1 NC_007929.1 integrase/recombinase xerD 750700 3976932 LSL_0703 Lactobacillus salivarius UCC118 integrase/recombinase xerD YP_535596.1 749870 R 364254 CDS YP_535597.1 90961681 3976933 complement(750705..751601) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 751601 3976933 LSL_0704 Lactobacillus salivarius UCC118 hypothetical protein YP_535597.1 750705 R 364254 CDS YP_535598.1 90961682 3976934 751777..752565 1 NC_007929.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 752565 dapB 3976934 dapB Lactobacillus salivarius UCC118 dihydrodipicolinate reductase YP_535598.1 751777 D 364254 CDS YP_535599.1 90961683 3976935 752562..753776 1 NC_007929.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 753776 pcnB 3976935 pcnB Lactobacillus salivarius UCC118 tRNA CCA-pyrophosphorylase YP_535599.1 752562 D 364254 CDS YP_535600.1 90961684 3976936 753773..755680 1 NC_007929.1 COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 755680 3976936 LSL_0707 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535600.1 753773 D 364254 CDS YP_535601.1 90961685 3976937 755698..756654 1 NC_007929.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 756654 thyA 3976937 thyA Lactobacillus salivarius UCC118 thymidylate synthase YP_535601.1 755698 D 364254 CDS YP_535602.1 90961686 3976938 756672..757175 1 NC_007929.1 COG0262 [H] Dihydrofolate reductase; dihydrofolate reductase 757175 folA 3976938 folA Lactobacillus salivarius UCC118 dihydrofolate reductase YP_535602.1 756672 D 364254 CDS YP_535603.1 90961687 3976939 757352..758212 1 NC_007929.1 COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 758212 3976939 LSL_0710 Lactobacillus salivarius UCC118 oxidoreductase YP_535603.1 757352 D 364254 CDS YP_535604.1 90961688 3976940 758214..758675 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 758675 3976940 LSL_0711 Lactobacillus salivarius UCC118 MerR family transcriptional regulator YP_535604.1 758214 D 364254 CDS YP_535605.1 90961689 3976941 758679..759635 1 NC_007929.1 COG3573 [R] Predicted oxidoreductase; oxidoreductase 759635 3976941 LSL_0712 Lactobacillus salivarius UCC118 oxidoreductase YP_535605.1 758679 D 364254 CDS YP_535606.1 90961690 3976942 complement(759718..760338) 1 NC_007929.1 hypothetical protein 760338 3976942 LSL_0713 Lactobacillus salivarius UCC118 hypothetical protein YP_535606.1 759718 R 364254 CDS YP_535607.1 90961691 3976943 760427..761356 1 NC_007929.1 COG2755 [E] Lysophospholipase L1 and related esterases; lipase/acylhydrolase 761356 3976943 LSL_0714 Lactobacillus salivarius UCC118 lipase/acylhydrolase YP_535607.1 760427 D 364254 CDS YP_535608.1 90961692 3976944 761361..761960 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 761960 3976944 LSL_0715 Lactobacillus salivarius UCC118 hypothetical protein YP_535608.1 761361 D 364254 CDS YP_535609.1 90961693 3976945 761972..762199 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 762199 3976945 LSL_0716 Lactobacillus salivarius UCC118 hypothetical protein YP_535609.1 761972 D 364254 CDS YP_535610.1 90961694 3976946 762258..763115 1 NC_007929.1 COG1160 [R] Predicted GTPases; GTP-binding protein 763115 3976946 LSL_0717 Lactobacillus salivarius UCC118 GTP-binding protein YP_535610.1 762258 D 364254 CDS YP_535611.1 90961695 3976947 763125..763892 1 NC_007929.1 COG0164 [L] Ribonuclease HII; ribonuclease HII 763892 rnhB 3976947 rnhB Lactobacillus salivarius UCC118 ribonuclease HII YP_535611.1 763125 D 364254 CDS YP_535612.1 90961696 3976948 763957..764817 1 NC_007929.1 COG0758 [LU] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA processing protein 764817 3976948 LSL_0719 Lactobacillus salivarius UCC118 DNA processing protein YP_535612.1 763957 D 364254 CDS YP_535613.1 90961697 3976949 765005..767116 1 NC_007929.1 COG0550 [L] Topoisomerase IA; DNA topoisomerase I 767116 topA 3976949 topA Lactobacillus salivarius UCC118 DNA topoisomerase I YP_535613.1 765005 D 364254 CDS YP_535614.1 90961698 3976950 767139..768449 1 NC_007929.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 768449 3976950 LSL_0721 Lactobacillus salivarius UCC118 tRNA (uracil-5-)-methyltransferase Gid YP_535614.1 767139 D 364254 CDS YP_535615.1 90961699 3977458 768571..769974 1 NC_007929.1 COG3775 [G] Phosphotransferase system, galactitol-specific IIC component; PTS system, galactitol-specific IIC component 769974 3977458 LSL_0722 Lactobacillus salivarius UCC118 PTS system, galactitol-specific IIC component YP_535615.1 768571 D 364254 CDS YP_535616.1 90961700 3977459 complement(770017..770634) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 770634 3977459 LSL_0723 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_535616.1 770017 R 364254 CDS YP_535617.1 90961701 3977460 770802..771686 1 NC_007929.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 771686 3977460 LSL_0724 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535617.1 770802 D 364254 CDS YP_535618.1 90961702 3977461 771706..773310 1 NC_007929.1 COG3559 [M] exporter of polyketide antibiotics; ABC transporter permease 773310 3977461 LSL_0725 Lactobacillus salivarius UCC118 ABC transporter permease YP_535618.1 771706 D 364254 CDS YP_535619.1 90961703 3977462 773469..774125 1 NC_007929.1 COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 774125 gpmB 3977462 gpmB Lactobacillus salivarius UCC118 phosphoglycerate mutase YP_535619.1 773469 D 364254 CDS YP_535620.1 90961704 3977463 774141..774809 1 NC_007929.1 COG0457 [R] FOG: TPR repeat; hypothetical protein 774809 3977463 LSL_0727 Lactobacillus salivarius UCC118 hypothetical protein YP_535620.1 774141 D 364254 CDS YP_535621.1 90961705 3977464 774802..777276 1 NC_007929.1 COG0507 [L] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; exodeoxyribonuclease V alpha chain 777276 recD 3977464 recD Lactobacillus salivarius UCC118 exodeoxyribonuclease V alpha chain YP_535621.1 774802 D 364254 CDS YP_535622.1 90961706 3977465 complement(777765..778886) 1 NC_007929.1 COG0582 [L] Integrase; phage integrase 778886 xerC 3977465 xerC Lactobacillus salivarius UCC118 phage integrase YP_535622.1 777765 R 364254 CDS YP_535623.1 90961707 3977466 complement(778905..779087) 1 NC_007929.1 hypothetical protein 779087 3977466 LSL_0730 Lactobacillus salivarius UCC118 hypothetical protein YP_535623.1 778905 R 364254 CDS YP_535624.1 90961708 3977467 complement(779231..779368) 1 NC_007929.1 hypothetical protein 779368 3977467 LSL_0731 Lactobacillus salivarius UCC118 hypothetical protein YP_535624.1 779231 R 364254 CDS YP_535625.1 90961709 3977468 complement(780316..780747) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 780747 3977468 LSL_0732 Lactobacillus salivarius UCC118 IS200/IS605 family transposase YP_535625.1 780316 R 364254 CDS YP_535626.1 90961710 3977469 780847..782124 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 782124 3977469 LSL_0733 Lactobacillus salivarius UCC118 IS200/IS605 family transposase YP_535626.1 780847 D 364254 CDS YP_535627.1 90961711 3977470 782443..782880 1 NC_007929.1 hypothetical protein 782880 3977470 LSL_0734 Lactobacillus salivarius UCC118 hypothetical protein YP_535627.1 782443 D 364254 CDS YP_535628.1 90961712 3977471 complement(782877..783053) 1 NC_007929.1 hypothetical protein 783053 3977471 LSL_0735 Lactobacillus salivarius UCC118 hypothetical protein YP_535628.1 782877 R 364254 CDS YP_535629.1 90961713 3977472 complement(783066..783458) 1 NC_007929.1 hypothetical protein 783458 3977472 LSL_0736 Lactobacillus salivarius UCC118 hypothetical protein YP_535629.1 783066 R 364254 CDS YP_535630.1 90961714 3977473 complement(783539..783682) 1 NC_007929.1 hypothetical protein 783682 3977473 LSL_0737 Lactobacillus salivarius UCC118 hypothetical protein YP_535630.1 783539 R 364254 CDS YP_535631.1 90961715 3977474 complement(783816..784106) 1 NC_007929.1 hypothetical protein 784106 3977474 LSL_0738 Lactobacillus salivarius UCC118 hypothetical protein YP_535631.1 783816 R 364254 CDS YP_535632.1 90961716 3977475 complement(784134..784286) 1 NC_007929.1 hypothetical protein 784286 3977475 LSL_0739 Lactobacillus salivarius UCC118 hypothetical protein YP_535632.1 784134 R 364254 CDS YP_535633.1 90961717 3976819 complement(784307..784957) 1 NC_007929.1 phage super infection exclusion 784957 3976819 LSL_0740 Lactobacillus salivarius UCC118 phage super infection exclusion YP_535633.1 784307 R 364254 CDS YP_535634.1 90961718 3976820 complement(784990..785289) 1 NC_007929.1 COG2856 [E] Predicted Zn peptidase; phage cI like repressor 785289 3976820 LSL_0741 Lactobacillus salivarius UCC118 phage cI like repressor YP_535634.1 784990 R 364254 CDS YP_535635.1 90961719 3976821 complement(785426..785821) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; Cro/CI family phage transcriptional regulator 785821 3976821 LSL_0742 Lactobacillus salivarius UCC118 Cro/CI family phage transcriptional regulator YP_535635.1 785426 R 364254 CDS YP_535636.1 90961720 3976822 785875..786024 1 NC_007929.1 hypothetical protein 786024 3976822 LSL_0743 Lactobacillus salivarius UCC118 hypothetical protein YP_535636.1 785875 D 364254 CDS YP_535637.1 90961721 3976823 786003..786353 1 NC_007929.1 phage antirepressor 786353 3976823 LSL_0744 Lactobacillus salivarius UCC118 phage antirepressor YP_535637.1 786003 D 364254 CDS YP_535638.1 90961722 3976824 786366..786497 1 NC_007929.1 phage antirepressor 786497 3976824 LSL_0745 Lactobacillus salivarius UCC118 phage antirepressor YP_535638.1 786366 D 364254 CDS YP_535639.1 90961723 3976825 786513..786944 1 NC_007929.1 phage antirepressor 786944 3976825 LSL_0746 Lactobacillus salivarius UCC118 phage antirepressor YP_535639.1 786513 D 364254 CDS YP_535640.1 90961724 3976826 787035..787229 1 NC_007929.1 hypothetical protein 787229 3976826 LSL_0747 Lactobacillus salivarius UCC118 hypothetical protein YP_535640.1 787035 D 364254 CDS YP_535641.1 90961725 3976827 787204..787515 1 NC_007929.1 hypothetical protein 787515 3976827 LSL_0748 Lactobacillus salivarius UCC118 hypothetical protein YP_535641.1 787204 D 364254 CDS YP_535642.1 90961726 3976828 787622..787795 1 NC_007929.1 hypothetical protein 787795 3976828 LSL_0749 Lactobacillus salivarius UCC118 hypothetical protein YP_535642.1 787622 D 364254 CDS YP_535643.1 90961727 3976829 787868..788026 1 NC_007929.1 hypothetical protein 788026 3976829 LSL_0750 Lactobacillus salivarius UCC118 hypothetical protein YP_535643.1 787868 D 364254 CDS YP_535644.1 90961728 3976830 788013..788600 1 NC_007929.1 hypothetical protein 788600 3976830 LSL_0751 Lactobacillus salivarius UCC118 hypothetical protein YP_535644.1 788013 D 364254 CDS YP_535645.1 90961729 3976831 788674..789897 1 NC_007929.1 COG0553 [KL] Superfamily II DNA/RNA helicases, SNF2 family; phage helicase 789897 3976831 LSL_0752 Lactobacillus salivarius UCC118 phage helicase YP_535645.1 788674 D 364254 CDS YP_535646.1 90961730 3976832 789869..790102 1 NC_007929.1 hypothetical protein 790102 3976832 LSL_0753 Lactobacillus salivarius UCC118 hypothetical protein YP_535646.1 789869 D 364254 CDS YP_535647.1 90961731 3976833 790099..790413 1 NC_007929.1 hypothetical protein 790413 3976833 LSL_0754 Lactobacillus salivarius UCC118 hypothetical protein YP_535647.1 790099 D 364254 CDS YP_535648.1 90961732 3976834 790413..790826 1 NC_007929.1 hypothetical protein 790826 3976834 LSL_0755 Lactobacillus salivarius UCC118 hypothetical protein YP_535648.1 790413 D 364254 CDS YP_535649.1 90961733 3976835 790877..792457 1 NC_007929.1 phage NTP-binding protein 792457 3976835 LSL_0756 Lactobacillus salivarius UCC118 phage NTP-binding protein YP_535649.1 790877 D 364254 CDS YP_535650.1 90961734 3976836 792478..792945 1 NC_007929.1 hypothetical protein 792945 3976836 LSL_0757 Lactobacillus salivarius UCC118 hypothetical protein YP_535650.1 792478 D 364254 CDS YP_535651.1 90961735 3976837 793126..794823 1 NC_007929.1 phage DNA polymerase 794823 3976837 LSL_0758 Lactobacillus salivarius UCC118 phage DNA polymerase YP_535651.1 793126 D 364254 CDS YP_535652.1 90961736 3978006 794824..795855 1 NC_007929.1 phage primase 795855 3978006 LSL_0759 Lactobacillus salivarius UCC118 phage primase YP_535652.1 794824 D 364254 CDS YP_535653.1 90961737 3978007 795859..796728 1 NC_007929.1 COG0433 [R] Predicted ATPase; phage DNA primase 796728 3978007 LSL_0760 Lactobacillus salivarius UCC118 phage DNA primase YP_535653.1 795859 D 364254 CDS YP_535654.1 90961738 3978008 796744..796968 1 NC_007929.1 hypothetical protein 796968 3978008 LSL_0761 Lactobacillus salivarius UCC118 hypothetical protein YP_535654.1 796744 D 364254 CDS YP_535655.1 90961739 3978009 796988..797215 1 NC_007929.1 hypothetical protein 797215 3978009 LSL_0762 Lactobacillus salivarius UCC118 hypothetical protein YP_535655.1 796988 D 364254 CDS YP_535656.1 90961740 3978011 797363..797617 1 NC_007929.1 hypothetical protein 797617 3978011 LSL_0763 Lactobacillus salivarius UCC118 hypothetical protein YP_535656.1 797363 D 364254 CDS YP_535657.1 90961741 3978012 797586..798197 1 NC_007929.1 hypothetical protein 798197 3978012 LSL_0764 Lactobacillus salivarius UCC118 hypothetical protein YP_535657.1 797586 D 364254 CDS YP_535658.1 90961742 3978013 798199..799146 1 NC_007929.1 COG0582 [L] Integrase; phage integrase 799146 xerC 3978013 xerC Lactobacillus salivarius UCC118 phage integrase YP_535658.1 798199 D 364254 CDS YP_535659.1 90961743 3978014 799143..799535 1 NC_007929.1 hypothetical protein 799535 3978014 LSL_0766 Lactobacillus salivarius UCC118 hypothetical protein YP_535659.1 799143 D 364254 CDS YP_535660.1 90961744 3978015 799558..800211 1 NC_007929.1 COG0286 [V] type I restriction-modification system methyltransferase subunit; hypothetical protein 800211 3978015 LSL_0767 Lactobacillus salivarius UCC118 hypothetical protein YP_535660.1 799558 D 364254 CDS YP_535661.1 90961745 3978016 800204..800512 1 NC_007929.1 hypothetical protein 800512 3978016 LSL_0768 Lactobacillus salivarius UCC118 hypothetical protein YP_535661.1 800204 D 364254 CDS YP_535662.1 90961746 3978017 800529..800840 1 NC_007929.1 hypothetical protein 800840 3978017 LSL_0769 Lactobacillus salivarius UCC118 hypothetical protein YP_535662.1 800529 D 364254 CDS YP_535663.1 90961747 3978018 800941..801201 1 NC_007929.1 hypothetical protein 801201 3978018 LSL_0770 Lactobacillus salivarius UCC118 hypothetical protein YP_535663.1 800941 D 364254 CDS YP_535664.1 90961748 3978019 801239..801547 1 NC_007929.1 hypothetical protein 801547 3978019 LSL_0771 Lactobacillus salivarius UCC118 hypothetical protein YP_535664.1 801239 D 364254 CDS YP_535665.1 90961749 3978020 801537..801773 1 NC_007929.1 hypothetical protein 801773 3978020 LSL_0772 Lactobacillus salivarius UCC118 hypothetical protein YP_535665.1 801537 D 364254 CDS YP_535666.1 90961750 3978021 801783..801941 1 NC_007929.1 hypothetical protein 801941 3978021 LSL_0773 Lactobacillus salivarius UCC118 hypothetical protein YP_535666.1 801783 D 364254 CDS YP_535667.1 90961751 3978022 801954..802172 1 NC_007929.1 hypothetical protein 802172 3978022 LSL_0774 Lactobacillus salivarius UCC118 hypothetical protein YP_535667.1 801954 D 364254 CDS YP_535668.1 90961752 3978023 802633..802767 1 NC_007929.1 hypothetical protein 802767 3978023 LSL_0775 Lactobacillus salivarius UCC118 hypothetical protein YP_535668.1 802633 D 364254 CDS YP_535669.1 90961753 3978024 802779..803021 1 NC_007929.1 hypothetical protein 803021 3978024 LSL_0776 Lactobacillus salivarius UCC118 hypothetical protein YP_535669.1 802779 D 364254 CDS YP_535670.1 90961754 3977335 803086..803373 1 NC_007929.1 hypothetical protein 803373 3977335 LSL_0777 Lactobacillus salivarius UCC118 hypothetical protein YP_535670.1 803086 D 364254 CDS YP_535671.1 90961755 3977336 803386..803703 1 NC_007929.1 hypothetical protein 803703 3977336 LSL_0778 Lactobacillus salivarius UCC118 hypothetical protein YP_535671.1 803386 D 364254 CDS YP_535672.1 90961756 3977337 804340..804759 1 NC_007929.1 hypothetical protein 804759 3977337 LSL_0779 Lactobacillus salivarius UCC118 hypothetical protein YP_535672.1 804340 D 364254 CDS YP_535673.1 90961757 3977338 805018..805248 1 NC_007929.1 hypothetical protein 805248 3977338 LSL_0780 Lactobacillus salivarius UCC118 hypothetical protein YP_535673.1 805018 D 364254 CDS YP_535674.1 90961758 3977339 805250..805576 1 NC_007929.1 COG1403 [V] Restriction endonuclease; phage endonuclease 805576 mcrA 3977339 mcrA Lactobacillus salivarius UCC118 phage endonuclease YP_535674.1 805250 D 364254 CDS YP_535675.1 90961759 3977340 805701..806153 1 NC_007929.1 COG3728 [L] phage terminase, small subunit; phage terminase small subunit 806153 3977340 LSL_0782 Lactobacillus salivarius UCC118 phage terminase small subunit YP_535675.1 805701 D 364254 CDS YP_535676.1 90961760 3977341 806143..807909 1 NC_007929.1 COG4626 [R] phage terminase-like protein, large subunit; terminase large subunit 807909 3977341 LSL_0783 Lactobacillus salivarius UCC118 terminase large subunit YP_535676.1 806143 D 364254 CDS YP_535677.1 90961761 3977342 807922..809166 1 NC_007929.1 COG4672 [S] phage-related protein; portal protein 809166 3977342 LSL_0784 Lactobacillus salivarius UCC118 portal protein YP_535677.1 807922 D 364254 CDS YP_535678.1 90961762 3977343 809102..809851 1 NC_007929.1 COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 809851 clpP 3977343 clpP Lactobacillus salivarius UCC118 ATP-dependent Clp protease proteolytic subunit YP_535678.1 809102 D 364254 CDS YP_535679.1 90961763 3977344 809848..810978 1 NC_007929.1 phage prohead protease 810978 3977344 LSL_0786 Lactobacillus salivarius UCC118 phage prohead protease YP_535679.1 809848 D 364254 CDS YP_535680.1 90961764 3977345 811170..811490 1 NC_007929.1 phage DNA packaging 811490 3977345 LSL_0787 Lactobacillus salivarius UCC118 phage DNA packaging YP_535680.1 811170 D 364254 CDS YP_535681.1 90961765 3977346 811480..811824 1 NC_007929.1 phage head-tail joining protein 811824 3977346 LSL_0788 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535681.1 811480 D 364254 CDS YP_535682.1 90961766 3977347 811836..812258 1 NC_007929.1 phage head-tail joining protein 812258 3977347 LSL_0789 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535682.1 811836 D 364254 CDS YP_535683.1 90961767 3977348 812255..812626 1 NC_007929.1 phage head-tail joining protein 812626 3977348 LSL_0790 Lactobacillus salivarius UCC118 phage head-tail joining protein YP_535683.1 812255 D 364254 CDS YP_535684.1 90961768 3977349 812638..813288 1 NC_007929.1 phage major tail protein 813288 3977349 LSL_0791 Lactobacillus salivarius UCC118 phage major tail protein YP_535684.1 812638 D 364254 CDS YP_535685.1 90961769 3977350 813285..813674 1 NC_007929.1 hypothetical protein 813674 3977350 LSL_0792 Lactobacillus salivarius UCC118 hypothetical protein YP_535685.1 813285 D 364254 CDS YP_535686.1 90961770 3977351 813722..813847 1 NC_007929.1 hypothetical protein 813847 3977351 LSL_0793 Lactobacillus salivarius UCC118 hypothetical protein YP_535686.1 813722 D 364254 CDS YP_535687.1 90961771 3977352 813863..817687 1 NC_007929.1 COG5283 [S] phage-related tail protein; phage tail tape mesure protein 817687 3977352 LSL_0794 Lactobacillus salivarius UCC118 phage tail tape mesure protein YP_535687.1 813863 D 364254 CDS YP_535688.1 90961772 3977353 817699..818514 1 NC_007929.1 hypothetical protein 818514 3977353 LSL_0795 Lactobacillus salivarius UCC118 hypothetical protein YP_535688.1 817699 D 364254 CDS YP_535689.1 90961773 3977627 818514..820364 1 NC_007929.1 hypothetical protein 820364 3977627 LSL_0796 Lactobacillus salivarius UCC118 hypothetical protein YP_535689.1 818514 D 364254 CDS YP_535690.1 90961774 3977628 820368..821126 1 NC_007929.1 COG3757 [M] Lyzozyme M1 (1,4-beta-N-acetylmuramidase); phage lysin 821126 3977628 LSL_0797 Lactobacillus salivarius UCC118 phage lysin YP_535690.1 820368 D 364254 CDS YP_535691.1 90961775 3977629 821278..821556 1 NC_007929.1 hypothetical protein 821556 3977629 LSL_0798 Lactobacillus salivarius UCC118 hypothetical protein YP_535691.1 821278 D 364254 CDS YP_535692.1 90961776 3977630 821556..822632 1 NC_007929.1 phage minor head protein 822632 3977630 LSL_0799 Lactobacillus salivarius UCC118 phage minor head protein YP_535692.1 821556 D 364254 CDS YP_535693.1 90961777 3977631 822713..823108 1 NC_007929.1 hypothetical protein 823108 3977631 LSL_0800 Lactobacillus salivarius UCC118 hypothetical protein YP_535693.1 822713 D 364254 CDS YP_535694.1 90961778 3977632 823123..823524 1 NC_007929.1 hypothetical protein 823524 3977632 LSL_0801 Lactobacillus salivarius UCC118 hypothetical protein YP_535694.1 823123 D 364254 CDS YP_535695.1 90961779 3977633 823526..823708 1 NC_007929.1 hypothetical protein 823708 3977633 LSL_0802 Lactobacillus salivarius UCC118 hypothetical protein YP_535695.1 823526 D 364254 CDS YP_535696.1 90961780 3977634 823761..824066 1 NC_007929.1 hypothetical protein 824066 3977634 LSL_0803 Lactobacillus salivarius UCC118 hypothetical protein YP_535696.1 823761 D 364254 CDS YP_535697.1 90961781 3977635 824063..824389 1 NC_007929.1 hypothetical protein 824389 3977635 LSL_0804 Lactobacillus salivarius UCC118 hypothetical protein YP_535697.1 824063 D 364254 CDS YP_535698.1 90961782 3977636 824401..825669 1 NC_007929.1 COG1388 [M] FOG: LysM repeat; phage lysin 825669 3977636 LSL_0805 Lactobacillus salivarius UCC118 phage lysin YP_535698.1 824401 D 364254 CDS YP_535699.1 90961783 3977638 826208..826369 1 NC_007929.1 hypothetical protein 826369 3977638 LSL_0806 Lactobacillus salivarius UCC118 hypothetical protein YP_535699.1 826208 D 364254 CDS YP_535700.1 90961784 3977639 complement(826349..826720) 1 NC_007929.1 hypothetical protein 826720 3977639 LSL_0807 Lactobacillus salivarius UCC118 hypothetical protein YP_535700.1 826349 R 364254 CDS YP_535701.1 90961785 3977640 complement(826724..826834) 1 NC_007929.1 hypothetical protein 826834 3977640 LSL_0808 Lactobacillus salivarius UCC118 hypothetical protein YP_535701.1 826724 R 364254 CDS YP_535702.1 90961786 3977641 826829..826981 1 NC_007929.1 hypothetical protein 826981 3977641 LSL_0809 Lactobacillus salivarius UCC118 hypothetical protein YP_535702.1 826829 D 364254 CDS YP_535703.1 90961787 3977642 826972..827733 1 NC_007929.1 COG0566 [J] rRNA methylases; 23S rRNA methyltransferase 827733 spoU 3977642 spoU Lactobacillus salivarius UCC118 23S rRNA methyltransferase YP_535703.1 826972 D 364254 CDS YP_535704.1 90961788 3977643 827842..828366 1 NC_007929.1 COG1418 [R] Predicted HD superfamily hydrolase; HD superfamily hydrolase 828366 3977643 LSL_0811 Lactobacillus salivarius UCC118 HD superfamily hydrolase YP_535704.1 827842 D 364254 CDS YP_535705.1 90961789 3977644 828491..828838 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 828838 3977644 LSL_0812 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_535705.1 828491 D 364254 CDS YP_535706.1 90961790 3977645 829184..830230 1 NC_007929.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 830230 pheS 3977645 pheS Lactobacillus salivarius UCC118 phenylalanyl-tRNA synthetase subunit alpha YP_535706.1 829184 D 364254 CDS YP_535707.1 90961791 3977372 830237..832654 1 NC_007929.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 832654 pheT 3977372 pheT Lactobacillus salivarius UCC118 phenylalanyl-tRNA synthetase subunit beta YP_535707.1 830237 D 364254 CDS YP_535708.1 90961792 3977373 832807..833946 1 NC_007929.1 COG1427 [R] Predicted periplasmic solute-binding protein; hypothetical protein 833946 3977373 LSL_0815 Lactobacillus salivarius UCC118 hypothetical protein YP_535708.1 832807 D 364254 CDS YP_535709.1 90961793 3977374 833969..834610 1 NC_007929.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 834610 udk 3977374 udk Lactobacillus salivarius UCC118 uridine kinase YP_535709.1 833969 D 364254 CDS YP_535710.1 90961794 3977375 834627..835097 1 NC_007929.1 COG0195 [K] Transcription elongation factor; transcription elongation factor 835097 greA 3977375 greA Lactobacillus salivarius UCC118 transcription elongation factor YP_535710.1 834627 D 364254 CDS YP_535711.1 90961795 3977376 complement(835231..835581) 1 NC_007929.1 hypothetical protein 835581 3977376 LSL_0818 Lactobacillus salivarius UCC118 hypothetical protein YP_535711.1 835231 R 364254 CDS YP_535712.1 90961796 3977377 complement(835605..836567) 1 NC_007929.1 COG1957 [F] Inosine-uridine nucleoside N-ribohydrolase; inosine-uridine preferring nucleoside hydrolase 836567 uRH 3977377 uRH Lactobacillus salivarius UCC118 inosine-uridine preferring nucleoside hydrolase YP_535712.1 835605 R 364254 CDS YP_535713.1 90961797 3977378 836837..837334 1 NC_007929.1 hypothetical protein 837334 3977378 LSL_0820 Lactobacillus salivarius UCC118 hypothetical protein YP_535713.1 836837 D 364254 CDS YP_535714.1 90961798 3977380 838241..838972 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 838972 3977380 LSL_0821 Lactobacillus salivarius UCC118 hypothetical protein YP_535714.1 838241 D 364254 CDS YP_535715.1 90961799 3977381 839012..841231 1 NC_007929.1 COG0317 [TK] Guanosine polyphosphate pyrophosphohydrolases/synthetases; GTP pyrophosphokinase 841231 relA 3977381 relA Lactobacillus salivarius UCC118 GTP pyrophosphokinase YP_535715.1 839012 D 364254 CDS YP_535716.1 90961800 3977382 841246..841692 1 NC_007929.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 841692 dtd 3977382 dtd Lactobacillus salivarius UCC118 D-tyrosyl-tRNA(Tyr) deacylase YP_535716.1 841246 D 364254 CDS YP_535717.1 90961801 3977383 841697..842311 1 NC_007929.1 COG0546 [R] Predicted phosphatases; phosphoglycolate phosphatase 842311 3977383 LSL_0824 Lactobacillus salivarius UCC118 phosphoglycolate phosphatase YP_535717.1 841697 D 364254 CDS YP_535718.1 90961802 3977384 842378..842824 1 NC_007929.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 842824 lspA 3977384 lspA Lactobacillus salivarius UCC118 lipoprotein signal peptidase YP_535718.1 842378 D 364254 CDS YP_535719.1 90961803 3977385 842817..843713 1 NC_007929.1 COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 843713 rluD 3977385 rluD Lactobacillus salivarius UCC118 ribosomal large subunit pseudouridine synthase D YP_535719.1 842817 D 364254 CDS YP_535720.1 90961804 3977386 843921..844457 1 NC_007929.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 844457 pyrR 3977386 pyrR Lactobacillus salivarius UCC118 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_535720.1 843921 D 364254 CDS YP_535721.1 90961805 3977387 844484..845791 1 NC_007929.1 COG2233 [F] Xanthine/uracil permeases; Uracil permease 845791 uraA 3977387 uraA Lactobacillus salivarius UCC118 Uracil permease YP_535721.1 844484 D 364254 CDS YP_535722.1 90961806 3977388 845853..846953 1 NC_007929.1 COG0505 [EF] Carbamoylphosphate synthase small subunit; carbamoylphosphate synthase small subunit 846953 carA 3977388 carA Lactobacillus salivarius UCC118 carbamoylphosphate synthase small subunit YP_535722.1 845853 D 364254 CDS YP_535723.1 90961807 3977760 848859..849572 1 NC_007929.1 COG0284 [F] Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 849572 pyrF 3977760 pyrF Lactobacillus salivarius UCC118 orotidine 5'-phosphate decarboxylase YP_535723.1 848859 D 364254 CDS YP_535724.1 90961808 3977761 849572..850192 1 NC_007929.1 COG0461 [F] Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 850192 pyrE 3977761 pyrE Lactobacillus salivarius UCC118 orotate phosphoribosyltransferase YP_535724.1 849572 D 364254 CDS YP_535725.1 90961809 3977762 850307..851263 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 851263 3977762 LSL_0832 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_535725.1 850307 D 364254 CDS YP_535726.1 90961810 3977763 851289..852209 1 NC_007929.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 852209 ppa 3977763 ppa Lactobacillus salivarius UCC118 manganese-dependent inorganic pyrophosphatase YP_535726.1 851289 D 364254 CDS YP_535727.1 90961811 3977764 852396..853148 1 NC_007929.1 COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 853148 3977764 LSL_0834 Lactobacillus salivarius UCC118 DeoR family transcriptional regulator YP_535727.1 852396 D 364254 CDS YP_535728.1 90961812 3977765 853208..854371 1 NC_007929.1 catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; aromatic amino acid aminotransferase 854371 araT 3977765 araT Lactobacillus salivarius UCC118 aromatic amino acid aminotransferase YP_535728.1 853208 D 364254 CDS YP_535729.1 90961813 3977766 854441..855211 1 NC_007929.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 855211 murI 3977766 murI Lactobacillus salivarius UCC118 glutamate racemase YP_535729.1 854441 D 364254 CDS YP_535730.1 90961814 3977767 855420..856106 1 NC_007929.1 hypothetical protein 856106 3977767 LSL_0837 Lactobacillus salivarius UCC118 hypothetical protein YP_535730.1 855420 D 364254 CDS YP_535731.1 90961815 3977768 856226..856570 1 NC_007929.1 GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 856570 divIVA 3977768 divIVA Lactobacillus salivarius UCC118 cell division protein GpsB YP_535731.1 856226 D 364254 CDS YP_535732.1 90961816 3977769 857052..858182 1 NC_007929.1 COG0116 [L] Predicted N6-adenine-specific DNA methylase; hypothetical protein 858182 3977769 LSL_0839 Lactobacillus salivarius UCC118 hypothetical protein YP_535732.1 857052 D 364254 CDS YP_535733.1 90961817 3977770 complement(858179..858565) 1 NC_007929.1 ribonuclease HI / cell wall enzyme EBSB 858565 3977770 LSL_0840 Lactobacillus salivarius UCC118 ribonuclease HI / cell wall enzyme EBSB YP_535733.1 858179 R 364254 CDS YP_535734.1 90961818 3977771 858592..858966 1 NC_007929.1 hypothetical protein 858966 3977771 LSL_0841 Lactobacillus salivarius UCC118 hypothetical protein YP_535734.1 858592 D 364254 CDS YP_535735.1 90961819 3977772 859086..860744 1 NC_007929.1 COG2759 [F] Formyltetrahydrofolate synthetase; formate--tetrahydrofolate ligase 860744 fhs 3977772 fhs Lactobacillus salivarius UCC118 formate--tetrahydrofolate ligase YP_535735.1 859086 D 364254 CDS YP_535736.1 90961820 3977773 860763..861389 1 NC_007929.1 hypothetical protein 861389 3977773 LSL_0843 Lactobacillus salivarius UCC118 hypothetical protein YP_535736.1 860763 D 364254 CDS YP_535737.1 90961821 3977774 861496..862785 1 NC_007929.1 COG1196 [D] Chromosome segregation ATPases; hypothetical protein 862785 3977774 LSL_0844 Lactobacillus salivarius UCC118 hypothetical protein YP_535737.1 861496 D 364254 CDS YP_535738.1 90961822 3977775 863061..863291 1 NC_007929.1 hypothetical protein 863291 3977775 LSL_0845 Lactobacillus salivarius UCC118 hypothetical protein YP_535738.1 863061 D 364254 CDS YP_535739.1 90961823 3977777 864752..865450 1 NC_007929.1 COG2384 [R] Predicted SAM-dependent methyltransferase; hypothetical protein 865450 3977777 LSL_0846 Lactobacillus salivarius UCC118 hypothetical protein YP_535739.1 864752 D 364254 CDS YP_535740.1 90961824 3977740 865443..866255 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; NIF3-related protein 866255 3977740 LSL_0847 Lactobacillus salivarius UCC118 NIF3-related protein YP_535740.1 865443 D 364254 CDS YP_535741.1 90961825 3977741 866274..867515 1 NC_007929.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 867515 pepD 3977741 pepD Lactobacillus salivarius UCC118 peptidase T YP_535741.1 866274 D 364254 CDS YP_535742.1 90961826 3977742 867571..868227 1 NC_007929.1 COG4912 [L] Predicted DNA alkylation repair enzyme; hypothetical protein 868227 3977742 LSL_0849 Lactobacillus salivarius UCC118 hypothetical protein YP_535742.1 867571 D 364254 CDS YP_535743.1 90961827 3977743 868328..869260 1 NC_007929.1 COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 869260 3977743 LSL_0850 Lactobacillus salivarius UCC118 drug/metabolite exporter family protein YP_535743.1 868328 D 364254 CDS YP_535744.1 90961828 3977744 869342..870598 1 NC_007929.1 COG0457 [R] FOG: TPR repeat; hypothetical protein 870598 3977744 LSL_0851 Lactobacillus salivarius UCC118 hypothetical protein YP_535744.1 869342 D 364254 CDS YP_535745.1 90961829 3977745 870981..872276 1 NC_007929.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 872276 hisS 3977745 hisS Lactobacillus salivarius UCC118 histidyl-tRNA synthetase YP_535745.1 870981 D 364254 CDS YP_535746.1 90961830 3977746 872279..874051 1 NC_007929.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 874051 aspS 3977746 aspS Lactobacillus salivarius UCC118 aspartyl-tRNA synthetase YP_535746.1 872279 D 364254 CDS YP_535747.1 90961831 3977747 874183..875100 1 NC_007929.1 COG0598 [P] Mg2+ and Co2+ transporters; magnesium/cobalt transporter CorA 875100 corA 3977747 corA Lactobacillus salivarius UCC118 magnesium/cobalt transporter CorA YP_535747.1 874183 D 364254 CDS YP_535748.1 90961832 3977748 875460..876827 1 NC_007929.1 COG1757 [C] Na+/H+ antiporter; Na(+)/H(+) antiporter 876827 nhaC 3977748 nhaC Lactobacillus salivarius UCC118 Na(+)/H(+) antiporter YP_535748.1 875460 D 364254 CDS YP_535749.1 90961833 3977749 876954..877931 1 NC_007929.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 877931 dapF 3977749 dapF Lactobacillus salivarius UCC118 diaminopimelate epimerase YP_535749.1 876954 D 364254 CDS YP_535750.1 90961834 3977750 877943..878479 1 NC_007929.1 COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; ADP-ribose pyrophosphatase 878479 nudF 3977750 nudF Lactobacillus salivarius UCC118 ADP-ribose pyrophosphatase YP_535750.1 877943 D 364254 CDS YP_535751.1 90961835 3977751 878489..878710 1 NC_007929.1 hypothetical protein 878710 3977751 LSL_0858 Lactobacillus salivarius UCC118 hypothetical protein YP_535751.1 878489 D 364254 CDS YP_535752.1 90961836 3977752 878731..879417 1 NC_007929.1 COG0775 [F] Nucleoside phosphorylase; 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase 879417 pfs 3977752 pfs Lactobacillus salivarius UCC118 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase YP_535752.1 878731 D 364254 CDS YP_535753.1 90961837 3977753 879433..880575 1 NC_007929.1 COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase / selenocysteine lyase 880575 nifS 3977753 nifS Lactobacillus salivarius UCC118 cysteine desulfurase / selenocysteine lyase YP_535753.1 879433 D 364254 CDS YP_535754.1 90961838 3977754 880588..880929 1 NC_007929.1 hypothetical protein 880929 3977754 LSL_0861 Lactobacillus salivarius UCC118 hypothetical protein YP_535754.1 880588 D 364254 CDS YP_535755.1 90961839 3977755 881042..882169 1 NC_007929.1 COG0482 [J] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 882169 trmU 3977755 trmU Lactobacillus salivarius UCC118 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_535755.1 881042 D 364254 CDS YP_535756.1 90961840 3977756 882294..884885 1 NC_007929.1 COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; chaperone 884885 clpB 3977756 clpB Lactobacillus salivarius UCC118 chaperone YP_535756.1 882294 D 364254 CDS YP_535757.1 90961841 3977757 complement(884935..885120) 1 NC_007929.1 hypothetical protein 885120 3977757 LSL_0864 Lactobacillus salivarius UCC118 hypothetical protein YP_535757.1 884935 R 364254 CDS YP_535758.1 90961842 3977758 885267..888560 1 NC_007929.1 COG0587 [L] DNA polymerase III, alpha subunit; DNA polymerase III alpha subunit 888560 dnaE 3977758 dnaE Lactobacillus salivarius UCC118 DNA polymerase III alpha subunit YP_535758.1 885267 D 364254 CDS YP_535759.1 90961843 3977759 888727..889689 1 NC_007929.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 889689 pfkA 3977759 pfkA Lactobacillus salivarius UCC118 6-phosphofructokinase YP_535759.1 888727 D 364254 CDS YP_535760.1 90961844 3977892 889779..891539 1 NC_007929.1 COG0469 [G] Pyruvate kinase; pyruvate kinase 891539 pykF 3977892 pykF Lactobacillus salivarius UCC118 pyruvate kinase YP_535760.1 889779 D 364254 CDS YP_535761.1 90961845 3977893 891718..892002 1 NC_007929.1 hypothetical protein 892002 3977893 LSL_0868 Lactobacillus salivarius UCC118 hypothetical protein YP_535761.1 891718 D 364254 CDS YP_535762.1 90961846 3977894 complement(892094..892465) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 892465 3977894 LSL_0869 Lactobacillus salivarius UCC118 hypothetical protein YP_535762.1 892094 R 364254 CDS YP_535763.1 90961847 3977895 complement(892572..893192) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 893192 3977895 LSL_0870 Lactobacillus salivarius UCC118 hypothetical protein YP_535763.1 892572 R 364254 CDS YP_535764.1 90961848 3977896 893358..895379 1 NC_007929.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 895379 gyrB 3977896 gyrB Lactobacillus salivarius UCC118 DNA topoisomerase IV subunit B YP_535764.1 893358 D 364254 CDS YP_535765.1 90961849 3977897 895404..897830 1 NC_007929.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 897830 gyrA 3977897 gyrA Lactobacillus salivarius UCC118 DNA topoisomerase IV subunit A YP_535765.1 895404 D 364254 CDS YP_535766.1 90961850 3977898 complement(897877..899565) 1 NC_007929.1 COG1293 [K] Predicted RNA-binding protein homologous to eukaryotic snRNP; fibronectin-binding protein / fibrinogen-binding protein 899565 3977898 LSL_0873 Lactobacillus salivarius UCC118 fibronectin-binding protein / fibrinogen-binding protein YP_535766.1 897877 R 364254 CDS YP_535767.1 90961851 3977899 899752..900183 1 NC_007929.1 COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 900183 3977899 LSL_0874 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_535767.1 899752 D 364254 CDS YP_535768.1 90961852 3977900 900222..901154 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 901154 3977900 LSL_0875 Lactobacillus salivarius UCC118 DegV family protein YP_535768.1 900222 D 364254 CDS YP_535769.1 90961853 3977901 901296..901883 1 NC_007929.1 COG0681 [U] signal peptidase I; signal peptidase I 901883 lepB 3977901 lepB Lactobacillus salivarius UCC118 signal peptidase I YP_535769.1 901296 D 364254 CDS YP_535770.1 90961854 3977902 complement(902109..902558) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 902558 3977902 LSL_0877 Lactobacillus salivarius UCC118 hypothetical protein YP_535770.1 902109 R 364254 CDS YP_535771.1 90961855 3977903 complement(902617..903870) 1 NC_007929.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 903870 glyA 3977903 glyA Lactobacillus salivarius UCC118 serine hydroxymethyltransferase YP_535771.1 902617 R 364254 CDS YP_535772.1 90961856 3977904 903993..904832 1 NC_007929.1 COG1408 [R] Predicted phosphohydrolases; phosphoesterase 904832 3977904 LSL_0879 Lactobacillus salivarius UCC118 phosphoesterase YP_535772.1 903993 D 364254 CDS YP_535773.1 90961857 3977905 904974..905873 1 NC_007929.1 COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 905873 3977905 LSL_0880 Lactobacillus salivarius UCC118 drug/metabolite exporter family protein YP_535773.1 904974 D 364254 CDS YP_535774.1 90961858 3977906 complement(905913..907121) 1 NC_007929.1 COG1668 [CP] ABC-type Na+ efflux pump, permease component; ABC transporter, permease 907121 3977906 LSL_0881 Lactobacillus salivarius UCC118 ABC transporter, permease YP_535774.1 905913 R 364254 CDS YP_535775.1 90961859 3977907 complement(907105..908001) 1 NC_007929.1 COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein 908001 3977907 LSL_0882 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_535775.1 907105 R 364254 CDS YP_535776.1 90961860 3977908 complement(908093..908698) 1 NC_007929.1 hypothetical protein 908698 3977908 LSL_0883 Lactobacillus salivarius UCC118 hypothetical protein YP_535776.1 908093 R 364254 CDS YP_535777.1 90961861 3977909 908870..909010 1 NC_007929.1 hypothetical protein 909010 3977909 LSL_0884 Lactobacillus salivarius UCC118 hypothetical protein YP_535777.1 908870 D 364254 CDS YP_535778.1 90961862 3977910 complement(909069..909344) 1 NC_007929.1 COG0776 [L] Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 909344 3977910 LSL_0885 Lactobacillus salivarius UCC118 DNA-binding protein HU YP_535778.1 909069 R 364254 CDS YP_535779.1 90961863 3977778 complement(909465..910775) 1 NC_007929.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 910775 engA 3977778 engA Lactobacillus salivarius UCC118 GTP-binding protein EngA YP_535779.1 909465 R 364254 CDS YP_535780.1 90961864 3977779 complement(910860..912059) 1 NC_007929.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 912059 rpsA 3977779 rpsA Lactobacillus salivarius UCC118 30S ribosomal protein S1 YP_535780.1 910860 R 364254 CDS YP_535781.1 90961865 3977780 complement(912312..912725) 1 NC_007929.1 COG0394 [T] Protein-tyrosine-phosphatase; arsenate reductase 912725 arsC 3977780 arsC Lactobacillus salivarius UCC118 arsenate reductase YP_535781.1 912312 R 364254 CDS YP_535782.1 90961866 3977781 complement(912807..914081) 1 NC_007929.1 COG3966 [M] Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein); protein dltD precursor 914081 dltD 3977781 dltD Lactobacillus salivarius UCC118 protein dltD precursor YP_535782.1 912807 R 364254 CDS YP_535783.1 90961867 3977782 complement(914084..914311) 1 NC_007929.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 914311 3977782 LSL_0890 Lactobacillus salivarius UCC118 D-alanine--poly(phosphoribitol) ligase subunit 2 YP_535783.1 914084 R 364254 CDS YP_535784.1 90961868 3977783 complement(914332..915534) 1 NC_007929.1 COG1696 [M] Predicted membrane protein involved in D-alanine export; protein dltB 915534 dltB 3977783 dltB Lactobacillus salivarius UCC118 protein dltB YP_535784.1 914332 R 364254 CDS YP_535785.1 90961869 3977784 complement(915534..917060) 1 NC_007929.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 917060 3977784 LSL_0892 Lactobacillus salivarius UCC118 D-alanine--poly(phosphoribitol) ligase subunit 1 YP_535785.1 915534 R 364254 CDS YP_535786.1 90961870 3977785 complement(917076..917234) 1 NC_007929.1 hypothetical protein 917234 3977785 LSL_0893 Lactobacillus salivarius UCC118 hypothetical protein YP_535786.1 917076 R 364254 CDS YP_535787.1 90961871 3977786 complement(917395..918177) 1 NC_007929.1 COG0353 [L] Recombinational DNA repair protein (RecF pathway); DNA repair protein 918177 recO 3977786 recO Lactobacillus salivarius UCC118 DNA repair protein YP_535787.1 917395 R 364254 CDS YP_535788.1 90961872 3977787 complement(918244..919146) 1 NC_007929.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 919146 era 3977787 era Lactobacillus salivarius UCC118 GTP-binding protein Era YP_535788.1 918244 R 364254 CDS YP_535789.1 90961873 3977788 complement(919162..919578) 1 NC_007929.1 COG0818 [M] Diacylglycerol kinase; diacylglycerol kinase 919578 dgkA 3977788 dgkA Lactobacillus salivarius UCC118 diacylglycerol kinase YP_535789.1 919162 R 364254 CDS YP_535790.1 90961874 3977789 complement(919556..920035) 1 NC_007929.1 COG0319 [R] Predicted metal-dependent hydrolase; hypothetical protein 920035 3977789 LSL_0897 Lactobacillus salivarius UCC118 hypothetical protein YP_535790.1 919556 R 364254 CDS YP_535791.1 90961875 3977790 complement(920051..921016) 1 NC_007929.1 COG1702 [T] Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH protein 921016 phoH 3977790 phoH Lactobacillus salivarius UCC118 PhoH protein YP_535791.1 920051 R 364254 CDS YP_535792.1 90961876 3977791 921213..922061 1 NC_007929.1 COG0860 [M] N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 922061 amiC 3977791 amiC Lactobacillus salivarius UCC118 N-acetylmuramoyl-L-alanine amidase YP_535792.1 921213 D 364254 CDS YP_535793.1 90961877 3977792 complement(922113..922787) 1 NC_007929.1 COG0283 [F] Cytidylate kinase; cytidylate kinase 922787 cmk 3977792 cmk Lactobacillus salivarius UCC118 cytidylate kinase YP_535793.1 922113 R 364254 CDS YP_535794.1 90961878 3977793 complement(922819..923370) 1 NC_007929.1 hypothetical protein 923370 3977793 LSL_0901 Lactobacillus salivarius UCC118 hypothetical protein YP_535794.1 922819 R 364254 CDS YP_535795.1 90961879 3977794 complement(923432..924877) 1 NC_007929.1 COG0514 [L] Superfamily II DNA helicase; ATP-dependent DNA helicase 924877 recQ 3977794 recQ Lactobacillus salivarius UCC118 ATP-dependent DNA helicase YP_535795.1 923432 R 364254 CDS YP_535796.1 90961880 3977795 complement(924864..925904) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 925904 3977795 LSL_0903 Lactobacillus salivarius UCC118 hypothetical protein YP_535796.1 924864 R 364254 CDS YP_535797.1 90961881 3977796 926084..927649 1 NC_007929.1 COG1914 [P] Mn2+ and Fe2+ transporters of the NRAMP family; manganese transport protein 927649 mntH 3977796 mntH Lactobacillus salivarius UCC118 manganese transport protein YP_535797.1 926084 D 364254 CDS YP_535798.1 90961882 3977797 complement(927713..928081) 1 NC_007929.1 COG0720 [H] 6-pyruvoyl-tetrahydropterin synthase; 6-pyruvoyl tetrahydropterin synthase 928081 3977797 LSL_0905 Lactobacillus salivarius UCC118 6-pyruvoyl tetrahydropterin synthase YP_535798.1 927713 R 364254 CDS YP_535799.1 90961883 3977241 complement(929400..929996) 1 NC_007929.1 hypothetical protein 929996 3977241 LSL_0906 Lactobacillus salivarius UCC118 hypothetical protein YP_535799.1 929400 R 364254 CDS YP_535800.1 90961884 3977242 complement(929989..931533) 1 NC_007929.1 hypothetical protein 931533 3977242 LSL_0907 Lactobacillus salivarius UCC118 hypothetical protein YP_535800.1 929989 R 364254 CDS YP_535801.1 90961885 3977243 complement(931600..932397) 1 NC_007929.1 hypothetical protein 932397 3977243 LSL_0908 Lactobacillus salivarius UCC118 hypothetical protein YP_535801.1 931600 R 364254 CDS YP_535802.1 90961886 3977244 complement(932755..933873) 1 NC_007929.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 933873 rpoD 3977244 rpoD Lactobacillus salivarius UCC118 RNA polymerase sigma factor RpoD YP_535802.1 932755 R 364254 CDS YP_535803.1 90961887 3977245 complement(933886..935739) 1 NC_007929.1 COG0358 [L] DNA primase (bacterial type); DNA primase 935739 dnaG 3977245 dnaG Lactobacillus salivarius UCC118 DNA primase YP_535803.1 933886 R 364254 CDS YP_535804.1 90961888 3977246 complement(935920..938001) 1 NC_007929.1 COG0751 [J] Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 938001 glyS 3977246 glyS Lactobacillus salivarius UCC118 glycyl-tRNA synthetase subunit beta YP_535804.1 935920 R 364254 CDS YP_535805.1 90961889 3977247 complement(938001..938918) 1 NC_007929.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 938918 glyQ 3977247 glyQ Lactobacillus salivarius UCC118 glycyl-tRNA synthetase subunit alpha YP_535805.1 938001 R 364254 CDS YP_535806.1 90961890 3977248 complement(939353..940240) 1 NC_007929.1 COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; acyltransferases and hydrolases with the alpha/beta hydrolase fold 940240 3977248 LSL_0913 Lactobacillus salivarius UCC118 acyltransferases and hydrolases with the alpha/beta hydrolase fold YP_535806.1 939353 R 364254 CDS YP_535807.1 90961891 3977249 complement(940241..941590) 1 NC_007929.1 COG1455 [G] Phosphotransferase system cellobiose-specific component IIC; cellobiose PTS, EIIC 941590 celB 3977249 celB Lactobacillus salivarius UCC118 cellobiose PTS, EIIC YP_535807.1 940241 R 364254 CDS YP_535808.1 90961892 3977250 941848..943053 1 NC_007929.1 COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit 943053 hsdS 3977250 hsdS Lactobacillus salivarius UCC118 type I restriction-modification system specificity subunit YP_535808.1 941848 D 364254 CDS YP_535809.1 90961893 3977251 943300..944418 1 NC_007929.1 COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit 944418 hsdS 3977251 hsdS Lactobacillus salivarius UCC118 type I restriction-modification system specificity subunit YP_535809.1 943300 D 364254 CDS YP_535810.1 90961894 3977252 complement(944461..945378) 1 NC_007929.1 COG0582 [L] Integrase; DNA integration/recombination/inversion protein 945378 xerC 3977252 xerC Lactobacillus salivarius UCC118 DNA integration/recombination/inversion protein YP_535810.1 944461 R 364254 CDS YP_535811.1 90961895 3977253 complement(945432..946586) 1 NC_007929.1 COG0732 [V] Restriction endonuclease S subunits; type I restriction-modification system specificity subunit 946586 hsdS 3977253 hsdS Lactobacillus salivarius UCC118 type I restriction-modification system specificity subunit YP_535811.1 945432 R 364254 CDS YP_535812.1 90961896 3977254 complement(946586..948175) 1 NC_007929.1 COG0286 [V] type I restriction-modification system methyltransferase subunit; type I restriction-modification system methylation subunit 948175 hsdM 3977254 hsdM Lactobacillus salivarius UCC118 type I restriction-modification system methylation subunit YP_535812.1 946586 R 364254 CDS YP_535813.1 90961897 3977255 complement(948193..951207) 1 NC_007929.1 COG0610 [V] type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction-modification system restriction subunit 951207 hsdR 3977255 hsdR Lactobacillus salivarius UCC118 type I restriction-modification system restriction subunit YP_535813.1 948193 R 364254 CDS YP_535814.1 90961898 3977256 complement(951368..951577) 1 NC_007929.1 hypothetical protein 951577 3977256 LSL_0921 Lactobacillus salivarius UCC118 hypothetical protein YP_535814.1 951368 R 364254 CDS YP_535815.1 90961899 3977257 complement(951623..952237) 1 NC_007929.1 COG1051 [F] ADP-ribose pyrophosphatase; phosphohydrolase, MutT/nudix family protein 952237 3977257 LSL_0922 Lactobacillus salivarius UCC118 phosphohydrolase, MutT/nudix family protein YP_535815.1 951623 R 364254 CDS YP_535816.1 90961900 3977476 complement(952414..953091) 1 NC_007929.1 COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 953091 pgpB 3977476 pgpB Lactobacillus salivarius UCC118 phosphatidylglycerophosphatase B YP_535816.1 952414 R 364254 CDS YP_535817.1 90961901 3977477 complement(953094..953726) 1 NC_007929.1 COG0110 [R] acetyltransferase (isoleucine patch superfamily); maltose O-acetyltransferase 953726 3977477 LSL_0924 Lactobacillus salivarius UCC118 maltose O-acetyltransferase YP_535817.1 953094 R 364254 CDS YP_535818.1 90961902 3977478 complement(953933..954160) 1 NC_007929.1 hypothetical protein 954160 3977478 LSL_0925 Lactobacillus salivarius UCC118 hypothetical protein YP_535818.1 953933 R 364254 CDS YP_535819.1 90961903 3977479 954140..954898 1 NC_007929.1 zwittermicin A resistance protein zmaR 954898 3977479 LSL_0926 Lactobacillus salivarius UCC118 zwittermicin A resistance protein zmaR YP_535819.1 954140 D 364254 CDS YP_535820.1 90961904 3977480 955042..955167 1 NC_007929.1 hypothetical protein 955167 3977480 LSL_0927 Lactobacillus salivarius UCC118 hypothetical protein YP_535820.1 955042 D 364254 CDS YP_535821.1 90961905 3977481 complement(955313..956407) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 956407 3977481 LSL_0928 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535821.1 955313 R 364254 CDS YP_535822.1 90961906 3977483 complement(956686..958422) 1 NC_007929.1 COG1001 [F] Adenine deaminase; adenine deaminase 958422 adeC 3977483 adeC Lactobacillus salivarius UCC118 adenine deaminase YP_535822.1 956686 R 364254 CDS YP_535823.1 90961907 3977484 complement(958535..959086) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 959086 3977484 LSL_0930 Lactobacillus salivarius UCC118 hypothetical protein YP_535823.1 958535 R 364254 CDS YP_535824.1 90961908 3977485 959562..960947 1 NC_007929.1 COG1757 [C] Na+/H+ antiporter; Na(+)/H(+) antiporter 960947 nhaC 3977485 nhaC Lactobacillus salivarius UCC118 Na(+)/H(+) antiporter YP_535824.1 959562 D 364254 CDS YP_535825.1 90961909 3977486 961115..961756 1 NC_007929.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 961756 recU 3977486 recU Lactobacillus salivarius UCC118 Holliday junction-specific endonuclease YP_535825.1 961115 D 364254 CDS YP_535826.1 90961910 3977487 961786..964104 1 NC_007929.1 COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); multimodular transpeptidase-transglycosylase PBP 1A 964104 mrcA 3977487 mrcA Lactobacillus salivarius UCC118 multimodular transpeptidase-transglycosylase PBP 1A YP_535826.1 961786 D 364254 CDS YP_535827.1 90961911 3977488 complement(964160..965053) 1 NC_007929.1 COG4974 [L] Site-specific recombinase XerD; integrase/recombinase XerD/RipX family 965053 3977488 LSL_0934 Lactobacillus salivarius UCC118 integrase/recombinase XerD/RipX family YP_535827.1 964160 R 364254 CDS YP_535828.1 90961912 3977489 complement(965060..965926) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 965926 3977489 LSL_0935 Lactobacillus salivarius UCC118 hypothetical protein YP_535828.1 965060 R 364254 CDS YP_535829.1 90961913 3977490 complement(965941..966402) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 966402 3977490 LSL_0936 Lactobacillus salivarius UCC118 hypothetical protein YP_535829.1 965941 R 364254 CDS YP_535830.1 90961914 3977491 complement(966529..967125) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 967125 3977491 LSL_0937 Lactobacillus salivarius UCC118 hypothetical protein YP_535830.1 966529 R 364254 CDS YP_535831.1 90961915 3977492 complement(967428..968156) 1 NC_007929.1 COG1187 [J] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; ribosomal large subunit pseudouridine synthase B 968156 rluB 3977492 rluB Lactobacillus salivarius UCC118 ribosomal large subunit pseudouridine synthase B YP_535831.1 967428 R 364254 CDS YP_535832.1 90961916 3977493 complement(968156..968746) 1 NC_007929.1 COG1386 [K] Predicted transcriptional regulator containing the HTH domain; segregation and condensation protein ScpB 968746 3977493 LSL_0939 Lactobacillus salivarius UCC118 segregation and condensation protein ScpB YP_535832.1 968156 R 364254 CDS YP_535833.1 90961917 3977494 complement(968736..969521) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; segregation and condensation protein ScpA 969521 3977494 LSL_0940 Lactobacillus salivarius UCC118 segregation and condensation protein ScpA YP_535833.1 968736 R 364254 CDS YP_535834.1 90961918 3977837 complement(969505..969870) 1 NC_007929.1 RibT protein 969870 3977837 LSL_0941 Lactobacillus salivarius UCC118 RibT protein YP_535834.1 969505 R 364254 CDS YP_535835.1 90961919 3977838 complement(970039..970683) 1 NC_007929.1 hypothetical protein 970683 3977838 LSL_0942 Lactobacillus salivarius UCC118 hypothetical protein YP_535835.1 970039 R 364254 CDS YP_535836.1 90961920 3977839 complement(970720..971715) 1 NC_007929.1 hypothetical protein 971715 3977839 LSL_0943 Lactobacillus salivarius UCC118 hypothetical protein YP_535836.1 970720 R 364254 CDS YP_535837.1 90961921 3977840 complement(971877..972011) 1 NC_007929.1 hypothetical protein 972011 3977840 LSL_0944 Lactobacillus salivarius UCC118 hypothetical protein YP_535837.1 971877 R 364254 CDS YP_535838.1 90961922 3977841 complement(972086..972352) 1 NC_007929.1 hypothetical protein 972352 3977841 LSL_0945 Lactobacillus salivarius UCC118 hypothetical protein YP_535838.1 972086 R 364254 CDS YP_535839.1 90961923 3977842 complement(972459..973862) 1 NC_007929.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 973862 hslU 3977842 hslU Lactobacillus salivarius UCC118 ATP-dependent protease ATP-binding subunit HslU YP_535839.1 972459 R 364254 CDS YP_535840.1 90961924 3977843 complement(973881..974408) 1 NC_007929.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 974408 3977843 LSL_0947 Lactobacillus salivarius UCC118 ATP-dependent protease peptidase subunit YP_535840.1 973881 R 364254 CDS YP_535841.1 90961925 3977844 complement(974435..975331) 1 NC_007929.1 COG4974 [L] Site-specific recombinase XerD; XerC/CodV family integrase/recombinase 975331 3977844 LSL_0948 Lactobacillus salivarius UCC118 XerC/CodV family integrase/recombinase YP_535841.1 974435 R 364254 CDS YP_535842.1 90961926 3977845 complement(975523..976698) 1 NC_007929.1 COG2230 [M] Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane-fatty-acyl-phospholipid synthase 976698 cfa 3977845 cfa Lactobacillus salivarius UCC118 cyclopropane-fatty-acyl-phospholipid synthase YP_535842.1 975523 R 364254 CDS YP_535843.1 90961927 3977846 976972..977934 1 NC_007929.1 COG1597 [IR] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase; transcription regulator 977934 3977846 LSL_0950 Lactobacillus salivarius UCC118 transcription regulator YP_535843.1 976972 D 364254 CDS YP_535844.1 90961928 3977847 complement(978049..978951) 1 NC_007929.1 hypothetical protein 978951 3977847 LSL_0951 Lactobacillus salivarius UCC118 hypothetical protein YP_535844.1 978049 R 364254 CDS YP_535845.1 90961929 3977848 complement(978976..979209) 1 NC_007929.1 hypothetical protein 979209 3977848 LSL_0952 Lactobacillus salivarius UCC118 hypothetical protein YP_535845.1 978976 R 364254 CDS YP_535846.1 90961930 3977849 979569..980153 1 NC_007929.1 hypothetical protein 980153 3977849 LSL_0953 Lactobacillus salivarius UCC118 hypothetical protein YP_535846.1 979569 D 364254 CDS YP_535847.1 90961931 3977850 complement(980256..980537) 1 NC_007929.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 980537 rpmA 3977850 rpmA Lactobacillus salivarius UCC118 50S ribosomal protein L27 YP_535847.1 980256 R 364254 CDS YP_535848.1 90961932 3977851 complement(980559..980885) 1 NC_007929.1 COG2868 [J] Predicted ribosomal protein; ribosomal protein 980885 3977851 LSL_0955 Lactobacillus salivarius UCC118 ribosomal protein YP_535848.1 980559 R 364254 CDS YP_535849.1 90961933 3977852 complement(980910..981218) 1 NC_007929.1 COG0261 [J] Ribosomal protein L21; 50S ribosomal protein L21P 981218 rplU 3977852 rplU Lactobacillus salivarius UCC118 50S ribosomal protein L21P YP_535849.1 980910 R 364254 CDS YP_535850.1 90961934 3977853 complement(981374..981631) 1 NC_007929.1 hypothetical protein 981631 3977853 LSL_0957 Lactobacillus salivarius UCC118 hypothetical protein YP_535850.1 981374 R 364254 CDS YP_535851.1 90961935 3977854 complement(981628..981780) 1 NC_007929.1 hypothetical protein 981780 3977854 LSL_0958 Lactobacillus salivarius UCC118 hypothetical protein YP_535851.1 981628 R 364254 CDS YP_535852.1 90961936 3977855 complement(981762..982169) 1 NC_007929.1 hypothetical protein 982169 3977855 LSL_0959 Lactobacillus salivarius UCC118 hypothetical protein YP_535852.1 981762 R 364254 CDS YP_535853.1 90961937 3976646 complement(982289..982522) 1 NC_007929.1 hypothetical protein 982522 3976646 LSL_0960 Lactobacillus salivarius UCC118 hypothetical protein YP_535853.1 982289 R 364254 CDS YP_535854.1 90961938 3976647 complement(982539..982739) 1 NC_007929.1 hypothetical protein 982739 3976647 LSL_0961 Lactobacillus salivarius UCC118 hypothetical protein YP_535854.1 982539 R 364254 CDS YP_535855.1 90961939 3976648 complement(982830..983351) 1 NC_007929.1 hypothetical protein 983351 3976648 LSL_0962 Lactobacillus salivarius UCC118 hypothetical protein YP_535855.1 982830 R 364254 CDS YP_535856.1 90961940 3976649 983671..984408 1 NC_007929.1 hypothetical protein 984408 3976649 LSL_0963 Lactobacillus salivarius UCC118 hypothetical protein YP_535856.1 983671 D 364254 CDS YP_535857.1 90961941 3976650 984492..985058 1 NC_007929.1 COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; phosphohydrolase, MutT/nudix family protein 985058 3976650 LSL_0964 Lactobacillus salivarius UCC118 phosphohydrolase, MutT/nudix family protein YP_535857.1 984492 D 364254 CDS YP_535858.1 90961942 3976651 complement(985055..986014) 1 NC_007929.1 COG0451 [MG] Nucleoside-diphosphate-sugar epimerases; UDP-glucose 4-epimerase 986014 gAlE 3976651 gAlE Lactobacillus salivarius UCC118 UDP-glucose 4-epimerase YP_535858.1 985055 R 364254 CDS YP_535859.1 90961943 3976652 complement(986058..986570) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 986570 wecD 3976652 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535859.1 986058 R 364254 CDS YP_535860.1 90961944 3976653 complement(986895..987704) 1 NC_007929.1 hypothetical protein 987704 3976653 LSL_0967 Lactobacillus salivarius UCC118 hypothetical protein YP_535860.1 986895 R 364254 CDS YP_535861.1 90961945 3976654 complement(987802..988485) 1 NC_007929.1 COG0392 [S] Predicted integral membrane protein; hypothetical protein 988485 3976654 LSL_0968 Lactobacillus salivarius UCC118 hypothetical protein YP_535861.1 987802 R 364254 CDS YP_535862.1 90961946 3976655 988702..989271 1 NC_007929.1 hypothetical protein 989271 3976655 LSL_0969 Lactobacillus salivarius UCC118 hypothetical protein YP_535862.1 988702 D 364254 CDS YP_535863.1 90961947 3976656 complement(989341..990345) 1 NC_007929.1 COG0604 [CR] NADPH:quinone reductase and related Zn-dependent oxidoreductases; quinone oxidoreductase 990345 qor 3976656 qor Lactobacillus salivarius UCC118 quinone oxidoreductase YP_535863.1 989341 R 364254 CDS YP_535864.1 90961948 3976657 complement(990570..990878) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 990878 3976657 LSL_0971 Lactobacillus salivarius UCC118 hypothetical protein YP_535864.1 990570 R 364254 CDS YP_535865.1 90961949 3976658 complement(990859..991320) 1 NC_007929.1 COG1395 [K] Predicted transcriptional regulator; transcription regulator 991320 3976658 LSL_0972 Lactobacillus salivarius UCC118 transcription regulator YP_535865.1 990859 R 364254 CDS YP_535866.1 90961950 3976659 complement(991383..992228) 1 NC_007929.1 COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; hypothetical protein 992228 3976659 LSL_0973 Lactobacillus salivarius UCC118 hypothetical protein YP_535866.1 991383 R 364254 CDS YP_535867.1 90961951 3976660 complement(992368..992700) 1 NC_007929.1 hypothetical protein 992700 3976660 LSL_0975 Lactobacillus salivarius UCC118 hypothetical protein YP_535867.1 992368 R 364254 CDS YP_535868.1 90961952 3976661 complement(992876..994015) 1 NC_007929.1 glycosyltransferase 994015 rfaG 3976661 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535868.1 992876 R 364254 CDS YP_535869.1 90961953 3976662 complement(994108..995265) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 995265 rfaG 3976662 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535869.1 994108 R 364254 CDS YP_535870.1 90961954 3976663 complement(995277..996527) 1 NC_007929.1 COG1004 [M] Predicted UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 996527 ugd 3976663 ugd Lactobacillus salivarius UCC118 UDP-glucose 6-dehydrogenase YP_535870.1 995277 R 364254 CDS YP_535871.1 90961955 3976664 complement(996533..997612) 1 NC_007929.1 COG0451 [MG] Nucleoside-diphosphate-sugar epimerases; UDP-glucuronate 4-epimerase 997612 3976664 LSL_0980 Lactobacillus salivarius UCC118 UDP-glucuronate 4-epimerase YP_535871.1 996533 R 364254 CDS YP_535872.1 90961956 3976665 complement(997618..999150) 1 NC_007929.1 COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase; oligosaccharide translocase 999150 3976665 LSL_0981 Lactobacillus salivarius UCC118 oligosaccharide translocase YP_535872.1 997618 R 364254 CDS YP_535873.1 90961957 3977439 complement(999171..1000232) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1000232 rfaG 3977439 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535873.1 999171 R 364254 CDS YP_535874.1 90961958 3977440 complement(1000257..1001372) 1 NC_007929.1 COG3754 [M] Lipopolysaccharide biosynthesis protein; glycosyltransferase 1001372 rfaG 3977440 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535874.1 1000257 R 364254 CDS YP_535875.1 90961959 3977441 complement(1001469..1002584) 1 NC_007929.1 COG3754 [M] Lipopolysaccharide biosynthesis protein; glycosyltransferase 1002584 rfaG 3977441 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535875.1 1001469 R 364254 CDS YP_535876.1 90961960 3977442 complement(1002614..1003705) 1 NC_007929.1 hypothetical protein 1003705 3977442 LSL_0985 Lactobacillus salivarius UCC118 hypothetical protein YP_535876.1 1002614 R 364254 CDS YP_535877.1 90961961 3977443 complement(1003717..1004604) 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 1004604 rfaG 3977443 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535877.1 1003717 R 364254 CDS YP_535878.1 90961962 3977444 complement(1004617..1005483) 1 NC_007929.1 COG1216 [R] Predicted glycosyltransferases; glycosyltransferase 1005483 rfaG 3977444 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535878.1 1004617 R 364254 CDS YP_535879.1 90961963 3977445 complement(1005497..1006603) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1006603 rfaG 3977445 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535879.1 1005497 R 364254 CDS YP_535880.1 90961964 3977446 complement(1006634..1007782) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1007782 rfaG 3977446 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535880.1 1006634 R 364254 CDS YP_535881.1 90961965 3977447 complement(1007820..1008968) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1008968 rfaG 3977447 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535881.1 1007820 R 364254 CDS YP_535882.1 90961966 3977448 complement(1008981..1010078) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1010078 rfaG 3977448 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_535882.1 1008981 R 364254 CDS YP_535883.1 90961967 3977449 complement(1010092..1010682) 1 NC_007929.1 COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase 1010682 wecD 3977449 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535883.1 1010092 R 364254 CDS YP_535884.1 90961968 3977450 complement(1010679..1011326) 1 NC_007929.1 COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis; UDP-galactose phosphate transferase 1011326 3977450 LSL_0993 Lactobacillus salivarius UCC118 UDP-galactose phosphate transferase YP_535884.1 1010679 R 364254 CDS YP_535885.1 90961969 3977451 complement(1011376..1012572) 1 NC_007929.1 COG0399 [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; aminotransferase 1012572 3977451 LSL_0994 Lactobacillus salivarius UCC118 aminotransferase YP_535885.1 1011376 R 364254 CDS YP_535886.1 90961970 3977452 complement(1012569..1014458) 1 NC_007929.1 COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases; UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase 1014458 3977452 LSL_0995 Lactobacillus salivarius UCC118 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase YP_535886.1 1012569 R 364254 CDS YP_535887.1 90961971 3977453 complement(1014478..1015140) 1 NC_007929.1 COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis; tyrosine-protein kinase 1015140 3977453 LSL_0996 Lactobacillus salivarius UCC118 tyrosine-protein kinase YP_535887.1 1014478 R 364254 CDS YP_535888.1 90961972 3977454 complement(1015145..1015888) 1 NC_007929.1 COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; chain length regulator 1015888 3977454 LSL_0997 Lactobacillus salivarius UCC118 chain length regulator YP_535888.1 1015145 R 364254 CDS YP_535889.1 90961973 3977455 complement(1016191..1016706) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 1016706 wecD 3977455 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535889.1 1016191 R 364254 CDS YP_535890.1 90961974 3977456 complement(1016726..1018096) 1 NC_007929.1 COG0144 [J] tRNA and rRNA cytosine-C5-methylases; 23S rRNA m(5)C methyltransferase 1018096 3977456 LSL_0999 Lactobacillus salivarius UCC118 23S rRNA m(5)C methyltransferase YP_535890.1 1016726 R 364254 CDS YP_535891.1 90961975 3977457 complement(1018106..1019083) 1 NC_007929.1 hypothetical protein 1019083 3977457 LSL_1000 Lactobacillus salivarius UCC118 hypothetical protein YP_535891.1 1018106 R 364254 CDS YP_535892.1 90961976 3977390 complement(1019092..1019865) 1 NC_007929.1 COG1073 [R] Hydrolases of the alpha/beta superfamily; hypothetical protein 1019865 3977390 LSL_1001 Lactobacillus salivarius UCC118 hypothetical protein YP_535892.1 1019092 R 364254 CDS YP_535893.1 90961977 3977391 1020013..1020822 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1020822 3977391 LSL_1002 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_535893.1 1020013 D 364254 CDS YP_535894.1 90961978 3977392 complement(1020863..1021390) 1 NC_007929.1 COG1670 [J] acetyltransferases, including N-acetylases of ribosomal proteins; acetyltransferase 1021390 wecD 3977392 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535894.1 1020863 R 364254 CDS YP_535895.1 90961979 3977393 complement(1021410..1022702) 1 NC_007929.1 COG0019 [E] Diaminopimelate decarboxylase; diaminopimelate decarboxylase 1022702 lysA 3977393 lysA Lactobacillus salivarius UCC118 diaminopimelate decarboxylase YP_535895.1 1021410 R 364254 CDS YP_535896.1 90961980 3977394 complement(1022847..1023035) 1 NC_007929.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 1023035 3977394 LSL_1005 Lactobacillus salivarius UCC118 4-oxalocrotonate tautomerase YP_535896.1 1022847 R 364254 CDS YP_535897.1 90961981 3977395 1023167..1024591 1 NC_007929.1 COG4690 [E] Dipeptidase; dipeptidase A 1024591 3977395 LSL_1006 Lactobacillus salivarius UCC118 dipeptidase A YP_535897.1 1023167 D 364254 CDS YP_535898.1 90961982 3977396 1024604..1025500 1 NC_007929.1 hypothetical protein 1025500 3977396 LSL_1007 Lactobacillus salivarius UCC118 hypothetical protein YP_535898.1 1024604 D 364254 CDS YP_535899.1 90961983 3977397 1025573..1026409 1 NC_007929.1 COG2207 [K] AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 1026409 3977397 LSL_1008 Lactobacillus salivarius UCC118 AraC family transcriptional regulator YP_535899.1 1025573 D 364254 CDS YP_535900.1 90961984 3977398 complement(1026439..1027044) 1 NC_007929.1 hypothetical protein 1027044 3977398 LSL_1009 Lactobacillus salivarius UCC118 hypothetical protein YP_535900.1 1026439 R 364254 CDS YP_535901.1 90961985 3977399 complement(1027037..1029274) 1 NC_007929.1 COG3345 [G] alpha-galactosidase; alpha-galactosidase 1029274 galA 3977399 galA Lactobacillus salivarius UCC118 alpha-galactosidase YP_535901.1 1027037 R 364254 CDS YP_535902.1 90961986 3977400 complement(1029276..1029392) 1 NC_007929.1 hypothetical protein 1029392 3977400 LSL_1011 Lactobacillus salivarius UCC118 hypothetical protein YP_535902.1 1029276 R 364254 CDS YP_535903.1 90961987 3977401 complement(1029459..1029899) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 1029899 wecD 3977401 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_535903.1 1029459 R 364254 CDS YP_535904.1 90961988 3977402 complement(1029920..1032880) 1 NC_007929.1 COG1061 [KL] DNA or RNA helicases of superfamily II; DNA/RNA helicase 1032880 ssl 3977402 ssl Lactobacillus salivarius UCC118 DNA/RNA helicase YP_535904.1 1029920 R 364254 CDS YP_535905.1 90961989 3977403 complement(1032867..1033289) 1 NC_007929.1 COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes; 7,8-dihydro-8-oxoguanine-triphosphatase 1033289 mutT 3977403 mutT Lactobacillus salivarius UCC118 7,8-dihydro-8-oxoguanine-triphosphatase YP_535905.1 1032867 R 364254 CDS YP_535906.1 90961990 3977404 1033581..1034870 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1034870 3977404 LSL_1015 Lactobacillus salivarius UCC118 ISL3 family transposase YP_535906.1 1033581 D 364254 CDS YP_535907.1 90961991 3977405 complement(1035017..1035763) 1 NC_007929.1 COG2200 [T] FOG: EAL domain; hypothetical protein 1035763 3977405 LSL_1016 Lactobacillus salivarius UCC118 hypothetical protein YP_535907.1 1035017 R 364254 CDS YP_535908.1 90961992 3977406 complement(1035862..1036722) 1 NC_007929.1 COG2199 [T] FOG: GGDEF domain; hypothetical protein 1036722 3977406 LSL_1017 Lactobacillus salivarius UCC118 hypothetical protein YP_535908.1 1035862 R 364254 CDS YP_535909.1 90961993 3977407 complement(1036709..1038781) 1 NC_007929.1 UDP-forming; cellulose synthase catalytic subunit 1038781 3977407 LSL_1018 Lactobacillus salivarius UCC118 cellulose synthase catalytic subunit YP_535909.1 1036709 R 364254 CDS YP_535910.1 90961994 3977408 complement(1038783..1040030) 1 NC_007929.1 COG1215 [M] Glycosyltransferases, probably involved in cell wall biogenesis; N-acetylglucosaminyltransferase 1040030 3977408 LSL_1019 Lactobacillus salivarius UCC118 N-acetylglucosaminyltransferase YP_535910.1 1038783 R 364254 CDS YP_535911.1 90961995 3977409 complement(1040039..1041223) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1041223 3977409 LSL_1020 Lactobacillus salivarius UCC118 hypothetical protein YP_535911.1 1040039 R 364254 CDS YP_535912.1 90961996 3977007 complement(1041220..1041609) 1 NC_007929.1 hypothetical protein 1041609 3977007 LSL_1021 Lactobacillus salivarius UCC118 hypothetical protein YP_535912.1 1041220 R 364254 CDS YP_535913.1 90961997 3977008 complement(1041606..1043066) 1 NC_007929.1 hypothetical protein 1043066 3977008 LSL_1022 Lactobacillus salivarius UCC118 hypothetical protein YP_535913.1 1041606 R 364254 CDS YP_535914.1 90961998 3977009 complement(1043078..1044133) 1 NC_007929.1 hypothetical protein 1044133 3977009 LSL_1023 Lactobacillus salivarius UCC118 hypothetical protein YP_535914.1 1043078 R 364254 CDS YP_535915.1 90961999 3977010 complement(1044078..1045253) 1 NC_007929.1 COG2199 [T] FOG: GGDEF domain; response regulator 1045253 3977010 LSL_1024 Lactobacillus salivarius UCC118 response regulator YP_535915.1 1044078 R 364254 CDS YP_535916.1 90962000 3977011 complement(1045639..1046928) 1 NC_007929.1 COG2252 [R] Permeases; guanine-hypoxanthine permease 1046928 3977011 LSL_1025 Lactobacillus salivarius UCC118 guanine-hypoxanthine permease YP_535916.1 1045639 R 364254 CDS YP_535917.1 90962001 3977012 complement(1047052..1048257) 1 NC_007929.1 COG1252 [C] NADH dehydrogenase, FAD-containing subunit; NADH dehydrogenase 1048257 ndh 3977012 ndh Lactobacillus salivarius UCC118 NADH dehydrogenase YP_535917.1 1047052 R 364254 CDS YP_535918.1 90962002 3977013 complement(1048271..1049176) 1 NC_007929.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1049176 menA 3977013 menA Lactobacillus salivarius UCC118 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_535918.1 1048271 R 364254 CDS YP_535919.1 90962003 3977014 1049424..1050410 1 NC_007929.1 COG0142 [H] Geranylgeranyl pyrophosphate synthase; farnesyl pyrophosphate synthetase / geranyltranstransferase / farnesyltransferase / heptaprenyl diphosphate synthase component II 1050410 3977014 LSL_1028 Lactobacillus salivarius UCC118 farnesyl pyrophosphate synthetase / geranyltranstransferase / farnesyltransferase / heptaprenyl diphosphate synthase component II YP_535919.1 1049424 D 364254 CDS YP_535920.1 90962004 3977015 complement(1050451..1052211) 1 NC_007929.1 COG4987 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components; transport ATP-binding protein 1052211 cydC 3977015 cydC Lactobacillus salivarius UCC118 transport ATP-binding protein YP_535920.1 1050451 R 364254 CDS YP_535921.1 90962005 3977016 complement(1052204..1053928) 1 NC_007929.1 COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; transport ATP-binding protein 1053928 cydD 3977016 cydD Lactobacillus salivarius UCC118 transport ATP-binding protein YP_535921.1 1052204 R 364254 CDS YP_535922.1 90962006 3977017 complement(1053928..1054944) 1 NC_007929.1 COG1294 [C] Cytochrome bd-type quinol oxidase, subunit 2; cytochrome d ubiquinol oxidase subunit II 1054944 cydB 3977017 cydB Lactobacillus salivarius UCC118 cytochrome d ubiquinol oxidase subunit II YP_535922.1 1053928 R 364254 CDS YP_535923.1 90962007 3977018 complement(1054945..1056363) 1 NC_007929.1 COG1271 [C] Cytochrome bd-type quinol oxidase, subunit 1; cytochrome d ubiquinol oxidase subunit I 1056363 cydA 3977018 cydA Lactobacillus salivarius UCC118 cytochrome d ubiquinol oxidase subunit I YP_535923.1 1054945 R 364254 CDS YP_535924.1 90962008 3977019 complement(1056646..1057656) 1 NC_007929.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1057656 asnA 3977019 asnA Lactobacillus salivarius UCC118 asparagine synthetase AsnA YP_535924.1 1056646 R 364254 CDS YP_535925.1 90962009 3977020 1057944..1058915 1 NC_007929.1 COG0513 [LKJ] Superfamily II DNA and RNA helicases; peptidoglycan binding protein 1058915 3977020 LSL_1034 Lactobacillus salivarius UCC118 peptidoglycan binding protein YP_535925.1 1057944 D 364254 CDS YP_535926.1 90962010 3977021 1059026..1059352 1 NC_007929.1 COG0607 [P] Rhodanese-related sulfurtransferase; rhodanese-related sulfurtransferases 1059352 3977021 LSL_1035 Lactobacillus salivarius UCC118 rhodanese-related sulfurtransferases YP_535926.1 1059026 D 364254 CDS YP_535927.1 90962011 3977022 1059960..1060613 1 NC_007929.1 peptidoglycan binding protein 1060613 3977022 LSL_1036 Lactobacillus salivarius UCC118 peptidoglycan binding protein YP_535927.1 1059960 D 364254 CDS YP_535928.1 90962012 3977023 complement(1060687..1061544) 1 NC_007929.1 COG0639 [T] Diadenosine tetraphosphatase and related serine/threonine protein phosphatases; hypothetical protein 1061544 3977023 LSL_1037 Lactobacillus salivarius UCC118 hypothetical protein YP_535928.1 1060687 R 364254 CDS YP_535929.1 90962013 3977024 complement(1061553..1062332) 1 NC_007929.1 COG1085 [C] Galactose-1-phosphate uridylyltransferase; hypothetical protein 1062332 3977024 LSL_1038 Lactobacillus salivarius UCC118 hypothetical protein YP_535929.1 1061553 R 364254 CDS YP_535930.1 90962014 3977025 complement(1062483..1062956) 1 NC_007929.1 hypothetical protein 1062956 3977025 LSL_1039 Lactobacillus salivarius UCC118 hypothetical protein YP_535930.1 1062483 R 364254 CDS YP_535931.1 90962015 3976741 1063106..1064092 1 NC_007929.1 COG1397 [O] ADP-ribosylglycohydrolase; ADP-ribosylglycohydrolase 1064092 draG 3976741 draG Lactobacillus salivarius UCC118 ADP-ribosylglycohydrolase YP_535931.1 1063106 D 364254 CDS YP_535932.1 90962016 3976742 1064286..1065125 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1065125 3976742 LSL_1041 Lactobacillus salivarius UCC118 hypothetical protein YP_535932.1 1064286 D 364254 CDS YP_535933.1 90962017 3976743 complement(1065203..1067998) 1 NC_007929.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1067998 ileS 3976743 ileS Lactobacillus salivarius UCC118 isoleucyl-tRNA synthetase YP_535933.1 1065203 R 364254 CDS YP_535934.1 90962018 3976744 complement(1068270..1069037) 1 NC_007929.1 COG3599 [D] Cell division initiation protein; cell division initiation protein 1069037 divIVA 3976744 divIVA Lactobacillus salivarius UCC118 cell division initiation protein YP_535934.1 1068270 R 364254 CDS YP_535935.1 90962019 3976745 complement(1069060..1069848) 1 NC_007929.1 COG2302 [S] Uncharacterized conserved protein, contains S4-like domain; RNA binding protein 1069848 3976745 LSL_1044 Lactobacillus salivarius UCC118 RNA binding protein YP_535935.1 1069060 R 364254 CDS YP_535936.1 90962020 3976746 complement(1069851..1070108) 1 NC_007929.1 COG0392 [S] Predicted integral membrane protein; integral membrane protein 1070108 3976746 LSL_1045 Lactobacillus salivarius UCC118 integral membrane protein YP_535936.1 1069851 R 364254 CDS YP_535937.1 90962021 3976747 complement(1070136..1070588) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1070588 3976747 LSL_1046 Lactobacillus salivarius UCC118 hypothetical protein YP_535937.1 1070136 R 364254 CDS YP_535938.1 90962022 3976748 complement(1070613..1071866) 1 NC_007929.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1071866 ftsZ 3976748 ftsZ Lactobacillus salivarius UCC118 cell division protein FtsZ YP_535938.1 1070613 R 364254 CDS YP_535939.1 90962023 3976749 complement(1071892..1073289) 1 NC_007929.1 COG0849 [D] Actin-like ATPase involved in cell division; cell division protein 1073289 ftsA 3976749 ftsA Lactobacillus salivarius UCC118 cell division protein YP_535939.1 1071892 R 364254 CDS YP_535940.1 90962024 3976750 complement(1073425..1074279) 1 NC_007929.1 COG1589 [M] Cell division septal protein; cell division protein 1074279 ftsQ 3976750 ftsQ Lactobacillus salivarius UCC118 cell division protein YP_535940.1 1073425 R 364254 CDS YP_535941.1 90962025 3976751 complement(1074314..1075411) 1 NC_007929.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1075411 murG 3976751 murG Lactobacillus salivarius UCC118 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_535941.1 1074314 R 364254 CDS YP_535942.1 90962026 3976752 complement(1075412..1076788) 1 NC_007929.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1076788 murD 3976752 murD Lactobacillus salivarius UCC118 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_535942.1 1075412 R 364254 CDS YP_535943.1 90962027 3976753 complement(1076817..1077785) 1 NC_007929.1 COG0472 [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 1077785 mraY 3976753 mraY Lactobacillus salivarius UCC118 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_535943.1 1076817 R 364254 CDS YP_535944.1 90962028 3976754 complement(1077796..1079952) 1 NC_007929.1 COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2; penicillin binding protein 2B 1079952 3976754 LSL_1053 Lactobacillus salivarius UCC118 penicillin binding protein 2B YP_535944.1 1077796 R 364254 CDS YP_535945.1 90962029 3976755 complement(1079949..1080305) 1 NC_007929.1 cell division protein ftsL 1080305 3976755 LSL_1054 Lactobacillus salivarius UCC118 cell division protein ftsL YP_535945.1 1079949 R 364254 CDS YP_535946.1 90962030 3976756 complement(1080326..1081270) 1 NC_007929.1 COG0275 [M] Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 1081270 mraW 3976756 mraW Lactobacillus salivarius UCC118 S-adenosyl-methyltransferase MraW YP_535946.1 1080326 R 364254 CDS YP_535947.1 90962031 3976757 complement(1081281..1081712) 1 NC_007929.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1081712 3976757 LSL_1056 Lactobacillus salivarius UCC118 cell division protein MraZ YP_535947.1 1081281 R 364254 CDS YP_535948.1 90962032 3976758 complement(1081929..1082294) 1 NC_007929.1 hypothetical protein 1082294 3976758 LSL_1057 Lactobacillus salivarius UCC118 hypothetical protein YP_535948.1 1081929 R 364254 CDS YP_535949.1 90962033 3976759 complement(1082308..1083504) 1 NC_007929.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1083504 lysC 3976759 lysC Lactobacillus salivarius UCC118 aspartate kinase I YP_535949.1 1082308 R 364254 CDS YP_535950.1 90962034 3976760 1083711..1083836 1 NC_007929.1 hypothetical protein 1083836 3976760 LSL_1059 Lactobacillus salivarius UCC118 hypothetical protein YP_535950.1 1083711 D 364254 CDS YP_535951.1 90962035 3977068 complement(1083881..1084816) 1 NC_007929.1 COG1073 [R] Hydrolases of the alpha/beta superfamily; cell surface hydrolase, membrane-bound 1084816 3977068 LSL_1060 Lactobacillus salivarius UCC118 cell surface hydrolase, membrane-bound YP_535951.1 1083881 R 364254 CDS YP_535952.1 90962036 3977069 complement(1084831..1085688) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; polar amino acid ABC transporter substrate-binding protein 1085688 3977069 LSL_1061 Lactobacillus salivarius UCC118 polar amino acid ABC transporter substrate-binding protein YP_535952.1 1084831 R 364254 CDS YP_535953.1 90962037 3977070 complement(1085706..1086344) 1 NC_007929.1 COG1126 [E] ABC-type polar amino acid transport system, ATPase component; polar amino acid ABC transporter ATP-binding protein 1086344 3977070 LSL_1062 Lactobacillus salivarius UCC118 polar amino acid ABC transporter ATP-binding protein YP_535953.1 1085706 R 364254 CDS YP_535954.1 90962038 3977071 complement(1086357..1086998) 1 NC_007929.1 COG0765 [E] ABC-type amino acid transport system, permease component; polar amino acid ABC transporter permease 1086998 3977071 LSL_1063 Lactobacillus salivarius UCC118 polar amino acid ABC transporter permease YP_535954.1 1086357 R 364254 CDS YP_535955.1 90962039 3977072 complement(1087403..1088206) 1 NC_007929.1 COG2894 [D] Septum formation inhibitor-activating ATPase; cell division inhibitor 1088206 minD 3977072 minD Lactobacillus salivarius UCC118 cell division inhibitor YP_535955.1 1087403 R 364254 CDS YP_535956.1 90962040 3977073 complement(1088208..1088879) 1 NC_007929.1 COG0850 [D] Septum formation inhibitor; cell division inhibitor 1088879 minC 3977073 minC Lactobacillus salivarius UCC118 cell division inhibitor YP_535956.1 1088208 R 364254 CDS YP_535957.1 90962041 3977074 complement(1088897..1089409) 1 NC_007929.1 COG1792 [M] Cell shape-determining protein; rod shape-determining protein 1089409 mreD 3977074 mreD Lactobacillus salivarius UCC118 rod shape-determining protein YP_535957.1 1088897 R 364254 CDS YP_535958.1 90962042 3977075 complement(1089421..1090275) 1 NC_007929.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1090275 mreC 3977075 mreC Lactobacillus salivarius UCC118 rod shape-determining protein MreC YP_535958.1 1089421 R 364254 CDS YP_535959.1 90962043 3977076 complement(1090390..1091397) 1 NC_007929.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1091397 mreB 3977076 mreB Lactobacillus salivarius UCC118 rod shape-determining protein MreB YP_535959.1 1090390 R 364254 CDS YP_535960.1 90962044 3977077 complement(1091569..1091778) 1 NC_007929.1 COG1278 [K] Cold shock proteins; cold shock protein 1091778 cspC 3977077 cspC Lactobacillus salivarius UCC118 cold shock protein YP_535960.1 1091569 R 364254 CDS YP_535961.1 90962045 3977078 complement(1091792..1092469) 1 NC_007929.1 COG2003 [L] DNA repair proteins; DNA repair protein 1092469 radC 3977078 radC Lactobacillus salivarius UCC118 DNA repair protein YP_535961.1 1091792 R 364254 CDS YP_535962.1 90962046 3977079 complement(1092523..1093824) 1 NC_007929.1 COG0285 [H] Folylpolyglutamate synthase; folylpolyglutamate synthase / dihydrofolate synthase 1093824 folC 3977079 folC Lactobacillus salivarius UCC118 folylpolyglutamate synthase / dihydrofolate synthase YP_535962.1 1092523 R 364254 CDS YP_535963.1 90962047 3977080 complement(1093919..1096579) 1 NC_007929.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1096579 valS 3977080 valS Lactobacillus salivarius UCC118 valyl-tRNA synthetase YP_535963.1 1093919 R 364254 CDS YP_535964.1 90962048 3977081 complement(1096885..1098102) 1 NC_007929.1 COG0301 [H] Thiamine biosynthesis ATP pyrophosphatase; thiamine biosynthesis protein 1098102 thiI 3977081 thiI Lactobacillus salivarius UCC118 thiamine biosynthesis protein YP_535964.1 1096885 R 364254 CDS YP_535965.1 90962049 3977082 complement(1098119..1099267) 1 NC_007929.1 COG1104 [E] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase / selenocysteine lyase 1099267 nifS 3977082 nifS Lactobacillus salivarius UCC118 cysteine desulfurase / selenocysteine lyase YP_535965.1 1098119 R 364254 CDS YP_535966.1 90962050 3977083 complement(1099402..1101114) 1 NC_007929.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 1101114 3977083 LSL_1075 Lactobacillus salivarius UCC118 septation ring formation regulator EzrA YP_535966.1 1099402 R 364254 CDS YP_535967.1 90962051 3977084 1101298..1101747 1 NC_007929.1 COG1956 [T] GAF domain-containing protein; GAF domain-containing protein 1101747 3977084 LSL_1076 Lactobacillus salivarius UCC118 GAF domain-containing protein YP_535967.1 1101298 D 364254 CDS YP_535968.1 90962052 3977085 1101963..1102568 1 NC_007929.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1102568 rpsD 3977085 rpsD Lactobacillus salivarius UCC118 30S ribosomal protein S4 YP_535968.1 1101963 D 364254 CDS YP_535969.1 90962053 3977086 1102717..1103199 1 NC_007929.1 hypothetical protein 1103199 3977086 LSL_1078 Lactobacillus salivarius UCC118 hypothetical protein YP_535969.1 1102717 D 364254 CDS YP_535970.1 90962054 3976581 1103221..1104492 1 NC_007929.1 COG2256 [L] ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 1104492 3976581 LSL_1079 Lactobacillus salivarius UCC118 recombination factor protein RarA YP_535970.1 1103221 D 364254 CDS YP_535971.1 90962055 3976582 1104777..1105082 1 NC_007929.1 hypothetical protein 1105082 3976582 LSL_1080 Lactobacillus salivarius UCC118 hypothetical protein YP_535971.1 1104777 D 364254 CDS YP_535972.1 90962056 3976583 1105199..1105702 1 NC_007929.1 COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 1105702 3976583 LSL_1081 Lactobacillus salivarius UCC118 universal stress protein YP_535972.1 1105199 D 364254 CDS YP_535973.1 90962057 3976584 complement(1105749..1106300) 1 NC_007929.1 COG2094 [L] 3-methyladenine DNA glycosylase; DNA-3-methyladenine glycosylase 1106300 3976584 LSL_1082 Lactobacillus salivarius UCC118 DNA-3-methyladenine glycosylase YP_535973.1 1105749 R 364254 CDS YP_535974.1 90962058 3976585 complement(1106450..1107586) 1 NC_007929.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1107586 ddl 3976585 ddl Lactobacillus salivarius UCC118 D-alanyl-alanine synthetase A YP_535974.1 1106450 R 364254 CDS YP_535975.1 90962059 3976586 complement(1107710..1108783) 1 NC_007929.1 COG0006 [E] Xaa-Pro aminopeptidase; Xaa-Pro dipeptidase 1108783 pepQ 3976586 pepQ Lactobacillus salivarius UCC118 Xaa-Pro dipeptidase YP_535975.1 1107710 R 364254 CDS YP_535976.1 90962060 3976587 complement(1109162..1111645) 1 NC_007929.1 COG3468 [MU] type V secretory pathway, adhesin AidA; surface protein 1111645 3976587 LSL_1085 Lactobacillus salivarius UCC118 surface protein YP_535976.1 1109162 R 364254 CDS YP_535977.1 90962061 3976588 complement(1111928..1112479) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1112479 3976588 LSL_1086 Lactobacillus salivarius UCC118 hypothetical protein YP_535977.1 1111928 R 364254 CDS YP_535978.1 90962062 3976589 complement(1112482..1112925) 1 NC_007929.1 hypothetical protein 1112925 3976589 LSL_1087 Lactobacillus salivarius UCC118 hypothetical protein YP_535978.1 1112482 R 364254 CDS YP_535979.1 90962063 3976590 complement(1113101..1115167) 1 NC_007929.1 COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 1115167 3976590 LSL_1088 Lactobacillus salivarius UCC118 penicillin-binding protein YP_535979.1 1113101 R 364254 CDS YP_535980.1 90962064 3976591 1115412..1118057 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1118057 3976591 LSL_1089 Lactobacillus salivarius UCC118 hypothetical protein YP_535980.1 1115412 D 364254 CDS YP_535981.1 90962065 3976592 complement(1118133..1118651) 1 NC_007929.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1118651 apt 3976592 apt Lactobacillus salivarius UCC118 adenine phosphoribosyltransferase YP_535981.1 1118133 R 364254 CDS YP_535982.1 90962066 3976593 complement(1118673..1121006) 1 NC_007929.1 COG0608 [L] Single-stranded DNA-specific exonuclease; single-stranded-DNA-specific exonuclease 1121006 recJ 3976593 recJ Lactobacillus salivarius UCC118 single-stranded-DNA-specific exonuclease YP_535982.1 1118673 R 364254 CDS YP_535983.1 90962067 3976594 complement(1121017..1121826) 1 NC_007929.1 COG0300 [R] Short-chain dehydrogenases of various substrate specificities; Short chain dehydrogenase 1121826 3976594 LSL_1092 Lactobacillus salivarius UCC118 Short chain dehydrogenase YP_535983.1 1121017 R 364254 CDS YP_535984.1 90962068 3976595 complement(1121823..1122776) 1 NC_007929.1 COG1234 [R] Metal-dependent hydrolases of the beta-lactamase superfamily III; ribonuclease Z 1122776 3976595 LSL_1093 Lactobacillus salivarius UCC118 ribonuclease Z YP_535984.1 1121823 R 364254 CDS YP_535985.1 90962069 3976596 1122922..1123254 1 NC_007929.1 hypothetical protein 1123254 3976596 LSL_1094 Lactobacillus salivarius UCC118 hypothetical protein YP_535985.1 1122922 D 364254 CDS YP_535986.1 90962070 3976597 1123333..1123587 1 NC_007929.1 hypothetical protein 1123587 3976597 LSL_1095 Lactobacillus salivarius UCC118 hypothetical protein YP_535986.1 1123333 D 364254 CDS YP_535987.1 90962071 3976598 complement(1123695..1125548) 1 NC_007929.1 COG1835 [I] Predicted acyltransferases; acyltransferase 1125548 3976598 LSL_1096 Lactobacillus salivarius UCC118 acyltransferase YP_535987.1 1123695 R 364254 CDS YP_535988.1 90962072 3976599 complement(1125579..1126877) 1 NC_007929.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1126877 obgE 3976599 obgE Lactobacillus salivarius UCC118 GTPase ObgE YP_535988.1 1125579 R 364254 CDS YP_535989.1 90962073 3977856 complement(1127001..1128773) 1 NC_007929.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1128773 uvrC 3977856 uvrC Lactobacillus salivarius UCC118 excinuclease ABC subunit C YP_535989.1 1127001 R 364254 CDS YP_535990.1 90962074 3977857 1128911..1129867 1 NC_007929.1 COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; glycerate dehydrogenase 1129867 serA 3977857 serA Lactobacillus salivarius UCC118 glycerate dehydrogenase YP_535990.1 1128911 D 364254 CDS YP_535991.1 90962075 3977858 1129948..1130085 1 NC_007929.1 hypothetical protein 1130085 3977858 LSL_1100 Lactobacillus salivarius UCC118 hypothetical protein YP_535991.1 1129948 D 364254 CDS YP_535992.1 90962076 3977860 complement(1130342..1130860) 1 NC_007929.1 COG0622 [R] Predicted phosphoesterase; phosphoesterase 1130860 3977860 LSL_1101 Lactobacillus salivarius UCC118 phosphoesterase YP_535992.1 1130342 R 364254 CDS YP_535993.1 90962077 3977861 complement(1130860..1131459) 1 NC_007929.1 COG0127 [F] Xanthosine triphosphate pyrophosphatase; HAM1 protein 1131459 3977861 LSL_1102 Lactobacillus salivarius UCC118 HAM1 protein YP_535993.1 1130860 R 364254 CDS YP_535994.1 90962078 3977862 1131647..1132144 1 NC_007929.1 hypothetical protein 1132144 3977862 LSL_1103 Lactobacillus salivarius UCC118 hypothetical protein YP_535994.1 1131647 D 364254 CDS YP_535995.1 90962079 3977863 complement(1132191..1132502) 1 NC_007929.1 COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin 1132502 trxA 3977863 trxA Lactobacillus salivarius UCC118 thioredoxin YP_535995.1 1132191 R 364254 CDS YP_535996.1 90962080 3977864 complement(1132574..1134934) 1 NC_007929.1 COG0249 [L] Mismatch repair ATPase (MutS family); DNA mismatch repair protein 1134934 mutS 3977864 mutS Lactobacillus salivarius UCC118 DNA mismatch repair protein YP_535996.1 1132574 R 364254 CDS YP_535997.1 90962081 3977865 complement(1134951..1135445) 1 NC_007929.1 COG1286 [R] Uncharacterized membrane protein, required for colicin V production; hypothetical protein 1135445 3977865 LSL_1106 Lactobacillus salivarius UCC118 hypothetical protein YP_535997.1 1134951 R 364254 CDS YP_535998.1 90962082 3977866 complement(1135458..1135703) 1 NC_007929.1 hypothetical protein 1135703 3977866 LSL_1107 Lactobacillus salivarius UCC118 hypothetical protein YP_535998.1 1135458 R 364254 CDS YP_535999.1 90962083 3977867 complement(1135794..1136090) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1136090 3977867 LSL_1108 Lactobacillus salivarius UCC118 hypothetical protein YP_535999.1 1135794 R 364254 CDS YP_536000.1 90962084 3977868 complement(1136102..1136533) 1 NC_007929.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1136533 3977868 LSL_1109 Lactobacillus salivarius UCC118 Holliday junction resolvase-like protein YP_536000.1 1136102 R 364254 CDS YP_536001.1 90962085 3977869 complement(1136545..1136805) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1136805 3977869 LSL_1110 Lactobacillus salivarius UCC118 hypothetical protein YP_536001.1 1136545 R 364254 CDS YP_536002.1 90962086 3977870 complement(1136973..1139615) 1 NC_007929.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1139615 alaS 3977870 alaS Lactobacillus salivarius UCC118 alanyl-tRNA synthetase YP_536002.1 1136973 R 364254 CDS YP_536003.1 90962087 3977871 complement(1139922..1141244) 1 NC_007929.1 COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 1141244 srmB 3977871 srmB Lactobacillus salivarius UCC118 ATP-dependent RNA helicase YP_536003.1 1139922 R 364254 CDS YP_536004.1 90962088 3977872 complement(1141267..1142241) 1 NC_007929.1 COG0618 [R] Exopolyphosphatase-related proteins; phosphoesterase, DHH family protein 1142241 3977872 LSL_1113 Lactobacillus salivarius UCC118 phosphoesterase, DHH family protein YP_536004.1 1141267 R 364254 CDS YP_536005.1 90962089 3977873 complement(1142864..1144057) 1 NC_007929.1 COG0282 [C] Acetate kinase; acetate kinase 1144057 ackA 3977873 ackA Lactobacillus salivarius UCC118 acetate kinase YP_536005.1 1142864 R 364254 CDS YP_536006.1 90962090 3976951 complement(1144242..1144973) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1144973 3976951 LSL_1115 Lactobacillus salivarius UCC118 hypothetical protein YP_536006.1 1144242 R 364254 CDS YP_536007.1 90962091 3976952 complement(1144966..1146483) 1 NC_007929.1 COG1139 [C] Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster-binding protein 1146483 3976952 LSL_1116 Lactobacillus salivarius UCC118 iron-sulfur cluster-binding protein YP_536007.1 1144966 R 364254 CDS YP_536008.1 90962092 3976953 complement(1146484..1147290) 1 NC_007929.1 COG0247 [C] Fe-S oxidoreductase; hypothetical protein 1147290 3976953 LSL_1117 Lactobacillus salivarius UCC118 hypothetical protein YP_536008.1 1146484 R 364254 CDS YP_536009.1 90962093 3976954 complement(1147613..1149049) 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1149049 3976954 LSL_1118 Lactobacillus salivarius UCC118 amino acid permease YP_536009.1 1147613 R 364254 CDS YP_536010.1 90962094 3976955 complement(1149236..1149676) 1 NC_007929.1 hypothetical protein 1149676 3976955 LSL_1119 Lactobacillus salivarius UCC118 hypothetical protein YP_536010.1 1149236 R 364254 CDS YP_536011.1 90962095 3976956 complement(1149845..1150297) 1 NC_007929.1 COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 1150297 3976956 LSL_1120 Lactobacillus salivarius UCC118 universal stress protein YP_536011.1 1149845 R 364254 CDS YP_536012.1 90962096 3976957 complement(1150400..1150696) 1 NC_007929.1 hypothetical protein 1150696 3976957 LSL_1121 Lactobacillus salivarius UCC118 hypothetical protein YP_536012.1 1150400 R 364254 CDS YP_536013.1 90962097 3976958 complement(1150849..1151229) 1 NC_007929.1 COG1862 [U] Preprotein translocase subunit YajC; protein translocase subunit 1151229 yajC 3976958 yajC Lactobacillus salivarius UCC118 protein translocase subunit YP_536013.1 1150849 R 364254 CDS YP_536014.1 90962098 3976959 complement(1151296..1152441) 1 NC_007929.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1152441 tgt 3976959 tgt Lactobacillus salivarius UCC118 queuine tRNA-ribosyltransferase YP_536014.1 1151296 R 364254 CDS YP_536015.1 90962099 3976960 complement(1152457..1153500) 1 NC_007929.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1153500 queA 3976960 queA Lactobacillus salivarius UCC118 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_536015.1 1152457 R 364254 CDS YP_536016.1 90962100 3976961 complement(1153506..1154516) 1 NC_007929.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1154516 ruvB 3976961 ruvB Lactobacillus salivarius UCC118 Holliday junction DNA helicase RuvB YP_536016.1 1153506 R 364254 CDS YP_536017.1 90962101 3976962 complement(1154555..1155160) 1 NC_007929.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1155160 ruvA 3976962 ruvA Lactobacillus salivarius UCC118 Holliday junction DNA helicase RuvA YP_536017.1 1154555 R 364254 CDS YP_536018.1 90962102 3976963 complement(1155177..1157156) 1 NC_007929.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1157156 mutL 3976963 mutL Lactobacillus salivarius UCC118 DNA mismatch repair protein YP_536018.1 1155177 R 364254 CDS YP_536019.1 90962103 3976964 complement(1157166..1159796) 1 NC_007929.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1159796 mutS 3976964 mutS Lactobacillus salivarius UCC118 DNA mismatch repair protein MutS YP_536019.1 1157166 R 364254 CDS YP_536020.1 90962104 3976965 complement(1159964..1161529) 1 NC_007929.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1161529 3976965 LSL_1129 Lactobacillus salivarius UCC118 phosphodiesterase YP_536020.1 1159964 R 364254 CDS YP_536021.1 90962105 3976966 complement(1161704..1162849) 1 NC_007929.1 COG0468 [L] RecA/RadA recombinase; recombinase A 1162849 recA 3976966 recA Lactobacillus salivarius UCC118 recombinase A YP_536021.1 1161704 R 364254 CDS YP_536022.1 90962106 3976967 complement(1163042..1163629) 1 NC_007929.1 COG0558 [I] Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1163629 pgsA 3976967 pgsA Lactobacillus salivarius UCC118 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_536022.1 1163042 R 364254 CDS YP_536023.1 90962107 3976968 complement(1163682..1164608) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; transcriptional regulator 1164608 3976968 LSL_1132 Lactobacillus salivarius UCC118 transcriptional regulator YP_536023.1 1163682 R 364254 CDS YP_536024.1 90962108 3976969 complement(1164690..1165415) 1 NC_007929.1 COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-oxoacyl-[acyl-carrier protein] reductase 1165415 fabG 3976969 fabG Lactobacillus salivarius UCC118 3-oxoacyl-[acyl-carrier protein] reductase YP_536024.1 1164690 R 364254 CDS YP_536025.1 90962109 3976970 complement(1165421..1166722) 1 NC_007929.1 COG0612 [R] Predicted Zn-dependent peptidases; M16 family peptidase 1166722 3976970 LSL_1134 Lactobacillus salivarius UCC118 M16 family peptidase YP_536025.1 1165421 R 364254 CDS YP_536026.1 90962110 3977875 complement(1168139..1170418) 1 NC_007929.1 COG1674 [D] DNA segregation ATPase FtsK/SpoIIIE and related proteins; cell division protein 1170418 ftsK 3977875 ftsK Lactobacillus salivarius UCC118 cell division protein YP_536026.1 1168139 R 364254 CDS YP_536027.1 90962111 3977876 complement(1170455..1170967) 1 NC_007929.1 COG0219 [J] Predicted rRNA methylase (SpoU class); 23S rRNA methyltransferase 1170967 3977876 LSL_1136 Lactobacillus salivarius UCC118 23S rRNA methyltransferase YP_536027.1 1170455 R 364254 CDS YP_536028.1 90962112 3977877 complement(1171208..1172059) 1 NC_007929.1 COG0500 [QR] SAM-dependent methyltransferases; 23S rRNA m(1)G 745 methyltransferase 1172059 3977877 LSL_1137 Lactobacillus salivarius UCC118 23S rRNA m(1)G 745 methyltransferase YP_536028.1 1171208 R 364254 CDS YP_536029.1 90962113 3977878 complement(1172059..1172574) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; transcriptional regulator 1172574 3977878 LSL_1138 Lactobacillus salivarius UCC118 transcriptional regulator YP_536029.1 1172059 R 364254 CDS YP_536030.1 90962114 3977879 1172799..1173776 1 NC_007929.1 COG0516 [F] IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 1173776 guaC 3977879 guaC Lactobacillus salivarius UCC118 guanosine 5'-monophosphate oxidoreductase YP_536030.1 1172799 D 364254 CDS YP_536031.1 90962115 3977880 1173980..1175257 1 NC_007929.1 COG1301 [C] Na+/H+-dicarboxylate symporters; proton/sodium-glutamate symport protein 1175257 gltP 3977880 gltP Lactobacillus salivarius UCC118 proton/sodium-glutamate symport protein YP_536031.1 1173980 D 364254 CDS YP_536032.1 90962116 3977881 complement(1175325..1175888) 1 NC_007929.1 copper homeostasis protein cutC 1175888 3977881 LSL_1141 Lactobacillus salivarius UCC118 copper homeostasis protein cutC YP_536032.1 1175325 R 364254 CDS YP_536033.1 90962117 3977882 complement(1175902..1176927) 1 NC_007929.1 COG2706 [G] 3-carboxymuconate cyclase; 6-phosphogluconolactonase 1176927 3977882 LSL_1142 Lactobacillus salivarius UCC118 6-phosphogluconolactonase YP_536033.1 1175902 R 364254 CDS YP_536034.1 90962118 3977883 1177069..1177419 1 NC_007929.1 COG3731 [G] Phosphotransferase system sorbitol-specific component IIA; PTS system, glucitol/sorbitol-specific IIA component 1177419 3977883 LSL_1143 Lactobacillus salivarius UCC118 PTS system, glucitol/sorbitol-specific IIA component YP_536034.1 1177069 D 364254 CDS YP_536035.1 90962119 3977884 complement(1177549..1178901) 1 NC_007929.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1178901 glmM 3977884 glmM Lactobacillus salivarius UCC118 phosphoglucosamine mutase YP_536035.1 1177549 R 364254 CDS YP_536036.1 90962120 3977885 complement(1178925..1180040) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1180040 3977885 LSL_1145 Lactobacillus salivarius UCC118 hypothetical protein YP_536036.1 1178925 R 364254 CDS YP_536037.1 90962121 3977886 complement(1180037..1180885) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1180885 3977886 LSL_1146 Lactobacillus salivarius UCC118 hypothetical protein YP_536037.1 1180037 R 364254 CDS YP_536038.1 90962122 3977887 1181118..1181801 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1181801 3977887 LSL_1147 Lactobacillus salivarius UCC118 hypothetical protein YP_536038.1 1181118 D 364254 CDS YP_536039.1 90962123 3977888 complement(1181836..1182735) 1 NC_007929.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1182735 murB 3977888 murB Lactobacillus salivarius UCC118 UDP-N-acetylenolpyruvoylglucosamine reductase YP_536039.1 1181836 R 364254 CDS YP_536040.1 90962124 3977889 1182884..1183417 1 NC_007929.1 COG0847 [L] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA-directed DNA polymerase III, epsilon chain 1183417 dnaQ 3977889 dnaQ Lactobacillus salivarius UCC118 DNA-directed DNA polymerase III, epsilon chain YP_536040.1 1182884 D 364254 CDS YP_536041.1 90962125 3977890 complement(1183489..1183941) 1 NC_007929.1 COG0802 [R] Predicted ATPase or kinase; ATP/GTP hydrolase 1183941 3977890 LSL_1150 Lactobacillus salivarius UCC118 ATP/GTP hydrolase YP_536041.1 1183489 R 364254 CDS YP_536042.1 90962126 3977891 complement(1183945..1184922) 1 NC_007929.1 COG0280 [C] Phosphotransacetylase; phosphate acetyltransferase 1184922 pta 3977891 pta Lactobacillus salivarius UCC118 phosphate acetyltransferase YP_536042.1 1183945 R 364254 CDS YP_536043.1 90962127 3977987 complement(1184956..1185654) 1 NC_007929.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1185654 ung 3977987 ung Lactobacillus salivarius UCC118 uracil-DNA glycosylase YP_536043.1 1184956 R 364254 CDS YP_536044.1 90962128 3977988 1185793..1186668 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1186668 3977988 LSL_1153 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_536044.1 1185793 D 364254 CDS YP_536045.1 90962129 3977989 1186698..1187237 1 NC_007929.1 hypothetical protein 1187237 3977989 LSL_1154 Lactobacillus salivarius UCC118 hypothetical protein YP_536045.1 1186698 D 364254 CDS YP_536046.1 90962130 3977990 complement(1187273..1187740) 1 NC_007929.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1187740 smpB 3977990 smpB Lactobacillus salivarius UCC118 SsrA-binding protein YP_536046.1 1187273 R 364254 CDS YP_536047.1 90962131 3977991 complement(1187766..1190165) 1 NC_007929.1 COG0557 [K] Exoribonuclease R; ribonuclease R 1 1190165 3977991 LSL_1156 Lactobacillus salivarius UCC118 ribonuclease R 1 YP_536047.1 1187766 R 364254 CDS YP_536048.1 90962132 3977992 complement(1190238..1190474) 1 NC_007929.1 COG1314 [U] Preprotein translocase subunit SecG; preprotein translocase subunit SecG 1190474 secG 3977992 secG Lactobacillus salivarius UCC118 preprotein translocase subunit SecG YP_536048.1 1190238 R 364254 CDS YP_536049.1 90962133 3977993 complement(1190534..1192072) 1 NC_007929.1 COG0038 [P] Chloride channel protein EriC; chloride channel protein 1192072 eriC 3977993 eriC Lactobacillus salivarius UCC118 chloride channel protein YP_536049.1 1190534 R 364254 CDS YP_536050.1 90962134 3977994 complement(1192252..1193433) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein 1193433 3977994 LSL_1159 Lactobacillus salivarius UCC118 multidrug resistance protein YP_536050.1 1192252 R 364254 CDS YP_536051.1 90962135 3977995 complement(1193500..1194978) 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; two component system histidine kinase 1194978 baeS 3977995 baeS Lactobacillus salivarius UCC118 two component system histidine kinase YP_536051.1 1193500 R 364254 CDS YP_536052.1 90962136 3977996 complement(1194978..1195697) 1 NC_007929.1 COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; two-component response regulator 1195697 3977996 LSL_1161 Lactobacillus salivarius UCC118 two-component response regulator YP_536052.1 1194978 R 364254 CDS YP_536053.1 90962137 3977997 complement(1195752..1196825) 1 NC_007929.1 COG0389 [L] Nucleotidyltransferase/DNA polymerase involved in DNA repair; DNA polymerase IV 1196825 dinP 3977997 dinP Lactobacillus salivarius UCC118 DNA polymerase IV YP_536053.1 1195752 R 364254 CDS YP_536054.1 90962138 3977998 complement(1196987..1198312) 1 NC_007929.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1198312 eno 3977998 eno Lactobacillus salivarius UCC118 phosphopyruvate hydratase YP_536054.1 1196987 R 364254 CDS YP_536055.1 90962139 3977999 complement(1198426..1199181) 1 NC_007929.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1199181 tpiA 3977999 tpiA Lactobacillus salivarius UCC118 triosephosphate isomerase YP_536055.1 1198426 R 364254 CDS YP_536056.1 90962140 3978000 complement(1199234..1200436) 1 NC_007929.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1200436 pgk 3978000 pgk Lactobacillus salivarius UCC118 phosphoglycerate kinase YP_536056.1 1199234 R 364254 CDS YP_536057.1 90962141 3978001 complement(1200542..1201555) 1 NC_007929.1 COG0057 [G] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase 1201555 gapA 3978001 gapA Lactobacillus salivarius UCC118 glyceraldehyde 3-phosphate dehydrogenase YP_536057.1 1200542 R 364254 CDS YP_536058.1 90962142 3978002 complement(1201618..1202646) 1 NC_007929.1 COG2390 [K] Transcriptional regulator, contains sigma factor-related N-terminal domain; central glycolytic genes regulator 1202646 3978002 LSL_1167 Lactobacillus salivarius UCC118 central glycolytic genes regulator YP_536058.1 1201618 R 364254 CDS YP_536059.1 90962143 3978004 1203248..1203841 1 NC_007929.1 COG0740 [OU] Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 1203841 clpP 3978004 clpP Lactobacillus salivarius UCC118 ATP-dependent Clp protease proteolytic subunit YP_536059.1 1203248 D 364254 CDS YP_536060.1 90962144 3978005 complement(1203891..1204838) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1204838 3978005 LSL_1169 Lactobacillus salivarius UCC118 hypothetical protein YP_536060.1 1203891 R 364254 CDS YP_536061.1 90962145 3977026 complement(1204861..1205874) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1205874 3977026 LSL_1170 Lactobacillus salivarius UCC118 hypothetical protein YP_536061.1 1204861 R 364254 CDS YP_536062.1 90962146 3977027 complement(1205871..1206758) 1 NC_007929.1 COG1660 [R] Predicted P-loop-containing kinase; contains P-loop; hypothetical protein 1206758 3977027 LSL_1171 Lactobacillus salivarius UCC118 hypothetical protein YP_536062.1 1205871 R 364254 CDS YP_536063.1 90962147 3977028 complement(1206936..1207577) 1 NC_007929.1 COG0702 [MG] Predicted nucleoside-diphosphate-sugar epimerases; oxidoreductase 1207577 3977028 LSL_1172 Lactobacillus salivarius UCC118 oxidoreductase YP_536063.1 1206936 R 364254 CDS YP_536064.1 90962148 3977029 complement(1207601..1208071) 1 NC_007929.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1208071 luxS 3977029 luxS Lactobacillus salivarius UCC118 S-ribosylhomocysteinase YP_536064.1 1207601 R 364254 CDS YP_536065.1 90962149 3977030 complement(1208147..1210981) 1 NC_007929.1 COG0178 [L] Excinuclease ATPase subunit; excinuclease ABC subunit A 1210981 uvrA 3977030 uvrA Lactobacillus salivarius UCC118 excinuclease ABC subunit A YP_536065.1 1208147 R 364254 CDS YP_536066.1 90962150 3977031 complement(1211000..1213000) 1 NC_007929.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1213000 uvrB 3977031 uvrB Lactobacillus salivarius UCC118 excinuclease ABC subunit B YP_536066.1 1211000 R 364254 CDS YP_536067.1 90962151 3977032 complement(1213148..1214875) 1 NC_007929.1 COG1109 [G] Phosphomannomutase; phosphoglucomutase 1214875 glmM 3977032 glmM Lactobacillus salivarius UCC118 phosphoglucomutase YP_536067.1 1213148 R 364254 CDS YP_536068.1 90962152 3977033 complement(1214945..1215754) 1 NC_007929.1 COG0682 [M] Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase 1215754 lgt 3977033 lgt Lactobacillus salivarius UCC118 prolipoprotein diacylglyceryl transferase YP_536068.1 1214945 R 364254 CDS YP_536069.1 90962153 3977034 complement(1215769..1216701) 1 NC_007929.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 1216701 hprK 3977034 hprK Lactobacillus salivarius UCC118 HPr kinase/phosphorylase YP_536069.1 1215769 R 364254 CDS YP_536070.1 90962154 3977035 complement(1216774..1217127) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1217127 3977035 LSL_1179 Lactobacillus salivarius UCC118 hypothetical protein YP_536070.1 1216774 R 364254 CDS YP_536071.1 90962155 3977036 complement(1217131..1217469) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; stress-responsive transcriptional regulator PspC 1217469 3977036 LSL_1180 Lactobacillus salivarius UCC118 stress-responsive transcriptional regulator PspC YP_536071.1 1217131 R 364254 CDS YP_536072.1 90962156 3977037 complement(1217482..1218867) 1 NC_007929.1 COG0642 [T] signal transduction histidine kinase; two component system histidine kinase 1218867 baeS 3977037 baeS Lactobacillus salivarius UCC118 two component system histidine kinase YP_536072.1 1217482 R 364254 CDS YP_536073.1 90962157 3977038 complement(1218867..1219568) 1 NC_007929.1 COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; alkaline phosphatase synthesis transcriptional regulatory protein PhoP 1219568 3977038 LSL_1182 Lactobacillus salivarius UCC118 alkaline phosphatase synthesis transcriptional regulatory protein PhoP YP_536073.1 1218867 R 364254 CDS YP_536074.1 90962158 3977039 complement(1219584..1220711) 1 NC_007929.1 COG0265 [O] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; hypothetical protein 1220711 3977039 LSL_1183 Lactobacillus salivarius UCC118 hypothetical protein YP_536074.1 1219584 R 364254 CDS YP_536075.1 90962159 3977040 1220929..1222218 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1222218 3977040 LSL_1184 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536075.1 1220929 D 364254 CDS YP_536076.1 90962160 3977041 complement(1222388..1223455) 1 NC_007929.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 1223455 prfB 3977041 prfB Lactobacillus salivarius UCC118 peptide chain release factor 2 YP_536076.1 1222388 R 364254 CDS YP_536077.1 90962161 3977042 complement(1223594..1225957) 1 NC_007929.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1225957 secA 3977042 secA Lactobacillus salivarius UCC118 preprotein translocase subunit SecA YP_536077.1 1223594 R 364254 CDS YP_536078.1 90962162 3977043 complement(1226082..1227260) 1 NC_007929.1 COG2807 [P] Cyanate permease; major facilitator transporter 1227260 3977043 LSL_1187 Lactobacillus salivarius UCC118 major facilitator transporter YP_536078.1 1226082 R 364254 CDS YP_536079.1 90962163 3977044 complement(1227384..1227938) 1 NC_007929.1 COG1544 [J] Ribosome-associated protein Y (PSrp-1); ribosome-associated factor Y 1227938 3977044 LSL_1188 Lactobacillus salivarius UCC118 ribosome-associated factor Y YP_536079.1 1227384 R 364254 CDS YP_536080.1 90962164 3976875 complement(1228181..1229326) 1 NC_007929.1 COG0582 [L] Integrase; phage integrase 1229326 xerC 3976875 xerC Lactobacillus salivarius UCC118 phage integrase YP_536080.1 1228181 R 364254 CDS YP_536081.1 90962165 3976876 complement(1229718..1230119) 1 NC_007929.1 hypothetical protein 1230119 3976876 LSL_1190 Lactobacillus salivarius UCC118 hypothetical protein YP_536081.1 1229718 R 364254 CDS YP_536082.1 90962166 3976877 complement(1230097..1230594) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; Cro/CI family phage transcriptional regulator 1230594 3976877 LSL_1191 Lactobacillus salivarius UCC118 Cro/CI family phage transcriptional regulator YP_536082.1 1230097 R 364254 CDS YP_536083.1 90962167 3976878 1230734..1230922 1 NC_007929.1 phage repressor proteins 1230922 3976878 LSL_1192 Lactobacillus salivarius UCC118 phage repressor proteins YP_536083.1 1230734 D 364254 CDS YP_536084.1 90962168 3976879 1230943..1231323 1 NC_007929.1 phage immunity repressor 1231323 3976879 LSL_1193 Lactobacillus salivarius UCC118 phage immunity repressor YP_536084.1 1230943 D 364254 CDS YP_536085.1 90962169 3976880 1231367..1231705 1 NC_007929.1 hypothetical protein 1231705 3976880 LSL_1194 Lactobacillus salivarius UCC118 hypothetical protein YP_536085.1 1231367 D 364254 CDS YP_536086.1 90962170 3976881 1231720..1231938 1 NC_007929.1 hypothetical protein 1231938 3976881 LSL_1195 Lactobacillus salivarius UCC118 hypothetical protein YP_536086.1 1231720 D 364254 CDS YP_536087.1 90962171 3976882 1231935..1232267 1 NC_007929.1 hypothetical protein 1232267 3976882 LSL_1196 Lactobacillus salivarius UCC118 hypothetical protein YP_536087.1 1231935 D 364254 CDS YP_536088.1 90962172 3976883 1232261..1232389 1 NC_007929.1 hypothetical protein 1232389 3976883 LSL_1197 Lactobacillus salivarius UCC118 hypothetical protein YP_536088.1 1232261 D 364254 CDS YP_536089.1 90962173 3976884 1232541..1232783 1 NC_007929.1 hypothetical protein 1232783 3976884 LSL_1198 Lactobacillus salivarius UCC118 hypothetical protein YP_536089.1 1232541 D 364254 CDS YP_536090.1 90962174 3976885 complement(1232735..1232929) 1 NC_007929.1 hypothetical protein 1232929 3976885 LSL_1199 Lactobacillus salivarius UCC118 hypothetical protein YP_536090.1 1232735 R 364254 CDS YP_536091.1 90962175 3976886 1232972..1233397 1 NC_007929.1 hypothetical protein 1233397 3976886 LSL_1200 Lactobacillus salivarius UCC118 hypothetical protein YP_536091.1 1232972 D 364254 CDS YP_536092.1 90962176 3976887 1233402..1234172 1 NC_007929.1 hypothetical protein 1234172 3976887 LSL_1201 Lactobacillus salivarius UCC118 hypothetical protein YP_536092.1 1233402 D 364254 CDS YP_536093.1 90962177 3976888 1234187..1235737 1 NC_007929.1 COG0433 [R] Predicted ATPase; DNA primase 1235737 3976888 LSL_1202 Lactobacillus salivarius UCC118 DNA primase YP_536093.1 1234187 D 364254 CDS YP_536094.1 90962178 3976889 1236048..1236356 1 NC_007929.1 hypothetical protein 1236356 3976889 LSL_1203 Lactobacillus salivarius UCC118 hypothetical protein YP_536094.1 1236048 D 364254 CDS YP_536095.1 90962179 3976890 1236415..1236855 1 NC_007929.1 hypothetical protein 1236855 3976890 LSL_1204 Lactobacillus salivarius UCC118 hypothetical protein YP_536095.1 1236415 D 364254 CDS YP_536096.1 90962180 3976891 1236862..1237086 1 NC_007929.1 hypothetical protein 1237086 3976891 LSL_1205 Lactobacillus salivarius UCC118 hypothetical protein YP_536096.1 1236862 D 364254 CDS YP_536097.1 90962181 3976892 complement(1238432..1239118) 1 NC_007929.1 COG1040 [R] Predicted amidophosphoribosyltransferases; ComF operon protein 3 1239118 comFC 3976892 comFC Lactobacillus salivarius UCC118 ComF operon protein 3 YP_536097.1 1238432 R 364254 CDS YP_536098.1 90962182 3976721 complement(1239115..1240452) 1 NC_007929.1 COG4098 [L] Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); ComF operon protein 1 1240452 3976721 LSL_1207 Lactobacillus salivarius UCC118 ComF operon protein 1 YP_536098.1 1239115 R 364254 CDS YP_536099.1 90962183 3976722 complement(1240532..1241623) 1 NC_007929.1 COG0472 [M] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase 1241623 3976722 LSL_1208 Lactobacillus salivarius UCC118 undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase YP_536099.1 1240532 R 364254 CDS YP_536100.1 90962184 3976723 complement(1241774..1243603) 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1243603 3976723 LSL_1209 Lactobacillus salivarius UCC118 amino acid permease YP_536100.1 1241774 R 364254 CDS YP_536101.1 90962185 3976724 complement(1243787..1246189) 1 NC_007929.1 COG0474 [P] Cation transport ATPase; cation-transporting ATPase 1246189 3976724 LSL_1210 Lactobacillus salivarius UCC118 cation-transporting ATPase YP_536101.1 1243787 R 364254 CDS YP_536102.1 90962186 3976725 complement(1246385..1248007) 1 NC_007929.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1248007 groEL 3976725 groEL Lactobacillus salivarius UCC118 molecular chaperone GroEL YP_536102.1 1246385 R 364254 CDS YP_536103.1 90962187 3976726 complement(1248037..1248321) 1 NC_007929.1 COG0234 [O] Co-chaperonin GroES (HSP10); molecular chaperone GroES 1248321 groS 3976726 groS Lactobacillus salivarius UCC118 molecular chaperone GroES YP_536103.1 1248037 R 364254 CDS YP_536104.1 90962188 3976727 1248505..1249146 1 NC_007929.1 COG1266 [R] Predicted metal-dependent membrane protease; CAAX family protease 1249146 3976727 LSL_1213 Lactobacillus salivarius UCC118 CAAX family protease YP_536104.1 1248505 D 364254 CDS YP_536105.1 90962189 3976728 complement(1249248..1249889) 1 NC_007929.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1249889 3976728 LSL_1214 Lactobacillus salivarius UCC118 redox-sensing transcriptional repressor Rex YP_536105.1 1249248 R 364254 CDS YP_536106.1 90962190 3976729 1250063..1252012 1 NC_007929.1 COG0488 [R] ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter, ATP-binding protein 1252012 3976729 LSL_1215 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536106.1 1250063 D 364254 CDS YP_536107.1 90962191 3976730 complement(1252076..1253107) 1 NC_007929.1 COG0533 [O] Metal-dependent proteases with possible chaperone activity; O-sialoglycoprotein endopeptidase 1253107 gcp 3976730 gcp Lactobacillus salivarius UCC118 O-sialoglycoprotein endopeptidase YP_536107.1 1252076 R 364254 CDS YP_536108.1 90962192 3976731 complement(1253131..1253637) 1 NC_007929.1 COG0456 [R] acetyltransferases; ribosomal-protein-S18-alanine acetyltransferase 1253637 rimI 3976731 rimI Lactobacillus salivarius UCC118 ribosomal-protein-S18-alanine acetyltransferase YP_536108.1 1253131 R 364254 CDS YP_536109.1 90962193 3976732 complement(1253642..1254373) 1 NC_007929.1 COG1214 [O] Inactive homolog of metal-dependent proteases, molecular chaperone; glycoprotein endopeptidase 1254373 3976732 LSL_1218 Lactobacillus salivarius UCC118 glycoprotein endopeptidase YP_536109.1 1253642 R 364254 CDS YP_536110.1 90962194 3976733 1254525..1255505 1 NC_007929.1 COG0252 [EJ] L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase 1255505 ansB 3976733 ansB Lactobacillus salivarius UCC118 L-asparaginase YP_536110.1 1254525 D 364254 CDS YP_536111.1 90962195 3976734 complement(1255572..1256309) 1 NC_007929.1 COG3884 [I] acyl-ACP thioesterase; acyl-acyl carrier protein thioesterase 1256309 3976734 LSL_1220 Lactobacillus salivarius UCC118 acyl-acyl carrier protein thioesterase YP_536111.1 1255572 R 364254 CDS YP_536112.1 90962196 3976735 complement(1256321..1257202) 1 NC_007929.1 COG0313 [R] Predicted methyltransferases; tetrapyrrole (Corrin/Porphyrin) methylase family protein 1257202 3976735 LSL_1221 Lactobacillus salivarius UCC118 tetrapyrrole (Corrin/Porphyrin) methylase family protein YP_536112.1 1256321 R 364254 CDS YP_536113.1 90962197 3976736 complement(1257202..1257546) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; initiation-control protein 1257546 3976736 LSL_1222 Lactobacillus salivarius UCC118 initiation-control protein YP_536113.1 1257202 R 364254 CDS YP_536114.1 90962198 3976737 complement(1257561..1258553) 1 NC_007929.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1258553 holB 3976737 holB Lactobacillus salivarius UCC118 DNA polymerase III subunit delta' YP_536114.1 1257561 R 364254 CDS YP_536115.1 90962199 3976738 complement(1258588..1259214) 1 NC_007929.1 COG0125 [F] Thymidylate kinase; thymidylate kinase 1259214 tmk 3976738 tmk Lactobacillus salivarius UCC118 thymidylate kinase YP_536115.1 1258588 R 364254 CDS YP_536116.1 90962200 3976739 complement(1259334..1259573) 1 NC_007929.1 hypothetical protein 1259573 3976739 LSL_1225 Lactobacillus salivarius UCC118 hypothetical protein YP_536116.1 1259334 R 364254 CDS YP_536117.1 90962201 3976740 complement(1259587..1260186) 1 NC_007929.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1260186 recR 3976740 recR Lactobacillus salivarius UCC118 recombination protein RecR YP_536117.1 1259587 R 364254 CDS YP_536118.1 90962202 3976422 complement(1260213..1260527) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1260527 3976422 LSL_1227 Lactobacillus salivarius UCC118 hypothetical protein YP_536118.1 1260213 R 364254 CDS YP_536119.1 90962203 3976423 complement(1260545..1262284) 1 NC_007929.1 COG2812 [L] DNA polymerase III, gamma/tau subunits; DNA polymerase III subunit gamma/tau 1262284 dnaX 3976423 dnaX Lactobacillus salivarius UCC118 DNA polymerase III subunit gamma/tau YP_536119.1 1260545 R 364254 CDS YP_536120.1 90962204 3976424 complement(1262491..1262991) 1 NC_007929.1 COG0590 [FJ] Cytosine/adenosine deaminases; cytosine/adenosine deaminase 1262991 3976424 LSL_1229 Lactobacillus salivarius UCC118 cytosine/adenosine deaminase YP_536120.1 1262491 R 364254 CDS YP_536121.1 90962205 3976426 1263819..1264049 1 NC_007929.1 COG0695 [O] Glutaredoxin and related proteins; glutaredoxin 1264049 grxC 3976426 grxC Lactobacillus salivarius UCC118 glutaredoxin YP_536121.1 1263819 D 364254 CDS YP_536122.1 90962206 3976427 1264046..1264429 1 NC_007929.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1264429 nrdI 3976427 nrdI Lactobacillus salivarius UCC118 ribonucleotide reductase stimulatory protein YP_536122.1 1264046 D 364254 CDS YP_536123.1 90962207 3976428 1264410..1266581 1 NC_007929.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1266581 nrdA 3976428 nrdA Lactobacillus salivarius UCC118 ribonucleotide-diphosphate reductase subunit alpha YP_536123.1 1264410 D 364254 CDS YP_536124.1 90962208 3976429 1266599..1267579 1 NC_007929.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1267579 nrdF 3976429 nrdF Lactobacillus salivarius UCC118 ribonucleotide-diphosphate reductase subunit beta YP_536124.1 1266599 D 364254 CDS YP_536125.1 90962209 3976430 complement(1267656..1270229) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1270229 3976430 LSL_1234 Lactobacillus salivarius UCC118 hypothetical protein YP_536125.1 1267656 R 364254 CDS YP_536126.1 90962210 3976431 complement(1270315..1270758) 1 NC_007929.1 hypothetical protein 1270758 3976431 LSL_1236 Lactobacillus salivarius UCC118 hypothetical protein YP_536126.1 1270315 R 364254 CDS YP_536127.1 90962211 3976432 complement(1270871..1271239) 1 NC_007929.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1271239 rplL 3976432 rplL Lactobacillus salivarius UCC118 50S ribosomal protein L7/L12 YP_536127.1 1270871 R 364254 CDS YP_536128.1 90962212 3976433 complement(1271311..1271814) 1 NC_007929.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1271814 rplJ 3976433 rplJ Lactobacillus salivarius UCC118 50S ribosomal protein L10 YP_536128.1 1271311 R 364254 CDS YP_536129.1 90962213 3976434 complement(1272059..1272751) 1 NC_007929.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1272751 rplA 3976434 rplA Lactobacillus salivarius UCC118 50S ribosomal protein L1 YP_536129.1 1272059 R 364254 CDS YP_536130.1 90962214 3976435 complement(1272854..1273279) 1 NC_007929.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1273279 rplK 3976435 rplK Lactobacillus salivarius UCC118 50S ribosomal protein L11 YP_536130.1 1272854 R 364254 CDS YP_536131.1 90962215 3976436 complement(1273402..1273962) 1 NC_007929.1 COG0250 [K] Transcription antiterminator; transcription antitermination protein 1273962 nusG 3976436 nusG Lactobacillus salivarius UCC118 transcription antitermination protein YP_536131.1 1273402 R 364254 CDS YP_536132.1 90962216 3976437 complement(1274077..1274244) 1 NC_007929.1 protein translocase subunit secE 1274244 3976437 LSL_1242 Lactobacillus salivarius UCC118 protein translocase subunit secE YP_536132.1 1274077 R 364254 CDS YP_536133.1 90962217 3976438 complement(1274264..1274416) 1 NC_007929.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 1274416 rpmG 3976438 rpmG Lactobacillus salivarius UCC118 50S ribosomal protein L33 YP_536133.1 1274264 R 364254 CDS YP_536134.1 90962218 3976439 complement(1274481..1275011) 1 NC_007929.1 COG3688 [R] Predicted RNA-binding protein containing a PIN domain; hypothetical protein 1275011 3976439 LSL_1244 Lactobacillus salivarius UCC118 hypothetical protein YP_536134.1 1274481 R 364254 CDS YP_536135.1 90962219 3977277 complement(1275013..1275759) 1 NC_007929.1 COG0566 [J] rRNA methylases; tRNA/rRNA methyltransferase 1275759 spoU 3977277 spoU Lactobacillus salivarius UCC118 tRNA/rRNA methyltransferase YP_536135.1 1275013 R 364254 CDS YP_536136.1 90962220 3977278 complement(1275759..1276166) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1276166 3977278 LSL_1246 Lactobacillus salivarius UCC118 hypothetical protein YP_536136.1 1275759 R 364254 CDS YP_536137.1 90962221 3977279 complement(1276159..1277571) 1 NC_007929.1 COG0215 [J] Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 1277571 cysS 3977279 cysS Lactobacillus salivarius UCC118 cysteinyl-tRNA synthetase YP_536137.1 1276159 R 364254 CDS YP_536138.1 90962222 3977280 complement(1277725..1279212) 1 NC_007929.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1279212 gltX 3977280 gltX Lactobacillus salivarius UCC118 glutamyl-tRNA synthetase YP_536138.1 1277725 R 364254 CDS YP_536139.1 90962223 3977281 complement(1279343..1280455) 1 NC_007929.1 COG4956 [R] Integral membrane protein (PIN domain superfamily); PilT family ATPase 1280455 3977281 LSL_1249 Lactobacillus salivarius UCC118 PilT family ATPase YP_536139.1 1279343 R 364254 CDS YP_536140.1 90962224 3977282 complement(1280481..1281854) 1 NC_007929.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1281854 radA 3977282 radA Lactobacillus salivarius UCC118 DNA repair protein RadA YP_536140.1 1280481 R 364254 CDS YP_536141.1 90962225 3977283 complement(1281872..1282408) 1 NC_007929.1 COG0756 [F] dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 1282408 dut 3977283 dut Lactobacillus salivarius UCC118 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_536141.1 1281872 R 364254 CDS YP_536142.1 90962226 3977284 1282564..1282842 1 NC_007929.1 acetyltransferase 1282842 wecD 3977284 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536142.1 1282564 D 364254 CDS YP_536143.1 90962227 3977285 1282931..1284265 1 NC_007929.1 COG3579 [E] Aminopeptidase C; aminopeptidase C 1284265 pepC 3977285 pepC Lactobacillus salivarius UCC118 aminopeptidase C YP_536143.1 1282931 D 364254 CDS YP_536144.1 90962228 3977286 1284475..1284828 1 NC_007929.1 bacteriocin immunity protein 1284828 3977286 LSL_1254 Lactobacillus salivarius UCC118 bacteriocin immunity protein YP_536144.1 1284475 D 364254 CDS YP_536145.1 90962229 3977287 complement(1284995..1285669) 1 NC_007929.1 COG0588 [G] Phosphoglycerate mutase 1; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1285669 gpmA 3977287 gpmA Lactobacillus salivarius UCC118 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase YP_536145.1 1284995 R 364254 CDS YP_536146.1 90962230 3977288 complement(1285691..1286635) 1 NC_007929.1 COG0679 [R] Predicted permeases; malate permease 1286635 3977288 LSL_1256 Lactobacillus salivarius UCC118 malate permease YP_536146.1 1285691 R 364254 CDS YP_536147.1 90962231 3977289 complement(1286694..1287674) 1 NC_007929.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1287674 fabH 3977289 fabH Lactobacillus salivarius UCC118 3-oxoacyl-(acyl carrier protein) synthase III YP_536147.1 1286694 R 364254 CDS YP_536148.1 90962232 3977291 complement(1287897..1288334) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1288334 3977291 LSL_1258 Lactobacillus salivarius UCC118 hypothetical protein YP_536148.1 1287897 R 364254 CDS YP_536149.1 90962233 3977292 complement(1288327..1290498) 1 NC_007929.1 COG2183 [K] Transcriptional accessory protein; contains S1 RNA binding domain; transcription accessory protein 1290498 3977292 LSL_1259 Lactobacillus salivarius UCC118 transcription accessory protein YP_536149.1 1288327 R 364254 CDS YP_536150.1 90962234 3977293 complement(1290568..1291395) 1 NC_007929.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1291395 nadE 3977293 nadE Lactobacillus salivarius UCC118 NAD synthetase YP_536150.1 1290568 R 364254 CDS YP_536151.1 90962235 3977294 complement(1291415..1292881) 1 NC_007929.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1292881 pncB 3977294 pncB Lactobacillus salivarius UCC118 nicotinate phosphoribosyltransferase YP_536151.1 1291415 R 364254 CDS YP_536152.1 90962236 3977295 1293033..1293767 1 NC_007929.1 COG1922 [M] Teichoic acid biosynthesis proteins; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase 1293767 3977295 LSL_1262 Lactobacillus salivarius UCC118 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase YP_536152.1 1293033 D 364254 CDS YP_536153.1 90962237 3976459 complement(1293840..1294538) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; GntR family transcriptional regulator 1294538 3976459 LSL_1263 Lactobacillus salivarius UCC118 GntR family transcriptional regulator YP_536153.1 1293840 R 364254 CDS YP_536154.1 90962238 3976460 complement(1294554..1295348) 1 NC_007929.1 COG0345 [E] Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1295348 proC 3976460 proC Lactobacillus salivarius UCC118 pyrroline-5-carboxylate reductase YP_536154.1 1294554 R 364254 CDS YP_536155.1 90962239 3976463 complement(1295740..1297209) 1 NC_007929.1 COG3104 [E] Dipeptide/tripeptide permease; di-/tripeptide transporter 1297209 3976463 LSL_1265 Lactobacillus salivarius UCC118 di-/tripeptide transporter YP_536155.1 1295740 R 364254 CDS YP_536156.1 90962240 3976467 complement(1302751..1303635) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; ribonuclease BN 1303635 3976467 LSL_1266 Lactobacillus salivarius UCC118 ribonuclease BN YP_536156.1 1302751 R 364254 CDS YP_536157.1 90962241 3976468 complement(1303653..1304096) 1 NC_007929.1 hypothetical protein 1304096 3976468 LSL_1267 Lactobacillus salivarius UCC118 hypothetical protein YP_536157.1 1303653 R 364254 CDS YP_536158.1 90962242 3976469 complement(1304213..1305085) 1 NC_007929.1 COG1210 [M] UDP-glucose pyrophosphorylase; UTP--glucose-1-phosphate uridylyltransferase 1305085 galU 3976469 galU Lactobacillus salivarius UCC118 UTP--glucose-1-phosphate uridylyltransferase YP_536158.1 1304213 R 364254 CDS YP_536159.1 90962243 3976470 complement(1305255..1306046) 1 NC_007929.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1306046 map 3976470 map Lactobacillus salivarius UCC118 methionine aminopeptidase YP_536159.1 1305255 R 364254 CDS YP_536160.1 90962244 3976471 1306203..1306658 1 NC_007929.1 COG0716 [C] Flavodoxins; flavodoxin 1306658 fldA 3976471 fldA Lactobacillus salivarius UCC118 flavodoxin YP_536160.1 1306203 D 364254 CDS YP_536161.1 90962245 3976472 1306658..1307068 1 NC_007929.1 COG0344 [S] Predicted membrane protein; cell wall teichoic acid glycosylation protein gtcA 1307068 3976472 LSL_1271 Lactobacillus salivarius UCC118 cell wall teichoic acid glycosylation protein gtcA YP_536161.1 1306658 D 364254 CDS YP_536162.1 90962246 3976609 1307159..1310017 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1310017 3976609 LSL_1272 Lactobacillus salivarius UCC118 hypothetical protein YP_536162.1 1307159 D 364254 CDS YP_536163.1 90962247 3976610 complement(1310074..1311060) 1 NC_007929.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 1311060 3976610 LSL_1273 Lactobacillus salivarius UCC118 ornithine cyclodeaminase YP_536163.1 1310074 R 364254 CDS YP_536164.1 90962248 3976611 complement(1311074..1311940) 1 NC_007929.1 hypothetical protein 1311940 3976611 LSL_1274 Lactobacillus salivarius UCC118 hypothetical protein YP_536164.1 1311074 R 364254 CDS YP_536165.1 90962249 3976612 complement(1311958..1312752) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; transcriptional regulator 1312752 3976612 LSL_1275 Lactobacillus salivarius UCC118 transcriptional regulator YP_536165.1 1311958 R 364254 CDS YP_536166.1 90962250 3976613 complement(1312925..1314073) 1 NC_007929.1 COG0381 [M] UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 1314073 wecB 3976613 wecB Lactobacillus salivarius UCC118 UDP-N-acetylglucosamine 2-epimerase YP_536166.1 1312925 R 364254 CDS YP_536167.1 90962251 3976614 1314193..1315377 1 NC_007929.1 COG2309 [E] Leucyl aminopeptidase (aminopeptidase T); aminopeptidase S 1315377 ampS 3976614 ampS Lactobacillus salivarius UCC118 aminopeptidase S YP_536167.1 1314193 D 364254 CDS YP_536168.1 90962252 3976615 1315689..1317296 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1317296 3976615 LSL_1278 Lactobacillus salivarius UCC118 amino acid permease YP_536168.1 1315689 D 364254 CDS YP_536169.1 90962253 3976616 complement(1317408..1318079) 1 NC_007929.1 COG0637 [R] Predicted phosphatase/phosphohexomutase; beta-phosphoglucomutase / glucose-1-phosphate phosphodismutase 1318079 3976616 LSL_1279 Lactobacillus salivarius UCC118 beta-phosphoglucomutase / glucose-1-phosphate phosphodismutase YP_536169.1 1317408 R 364254 CDS YP_536170.1 90962254 3976617 complement(1318089..1320353) 1 NC_007929.1 COG1554 [G] Trehalose and maltose hydrolases (possible phosphorylases); maltose phosphorylase 1320353 mapA 3976617 mapA Lactobacillus salivarius UCC118 maltose phosphorylase YP_536170.1 1318089 R 364254 CDS YP_536171.1 90962255 3976618 complement(1320368..1321360) 1 NC_007929.1 COG2017 [G] Galactose mutarotase and related enzymes; aldose 1-epimerase 1321360 galM 3976618 galM Lactobacillus salivarius UCC118 aldose 1-epimerase YP_536171.1 1320368 R 364254 CDS YP_536172.1 90962256 3976619 complement(1321364..1322719) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; sugar transporter 1322719 3976619 LSL_1282 Lactobacillus salivarius UCC118 sugar transporter YP_536172.1 1321364 R 364254 CDS YP_536173.1 90962257 3976620 complement(1322875..1323870) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; maltose operon transcriptional repressor 1323870 malR 3976620 malR Lactobacillus salivarius UCC118 maltose operon transcriptional repressor YP_536173.1 1322875 R 364254 CDS YP_536174.1 90962258 3976621 complement(1324010..1326034) 1 NC_007929.1 COG3158 [P] K+ transporter; Kup system potassium uptake protein 1326034 kup 3976621 kup Lactobacillus salivarius UCC118 Kup system potassium uptake protein YP_536174.1 1324010 R 364254 CDS YP_536175.1 90962259 3976623 complement(1326293..1326706) 1 NC_007929.1 hypothetical protein 1326706 3976623 LSL_1285 Lactobacillus salivarius UCC118 hypothetical protein YP_536175.1 1326293 R 364254 CDS YP_536176.1 90962260 3976624 complement(1326739..1328019) 1 NC_007929.1 COG0513 [LKJ] Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 1328019 srmB 3976624 srmB Lactobacillus salivarius UCC118 ATP-dependent RNA helicase YP_536176.1 1326739 R 364254 CDS YP_536177.1 90962261 3976625 complement(1328038..1329048) 1 NC_007929.1 COG0673 [R] Predicted dehydrogenases and related proteins; oxidoreductase 1329048 3976625 LSL_1287 Lactobacillus salivarius UCC118 oxidoreductase YP_536177.1 1328038 R 364254 CDS YP_536178.1 90962262 3976626 1329287..1329646 1 NC_007929.1 hypothetical protein 1329646 3976626 LSL_1288 Lactobacillus salivarius UCC118 hypothetical protein YP_536178.1 1329287 D 364254 CDS YP_536179.1 90962263 3976627 complement(1329755..1331578) 1 NC_007929.1 COG0366 [G] Glycosidases; alpha-amylase 1331578 amyA 3976627 amyA Lactobacillus salivarius UCC118 alpha-amylase YP_536179.1 1329755 R 364254 CDS YP_536180.1 90962264 3976542 complement(1331559..1333982) 1 NC_007929.1 COG0058 [G] Glucan phosphorylase; glycogen phosphorylase 1333982 glgP 3976542 glgP Lactobacillus salivarius UCC118 glycogen phosphorylase YP_536180.1 1331559 R 364254 CDS YP_536181.1 90962265 3976543 complement(1334011..1335441) 1 NC_007929.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1335441 glgA 3976543 glgA Lactobacillus salivarius UCC118 glycogen synthase YP_536181.1 1334011 R 364254 CDS YP_536182.1 90962266 3976544 complement(1335441..1336613) 1 NC_007929.1 COG0448 [G] ADP-glucose pyrophosphorylase; glucose-1-phosphate adenylyltransferase regulatory subunit 1336613 glgC 3976544 glgC Lactobacillus salivarius UCC118 glucose-1-phosphate adenylyltransferase regulatory subunit YP_536182.1 1335441 R 364254 CDS YP_536183.1 90962267 3976545 complement(1336603..1337745) 1 NC_007929.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1337745 glgC 3976545 glgC Lactobacillus salivarius UCC118 glucose-1-phosphate adenylyltransferase YP_536183.1 1336603 R 364254 CDS YP_536184.1 90962268 3976546 complement(1337847..1339796) 1 NC_007929.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1339796 glgB 3976546 glgB Lactobacillus salivarius UCC118 glycogen branching enzyme YP_536184.1 1337847 R 364254 CDS YP_536185.1 90962269 3976547 complement(1340001..1341764) 1 NC_007929.1 COG0366 [G] Glycosidases; neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase 1341764 3976547 LSL_1295 Lactobacillus salivarius UCC118 neopullulanase / cyclomaltodextrinase / maltogenic alpha-amylase YP_536185.1 1340001 R 364254 CDS YP_536186.1 90962270 3976548 complement(1341804..1342847) 1 NC_007929.1 hypothetical protein 1342847 3976548 LSL_1296 Lactobacillus salivarius UCC118 hypothetical protein YP_536186.1 1341804 R 364254 CDS YP_536187.1 90962271 3976549 complement(1342998..1344332) 1 NC_007929.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1344332 gdhA 3976549 gdhA Lactobacillus salivarius UCC118 glutamate dehydrogenase YP_536187.1 1342998 R 364254 CDS YP_536188.1 90962272 3976550 complement(1344519..1345892) 1 NC_007929.1 COG1012 [C] NAD-dependent aldehyde dehydrogenases; succinate-semialdehyde dehydrogenase [NADP+] 1345892 3976550 LSL_1298 Lactobacillus salivarius UCC118 succinate-semialdehyde dehydrogenase [NADP+] YP_536188.1 1344519 R 364254 CDS YP_536189.1 90962273 3976551 complement(1346071..1346553) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 1346553 wecD 3976551 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536189.1 1346071 R 364254 CDS YP_536190.1 90962274 3976552 complement(1346571..1346885) 1 NC_007929.1 hypothetical protein 1346885 3976552 LSL_1300 Lactobacillus salivarius UCC118 hypothetical protein YP_536190.1 1346571 R 364254 CDS YP_536191.1 90962275 3976553 complement(1347518..1348807) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1348807 3976553 LSL_1301 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536191.1 1347518 R 364254 CDS YP_536192.1 90962276 3976554 complement(1348992..1350359) 1 NC_007929.1 COG2239 [P] Mg/Co/Ni transporter MgtE (contains CBS domain); Mg2+ transporter 1350359 mgtE 3976554 mgtE Lactobacillus salivarius UCC118 Mg2+ transporter YP_536192.1 1348992 R 364254 CDS YP_536193.1 90962277 3976555 complement(1350377..1351264) 1 NC_007929.1 COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 1351264 rluD 3976555 rluD Lactobacillus salivarius UCC118 ribosomal large subunit pseudouridine synthase D YP_536193.1 1350377 R 364254 CDS YP_536194.1 90962278 3976556 complement(1351254..1352060) 1 NC_007929.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1352060 ppnK 3976556 ppnK Lactobacillus salivarius UCC118 inorganic polyphosphate/ATP-NAD kinase YP_536194.1 1351254 R 364254 CDS YP_536195.1 90962279 3976557 complement(1352081..1352725) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; GTP pyrophosphokinase 1352725 3976557 LSL_1305 Lactobacillus salivarius UCC118 GTP pyrophosphokinase YP_536195.1 1352081 R 364254 CDS YP_536196.1 90962280 3976558 complement(1352826..1354901) 1 NC_007929.1 COG0550 [L] Topoisomerase IA; DNA topoisomerase III 1354901 topB 3976558 topB Lactobacillus salivarius UCC118 DNA topoisomerase III YP_536196.1 1352826 R 364254 CDS YP_536197.1 90962281 3976559 1354976..1355512 1 NC_007929.1 COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase 1355512 wecD 3976559 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536197.1 1354976 D 364254 CDS YP_536198.1 90962282 3976560 complement(1355556..1356890) 1 NC_007929.1 COG2233 [F] Xanthine/uracil permeases; xanthine permease 1356890 3976560 LSL_1308 Lactobacillus salivarius UCC118 xanthine permease YP_536198.1 1355556 R 364254 CDS YP_536199.1 90962283 3977665 complement(1356893..1357471) 1 NC_007929.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1357471 xpt 3977665 xpt Lactobacillus salivarius UCC118 xanthine phosphoribosyltransferase YP_536199.1 1356893 R 364254 CDS YP_536200.1 90962284 3977666 complement(1357680..1358336) 1 NC_007929.1 COG1705 [NU] Muramidase (flagellum-specific); muramidase 1358336 3977666 LSL_1310 Lactobacillus salivarius UCC118 muramidase YP_536200.1 1357680 R 364254 CDS YP_536201.1 90962285 3977667 complement(1358369..1358965) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1358965 3977667 LSL_1311 Lactobacillus salivarius UCC118 hypothetical protein YP_536201.1 1358369 R 364254 CDS YP_536202.1 90962286 3977668 complement(1359107..1360075) 1 NC_007929.1 COG0679 [R] Predicted permeases; malate permease 1360075 3977668 LSL_1312 Lactobacillus salivarius UCC118 malate permease YP_536202.1 1359107 R 364254 CDS YP_536203.1 90962287 3977669 complement(1360119..1361744) 1 NC_007929.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1361744 3977669 LSL_1313 Lactobacillus salivarius UCC118 malate dehydrogenase YP_536203.1 1360119 R 364254 CDS YP_536204.1 90962288 3977670 1361886..1362767 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 1362767 3977670 LSL_1314 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_536204.1 1361886 D 364254 CDS YP_536205.1 90962289 3977671 complement(1362833..1363267) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; MarR family transcriptional regulator 1363267 3977671 LSL_1315 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_536205.1 1362833 R 364254 CDS YP_536206.1 90962290 3977672 complement(1363609..1364142) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 1364142 3977672 LSL_1316 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_536206.1 1363609 R 364254 CDS YP_536207.1 90962291 3977673 complement(1364171..1364614) 1 NC_007929.1 COG0589 [T] Universal stress protein UspA and related nucleotide-binding proteins; universal stress protein 1364614 3977673 LSL_1317 Lactobacillus salivarius UCC118 universal stress protein YP_536207.1 1364171 R 364254 CDS YP_536208.1 90962292 3977674 complement(1364738..1365184) 1 NC_007929.1 COG1395 [K] Predicted transcriptional regulator; CopAB ATPases metal-fist type repressor 1365184 3977674 LSL_1318 Lactobacillus salivarius UCC118 CopAB ATPases metal-fist type repressor YP_536208.1 1364738 R 364254 CDS YP_536209.1 90962293 3977676 1369336..1370541 1 NC_007929.1 COG4086 [S] Predicted secreted protein; hypothetical protein 1370541 3977676 LSL_1321 Lactobacillus salivarius UCC118 hypothetical protein YP_536209.1 1369336 D 364254 CDS YP_536210.1 90962294 3977677 1370553..1371161 1 NC_007929.1 COG0586 [S] Uncharacterized membrane-associated protein; alkaline phosphatase 1371161 3977677 LSL_1322 Lactobacillus salivarius UCC118 alkaline phosphatase YP_536210.1 1370553 D 364254 CDS YP_536211.1 90962295 3977678 complement(1371226..1372422) 1 NC_007929.1 COG0282 [C] Acetate kinase; acetate kinase 1372422 ackA 3977678 ackA Lactobacillus salivarius UCC118 acetate kinase YP_536211.1 1371226 R 364254 CDS YP_536212.1 90962296 3977679 complement(1372504..1373073) 1 NC_007929.1 COG0110 [R] acetyltransferase (isoleucine patch superfamily); acetyltransferase 1373073 wecD 3977679 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536212.1 1372504 R 364254 CDS YP_536213.1 90962297 3977680 complement(1373179..1374600) 1 NC_007929.1 COG0471 [P] Di- and tricarboxylate transporters; 2-oxoglutarate/malate translocator 1374600 3977680 LSL_1325 Lactobacillus salivarius UCC118 2-oxoglutarate/malate translocator YP_536213.1 1373179 R 364254 CDS YP_536214.1 90962298 3977681 complement(1374693..1376078) 1 NC_007929.1 COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 1376078 frdA 3977681 frdA Lactobacillus salivarius UCC118 fumarate reductase flavoprotein subunit YP_536214.1 1374693 R 364254 CDS YP_536215.1 90962299 3977682 complement(1376098..1377480) 1 NC_007929.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1377480 fumC 3977682 fumC Lactobacillus salivarius UCC118 fumarate hydratase YP_536215.1 1376098 R 364254 CDS YP_536216.1 90962300 3977683 1377774..1378067 1 NC_007929.1 hypothetical protein 1378067 3977683 LSL_1328 Lactobacillus salivarius UCC118 hypothetical protein YP_536216.1 1377774 D 364254 CDS YP_536217.1 90962301 3976561 complement(1378126..1379460) 1 NC_007929.1 COG1249 [C] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes; pyridine nucleotide-disulphide oxidoreductase family protein 1379460 3976561 LSL_1329 Lactobacillus salivarius UCC118 pyridine nucleotide-disulphide oxidoreductase family protein YP_536217.1 1378126 R 364254 CDS YP_536218.1 90962302 3976562 complement(1379617..1380015) 1 NC_007929.1 COG1393 [P] Arsenate reductase and related proteins, glutaredoxin family; arsenate reductase 1380015 arsC 3976562 arsC Lactobacillus salivarius UCC118 arsenate reductase YP_536218.1 1379617 R 364254 CDS YP_536219.1 90962303 3976563 complement(1380243..1380923) 1 NC_007929.1 COG0602 [O] Organic radical activating enzymes; anaerobic ribonucleoside-triphosphate reductase activating protein 1380923 nrdG 3976563 nrdG Lactobacillus salivarius UCC118 anaerobic ribonucleoside-triphosphate reductase activating protein YP_536219.1 1380243 R 364254 CDS YP_536220.1 90962304 3976564 complement(1380913..1383090) 1 NC_007929.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1383090 nrdD 3976564 nrdD Lactobacillus salivarius UCC118 anaerobic ribonucleoside triphosphate reductase YP_536220.1 1380913 R 364254 CDS YP_536221.1 90962305 3976565 1383272..1383829 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1383829 3976565 LSL_1333 Lactobacillus salivarius UCC118 hypothetical protein YP_536221.1 1383272 D 364254 CDS YP_536222.1 90962306 3976566 complement(1384398..1385021) 1 NC_007929.1 COG2388 [R] Predicted acetyltransferase; acetyltransferase 1385021 wecD 3976566 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536222.1 1384398 R 364254 CDS YP_536223.1 90962307 3976567 complement(1385213..1387570) 1 NC_007929.1 mucus binding protein 1387570 mbp3 3976567 mbp3 Lactobacillus salivarius UCC118 mucus binding protein YP_536223.1 1385213 R 364254 CDS YP_536224.1 90962308 3976568 complement(1387947..1388315) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 1388315 wecD 3976568 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536224.1 1387947 R 364254 CDS YP_536225.1 90962309 3976569 complement(1388411..1388554) 1 NC_007929.1 hypothetical protein 1388554 3976569 LSL_1337 Lactobacillus salivarius UCC118 hypothetical protein YP_536225.1 1388411 R 364254 CDS YP_536226.1 90962310 3976570 complement(1388643..1389254) 1 NC_007929.1 DNA-binding protein 1389254 3976570 LSL_1338 Lactobacillus salivarius UCC118 DNA-binding protein YP_536226.1 1388643 R 364254 CDS YP_536227.1 90962311 3976571 complement(1389800..1390894) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1390894 3976571 LSL_1339 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536227.1 1389800 R 364254 CDS YP_536228.1 90962312 3976572 complement(1391274..1392290) 1 NC_007929.1 hypothetical protein 1392290 3976572 LSL_1340 Lactobacillus salivarius UCC118 hypothetical protein YP_536228.1 1391274 R 364254 CDS YP_536229.1 90962313 3976573 complement(1392529..1393908) 1 NC_007929.1 COG2265 [J] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; tRNA (Uracil-5-) -methyltransferase 1393908 trmA 3976573 trmA Lactobacillus salivarius UCC118 tRNA (Uracil-5-) -methyltransferase YP_536229.1 1392529 R 364254 CDS YP_536230.1 90962314 3976574 1394078..1395367 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1395367 3976574 LSL_1342 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536230.1 1394078 D 364254 CDS YP_536231.1 90962315 3976575 complement(1395504..1396523) 1 NC_007929.1 similar to YegS from E. coli; lipid kinase 1396523 3976575 LSL_1343 Lactobacillus salivarius UCC118 lipid kinase YP_536231.1 1395504 R 364254 CDS YP_536232.1 90962316 3976576 complement(1396556..1397989) 1 NC_007929.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1397989 gatB 3976576 gatB Lactobacillus salivarius UCC118 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_536232.1 1396556 R 364254 CDS YP_536233.1 90962317 3976577 complement(1397989..1399452) 1 NC_007929.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1399452 gatA 3976577 gatA Lactobacillus salivarius UCC118 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_536233.1 1397989 R 364254 CDS YP_536234.1 90962318 3976578 complement(1399455..1399754) 1 NC_007929.1 COG0721 [J] Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 1399754 gatC 3976578 gatC Lactobacillus salivarius UCC118 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_536234.1 1399455 R 364254 CDS YP_536235.1 90962319 3976579 complement(1399906..1401051) 1 NC_007929.1 COG4851 [R] Protein involved in sex pheromone biosynthesis; lipoprotein, pheromone precursor 1401051 3976579 LSL_1347 Lactobacillus salivarius UCC118 lipoprotein, pheromone precursor YP_536235.1 1399906 R 364254 CDS YP_536236.1 90962320 3976580 complement(1401048..1403066) 1 NC_007929.1 COG0272 [L] NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase 1403066 lig 3976580 lig Lactobacillus salivarius UCC118 NAD-dependent DNA ligase YP_536236.1 1401048 R 364254 CDS YP_536237.1 90962321 3977153 complement(1403083..1405317) 1 NC_007929.1 COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase 1405317 pcrA 3977153 pcrA Lactobacillus salivarius UCC118 ATP-dependent DNA helicase YP_536237.1 1403083 R 364254 CDS YP_536238.1 90962322 3977154 complement(1405425..1406564) 1 NC_007929.1 COG0026 [F] Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase); phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit 1406564 purK 3977154 purK Lactobacillus salivarius UCC118 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit YP_536238.1 1405425 R 364254 CDS YP_536239.1 90962323 3977161 complement(1412321..1413808) 1 NC_007929.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1413808 lysS 3977161 lysS Lactobacillus salivarius UCC118 lysyl-tRNA synthetase YP_536239.1 1412321 R 364254 CDS YP_536240.1 90962324 3977162 complement(1413902..1414894) 1 NC_007929.1 COG0042 [J] tRNA-dihydrouridine synthase; tRNA-dihydrouridine synthase 1414894 3977162 LSL_1352 Lactobacillus salivarius UCC118 tRNA-dihydrouridine synthase YP_536240.1 1413902 R 364254 CDS YP_536241.1 90962325 3977164 complement(1415935..1418013) 1 NC_007929.1 COG0465 [O] ATP-dependent Zn proteases; cell division protein 1418013 ftsH 3977164 ftsH Lactobacillus salivarius UCC118 cell division protein YP_536241.1 1415935 R 364254 CDS YP_536242.1 90962326 3977495 complement(1418154..1418693) 1 NC_007929.1 COG0634 [F] Hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase 1418693 hpt 3977495 hpt Lactobacillus salivarius UCC118 hypoxanthine-guanine phosphoribosyltransferase YP_536242.1 1418154 R 364254 CDS YP_536243.1 90962327 3977496 complement(1418710..1420068) 1 NC_007929.1 COG0037 [D] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase TilS 1420068 3977496 LSL_1355 Lactobacillus salivarius UCC118 tRNA(Ile)-lysidine synthase TilS YP_536243.1 1418710 R 364254 CDS YP_536244.1 90962328 3977497 complement(1420126..1420590) 1 NC_007929.1 COG1098 [J] Predicted RNA binding protein (contains ribosomal protein S1 domain); hypothetical protein 1420590 3977497 LSL_1356 Lactobacillus salivarius UCC118 hypothetical protein YP_536244.1 1420126 R 364254 CDS YP_536245.1 90962329 3977498 complement(1420679..1421074) 1 NC_007929.1 COG2919 [D] Septum formation initiator; cell division protein DIVIC 1421074 3977498 LSL_1357 Lactobacillus salivarius UCC118 cell division protein DIVIC YP_536245.1 1420679 R 364254 CDS YP_536246.1 90962330 3977499 complement(1421113..1421382) 1 NC_007929.1 COG1188 [J] Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); heat shock protein 15 1421382 3977499 LSL_1358 Lactobacillus salivarius UCC118 heat shock protein 15 YP_536246.1 1421113 R 364254 CDS YP_536247.1 90962331 3977500 complement(1421382..1422959) 1 NC_007929.1 COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; polysaccharides export protein 1422959 3977500 LSL_1359 Lactobacillus salivarius UCC118 polysaccharides export protein YP_536247.1 1421382 R 364254 CDS YP_536248.1 90962332 3977501 complement(1422969..1426493) 1 NC_007929.1 COG1197 [LK] Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 1426493 mfd 3977501 mfd Lactobacillus salivarius UCC118 transcription-repair coupling factor YP_536248.1 1422969 R 364254 CDS YP_536249.1 90962333 3977502 complement(1426515..1427072) 1 NC_007929.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1427072 pth 3977502 pth Lactobacillus salivarius UCC118 peptidyl-tRNA hydrolase YP_536249.1 1426515 R 364254 CDS YP_536250.1 90962334 3977503 1427321..1428289 1 NC_007929.1 COG0039 [C] Malate/lactate dehydrogenases; L-lactate dehydrogenase 1428289 ldh 3977503 ldh Lactobacillus salivarius UCC118 L-lactate dehydrogenase YP_536250.1 1427321 D 364254 CDS YP_536251.1 90962335 3977504 complement(1428614..1430887) 1 NC_007929.1 COG1787 [V] Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; hypothetical protein 1430887 3977504 LSL_1363 Lactobacillus salivarius UCC118 hypothetical protein YP_536251.1 1428614 R 364254 CDS YP_536252.1 90962336 3977505 1431056..1431694 1 NC_007929.1 COG0517 [R] FOG: CBS domain; hypothetical protein 1431694 3977505 LSL_1364 Lactobacillus salivarius UCC118 hypothetical protein YP_536252.1 1431056 D 364254 CDS YP_536253.1 90962337 3977506 1432112..1433074 1 NC_007929.1 COG1893 [H] Ketopantoate reductase; 2-dehydropantoate 2-reductase 1433074 apbA 3977506 apbA Lactobacillus salivarius UCC118 2-dehydropantoate 2-reductase YP_536253.1 1432112 D 364254 CDS YP_536254.1 90962338 3977507 complement(1433144..1434394) 1 NC_007929.1 COG0162 [J] Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 1434394 tyrS 3977507 tyrS Lactobacillus salivarius UCC118 tyrosyl-tRNA synthetase YP_536254.1 1433144 R 364254 CDS YP_536255.1 90962339 3977508 complement(1434677..1435120) 1 NC_007929.1 COG0735 [P] Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein 1435120 fur 3977508 fur Lactobacillus salivarius UCC118 ferric uptake regulation protein YP_536255.1 1434677 R 364254 CDS YP_536256.1 90962340 3977509 complement(1435222..1435809) 1 NC_007929.1 COG1988 [R] Predicted membrane-bound metal-dependent hydrolases; hypothetical protein 1435809 3977509 LSL_1368 Lactobacillus salivarius UCC118 hypothetical protein YP_536256.1 1435222 R 364254 CDS YP_536257.1 90962341 3977510 complement(1435837..1438938) 1 NC_007929.1 COG0419 [L] ATPase involved in DNA repair; exonuclease 1438938 sbcC 3977510 sbcC Lactobacillus salivarius UCC118 exonuclease YP_536257.1 1435837 R 364254 CDS YP_536258.1 90962342 3977511 complement(1438935..1440050) 1 NC_007929.1 COG0420 [L] DNA repair exonuclease; exonuclease 1440050 sbcD 3977511 sbcD Lactobacillus salivarius UCC118 exonuclease YP_536258.1 1438935 R 364254 CDS YP_536259.1 90962343 3977512 1440534..1441103 1 NC_007929.1 peptidoglycan binding protein 1441103 3977512 LSL_1371 Lactobacillus salivarius UCC118 peptidoglycan binding protein YP_536259.1 1440534 D 364254 CDS YP_536260.1 90962344 3977513 complement(1441277..1443085) 1 NC_007929.1 COG0028 [EH] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]; pyruvate oxidase 1443085 3977513 LSL_1372 Lactobacillus salivarius UCC118 pyruvate oxidase YP_536260.1 1441277 R 364254 CDS YP_536261.1 90962345 3977514 complement(1443201..1443764) 1 NC_007929.1 COG2173 [M] D-alanyl-D-alanine dipeptidase; D-alanyl-D-alanine dipeptidase 1443764 ddpX 3977514 ddpX Lactobacillus salivarius UCC118 D-alanyl-D-alanine dipeptidase YP_536261.1 1443201 R 364254 CDS YP_536262.1 90962346 3976667 1444456..1445517 1 NC_007929.1 COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 1445517 3976667 LSL_1374 Lactobacillus salivarius UCC118 ABC transporter permease YP_536262.1 1444456 D 364254 CDS YP_536263.1 90962347 3976668 1445521..1446195 1 NC_007929.1 COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 1446195 3976668 LSL_1375 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536263.1 1445521 D 364254 CDS YP_536264.1 90962348 3976669 1446294..1447052 1 NC_007929.1 COG0778 [C] Nitroreductase; nitro/flavin reductase 1447052 3976669 LSL_1376 Lactobacillus salivarius UCC118 nitro/flavin reductase YP_536264.1 1446294 D 364254 CDS YP_536265.1 90962349 3976670 complement(1447108..1449399) 1 NC_007929.1 COG0210 [L] Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase 1449399 rep 3976670 rep Lactobacillus salivarius UCC118 ATP-dependent DNA helicase YP_536265.1 1447108 R 364254 CDS YP_536266.1 90962350 3976671 1449684..1451540 1 NC_007929.1 COG0475 [P] Kef-type K+ transport systems, membrane components; Na+/H+ antiporter 1451540 napA 3976671 napA Lactobacillus salivarius UCC118 Na+/H+ antiporter YP_536266.1 1449684 D 364254 CDS YP_536267.1 90962351 3976672 complement(1451639..1452193) 1 NC_007929.1 hypothetical protein 1452193 3976672 LSL_1379 Lactobacillus salivarius UCC118 hypothetical protein YP_536267.1 1451639 R 364254 CDS YP_536268.1 90962352 3976674 1454149..1455438 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1455438 3976674 LSL_1381 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536268.1 1454149 D 364254 CDS YP_536269.1 90962353 3976675 complement(1455983..1456711) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1456711 3976675 LSL_1382 Lactobacillus salivarius UCC118 hypothetical protein YP_536269.1 1455983 R 364254 CDS YP_536270.1 90962354 3976676 complement(1456708..1457448) 1 NC_007929.1 ABC transporter 1457448 3976676 LSL_1383 Lactobacillus salivarius UCC118 ABC transporter YP_536270.1 1456708 R 364254 CDS YP_536271.1 90962355 3976677 complement(1457448..1458356) 1 NC_007929.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 1458356 3976677 LSL_1384 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536271.1 1457448 R 364254 CDS YP_536272.1 90962356 3976678 1458528..1458731 1 NC_007929.1 response regulator receiver 1458731 3976678 LSL_1385 Lactobacillus salivarius UCC118 response regulator receiver YP_536272.1 1458528 D 364254 CDS YP_536273.1 90962357 3976679 complement(1458780..1460069) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1460069 3976679 LSL_1386 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536273.1 1458780 R 364254 CDS YP_536274.1 90962358 3976680 complement(1460314..1460877) 1 NC_007929.1 COG2020 [O] protein-S-isoprenylcysteine methyltransferase; hypothetical protein 1460877 3976680 LSL_1387 Lactobacillus salivarius UCC118 hypothetical protein YP_536274.1 1460314 R 364254 CDS YP_536275.1 90962359 3976682 complement(1461649..1462020) 1 NC_007929.1 COG3654 [R] Prophage maintenance system killer protein; death on curing protein 1462020 doc 3976682 doc Lactobacillus salivarius UCC118 death on curing protein YP_536275.1 1461649 R 364254 CDS YP_536276.1 90962360 3977723 complement(1462017..1462274) 1 NC_007929.1 hypothetical protein 1462274 3977723 LSL_1389 Lactobacillus salivarius UCC118 hypothetical protein YP_536276.1 1462017 R 364254 CDS YP_536277.1 90962361 3977724 complement(1463295..1463855) 1 NC_007929.1 hypothetical protein 1463855 3977724 LSL_1390 Lactobacillus salivarius UCC118 hypothetical protein YP_536277.1 1463295 R 364254 CDS YP_536278.1 90962362 3977725 complement(1464041..1465186) 1 NC_007929.1 hypothetical protein 1465186 3977725 LSL_1391 Lactobacillus salivarius UCC118 hypothetical protein YP_536278.1 1464041 R 364254 CDS YP_536279.1 90962363 3977726 complement(1465187..1465660) 1 NC_007929.1 hypothetical protein 1465660 3977726 LSL_1392 Lactobacillus salivarius UCC118 hypothetical protein YP_536279.1 1465187 R 364254 CDS YP_536280.1 90962364 3977727 complement(1465644..1466138) 1 NC_007929.1 hypothetical protein 1466138 3977727 LSL_1393 Lactobacillus salivarius UCC118 hypothetical protein YP_536280.1 1465644 R 364254 CDS YP_536281.1 90962365 3977728 complement(1466196..1466624) 1 NC_007929.1 hypothetical protein 1466624 3977728 LSL_1394 Lactobacillus salivarius UCC118 hypothetical protein YP_536281.1 1466196 R 364254 CDS YP_536282.1 90962366 3977729 complement(1466726..1466893) 1 NC_007929.1 hypothetical protein 1466893 3977729 LSL_1395 Lactobacillus salivarius UCC118 hypothetical protein YP_536282.1 1466726 R 364254 CDS YP_536283.1 90962367 3977730 complement(1466969..1467079) 1 NC_007929.1 hypothetical protein 1467079 3977730 LSL_1396 Lactobacillus salivarius UCC118 hypothetical protein YP_536283.1 1466969 R 364254 CDS YP_536284.1 90962368 3977732 complement(1468364..1469218) 1 NC_007929.1 COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); dehydrogenase 1469218 3977732 LSL_1397 Lactobacillus salivarius UCC118 dehydrogenase YP_536284.1 1468364 R 364254 CDS YP_536285.1 90962369 3977733 complement(1469230..1469799) 1 NC_007929.1 COG1658 [L] Small primase-like proteins (Toprim domain); ribonuclease M5 1469799 3977733 LSL_1398 Lactobacillus salivarius UCC118 ribonuclease M5 YP_536285.1 1469230 R 364254 CDS YP_536286.1 90962370 3977734 complement(1469814..1470062) 1 NC_007929.1 hypothetical protein 1470062 3977734 LSL_1399 Lactobacillus salivarius UCC118 hypothetical protein YP_536286.1 1469814 R 364254 CDS YP_536287.1 90962371 3977736 complement(1471089..1471232) 1 NC_007929.1 hypothetical protein 1471232 3977736 LSL_1400 Lactobacillus salivarius UCC118 hypothetical protein YP_536287.1 1471089 R 364254 CDS YP_536288.1 90962372 3977737 complement(1471249..1471695) 1 NC_007929.1 hypothetical protein 1471695 3977737 LSL_1401 Lactobacillus salivarius UCC118 hypothetical protein YP_536288.1 1471249 R 364254 CDS YP_536289.1 90962373 3977739 complement(1477906..1478298) 1 NC_007929.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1478298 rpsI 3977739 rpsI Lactobacillus salivarius UCC118 30S ribosomal protein S9 YP_536289.1 1477906 R 364254 CDS YP_536290.1 90962374 3977704 complement(1478312..1478755) 1 NC_007929.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1478755 rplM 3977704 rplM Lactobacillus salivarius UCC118 50S ribosomal protein L13 YP_536290.1 1478312 R 364254 CDS YP_536291.1 90962375 3977705 complement(1478890..1479660) 1 NC_007929.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1479660 truA 3977705 truA Lactobacillus salivarius UCC118 tRNA pseudouridine synthase A YP_536291.1 1478890 R 364254 CDS YP_536292.1 90962376 3977706 complement(1479676..1480470) 1 NC_007929.1 COG0619 [P] ABC-type cobalt transport system, permease component CbiQ and related transporters; cobalt transport permease 1480470 cbiQ 3977706 cbiQ Lactobacillus salivarius UCC118 cobalt transport permease YP_536292.1 1479676 R 364254 CDS YP_536293.1 90962377 3977707 complement(1480463..1481332) 1 NC_007929.1 COG1122 [P] ABC-type cobalt transport system, ATPase component; cobalt transport ATP-binding protein 1481332 cbiO 3977707 cbiO Lactobacillus salivarius UCC118 cobalt transport ATP-binding protein YP_536293.1 1480463 R 364254 CDS YP_536294.1 90962378 3977708 complement(1481308..1482156) 1 NC_007929.1 COG1122 [P] ABC-type cobalt transport system, ATPase component; cobalt transport ATP-binding protein 1482156 cbiO 3977708 cbiO Lactobacillus salivarius UCC118 cobalt transport ATP-binding protein YP_536294.1 1481308 R 364254 CDS YP_536295.1 90962379 3977709 complement(1482471..1482854) 1 NC_007929.1 COG0203 [J] Ribosomal protein L17; 50S ribosomal protein L17P 1482854 rplQ 3977709 rplQ Lactobacillus salivarius UCC118 50S ribosomal protein L17P YP_536295.1 1482471 R 364254 CDS YP_536296.1 90962380 3977710 complement(1482888..1483832) 1 NC_007929.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1483832 rpoA 3977710 rpoA Lactobacillus salivarius UCC118 DNA-directed RNA polymerase subunit alpha YP_536296.1 1482888 R 364254 CDS YP_536297.1 90962381 3977711 complement(1483917..1484303) 1 NC_007929.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1484303 rpsK 3977711 rpsK Lactobacillus salivarius UCC118 30S ribosomal protein S11 YP_536297.1 1483917 R 364254 CDS YP_536298.1 90962382 3977712 complement(1484331..1484696) 1 NC_007929.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1484696 rpsM 3977712 rpsM Lactobacillus salivarius UCC118 30S ribosomal protein S13 YP_536298.1 1484331 R 364254 CDS YP_536299.1 90962383 3977713 complement(1484722..1484835) 1 NC_007929.1 COG0257 [J] Ribosomal protein L36; 50S ribosomal protein L36P 1484835 rpmJ 3977713 rpmJ Lactobacillus salivarius UCC118 50S ribosomal protein L36P YP_536299.1 1484722 R 364254 CDS YP_536300.1 90962384 3977714 complement(1484871..1485089) 1 NC_007929.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1485089 infA 3977714 infA Lactobacillus salivarius UCC118 translation initiation factor IF-1 YP_536300.1 1484871 R 364254 CDS YP_536301.1 90962385 3977715 complement(1485304..1485963) 1 NC_007929.1 COG0563 [F] Adenylate kinase and related kinases; adenylate kinase / nucleoside-diphosphate kinase 1485963 adk 3977715 adk Lactobacillus salivarius UCC118 adenylate kinase / nucleoside-diphosphate kinase YP_536301.1 1485304 R 364254 CDS YP_536302.1 90962386 3977716 complement(1486063..1487361) 1 NC_007929.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1487361 secY 3977716 secY Lactobacillus salivarius UCC118 preprotein translocase subunit SecY YP_536302.1 1486063 R 364254 CDS YP_536303.1 90962387 3977717 complement(1487364..1487798) 1 NC_007929.1 COG0200 [J] Ribosomal protein L15; 50S ribosomal protein L15P 1487798 rplO 3977717 rplO Lactobacillus salivarius UCC118 50S ribosomal protein L15P YP_536303.1 1487364 R 364254 CDS YP_536304.1 90962388 3977718 complement(1487834..1488016) 1 NC_007929.1 COG1841 [J] Ribosomal protein L30/L7E; 50S ribosomal protein L30P 1488016 rpmD 3977718 rpmD Lactobacillus salivarius UCC118 50S ribosomal protein L30P YP_536304.1 1487834 R 364254 CDS YP_536305.1 90962389 3977719 complement(1488030..1488530) 1 NC_007929.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1488530 rpsE 3977719 rpsE Lactobacillus salivarius UCC118 30S ribosomal protein S5 YP_536305.1 1488030 R 364254 CDS YP_536306.1 90962390 3977720 complement(1488552..1488908) 1 NC_007929.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1488908 rplR 3977720 rplR Lactobacillus salivarius UCC118 50S ribosomal protein L18 YP_536306.1 1488552 R 364254 CDS YP_536307.1 90962391 3977721 complement(1488953..1489489) 1 NC_007929.1 COG0097 [J] Ribosomal protein L6P/L9E; 50S ribosomal protein L6P 1489489 rplF 3977721 rplF Lactobacillus salivarius UCC118 50S ribosomal protein L6P YP_536307.1 1488953 R 364254 CDS YP_536308.1 90962392 3977722 complement(1489522..1489920) 1 NC_007929.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1489920 rpsH 3977722 rpsH Lactobacillus salivarius UCC118 30S ribosomal protein S8 YP_536308.1 1489522 R 364254 CDS YP_536309.1 90962393 3977684 complement(1489955..1490140) 1 NC_007929.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 1490140 rpsN 3977684 rpsN Lactobacillus salivarius UCC118 30S ribosomal protein S14 YP_536309.1 1489955 R 364254 CDS YP_536310.1 90962394 3977685 complement(1490153..1490695) 1 NC_007929.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1490695 rplE 3977685 rplE Lactobacillus salivarius UCC118 50S ribosomal protein L5 YP_536310.1 1490153 R 364254 CDS YP_536311.1 90962395 3977686 complement(1490720..1491025) 1 NC_007929.1 COG0198 [J] Ribosomal protein L24; 50S ribosomal protein L24P 1491025 rplX 3977686 rplX Lactobacillus salivarius UCC118 50S ribosomal protein L24P YP_536311.1 1490720 R 364254 CDS YP_536312.1 90962396 3977687 complement(1491060..1491428) 1 NC_007929.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1491428 rplN 3977687 rplN Lactobacillus salivarius UCC118 50S ribosomal protein L14 YP_536312.1 1491060 R 364254 CDS YP_536313.1 90962397 3977688 complement(1491487..1491753) 1 NC_007929.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1491753 rpsQ 3977688 rpsQ Lactobacillus salivarius UCC118 30S ribosomal protein S17 YP_536313.1 1491487 R 364254 CDS YP_536314.1 90962398 3977689 complement(1491780..1491974) 1 NC_007929.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1491974 rpmC 3977689 rpmC Lactobacillus salivarius UCC118 50S ribosomal protein L29 YP_536314.1 1491780 R 364254 CDS YP_536315.1 90962399 3977690 complement(1491964..1492398) 1 NC_007929.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1492398 rplP 3977690 rplP Lactobacillus salivarius UCC118 50S ribosomal protein L16 YP_536315.1 1491964 R 364254 CDS YP_536316.1 90962400 3977691 complement(1492402..1493058) 1 NC_007929.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1493058 rpsC 3977691 rpsC Lactobacillus salivarius UCC118 30S ribosomal protein S3 YP_536316.1 1492402 R 364254 CDS YP_536317.1 90962401 3977692 complement(1493072..1493419) 1 NC_007929.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1493419 rplV 3977692 rplV Lactobacillus salivarius UCC118 50S ribosomal protein L22 YP_536317.1 1493072 R 364254 CDS YP_536318.1 90962402 3977693 complement(1493437..1493718) 1 NC_007929.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1493718 rpsS 3977693 rpsS Lactobacillus salivarius UCC118 30S ribosomal protein S19 YP_536318.1 1493437 R 364254 CDS YP_536319.1 90962403 3977694 complement(1493766..1494599) 1 NC_007929.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1494599 rplB 3977694 rplB Lactobacillus salivarius UCC118 50S ribosomal protein L2 YP_536319.1 1493766 R 364254 CDS YP_536320.1 90962404 3977695 complement(1494625..1494909) 1 NC_007929.1 COG0089 [J] Ribosomal protein L23; 50S ribosomal protein L23P 1494909 rplW 3977695 rplW Lactobacillus salivarius UCC118 50S ribosomal protein L23P YP_536320.1 1494625 R 364254 CDS YP_536321.1 90962405 3977696 complement(1494909..1495532) 1 NC_007929.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1495532 rplD 3977696 rplD Lactobacillus salivarius UCC118 50S ribosomal protein L4 YP_536321.1 1494909 R 364254 CDS YP_536322.1 90962406 3977697 complement(1495557..1496180) 1 NC_007929.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1496180 rplC 3977697 rplC Lactobacillus salivarius UCC118 50S ribosomal protein L3 YP_536322.1 1495557 R 364254 CDS YP_536323.1 90962407 3977698 complement(1496224..1496532) 1 NC_007929.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1496532 rpsJ 3977698 rpsJ Lactobacillus salivarius UCC118 30S ribosomal protein S10 YP_536323.1 1496224 R 364254 CDS YP_536324.1 90962408 3977699 1496822..1498081 1 NC_007929.1 COG2262 [R] GTPases; GTP-binding protein 1498081 hflX 3977699 hflX Lactobacillus salivarius UCC118 GTP-binding protein YP_536324.1 1496822 D 364254 CDS YP_536325.1 90962409 3977700 complement(1498209..1499045) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; RpiR family transcriptional regulator 1499045 3977700 LSL_1438 Lactobacillus salivarius UCC118 RpiR family transcriptional regulator YP_536325.1 1498209 R 364254 CDS YP_536326.1 90962410 3977701 1499177..1499854 1 NC_007929.1 COG0120 [G] Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 1499854 rpiA 3977701 rpiA Lactobacillus salivarius UCC118 ribose 5-phosphate isomerase YP_536326.1 1499177 D 364254 CDS YP_536327.1 90962411 3977702 1499847..1500824 1 NC_007929.1 COG0673 [R] Predicted dehydrogenases and related proteins; NAD-dependent oxidoreductase 1500824 3977702 LSL_1440 Lactobacillus salivarius UCC118 NAD-dependent oxidoreductase YP_536327.1 1499847 D 364254 CDS YP_536328.1 90962412 3977703 complement(1500879..1501271) 1 NC_007929.1 hypothetical protein 1501271 3977703 LSL_1441 Lactobacillus salivarius UCC118 hypothetical protein YP_536328.1 1500879 R 364254 CDS YP_536329.1 90962413 3977646 1501521..1502840 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1502840 3977646 LSL_1442 Lactobacillus salivarius UCC118 amino acid permease YP_536329.1 1501521 D 364254 CDS YP_536330.1 90962414 3977647 complement(1502887..1503540) 1 NC_007929.1 COG0765 [E] ABC-type amino acid transport system, permease component; glutamine transport system permease 1503540 glnP 3977647 glnP Lactobacillus salivarius UCC118 glutamine transport system permease YP_536330.1 1502887 R 364254 CDS YP_536331.1 90962415 3977648 complement(1503561..1504199) 1 NC_007929.1 COG0765 [E] ABC-type amino acid transport system, permease component; glutamine transport system permease 1504199 glnM 3977648 glnM Lactobacillus salivarius UCC118 glutamine transport system permease YP_536331.1 1503561 R 364254 CDS YP_536332.1 90962416 3977649 complement(1504196..1505026) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine-binding protein 1505026 glnH 3977649 glnH Lactobacillus salivarius UCC118 glutamine-binding protein YP_536332.1 1504196 R 364254 CDS YP_536333.1 90962417 3977650 complement(1505042..1505779) 1 NC_007929.1 COG1126 [E] ABC-type polar amino acid transport system, ATPase component; glutamine transport ATP-binding protein 1505779 glnQ 3977650 glnQ Lactobacillus salivarius UCC118 glutamine transport ATP-binding protein YP_536333.1 1505042 R 364254 CDS YP_536334.1 90962418 3977651 complement(1505996..1506436) 1 NC_007929.1 hypothetical protein 1506436 3977651 LSL_1447 Lactobacillus salivarius UCC118 hypothetical protein YP_536334.1 1505996 R 364254 CDS YP_536335.1 90962419 3977652 complement(1506582..1507499) 1 NC_007929.1 hypothetical protein 1507499 3977652 LSL_1448 Lactobacillus salivarius UCC118 hypothetical protein YP_536335.1 1506582 R 364254 CDS YP_536336.1 90962420 3977653 complement(1507515..1507994) 1 NC_007929.1 COG0744 [M] Membrane carboxypeptidase (penicillin-binding protein); hypothetical protein 1507994 3977653 LSL_1449 Lactobacillus salivarius UCC118 hypothetical protein YP_536336.1 1507515 R 364254 CDS YP_536337.1 90962421 3977654 complement(1508093..1508524) 1 NC_007929.1 COG0735 [P] Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein 1508524 fur 3977654 fur Lactobacillus salivarius UCC118 ferric uptake regulation protein YP_536337.1 1508093 R 364254 CDS YP_536338.1 90962422 3977655 1508743..1510140 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1510140 3977655 LSL_1451 Lactobacillus salivarius UCC118 amino acid permease YP_536338.1 1508743 D 364254 CDS YP_536339.1 90962423 3977656 complement(1510273..1511757) 1 NC_007929.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 1511757 guaB 3977656 guaB Lactobacillus salivarius UCC118 inosine 5'-monophosphate dehydrogenase YP_536339.1 1510273 R 364254 CDS YP_536340.1 90962424 3977657 complement(1511924..1514779) 1 NC_007929.1 COG1061 [KL] DNA or RNA helicases of superfamily II; DNA/RNA helicase 1514779 ssl 3977657 ssl Lactobacillus salivarius UCC118 DNA/RNA helicase YP_536340.1 1511924 R 364254 CDS YP_536341.1 90962425 3977658 complement(1514805..1515584) 1 NC_007929.1 COG2365 [T] Protein tyrosine/serine phosphatase; protein tyrosine phosphatase 1515584 3977658 LSL_1454 Lactobacillus salivarius UCC118 protein tyrosine phosphatase YP_536341.1 1514805 R 364254 CDS YP_536342.1 90962426 3977659 complement(1515664..1516983) 1 NC_007929.1 COG1253 [R] Hemolysins and related proteins containing CBS domains; magnesium and cobalt efflux protein corC 1516983 3977659 LSL_1455 Lactobacillus salivarius UCC118 magnesium and cobalt efflux protein corC YP_536342.1 1515664 R 364254 CDS YP_536343.1 90962427 3977660 complement(1517109..1517594) 1 NC_007929.1 hypothetical protein 1517594 3977660 LSL_1456 Lactobacillus salivarius UCC118 hypothetical protein YP_536343.1 1517109 R 364254 CDS YP_536344.1 90962428 3977661 complement(1517675..1518589) 1 NC_007929.1 COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 1518589 rluD 3977661 rluD Lactobacillus salivarius UCC118 ribosomal large subunit pseudouridine synthase D YP_536344.1 1517675 R 364254 CDS YP_536345.1 90962429 3977662 complement(1518713..1519933) 1 NC_007929.1 COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 1519933 3977662 LSL_1458 Lactobacillus salivarius UCC118 ABC transporter permease YP_536345.1 1518713 R 364254 CDS YP_536346.1 90962430 3977663 complement(1519933..1520616) 1 NC_007929.1 COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter, ATP-binding protein 1520616 3977663 LSL_1459 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536346.1 1519933 R 364254 CDS YP_536347.1 90962431 3977664 complement(1520609..1521682) 1 NC_007929.1 COG0845 [M] Membrane-fusion protein; hypothetical protein 1521682 3977664 LSL_1460 Lactobacillus salivarius UCC118 hypothetical protein YP_536347.1 1520609 R 364254 CDS YP_536348.1 90962432 3977817 complement(1521868..1522734) 1 NC_007929.1 COG1940 [KG] Transcriptional regulator/sugar kinase; fructokinase 1522734 3977817 LSL_1461 Lactobacillus salivarius UCC118 fructokinase YP_536348.1 1521868 R 364254 CDS YP_536349.1 90962433 3977818 1523012..1524349 1 NC_007929.1 COG0534 [V] Na+-driven multidrug efflux pump; Na+ driven multidrug efflux pump 1524349 3977818 LSL_1462 Lactobacillus salivarius UCC118 Na+ driven multidrug efflux pump YP_536349.1 1523012 D 364254 CDS YP_536350.1 90962434 3977819 1524346..1524732 1 NC_007929.1 COG0346 [E] Lactoylglutathione lyase and related lyases; lactoylglutathione lyase family protein 1524732 3977819 LSL_1463 Lactobacillus salivarius UCC118 lactoylglutathione lyase family protein YP_536350.1 1524346 D 364254 CDS YP_536351.1 90962435 3977820 complement(1524837..1525511) 1 NC_007929.1 COG4814 [R] Uncharacterized protein with an alpha/beta hydrolase fold; cell surface hydrolase 1525511 3977820 LSL_1464 Lactobacillus salivarius UCC118 cell surface hydrolase YP_536351.1 1524837 R 364254 CDS YP_536352.1 90962436 3977821 complement(1525773..1526477) 1 NC_007929.1 COG0363 [G] 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; glucosamine-6-phosphate isomerase 1526477 nagB 3977821 nagB Lactobacillus salivarius UCC118 glucosamine-6-phosphate isomerase YP_536352.1 1525773 R 364254 CDS YP_536353.1 90962437 3977822 1526643..1527779 1 NC_007929.1 COG1820 [G] N-acetylglucosamine-6-phosphate deacetylase; N-acetylglucosamine-6-phosphate deacetylase 1527779 nagA 3977822 nagA Lactobacillus salivarius UCC118 N-acetylglucosamine-6-phosphate deacetylase YP_536353.1 1526643 D 364254 CDS YP_536354.1 90962438 3977823 complement(1527832..1528968) 1 NC_007929.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1528968 3977823 LSL_1467 Lactobacillus salivarius UCC118 succinyl-diaminopimelate desuccinylase YP_536354.1 1527832 R 364254 CDS YP_536355.1 90962439 3977824 complement(1529115..1529873) 1 NC_007929.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 1529873 fabG 3977824 fabG Lactobacillus salivarius UCC118 3-ketoacyl-(acyl-carrier-protein) reductase YP_536355.1 1529115 R 364254 CDS YP_536356.1 90962440 3977825 complement(1529873..1530100) 1 NC_007929.1 hypothetical protein 1530100 3977825 LSL_1469 Lactobacillus salivarius UCC118 hypothetical protein YP_536356.1 1529873 R 364254 CDS YP_536357.1 90962441 3977826 complement(1530114..1530611) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1530611 3977826 LSL_1470 Lactobacillus salivarius UCC118 hypothetical protein YP_536357.1 1530114 R 364254 CDS YP_536358.1 90962442 3977827 complement(1531201..1532490) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1532490 3977827 LSL_1471 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536358.1 1531201 R 364254 CDS YP_536359.1 90962443 3977828 complement(1532627..1533499) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 1533499 3977828 LSL_1472 Lactobacillus salivarius UCC118 DegV family protein YP_536359.1 1532627 R 364254 CDS YP_536360.1 90962444 3977829 complement(1533571..1533915) 1 NC_007929.1 COG0239 [D] Integral membrane protein possibly involved in chromosome condensation; CrcB family protein 1533915 crcB 3977829 crcB Lactobacillus salivarius UCC118 CrcB family protein YP_536360.1 1533571 R 364254 CDS YP_536361.1 90962445 3977830 complement(1533912..1534301) 1 NC_007929.1 COG0239 [D] Integral membrane protein possibly involved in chromosome condensation; CrcB family protein 1534301 crcB 3977830 crcB Lactobacillus salivarius UCC118 CrcB family protein YP_536361.1 1533912 R 364254 CDS YP_536362.1 90962446 3977831 complement(1534359..1534682) 1 NC_007929.1 COG0526 [OC] Thiol-disulfide isomerase and thioredoxins; thioredoxin 1534682 trxA 3977831 trxA Lactobacillus salivarius UCC118 thioredoxin YP_536362.1 1534359 R 364254 CDS YP_536363.1 90962447 3977832 complement(1534756..1535589) 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1535589 3977832 LSL_1476 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_536363.1 1534756 R 364254 CDS YP_536364.1 90962448 3977833 complement(1535689..1536825) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator 1536825 3977833 LSL_1477 Lactobacillus salivarius UCC118 LytR family transcriptional regulator YP_536364.1 1535689 R 364254 CDS YP_536365.1 90962449 3977834 complement(1537024..1537467) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1537467 3977834 LSL_1478 Lactobacillus salivarius UCC118 hypothetical protein YP_536365.1 1537024 R 364254 CDS YP_536366.1 90962450 3977835 complement(1537482..1538231) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1538231 3977835 LSL_1479 Lactobacillus salivarius UCC118 hypothetical protein YP_536366.1 1537482 R 364254 CDS YP_536367.1 90962451 3977836 complement(1538345..1538545) 1 NC_007929.1 COG1278 [K] Cold shock proteins; cold shock protein 1538545 cspC 3977836 cspC Lactobacillus salivarius UCC118 cold shock protein YP_536367.1 1538345 R 364254 CDS YP_536368.1 90962452 3977798 complement(1538693..1539340) 1 NC_007929.1 COG1321 [K] Mn-dependent transcriptional regulator; Iron-dependent repressor 1539340 troR 3977798 troR Lactobacillus salivarius UCC118 Iron-dependent repressor YP_536368.1 1538693 R 364254 CDS YP_536369.1 90962453 3977799 complement(1539467..1540357) 1 NC_007929.1 COG0564 [J] Pseudouridylate synthases, 23S RNA-specific; ribosomal large subunit pseudouridine synthase D 1540357 rluD 3977799 rluD Lactobacillus salivarius UCC118 ribosomal large subunit pseudouridine synthase D YP_536369.1 1539467 R 364254 CDS YP_536370.1 90962454 3977800 complement(1540360..1541247) 1 NC_007929.1 hypothetical protein 1541247 3977800 LSL_1483 Lactobacillus salivarius UCC118 hypothetical protein YP_536370.1 1540360 R 364254 CDS YP_536371.1 90962455 3977801 1541321..1541947 1 NC_007929.1 COG0671 [I] Membrane-associated phospholipid phosphatase; phosphatidylglycerophosphatase B 1541947 pgpB 3977801 pgpB Lactobacillus salivarius UCC118 phosphatidylglycerophosphatase B YP_536371.1 1541321 D 364254 CDS YP_536372.1 90962456 3977802 complement(1541992..1542816) 1 NC_007929.1 hypothetical protein 1542816 3977802 LSL_1485 Lactobacillus salivarius UCC118 hypothetical protein YP_536372.1 1541992 R 364254 CDS YP_536373.1 90962457 3977803 complement(1542866..1543687) 1 NC_007929.1 COG0657 [I] Esterase/lipase; endo-1,4-beta-xylanase 1543687 aes 3977803 aes Lactobacillus salivarius UCC118 endo-1,4-beta-xylanase YP_536373.1 1542866 R 364254 CDS YP_536374.1 90962458 3977804 complement(1543760..1544101) 1 NC_007929.1 hypothetical protein 1544101 3977804 LSL_1487 Lactobacillus salivarius UCC118 hypothetical protein YP_536374.1 1543760 R 364254 CDS YP_536375.1 90962459 3977805 complement(1544101..1544880) 1 NC_007929.1 COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid ABC transporter 1544880 azlC 3977805 azlC Lactobacillus salivarius UCC118 branched chain amino acid ABC transporter YP_536375.1 1544101 R 364254 CDS YP_536376.1 90962460 3977806 complement(1544970..1545209) 1 NC_007929.1 hypothetical protein 1545209 3977806 LSL_1489 Lactobacillus salivarius UCC118 hypothetical protein YP_536376.1 1544970 R 364254 CDS YP_536377.1 90962461 3977807 1545303..1546130 1 NC_007929.1 COG0708 [L] Exonuclease III; exodeoxyribonuclease III 1546130 xthA 3977807 xthA Lactobacillus salivarius UCC118 exodeoxyribonuclease III YP_536377.1 1545303 D 364254 CDS YP_536378.1 90962462 3977808 complement(1546178..1548952) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1548952 3977808 LSL_1491 Lactobacillus salivarius UCC118 hypothetical protein YP_536378.1 1546178 R 364254 CDS YP_536379.1 90962463 3977809 complement(1549122..1549913) 1 NC_007929.1 hypothetical protein 1549913 3977809 LSL_1492 Lactobacillus salivarius UCC118 hypothetical protein YP_536379.1 1549122 R 364254 CDS YP_536380.1 90962464 3977810 complement(1550107..1550925) 1 NC_007929.1 hypothetical protein 1550925 3977810 LSL_1493 Lactobacillus salivarius UCC118 hypothetical protein YP_536380.1 1550107 R 364254 CDS YP_536381.1 90962465 3977811 complement(1551382..1551960) 1 NC_007929.1 hypothetical protein 1551960 3977811 LSL_1494 Lactobacillus salivarius UCC118 hypothetical protein YP_536381.1 1551382 R 364254 CDS YP_536382.1 90962466 3977812 complement(1551974..1552555) 1 NC_007929.1 hypothetical protein 1552555 3977812 LSL_1495 Lactobacillus salivarius UCC118 hypothetical protein YP_536382.1 1551974 R 364254 CDS YP_536383.1 90962467 3977813 complement(1552734..1553255) 1 NC_007929.1 hypothetical protein 1553255 3977813 LSL_1496 Lactobacillus salivarius UCC118 hypothetical protein YP_536383.1 1552734 R 364254 CDS YP_536384.1 90962468 3977814 complement(1553245..1553718) 1 NC_007929.1 hypothetical protein 1553718 3977814 LSL_1497 Lactobacillus salivarius UCC118 hypothetical protein YP_536384.1 1553245 R 364254 CDS YP_536385.1 90962469 3977815 complement(1553862..1554548) 1 NC_007929.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1554548 gpmA 3977815 gpmA Lactobacillus salivarius UCC118 phosphoglyceromutase YP_536385.1 1553862 R 364254 CDS YP_536386.1 90962470 3977816 complement(1554642..1555829) 1 NC_007929.1 COG1168 [E] Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; aminotransferase 1555829 3977816 LSL_1499 Lactobacillus salivarius UCC118 aminotransferase YP_536386.1 1554642 R 364254 CDS YP_536387.1 90962471 3977258 complement(1555830..1556885) 1 NC_007929.1 COG0628 [R] Predicted permease; hypothetical protein 1556885 3977258 LSL_1500 Lactobacillus salivarius UCC118 hypothetical protein YP_536387.1 1555830 R 364254 CDS YP_536388.1 90962472 3977259 1556996..1557928 1 NC_007929.1 COG0697 [GER] Permeases of the drug/metabolite transporter (DMT) superfamily; drug/metabolite exporter family protein 1557928 3977259 LSL_1501 Lactobacillus salivarius UCC118 drug/metabolite exporter family protein YP_536388.1 1556996 D 364254 CDS YP_536389.1 90962473 3977260 complement(1558129..1558770) 1 NC_007929.1 COG0546 [R] Predicted phosphatases; phosphatase 1558770 3977260 LSL_1502 Lactobacillus salivarius UCC118 phosphatase YP_536389.1 1558129 R 364254 CDS YP_536390.1 90962474 3977261 complement(1558853..1559905) 1 NC_007929.1 COG2017 [G] Galactose mutarotase and related enzymes; aldose 1-epimerase 1559905 galM 3977261 galM Lactobacillus salivarius UCC118 aldose 1-epimerase YP_536390.1 1558853 R 364254 CDS YP_536391.1 90962475 3977262 complement(1560038..1560601) 1 NC_007929.1 COG0431 [R] Predicted flavoprotein; FMN reductase 1560601 3977262 LSL_1504 Lactobacillus salivarius UCC118 FMN reductase YP_536391.1 1560038 R 364254 CDS YP_536392.1 90962476 3977263 complement(1560603..1561661) 1 NC_007929.1 COG2141 [C] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; luciferase-like monooxygenase 1561661 3977263 LSL_1505 Lactobacillus salivarius UCC118 luciferase-like monooxygenase YP_536392.1 1560603 R 364254 CDS YP_536393.1 90962477 3977264 1561811..1562122 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 1562122 3977264 LSL_1506 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_536393.1 1561811 D 364254 CDS YP_536394.1 90962478 3977265 complement(1562179..1563171) 1 NC_007929.1 COG1087 [M] UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1563171 galE 3977265 galE Lactobacillus salivarius UCC118 UDP-glucose 4-epimerase YP_536394.1 1562179 R 364254 CDS YP_536395.1 90962479 3977266 1563310..1564035 1 NC_007929.1 COG1522 [K] Transcriptional regulators; GntR family transcriptional regulator 1564035 3977266 LSL_1508 Lactobacillus salivarius UCC118 GntR family transcriptional regulator YP_536395.1 1563310 D 364254 CDS YP_536396.1 90962480 3977267 1564195..1566555 1 NC_007929.1 COG3957 [G] Phosphoketolase; phosphoketolase 1566555 3977267 LSL_1509 Lactobacillus salivarius UCC118 phosphoketolase YP_536396.1 1564195 D 364254 CDS YP_536397.1 90962481 3977268 complement(1566617..1567165) 1 NC_007929.1 COG1335 [Q] Amidases related to nicotinamidase; pyrazinamidase / nicotinamidase 1567165 pncA 3977268 pncA Lactobacillus salivarius UCC118 pyrazinamidase / nicotinamidase YP_536397.1 1566617 R 364254 CDS YP_536398.1 90962482 3977269 1567308..1567898 1 NC_007929.1 COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 1567898 gpmB 3977269 gpmB Lactobacillus salivarius UCC118 phosphoglycerate mutase YP_536398.1 1567308 D 364254 CDS YP_536399.1 90962483 3977270 complement(1567963..1569885) 1 NC_007929.1 COG1263 [G] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; PTS system, trehalose-specific IIBC component 1569885 treB 3977270 treB Lactobacillus salivarius UCC118 PTS system, trehalose-specific IIBC component YP_536399.1 1567963 R 364254 CDS YP_536400.1 90962484 3977271 1570096..1570809 1 NC_007929.1 COG1522 [K] Transcriptional regulators; trehalose operon transcriptional repressor 1570809 treR 3977271 treR Lactobacillus salivarius UCC118 trehalose operon transcriptional repressor YP_536400.1 1570096 D 364254 CDS YP_536401.1 90962485 3977272 1570828..1572489 1 NC_007929.1 COG0366 [G] Glycosidases; trehalose-6-phosphate hydrolase 1572489 treC 3977272 treC Lactobacillus salivarius UCC118 trehalose-6-phosphate hydrolase YP_536401.1 1570828 D 364254 CDS YP_536402.1 90962486 3977273 complement(1572536..1573756) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump 1573756 3977273 LSL_1515 Lactobacillus salivarius UCC118 multidrug resistance efflux pump YP_536402.1 1572536 R 364254 CDS YP_536403.1 90962487 3977275 complement(1577448..1579361) 1 NC_007929.1 COG5263 [R] FOG: Glucan-binding domain (YG repeat); N-acetylmuramoyl-L-alanine amidase 1579361 3977275 LSL_1516 Lactobacillus salivarius UCC118 N-acetylmuramoyl-L-alanine amidase YP_536403.1 1577448 R 364254 CDS YP_536404.1 90962488 3977276 complement(1579413..1580327) 1 NC_007929.1 COG5263 [R] FOG: Glucan-binding domain (YG repeat); glucosyltransferase-S 1580327 3977276 LSL_1517 Lactobacillus salivarius UCC118 glucosyltransferase-S YP_536404.1 1579413 R 364254 CDS YP_536405.1 90962489 3976971 complement(1580404..1581282) 1 NC_007929.1 COG0083 [E] Homoserine kinase; homoserine kinase 1581282 thrB 3976971 thrB Lactobacillus salivarius UCC118 homoserine kinase YP_536405.1 1580404 R 364254 CDS YP_536406.1 90962490 3976972 complement(1581287..1582573) 1 NC_007929.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1582573 thrA 3976972 thrA Lactobacillus salivarius UCC118 homoserine dehydrogenase YP_536406.1 1581287 R 364254 CDS YP_536407.1 90962491 3976973 1582721..1583707 1 NC_007929.1 COG1477 [H] Membrane-associated lipoprotein involved in thiamine biosynthesis; Iron-sulfur cluster assembly/repair protein 1583707 apbE 3976973 apbE Lactobacillus salivarius UCC118 Iron-sulfur cluster assembly/repair protein YP_536407.1 1582721 D 364254 CDS YP_536408.1 90962492 3976974 1583777..1585264 1 NC_007929.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1585264 thrC 3976974 thrC Lactobacillus salivarius UCC118 threonine synthase YP_536408.1 1583777 D 364254 CDS YP_536409.1 90962493 3976975 1585410..1587848 1 NC_007929.1 COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein 1587848 3976975 LSL_1522 Lactobacillus salivarius UCC118 hypothetical protein YP_536409.1 1585410 D 364254 CDS YP_536410.1 90962494 3976976 complement(1587927..1589552) 1 NC_007929.1 hypothetical protein 1589552 3976976 LSL_1523 Lactobacillus salivarius UCC118 hypothetical protein YP_536410.1 1587927 R 364254 CDS YP_536411.1 90962495 3976977 complement(1589573..1590625) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 1590625 rfaG 3976977 rfaG Lactobacillus salivarius UCC118 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase YP_536411.1 1589573 R 364254 CDS YP_536412.1 90962496 3976978 1590785..1591963 1 NC_007929.1 hypothetical protein 1591963 3976978 LSL_1525 Lactobacillus salivarius UCC118 hypothetical protein YP_536412.1 1590785 D 364254 CDS YP_536413.1 90962497 3976979 1591963..1592763 1 NC_007929.1 polysachharide biosynthesis protein 1592763 3976979 LSL_1526 Lactobacillus salivarius UCC118 polysachharide biosynthesis protein YP_536413.1 1591963 D 364254 CDS YP_536414.1 90962498 3976982 1598791..1599849 1 NC_007929.1 COG3594 [G] Fucose 4-O-acetylase and related acetyltransferases; O-acetyl transferase 1599849 3976982 LSL_1527 Lactobacillus salivarius UCC118 O-acetyl transferase YP_536414.1 1598791 D 364254 CDS YP_536415.1 90962499 3976983 1600019..1601002 1 NC_007929.1 COG1957 [F] Inosine-uridine nucleoside N-ribohydrolase; inosine-uridine preferring nucleoside hydrolase 1601002 uRH 3976983 uRH Lactobacillus salivarius UCC118 inosine-uridine preferring nucleoside hydrolase YP_536415.1 1600019 D 364254 CDS YP_536416.1 90962500 3976984 1601006..1601566 1 NC_007929.1 hypothetical protein 1601566 3976984 LSL_1529 Lactobacillus salivarius UCC118 hypothetical protein YP_536416.1 1601006 D 364254 CDS YP_536417.1 90962501 3976985 complement(1601647..1602939) 1 NC_007929.1 COG0431 [R] Predicted flavoprotein; oxidoreductase 1602939 3976985 LSL_1530 Lactobacillus salivarius UCC118 oxidoreductase YP_536417.1 1601647 R 364254 CDS YP_536418.1 90962502 3976986 complement(1602957..1603562) 1 NC_007929.1 COG0431 [R] Predicted flavoprotein; oxidoreductase 1603562 3976986 LSL_1531 Lactobacillus salivarius UCC118 oxidoreductase YP_536418.1 1602957 R 364254 CDS YP_536419.1 90962503 3976987 complement(1603730..1604884) 1 NC_007929.1 COG1686 [M] D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine serine-type carboxypeptidase 1604884 dacC 3976987 dacC Lactobacillus salivarius UCC118 D-alanyl-D-alanine serine-type carboxypeptidase YP_536419.1 1603730 R 364254 CDS YP_536420.1 90962504 3976988 complement(1605255..1606430) 1 NC_007929.1 COG0475 [P] Kef-type K+ transport systems, membrane components; Na+/H+ antiporter 1606430 napA 3976988 napA Lactobacillus salivarius UCC118 Na+/H+ antiporter YP_536420.1 1605255 R 364254 CDS YP_536421.1 90962505 3976683 1606612..1609017 1 NC_007929.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase 1609017 3976683 LSL_1534 Lactobacillus salivarius UCC118 x-prolyl-dipeptidyl aminopeptidase YP_536421.1 1606612 D 364254 CDS YP_536422.1 90962506 3976684 complement(1609082..1611736) 1 NC_007929.1 COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein 1611736 3976684 LSL_1535 Lactobacillus salivarius UCC118 hypothetical protein YP_536422.1 1609082 R 364254 CDS YP_536423.1 90962507 3976685 complement(1611877..1613412) 1 NC_007929.1 hypothetical protein 1613412 3976685 LSL_1536 Lactobacillus salivarius UCC118 hypothetical protein YP_536423.1 1611877 R 364254 CDS YP_536424.1 90962508 3976686 complement(1613487..1615043) 1 NC_007929.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1615043 guaA 3976686 guaA Lactobacillus salivarius UCC118 GMP synthase YP_536424.1 1613487 R 364254 CDS YP_536425.1 90962509 3976687 complement(1615140..1616060) 1 NC_007929.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1616060 coaA 3976687 coaA Lactobacillus salivarius UCC118 pantothenate kinase YP_536425.1 1615140 R 364254 CDS YP_536426.1 90962510 3976688 1616167..1616763 1 NC_007929.1 COG2755 [E] Lysophospholipase L1 and related esterases; GDSL-like lipase/acylhydrolase 1616763 3976688 LSL_1539 Lactobacillus salivarius UCC118 GDSL-like lipase/acylhydrolase YP_536426.1 1616167 D 364254 CDS YP_536427.1 90962511 3976689 complement(1616839..1617579) 1 NC_007929.1 COG1126 [E] ABC-type polar amino acid transport system, ATPase component; ABC transporter, ATP-binding protein 1617579 3976689 LSL_1540 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536427.1 1616839 R 364254 CDS YP_536428.1 90962512 3976690 complement(1617572..1619071) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter 1619071 3976690 LSL_1541 Lactobacillus salivarius UCC118 amino acid ABC transporter YP_536428.1 1617572 R 364254 CDS YP_536429.1 90962513 3976691 complement(1619301..1620791) 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1620791 3976691 LSL_1542 Lactobacillus salivarius UCC118 amino acid permease YP_536429.1 1619301 R 364254 CDS YP_536430.1 90962514 3976692 1621105..1621428 1 NC_007929.1 COG1694 [R] Predicted pyrophosphatase; hypothetical protein 1621428 3976692 LSL_1543 Lactobacillus salivarius UCC118 hypothetical protein YP_536430.1 1621105 D 364254 CDS YP_536431.1 90962515 3976693 1621432..1622604 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance efflux pump 1622604 3976693 LSL_1544 Lactobacillus salivarius UCC118 multidrug resistance efflux pump YP_536431.1 1621432 D 364254 CDS YP_536432.1 90962516 3976694 complement(1622674..1623321) 1 NC_007929.1 hypothetical protein 1623321 3976694 LSL_1545 Lactobacillus salivarius UCC118 hypothetical protein YP_536432.1 1622674 R 364254 CDS YP_536433.1 90962517 3976695 complement(1623354..1626176) 1 NC_007929.1 COG5263 [R] FOG: Glucan-binding domain (YG repeat); hypothetical protein 1626176 3976695 LSL_1546 Lactobacillus salivarius UCC118 hypothetical protein YP_536433.1 1623354 R 364254 CDS YP_536434.1 90962518 3976696 complement(1626392..1627822) 1 NC_007929.1 COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase; oligosaccharide translocase 1627822 3976696 LSL_1547 Lactobacillus salivarius UCC118 oligosaccharide translocase YP_536434.1 1626392 R 364254 CDS YP_536435.1 90962519 3976697 complement(1627825..1628940) 1 NC_007929.1 COG0562 [M] UDP-galactopyranose mutase; UDP-galactopyranose mutase 1628940 glf 3976697 glf Lactobacillus salivarius UCC118 UDP-galactopyranose mutase YP_536435.1 1627825 R 364254 CDS YP_536436.1 90962520 3976698 1629110..1629991 1 NC_007929.1 hypothetical protein 1629991 3976698 LSL_1549 Lactobacillus salivarius UCC118 hypothetical protein YP_536436.1 1629110 D 364254 CDS YP_536437.1 90962521 3976699 complement(1630020..1630685) 1 NC_007929.1 COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis; undecaprenyl-phosphate beta-glucosephosphotransferase 1630685 3976699 LSL_1550 Lactobacillus salivarius UCC118 undecaprenyl-phosphate beta-glucosephosphotransferase YP_536437.1 1630020 R 364254 CDS YP_536438.1 90962522 3976700 complement(1630765..1631739) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LytR family transcriptional regulator 1631739 3976700 LSL_1551 Lactobacillus salivarius UCC118 LytR family transcriptional regulator YP_536438.1 1630765 R 364254 CDS YP_536439.1 90962523 3976701 complement(1631759..1632535) 1 NC_007929.1 COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; phosphotyrosine-protein phosphatase 1632535 3976701 LSL_1552 Lactobacillus salivarius UCC118 phosphotyrosine-protein phosphatase YP_536439.1 1631759 R 364254 CDS YP_536440.1 90962524 3976801 complement(1632887..1633612) 1 NC_007929.1 COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis; tyrosine-protein kinase 1633612 3976801 LSL_1553 Lactobacillus salivarius UCC118 tyrosine-protein kinase YP_536440.1 1632887 R 364254 CDS YP_536441.1 90962525 3976802 complement(1633630..1634427) 1 NC_007929.1 COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis; chain length regulator 1634427 3976802 LSL_1554 Lactobacillus salivarius UCC118 chain length regulator YP_536441.1 1633630 R 364254 CDS YP_536442.1 90962526 3976805 complement(1635996..1637225) 1 NC_007929.1 COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; polysacharide biosyntheis protein 1637225 rfbX 3976805 rfbX Lactobacillus salivarius UCC118 polysacharide biosyntheis protein YP_536442.1 1635996 R 364254 CDS YP_536443.1 90962527 3976806 complement(1637261..1638484) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1638484 rfaG 3976806 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536443.1 1637261 R 364254 CDS YP_536444.1 90962528 3976807 complement(1638504..1639679) 1 NC_007929.1 hypothetical protein 1639679 3976807 LSL_1557 Lactobacillus salivarius UCC118 hypothetical protein YP_536444.1 1638504 R 364254 CDS YP_536445.1 90962529 3976808 complement(1639699..1640622) 1 NC_007929.1 capsular polysaccharide synthesis protein 1640622 3976808 LSL_1558 Lactobacillus salivarius UCC118 capsular polysaccharide synthesis protein YP_536445.1 1639699 R 364254 CDS YP_536446.1 90962530 3976809 complement(1640597..1641709) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1641709 rfaG 3976809 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536446.1 1640597 R 364254 CDS YP_536447.1 90962531 3976810 complement(1641712..1642755) 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 1642755 rfaG 3976810 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536447.1 1641712 R 364254 CDS YP_536448.1 90962532 3976811 complement(1642795..1643889) 1 NC_007929.1 COG0438 [M] Glycosyltransferase; glycosyltransferase 1643889 rfaG 3976811 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536448.1 1642795 R 364254 CDS YP_536449.1 90962533 3976812 complement(1644411..1644536) 1 NC_007929.1 hypothetical protein 1644536 3976812 LSL_1562 Lactobacillus salivarius UCC118 hypothetical protein YP_536449.1 1644411 R 364254 CDS YP_536450.1 90962534 3976813 complement(1644609..1645898) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1645898 3976813 LSL_1563 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536450.1 1644609 R 364254 CDS YP_536451.1 90962535 3976814 complement(1646014..1647705) 1 NC_007929.1 COG0210 [L] Superfamily I DNA and RNA helicases; DNA helicase 1647705 3976814 LSL_1564 Lactobacillus salivarius UCC118 DNA helicase YP_536451.1 1646014 R 364254 CDS YP_536452.1 90962536 3976815 complement(1647690..1649729) 1 NC_007929.1 COG3593 [L] Predicted ATP-dependent endonuclease of the OLD family; hypothetical protein 1649729 3976815 LSL_1565 Lactobacillus salivarius UCC118 hypothetical protein YP_536452.1 1647690 R 364254 CDS YP_536453.1 90962537 3976816 complement(1649923..1651320) 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1651320 3976816 LSL_1566 Lactobacillus salivarius UCC118 hypothetical protein YP_536453.1 1649923 R 364254 CDS YP_536454.1 90962538 3976817 complement(1651345..1652181) 1 NC_007929.1 hypothetical protein 1652181 3976817 LSL_1567 Lactobacillus salivarius UCC118 hypothetical protein YP_536454.1 1651345 R 364254 CDS YP_536455.1 90962539 3976818 complement(1652242..1653345) 1 NC_007929.1 COG1472 [G] beta-glucosidase-related glycosidases; beta-N-acetylhexosaminidase 1653345 3976818 LSL_1568 Lactobacillus salivarius UCC118 beta-N-acetylhexosaminidase YP_536455.1 1652242 R 364254 CDS YP_536456.1 90962540 3976781 complement(1653564..1654400) 1 NC_007929.1 COG1091 [M] dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1654400 rfbD 3976781 rfbD Lactobacillus salivarius UCC118 dTDP-4-dehydrorhamnose reductase YP_536456.1 1653564 R 364254 CDS YP_536457.1 90962541 3976782 complement(1654456..1655487) 1 NC_007929.1 COG1088 [M] dTDP-D-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1655487 rfbB 3976782 rfbB Lactobacillus salivarius UCC118 dTDP-glucose 4,6-dehydratase YP_536457.1 1654456 R 364254 CDS YP_536458.1 90962542 3976783 complement(1655499..1656080) 1 NC_007929.1 COG1898 [M] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes; dTDP-4-dehydrorhamnose 3,5-epimerase 1656080 rfbC 3976783 rfbC Lactobacillus salivarius UCC118 dTDP-4-dehydrorhamnose 3,5-epimerase YP_536458.1 1655499 R 364254 CDS YP_536459.1 90962543 3976784 complement(1656083..1656952) 1 NC_007929.1 COG1209 [M] dTDP-glucose pyrophosphorylase; glucose-1-phosphate thymidylyltransferase 1656952 rfbA 3976784 rfbA Lactobacillus salivarius UCC118 glucose-1-phosphate thymidylyltransferase YP_536459.1 1656083 R 364254 CDS YP_536460.1 90962544 3976785 complement(1657078..1658079) 1 NC_007929.1 COG0463 [M] Glycosyltransferases involved in cell wall biogenesis; glycosyltransferase 1658079 rfaG 3976785 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536460.1 1657078 R 364254 CDS YP_536461.1 90962545 3976786 complement(1658161..1658973) 1 NC_007929.1 glycosyltransferase 1658973 rfaG 3976786 rfaG Lactobacillus salivarius UCC118 glycosyltransferase YP_536461.1 1658161 R 364254 CDS YP_536462.1 90962546 3976787 1659206..1659847 1 NC_007929.1 COG1266 [R] Predicted metal-dependent membrane protease; hypothetical protein 1659847 3976787 LSL_1575 Lactobacillus salivarius UCC118 hypothetical protein YP_536462.1 1659206 D 364254 CDS YP_536463.1 90962547 3976788 complement(1659882..1660526) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1660526 3976788 LSL_1576 Lactobacillus salivarius UCC118 hypothetical protein YP_536463.1 1659882 R 364254 CDS YP_536464.1 90962548 3976789 complement(1660542..1661207) 1 NC_007929.1 COG0637 [R] Predicted phosphatase/phosphohexomutase; HAD superfamily hydrolase 1661207 3976789 LSL_1577 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_536464.1 1660542 R 364254 CDS YP_536465.1 90962549 3976790 complement(1661297..1662652) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; multidrug resistance protein B 1662652 3976790 LSL_1578 Lactobacillus salivarius UCC118 multidrug resistance protein B YP_536465.1 1661297 R 364254 CDS YP_536466.1 90962550 3976791 1662840..1663004 1 NC_007929.1 hypothetical protein 1663004 3976791 LSL_1579 Lactobacillus salivarius UCC118 hypothetical protein YP_536466.1 1662840 D 364254 CDS YP_536467.1 90962551 3976792 1663081..1663539 1 NC_007929.1 COG1418 [R] Predicted HD superfamily hydrolase; metal-dependent phosphohydrolase 1663539 3976792 LSL_1580 Lactobacillus salivarius UCC118 metal-dependent phosphohydrolase YP_536467.1 1663081 D 364254 CDS YP_536468.1 90962552 3976793 1663807..1664196 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MerR family transcriptional regulator 1664196 3976793 LSL_1581 Lactobacillus salivarius UCC118 MerR family transcriptional regulator YP_536468.1 1663807 D 364254 CDS YP_536469.1 90962553 3976794 complement(1664242..1665021) 1 NC_007929.1 NADPH-dependent FMN reductase 1665021 3976794 LSL_1582 Lactobacillus salivarius UCC118 NADPH-dependent FMN reductase YP_536469.1 1664242 R 364254 CDS YP_536470.1 90962554 3976795 complement(1665083..1665877) 1 NC_007929.1 COG0351 [H] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1665877 thiD 3976795 thiD Lactobacillus salivarius UCC118 phosphomethylpyrimidine kinase YP_536470.1 1665083 R 364254 CDS YP_536471.1 90962555 3976796 complement(1665947..1666489) 1 NC_007929.1 hypothetical protein 1666489 3976796 LSL_1584 Lactobacillus salivarius UCC118 hypothetical protein YP_536471.1 1665947 R 364254 CDS YP_536472.1 90962556 3976797 complement(1666729..1667529) 1 NC_007929.1 COG1108 [P] ABC-type Mn2+/Zn2+ transport systems, permease components; ABC transporter permease 1667529 3976797 LSL_1585 Lactobacillus salivarius UCC118 ABC transporter permease YP_536472.1 1666729 R 364254 CDS YP_536473.1 90962557 3976798 complement(1667522..1668190) 1 NC_007929.1 COG1121 [P] ABC-type Mn/Zn transport systems, ATPase component; ABC transporter, ATP-binding protein 1668190 3976798 LSL_1586 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536473.1 1667522 R 364254 CDS YP_536474.1 90962558 3976799 complement(1668193..1669059) 1 NC_007929.1 COG0803 [P] ABC-type metal ion transport system, periplasmic component/surface adhesin; ABC transporter substrate-binding protein 1669059 3976799 LSL_1587 Lactobacillus salivarius UCC118 ABC transporter substrate-binding protein YP_536474.1 1668193 R 364254 CDS YP_536475.1 90962559 3976800 complement(1669293..1670174) 1 NC_007929.1 hypothetical protein 1670174 3976800 LSL_1588 Lactobacillus salivarius UCC118 hypothetical protein YP_536475.1 1669293 R 364254 CDS YP_536476.1 90962560 3976474 1671456..1672142 1 NC_007929.1 COG0596 [R] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); hypothetical protein 1672142 3976474 LSL_1591 Lactobacillus salivarius UCC118 hypothetical protein YP_536476.1 1671456 D 364254 CDS YP_536477.1 90962561 3976475 complement(1672241..1674010) 1 NC_007929.1 hypothetical protein 1674010 3976475 LSL_1592 Lactobacillus salivarius UCC118 hypothetical protein YP_536477.1 1672241 R 364254 CDS YP_536478.1 90962562 3976476 complement(1674040..1674786) 1 NC_007929.1 COG4858 [S] Uncharacterized membrane-bound protein conserved in bacteria; hypothetical protein 1674786 3976476 LSL_1593 Lactobacillus salivarius UCC118 hypothetical protein YP_536478.1 1674040 R 364254 CDS YP_536479.1 90962563 3976477 complement(1674816..1675916) 1 NC_007929.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1675916 3976477 LSL_1594 Lactobacillus salivarius UCC118 GTP-dependent nucleic acid-binding protein EngD YP_536479.1 1674816 R 364254 CDS YP_536480.1 90962564 3976478 complement(1675934..1676128) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1676128 3976478 LSL_1595 Lactobacillus salivarius UCC118 hypothetical protein YP_536480.1 1675934 R 364254 CDS YP_536481.1 90962565 3976479 complement(1676145..1677020) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; chromosome partitioning protein, DNA-binding protein 1677020 parB 3976479 parB Lactobacillus salivarius UCC118 chromosome partitioning protein, DNA-binding protein YP_536481.1 1676145 R 364254 CDS YP_536482.1 90962566 3976480 complement(1677010..1677777) 1 NC_007929.1 COG0455 [D] ATPases involved in chromosome partitioning; chromosome partitioning protein parA 1677777 3976480 LSL_1597 Lactobacillus salivarius UCC118 chromosome partitioning protein parA YP_536482.1 1677010 R 364254 CDS YP_536483.1 90962567 3976481 complement(1677795..1678637) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; chromosome partitioning protein 1678637 parB 3976481 parB Lactobacillus salivarius UCC118 chromosome partitioning protein YP_536483.1 1677795 R 364254 CDS YP_536484.1 90962568 3976482 complement(1678668..1679393) 1 NC_007929.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1679393 gidB 3976482 gidB Lactobacillus salivarius UCC118 16S rRNA methyltransferase GidB YP_536484.1 1678668 R 364254 CDS YP_536485.1 90962569 3976483 complement(1679556..1680464) 1 NC_007929.1 COG0039 [C] Malate/lactate dehydrogenases; L-2-hydroxyisocaproate dehydrogenase 1680464 3976483 LSL_1600 Lactobacillus salivarius UCC118 L-2-hydroxyisocaproate dehydrogenase YP_536485.1 1679556 R 364254 CDS YP_536486.1 90962570 3976484 1680578..1682254 1 NC_007929.1 COG0584 [C] Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 1682254 3976484 LSL_1601 Lactobacillus salivarius UCC118 glycerophosphodiester phosphodiesterase YP_536486.1 1680578 D 364254 CDS YP_536487.1 90962571 3976485 complement(1682320..1684965) 1 NC_007929.1 COG0474 [P] Cation transport ATPase; calcium-transporting ATPase 1684965 3976485 LSL_1602 Lactobacillus salivarius UCC118 calcium-transporting ATPase YP_536487.1 1682320 R 364254 CDS YP_536488.1 90962572 3976486 1685225..1685761 1 NC_007929.1 COG1611 [R] Predicted Rossmann fold nucleotide-binding protein; hypothetical protein 1685761 3976486 LSL_1603 Lactobacillus salivarius UCC118 hypothetical protein YP_536488.1 1685225 D 364254 CDS YP_536489.1 90962573 3976487 complement(1685817..1686386) 1 NC_007929.1 COG0693 [R] intracellular protease/amidase; 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme 1686386 thiJ 3976487 thiJ Lactobacillus salivarius UCC118 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme YP_536489.1 1685817 R 364254 CDS YP_536490.1 90962574 3976488 complement(1686388..1687017) 1 NC_007929.1 hypothetical protein 1687017 3976488 LSL_1605 Lactobacillus salivarius UCC118 hypothetical protein YP_536490.1 1686388 R 364254 CDS YP_536491.1 90962575 3976489 complement(1687151..1687819) 1 NC_007929.1 COG3764 [M] Sortase (surface protein transpeptidase); sortase 1687819 3976489 LSL_1606 Lactobacillus salivarius UCC118 sortase YP_536491.1 1687151 R 364254 CDS YP_536492.1 90962576 3976490 complement(1687868..1691614) 1 NC_007929.1 COG1074 [L] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); ATP-dependent nuclease subunit A 1691614 3976490 LSL_1607 Lactobacillus salivarius UCC118 ATP-dependent nuclease subunit A YP_536492.1 1687868 R 364254 CDS YP_536493.1 90962577 3976761 complement(1691619..1695200) 1 NC_007929.1 COG3857 [L] ATP-dependent nuclease, subunit B; ATP-dependent nuclease subunit B 1695200 3976761 LSL_1608 Lactobacillus salivarius UCC118 ATP-dependent nuclease subunit B YP_536493.1 1691619 R 364254 CDS YP_536494.1 90962578 3976762 1695311..1695679 1 NC_007929.1 hypothetical protein 1695679 3976762 LSL_1609 Lactobacillus salivarius UCC118 hypothetical protein YP_536494.1 1695311 D 364254 CDS YP_536495.1 90962579 3976763 complement(1695752..1696720) 1 NC_007929.1 COG0462 [FE] Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 1696720 prsA 3976763 prsA Lactobacillus salivarius UCC118 ribose-phosphate pyrophosphokinase YP_536495.1 1695752 R 364254 CDS YP_536496.1 90962580 3976764 complement(1696814..1698061) 1 NC_007929.1 COG0014 [E] Gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 1698061 proA 3976764 proA Lactobacillus salivarius UCC118 gamma-glutamyl phosphate reductase YP_536496.1 1696814 R 364254 CDS YP_536497.1 90962581 3976765 complement(1698073..1698876) 1 NC_007929.1 COG0263 [E] Glutamate 5-kinase; glutamate 5-kinase 1698876 proB 3976765 proB Lactobacillus salivarius UCC118 glutamate 5-kinase YP_536497.1 1698073 R 364254 CDS YP_536498.1 90962582 3976766 complement(1699010..1699975) 1 NC_007929.1 COG1482 [G] Phosphomannose isomerase; mannose-6-phosphate isomerase 1699975 manA 3976766 manA Lactobacillus salivarius UCC118 mannose-6-phosphate isomerase YP_536498.1 1699010 R 364254 CDS YP_536499.1 90962583 3976767 complement(1700230..1700547) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1700547 3976767 LSL_1614 Lactobacillus salivarius UCC118 hypothetical protein YP_536499.1 1700230 R 364254 CDS YP_536500.1 90962584 3976768 complement(1700550..1701341) 1 NC_007929.1 hypothetical protein 1701341 3976768 LSL_1615 Lactobacillus salivarius UCC118 hypothetical protein YP_536500.1 1700550 R 364254 CDS YP_536501.1 90962585 3976769 complement(1701328..1702206) 1 NC_007929.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 1702206 3976769 LSL_1616 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536501.1 1701328 R 364254 CDS YP_536502.1 90962586 3976770 complement(1702209..1702577) 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; GntR family transcriptional regulator 1702577 3976770 LSL_1617 Lactobacillus salivarius UCC118 GntR family transcriptional regulator YP_536502.1 1702209 R 364254 CDS YP_536503.1 90962587 3976771 complement(1702714..1703862) 1 NC_007929.1 COG0246 [G] Mannitol-1-phosphate/altronate dehydrogenases; mannitol-1-phosphate 5-dehydrogenase 1703862 mtlD 3976771 mtlD Lactobacillus salivarius UCC118 mannitol-1-phosphate 5-dehydrogenase YP_536503.1 1702714 R 364254 CDS YP_536504.1 90962588 3976772 complement(1703862..1704305) 1 NC_007929.1 COG4668 [G] Mannitol/fructose-specific phosphotransferase system, IIA domain; PTS system, mannitol-specific IIA component 1704305 3976772 LSL_1619 Lactobacillus salivarius UCC118 PTS system, mannitol-specific IIA component YP_536504.1 1703862 R 364254 CDS YP_536505.1 90962589 3976773 complement(1704320..1706110) 1 NC_007929.1 COG2213 [G] Phosphotransferase system, mannitol-specific IIBC component; PTS system, mannitol-specific IIBC component 1706110 mtlA 3976773 mtlA Lactobacillus salivarius UCC118 PTS system, mannitol-specific IIBC component YP_536505.1 1704320 R 364254 CDS YP_536506.1 90962590 3976774 complement(1706374..1707099) 1 NC_007929.1 COG0861 [P] Membrane protein TerC, possibly involved in tellurium resistance; tellurium resistance protein 1707099 terC 3976774 terC Lactobacillus salivarius UCC118 tellurium resistance protein YP_536506.1 1706374 R 364254 CDS YP_536507.1 90962591 3976775 complement(1707202..1707612) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; Cro/CI family transcriptional regulator 1707612 3976775 LSL_1622 Lactobacillus salivarius UCC118 Cro/CI family transcriptional regulator YP_536507.1 1707202 R 364254 CDS YP_536508.1 90962592 3976776 complement(1707741..1708559) 1 NC_007929.1 COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; amino acid ABC transporter substrate-binding protein 1708559 3976776 LSL_1623 Lactobacillus salivarius UCC118 amino acid ABC transporter substrate-binding protein YP_536508.1 1707741 R 364254 CDS YP_536509.1 90962593 3976777 complement(1708665..1709954) 1 NC_007929.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 1709954 3976777 LSL_1624 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536509.1 1708665 R 364254 CDS YP_536510.1 90962594 3976778 complement(1710089..1710835) 1 NC_007929.1 COG1126 [E] ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein 1710835 3976778 LSL_1625 Lactobacillus salivarius UCC118 amino acid ABC transporter ATP-binding protein YP_536510.1 1710089 R 364254 CDS YP_536511.1 90962595 3976779 complement(1710858..1711553) 1 NC_007929.1 COG0765 [E] ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 1711553 3976779 LSL_1626 Lactobacillus salivarius UCC118 amino acid ABC transporter permease YP_536511.1 1710858 R 364254 CDS YP_536512.1 90962596 3976780 complement(1711940..1713757) 1 NC_007929.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1713757 glmS 3976780 glmS Lactobacillus salivarius UCC118 glucosamine--fructose-6-phosphate aminotransferase YP_536512.1 1711940 R 364254 CDS YP_536513.1 90962597 3976404 complement(1713902..1715986) 1 NC_007929.1 COG3711 [K] Transcriptional antiterminator; transcription regulator 1715986 3976404 LSL_1628 Lactobacillus salivarius UCC118 transcription regulator YP_536513.1 1713902 R 364254 CDS YP_536514.1 90962598 3976405 complement(1716072..1717649) 1 NC_007929.1 COG0025 [P] NhaP-type Na+/H+ and K+/H+ antiporters; Na+/H+ antiporter 1717649 nhaP 3976405 nhaP Lactobacillus salivarius UCC118 Na+/H+ antiporter YP_536514.1 1716072 R 364254 CDS YP_536515.1 90962599 3976406 complement(1717950..1718657) 1 NC_007929.1 COG0580 [G] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family); glycerol uptake facilitator protein 1718657 glpF 3976406 glpF Lactobacillus salivarius UCC118 glycerol uptake facilitator protein YP_536515.1 1717950 R 364254 CDS YP_536516.1 90962600 3976407 complement(1718669..1719037) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1719037 3976407 LSL_1631 Lactobacillus salivarius UCC118 hypothetical protein YP_536516.1 1718669 R 364254 CDS YP_536517.1 90962601 3976408 complement(1719037..1719621) 1 NC_007929.1 COG2376 [G] Dihydroxyacetone kinase; dihydroxyacetone kinase 1719621 dAK 3976408 dAK Lactobacillus salivarius UCC118 dihydroxyacetone kinase YP_536517.1 1719037 R 364254 CDS YP_536518.1 90962602 3976409 complement(1719650..1720645) 1 NC_007929.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 1720645 dAK 3976409 dAK Lactobacillus salivarius UCC118 dihydroxyacetone kinase subunit DhaK YP_536518.1 1719650 R 364254 CDS YP_536519.1 90962603 3976410 1720791..1721747 1 NC_007929.1 similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone; DhaKLM operon coactivator DhaQ 1721747 dAK 3976410 dAK Lactobacillus salivarius UCC118 DhaKLM operon coactivator DhaQ YP_536519.1 1720791 D 364254 CDS YP_536520.1 90962604 3976411 complement(1721748..1722272) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; hypothetical protein 1722272 3976411 LSL_1635 Lactobacillus salivarius UCC118 hypothetical protein YP_536520.1 1721748 R 364254 CDS YP_536521.1 90962605 3976412 complement(1722418..1723800) 1 NC_007929.1 COG1114 [E] Branched-chain amino acid permeases; branched chain amino acid ABC transporter carrier protein 1723800 brnQ 3976412 brnQ Lactobacillus salivarius UCC118 branched chain amino acid ABC transporter carrier protein YP_536521.1 1722418 R 364254 CDS YP_536522.1 90962606 3976413 1724339..1724605 1 NC_007929.1 hypothetical protein 1724605 3976413 LSL_1637 Lactobacillus salivarius UCC118 hypothetical protein YP_536522.1 1724339 D 364254 CDS YP_536523.1 90962607 3976414 complement(1724660..1725490) 1 NC_007929.1 DNA-entry nuclease 1725490 3976414 LSL_1638 Lactobacillus salivarius UCC118 DNA-entry nuclease YP_536523.1 1724660 R 364254 CDS YP_536524.1 90962608 3976416 complement(1726515..1728446) 1 NC_007929.1 COG0474 [P] Cation transport ATPase; zinc-transporting ATPase 1728446 3976416 LSL_1639 Lactobacillus salivarius UCC118 zinc-transporting ATPase YP_536524.1 1726515 R 364254 CDS YP_536525.1 90962609 3976417 1728560..1728910 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; ArsR family transcriptional regulator 1728910 3976417 LSL_1640 Lactobacillus salivarius UCC118 ArsR family transcriptional regulator YP_536525.1 1728560 D 364254 CDS YP_536526.1 90962610 3976418 complement(1728958..1730652) 1 NC_007929.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 1730652 3976418 LSL_1641 Lactobacillus salivarius UCC118 myosin-cross-reactive antigen YP_536526.1 1728958 R 364254 CDS YP_536527.1 90962611 3976419 complement(1730813..1731550) 1 NC_007929.1 COG1428 [F] Deoxynucleoside kinases; deoxyguanosine kinase 1731550 3976419 LSL_1642 Lactobacillus salivarius UCC118 deoxyguanosine kinase YP_536527.1 1730813 R 364254 CDS YP_536528.1 90962612 3976420 1731785..1732252 1 NC_007929.1 COG3613 [F] Nucleoside 2-deoxyribosyltransferase; nucleoside deoxyribosyltransferase 1732252 3976420 LSL_1643 Lactobacillus salivarius UCC118 nucleoside deoxyribosyltransferase YP_536528.1 1731785 D 364254 CDS YP_536529.1 90962613 3976421 1732323..1733030 1 NC_007929.1 COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance); branched chain amino acid ABC transporter 1733030 azlC 3976421 azlC Lactobacillus salivarius UCC118 branched chain amino acid ABC transporter YP_536529.1 1732323 D 364254 CDS YP_536530.1 90962614 3976989 1733017..1733343 1 NC_007929.1 COG0344 [S] Predicted membrane protein; branched chain amino acid ABC transporter 1733343 3976989 LSL_1645 Lactobacillus salivarius UCC118 branched chain amino acid ABC transporter YP_536530.1 1733017 D 364254 CDS YP_536531.1 90962615 3976990 complement(1733396..1733878) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; MarR family transcriptional regulator 1733878 3976990 LSL_1646 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_536531.1 1733396 R 364254 CDS YP_536532.1 90962616 3976991 complement(1733912..1734691) 1 NC_007929.1 COG1491 [J] Predicted RNA-binding protein; hypothetical protein 1734691 3976991 LSL_1647 Lactobacillus salivarius UCC118 hypothetical protein YP_536532.1 1733912 R 364254 CDS YP_536533.1 90962617 3976992 complement(1734886..1736031) 1 NC_007929.1 COG0582 [L] Integrase; phage integrase 1736031 xerC 3976992 xerC Lactobacillus salivarius UCC118 phage integrase YP_536533.1 1734886 R 364254 CDS YP_536534.1 90962618 3976993 complement(1736463..1737266) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; Cro/CI family transcriptional regulator 1737266 3976993 LSL_1649 Lactobacillus salivarius UCC118 Cro/CI family transcriptional regulator YP_536534.1 1736463 R 364254 CDS YP_536535.1 90962619 3976994 1737629..1738444 1 NC_007929.1 antirepressor 1738444 3976994 LSL_1650 Lactobacillus salivarius UCC118 antirepressor YP_536535.1 1737629 D 364254 CDS YP_536536.1 90962620 3976995 1738547..1738852 1 NC_007929.1 hypothetical protein 1738852 3976995 LSL_1651 Lactobacillus salivarius UCC118 hypothetical protein YP_536536.1 1738547 D 364254 CDS YP_536537.1 90962621 3976996 1738867..1739079 1 NC_007929.1 hypothetical protein 1739079 3976996 LSL_1652 Lactobacillus salivarius UCC118 hypothetical protein YP_536537.1 1738867 D 364254 CDS YP_536538.1 90962622 3976997 1739076..1739408 1 NC_007929.1 hypothetical protein 1739408 3976997 LSL_1653 Lactobacillus salivarius UCC118 hypothetical protein YP_536538.1 1739076 D 364254 CDS YP_536539.1 90962623 3976998 1739411..1739530 1 NC_007929.1 hypothetical protein 1739530 3976998 LSL_1654 Lactobacillus salivarius UCC118 hypothetical protein YP_536539.1 1739411 D 364254 CDS YP_536540.1 90962624 3976999 1739662..1740012 1 NC_007929.1 hypothetical protein 1740012 3976999 LSL_1655 Lactobacillus salivarius UCC118 hypothetical protein YP_536540.1 1739662 D 364254 CDS YP_536541.1 90962625 3977000 1740027..1740452 1 NC_007929.1 hypothetical protein 1740452 3977000 LSL_1656 Lactobacillus salivarius UCC118 hypothetical protein YP_536541.1 1740027 D 364254 CDS YP_536542.1 90962626 3977001 1740458..1741228 1 NC_007929.1 hypothetical protein 1741228 3977001 LSL_1657 Lactobacillus salivarius UCC118 hypothetical protein YP_536542.1 1740458 D 364254 CDS YP_536543.1 90962627 3977002 1741243..1742637 1 NC_007929.1 COG0433 [R] Predicted ATPase; DNA primase 1742637 3977002 LSL_1658 Lactobacillus salivarius UCC118 DNA primase YP_536543.1 1741243 D 364254 CDS YP_536544.1 90962628 3977003 1742930..1743238 1 NC_007929.1 hypothetical protein 1743238 3977003 LSL_1659 Lactobacillus salivarius UCC118 hypothetical protein YP_536544.1 1742930 D 364254 CDS YP_536545.1 90962629 3977004 1743297..1743737 1 NC_007929.1 hypothetical protein 1743737 3977004 LSL_1660 Lactobacillus salivarius UCC118 hypothetical protein YP_536545.1 1743297 D 364254 CDS YP_536546.1 90962630 3977005 1743744..1743959 1 NC_007929.1 hypothetical protein 1743959 3977005 LSL_1661 Lactobacillus salivarius UCC118 hypothetical protein YP_536546.1 1743744 D 364254 CDS YP_536547.1 90962631 3977006 1743973..1744083 1 NC_007929.1 hypothetical protein 1744083 3977006 LSL_1662 Lactobacillus salivarius UCC118 hypothetical protein YP_536547.1 1743973 D 364254 CDS YP_536548.1 90962632 3976628 1744055..1744237 1 NC_007929.1 hypothetical protein 1744237 3976628 LSL_1663 Lactobacillus salivarius UCC118 hypothetical protein YP_536548.1 1744055 D 364254 CDS YP_536549.1 90962633 3976629 1744198..1744314 1 NC_007929.1 hypothetical protein 1744314 3976629 LSL_1664 Lactobacillus salivarius UCC118 hypothetical protein YP_536549.1 1744198 D 364254 CDS YP_536550.1 90962634 3976630 1744445..1744636 1 NC_007929.1 hypothetical protein 1744636 3976630 LSL_1665 Lactobacillus salivarius UCC118 hypothetical protein YP_536550.1 1744445 D 364254 CDS YP_536551.1 90962635 3976631 1744651..1744902 1 NC_007929.1 hypothetical protein 1744902 3976631 LSL_1666 Lactobacillus salivarius UCC118 hypothetical protein YP_536551.1 1744651 D 364254 CDS YP_536552.1 90962636 3976632 complement(1746394..1747008) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 1747008 3976632 LSL_1667 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_536552.1 1746394 R 364254 CDS YP_536553.1 90962637 3976633 1747364..1747921 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1747921 3976633 LSL_1668 Lactobacillus salivarius UCC118 hypothetical protein YP_536553.1 1747364 D 364254 CDS YP_536554.1 90962638 3976634 1748052..1749953 1 NC_007929.1 COG3590 [O] Predicted metalloendopeptidase; oligoendopeptidase O 1749953 pepO 3976634 pepO Lactobacillus salivarius UCC118 oligoendopeptidase O YP_536554.1 1748052 D 364254 CDS YP_536555.1 90962639 3976635 1750082..1750927 1 NC_007929.1 COG0115 [EH] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; D-alanine aminotransferase 1750927 3976635 LSL_1670 Lactobacillus salivarius UCC118 D-alanine aminotransferase YP_536555.1 1750082 D 364254 CDS YP_536556.1 90962640 3976636 complement(1750964..1751557) 1 NC_007929.1 COG0392 [S] Predicted integral membrane protein; hypothetical protein 1751557 3976636 LSL_1671 Lactobacillus salivarius UCC118 hypothetical protein YP_536556.1 1750964 R 364254 CDS YP_536557.1 90962641 3976638 1752569..1753069 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1753069 3976638 LSL_1672 Lactobacillus salivarius UCC118 hypothetical protein YP_536557.1 1752569 D 364254 CDS YP_536558.1 90962642 3976639 complement(1753481..1753999) 1 NC_007929.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 1753999 wecD 3976639 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536558.1 1753481 R 364254 CDS YP_536559.1 90962643 3976641 complement(1754774..1755205) 1 NC_007929.1 COG2957 [E] Peptidylarginine deiminase and related enzymes; agmatine deiminase 1755205 3976641 LSL_1674 Lactobacillus salivarius UCC118 agmatine deiminase YP_536559.1 1754774 R 364254 CDS YP_536560.1 90962644 3976642 complement(1755378..1757948) 1 NC_007929.1 COG0577 [V] ABC-type antimicrobial peptide transport system, permease component; ABC transporter permease 1757948 3976642 LSL_1675 Lactobacillus salivarius UCC118 ABC transporter permease YP_536560.1 1755378 R 364254 CDS YP_536561.1 90962645 3976643 complement(1757959..1758660) 1 NC_007929.1 COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component; amino acid ABC transporter ATP-binding protein 1758660 3976643 LSL_1676 Lactobacillus salivarius UCC118 amino acid ABC transporter ATP-binding protein YP_536561.1 1757959 R 364254 CDS YP_536562.1 90962646 3976644 1758783..1759340 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 1759340 3976644 LSL_1677 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_536562.1 1758783 D 364254 CDS YP_536563.1 90962647 3976645 1759530..1759820 1 NC_007929.1 hypothetical protein 1759820 3976645 LSL_1678 Lactobacillus salivarius UCC118 hypothetical protein YP_536563.1 1759530 D 364254 CDS YP_536564.1 90962648 3977115 1761082..1762980 1 NC_007929.1 COG5651 [N] PPE-repeat proteins; PPE repeat-containing protein 1762980 3977115 LSL_1679 Lactobacillus salivarius UCC118 PPE repeat-containing protein YP_536564.1 1761082 D 364254 CDS YP_536565.1 90962649 3977117 complement(1763213..1763692) 1 NC_007929.1 glyoxalase 1763692 3977117 LSL_1680 Lactobacillus salivarius UCC118 glyoxalase YP_536565.1 1763213 R 364254 CDS YP_536566.1 90962650 3977118 complement(1763721..1764560) 1 NC_007929.1 COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; 2,5-diketo-D-gluconic acid reductase 1764560 3977118 LSL_1681 Lactobacillus salivarius UCC118 2,5-diketo-D-gluconic acid reductase YP_536566.1 1763721 R 364254 CDS YP_536567.1 90962651 3977119 1764691..1765047 1 NC_007929.1 COG0640 [K] Predicted transcriptional regulators; MarR family transcriptional regulator 1765047 3977119 LSL_1682 Lactobacillus salivarius UCC118 MarR family transcriptional regulator YP_536567.1 1764691 D 364254 CDS YP_536568.1 90962652 3977120 complement(1765136..1765900) 1 NC_007929.1 COG0390 [R] ABC-type uncharacterized transport system, permease component; hypothetical protein 1765900 3977120 LSL_1683 Lactobacillus salivarius UCC118 hypothetical protein YP_536568.1 1765136 R 364254 CDS YP_536569.1 90962653 3977121 complement(1765881..1766534) 1 NC_007929.1 COG1101 [R] ABC-type uncharacterized transport system, ATPase component; ABC transporter, ATP-binding protein 1766534 3977121 LSL_1684 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536569.1 1765881 R 364254 CDS YP_536570.1 90962654 3977122 complement(1766684..1767910) 1 NC_007929.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; major facilitator superfamily permease 1767910 3977122 LSL_1685 Lactobacillus salivarius UCC118 major facilitator superfamily permease YP_536570.1 1766684 R 364254 CDS YP_536571.1 90962655 3977123 1768192..1768686 1 NC_007929.1 COG0450 [O] Peroxiredoxin; thioredoxin peroxidase 1768686 3977123 LSL_1686 Lactobacillus salivarius UCC118 thioredoxin peroxidase YP_536571.1 1768192 D 364254 CDS YP_536572.1 90962656 3977124 complement(1768746..1769270) 1 NC_007929.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 1769270 3977124 LSL_1687 Lactobacillus salivarius UCC118 hypothetical protein YP_536572.1 1768746 R 364254 CDS YP_536573.1 90962657 3977125 complement(1769289..1769882) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; TetR family transcriptional regulator 1769882 3977125 LSL_1688 Lactobacillus salivarius UCC118 TetR family transcriptional regulator YP_536573.1 1769289 R 364254 CDS YP_536574.1 90962658 3977126 complement(1770073..1771020) 1 NC_007929.1 COG2837 [P] Predicted iron-dependent peroxidase; Dyp-type peroxidase family protein 1771020 3977126 LSL_1689 Lactobacillus salivarius UCC118 Dyp-type peroxidase family protein YP_536574.1 1770073 R 364254 CDS YP_536575.1 90962659 3977127 complement(1771106..1771564) 1 NC_007929.1 hypothetical protein 1771564 3977127 LSL_1690 Lactobacillus salivarius UCC118 hypothetical protein YP_536575.1 1771106 R 364254 CDS YP_536576.1 90962660 3977128 complement(1771561..1771995) 1 NC_007929.1 COG3279 [KT] Response regulator of the LytR/AlgR family; hypothetical protein 1771995 3977128 LSL_1691 Lactobacillus salivarius UCC118 hypothetical protein YP_536576.1 1771561 R 364254 CDS YP_536577.1 90962661 3977129 complement(1772148..1773071) 1 NC_007929.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase 1773071 mmuM 3977129 mmuM Lactobacillus salivarius UCC118 homocysteine methyltransferase YP_536577.1 1772148 R 364254 CDS YP_536578.1 90962662 3977130 1773185..1774552 1 NC_007929.1 COG0531 [E] Amino acid transporters; amino acid permease 1774552 3977130 LSL_1693 Lactobacillus salivarius UCC118 amino acid permease YP_536578.1 1773185 D 364254 CDS YP_536579.1 90962663 3977131 1774586..1775026 1 NC_007929.1 COG0344 [S] Predicted membrane protein; phosphate-starvation-inducible protein PsiE 1775026 3977131 LSL_1694 Lactobacillus salivarius UCC118 phosphate-starvation-inducible protein PsiE YP_536579.1 1774586 D 364254 CDS YP_536580.1 90962664 3977132 complement(1775110..1776057) 1 NC_007929.1 COG4608 [E] ABC-type oligopeptide transport system, ATPase component; oligopeptide transport ATP-binding protein oppF 1776057 3977132 LSL_1695 Lactobacillus salivarius UCC118 oligopeptide transport ATP-binding protein oppF YP_536580.1 1775110 R 364254 CDS YP_536581.1 90962665 3976440 complement(1776076..1777119) 1 NC_007929.1 COG0444 [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; oligopeptide transport ATP-binding protein 1777119 oppD 3976440 oppD Lactobacillus salivarius UCC118 oligopeptide transport ATP-binding protein YP_536581.1 1776076 R 364254 CDS YP_536582.1 90962666 3976441 complement(1777130..1778158) 1 NC_007929.1 COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transport system permease 1778158 oppC 3976441 oppC Lactobacillus salivarius UCC118 oligopeptide transport system permease YP_536582.1 1777130 R 364254 CDS YP_536583.1 90962667 3976442 complement(1778158..1779093) 1 NC_007929.1 COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; oligopeptide transport system permease 1779093 oppB 3976442 oppB Lactobacillus salivarius UCC118 oligopeptide transport system permease YP_536583.1 1778158 R 364254 CDS YP_536584.1 90962668 3976443 complement(1779229..1780842) 1 NC_007929.1 COG4166 [E] ABC-type oligopeptide transport system, periplasmic component; oligopeptide-binding protein oppA 1780842 3976443 LSL_1699 Lactobacillus salivarius UCC118 oligopeptide-binding protein oppA YP_536584.1 1779229 R 364254 CDS YP_536585.1 90962669 3976444 complement(1781344..1782744) 1 NC_007929.1 COG1113 [E] Gamma-aminobutyrate permease and related permeases; amino acid permease 1782744 3976444 LSL_1700 Lactobacillus salivarius UCC118 amino acid permease YP_536585.1 1781344 R 364254 CDS YP_536586.1 90962670 3976445 complement(1783118..1783675) 1 NC_007929.1 COG0231 [J] Translation elongation factor P (EF-P); translation initiation factor 5A (eIF-5A); protein translation elongation factor P 1783675 efp 3976445 efp Lactobacillus salivarius UCC118 protein translation elongation factor P YP_536586.1 1783118 R 364254 CDS YP_536587.1 90962671 3976446 complement(1783827..1784627) 1 NC_007929.1 COG0561 [R] Predicted hydrolases of the HAD superfamily; HAD superfamily hydrolase 1784627 3976446 LSL_1702 Lactobacillus salivarius UCC118 HAD superfamily hydrolase YP_536587.1 1783827 R 364254 CDS YP_536588.1 90962672 3976447 complement(1784646..1785302) 1 NC_007929.1 COG0406 [G] Fructose-2,6-bisphosphatase; phosphoglycerate mutase 1785302 gpmB 3976447 gpmB Lactobacillus salivarius UCC118 phosphoglycerate mutase YP_536588.1 1784646 R 364254 CDS YP_536589.1 90962673 3976448 complement(1785421..1787331) 1 NC_007929.1 COG0474 [P] Cation transport ATPase; cation transport ATPases 1787331 3976448 LSL_1704 Lactobacillus salivarius UCC118 cation transport ATPases YP_536589.1 1785421 R 364254 CDS YP_536590.1 90962674 3976449 complement(1787331..1787594) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1787594 3976449 LSL_1705 Lactobacillus salivarius UCC118 hypothetical protein YP_536590.1 1787331 R 364254 CDS YP_536591.1 90962675 3976450 complement(1787611..1787985) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1787985 3976450 LSL_1706 Lactobacillus salivarius UCC118 hypothetical protein YP_536591.1 1787611 R 364254 CDS YP_536592.1 90962676 3976451 complement(1788107..1789249) 1 NC_007929.1 COG1929 [G] Glycerate kinase; glycerate kinase 1789249 3976451 LSL_1707 Lactobacillus salivarius UCC118 glycerate kinase YP_536592.1 1788107 R 364254 CDS YP_536593.1 90962677 3976452 1789491..1789850 1 NC_007929.1 COG0583 [K] Transcriptional regulator; ArsR family transcriptional regulator 1789850 3976452 LSL_1708 Lactobacillus salivarius UCC118 ArsR family transcriptional regulator YP_536593.1 1789491 D 364254 CDS YP_536594.1 90962678 3976453 1789850..1790539 1 NC_007929.1 COG0693 [R] intracellular protease/amidase; ThiJ/PfpI family protein 1790539 3976453 LSL_1709 Lactobacillus salivarius UCC118 ThiJ/PfpI family protein YP_536594.1 1789850 D 364254 CDS YP_536595.1 90962679 3976454 1790654..1792468 1 NC_007929.1 COG0584 [C] Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 1792468 3976454 LSL_1710 Lactobacillus salivarius UCC118 glycerophosphodiester phosphodiesterase YP_536595.1 1790654 D 364254 CDS YP_536596.1 90962680 3976455 complement(1792554..1793546) 1 NC_007929.1 COG1522 [K] Transcriptional regulators; LacI family transcription regulator 1793546 3976455 LSL_1711 Lactobacillus salivarius UCC118 LacI family transcription regulator YP_536596.1 1792554 R 364254 CDS YP_536597.1 90962681 3976456 complement(1793548..1795206) 1 NC_007929.1 COG0366 [G] Glycosidases; oligo-1,6-glucosidase 1795206 3976456 LSL_1712 Lactobacillus salivarius UCC118 oligo-1,6-glucosidase YP_536597.1 1793548 R 364254 CDS YP_536598.1 90962682 3976457 complement(1795199..1795624) 1 NC_007929.1 COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, N-acetylgalactosamine-specific IIA component 1795624 3976457 LSL_1713 Lactobacillus salivarius UCC118 PTS system, N-acetylgalactosamine-specific IIA component YP_536598.1 1795199 R 364254 CDS YP_536599.1 90962683 3976458 complement(1795651..1796460) 1 NC_007929.1 COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 1796460 3976458 LSL_1714 Lactobacillus salivarius UCC118 PTS system, mannose-specific IID component YP_536599.1 1795651 R 364254 CDS YP_536600.1 90962684 3977354 complement(1796453..1797253) 1 NC_007929.1 COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 1797253 3977354 LSL_1715 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIC component YP_536600.1 1796453 R 364254 CDS YP_536601.1 90962685 3977355 complement(1797258..1797743) 1 NC_007929.1 COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, mannose-specific IIAB component 1797743 3977355 LSL_1716 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIAB component YP_536601.1 1797258 R 364254 CDS YP_536602.1 90962686 3977356 1798177..1798983 1 NC_007929.1 COG1897 [E] Homoserine trans-succinylase; homoserine O-succinyltransferase 1798983 metA 3977356 metA Lactobacillus salivarius UCC118 homoserine O-succinyltransferase YP_536602.1 1798177 D 364254 CDS YP_536603.1 90962687 3977357 1798996..1799919 1 NC_007929.1 COG0031 [E] Cysteine synthase; cysteine synthase 1799919 cysK 3977357 cysK Lactobacillus salivarius UCC118 cysteine synthase YP_536603.1 1798996 D 364254 CDS YP_536604.1 90962688 3977360 complement(1801589..1802332) 1 NC_007929.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 1802332 3977360 LSL_1719 Lactobacillus salivarius UCC118 hypothetical protein YP_536604.1 1801589 R 364254 CDS YP_536605.1 90962689 3977361 complement(1802359..1803093) 1 NC_007929.1 hypothetical protein 1803093 3977361 LSL_1720 Lactobacillus salivarius UCC118 hypothetical protein YP_536605.1 1802359 R 364254 CDS YP_536606.1 90962690 3977362 1803210..1803719 1 NC_007929.1 COG1607 [I] acyl-CoA hydrolase; acyl-CoA hydrolase 1803719 3977362 LSL_1721 Lactobacillus salivarius UCC118 acyl-CoA hydrolase YP_536606.1 1803210 D 364254 CDS YP_536607.1 90962691 3977363 1803877..1804812 1 NC_007929.1 COG0492 [O] Thioredoxin reductase; thioredoxin reductase 1804812 trxB 3977363 trxB Lactobacillus salivarius UCC118 thioredoxin reductase YP_536607.1 1803877 D 364254 CDS YP_536608.1 90962692 3977364 complement(1804845..1804967) 1 NC_007929.1 hypothetical protein 1804967 3977364 LSL_1723 Lactobacillus salivarius UCC118 hypothetical protein YP_536608.1 1804845 R 364254 CDS YP_536609.1 90962693 3977365 complement(1805385..1806677) 1 NC_007929.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1806677 purA 3977365 purA Lactobacillus salivarius UCC118 adenylosuccinate synthetase YP_536609.1 1805385 R 364254 CDS YP_536610.1 90962694 3977366 complement(1806914..1807486) 1 NC_007929.1 COG0716 [C] Flavodoxins; hypothetical protein 1807486 3977366 LSL_1725 Lactobacillus salivarius UCC118 hypothetical protein YP_536610.1 1806914 R 364254 CDS YP_536611.1 90962695 3977367 complement(1807560..1808951) 1 NC_007929.1 COG0305 [L] Replicative DNA helicase; replicative DNA helicase 1808951 dnaB 3977367 dnaB Lactobacillus salivarius UCC118 replicative DNA helicase YP_536611.1 1807560 R 364254 CDS YP_536612.1 90962696 3977368 complement(1809124..1809573) 1 NC_007929.1 COG0359 [J] Ribosomal protein L9; 50S ribosomal protein L9P 1809573 rplI 3977368 rplI Lactobacillus salivarius UCC118 50S ribosomal protein L9P YP_536612.1 1809124 R 364254 CDS YP_536613.1 90962697 3977369 complement(1809587..1811620) 1 NC_007929.1 COG3887 [T] Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain; phosphoesterase, DHH family protein 1811620 3977369 LSL_1728 Lactobacillus salivarius UCC118 phosphoesterase, DHH family protein YP_536613.1 1809587 R 364254 CDS YP_536614.1 90962698 3977370 1811803..1812570 1 NC_007929.1 hypothetical protein 1812570 3977370 LSL_1729 Lactobacillus salivarius UCC118 hypothetical protein YP_536614.1 1811803 D 364254 CDS YP_536615.1 90962699 3977522 1819718..1820074 1 NC_007929.1 hypothetical protein 1820074 3977522 LSL_1730 Lactobacillus salivarius UCC118 hypothetical protein YP_536615.1 1819718 D 364254 CDS YP_536616.1 90962700 3977523 1820217..1821017 1 NC_007929.1 COG0726 [G] Predicted xylanase/chitin deacetylase; polysaccharide deacetylase 1821017 3977523 LSL_1731 Lactobacillus salivarius UCC118 polysaccharide deacetylase YP_536616.1 1820217 D 364254 CDS YP_536617.1 90962701 3977524 1821043..1821552 1 NC_007929.1 hypothetical protein 1821552 3977524 LSL_1732 Lactobacillus salivarius UCC118 hypothetical protein YP_536617.1 1821043 D 364254 CDS YP_536618.1 90962702 3977525 complement(1821643..1822521) 1 NC_007929.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 1822521 3977525 LSL_1733 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_536618.1 1821643 R 364254 CDS YP_536619.1 90962703 3977526 1822630..1823652 1 NC_007929.1 COG0344 [S] Predicted membrane protein; hypothetical protein 1823652 3977526 LSL_1734 Lactobacillus salivarius UCC118 hypothetical protein YP_536619.1 1822630 D 364254 CDS YP_536620.1 90962704 3977527 complement(1823730..1824977) 1 NC_007929.1 COG1972 [F] Nucleoside permease; nucleoside transport protein 1824977 nupC 3977527 nupC Lactobacillus salivarius UCC118 nucleoside transport protein YP_536620.1 1823730 R 364254 CDS YP_536621.1 90962705 3977528 complement(1825230..1826069) 1 NC_007929.1 COG0706 [U] Preprotein translocase subunit YidC; 60 kDa inner membrane protein 1826069 yidC 3977528 yidC Lactobacillus salivarius UCC118 60 kDa inner membrane protein YP_536621.1 1825230 R 364254 CDS YP_536622.1 90962706 3977529 complement(1826091..1826432) 1 NC_007929.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 1826432 rnpA 3977529 rnpA Lactobacillus salivarius UCC118 ribonuclease P YP_536622.1 1826091 R 364254 CDS YP_536623.1 90962707 3977530 complement(1826490..1826624) 1 NC_007929.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1826624 rpmH 3977530 rpmH Lactobacillus salivarius UCC118 50S ribosomal protein L34 YP_536623.1 1826490 R 364254 CDS YP_536624.1 90962709 3978414 1..765 1 NC_007930.1 COG5527 [L] Protein involved in initiation of plasmid replication; replication protein 765 3978414 LSL_1739 Lactobacillus salivarius UCC118 replication protein YP_536624.1 1 D 362948 CDS YP_536625.1 90962710 3978415 1051..2043 1 NC_007930.1 putative replication protein 2043 3978415 LSL_1740 Lactobacillus salivarius UCC118 putative replication protein YP_536625.1 1051 D 362948 CDS YP_536626.1 90962711 3978491 5306..6118 1 NC_007930.1 COG0455 [D] ATPases involved in chromosome partitioning; chromosome partitioning ATPase 6118 3978491 LSL_1741 Lactobacillus salivarius UCC118 chromosome partitioning ATPase YP_536626.1 5306 D 362948 CDS YP_536627.1 90962712 3978492 6118..6453 1 NC_007930.1 hypothetical protein 6453 3978492 LSL_1742 Lactobacillus salivarius UCC118 hypothetical protein YP_536627.1 6118 D 362948 CDS YP_536628.1 90962713 3978493 6913..8130 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS607 family transposase 8130 3978493 LSL_1743 Lactobacillus salivarius UCC118 IS607 family transposase YP_536628.1 6913 D 362948 CDS YP_536629.1 90962714 3978494 8298..8630 1 NC_007930.1 hypothetical protein 8630 3978494 LSL_1744 Lactobacillus salivarius UCC118 hypothetical protein YP_536629.1 8298 D 362948 CDS YP_536630.1 90962715 3978495 complement(8751..11285) 1 NC_007930.1 COG0308 [E] Aminopeptidase N; aminopeptidase N 11285 pepN 3978495 pepN Lactobacillus salivarius UCC118 aminopeptidase N YP_536630.1 8751 R 362948 CDS YP_536631.1 90962716 3978496 complement(12146..12994) 1 NC_007930.1 COG0656 [R] Aldo/keto reductases, related to diketogulonate reductase; oxidoreductase 12994 3978496 LSL_1746 Lactobacillus salivarius UCC118 oxidoreductase YP_536631.1 12146 R 362948 CDS YP_536632.1 90962717 3978497 complement(13205..13828) 1 NC_007930.1 COG2095 [U] Multiple antibiotic transporter; hypothetical protein 13828 3978497 LSL_1747 Lactobacillus salivarius UCC118 hypothetical protein YP_536632.1 13205 R 362948 CDS YP_536633.1 90962718 3978498 14190..15311 1 NC_007930.1 COG1062 [C] Zn-dependent alcohol dehydrogenases, class III; Aryl-alcohol dehydrogenase 15311 adhC 3978498 adhC Lactobacillus salivarius UCC118 Aryl-alcohol dehydrogenase YP_536633.1 14190 D 362948 CDS YP_536634.1 90962719 3978499 complement(15417..16067) 1 NC_007930.1 hypothetical protein 16067 3978499 LSL_1749 Lactobacillus salivarius UCC118 hypothetical protein YP_536634.1 15417 R 362948 CDS YP_536635.1 90962720 3978500 complement(16070..17089) 1 NC_007930.1 COG2207 [K] AraC-type DNA-binding domain-containing proteins; AraC family transcriptional regulator 17089 3978500 LSL_1750 Lactobacillus salivarius UCC118 AraC family transcriptional regulator YP_536635.1 16070 R 362948 CDS YP_536636.1 90962721 3978501 17357..18616 1 NC_007930.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; L-rhamnose-proton symport 18616 proP 3978501 proP Lactobacillus salivarius UCC118 L-rhamnose-proton symport YP_536636.1 17357 D 362948 CDS YP_536637.1 90962722 3978502 18637..20094 1 NC_007930.1 COG1070 [G] Sugar (pentulose and hexulose) kinases; rhamnulokinase 20094 rhaB 3978502 rhaB Lactobacillus salivarius UCC118 rhamnulokinase YP_536637.1 18637 D 362948 CDS YP_536638.1 90962723 3978503 20099..20425 1 NC_007930.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 20425 3978503 LSL_1753 Lactobacillus salivarius UCC118 hypothetical protein YP_536638.1 20099 D 362948 CDS YP_536639.1 90962724 3978504 20438..21703 1 NC_007930.1 catalyzes the formation of L-rhamnulose from L-rhamnose; L-rhamnose isomerase 21703 3978504 LSL_1754 Lactobacillus salivarius UCC118 L-rhamnose isomerase YP_536639.1 20438 D 362948 CDS YP_536640.1 90962725 3978505 21793..22608 1 NC_007930.1 COG0235 [G] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; rhamnulose-1-phosphate aldolase 22608 araD 3978505 araD Lactobacillus salivarius UCC118 rhamnulose-1-phosphate aldolase YP_536640.1 21793 D 362948 CDS YP_536641.1 90962726 3978506 complement(22914..24629) 1 NC_007930.1 hypothetical protein 24629 3978506 LSL_1756 Lactobacillus salivarius UCC118 hypothetical protein YP_536641.1 22914 R 362948 CDS YP_536642.1 90962727 3978507 25066..25950 1 NC_007930.1 hypothetical protein 25950 3978507 LSL_1757 Lactobacillus salivarius UCC118 hypothetical protein YP_536642.1 25066 D 362948 CDS YP_536643.1 90962728 3978508 complement(26117..27043) 1 NC_007930.1 COG0582 [L] Integrase; DNA integration/recombination/inversion protein 27043 xerC 3978508 xerC Lactobacillus salivarius UCC118 DNA integration/recombination/inversion protein YP_536643.1 26117 R 362948 CDS YP_536644.1 90962729 3978509 27261..27818 1 NC_007930.1 hypothetical protein 27818 3978509 LSL_1758b Lactobacillus salivarius UCC118 hypothetical protein YP_536644.1 27261 D 362948 CDS YP_536645.1 90962730 3978474 27820..29217 1 NC_007930.1 modification subunit 29217 3978474 LSL_1758c Lactobacillus salivarius UCC118 modification subunit YP_536645.1 27820 D 362948 CDS YP_536646.1 90962731 3978475 29230..29481 1 NC_007930.1 hypothetical protein 29481 3978475 LSL_1758d Lactobacillus salivarius UCC118 hypothetical protein YP_536646.1 29230 D 362948 CDS YP_536647.1 90962732 3978479 35658..38285 1 NC_007930.1 COG0718 [S] Uncharacterized protein conserved in bacteria; Type III restriction-modification system restriction subunit 38285 3978479 LSL_1759 Lactobacillus salivarius UCC118 Type III restriction-modification system restriction subunit YP_536647.1 35658 D 362948 CDS YP_536648.1 90962733 3978480 38418..41603 1 NC_007930.1 COG1196 [D] Chromosome segregation ATPases; hypothetical protein 41603 3978480 LSL_1760 Lactobacillus salivarius UCC118 hypothetical protein YP_536648.1 38418 D 362948 CDS YP_536649.1 90962734 3978481 41703..42041 1 NC_007930.1 hypothetical protein 42041 3978481 LSL_1761 Lactobacillus salivarius UCC118 hypothetical protein YP_536649.1 41703 D 362948 CDS YP_536650.1 90962735 3978482 42081..44138 1 NC_007930.1 hypothetical protein 44138 3978482 LSL_1762 Lactobacillus salivarius UCC118 hypothetical protein YP_536650.1 42081 D 362948 CDS YP_536651.1 90962736 3978483 44135..44698 1 NC_007930.1 hypothetical protein 44698 3978483 LSL_1763 Lactobacillus salivarius UCC118 hypothetical protein YP_536651.1 44135 D 362948 CDS YP_536652.1 90962737 3978484 44774..47551 1 NC_007930.1 COG0464 [O] ATPases of the AAA+ class; ATPase of the AAA+ class 47551 3978484 LSL_1764 Lactobacillus salivarius UCC118 ATPase of the AAA+ class YP_536652.1 44774 D 362948 CDS YP_536653.1 90962738 3978485 47582..48832 1 NC_007930.1 hypothetical protein 48832 3978485 LSL_1765 Lactobacillus salivarius UCC118 hypothetical protein YP_536653.1 47582 D 362948 CDS YP_536654.1 90962739 3978486 48966..49082 1 NC_007930.1 hypothetical protein 49082 3978486 LSL_1766 Lactobacillus salivarius UCC118 hypothetical protein YP_536654.1 48966 D 362948 CDS YP_536655.1 90962740 3978487 complement(49367..50761) 1 NC_007930.1 COG0531 [E] Amino acid transporters; alanine permease 50761 potE 3978487 potE Lactobacillus salivarius UCC118 alanine permease YP_536655.1 49367 R 362948 CDS YP_536656.1 90962741 3978488 complement(50801..51904) 1 NC_007930.1 COG0686 [E] Alanine dehydrogenase; alanine dehydrogenase 51904 ald 3978488 ald Lactobacillus salivarius UCC118 alanine dehydrogenase YP_536656.1 50801 R 362948 CDS YP_536657.1 90962742 3978489 complement(52433..53200) 1 NC_007930.1 COG0718 [S] Uncharacterized protein conserved in bacteria; hypothetical protein 53200 3978489 LSL_1769 Lactobacillus salivarius UCC118 hypothetical protein YP_536657.1 52433 R 362948 CDS YP_536658.1 90962743 3978490 complement(53287..53796) 1 NC_007930.1 hypothetical protein 53796 3978490 LSL_1770 Lactobacillus salivarius UCC118 hypothetical protein YP_536658.1 53287 R 362948 CDS YP_536659.1 90962744 3978286 53945..54787 1 NC_007930.1 COG0718 [S] Uncharacterized protein conserved in bacteria; DegV family protein 54787 3978286 LSL_1771 Lactobacillus salivarius UCC118 DegV family protein YP_536659.1 53945 D 362948 CDS YP_536660.1 90962745 3978287 54961..55395 1 NC_007930.1 COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases; acetyltransferase 55395 wecD 3978287 wecD Lactobacillus salivarius UCC118 acetyltransferase YP_536660.1 54961 D 362948 CDS YP_536661.1 90962746 3978288 55468..56421 1 NC_007930.1 hypothetical protein 56421 3978288 LSL_1773 Lactobacillus salivarius UCC118 hypothetical protein YP_536661.1 55468 D 362948 CDS YP_536662.1 90962747 3978289 complement(56488..56763) 1 NC_007930.1 COG0776 [L] Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 56763 himA 3978289 himA Lactobacillus salivarius UCC118 DNA-binding protein HU YP_536662.1 56488 R 362948 CDS YP_536663.1 90962748 3978291 62003..62206 1 NC_007930.1 hypothetical protein 62206 3978291 LSL_1775 Lactobacillus salivarius UCC118 hypothetical protein YP_536663.1 62003 D 362948 CDS YP_536664.1 90962749 3978292 62267..62521 1 NC_007930.1 hypothetical protein 62521 3978292 LSL_1776 Lactobacillus salivarius UCC118 hypothetical protein YP_536664.1 62267 D 362948 CDS YP_536665.1 90962750 3978293 62535..62702 1 NC_007930.1 hypothetical protein 62702 3978293 LSL_1777 Lactobacillus salivarius UCC118 hypothetical protein YP_536665.1 62535 D 362948 CDS YP_536666.1 90962751 3978294 62874..63569 1 NC_007930.1 COG1018 [C] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; hypothetical protein 63569 3978294 LSL_1778 Lactobacillus salivarius UCC118 hypothetical protein YP_536666.1 62874 D 362948 CDS YP_536667.1 90962752 3978295 complement(63727..64158) 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 64158 3978295 LSL_1779 Lactobacillus salivarius UCC118 IS200/IS605 family transposase YP_536667.1 63727 R 362948 CDS YP_536668.1 90962753 3978296 64258..65535 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS200/IS605 family transposase 65535 3978296 LSL_1780 Lactobacillus salivarius UCC118 IS200/IS605 family transposase YP_536668.1 64258 D 362948 CDS YP_536669.1 90962754 3978297 65875..66447 1 NC_007930.1 COG0783 [P] DNA-binding ferritin-like protein (oxidative damage protectant); non-specific DNA-binding protein / Iron-binding ferritin-like antioxidant protein / ferroxidase 66447 dps 3978297 dps Lactobacillus salivarius UCC118 non-specific DNA-binding protein / Iron-binding ferritin-like antioxidant protein / ferroxidase YP_536669.1 65875 D 362948 CDS YP_536670.1 90962755 3978298 66592..67296 1 NC_007930.1 COG0664 [T] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Crp family transcriptional regulator 67296 3978298 LSL_1782 Lactobacillus salivarius UCC118 Crp family transcriptional regulator YP_536670.1 66592 D 362948 CDS YP_536671.1 90962756 3978301 68867..69100 1 NC_007930.1 COG2608 [P] Copper chaperone; hypothetical protein 69100 3978301 LSL_1784 Lactobacillus salivarius UCC118 hypothetical protein YP_536671.1 68867 D 362948 CDS YP_536672.1 90962757 3978302 complement(69114..69281) 1 NC_007930.1 hypothetical protein 69281 3978302 LSL_1785 Lactobacillus salivarius UCC118 hypothetical protein YP_536672.1 69114 R 362948 CDS YP_536673.1 90962758 3978303 69419..71323 1 NC_007930.1 COG0474 [P] Cation transport ATPase; lead, cadmium, zinc and mercury transporting ATPase 71323 zntA 3978303 zntA Lactobacillus salivarius UCC118 lead, cadmium, zinc and mercury transporting ATPase YP_536673.1 69419 D 362948 CDS YP_536674.1 90962759 3978304 71563..71844 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 71844 3978304 LSL_1787 Lactobacillus salivarius UCC118 IS3 family transposase YP_536674.1 71563 D 362948 CDS YP_536675.1 90962760 3978305 71919..72746 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS3 family transposase 72746 3978305 LSL_1788 Lactobacillus salivarius UCC118 IS3 family transposase YP_536675.1 71919 D 362948 CDS YP_536676.1 90962761 3978306 complement(73185..74384) 1 NC_007930.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; transport protein 74384 3978306 LSL_1789 Lactobacillus salivarius UCC118 transport protein YP_536676.1 73185 R 362948 CDS YP_536677.1 90962762 3978307 74697..75917 1 NC_007930.1 COG0477 [GEPR] Permeases of the major facilitator superfamily; transport protein 75917 3978307 LSL_1790 Lactobacillus salivarius UCC118 transport protein YP_536677.1 74697 D 362948 CDS YP_536678.1 90962763 3978308 complement(75969..76865) 1 NC_007930.1 COG0583 [K] Transcriptional regulator; LysR family transcriptional regulator 76865 3978308 LSL_1791 Lactobacillus salivarius UCC118 LysR family transcriptional regulator YP_536678.1 75969 R 362948 CDS YP_536679.1 90962764 3978309 77024..77860 1 NC_007930.1 COG1082 [G] Sugar phosphate isomerases/epimerases; hypothetical protein 77860 3978309 LSL_1792 Lactobacillus salivarius UCC118 hypothetical protein YP_536679.1 77024 D 362948 CDS YP_536680.1 90962765 3978310 77889..78716 1 NC_007930.1 COG1028 [IQR] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 2-deoxy-D-gluconate 3-dehydrogenase 78716 kduD 3978310 kduD Lactobacillus salivarius UCC118 2-deoxy-D-gluconate 3-dehydrogenase YP_536680.1 77889 D 362948 CDS YP_536681.1 90962766 3978311 78736..80451 1 NC_007930.1 COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 80451 sdhA 3978311 sdhA Lactobacillus salivarius UCC118 fumarate reductase flavoprotein subunit YP_536681.1 78736 D 362948 CDS YP_536682.1 90962767 3978312 80472..81347 1 NC_007930.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 81347 aroE 3978312 aroE Lactobacillus salivarius UCC118 shikimate 5-dehydrogenase YP_536682.1 80472 D 362948 CDS YP_536683.1 90962768 3978313 81360..82118 1 NC_007930.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase 82118 aroD 3978313 aroD Lactobacillus salivarius UCC118 3-dehydroquinate dehydratase YP_536683.1 81360 D 362948 CDS YP_536684.1 90962769 3978314 complement(82166..83263) 1 NC_007930.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS; site-specific tyrosine recombinase XerS 83263 xerS 3978314 xerS Lactobacillus salivarius UCC118 site-specific tyrosine recombinase XerS YP_536684.1 82166 R 362948 CDS YP_536685.1 90962770 3978315 83642..83899 1 NC_007930.1 hypothetical protein 83899 3978315 LSL_1798 Lactobacillus salivarius UCC118 hypothetical protein YP_536685.1 83642 D 362948 CDS YP_536686.1 90962771 3978316 83949..84182 1 NC_007930.1 hypothetical protein 84182 3978316 LSL_1799 Lactobacillus salivarius UCC118 hypothetical protein YP_536686.1 83949 D 362948 CDS YP_536687.1 90962772 3978317 84228..84452 1 NC_007930.1 hypothetical protein 84452 3978317 LSL_1800 Lactobacillus salivarius UCC118 hypothetical protein YP_536687.1 84228 D 362948 CDS YP_536688.1 90962773 3978318 84545..85495 1 NC_007930.1 COG3049 [M] Penicillin V acylase and related amidases; choloylglycine hydrolase 85495 3978318 LSL_1801 Lactobacillus salivarius UCC118 choloylglycine hydrolase YP_536688.1 84545 D 362948 CDS YP_536689.1 90962774 3978319 complement(85617..86414) 1 NC_007930.1 COG2365 [T] Protein tyrosine/serine phosphatase; protein tyrosine phosphatase 86414 3978319 LSL_1802 Lactobacillus salivarius UCC118 protein tyrosine phosphatase YP_536689.1 85617 R 362948 CDS YP_536690.1 90962775 3978320 complement(86487..87092) 1 NC_007930.1 COG2197 [TK] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two-component response regulator 87092 citB 3978320 citB Lactobacillus salivarius UCC118 two-component response regulator YP_536690.1 86487 R 362948 CDS YP_536691.1 90962776 3978321 complement(87095..88204) 1 NC_007930.1 COG0642 [T] Signal transduction histidine kinase; sensory transduction protein kinase 88204 baeS 3978321 baeS Lactobacillus salivarius UCC118 sensory transduction protein kinase YP_536691.1 87095 R 362948 CDS YP_536692.1 90962777 3978322 complement(88204..88953) 1 NC_007930.1 ABC transporter, permease protein 88953 3978322 LSL_1804b Lactobacillus salivarius UCC118 ABC transporter, permease protein YP_536692.1 88204 R 362948 CDS YP_536693.1 90962778 3978419 complement(88956..89831) 1 NC_007930.1 COG1131 [V] ABC-type multidrug transport system, ATPase component; ABC transporter, ATP-binding protein 89831 3978419 LSL_1805 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536693.1 88956 R 362948 CDS YP_536694.1 90962779 3978420 90068..90751 1 NC_007930.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 90751 rpiA 3978420 rpiA Lactobacillus salivarius UCC118 ribose-5-phosphate isomerase A YP_536694.1 90068 D 362948 CDS YP_536695.1 90962780 3978421 90768..91415 1 NC_007930.1 COG0036 [G] Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 91415 rpe 3978421 rpe Lactobacillus salivarius UCC118 ribulose-phosphate 3-epimerase YP_536695.1 90768 D 362948 CDS YP_536696.1 90962781 3978422 91485..92000 1 NC_007930.1 hypothetical protein 92000 3978422 LSL_1808 Lactobacillus salivarius UCC118 hypothetical protein YP_536696.1 91485 D 362948 CDS YP_536697.1 90962782 3978424 complement(93534..93815) 1 NC_007930.1 hypothetical protein 93815 3978424 LSL_1809 Lactobacillus salivarius UCC118 hypothetical protein YP_536697.1 93534 R 362948 CDS YP_536698.1 90962783 3978425 complement(93925..94578) 1 NC_007930.1 hypothetical protein 94578 3978425 LSL_1810 Lactobacillus salivarius UCC118 hypothetical protein YP_536698.1 93925 R 362948 CDS YP_536699.1 90962784 3978426 complement(94591..95145) 1 NC_007930.1 hypothetical protein 95145 3978426 LSL_1811 Lactobacillus salivarius UCC118 hypothetical protein YP_536699.1 94591 R 362948 CDS YP_536700.1 90962785 3978427 complement(95157..96437) 1 NC_007930.1 hypothetical protein 96437 3978427 LSL_1812 Lactobacillus salivarius UCC118 hypothetical protein YP_536700.1 95157 R 362948 CDS YP_536701.1 90962786 3978428 complement(96647..98575) 1 NC_007930.1 COG3451 [U] Type IV secretory pathway, VirB4 components; putative conjugation-related ATPase 98575 3978428 LSL_1813 Lactobacillus salivarius UCC118 putative conjugation-related ATPase YP_536701.1 96647 R 362948 CDS YP_536702.1 90962787 3978429 complement(98594..99259) 1 NC_007930.1 hypothetical protein 99259 3978429 LSL_1814 Lactobacillus salivarius UCC118 hypothetical protein YP_536702.1 98594 R 362948 CDS YP_536703.1 90962788 3978430 complement(99265..99579) 1 NC_007930.1 hypothetical protein 99579 3978430 LSL_1815 Lactobacillus salivarius UCC118 hypothetical protein YP_536703.1 99265 R 362948 CDS YP_536704.1 90962789 3978431 complement(99693..102005) 1 NC_007930.1 hypothetical protein 102005 3978431 LSL_1816 Lactobacillus salivarius UCC118 hypothetical protein YP_536704.1 99693 R 362948 CDS YP_536705.1 90962790 3978432 complement(102007..104871) 1 NC_007930.1 COG3505 [U] Type IV secretory pathway, VirD4 components; conjugation-related ATPase 104871 traG 3978432 traG Lactobacillus salivarius UCC118 conjugation-related ATPase YP_536705.1 102007 R 362948 CDS YP_536706.1 90962791 3978433 complement(104934..107351) 1 NC_007930.1 hypothetical protein 107351 3978433 LSL_1818 Lactobacillus salivarius UCC118 hypothetical protein YP_536706.1 104934 R 362948 CDS YP_536707.1 90962792 3978434 complement(107481..107819) 1 NC_007930.1 hypothetical protein 107819 3978434 LSL_1819 Lactobacillus salivarius UCC118 hypothetical protein YP_536707.1 107481 R 362948 CDS YP_536708.1 90962793 3978435 complement(107894..108181) 1 NC_007930.1 hypothetical protein 108181 3978435 LSL_1820 Lactobacillus salivarius UCC118 hypothetical protein YP_536708.1 107894 R 362948 CDS YP_536709.1 90962794 3978436 complement(108193..110013) 1 NC_007930.1 COG0542 [O] ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease 110013 clpA 3978436 clpA Lactobacillus salivarius UCC118 ATP-dependent Clp protease YP_536709.1 108193 R 362948 CDS YP_536710.1 90962795 3978456 complement(110024..110443) 1 NC_007930.1 hypothetical protein 110443 3978456 LSL_1822 Lactobacillus salivarius UCC118 hypothetical protein YP_536710.1 110024 R 362948 CDS YP_536711.1 90962796 3978457 complement(110462..111172) 1 NC_007930.1 hypothetical protein 111172 3978457 LSL_1823 Lactobacillus salivarius UCC118 hypothetical protein YP_536711.1 110462 R 362948 CDS YP_536712.1 90962797 3978458 complement(111190..113430) 1 NC_007930.1 COG0550 [L] Topoisomerase IA; topoisomerase-like protein 113430 topA 3978458 topA Lactobacillus salivarius UCC118 topoisomerase-like protein YP_536712.1 111190 R 362948 CDS YP_536713.1 90962798 3978459 complement(113442..114605) 1 NC_007930.1 hypothetical protein 114605 3978459 LSL_1825 Lactobacillus salivarius UCC118 hypothetical protein YP_536713.1 113442 R 362948 CDS YP_536714.1 90962799 3978460 complement(114819..118508) 1 NC_007930.1 COG0419 [L] ATPase involved in DNA repair; hypothetical protein 118508 3978460 LSL_1826 Lactobacillus salivarius UCC118 hypothetical protein YP_536714.1 114819 R 362948 CDS YP_536715.1 90962800 3978461 complement(118441..118842) 1 NC_007930.1 hypothetical protein 118842 3978461 LSL_1827 Lactobacillus salivarius UCC118 hypothetical protein YP_536715.1 118441 R 362948 CDS YP_536716.1 90962801 3978462 complement(118842..119090) 1 NC_007930.1 hypothetical protein 119090 3978462 LSL_1828 Lactobacillus salivarius UCC118 hypothetical protein YP_536716.1 118842 R 362948 CDS YP_536717.1 90962802 3978463 complement(119255..120433) 1 NC_007930.1 putative type II restriction enzyme 120433 3978463 LSL_1829 Lactobacillus salivarius UCC118 putative type II restriction enzyme YP_536717.1 119255 R 362948 CDS YP_536718.1 90962803 3978464 complement(120426..122510) 1 NC_007930.1 Type II restriction-modification system methylation subunit 122510 3978464 LSL_1830 Lactobacillus salivarius UCC118 Type II restriction-modification system methylation subunit YP_536718.1 120426 R 362948 CDS YP_536719.1 90962804 3978465 complement(122787..123188) 1 NC_007930.1 hypothetical protein 123188 3978465 LSL_1831 Lactobacillus salivarius UCC118 hypothetical protein YP_536719.1 122787 R 362948 CDS YP_536720.1 90962805 3978466 complement(123188..123409) 1 NC_007930.1 hypothetical protein 123409 3978466 LSL_1832 Lactobacillus salivarius UCC118 hypothetical protein YP_536720.1 123188 R 362948 CDS YP_536721.1 90962806 3978468 126189..127001 1 NC_007930.1 hypothetical protein 127001 3978468 LSL_1832c Lactobacillus salivarius UCC118 hypothetical protein YP_536721.1 126189 D 362948 CDS YP_536722.1 90962807 3978470 129066..129995 1 NC_007930.1 COG0582 [L] Integrase; DNA integration/recombination/inversion protein 129995 xerC 3978470 xerC Lactobacillus salivarius UCC118 DNA integration/recombination/inversion protein YP_536722.1 129066 D 362948 CDS YP_536723.1 90962808 3978471 complement(130037..130789) 1 NC_007930.1 COG0011 [S] Uncharacterized conserved protein; hypothetical protein 130789 3978471 LSL_1834 Lactobacillus salivarius UCC118 hypothetical protein YP_536723.1 130037 R 362948 CDS YP_536724.1 90962809 3978472 complement(130948..132078) 1 NC_007930.1 COG2856 [E] Predicted Zn peptidase; transcriptional regulator 132078 3978472 LSL_1835 Lactobacillus salivarius UCC118 transcriptional regulator YP_536724.1 130948 R 362948 CDS YP_536725.1 90962810 3978473 complement(132056..132721) 1 NC_007930.1 hypothetical protein 132721 3978473 LSL_1836 Lactobacillus salivarius UCC118 hypothetical protein YP_536725.1 132056 R 362948 CDS YP_536726.1 90962811 3978340 complement(132849..133208) 1 NC_007930.1 hypothetical protein 133208 3978340 LSL_1837 Lactobacillus salivarius UCC118 hypothetical protein YP_536726.1 132849 R 362948 CDS YP_536727.1 90962812 3978341 complement(133231..134712) 1 NC_007930.1 COG3064 [M] Membrane protein involved in colicin uptake; surface protein 134712 lspD 3978341 lspD Lactobacillus salivarius UCC118 surface protein YP_536727.1 133231 R 362948 CDS YP_536728.1 90962813 3978342 134987..135358 1 NC_007930.1 COG0583 [K] Transcriptional regulator; transcriptional regulator 135358 3978342 LSL_1839 Lactobacillus salivarius UCC118 transcriptional regulator YP_536728.1 134987 D 362948 CDS YP_536729.1 90962814 3978343 complement(136215..136355) 1 NC_007930.1 hypothetical protein 136355 3978343 LSL_1840 Lactobacillus salivarius UCC118 hypothetical protein YP_536729.1 136215 R 362948 CDS YP_536730.1 90962815 3978344 complement(136348..136509) 1 NC_007930.1 hypothetical protein 136509 3978344 LSL_1841 Lactobacillus salivarius UCC118 hypothetical protein YP_536730.1 136348 R 362948 CDS YP_536731.1 90962816 3978345 complement(136611..136985) 1 NC_007930.1 hypothetical protein 136985 3978345 LSL_1842 Lactobacillus salivarius UCC118 hypothetical protein YP_536731.1 136611 R 362948 CDS YP_536732.1 90962817 3978346 complement(136928..137593) 1 NC_007930.1 hypothetical protein 137593 3978346 LSL_1843 Lactobacillus salivarius UCC118 hypothetical protein YP_536732.1 136928 R 362948 CDS YP_536733.1 90962818 3978347 complement(137590..137973) 1 NC_007930.1 hypothetical protein 137973 3978347 LSL_1844 Lactobacillus salivarius UCC118 hypothetical protein YP_536733.1 137590 R 362948 CDS YP_536734.1 90962819 3978349 complement(140263..140685) 1 NC_007930.1 hypothetical protein 140685 3978349 LSL_1845 Lactobacillus salivarius UCC118 hypothetical protein YP_536734.1 140263 R 362948 CDS YP_536735.1 90962820 3978350 complement(140682..141164) 1 NC_007930.1 hypothetical protein 141164 3978350 LSL_1846 Lactobacillus salivarius UCC118 hypothetical protein YP_536735.1 140682 R 362948 CDS YP_536736.1 90962821 3978351 complement(141177..141533) 1 NC_007930.1 hypothetical protein 141533 3978351 LSL_1847 Lactobacillus salivarius UCC118 hypothetical protein YP_536736.1 141177 R 362948 CDS YP_536737.1 90962822 3978353 complement(142260..142574) 1 NC_007930.1 hypothetical protein 142574 3978353 LSL_1848 Lactobacillus salivarius UCC118 hypothetical protein YP_536737.1 142260 R 362948 CDS YP_536738.1 90962823 3978354 complement(143083..143379) 1 NC_007930.1 hypothetical protein 143379 3978354 LSL_1849 Lactobacillus salivarius UCC118 hypothetical protein YP_536738.1 143083 R 362948 CDS YP_536739.1 90962824 3978355 complement(143412..143924) 1 NC_007930.1 hypothetical protein 143924 3978355 LSL_1850 Lactobacillus salivarius UCC118 hypothetical protein YP_536739.1 143412 R 362948 CDS YP_536740.1 90962825 3978356 complement(144031..144711) 1 NC_007930.1 hypothetical protein 144711 3978356 LSL_1851 Lactobacillus salivarius UCC118 hypothetical protein YP_536740.1 144031 R 362948 CDS YP_536741.1 90962826 3978357 complement(144823..145038) 1 NC_007930.1 hypothetical protein 145038 3978357 LSL_1852 Lactobacillus salivarius UCC118 hypothetical protein YP_536741.1 144823 R 362948 CDS YP_536742.1 90962827 3978268 complement(145031..145231) 1 NC_007930.1 hypothetical protein 145231 3978268 LSL_1853 Lactobacillus salivarius UCC118 hypothetical protein YP_536742.1 145031 R 362948 CDS YP_536743.1 90962828 3978269 complement(145271..146272) 1 NC_007930.1 hypothetical protein 146272 3978269 LSL_1854 Lactobacillus salivarius UCC118 hypothetical protein YP_536743.1 145271 R 362948 CDS YP_536744.1 90962829 3978270 complement(146269..146763) 1 NC_007930.1 putative thioredoxin-like protein 146763 3978270 LSL_1855 Lactobacillus salivarius UCC118 putative thioredoxin-like protein YP_536744.1 146269 R 362948 CDS YP_536745.1 90962830 3978271 complement(146776..146991) 1 NC_007930.1 hypothetical protein 146991 3978271 LSL_1856 Lactobacillus salivarius UCC118 hypothetical protein YP_536745.1 146776 R 362948 CDS YP_536746.1 90962831 3978272 complement(146942..147349) 1 NC_007930.1 hypothetical protein 147349 3978272 LSL_1857 Lactobacillus salivarius UCC118 hypothetical protein YP_536746.1 146942 R 362948 CDS YP_536747.1 90962832 3978275 complement(149960..150106) 1 NC_007930.1 hypothetical protein 150106 3978275 LSL_1858 Lactobacillus salivarius UCC118 hypothetical protein YP_536747.1 149960 R 362948 CDS YP_536748.1 90962833 3978276 150202..150354 1 NC_007930.1 hypothetical protein 150354 3978276 LSL_1859 Lactobacillus salivarius UCC118 hypothetical protein YP_536748.1 150202 D 362948 CDS YP_536749.1 90962834 3978277 complement(150296..150454) 1 NC_007930.1 hypothetical protein 150454 3978277 LSL_1860 Lactobacillus salivarius UCC118 hypothetical protein YP_536749.1 150296 R 362948 CDS YP_536750.1 90962835 3978278 complement(150785..150985) 1 NC_007930.1 putative phage-related DNA binding protein 150985 3978278 LSL_1861 Lactobacillus salivarius UCC118 putative phage-related DNA binding protein YP_536750.1 150785 R 362948 CDS YP_536751.1 90962836 3978279 151191..151613 1 NC_007930.1 hypothetical protein 151613 3978279 LSL_1862 Lactobacillus salivarius UCC118 hypothetical protein YP_536751.1 151191 D 362948 CDS YP_536752.1 90962837 3978280 complement(152335..153105) 1 NC_007930.1 hypothetical protein 153105 3978280 LSL_2159 Lactobacillus salivarius UCC118 hypothetical protein YP_536752.1 152335 R 362948 CDS YP_536753.1 90962838 3978281 complement(153299..153529) 1 NC_007930.1 hypothetical protein 153529 3978281 LSL_1863 Lactobacillus salivarius UCC118 hypothetical protein YP_536753.1 153299 R 362948 CDS YP_536754.1 90962839 3978282 complement(153777..154022) 1 NC_007930.1 hypothetical protein 154022 3978282 LSL_1864 Lactobacillus salivarius UCC118 hypothetical protein YP_536754.1 153777 R 362948 CDS YP_536755.1 90962840 3978283 complement(154275..154523) 1 NC_007930.1 hypothetical protein 154523 3978283 LSL_1865 Lactobacillus salivarius UCC118 hypothetical protein YP_536755.1 154275 R 362948 CDS YP_536756.1 90962841 3978284 complement(154628..157306) 1 NC_007930.1 hypothetical protein 157306 3978284 LSL_1866 Lactobacillus salivarius UCC118 hypothetical protein YP_536756.1 154628 R 362948 CDS YP_536757.1 90962842 3978285 157427..157726 1 NC_007930.1 hypothetical protein 157726 3978285 LSL_1867 Lactobacillus salivarius UCC118 hypothetical protein YP_536757.1 157427 D 362948 CDS YP_536758.1 90962843 3978437 157852..159081 1 NC_007930.1 hypothetical protein 159081 3978437 LSL_1868 Lactobacillus salivarius UCC118 hypothetical protein YP_536758.1 157852 D 362948 CDS YP_536759.1 90962844 3978438 159101..159490 1 NC_007930.1 hypothetical protein 159490 3978438 LSL_1869 Lactobacillus salivarius UCC118 hypothetical protein YP_536759.1 159101 D 362948 CDS YP_536760.1 90962845 3978439 160095..160397 1 NC_007930.1 hypothetical protein 160397 3978439 LSL_1870 Lactobacillus salivarius UCC118 hypothetical protein YP_536760.1 160095 D 362948 CDS YP_536761.1 90962846 3978440 160655..161533 1 NC_007930.1 COG1752 [R] Predicted esterase of the alpha-beta hydrolase superfamily; hydrolase 161533 3978440 LSL_1871 Lactobacillus salivarius UCC118 hydrolase YP_536761.1 160655 D 362948 CDS YP_536762.1 90962847 3978441 complement(161619..162455) 1 NC_007930.1 COG1180 [O] Pyruvate-formate lyase-activating enzyme; pyruvate formate-lyase activating enzyme 162455 pflA 3978441 pflA Lactobacillus salivarius UCC118 pyruvate formate-lyase activating enzyme YP_536762.1 161619 R 362948 CDS YP_536763.1 90962848 3978442 complement(162482..164749) 1 NC_007930.1 COG1882 [C] Pyruvate-formate lyase; formate acetyltransferase 164749 pflD 3978442 pflD Lactobacillus salivarius UCC118 formate acetyltransferase YP_536763.1 162482 R 362948 CDS YP_536764.1 90962849 3978443 complement(165122..166411) 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; ISL3 family transposase 166411 3978443 LSL_1874 Lactobacillus salivarius UCC118 ISL3 family transposase YP_536764.1 165122 R 362948 CDS YP_536765.1 90962850 3978444 complement(166575..167159) 1 NC_007930.1 COG0700 [S] Uncharacterized membrane protein; hypothetical protein 167159 3978444 LSL_1875 Lactobacillus salivarius UCC118 hypothetical protein YP_536765.1 166575 R 362948 CDS YP_536766.1 90962851 3978446 complement(169115..170518) 1 NC_007930.1 COG0719 [O] ABC-type transport system involved in Fe-S cluster assembly, permease component; ABC transporter-associated protein 170518 sufB 3978446 sufB Lactobacillus salivarius UCC118 ABC transporter-associated protein YP_536766.1 169115 R 362948 CDS YP_536767.1 90962852 3978447 complement(170511..170960) 1 NC_007930.1 COG0822 [C] NifU homolog involved in Fe-S cluster formation; IscU protein 170960 iscU 3978447 iscU Lactobacillus salivarius UCC118 IscU protein YP_536767.1 170511 R 362948 CDS YP_536768.1 90962853 3978448 complement(170957..172186) 1 NC_007930.1 COG0520 [E] Selenocysteine lyase; putative aminotransferase 172186 3978448 LSL_1879 Lactobacillus salivarius UCC118 putative aminotransferase YP_536768.1 170957 R 362948 CDS YP_536769.1 90962854 3978449 complement(172170..173420) 1 NC_007930.1 COG0719 [O] ABC-type transport system involved in Fe-S cluster assembly, permease component; SufD protein 173420 sufD 3978449 sufD Lactobacillus salivarius UCC118 SufD protein YP_536769.1 172170 R 362948 CDS YP_536770.1 90962855 3978450 complement(173433..174212) 1 NC_007930.1 COG0396 [O] ABC-type transport system involved in Fe-S cluster assembly, ATPase component; ABC transporter, ATP-binding protein 174212 3978450 LSL_1881 Lactobacillus salivarius UCC118 ABC transporter, ATP-binding protein YP_536770.1 173433 R 362948 CDS YP_536771.1 90962856 3978451 complement(174475..176109) 1 NC_007930.1 COG4166 [E] ABC-type oligopeptide transport system, periplasmic component; oligopeptide-binding protein oppA 176109 3978451 LSL_1882 Lactobacillus salivarius UCC118 oligopeptide-binding protein oppA YP_536771.1 174475 R 362948 CDS YP_536772.1 90962857 3978452 complement(176562..177719) 1 NC_007930.1 hypothetical protein 177719 3978452 LSL_1883 Lactobacillus salivarius UCC118 hypothetical protein YP_536772.1 176562 R 362948 CDS YP_536773.1 90962858 3978453 complement(177913..178185) 1 NC_007930.1 hypothetical protein 178185 3978453 LSL_1884 Lactobacillus salivarius UCC118 hypothetical protein YP_536773.1 177913 R 362948 CDS YP_536774.1 90962859 3978454 complement(178566..178766) 1 NC_007930.1 hypothetical protein 178766 3978454 LSL_1885 Lactobacillus salivarius UCC118 hypothetical protein YP_536774.1 178566 R 362948 CDS YP_536775.1 90962860 3978455 complement(179025..180074) 1 NC_007930.1 COG3641 [R] Predicted membrane protein, putative toxin regulator; hypothetical protein 180074 3978455 LSL_1886 Lactobacillus salivarius UCC118 hypothetical protein YP_536775.1 179025 R 362948 CDS YP_536776.1 90962861 3978358 180281..181276 1 NC_007930.1 COG1052 [CHR] Lactate dehydrogenase and related dehydrogenases; D-lactate dehydrogenase 181276 ldhD 3978358 ldhD Lactobacillus salivarius UCC118 D-lactate dehydrogenase YP_536776.1 180281 D 362948 CDS YP_536777.1 90962862 3978359 complement(181337..182017) 1 NC_007930.1 similar to transaldolase from Escherichia coli; many organisms have multiple copies; fructose-6-phosphate aldolase 182017 mipB 3978359 mipB Lactobacillus salivarius UCC118 fructose-6-phosphate aldolase YP_536777.1 181337 R 362948 CDS YP_536778.1 90962863 3978360 complement(182084..182464) 1 NC_007930.1 COG3731 [G] Phosphotransferase system sorbitol-specific component IIA; PTS system, glucitol/sorbitol-specific IIA component 182464 3978360 LSL_1889 Lactobacillus salivarius UCC118 PTS system, glucitol/sorbitol-specific IIA component YP_536778.1 182084 R 362948 CDS YP_536779.1 90962864 3978361 complement(182501..183526) 1 NC_007930.1 COG3732 [G] Phosphotransferase system sorbitol-specific component IIBC; PTS system, glucitol/sorbitol-specific IIBC component 183526 3978361 LSL_1890 Lactobacillus salivarius UCC118 PTS system, glucitol/sorbitol-specific IIBC component YP_536779.1 182501 R 362948 CDS YP_536780.1 90962865 3978362 complement(183543..184085) 1 NC_007930.1 COG3730 [G] Phosphotransferase system sorbitol-specific component IIC; PTS system, glucitol/sorbitol-specific IIC2 component 184085 3978362 LSL_1891 Lactobacillus salivarius UCC118 PTS system, glucitol/sorbitol-specific IIC2 component YP_536780.1 183543 R 362948 CDS YP_536781.1 90962866 3978363 complement(184097..184594) 1 NC_007930.1 sorbitol operon activator 184594 3978363 LSL_1892 Lactobacillus salivarius UCC118 sorbitol operon activator YP_536781.1 184097 R 362948 CDS YP_536782.1 90962867 3978364 complement(184595..186454) 1 NC_007930.1 COG3711 [K] Transcriptional antiterminator; sorbitol operon transcription regulator 186454 3978364 LSL_1893 Lactobacillus salivarius UCC118 sorbitol operon transcription regulator YP_536782.1 184595 R 362948 CDS YP_536783.1 90962868 3978365 complement(186470..187273) 1 NC_007930.1 Converts D-sorbitol-dphosphate to D-fructose-6-phosphate; sorbitol-6-phosphate 2-dehydrogenase 187273 3978365 LSL_1894 Lactobacillus salivarius UCC118 sorbitol-6-phosphate 2-dehydrogenase YP_536783.1 186470 R 362948 CDS YP_536784.1 90962869 3978367 complement(188605..188781) 1 NC_007930.1 hypothetical protein 188781 3978367 LSL_1895 Lactobacillus salivarius UCC118 hypothetical protein YP_536784.1 188605 R 362948 CDS YP_536785.1 90962870 3978368 complement(188834..189226) 1 NC_007930.1 hypothetical protein 189226 3978368 LSL_1896 Lactobacillus salivarius UCC118 hypothetical protein YP_536785.1 188834 R 362948 CDS YP_536786.1 90962871 3978369 complement(189328..189531) 1 NC_007930.1 hypothetical protein 189531 3978369 LSL_1897 Lactobacillus salivarius UCC118 hypothetical protein YP_536786.1 189328 R 362948 CDS YP_536787.1 90962872 3978370 complement(189521..190177) 1 NC_007930.1 hypothetical protein 190177 3978370 LSL_1898 Lactobacillus salivarius UCC118 hypothetical protein YP_536787.1 189521 R 362948 CDS YP_536788.1 90962873 3978371 complement(190296..190436) 1 NC_007930.1 hypothetical protein 190436 3978371 LSL_1899 Lactobacillus salivarius UCC118 hypothetical protein YP_536788.1 190296 R 362948 CDS YP_536789.1 90962874 3978372 complement(190471..191367) 1 NC_007930.1 COG2070 [R] Dioxygenases related to 2-nitropropane dioxygenase; dioxygenase/reductase 191367 3978372 LSL_1900 Lactobacillus salivarius UCC118 dioxygenase/reductase YP_536789.1 190471 R 362948 CDS YP_536790.1 90962875 3978373 complement(191470..194127) 1 NC_007930.1 COG1012 [C] NAD-dependent aldehyde dehydrogenases; acetylating; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 194127 3978373 LSL_1901 Lactobacillus salivarius UCC118 bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_536790.1 191470 R 362948 CDS YP_536791.1 90962876 3978375 complement(195235..197205) 1 NC_007930.1 COG0718 [S] Uncharacterized protein conserved in bacteria; fructose-1,6-bisphosphatase 197205 3978375 LSL_1903 Lactobacillus salivarius UCC118 fructose-1,6-bisphosphatase YP_536791.1 195235 R 362948 CDS YP_536792.1 90962877 3978395 197465..198286 1 NC_007930.1 hypothetical protein 198286 3978395 LSL_1905 Lactobacillus salivarius UCC118 hypothetical protein YP_536792.1 197465 D 362948 CDS YP_536793.1 90962878 3978396 198322..198588 1 NC_007930.1 hypothetical protein 198588 3978396 LSL_1906 Lactobacillus salivarius UCC118 hypothetical protein YP_536793.1 198322 D 362948 CDS YP_536794.1 90962879 3978397 complement(198695..199219) 1 NC_007930.1 hypothetical protein 199219 3978397 LSL_1907 Lactobacillus salivarius UCC118 hypothetical protein YP_536794.1 198695 R 362948 CDS YP_536795.1 90962880 3978398 complement(199292..199522) 1 NC_007930.1 hypothetical protein 199522 3978398 LSL_1908 Lactobacillus salivarius UCC118 hypothetical protein YP_536795.1 199292 R 362948 CDS YP_536796.1 90962881 3978399 complement(199638..200792) 1 NC_007930.1 AbpD bacteriocin export accessory protein 200792 abpD 3978399 abpD Lactobacillus salivarius UCC118 AbpD bacteriocin export accessory protein YP_536796.1 199638 R 362948 CDS YP_536797.1 90962882 3978400 complement(200809..202968) 1 NC_007930.1 COG2274 [V] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; AbpT bacteriocin export accessory protein 202968 abpT 3978400 abpT Lactobacillus salivarius UCC118 AbpT bacteriocin export accessory protein YP_536797.1 200809 R 362948 CDS YP_536798.1 90962883 3978401 complement(203118..203387) 1 NC_007930.1 hypothetical protein 203387 3978401 LSL_1911 Lactobacillus salivarius UCC118 hypothetical protein YP_536798.1 203118 R 362948 CDS YP_536799.1 90962884 3978402 complement(203395..204189) 1 NC_007930.1 COG3279 [KT] Response regulator of the LytR/AlgR family; AbpR response regulator 204189 abpR 3978402 abpR Lactobacillus salivarius UCC118 AbpR response regulator YP_536799.1 203395 R 362948 CDS YP_536800.1 90962885 3978403 complement(204203..205492) 1 NC_007930.1 COG2972 [T] Predicted signal transduction protein with a C-terminal ATPase domain; AbpK sensory transduction histidine kinase 205492 abpK 3978403 abpK Lactobacillus salivarius UCC118 AbpK sensory transduction histidine kinase YP_536800.1 204203 R 362948 CDS YP_536801.1 90962886 3978404 complement(205492..205608) 1 NC_007930.1 AbpIP induction peptide 205608 abpIP 3978404 abpIP Lactobacillus salivarius UCC118 AbpIP induction peptide YP_536801.1 205492 R 362948 CDS YP_536802.1 90962887 3978405 complement(205728..205895) 1 NC_007930.1 AbpIM bacteriocin immunity protein 205895 abpIM 3978405 abpIM Lactobacillus salivarius UCC118 AbpIM bacteriocin immunity protein YP_536802.1 205728 R 362948 CDS YP_536803.1 90962888 3978406 complement(206038..206244) 1 NC_007930.1 Abp118 bacteriocin beta peptide 206244 abp118b 3978406 abp118b Lactobacillus salivarius UCC118 Abp118 bacteriocin beta peptide YP_536803.1 206038 R 362948 CDS YP_536804.1 90962889 3978407 complement(206262..206456) 1 NC_007930.1 Abp118 bacteriocin alpha peptide 206456 abp118a 3978407 abp118a Lactobacillus salivarius UCC118 Abp118 bacteriocin alpha peptide YP_536804.1 206262 R 362948 CDS YP_536805.1 90962890 3978408 complement(206462..206719) 1 NC_007930.1 bacteriocin-like prepeptide 206719 3978408 LSL_1918 Lactobacillus salivarius UCC118 bacteriocin-like prepeptide YP_536805.1 206462 R 362948 CDS YP_536806.1 90962891 3978409 206824..206985 1 NC_007930.1 hypothetical protein 206985 3978409 LSL_1919 Lactobacillus salivarius UCC118 hypothetical protein YP_536806.1 206824 D 362948 CDS YP_536807.1 90962892 3978410 complement(207128..207280) 1 NC_007930.1 bacteriocin-like prepeptide 207280 3978410 LSL_1920 Lactobacillus salivarius UCC118 bacteriocin-like prepeptide YP_536807.1 207128 R 362948 CDS YP_536808.1 90962893 3978411 complement(207404..207577) 1 NC_007930.1 nonfunctional salvaricin B precursor 207577 3978411 LSL_1921 Lactobacillus salivarius UCC118 nonfunctional salvaricin B precursor YP_536808.1 207404 R 362948 CDS YP_536809.1 90962894 3978412 207809..208072 1 NC_007930.1 hypothetical protein 208072 3978412 LSL_1922 Lactobacillus salivarius UCC118 hypothetical protein YP_536809.1 207809 D 362948 CDS YP_536810.1 90962895 3978413 complement(208111..208236) 1 NC_007930.1 hypothetical protein 208236 3978413 LSL_1923 Lactobacillus salivarius UCC118 hypothetical protein YP_536810.1 208111 R 362948 CDS YP_536811.1 90962896 3978376 208361..209329 1 NC_007930.1 hypothetical protein 209329 3978376 LSL_1924 Lactobacillus salivarius UCC118 hypothetical protein YP_536811.1 208361 D 362948 CDS YP_536812.1 90962897 3978377 complement(209512..209865) 1 NC_007930.1 hypothetical protein 209865 3978377 LSL_1925 Lactobacillus salivarius UCC118 hypothetical protein YP_536812.1 209512 R 362948 CDS YP_536813.1 90962898 3978378 complement(209874..210143) 1 NC_007930.1 hypothetical protein 210143 3978378 LSL_1926 Lactobacillus salivarius UCC118 hypothetical protein YP_536813.1 209874 R 362948 CDS YP_536814.1 90962899 3978379 complement(210302..211480) 1 NC_007930.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 211480 avtA 3978379 avtA Lactobacillus salivarius UCC118 transaminase YP_536814.1 210302 R 362948 CDS YP_536815.1 90962900 3978380 complement(211498..212283) 1 NC_007930.1 COG0388 [R] Predicted amidohydrolase; carbon-nitrogen hydrolase family protein 212283 3978380 LSL_1928 Lactobacillus salivarius UCC118 carbon-nitrogen hydrolase family protein YP_536815.1 211498 R 362948 CDS YP_536816.1 90962901 3978381 complement(212426..212926) 1 NC_007930.1 COG3471 [S] Predicted periplasmic/secreted protein; hypothetical protein 212926 3978381 LSL_1929 Lactobacillus salivarius UCC118 hypothetical protein YP_536816.1 212426 R 362948 CDS YP_536817.1 90962902 3978382 complement(212944..213258) 1 NC_007930.1 COG2151 [R] Predicted metal-sulfur cluster biosynthetic enzyme; hypothetical protein 213258 3978382 LSL_1930 Lactobacillus salivarius UCC118 hypothetical protein YP_536817.1 212944 R 362948 CDS YP_536818.1 90962903 3978383 complement(213275..214156) 1 NC_007930.1 COG1760 [E] L-serine deaminase; L-serine dehydratase alpha subunit 214156 sdaA 3978383 sdaA Lactobacillus salivarius UCC118 L-serine dehydratase alpha subunit YP_536818.1 213275 R 362948 CDS YP_536819.1 90962904 3978384 complement(214169..214831) 1 NC_007930.1 COG1760 [E] L-serine deaminase; L-serine dehydratase beta subunit 214831 sdaB 3978384 sdaB Lactobacillus salivarius UCC118 L-serine dehydratase beta subunit YP_536819.1 214169 R 362948 CDS YP_536820.1 90962905 3978386 complement(215944..217380) 1 NC_007930.1 COG2211 [G] Na+/melibiose symporter and related transporters; hypothetical protein 217380 3978386 LSL_1933 Lactobacillus salivarius UCC118 hypothetical protein YP_536820.1 215944 R 362948 CDS YP_536821.1 90962906 3978387 complement(217472..218587) 1 NC_007930.1 COG0673 [R] Predicted dehydrogenases and related proteins; putative oxidoreductase 218587 3978387 LSL_1934 Lactobacillus salivarius UCC118 putative oxidoreductase YP_536821.1 217472 R 362948 CDS YP_536822.1 90962907 3978388 218978..219427 1 NC_007930.1 COG2731 [G] Beta-galactosidase, beta subunit; hypothetical protein 219427 3978388 LSL_1935 Lactobacillus salivarius UCC118 hypothetical protein YP_536822.1 218978 D 362948 CDS YP_536823.1 90962908 3978389 complement(219500..219937) 1 NC_007930.1 COG0105 [F] Nucleoside diphosphate kinase; nucleoside diphosphate kinase 219937 ndk 3978389 ndk Lactobacillus salivarius UCC118 nucleoside diphosphate kinase YP_536823.1 219500 R 362948 CDS YP_536824.1 90962909 3978390 complement(220022..220885) 1 NC_007930.1 COG1940 [KG] Transcriptional regulator/sugar kinase; glucokinase 220885 nagC 3978390 nagC Lactobacillus salivarius UCC118 glucokinase YP_536824.1 220022 R 362948 CDS YP_536825.1 90962910 3978391 221116..221988 1 NC_007930.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 221988 nanA 3978391 nanA Lactobacillus salivarius UCC118 N-acetylneuraminate lyase YP_536825.1 221116 D 362948 CDS YP_536826.1 90962911 3978392 222008..222697 1 NC_007930.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 222697 nanE 3978392 nanE Lactobacillus salivarius UCC118 N-acetylmannosamine-6-phosphate 2-epimerase YP_536826.1 222008 D 362948 CDS YP_536827.1 90962912 3978393 222743..223567 1 NC_007930.1 COG1522 [K] Transcriptional regulators; RpiR family transcriptional regulator 223567 3978393 LSL_1940 Lactobacillus salivarius UCC118 RpiR family transcriptional regulator YP_536827.1 222743 D 362948 CDS YP_536828.1 90962913 3978394 223624..224241 1 NC_007930.1 hypothetical protein 224241 3978394 LSL_1941 Lactobacillus salivarius UCC118 hypothetical protein YP_536828.1 223624 D 362948 CDS YP_536829.1 90962914 3978323 224414..225901 1 NC_007930.1 COG0531 [E] Amino acid transporters; amino acid permease 225901 potE 3978323 potE Lactobacillus salivarius UCC118 amino acid permease YP_536829.1 224414 D 362948 CDS YP_536830.1 90962915 3978324 complement(225956..226072) 1 NC_007930.1 hypothetical protein 226072 3978324 LSL_1943 Lactobacillus salivarius UCC118 hypothetical protein YP_536830.1 225956 R 362948 CDS YP_536831.1 90962916 3978325 complement(226083..226352) 1 NC_007930.1 COG0199 [J] Ribosomal protein S14; SSU ribosomal protein S14P 226352 rpsN 3978325 rpsN Lactobacillus salivarius UCC118 SSU ribosomal protein S14P YP_536831.1 226083 R 362948 CDS YP_536832.1 90962917 3978326 226555..228474 1 NC_007930.1 COG0480 [J] Translation elongation factors (GTPases); tetracycline resistance protein 228474 fusA 3978326 fusA Lactobacillus salivarius UCC118 tetracycline resistance protein YP_536832.1 226555 D 362948 CDS YP_536833.1 90962918 3978327 complement(228631..230622) 1 NC_007930.1 COG0021 [G] Transketolase; transketolase 230622 tktA 3978327 tktA Lactobacillus salivarius UCC118 transketolase YP_536833.1 228631 R 362948 CDS YP_536834.1 90962919 3978328 complement(230640..231293) 1 NC_007930.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 231293 mipB 3978328 mipB Lactobacillus salivarius UCC118 putative translaldolase YP_536834.1 230640 R 362948 CDS YP_536835.1 90962920 3978329 complement(231730..232377) 1 NC_007930.1 COG0036 [G] Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 232377 rpe 3978329 rpe Lactobacillus salivarius UCC118 ribulose-phosphate 3-epimerase YP_536835.1 231730 R 362948 CDS YP_536836.1 90962921 3978330 complement(232393..233223) 1 NC_007930.1 COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; PTS system, mannose-specific IID component 233223 3978330 LSL_1949 Lactobacillus salivarius UCC118 PTS system, mannose-specific IID component YP_536836.1 232393 R 362948 CDS YP_536837.1 90962922 3978331 complement(233223..233987) 1 NC_007930.1 COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS system, mannose-specific IIC component 233987 3978331 LSL_1950 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIC component YP_536837.1 233223 R 362948 CDS YP_536838.1 90962923 3978332 complement(234005..234481) 1 NC_007930.1 COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB; PTS system, mannose-specific IIAB component 234481 3978332 LSL_1951 Lactobacillus salivarius UCC118 PTS system, mannose-specific IIAB component YP_536838.1 234005 R 362948 CDS YP_536839.1 90962924 3978333 complement(234495..234941) 1 NC_007930.1 COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA; PTS system, mannose-specific IIAB component 234941 manX 3978333 manX Lactobacillus salivarius UCC118 PTS system, mannose-specific IIAB component YP_536839.1 234495 R 362948 CDS YP_536840.1 90962925 3978334 complement(234955..236028) 1 NC_007930.1 COG1063 [ER] Threonine dehydrogenase and related Zn-dependent dehydrogenases; ribitol-5-phosphate 2-dehydrogenase 236028 tdh 3978334 tdh Lactobacillus salivarius UCC118 ribitol-5-phosphate 2-dehydrogenase YP_536840.1 234955 R 362948 CDS YP_536841.1 90962926 3978335 236246..237001 1 NC_007930.1 COG1349 [KG] Transcriptional regulators of sugar metabolism; DeoR family transcriptional regulator 237001 3978335 LSL_1955 Lactobacillus salivarius UCC118 DeoR family transcriptional regulator YP_536841.1 236246 D 362948 CDS YP_536842.1 90962927 3978336 237097..239463 1 NC_007930.1 COG3957 [G] Phosphoketolase; putative phosphoketolase 239463 3978336 LSL_1956 Lactobacillus salivarius UCC118 putative phosphoketolase YP_536842.1 237097 D 362948 CDS YP_536843.1 90962928 3978337 complement(239744..240640) 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase 240640 3978337 LSL_1957 Lactobacillus salivarius UCC118 IS1223 family transposase YP_536843.1 239744 R 362948 CDS YP_536844.1 90962929 3978338 complement(240643..241161) 1 NC_007930.1 COG0675 [L] Transposase and inactivated derivatives; IS1223 family transposase 241161 3978338 LSL_1958 Lactobacillus salivarius UCC118 IS1223 family transposase YP_536844.1 240643 R 362948 CDS YP_536845.1 90962930 3978339 complement(241215..241619) 1 NC_007930.1 hypothetical protein 241619 3978339 LSL_1959 Lactobacillus salivarius UCC118 hypothetical protein YP_536845.1 241215 R 362948 CDS